Query 004125
Match_columns 772
No_of_seqs 323 out of 983
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 15:05:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dnz_A Probable RNA-binding pr 96.4 0.029 9.8E-07 47.8 11.3 39 320-358 47-87 (95)
2 4fxv_A ELAV-like protein 1; RN 96.4 0.014 4.9E-07 50.7 9.1 38 199-241 17-54 (99)
3 2lkz_A RNA-binding protein 5; 96.3 0.0078 2.7E-07 52.1 7.0 34 320-353 53-92 (95)
4 2jrs_A RNA-binding protein 39; 96.1 0.027 9.3E-07 49.7 9.6 84 198-358 23-108 (108)
5 3s8s_A Histone-lysine N-methyl 96.0 0.025 8.5E-07 50.2 9.0 80 199-355 4-85 (110)
6 1x5s_A Cold-inducible RNA-bind 95.9 0.037 1.3E-06 47.9 9.4 35 320-354 54-90 (102)
7 3bs9_A Nucleolysin TIA-1 isofo 95.9 0.031 1E-06 46.7 8.5 37 199-240 4-40 (87)
8 3mdf_A Peptidyl-prolyl CIS-tra 95.8 0.037 1.3E-06 46.0 8.7 35 199-238 5-39 (85)
9 1fxl_A Paraneoplastic encephal 95.8 0.06 2.1E-06 50.4 11.2 58 320-377 44-109 (167)
10 2e5h_A Zinc finger CCHC-type a 95.8 0.043 1.5E-06 46.6 9.2 38 197-239 12-49 (94)
11 1x5u_A Splicing factor 3B subu 95.8 0.063 2.2E-06 46.6 10.5 36 320-355 57-94 (105)
12 2dgs_A DAZ-associated protein 95.8 0.084 2.9E-06 45.3 11.1 37 198-239 7-43 (99)
13 1whw_A Hypothetical protein ri 95.7 0.055 1.9E-06 46.4 9.8 37 320-356 50-88 (99)
14 3p5t_L Cleavage and polyadenyl 95.7 0.02 6.8E-07 48.6 6.7 37 320-356 45-83 (90)
15 2lxi_A RNA-binding protein 10; 95.6 0.015 5.1E-07 49.7 5.6 35 319-353 43-80 (91)
16 2cq3_A RNA-binding protein 9; 95.6 0.11 3.7E-06 45.0 11.3 36 320-355 55-92 (103)
17 2dnh_A Bruno-like 5, RNA bindi 95.6 0.09 3.1E-06 45.6 10.7 38 198-240 12-49 (105)
18 2cpz_A CUG triplet repeat RNA- 95.6 0.048 1.6E-06 48.4 9.0 38 198-240 22-59 (115)
19 2dgo_A Cytotoxic granule-assoc 95.5 0.081 2.8E-06 46.8 10.4 38 198-240 12-49 (115)
20 2x1f_A MRNA 3'-END-processing 95.5 0.061 2.1E-06 46.0 9.2 36 320-355 44-81 (96)
21 4a8x_A RNA-binding protein wit 95.5 0.033 1.1E-06 46.6 7.2 37 320-356 47-85 (88)
22 1x5t_A Splicing factor 3B subu 95.5 0.055 1.9E-06 46.1 8.7 35 320-354 48-84 (96)
23 2dgp_A Bruno-like 4, RNA bindi 95.5 0.076 2.6E-06 46.2 9.8 36 320-355 55-95 (106)
24 2cq0_A Eukaryotic translation 95.4 0.076 2.6E-06 46.0 9.7 38 198-240 12-49 (103)
25 3md1_A Nuclear and cytoplasmic 95.4 0.073 2.5E-06 43.9 9.2 35 320-354 43-79 (83)
26 2fy1_A RNA-binding motif prote 95.4 0.11 3.7E-06 46.3 10.7 35 320-354 48-84 (116)
27 2cqd_A RNA-binding region cont 95.4 0.08 2.7E-06 47.0 9.8 37 198-239 14-50 (116)
28 2dgv_A HnRNP M, heterogeneous 95.4 0.091 3.1E-06 44.3 9.7 37 320-356 48-86 (92)
29 1p27_B RNA-binding protein 8A; 95.3 0.086 3E-06 45.8 9.8 38 198-240 20-57 (106)
30 2do4_A Squamous cell carcinoma 95.3 0.088 3E-06 45.3 9.7 36 320-355 58-95 (100)
31 2cqi_A Nucleolysin TIAR; RNA r 95.3 0.09 3.1E-06 45.5 9.9 35 321-355 56-92 (103)
32 2cqc_A Arginine/serine-rich sp 95.3 0.058 2E-06 45.8 8.4 38 198-240 12-49 (95)
33 4f25_A Polyadenylate-binding p 95.3 0.077 2.6E-06 47.2 9.5 36 200-240 4-39 (115)
34 2dnm_A SRP46 splicing factor; 95.3 0.078 2.7E-06 45.9 9.3 35 320-354 55-91 (103)
35 2cph_A RNA binding motif prote 95.3 0.12 4.1E-06 44.9 10.5 36 320-355 58-96 (107)
36 1b7f_A Protein (SXL-lethal pro 95.3 0.083 2.8E-06 49.6 10.1 58 320-377 45-110 (168)
37 2div_A TRNA selenocysteine ass 95.2 0.092 3.2E-06 45.0 9.5 38 198-240 6-44 (99)
38 2cqg_A TDP-43, TAR DNA-binding 95.2 0.077 2.6E-06 46.0 8.9 37 199-240 13-49 (103)
39 2khc_A Testis-specific RNP-typ 95.1 0.079 2.7E-06 47.1 9.0 37 198-239 37-73 (118)
40 1wi8_A EIF-4B, eukaryotic tran 95.1 0.12 4.1E-06 44.8 10.0 36 198-239 12-47 (104)
41 1oo0_B CG8781-PA, drosophila Y 95.1 0.094 3.2E-06 46.0 9.3 34 320-353 68-103 (110)
42 1h2v_Z 20 kDa nuclear CAP bind 95.1 0.097 3.3E-06 49.1 10.0 80 199-355 37-118 (156)
43 2dhg_A TRNA selenocysteine ass 95.0 0.12 4E-06 44.8 9.6 38 198-240 6-44 (104)
44 3ucg_A Polyadenylate-binding p 95.0 0.091 3.1E-06 43.9 8.6 36 200-240 5-40 (89)
45 2cqb_A Peptidyl-prolyl CIS-tra 95.0 0.062 2.1E-06 46.4 7.7 35 320-354 54-90 (102)
46 2la6_A RNA-binding protein FUS 95.0 0.12 4.1E-06 44.4 9.4 34 320-353 63-98 (99)
47 3ex7_B RNA-binding protein 8A; 95.0 0.12 4E-06 46.6 9.7 34 320-353 64-99 (126)
48 2ywk_A Putative RNA-binding pr 95.0 0.09 3.1E-06 44.6 8.5 38 198-240 13-50 (95)
49 2dng_A Eukaryotic translation 94.9 0.14 4.8E-06 44.3 9.9 37 198-240 12-48 (103)
50 2d9p_A Polyadenylate-binding p 94.9 0.11 3.9E-06 44.8 9.2 35 320-354 55-91 (103)
51 2dnp_A RNA-binding protein 14; 94.9 0.11 3.9E-06 43.6 8.9 33 322-354 45-79 (90)
52 1x4h_A RNA-binding protein 28; 94.8 0.15 5E-06 44.7 9.8 35 199-238 13-47 (111)
53 2cpd_A Apobec-1 stimulating pr 94.8 0.17 5.9E-06 43.3 10.0 33 321-353 52-86 (99)
54 2dnq_A RNA-binding protein 4B; 94.8 0.21 7.3E-06 41.9 10.3 34 321-354 43-78 (90)
55 3nmr_A Cugbp ELAV-like family 94.7 0.15 5E-06 48.2 10.3 103 200-377 2-116 (175)
56 2cpj_A Non-POU domain-containi 94.7 0.15 5.1E-06 43.7 9.4 36 321-356 52-89 (99)
57 2kxn_B Transformer-2 protein h 94.7 0.15 5.2E-06 46.4 9.8 37 199-240 44-80 (129)
58 2cpf_A RNA binding motif prote 94.6 0.13 4.4E-06 44.0 8.8 38 199-241 3-40 (98)
59 2dgx_A KIAA0430 protein; RRM d 94.6 0.15 5E-06 43.7 9.1 33 321-353 53-87 (96)
60 3ulh_A THO complex subunit 4; 94.6 0.15 5E-06 44.4 9.2 39 197-240 25-63 (107)
61 2ku7_A MLL1 PHD3-CYP33 RRM chi 94.6 0.11 3.8E-06 47.5 8.8 34 199-237 61-94 (140)
62 2dgt_A RNA-binding protein 30; 94.6 0.15 5.3E-06 43.0 8.9 32 322-353 46-79 (92)
63 2err_A Ataxin-2-binding protei 94.5 0.11 3.6E-06 45.8 8.0 34 320-353 69-104 (109)
64 3lqv_A PRE-mRNA branch site pr 94.5 0.15 5.3E-06 45.0 9.2 36 320-355 47-84 (115)
65 2cqp_A RNA-binding protein 12; 94.5 0.065 2.2E-06 45.9 6.4 38 320-357 57-96 (98)
66 2a3j_A U1 small nuclear ribonu 94.4 0.16 5.5E-06 46.2 9.2 43 320-362 72-116 (127)
67 1x4a_A Splicing factor, argini 94.4 0.24 8.4E-06 43.2 10.2 34 320-353 61-96 (109)
68 2ytc_A PRE-mRNA-splicing facto 94.4 0.21 7.1E-06 41.3 9.2 28 198-228 9-36 (85)
69 3ns6_A Eukaryotic translation 94.4 0.085 2.9E-06 45.7 6.9 34 320-353 54-90 (100)
70 1p1t_A Cleavage stimulation fa 94.3 0.1 3.5E-06 45.1 7.5 36 320-355 50-87 (104)
71 1x4c_A Splicing factor, argini 94.3 0.18 6.1E-06 44.2 9.1 34 321-354 51-91 (108)
72 2kt5_A RNA and export factor-b 94.3 0.22 7.5E-06 44.7 9.8 35 320-354 76-112 (124)
73 1s79_A Lupus LA protein; RRM, 94.3 0.18 6.1E-06 44.0 8.8 38 198-240 8-45 (103)
74 1x4e_A RNA binding motif, sing 94.2 0.17 5.9E-06 41.9 8.4 36 199-239 3-38 (85)
75 1uaw_A Mouse-musashi-1; RNP-ty 94.2 0.15 5.1E-06 41.3 7.7 34 320-353 42-76 (77)
76 2do0_A HnRNP M, heterogeneous 94.1 0.25 8.4E-06 43.5 9.7 38 198-240 12-49 (114)
77 4f02_A Polyadenylate-binding p 94.1 0.26 8.8E-06 48.7 10.9 100 200-376 14-123 (213)
78 2cpe_A RNA-binding protein EWS 94.1 0.2 7E-06 44.0 9.1 35 319-353 64-100 (113)
79 3d2w_A TAR DNA-binding protein 94.1 0.1 3.6E-06 44.1 6.8 35 197-236 7-41 (89)
80 1x5o_A RNA binding motif, sing 94.1 0.33 1.1E-05 42.6 10.4 37 199-240 23-59 (114)
81 1wf0_A TDP-43, TAR DNA-binding 94.0 0.069 2.4E-06 44.8 5.5 26 200-228 4-29 (88)
82 1wf1_A RNA-binding protein RAL 94.0 0.18 6E-06 44.3 8.4 36 321-356 63-100 (110)
83 1x4g_A Nucleolysin TIAR; struc 93.9 0.27 9.3E-06 42.9 9.5 35 321-355 62-98 (109)
84 2cpi_A CCR4-NOT transcription 93.9 0.16 5.6E-06 44.7 8.0 34 320-353 63-98 (111)
85 2ki2_A SS-DNA binding protein 93.9 0.086 3E-06 44.3 5.9 36 320-356 43-80 (90)
86 3md3_A Nuclear and cytoplasmic 93.8 0.3 1E-05 45.4 10.2 57 320-376 41-107 (166)
87 2fc8_A NCL protein; structure 93.8 0.23 7.9E-06 42.7 8.7 36 320-355 54-91 (102)
88 3r27_A HnRNP L, heterogeneous 93.8 0.27 9.2E-06 42.8 8.9 35 197-236 17-51 (100)
89 1whx_A Hypothetical protein ri 93.8 0.14 4.8E-06 45.2 7.3 35 321-355 47-83 (111)
90 2j76_E EIF-4B, EIF4B, eukaryot 93.7 0.21 7.2E-06 43.0 8.2 35 198-238 16-50 (100)
91 1why_A Hypothetical protein ri 93.7 0.39 1.3E-05 40.9 9.9 34 321-354 54-91 (97)
92 2qfj_A FBP-interacting repress 93.7 0.45 1.5E-05 46.5 11.7 57 320-376 70-145 (216)
93 1wg5_A Heterogeneous nuclear r 93.6 0.35 1.2E-05 41.9 9.6 41 320-362 57-99 (104)
94 1wex_A Hypothetical protein (r 93.6 0.4 1.4E-05 41.9 9.9 34 321-354 52-89 (104)
95 1l3k_A Heterogeneous nuclear r 93.6 0.36 1.2E-05 46.4 10.7 38 198-240 10-47 (196)
96 2ek1_A RNA-binding protein 12; 93.6 0.1 3.4E-06 44.4 5.8 34 320-353 57-92 (95)
97 2rs2_A Musashi-1, RNA-binding 93.6 0.2 6.9E-06 44.0 7.9 36 199-239 23-58 (109)
98 2dgu_A Heterogeneous nuclear r 93.5 0.25 8.6E-06 42.7 8.4 35 321-355 46-82 (103)
99 2i2y_A Fusion protein consists 93.5 0.41 1.4E-05 44.4 10.5 36 321-356 111-148 (150)
100 3n9u_C Cleavage and polyadenyl 93.5 0.24 8.2E-06 46.7 8.8 39 200-241 54-92 (156)
101 2cjk_A Nuclear polyadenylated 93.4 0.14 4.8E-06 48.0 7.1 58 320-377 45-108 (167)
102 2e44_A Insulin-like growth fac 93.4 0.35 1.2E-05 41.0 9.0 36 321-356 55-92 (96)
103 2mss_A Protein (musashi1); RNA 93.4 0.18 6.3E-06 40.6 6.8 19 320-338 41-59 (75)
104 2f3j_A RNA and export factor b 93.4 0.24 8.2E-06 47.8 8.7 42 320-361 129-172 (177)
105 1iqt_A AUF1, heterogeneous nuc 93.3 0.12 4E-06 41.8 5.5 20 320-339 41-60 (75)
106 2kvi_A Nuclear polyadenylated 93.3 0.28 9.7E-06 41.8 8.3 34 321-354 46-81 (96)
107 2jvo_A Nucleolar protein 3; nu 93.3 0.34 1.2E-05 42.4 9.0 33 321-353 66-100 (108)
108 2dis_A Unnamed protein product 93.3 0.41 1.4E-05 41.6 9.5 34 320-353 52-89 (109)
109 1u6f_A Tcubp1, RNA-binding pro 93.3 0.3 1E-05 44.7 8.9 36 200-240 41-76 (139)
110 3sde_A Paraspeckle component 1 93.3 0.44 1.5E-05 48.7 11.1 56 321-376 59-116 (261)
111 2lea_A Serine/arginine-rich sp 93.3 0.2 6.8E-06 46.0 7.6 34 320-353 89-124 (135)
112 1nu4_A U1A RNA binding domain; 93.2 0.25 8.7E-06 41.9 7.7 39 321-359 52-92 (97)
113 1rk8_A CG8781-PA, CG8781-PA pr 93.0 0.36 1.2E-05 45.7 9.4 38 198-240 69-106 (165)
114 1x4f_A Matrin 3; structural ge 93.0 0.35 1.2E-05 43.0 8.6 40 321-360 63-106 (112)
115 2kn4_A Immunoglobulin G-bindin 93.0 0.37 1.2E-05 45.1 9.3 34 320-353 112-147 (158)
116 2jwn_A Embryonic polyadenylate 93.0 0.34 1.2E-05 43.3 8.7 35 201-240 36-70 (124)
117 3beg_B Splicing factor, argini 92.9 0.31 1.1E-05 43.2 8.2 22 321-342 52-73 (115)
118 1x4b_A Heterogeneous nuclear r 92.8 0.37 1.3E-05 42.5 8.5 34 201-239 27-60 (116)
119 1x4d_A Matrin 3; structural ge 92.8 0.36 1.2E-05 42.1 8.2 36 321-356 53-92 (102)
120 2cpy_A RNA-binding protein 12; 92.8 0.22 7.4E-06 44.1 6.9 28 198-228 12-39 (114)
121 2dnl_A Cytoplasmic polyadenyla 92.8 0.2 6.7E-06 44.4 6.6 28 199-229 6-33 (114)
122 2lmi_A GRSF-1, G-rich sequence 92.7 0.32 1.1E-05 42.4 7.9 28 198-228 8-35 (107)
123 2adc_A Polypyrimidine tract-bi 92.6 0.64 2.2E-05 46.4 11.0 35 198-237 31-66 (229)
124 2la4_A Nuclear and cytoplasmic 92.5 0.42 1.4E-05 40.9 8.3 33 321-353 64-98 (101)
125 2hvz_A Splicing factor, argini 92.5 0.41 1.4E-05 41.0 8.2 33 321-353 38-72 (101)
126 2xnq_A Nuclear polyadenylated 92.5 0.74 2.5E-05 39.3 9.8 33 321-353 58-92 (97)
127 3smz_A Protein raver-1, ribonu 92.4 0.67 2.3E-05 47.7 11.1 58 320-377 57-116 (284)
128 2m2b_A RNA-binding protein 10; 92.3 0.25 8.5E-06 44.9 6.8 27 199-228 21-47 (131)
129 3md3_A Nuclear and cytoplasmic 92.2 0.58 2E-05 43.4 9.5 38 198-240 84-121 (166)
130 2dnn_A RNA-binding protein 12; 92.1 0.28 9.5E-06 43.3 6.7 34 200-239 15-48 (109)
131 2nlw_A Eukaryotic translation 92.0 0.83 2.8E-05 39.6 9.6 36 320-355 61-99 (105)
132 3tyt_A Heterogeneous nuclear r 91.9 1.1 3.7E-05 44.1 11.5 34 199-237 2-36 (205)
133 1b7f_A Protein (SXL-lethal pro 91.9 0.66 2.3E-05 43.2 9.6 37 199-240 87-123 (168)
134 2qfj_A FBP-interacting repress 91.6 0.7 2.4E-05 45.1 9.8 36 200-240 124-159 (216)
135 2pe8_A Splicing factor 45; RRM 91.2 1.1 3.7E-05 39.1 9.5 36 320-355 56-93 (105)
136 1qm9_A Polypyrimidine tract-bi 91.2 0.65 2.2E-05 44.8 9.0 26 200-228 2-28 (198)
137 3nmr_A Cugbp ELAV-like family 91.1 0.91 3.1E-05 42.5 9.7 36 199-239 93-128 (175)
138 2diu_A KIAA0430 protein; struc 91.1 0.26 9E-06 42.3 5.0 41 321-361 47-89 (96)
139 1fxl_A Paraneoplastic encephal 91.0 0.86 2.9E-05 42.2 9.3 36 199-239 86-121 (167)
140 2hgm_A HNRPF protein, heteroge 90.8 0.54 1.9E-05 42.7 7.3 27 199-228 40-66 (126)
141 1wel_A RNA-binding protein 12; 90.8 0.28 9.7E-06 44.0 5.4 33 320-353 67-101 (124)
142 3q2s_C Cleavage and polyadenyl 90.7 0.58 2E-05 47.0 8.2 39 200-241 67-105 (229)
143 2g4b_A Splicing factor U2AF 65 90.1 0.85 2.9E-05 42.7 8.5 37 199-240 92-128 (172)
144 1l3k_A Heterogeneous nuclear r 88.5 1.4 4.8E-05 42.1 8.9 37 199-240 102-138 (196)
145 2cjk_A Nuclear polyadenylated 88.5 1.1 3.6E-05 41.8 7.7 33 320-353 129-163 (167)
146 2wbr_A GW182, gawky, LD47780P; 88.2 2.2 7.5E-05 36.1 8.5 33 321-353 44-78 (89)
147 3pgw_S U1-70K; protein-RNA com 88.1 1.3 4.4E-05 49.1 9.2 36 320-355 144-181 (437)
148 4f02_A Polyadenylate-binding p 87.8 1.6 5.6E-05 42.8 8.9 35 201-240 103-137 (213)
149 2ghp_A U4/U6 snRNA-associated 87.7 1.8 6.2E-05 44.5 9.6 57 320-378 81-139 (292)
150 2yh0_A Splicing factor U2AF 65 87.3 1.9 6.7E-05 41.2 9.0 34 320-353 156-191 (198)
151 3pgw_A U1-A; protein-RNA compl 86.9 4.3 0.00015 41.4 11.9 30 199-228 7-37 (282)
152 3smz_A Protein raver-1, ribonu 86.8 0.57 1.9E-05 48.2 5.0 40 198-242 92-131 (284)
153 1jmt_A Splicing factor U2AF 35 85.9 1.9 6.3E-05 37.5 7.2 36 319-354 67-104 (104)
154 3pgw_A U1-A; protein-RNA compl 84.3 2.9 0.0001 42.7 9.1 33 321-353 245-280 (282)
155 3s7r_A Heterogeneous nuclear r 83.4 1.6 5.6E-05 35.9 5.5 39 198-241 8-46 (87)
156 2dit_A HIV TAT specific factor 83.2 3.6 0.00012 35.8 8.0 45 319-363 63-109 (112)
157 1qm9_A Polypyrimidine tract-bi 83.1 3 0.0001 40.0 8.2 34 321-354 159-195 (198)
158 2adc_A Polypyrimidine tract-bi 82.2 5.2 0.00018 39.6 9.7 34 321-354 190-226 (229)
159 2d9o_A DNAJ (HSP40) homolog, s 81.9 1.8 6.1E-05 37.5 5.2 35 320-354 54-88 (100)
160 3sde_A Paraspeckle component 1 81.4 4.4 0.00015 41.0 9.0 36 200-240 95-130 (261)
161 1wg1_A KIAA1579 protein, homol 78.3 1.3 4.4E-05 36.9 3.0 37 321-357 41-79 (88)
162 3s6e_A RNA-binding protein 39; 78.3 3.4 0.00012 36.6 5.9 57 298-354 27-91 (114)
163 3v4m_A Splicing factor U2AF 65 77.3 5.3 0.00018 34.6 6.9 36 319-354 58-95 (105)
164 2dgw_A Probable RNA-binding pr 77.1 3.2 0.00011 34.5 5.2 38 198-241 7-44 (91)
165 2dha_A FLJ20171 protein; RRM d 75.5 2.5 8.6E-05 38.0 4.3 40 199-241 21-62 (123)
166 2ghp_A U4/U6 snRNA-associated 75.1 4.9 0.00017 41.2 7.1 34 319-353 253-288 (292)
167 2dh8_A DAZ-associated protein 74.1 3.4 0.00012 35.3 4.7 39 198-241 13-51 (105)
168 2e5j_A Methenyltetrahydrofolat 73.5 4.6 0.00016 34.0 5.3 37 320-356 56-94 (97)
169 2xs2_A Deleted in azoospermia- 72.3 3.6 0.00012 35.0 4.4 38 199-241 7-44 (102)
170 3tyt_A Heterogeneous nuclear r 71.6 6.6 0.00023 38.3 6.7 24 320-343 165-188 (205)
171 1sjq_A Polypyrimidine tract-bi 71.0 4.1 0.00014 35.5 4.5 37 199-240 14-50 (105)
172 2cq1_A PTB-like protein L; RRM 70.4 5.7 0.0002 34.1 5.3 36 199-239 13-48 (101)
173 1wez_A HnRNP H', FTP-3, hetero 69.7 5.3 0.00018 34.2 4.9 37 199-241 13-49 (102)
174 2ad9_A Polypyrimidine tract-bi 68.6 5 0.00017 35.8 4.6 38 198-240 28-65 (119)
175 2db1_A Heterogeneous nuclear r 68.6 4.7 0.00016 35.5 4.4 40 199-241 15-55 (118)
176 2cqh_A IGF-II mRNA-binding pro 68.0 3.7 0.00013 34.2 3.5 34 321-354 45-81 (93)
177 1fj7_A Nucleolin RBD1, protein 67.9 7.7 0.00026 32.7 5.6 33 320-353 58-92 (101)
178 2cq4_A RNA binding motif prote 67.5 4.9 0.00017 34.9 4.3 35 201-240 25-59 (114)
179 2fc9_A NCL protein; structure 67.5 5.3 0.00018 33.8 4.4 35 319-353 52-88 (101)
180 2cpx_A Hypothetical protein FL 67.3 7.3 0.00025 33.7 5.4 34 320-353 67-102 (115)
181 2jvr_A Nucleolar protein 3; RN 67.2 4.9 0.00017 35.3 4.2 35 320-354 67-103 (111)
182 1fjc_A Nucleolin RBD2, protein 67.1 3.9 0.00013 34.2 3.4 35 320-354 53-89 (96)
183 1x5p_A Negative elongation fac 66.7 5.1 0.00017 33.7 4.1 35 320-354 49-85 (97)
184 2krb_A Eukaryotic translation 62.5 6.3 0.00021 31.8 3.7 24 320-343 47-70 (81)
185 2hgl_A HNRPF protein, heteroge 61.1 7.6 0.00026 35.4 4.4 40 199-241 42-82 (136)
186 2bz2_A Negative elongation fac 59.8 9.9 0.00034 33.7 4.9 36 320-355 73-110 (121)
187 1sjr_A Polypyrimidine tract-bi 56.9 11 0.00036 35.7 4.7 34 321-354 85-122 (164)
188 2e5g_A U6 snRNA-specific termi 56.9 9.3 0.00032 31.8 3.9 34 322-356 47-82 (94)
189 2dgw_A Probable RNA-binding pr 56.5 7.5 0.00026 32.1 3.3 34 319-353 49-84 (91)
190 2cq1_A PTB-like protein L; RRM 56.2 8 0.00027 33.2 3.4 35 320-354 51-89 (101)
191 2voo_A Lupus LA protein; RNA-b 55.5 9.7 0.00033 36.8 4.3 36 201-241 109-144 (193)
192 3ue2_A Poly(U)-binding-splicin 55.1 6.9 0.00024 34.7 2.9 36 320-355 71-108 (118)
193 2krb_A Eukaryotic translation 54.3 14 0.00046 29.7 4.4 36 202-239 2-40 (81)
194 1fje_B Nucleolin RBD12, protei 54.1 8.9 0.00031 35.6 3.8 35 319-353 135-171 (175)
195 2hgn_A Heterogeneous nuclear r 54.1 6.4 0.00022 36.1 2.6 36 199-240 44-79 (139)
196 1l8d_A DNA double-strand break 53.9 34 0.0012 29.7 7.3 33 279-311 48-86 (112)
197 3he5_A Synzip1; heterodimeric 53.1 24 0.00081 24.7 4.6 21 287-307 29-49 (49)
198 1sjq_A Polypyrimidine tract-bi 52.5 12 0.0004 32.6 3.9 35 320-354 52-90 (105)
199 3s7r_A Heterogeneous nuclear r 52.4 6.8 0.00023 32.0 2.3 21 319-339 52-72 (87)
200 2dhx_A Poly (ADP-ribose) polym 51.4 16 0.00053 31.7 4.3 35 200-237 7-44 (104)
201 2ad9_A Polypyrimidine tract-bi 50.9 11 0.00036 33.7 3.4 34 321-354 68-105 (119)
202 2g4b_A Splicing factor U2AF 65 50.0 29 0.00098 31.8 6.6 56 321-377 52-115 (172)
203 2cq2_A Hypothetical protein LO 50.0 11 0.00037 33.3 3.3 23 321-343 64-86 (114)
204 1wg1_A KIAA1579 protein, homol 50.0 13 0.00043 30.5 3.6 33 200-238 4-36 (88)
205 2e5g_A U6 snRNA-specific termi 49.8 24 0.00083 29.1 5.5 33 199-236 6-38 (94)
206 1fje_B Nucleolin RBD12, protei 49.6 22 0.00074 32.9 5.7 57 320-377 54-120 (175)
207 2hzc_A Splicing factor U2AF 65 48.4 17 0.00058 29.4 4.2 26 200-228 5-30 (87)
208 3egn_A RNA-binding protein 40; 47.8 11 0.00037 34.1 3.1 34 320-353 92-127 (143)
209 3u1l_A PRE-mRNA-splicing facto 47.7 17 0.00058 36.5 4.7 23 321-343 180-202 (240)
210 1wez_A HnRNP H', FTP-3, hetero 47.6 13 0.00044 31.7 3.4 21 319-339 54-74 (102)
211 2hzc_A Splicing factor U2AF 65 47.5 13 0.00046 30.0 3.4 21 320-341 53-73 (87)
212 2diu_A KIAA0430 protein; struc 47.1 20 0.0007 30.6 4.4 38 198-236 6-44 (96)
213 2dh8_A DAZ-associated protein 47.0 9.8 0.00034 32.3 2.5 34 319-353 57-92 (105)
214 2e5i_A Heterogeneous nuclear r 46.6 24 0.00082 31.5 5.1 37 321-357 62-103 (124)
215 2cq4_A RNA binding motif prote 41.6 13 0.00043 32.2 2.4 34 319-353 66-101 (114)
216 3zzy_A Polypyrimidine tract-bi 40.9 20 0.00067 32.4 3.6 35 322-356 68-106 (130)
217 2fc9_A NCL protein; structure 40.7 20 0.0007 30.0 3.6 28 198-228 12-39 (101)
218 2yh0_A Splicing factor U2AF 65 39.9 31 0.001 32.4 5.1 26 200-228 3-28 (198)
219 2lcw_A RNA-binding protein FUS 45.1 6.4 0.00022 34.3 0.0 27 199-228 5-31 (116)
220 2jvr_A Nucleolar protein 3; RN 38.3 20 0.00069 31.2 3.2 36 199-238 26-61 (111)
221 2hgl_A HNRPF protein, heteroge 37.8 17 0.00059 32.9 2.7 34 319-353 87-122 (136)
222 2e5j_A Methenyltetrahydrofolat 36.9 30 0.001 28.7 4.0 29 199-230 17-45 (97)
223 2lcw_A RNA-binding protein FUS 42.7 7.4 0.00025 33.9 0.0 35 319-353 56-92 (116)
224 2cqh_A IGF-II mRNA-binding pro 35.8 25 0.00086 28.8 3.3 29 199-230 6-34 (93)
225 2db1_A Heterogeneous nuclear r 34.9 18 0.0006 31.7 2.3 20 319-338 60-79 (118)
226 2j8a_A Histone-lysine N-methyl 34.8 37 0.0013 30.8 4.3 37 202-243 3-43 (136)
227 2hgn_A Heterogeneous nuclear r 34.2 26 0.0009 31.8 3.4 20 319-338 85-104 (139)
228 3ue2_A Poly(U)-binding-splicin 34.2 35 0.0012 30.1 4.1 41 200-242 19-61 (118)
229 1fjc_A Nucleolin RBD2, protein 32.1 33 0.0011 28.2 3.5 28 198-228 13-40 (96)
230 2dnr_A Synaptojanin-1; RRM dom 30.9 39 0.0013 28.5 3.6 32 321-353 50-83 (91)
231 2xs2_A Deleted in azoospermia- 30.6 12 0.0004 31.6 0.3 20 319-338 49-68 (102)
232 2cpx_A Hypothetical protein FL 28.4 38 0.0013 28.9 3.3 27 199-228 23-49 (115)
233 2dha_A FLJ20171 protein; RRM d 28.0 22 0.00074 31.7 1.6 21 319-339 67-87 (123)
234 1fj7_A Nucleolin RBD1, protein 27.5 35 0.0012 28.4 2.8 26 200-228 16-41 (101)
235 3dxb_A Thioredoxin N-terminall 27.2 42 0.0014 32.6 3.8 37 319-355 174-212 (222)
236 2kn4_A Immunoglobulin G-bindin 27.1 81 0.0028 28.5 5.6 60 319-378 12-92 (158)
237 2dhx_A Poly (ADP-ribose) polym 23.9 1.2E+02 0.0041 26.2 5.4 45 321-365 48-95 (104)
238 2voo_A Lupus LA protein; RNA-b 23.1 41 0.0014 32.3 2.7 22 319-340 149-170 (193)
239 3tht_A Alkylated DNA repair pr 21.8 55 0.0019 34.7 3.5 23 321-343 57-79 (345)
240 2rdd_B UPF0092 membrane protei 20.2 49 0.0017 22.8 1.8 17 584-600 4-20 (37)
No 1
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.42 E-value=0.029 Score=47.84 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=29.5
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRD 358 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~D 358 (772)
.+.|||+|.+..+|..|.+.+... +...+.|++|.++.+
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 47 KGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp CSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 489999999999999999876543 345677777755443
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.37 E-value=0.014 Score=50.70 Aligned_cols=38 Identities=8% Similarity=0.188 Sum_probs=28.9
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEec
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~ 241 (772)
.+..+|.|.|||.+.++ +.|+++|+++ |.+.++.+.+|
T Consensus 17 ~~gt~lfV~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d 54 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQ---DELRSLFSSI--GEVESAKLIRD 54 (99)
T ss_dssp CCCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEeEeeec
Confidence 34568999999998775 7888999876 56767766543
No 3
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=96.30 E-value=0.0078 Score=52.11 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=26.2
Q ss_pred CCeEEEEecCHHHHHHHHHhccCCC------CCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTRN------PTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~~------p~~~~v~~A 353 (772)
.|.|||+|.+..+|+.|.+.+.... ...+.|+.|
T Consensus 53 rG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 53 RGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred ceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence 4899999999999999998876543 234556665
No 4
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.09 E-value=0.027 Score=49.67 Aligned_cols=84 Identities=12% Similarity=0.111 Sum_probs=60.0
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCccc
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMK 277 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~Le~~~~k~~r~~~~Rp~~r 277 (772)
.+..+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|-.
T Consensus 23 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITE---DMLRGIFEPF--GRIESIQLMMDSE---------------------------------- 63 (108)
T ss_dssp CSSCEEEEEECCCSSCCH---HHHHHHHTTT--SCEEEEEEEEETT----------------------------------
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEcCC----------------------------------
Confidence 456789999999998765 7788999876 4566666554310
Q ss_pred ccccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 278 TGFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 278 ~g~~g~~g~kvDaI~~~~~~i~~L~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
.| . ..|.|||+|.+..+|..|.+.+... +...+.++.|-+
T Consensus 64 ------~g-----------------------------~---~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 64 ------TG-----------------------------R---SKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp ------TT-----------------------------E---EEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred ------CC-----------------------------c---cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 00 0 2479999999999999999876553 345677888766
Q ss_pred CCC
Q 004125 356 PRD 358 (772)
Q Consensus 356 P~D 358 (772)
..|
T Consensus 106 k~d 108 (108)
T 2jrs_A 106 RTD 108 (108)
T ss_dssp SCC
T ss_pred CCC
Confidence 554
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.01 E-value=0.025 Score=50.22 Aligned_cols=80 Identities=10% Similarity=0.053 Sum_probs=58.8
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCcccc
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKT 278 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~Le~~~~k~~r~~~~Rp~~r~ 278 (772)
+..+||.|.|+|.+.++ +.|+++|+++ |.+.++.+.+|-. +
T Consensus 4 ~p~~~lfV~nL~~~~te---~~L~~~F~~~--G~i~~v~i~~d~~-------------------------------t--- 44 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRE---TFLKDMCRKY--GEVEEVEILLHPR-------------------------------T--- 44 (110)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECTT-------------------------------T---
T ss_pred CCCcEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEECCC-------------------------------C---
Confidence 45679999999998775 7888999876 6677777765410 0
Q ss_pred cccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 279 GFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 279 g~~g~~g~kvDaI~~~~~~i~~L~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
.. ..|.|||+|++..+|+.|.+.+... ....+.|+.|+.
T Consensus 45 -----------------------------------g~---~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 45 -----------------------------------RK---HLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp -----------------------------------CC---EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred -----------------------------------Cc---eeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 00 2489999999999999999877654 344567777753
No 6
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.87 E-value=0.037 Score=47.86 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=26.8
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
.+.|||+|.+..+|..|.+.+... +...+.|++|-
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 54 RGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 489999999999999999776543 34456677663
No 7
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=95.86 E-value=0.031 Score=46.73 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=27.1
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
++.+||.|.|||.+.++ +.|+++|+.. |.+.++.+.+
T Consensus 4 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 40 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITT---AAIAAAFAPF--GRISDARVVK 40 (87)
T ss_dssp --CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCceEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEe
Confidence 45689999999998765 7788999876 4566666554
No 8
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=95.80 E-value=0.037 Score=46.00 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=26.2
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEE
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i 238 (772)
++.+||.|.|||.+.++ +.|+++|+.+ |.+.++.+
T Consensus 5 ~~~~~l~V~nl~~~~~~---~~l~~~f~~~--G~i~~v~i 39 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQI 39 (85)
T ss_dssp CCSSEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHhcc--CCEEEEEE
Confidence 46689999999998765 7788888876 44555444
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=95.79 E-value=0.06 Score=50.41 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=39.5
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC------CCCeeecccccchhHHHHHHHH
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE------PRDVYWQNLAIPYVSLSVRRLI 377 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe------P~DIiW~NL~~~~~~r~~R~~~ 377 (772)
.|.|||+|.+..+|..|.+.+... ....+.+++|.. ...++-.||.....+..++.++
T Consensus 44 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 109 (167)
T 1fxl_A 44 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 109 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHH
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHH
Confidence 479999999999999999876543 233455665543 2347888887766665555543
No 10
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.77 E-value=0.043 Score=46.60 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=27.8
Q ss_pred CCCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEE
Q 004125 197 RRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (772)
Q Consensus 197 ~~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~ 239 (772)
..++.++|.|.|||.+.++ +.|+++|+++ |.+.++.+.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~ 49 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTN---NDLYRIFSKY--GKVVKVTIM 49 (94)
T ss_dssp CCCCTTSEEEESCCTTSCH---HHHHHHTTTT--SCEEEEEEC
T ss_pred CCCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 3456789999999998765 7788899776 445555543
No 11
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.76 E-value=0.063 Score=46.61 Aligned_cols=36 Identities=19% Similarity=0.003 Sum_probs=27.7
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
.+.|||+|.+..+|..|.+.+... +...+.++.|-.
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 57 QGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp CSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 479999999999999999876543 345567777643
No 12
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.76 E-value=0.084 Score=45.33 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=27.8
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEE
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~ 239 (772)
....+||.|.|||.+.++ +.|+++|+++ |.+.++.+.
T Consensus 7 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~ 43 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGE---TELREYFKKF--GVVTEVVMI 43 (99)
T ss_dssp CSSCCEEEEESCCSSCCH---HHHHHHHSSS--SCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 346689999999998765 7789999876 456555543
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.71 E-value=0.055 Score=46.44 Aligned_cols=37 Identities=14% Similarity=-0.055 Sum_probs=27.7
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP 356 (772)
.+.|||+|.+..+|..|.+.+... +...+.|++|-.+
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 50 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp CSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 489999999999999999776542 3445667776443
No 14
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=95.70 E-value=0.02 Score=48.56 Aligned_cols=37 Identities=11% Similarity=-0.075 Sum_probs=25.5
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP 356 (772)
.|.|||+|.+..+|..|.+.+... +...+.|+.|..|
T Consensus 45 kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 45 KGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp EEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 479999999999999999877653 3445667766444
No 15
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=95.62 E-value=0.015 Score=49.69 Aligned_cols=35 Identities=17% Similarity=0.044 Sum_probs=26.0
Q ss_pred CCCeEEEEecCHHHHHHHHHhccC---CCCCcceeeeC
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQT---RNPTLWLTEWA 353 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~---~~p~~~~v~~A 353 (772)
..|.|||+|.+..+|..|.+...+ -+...+.++.|
T Consensus 43 ~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 43 SRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred cCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 358999999999999999876532 23455667765
No 16
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.59 E-value=0.11 Score=44.97 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=26.8
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
.+.|||+|.+..+|..|.+.+... +...+.|+.|-.
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 55 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 379999999999999998876543 344566766643
No 17
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=95.57 E-value=0.09 Score=45.61 Aligned_cols=38 Identities=16% Similarity=0.027 Sum_probs=28.4
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
.+..+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 49 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSE---EDVLRLFQPF--GVIDECTVLR 49 (105)
T ss_dssp CCCCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 456789999999998765 7788999876 4466665543
No 18
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=95.56 E-value=0.048 Score=48.40 Aligned_cols=38 Identities=11% Similarity=0.345 Sum_probs=28.1
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
.+..+||.|.|||.+.++ +.|+++|+++ +.+.++.+.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 59 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGD---QDLLQMFMPF--GNVVSAKVFI 59 (115)
T ss_dssp CSTTCCEEEESCCSSCCH---HHHHHHHGGG--SCCSEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 345689999999998765 7788899876 4455555543
No 19
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=95.53 E-value=0.081 Score=46.80 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=28.9
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
....+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 49 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITT---EDIKAAFAPF--GRISDARVVK 49 (115)
T ss_dssp STTCEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 346789999999998765 7788899876 4566666554
No 20
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=95.51 E-value=0.061 Score=45.96 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=27.6
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
.|.|||+|.+..+|..|.+.+... +...+.++.|-+
T Consensus 44 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 44 KGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 489999999999999999876543 345567777743
No 21
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=95.48 E-value=0.033 Score=46.61 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=27.3
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP 356 (772)
.+.|||+|.+..+|..|.+.+... +...+.++.|-.|
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 47 KGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred CcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 489999999999999999876543 3345666665433
No 22
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.46 E-value=0.055 Score=46.13 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=26.9
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
.+.|||+|.+..+|..|.+.+... +...+.+++|-
T Consensus 48 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 48 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 489999999999999999876543 34456677763
No 23
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=95.46 E-value=0.076 Score=46.18 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=27.7
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC-----CCCcceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR-----NPTLWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~-----~p~~~~v~~APe 355 (772)
.+.|||+|.+..+|..|.+.+... ....+.+++|-.
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 55 KGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 489999999999999999876553 335667777643
No 24
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.45 E-value=0.076 Score=45.97 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=28.8
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
....+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~ 49 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRE---TDLQELFRPF--GSISRIYLAK 49 (103)
T ss_dssp CSSSEEEEEESCCTTCCH---HHHHTTSTTT--CCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEee
Confidence 456789999999998765 7889999876 4566666543
No 25
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=95.44 E-value=0.073 Score=43.92 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=26.4
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
.+.|||+|.+..+|..|.+.+... +...+.+++|-
T Consensus 43 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 43 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 479999999999999999876543 33456666663
No 26
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=95.38 E-value=0.11 Score=46.33 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=26.4
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
.+.|||+|.+..+|..|.+.+... +...+.|+.|-
T Consensus 48 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 48 RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 489999999999999999876543 33456666653
No 27
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.37 E-value=0.08 Score=46.98 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=27.4
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEE
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~ 239 (772)
....+||.|.|||.+.++ +.|+++|+++ +.+.++.+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~ 50 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTD---ASLRKYFEGF--GDIEEAVVI 50 (116)
T ss_dssp SCSSSEEEEECCCSSCCH---HHHHHHHHTT--SCEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeeEEEEE
Confidence 345689999999998765 7788888876 445555543
No 28
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=95.35 E-value=0.091 Score=44.30 Aligned_cols=37 Identities=11% Similarity=-0.067 Sum_probs=27.2
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP 356 (772)
.+.|||+|.+..+|..|.+.+... +...+.++.|-.+
T Consensus 48 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 48 KGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 378999999999999998876543 3345666666433
No 29
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=95.35 E-value=0.086 Score=45.83 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=28.6
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
....+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~ 57 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATE---EDIHDKFAEY--GEIKNIHLNL 57 (106)
T ss_dssp BTTBEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCeEEEEEEe
Confidence 345689999999998765 7788899877 5566666554
No 30
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.35 E-value=0.088 Score=45.29 Aligned_cols=36 Identities=8% Similarity=0.084 Sum_probs=27.0
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
.+.|||+|.+..+|..|.+.+... +...+.++.|-.
T Consensus 58 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 58 KGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred EeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 379999999999999998776542 345567777643
No 31
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.35 E-value=0.09 Score=45.49 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=26.5
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
+.|||+|.+..+|..|.+.+... ....+.|++|-.
T Consensus 56 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 56 PYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 79999999999999998866542 344566777643
No 32
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.34 E-value=0.058 Score=45.84 Aligned_cols=38 Identities=11% Similarity=-0.017 Sum_probs=28.4
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
.+..+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~ 49 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVY 49 (95)
T ss_dssp CCGGGCEEEESCCSSCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEE
Confidence 346789999999998765 6788888876 4566666544
No 33
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=95.31 E-value=0.077 Score=47.20 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=27.5
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
+..+|.|.|||.+.++ +.|+++|+++ |.+.++.+++
T Consensus 4 ~~~~lfV~nLp~~~te---~~L~~~F~~~--G~v~~v~i~~ 39 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVC 39 (115)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCEEEECCCCCCCCH---HHHHHHHhcc--CCEEEEEEee
Confidence 3458999999998775 7889999877 5666666654
No 34
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.30 E-value=0.078 Score=45.90 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=26.4
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
.+.|||+|.+..+|..|.+.+... +...+.|++|-
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 55 RGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 489999999999999999876543 33456666653
No 35
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.27 E-value=0.12 Score=44.91 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=27.6
Q ss_pred CCeEEEEecCHHHHHHHHHhc-cCC--CCCcceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQ-QTR--NPTLWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~-~~~--~p~~~~v~~APe 355 (772)
.+.|||+|.+..+|..|.+.+ ... +...+.+++|-.
T Consensus 58 ~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 58 RGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp CSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred CceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence 489999999999999999876 332 345677777743
No 36
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.27 E-value=0.083 Score=49.61 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=40.2
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC------CCCCeeecccccchhHHHHHHHH
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS------EPRDVYWQNLAIPYVSLSVRRLI 377 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP------eP~DIiW~NL~~~~~~r~~R~~~ 377 (772)
.|.|||+|.+..+|..|.+.+... ....+.+++|. ...-|+-.||.....+..++.++
T Consensus 45 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 110 (168)
T 1b7f_A 45 YGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIF 110 (168)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhh
Confidence 489999999999999998865543 23345555543 34458888888776666555543
No 37
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.22 E-value=0.092 Score=45.00 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=27.6
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCcee-EEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYL-THQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~-~v~i~~ 240 (772)
.....||.|.|||.+.++ +.|+++|+++ |.+. ++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~v~i~~ 44 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDE---NFISRAFATM--GETVMSVKIIR 44 (99)
T ss_dssp CSSSSEEEECSCCTTCCH---HHHHHHHHHT--TCCCCEEEEEE
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHHh--CCcceEEEEee
Confidence 445689999999998765 7788888876 4444 555543
No 38
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.20 E-value=0.077 Score=45.95 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
...+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 13 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTE---QDLKEYFSTF--GEVLMVQVKK 49 (103)
T ss_dssp CCCCCEEEESCCSSCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCeEEEEEEe
Confidence 45689999999998765 7789999877 4566666554
No 39
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=95.14 E-value=0.079 Score=47.14 Aligned_cols=37 Identities=14% Similarity=0.321 Sum_probs=27.5
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEE
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~ 239 (772)
.+..+||.|.|||.+.++ +.|+++|+++ |.+.++.+.
T Consensus 37 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~ 73 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTD---TDLASTFLPF--GNVISAKVF 73 (118)
T ss_dssp CCCSEEEEEECSCTTCCH---HHHHHHTTTS--CEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEE
Confidence 456689999999998765 7889999876 455555443
No 40
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.13 E-value=0.12 Score=44.81 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=27.2
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEE
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~ 239 (772)
....+||.|.|||.+.++ +.|+++|+.+ + +.++.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G-i~~v~i~ 47 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLP 47 (104)
T ss_dssp SSSCEEEEEESCCSSCCH---HHHHHHTTTS--C-EEEEECC
T ss_pred CCCCCEEEEeCCCCcCCH---HHHHHHHHHC--C-ceEEEEe
Confidence 345689999999998765 7889999876 4 6555543
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=95.11 E-value=0.094 Score=45.98 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=25.6
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.|.|||+|.+..+|..|.+.+... +...+.|++|
T Consensus 68 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 68 KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 489999999999999998876543 3344566655
No 42
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=95.10 E-value=0.097 Score=49.13 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=56.8
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCcccc
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKT 278 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~Le~~~~k~~r~~~~Rp~~r~ 278 (772)
....||.|.|||.+.++ +.|+++|+.+ +.+.++.+.+|-.
T Consensus 37 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~~----------------------------------- 76 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTE---EQIYELFSKS--GDIKKIIMGLDKM----------------------------------- 76 (156)
T ss_dssp TTCCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC-----------------------------------
Confidence 45689999999998765 7788999877 4566666654310
Q ss_pred cccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 279 GFLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 279 g~~g~~g~kvDaI~~~~~~i~~L~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
... ..+.|||+|.+..+|..|.+.+... +...+.|++|..
T Consensus 77 ----------------------------------~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 77 ----------------------------------KKT---ACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp ----------------------------------TCC---EEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred ----------------------------------CCc---cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 000 2379999999999999999876543 345567777743
No 43
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.03 E-value=0.12 Score=44.81 Aligned_cols=38 Identities=21% Similarity=0.457 Sum_probs=28.1
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhc-cCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLV-NHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~-~~p~~v~~v~i~~ 240 (772)
....+||.|.|||.+.++ +.|+++|+. + +.+.++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~~--G~v~~v~i~~ 44 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDD---GMLYEFFVKVY--PSCRGGKVVL 44 (104)
T ss_dssp SSCCCCEEEECCCTTCCH---HHHHHHHHHHC--TTEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHHhC--CCeEEEEEEE
Confidence 345689999999998765 778888887 5 4566665543
No 44
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=95.02 E-value=0.091 Score=43.95 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=27.2
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
+.+||.|.|||.+.++ +.|+++|+.. |.+.++.+.+
T Consensus 5 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 40 (89)
T 3ucg_A 5 DARSIYVGNVDYGATA---EELEAHFHGC--GSVNRVTILC 40 (89)
T ss_dssp HHTEEEEESCCTTCCH---HHHHHHHGGG--CCEEEEEEEE
T ss_pred cCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEe
Confidence 3579999999998765 7788999876 4566666554
No 45
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.99 E-value=0.062 Score=46.39 Aligned_cols=35 Identities=20% Similarity=0.062 Sum_probs=26.0
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
.+.|||+|.+..+|..|.+.+... +...+.|++|-
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 54 RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp SSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 489999999999999998765432 33455666653
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=94.97 E-value=0.12 Score=44.36 Aligned_cols=34 Identities=18% Similarity=0.060 Sum_probs=25.3
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.|.|||+|.+..+|+.|.+.+... +...+.++.|
T Consensus 63 ~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 63 KGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 479999999999999999876543 3344555554
No 47
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=94.95 E-value=0.12 Score=46.56 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=25.8
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.+.|||+|.+..+|..|.+.+... +...+.|++|
T Consensus 64 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 64 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp CSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 489999999999999999876543 3345566655
No 48
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=94.95 E-value=0.09 Score=44.63 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=28.4
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
....+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~---~~l~~~F~~~--G~i~~v~i~~ 50 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVRE---EILYELFLQA--GPLTKVTICK 50 (95)
T ss_dssp TTGGGEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEEE
Confidence 346789999999998765 7788999876 4566665543
No 49
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.94 E-value=0.14 Score=44.27 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=28.8
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
....+||.|.|||.+.++ +.|+++|+.+ + +.++.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g-i~~v~i~~ 48 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQ---GDIDAIFKDL--S-IRSVRLVR 48 (103)
T ss_dssp SSSCEEEEEESCCTTCCH---HHHHHHTTTS--C-EEEEEEEE
T ss_pred CCCCeEEEEeCCCCCCCH---HHHHHHHHhC--C-ceEEEEee
Confidence 345689999999998775 7899999876 4 76776654
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.90 E-value=0.11 Score=44.80 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=26.6
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
.+.|||+|.+..+|..|.+.+... +...+.|++|-
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 55 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 378999999999999999876543 34556677663
No 51
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.89 E-value=0.11 Score=43.63 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=25.0
Q ss_pred eEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 322 AAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 322 ~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
.|||+|.+..+|..|.+.+... +...+.++.|-
T Consensus 45 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 45 YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 7999999999999998876543 34456666663
No 52
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.84 E-value=0.15 Score=44.69 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=26.0
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEE
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i 238 (772)
...+||.|.|||.+.++ +.|+++|+.+ |.+.++.+
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i 47 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEE---EALGEVLQQF--GDLKYVRV 47 (111)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEE
Confidence 35689999999998765 7788888776 44555544
No 53
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.80 E-value=0.17 Score=43.34 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=25.1
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
+.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 52 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 52 DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 58999999999999999866543 3345666665
No 54
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.75 E-value=0.21 Score=41.89 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=25.7
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
+.|||+|.+..+|..|.+.+... +...+.+++|-
T Consensus 43 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 43 NYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 58999999999999998766543 34556676653
No 55
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=94.74 E-value=0.15 Score=48.16 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=68.3
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCccccc
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTG 279 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~Le~~~~k~~r~~~~Rp~~r~g 279 (772)
+++||.|.|||.+.++ +.|+++|+++ |.+.++.+.++..
T Consensus 2 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~~------------------------------------ 40 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSE---KDLRELFEQY--GAVYEINVLRDRS------------------------------------ 40 (175)
T ss_dssp CCEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEECS------------------------------------
T ss_pred CceEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEecCC------------------------------------
Confidence 4689999999998775 7788999876 4566776654310
Q ss_pred ccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecCHHHHHHHHHhccCCC-----CCcceeeeCC
Q 004125 280 FLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTRN-----PTLWLTEWAS 354 (772)
Q Consensus 280 ~~g~~g~kvDaI~~~~~~i~~L~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~A~~~~q~~~~~~-----p~~~~v~~AP 354 (772)
.| .+. ..+.|||+|.+..+|..|.+.+.... ...+.+.++.
T Consensus 41 ----~~-----------------------------~~~-~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~ 86 (175)
T 3nmr_A 41 ----QN-----------------------------PPQ-SKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPAD 86 (175)
T ss_dssp ----SS-----------------------------SCE-EEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECG
T ss_pred ----CC-----------------------------CCC-cceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccc
Confidence 00 000 34899999999999999988665421 2333343332
Q ss_pred -------CCCCeeecccccchhHHHHHHHH
Q 004125 355 -------EPRDVYWQNLAIPYVSLSVRRLI 377 (772)
Q Consensus 355 -------eP~DIiW~NL~~~~~~r~~R~~~ 377 (772)
+..-|+=.||.....+..++.++
T Consensus 87 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F 116 (175)
T 3nmr_A 87 SEKNNAVEDRKLFIGMISKKCTENDIRVMF 116 (175)
T ss_dssp GGCCSCGGGSEEEEESCCTTCCHHHHHHHH
T ss_pred ccccccCCCCeEEEcCCCCcCCHHHHHHHH
Confidence 33457778888776666666643
No 56
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.71 E-value=0.15 Score=43.75 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=27.8
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP 356 (772)
+.|||+|++..+|..|.+.+... +...+.+++|-.+
T Consensus 52 g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 52 GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 79999999999999998876543 3456777777443
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=94.68 E-value=0.15 Score=46.38 Aligned_cols=37 Identities=11% Similarity=-0.009 Sum_probs=27.8
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
...+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 44 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~ 80 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVY 80 (129)
T ss_dssp CCSSCBCEETCTTSCCH---HHHHHHHTTT--SCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEe
Confidence 45689999999998765 7788999876 4566665543
No 58
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.65 E-value=0.13 Score=43.95 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=28.4
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEec
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~ 241 (772)
...+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|
T Consensus 3 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 40 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTE---ETLKGVFSKV--GAIKSCTISKK 40 (98)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 35679999999998765 7788899876 45666666543
No 59
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.63 E-value=0.15 Score=43.66 Aligned_cols=33 Identities=15% Similarity=0.039 Sum_probs=25.4
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
+.|||+|.+..+|+.|.+.+... +...+.|+.|
T Consensus 53 g~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 53 LKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 67999999999999998876543 3445667766
No 60
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=94.62 E-value=0.15 Score=44.42 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=28.7
Q ss_pred CCCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 197 RRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 197 ~~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
.....++|.|.|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 63 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVHY 63 (107)
T ss_dssp CCCCSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 3456789999999998765 7788888876 4566665543
No 61
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=94.62 E-value=0.11 Score=47.47 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=25.5
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEE
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQ 237 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~ 237 (772)
+..+||.|.|||.+.++ +.|+++|+++ |.+.++.
T Consensus 61 ~~~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~ 94 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQ 94 (140)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEE
T ss_pred CCCcEEEEEeCCCCCCH---HHHHHHHHhc--CCEEEEE
Confidence 45689999999998765 7788888876 4454444
No 62
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.55 E-value=0.15 Score=43.01 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=24.2
Q ss_pred eEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 322 AAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 322 ~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.|||+|++..+|..|.+.+... +...+.++.|
T Consensus 46 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 46 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 8999999999999998765432 3345666666
No 63
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.51 E-value=0.11 Score=45.80 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=25.8
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.|.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 69 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 69 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 389999999999999998876543 3445566665
No 64
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=94.50 E-value=0.15 Score=44.96 Aligned_cols=36 Identities=8% Similarity=0.106 Sum_probs=27.5
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
.|.|||+|.+..+|..|.+.+... +...+.++.|-.
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 47 RGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 378999999999999999876553 345567777643
No 65
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.49 E-value=0.065 Score=45.90 Aligned_cols=38 Identities=24% Similarity=0.177 Sum_probs=29.3
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPR 357 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~ 357 (772)
.+.|||+|.+..+|+.|.+.+... +...+.++.|-.|.
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 489999999999999999876643 34567777776553
No 66
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=94.43 E-value=0.16 Score=46.25 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=33.3
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCCCCeeec
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQ 362 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~DIiW~ 362 (772)
.|.|||+|.+..+|..|.+.+... ....+.|++|-.+.|...+
T Consensus 72 rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 72 SGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp CCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 489999999999999999877654 3456778888777766554
No 67
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.40 E-value=0.24 Score=43.18 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=25.5
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.+.|||+|++..+|..|.+.+... +...+.|++|
T Consensus 61 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 61 PPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 379999999999999999776543 3344566665
No 68
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.37 E-value=0.21 Score=41.33 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=22.3
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhcc
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~ 228 (772)
.+..+||.|.|||.+.++ +.|+++|++.
T Consensus 9 ~~~~~~l~V~~l~~~~t~---~~l~~~f~~~ 36 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITE---TDLRNHFYQF 36 (85)
T ss_dssp CSSCCCEEEECCTTTSCH---HHHHHHHHTT
T ss_pred CCCccEEEEcCCCCCCCH---HHHHHHHHhC
Confidence 456689999999998764 7788888766
No 69
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=94.35 E-value=0.085 Score=45.65 Aligned_cols=34 Identities=12% Similarity=-0.068 Sum_probs=26.0
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CC-CcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NP-TLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p-~~~~v~~A 353 (772)
.|.|||+|.+..+|+.|.+.+... .. ..+.|..|
T Consensus 54 kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 54 KGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 489999999999999999876643 22 45666665
No 70
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.34 E-value=0.1 Score=45.09 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=27.5
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
.+.|||+|.+..+|..|.+.+... +...+.++.|-.
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 50 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp EEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 379999999999999999876543 345567777644
No 71
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.32 E-value=0.18 Score=44.16 Aligned_cols=34 Identities=6% Similarity=0.036 Sum_probs=25.4
Q ss_pred CeEEEEecCHHHHHHHHHhccCCC--C-----CcceeeeCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTRN--P-----TLWLTEWAS 354 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~~--p-----~~~~v~~AP 354 (772)
+.|||+|.+..+|+.|.+.+.... . ..+.|+.|-
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 689999999999999998765421 1 456677663
No 72
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=94.27 E-value=0.22 Score=44.68 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=26.4
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
.+.|||+|.+..+|..|.+.+... +...+.|+.|.
T Consensus 76 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 76 LGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 489999999999999998866542 34456666664
No 73
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.26 E-value=0.18 Score=44.04 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=29.2
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
....+||.|.|+|.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te---~~L~~~F~~~--G~v~~v~i~~ 45 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRR 45 (103)
T ss_dssp CSGGGCEEEECCCTTCCH---HHHHHHHHTS--SCEEEEEEEC
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHhhc--CCEEEEEEEE
Confidence 345689999999998765 7889999876 5566666653
No 74
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.23 E-value=0.17 Score=41.87 Aligned_cols=36 Identities=6% Similarity=0.201 Sum_probs=27.0
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEE
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~ 239 (772)
...+||.|.|||.+.++ +.|+++|+.. |.+.++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~ 38 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTD---QDLVKLCQPY--GKIVSTKAI 38 (85)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHTTSTTT--SCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEE
Confidence 34579999999998765 7789999876 456555554
No 75
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.16 E-value=0.15 Score=41.26 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=24.2
Q ss_pred CCeEEEEecCHHHHHHHHHhccC-CCCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQT-RNPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~-~~p~~~~v~~A 353 (772)
.|.|||+|.+..+|..|.+.... -+...+.++.|
T Consensus 42 ~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 42 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp SSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 48999999999999999886652 12334455544
No 76
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.14 E-value=0.25 Score=43.46 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=28.0
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
....+||.|.|||.+.++ +.|+++|+++ +.+.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~~ 49 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGW---KKLKEVFSMA--GVVVRADILE 49 (114)
T ss_dssp CCCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 345689999999998765 7788999876 4565555543
No 77
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=94.14 E-value=0.26 Score=48.75 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=67.0
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEecchhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCCccccc
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNANKLAKLVKKKKKLQNWLDYYQLKYSRNNSKRPMMKTG 279 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~~~~L~~L~~~r~~~~~~Le~~~~k~~r~~~~Rp~~r~g 279 (772)
...||.|.|||.+.++ +.|+++|++. |.+.++.+++|-. +
T Consensus 14 p~~tlfVgnLp~~~te---~~L~~~F~~~--G~I~~v~i~~d~~-------------------------------t---- 53 (213)
T 4f02_A 14 PMASLYVGDLHPDVTE---AMLYEKFSPA--GPILSIRVCRDMI-------------------------------T---- 53 (213)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECTT-------------------------------T----
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEecccC-------------------------------C----
Confidence 3479999999998875 7889999887 5677777665310 0
Q ss_pred ccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC---
Q 004125 280 FLGLWGEKVDGIDYHISEIEKLSKEIAEERERVVSDPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS--- 354 (772)
Q Consensus 280 ~~g~~g~kvDaI~~~~~~i~~L~~~I~~~r~~~~~~~~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP--- 354 (772)
.. ..|.|||+|.+..+|..|.+..... ....+.+..+.
T Consensus 54 ----------------------------------g~---~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 54 ----------------------------------RR---SLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp ----------------------------------CC---EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred ----------------------------------CC---ccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence 00 2489999999999999998876543 12233444443
Q ss_pred -----CCCCeeecccccchhHHHHHHH
Q 004125 355 -----EPRDVYWQNLAIPYVSLSVRRL 376 (772)
Q Consensus 355 -----eP~DIiW~NL~~~~~~r~~R~~ 376 (772)
...-|+=.||.....+..++.+
T Consensus 97 ~~~~~~~~~l~v~nl~~~~t~~~l~~~ 123 (213)
T 4f02_A 97 SLRKSGVGNIFIKNLDKSIDNKALYDT 123 (213)
T ss_dssp HHHHHCTTEEEEESCCTTCCHHHHHHH
T ss_pred cccccccccceECCcccccHHHHHHHH
Confidence 2334777788776666665554
No 78
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.10 E-value=0.2 Score=43.97 Aligned_cols=35 Identities=14% Similarity=-0.018 Sum_probs=26.1
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
..+.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 64 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (113)
T 2cpe_A 64 PKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 100 (113)
T ss_dssp BCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred eeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence 3589999999999999999876543 3344566665
No 79
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=94.09 E-value=0.1 Score=44.11 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=24.3
Q ss_pred CCCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEE
Q 004125 197 RRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTH 236 (772)
Q Consensus 197 ~~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v 236 (772)
..++.+||.|.|+|.+.++ +.|+++|+++ |.+.++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te---~~L~~~F~~~--G~i~~v 41 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTA---EELQQFFCQY--GEVVDV 41 (89)
T ss_dssp ----CCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEE
Confidence 3456789999999998875 7889999876 444433
No 80
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.08 E-value=0.33 Score=42.63 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=27.7
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
.+..||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 23 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~ 59 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDE---QELENMLKPF--GQVISTRILR 59 (114)
T ss_dssp CCTTEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEE
Confidence 45689999999998765 7789999876 4566655543
No 81
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.03 E-value=0.069 Score=44.80 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=21.3
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhcc
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~ 228 (772)
..+||.|.|||.+.++ +.|+++|+++
T Consensus 4 ~~~~l~V~nLp~~~te---~~l~~~F~~~ 29 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTE---DELREFFSQY 29 (88)
T ss_dssp CCCEEEEESCCSSSCH---HHHHHHSTTT
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHHc
Confidence 4579999999998765 7788888766
No 82
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=94.03 E-value=0.18 Score=44.26 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=27.3
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP 356 (772)
+.|||+|.+..+|+.|.+.+... +...+.+++|-+|
T Consensus 63 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 63 GYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 79999999999999999776543 3455677777433
No 83
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.95 E-value=0.27 Score=42.93 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=26.2
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
+.|||+|.+..+|..|.+.+... +...+.+++|-.
T Consensus 62 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 62 GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 79999999999999999876543 334566666643
No 84
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.94 E-value=0.16 Score=44.69 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=26.2
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.+.|||+|.+..+|+.|.+.+... +...+.|+.|
T Consensus 63 ~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a 98 (111)
T 2cpi_A 63 SASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLG 98 (111)
T ss_dssp CEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESC
T ss_pred CeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 489999999999999999876543 3345666665
No 85
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=93.88 E-value=0.086 Score=44.31 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=25.2
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP 356 (772)
.|.|||+|.+.. |+.|.+.+... +...+.++.|..+
T Consensus 43 ~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 43 KGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp CEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred ceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 489999999999 98888876543 3455667776443
No 86
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.3 Score=45.42 Aligned_cols=57 Identities=18% Similarity=0.318 Sum_probs=35.5
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC--------CCCCeeecccccchhHHHHHHH
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS--------EPRDVYWQNLAIPYVSLSVRRL 376 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP--------eP~DIiW~NL~~~~~~r~~R~~ 376 (772)
.|.|||+|.+..+|..|.+.+... ....+.+++|. +...++=.||.....+..++.+
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 107 (166)
T 3md3_A 41 VNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNA 107 (166)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHH
Confidence 379999999999999999766543 22334444442 2223556677665555544443
No 87
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.82 E-value=0.23 Score=42.66 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=27.2
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
.+.|||+|.+..+|..|.+.+... +...+.|+.|-.
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 54 KGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 479999999999999998876543 334566777643
No 88
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=93.80 E-value=0.27 Score=42.81 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=25.5
Q ss_pred CCCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEE
Q 004125 197 RRPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTH 236 (772)
Q Consensus 197 ~~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v 236 (772)
..+.+++|.|+|+|.+.++ +.|++.|+.+ |.+.++
T Consensus 17 ~~~ps~~l~V~NLp~~~te---~~L~~lF~~f--G~V~~v 51 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVE---ADLVEALQEF--GPISYV 51 (100)
T ss_dssp CCCCCSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEE
T ss_pred cCCCCcEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEE
Confidence 4456789999999997765 6788888766 444443
No 89
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.78 E-value=0.14 Score=45.25 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=27.3
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
+.|||+|.+..+|..|.+.+... +...+.+++|+.
T Consensus 47 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 47 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 57999999999999999877654 345567777754
No 90
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=93.73 E-value=0.21 Score=43.01 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=24.3
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEE
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i 238 (772)
....+||.|.|||.+.++ +.|+++|++. | +.++.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G-i~~v~i 50 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRL 50 (100)
T ss_dssp ----CEEEESCCSSCCSS---SHHHHHSCSS--C-EEEEEC
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhc--C-CeEEEE
Confidence 346689999999998765 6788888776 4 655554
No 91
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.72 E-value=0.39 Score=40.88 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=26.4
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--C--CCcceeeeCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--N--PTLWLTEWAS 354 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~--p~~~~v~~AP 354 (772)
+.|||+|.+..+|+.|.+.+... + ...+.+++|-
T Consensus 54 g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 54 SFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 68999999999999998876543 3 4567777763
No 92
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=93.70 E-value=0.45 Score=46.51 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=36.9
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC-----------------CCCCeeecccccchhHHHHHHH
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS-----------------EPRDVYWQNLAIPYVSLSVRRL 376 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP-----------------eP~DIiW~NL~~~~~~r~~R~~ 376 (772)
.+.|||+|.+..+|..|.+.+... ....+.+..+. ...-|+-.||.....+..++.+
T Consensus 70 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~ 145 (216)
T 2qfj_A 70 KGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSV 145 (216)
T ss_dssp CSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHH
Confidence 489999999999999999866543 22334444432 2245777777766555555544
No 93
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.64 E-value=0.35 Score=41.93 Aligned_cols=41 Identities=17% Similarity=0.027 Sum_probs=27.8
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCCCCeeec
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQ 362 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~DIiW~ 362 (772)
.|.|||+|.+..+|..|.+. ... ......+..| .+.++.|.
T Consensus 57 ~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~-~~~~~~~~ 99 (104)
T 1wg5_A 57 TGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS-SRAEVRTS 99 (104)
T ss_dssp CSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE-CTTTSCCS
T ss_pred ceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC-CHHHHHHh
Confidence 48999999999999999887 332 2234455555 44555443
No 94
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.63 E-value=0.4 Score=41.87 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=25.1
Q ss_pred CeEEEEecCHHHHHHHHHhccC----CCCCcceeeeCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQT----RNPTLWLTEWAS 354 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~----~~p~~~~v~~AP 354 (772)
+.|||+|++..+|..|.+.+.. -+...+.++.|-
T Consensus 52 g~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 52 RQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 6899999999999999886532 234456666663
No 95
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=93.62 E-value=0.36 Score=46.40 Aligned_cols=38 Identities=8% Similarity=0.059 Sum_probs=29.0
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
..+.+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 10 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~ 47 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTD---ESLRSHFEQW--GTLTDCVVMR 47 (196)
T ss_dssp CGGGGEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEE
Confidence 346689999999998775 7888999877 5566666554
No 96
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=93.62 E-value=0.1 Score=44.35 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=24.5
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.+.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 489999999999999999866543 2334445544
No 97
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=93.58 E-value=0.2 Score=44.00 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=25.6
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEE
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~ 239 (772)
.+.+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.
T Consensus 23 ~~~~~lfV~nLp~~~te---~~L~~~F~~~--G~i~~v~i~ 58 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVM 58 (109)
T ss_dssp ---CCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHcc--CCeEEEEEE
Confidence 35689999999998765 7788999876 556555544
No 98
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=93.54 E-value=0.25 Score=42.67 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=25.5
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
+.|||+|.+..+|..|.+.+... +...+.|++|-.
T Consensus 46 ~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 46 DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 47999999999999998875542 334566666643
No 99
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.54 E-value=0.41 Score=44.43 Aligned_cols=36 Identities=22% Similarity=0.137 Sum_probs=27.5
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP 356 (772)
|.|||+|.+..+|..|.+.+... ....+.+++|-.+
T Consensus 111 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 111 GFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred cEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 79999999999999999876543 3455677776443
No 100
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=93.51 E-value=0.24 Score=46.73 Aligned_cols=39 Identities=8% Similarity=-0.058 Sum_probs=28.9
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEec
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~ 241 (772)
..++|.|.|||.+.++ +.|+++|+.+.+..+.++.+++|
T Consensus 54 ~~~~lfVgnLp~~~te---~~L~~~F~~~G~i~v~~v~i~~d 92 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTD---QQLIQVIRSIGVYDVVELKFAEN 92 (156)
T ss_dssp --CEEEEECCCTTCCH---HHHHHHHHHTTCCCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHHCCccEEEEEEEec
Confidence 4589999999998775 77888998874436777776654
No 101
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=93.44 E-value=0.14 Score=48.01 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=37.6
Q ss_pred CCeEEEEecCHHHHHHHHHhccCCCCCcceeeeCC------CCCCeeecccccchhHHHHHHHH
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTRNPTLWLTEWAS------EPRDVYWQNLAIPYVSLSVRRLI 377 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~~p~~~~v~~AP------eP~DIiW~NL~~~~~~r~~R~~~ 377 (772)
.|.|||+|.+..+|..|.+..+.-+...+.+..|. ...-|+=.||.....+..++.++
T Consensus 45 ~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F 108 (167)
T 2cjk_A 45 RGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFF 108 (167)
T ss_dssp CSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHH
T ss_pred cceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHH
Confidence 48999999999999999886332233334444442 23357777787666666566543
No 102
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.43 E-value=0.35 Score=41.01 Aligned_cols=36 Identities=8% Similarity=0.021 Sum_probs=27.2
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP 356 (772)
+.|||+|.+..+|..|.+.+... +...+.++.|.+.
T Consensus 55 ~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 55 AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 34999999999999998876543 3456778887654
No 103
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=93.38 E-value=0.18 Score=40.60 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=17.1
Q ss_pred CCeEEEEecCHHHHHHHHH
Q 004125 320 MPAAFVSFNSRWGAAVCAQ 338 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q 338 (772)
.|.|||+|++..+|+.|.+
T Consensus 41 ~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 41 RGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp CBEEEEECSCHHHHHHHHS
T ss_pred CcEEEEEECCHHHHHHHHH
Confidence 4899999999999988876
No 104
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=93.36 E-value=0.24 Score=47.77 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=30.8
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCCCCeee
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYW 361 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~DIiW 361 (772)
.+.|||+|.+..+|..|.+.+... +...+.|++|..+....|
T Consensus 129 kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~~~~ 172 (177)
T 2f3j_A 129 LGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDLEH 172 (177)
T ss_dssp SCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGGGCC
T ss_pred eeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 489999999999999999876543 345677887765444333
No 105
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=93.33 E-value=0.12 Score=41.78 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=18.1
Q ss_pred CCeEEEEecCHHHHHHHHHh
Q 004125 320 MPAAFVSFNSRWGAAVCAQT 339 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~ 339 (772)
.|.|||+|.+..+|..|.+.
T Consensus 41 ~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 41 RGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CCCEEEECSSSHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHh
Confidence 58999999999999999875
No 106
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=93.31 E-value=0.28 Score=41.76 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=25.8
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
+.|||+|.+..+|..|.+.+... ....+.|+.|.
T Consensus 46 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 46 AFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp TEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 79999999999999999876543 23456666653
No 107
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=93.29 E-value=0.34 Score=42.45 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=25.3
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
|.|||+|.+..+|..|.+.+... +...+.|+.|
T Consensus 66 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 66 GFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 79999999999999998876543 3345566665
No 108
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.28 E-value=0.41 Score=41.61 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=26.0
Q ss_pred CCeEEEEecCHHHHHHHHHhcc--CC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQ--TR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~--~~--~p~~~~v~~A 353 (772)
.+.|||+|.+..+|..|.+.+. .. ....+.+++|
T Consensus 52 ~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a 89 (109)
T 2dis_A 52 RGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 89 (109)
T ss_dssp CCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred CcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence 4899999999999999998764 22 3445677766
No 109
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=93.27 E-value=0.3 Score=44.65 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=27.3
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
..+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 41 ~~~~l~V~nLp~~~~~---~~l~~~F~~~--G~i~~v~i~~ 76 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDE---VQLRQLFERY--GPIESVKIVC 76 (139)
T ss_dssp TTSEEEEESCSTTCCH---HHHHHHHHHH--SCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEE
Confidence 4589999999998765 6788888776 5566666554
No 110
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=93.25 E-value=0.44 Score=48.66 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=44.1
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCCCCeeecccccchhHHHHHHH
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQNLAIPYVSLSVRRL 376 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~DIiW~NL~~~~~~r~~R~~ 376 (772)
|.|||+|.+..+|..|.+.+... ....+.+.+|....-|+=.||.....+..++.+
T Consensus 59 g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~ 116 (261)
T 3sde_A 59 GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQA 116 (261)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHH
T ss_pred cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHH
Confidence 79999999999999998866543 345677888888888999999877666655554
No 111
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=93.25 E-value=0.2 Score=45.98 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=26.0
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.+.|||+|.+..+|..|.+.+... +...+.|++|
T Consensus 89 ~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 89 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp CSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 489999999999999999876543 3345666665
No 112
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=93.15 E-value=0.25 Score=41.91 Aligned_cols=39 Identities=21% Similarity=0.171 Sum_probs=29.7
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCCCCe
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDV 359 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~DI 359 (772)
|.|||+|.+..+|..|.+.+... +...+.++.|-.+.+.
T Consensus 52 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 52 GQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred cEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 78999999999999999876553 3455677777655543
No 113
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=93.04 E-value=0.36 Score=45.72 Aligned_cols=38 Identities=8% Similarity=0.190 Sum_probs=28.2
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
....+||.|.|||.+.++ +.|+++|..+ |.+.++.+..
T Consensus 69 ~~~~~~l~V~nLp~~~t~---~~L~~~F~~~--G~i~~v~i~~ 106 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNL 106 (165)
T ss_dssp CC-CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHhhcC--CCEEEEEEEe
Confidence 345689999999998764 7788999877 5566666554
No 114
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.04 E-value=0.35 Score=42.95 Aligned_cols=40 Identities=10% Similarity=0.085 Sum_probs=29.6
Q ss_pred CeEEEEecCHHHHHHHHHhccC----CCCCcceeeeCCCCCCee
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQT----RNPTLWLTEWASEPRDVY 360 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~----~~p~~~~v~~APeP~DIi 360 (772)
+.|||+|.+..+|..|.+.+.. -+...+.|+.|-...++.
T Consensus 63 g~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 63 SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp TEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 7899999999999999886542 244567777776555544
No 115
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.00 E-value=0.37 Score=45.07 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=26.0
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.|.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 112 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 112 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 489999999999999999876543 3345666665
No 116
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=92.99 E-value=0.34 Score=43.30 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=27.1
Q ss_pred cceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
.+||.|.|||.+.++ +.|+++|+++ |.+.++.+.+
T Consensus 36 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 70 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTA---QDLEAHFSSC--GSINRITILC 70 (124)
T ss_dssp HTEEEEEEECTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEe
Confidence 479999999998765 7788899876 5666666654
No 117
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=92.92 E-value=0.31 Score=43.22 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=19.5
Q ss_pred CeEEEEecCHHHHHHHHHhccC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQT 342 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~ 342 (772)
+.|||+|.+..+|+.|.+.+..
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g 73 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDN 73 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEEEEECCHHHHHHHHHHhCC
Confidence 6899999999999999987654
No 118
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.83 E-value=0.37 Score=42.55 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=25.5
Q ss_pred cceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEE
Q 004125 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (772)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~ 239 (772)
.+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.
T Consensus 27 ~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~ 60 (116)
T 1x4b_A 27 FRKLFIGGLSFETTE---ESLRNYYEQW--GKLTDCVVM 60 (116)
T ss_dssp HTEEEEECCTTCCCH---HHHHHHHTSS--CCCSEEEEE
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEE
Confidence 479999999998765 7788899776 445555544
No 119
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.79 E-value=0.36 Score=42.09 Aligned_cols=36 Identities=11% Similarity=0.004 Sum_probs=26.3
Q ss_pred CeEEEEecCHHHHHHHHHhccCC----CCCcceeeeCCCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR----NPTLWLTEWASEP 356 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~----~p~~~~v~~APeP 356 (772)
+.|||+|.+..+|..|.+.+... +...+.|+.|-..
T Consensus 53 g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 53 NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 46999999999999998876532 3445667776543
No 120
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.79 E-value=0.22 Score=44.11 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=22.8
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhcc
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~ 228 (772)
....+||.|.|||.+.++ +.|+++|+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 39 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITK---MDVLQFLEGI 39 (114)
T ss_dssp CSCCCEEEEESCCTTSCH---HHHHHHTTTS
T ss_pred CCCccEEEEeCcCCcCCH---HHHHHHHHhC
Confidence 345689999999998765 7789999766
No 121
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.76 E-value=0.2 Score=44.39 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccC
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNH 229 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~ 229 (772)
...+||.|.|||.+.++ +.|+++|+++.
T Consensus 6 ~~~~~lfVgnLp~~~te---~~L~~~F~~~G 33 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDE---DEITASFRRFG 33 (114)
T ss_dssp SCCCCEEEECCCTTCCH---HHHHHHTTTTC
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHhcC
Confidence 34689999999998765 78899998763
No 122
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=92.73 E-value=0.32 Score=42.39 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhcc
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~ 228 (772)
..+.++|.|.|+|.+.++ +.|+++|+..
T Consensus 8 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~ 35 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTM---EDVLNFFSDC 35 (107)
T ss_dssp CSSCCEEEEECCCSSCCS---HHHHHHTTTS
T ss_pred CCCccEEEEeCCCCCCCH---HHHHHHHHhc
Confidence 346789999999998776 7788898765
No 123
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=92.62 E-value=0.64 Score=46.40 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=25.5
Q ss_pred CCCcceEEEecCCC-CCCcchHHHHHHhhhccCCCceeEEE
Q 004125 198 RPDQFTVLVRNVPP-DPDESVSELVEHFFLVNHPNHYLTHQ 237 (772)
Q Consensus 198 ~~~~~TVlV~~IP~-~~~~~~~e~l~~~F~~~~p~~v~~v~ 237 (772)
.+...||.|.|||. +.++ +.|+++|+.+ |.+.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te---~~L~~~F~~~--G~i~~v~ 66 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVK 66 (229)
T ss_dssp CCCCSEEEEESCCTTTCCH---HHHHHHHHHH--TCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCH---HHHHHHHHhC--CCeEEEE
Confidence 35678999999999 7765 7788888766 3444443
No 124
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.42 Score=40.94 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=23.6
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
+.|||+|.+..+|..|...+... +...+.+++|
T Consensus 64 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 64 GCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 79999999999999998776543 2333444444
No 125
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=92.53 E-value=0.41 Score=41.00 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=24.4
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
+.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 38 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 38 GFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 79999999999999998865432 3334566655
No 126
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=92.50 E-value=0.74 Score=39.30 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=25.4
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
|.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 58 AFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 78999999999999999876543 3445566665
No 127
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=92.37 E-value=0.67 Score=47.65 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=45.4
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCCCCeeecccccchhHHHHHHHH
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQNLAIPYVSLSVRRLI 377 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~DIiW~NL~~~~~~r~~R~~~ 377 (772)
.|.|||+|.+..+|..|.+.+... +...+.++++|...-|+=.||.....+..++.++
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f 116 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELV 116 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHH
Confidence 379999999999999998776543 3456778889888889999998777666666543
No 128
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=92.26 E-value=0.25 Score=44.90 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=22.0
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhcc
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~ 228 (772)
....||.|.|||.+.++ +.|+++|+++
T Consensus 21 ~~~~~lfV~nL~~~~te---~~L~~~F~~~ 47 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTM---DSILGALAPY 47 (131)
T ss_dssp CCCCEEEECSCCTTCCS---HHHHHHHGGG
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHh
Confidence 34579999999998776 7788888766
No 129
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=92.16 E-value=0.58 Score=43.36 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=27.8
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
....++|.|+|+|.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~ 121 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMW 121 (166)
T ss_dssp CTTCEEEEEESCCTTCCH---HHHHHHHTTS--TTEEEEEEEE
T ss_pred CCCCceEEECCCCCCCCH---HHHHHHHhcc--CCeeEEEEEe
Confidence 345689999999998764 7788888766 4555555543
No 130
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.11 E-value=0.28 Score=43.32 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=25.4
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEE
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~ 239 (772)
+.++|.|+|+|.+.++ +.|+++|+.+ .+.++.++
T Consensus 15 ~~~~v~V~nLp~~~te---~dl~~~F~~~---~v~~v~i~ 48 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAME---NDVRDFFHGL---RVDAVHLL 48 (109)
T ss_dssp HHHEEEEECCCSSCCH---HHHHHHTTTS---CCCEEEEC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHhccC---CeeEEEEE
Confidence 4589999999998775 7899999766 24455544
No 131
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=92.03 E-value=0.83 Score=39.56 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=27.8
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCC-cceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPT-LWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~-~~~v~~APe 355 (772)
.|.|||+|.+..+|+.|.+.+... ... .+.|+.|-+
T Consensus 61 ~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 61 KGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp CCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 489999999999999999876543 333 577777754
No 132
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=91.92 E-value=1.1 Score=44.14 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=24.2
Q ss_pred CCcceEEEecCC-CCCCcchHHHHHHhhhccCCCceeEEE
Q 004125 199 PDQFTVLVRNVP-PDPDESVSELVEHFFLVNHPNHYLTHQ 237 (772)
Q Consensus 199 ~~~~TVlV~~IP-~~~~~~~~e~l~~~F~~~~p~~v~~v~ 237 (772)
++..||.|.|+| .+.++ +.|++.|+.+ |.|.++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~---~~L~~~F~~~--G~v~~v~ 36 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNC---DRVFNVFCLY--GNVEKVK 36 (205)
T ss_dssp CCCSEEEEECCCTTTCCH---HHHHHHHTTT--SCEEEEE
T ss_pred CCCCEEEEeCCCcccCCH---HHHHHHHHhc--CCeEEEE
Confidence 345799999999 56664 6788888766 4555443
No 133
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=91.89 E-value=0.66 Score=43.19 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=27.1
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
....+|.|+|+|.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 87 ~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~ 123 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITD---DQLDTIFGKY--GSIVQKNILR 123 (168)
T ss_dssp TTTCEEEEESCCTTCCH---HHHHHHHTSS--SCEEEEEEEE
T ss_pred CCCCCEEEeCCCCCCCH---HHHHHhhhcC--CcEEEEEEEE
Confidence 45689999999997764 7788888776 4555555543
No 134
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=91.64 E-value=0.7 Score=45.08 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=27.5
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
..++|.|+|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 124 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~ 159 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSD---DDIKSVFEAF--GKIKSATLAR 159 (216)
T ss_dssp TSCEEEEECCCTTCCH---HHHHHHHTTS--SCEEEEEEEE
T ss_pred CCcEEEEeCCCCcCCH---HHHHHHHhcc--CCeeEEEEEe
Confidence 4579999999998764 7888899876 5666666654
No 135
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=91.24 E-value=1.1 Score=39.11 Aligned_cols=36 Identities=11% Similarity=0.016 Sum_probs=28.6
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
.|.|||+|.+..+|..|.+.+..+ ....+.++.|++
T Consensus 56 ~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 56 AVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred cEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 489999999999999999988764 345566777753
No 136
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=91.24 E-value=0.65 Score=44.85 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=20.9
Q ss_pred CcceEEEecCCC-CCCcchHHHHHHhhhcc
Q 004125 200 DQFTVLVRNVPP-DPDESVSELVEHFFLVN 228 (772)
Q Consensus 200 ~~~TVlV~~IP~-~~~~~~~e~l~~~F~~~ 228 (772)
++.||.|.|||. +.++ +.|+++|+.+
T Consensus 2 ~~~~l~v~nlp~~~~~~---~~l~~~F~~~ 28 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTP---QSLFILFGVY 28 (198)
T ss_dssp CCCEEEEECCCSSSCCH---HHHHHHHHTT
T ss_pred CCcEEEEeCCCcccCCH---HHHHHHHHhc
Confidence 457999999999 7765 7788888765
No 137
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=91.12 E-value=0.91 Score=42.47 Aligned_cols=36 Identities=6% Similarity=0.097 Sum_probs=26.9
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEE
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~ 239 (772)
...++|.|.|+|.+.++ +.|+++|+.+ |.+.++.+.
T Consensus 93 ~~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~~~ 128 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTE---NDIRVMFSSF--GQIEECRIL 128 (175)
T ss_dssp GGGSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCeEEEcCCCCcCCH---HHHHHHHHhC--CCEEEEEEE
Confidence 35689999999998765 7788888876 445555554
No 138
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.06 E-value=0.26 Score=42.33 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=35.1
Q ss_pred CeEEEEecCHHHHHHHHHhccCCC--CCcceeeeCCCCCCeee
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTRN--PTLWLTEWASEPRDVYW 361 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~~--p~~~~v~~APeP~DIiW 361 (772)
|.|||+|.++.+|+.|.+.++... ...+++..|+..+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 899999999999999998877653 45688999999999863
No 139
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=91.04 E-value=0.86 Score=42.23 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=26.3
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEE
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~ 239 (772)
....+|.|+|+|.+.++ +.|+++|+.. |.+.++.+.
T Consensus 86 ~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~ 121 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQ---KELEQLFSQY--GRIITSRIL 121 (167)
T ss_dssp GTTCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCcEEECCCCCcCCH---HHHHHHHHhc--CCEeEEEEE
Confidence 34579999999997764 7788888876 455555544
No 140
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=90.78 E-value=0.54 Score=42.65 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=22.7
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhcc
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~ 228 (772)
...++|.|.|||.+.++ +.|+++|+.+
T Consensus 40 ~~~~~lfVgnLp~~~te---~dL~~~F~~~ 66 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTK---EEIVQFFSGL 66 (126)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcC
Confidence 35689999999998775 7899999876
No 141
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.76 E-value=0.28 Score=44.01 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=24.2
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.|.|||+|.+..+|..|.+ +... ....+.|.+|
T Consensus 67 ~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 67 TGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp EEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4899999999999999998 4332 2344556655
No 142
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=90.74 E-value=0.58 Score=47.04 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=28.5
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEec
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~ 241 (772)
..+||.|.|||.+.++ +.|+++|+.+....+.++.+++|
T Consensus 67 ~~~~lfVgnL~~~~te---~~L~~~F~~~G~~~v~~v~i~~d 105 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFEN 105 (229)
T ss_dssp --CEEEEESCCTTCCH---HHHHHHHHTTTCCCEEEEEEEEC
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHHCCcceEEEEEEec
Confidence 4579999999998775 78889998773226777777654
No 143
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=90.14 E-value=0.85 Score=42.68 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=27.3
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
....+|.|.|+|.+.++ +.|+++|+.. |.+.++.+.+
T Consensus 92 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~ 128 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVK 128 (172)
T ss_dssp TTTTCEEEECCCTTCCH---HHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCEEEEEcCCCcCCH---HHHHHHHHhc--CCceEEEEEe
Confidence 34689999999997764 7788888876 4565555543
No 144
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=88.53 E-value=1.4 Score=42.11 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=27.4
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
...++|.|.|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 102 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 138 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEE---HHLRDYFEQY--GKIEVIEIMT 138 (196)
T ss_dssp -CCSEEEEECCTTTCCH---HHHHHHHTTT--SCEEEEEEEE
T ss_pred CCcceEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEee
Confidence 35589999999998765 7888999866 5566666554
No 145
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=88.49 E-value=1.1 Score=41.76 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=24.7
Q ss_pred CCeEEEEecCHHHHHHHHHhccC--CCCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQT--RNPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~--~~p~~~~v~~A 353 (772)
.|.|||+|.+..+|..|.+. .. -+...+.+++|
T Consensus 129 ~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 129 RGFGFVTYDSADAVDRVCQN-KFIDFKDRKIEIKRA 163 (167)
T ss_dssp SEEEEEEESSHHHHHHHHHC-SEECSSSSCEEEEEC
T ss_pred ceEEEEEECCHHHHHHHHhC-CCEEeCCeEEEEeec
Confidence 48999999999999999873 22 23455667776
No 146
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=88.18 E-value=2.2 Score=36.10 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=25.8
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
|.|||.|.++.+|..|.+.+... .....+++.|
T Consensus 44 GfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 44 GIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 89999999999999998877543 3345667666
No 147
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=88.09 E-value=1.3 Score=49.08 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=27.7
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
.|.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 144 kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 144 RGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred cceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 489999999999999999887654 334566777653
No 148
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=87.76 E-value=1.6 Score=42.78 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=26.6
Q ss_pred cceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
..+|.|.|+|.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 103 ~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~~~i~~ 137 (213)
T 4f02_A 103 VGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVC 137 (213)
T ss_dssp TTEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred cccceECCcccccHH---HHHHHHHhhc--CCeEEEEeec
Confidence 468999999998765 7788888876 5566666554
No 149
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=87.68 E-value=1.8 Score=44.55 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=39.7
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCCCCeeecccccchhHHHHHHHHH
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQNLAIPYVSLSVRRLIM 378 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~DIiW~NL~~~~~~r~~R~~~~ 378 (772)
.|.|||+|.+..+|..|.+ +... +...+.++++ ...-|+=.||.....+..++.++.
T Consensus 81 ~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~-~~~~l~v~nlp~~~t~~~l~~~f~ 139 (292)
T 2ghp_A 81 FRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL-TECTLWMTNFPPSYTQRNIRDLLQ 139 (292)
T ss_dssp SEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC-CSCEEEEECCCTTCCHHHHHHHHH
T ss_pred cEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC-CCCEEEEECCCCCCCHHHHHHHHH
Confidence 3899999999999999985 3222 2334556665 456688888887776666666543
No 150
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=87.34 E-value=1.9 Score=41.16 Aligned_cols=34 Identities=12% Similarity=-0.041 Sum_probs=26.2
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.+.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 479999999999999999876543 3445667666
No 151
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=86.86 E-value=4.3 Score=41.36 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=20.5
Q ss_pred CCcceEEEecCCCCCCc-chHHHHHHhhhcc
Q 004125 199 PDQFTVLVRNVPPDPDE-SVSELVEHFFLVN 228 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~-~~~e~l~~~F~~~ 228 (772)
...+||.|.|||.+.++ .+++.|.++|+.+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~ 37 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQF 37 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence 44679999999997654 3333355777655
No 152
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=86.79 E-value=0.57 Score=48.22 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.5
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEecc
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVNA 242 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~~ 242 (772)
.+...+|.|.|+|.+.++ +.|+++|+.. |.+.++.+.+|-
T Consensus 92 ~~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~~ 131 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQ---QQFEELVRPF--GSLERCFLVYSE 131 (284)
T ss_dssp CCCSCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred cCCCCEEEEcCCCCcCCH---HHHHHHHHhc--CCeeEEEEEeeC
Confidence 356689999999998765 7788899876 456777776653
No 153
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=85.88 E-value=1.9 Score=37.47 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=28.1
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
..|.|||+|.+..+|+.|.+.+..+ +.....++.+|
T Consensus 67 ~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 67 LVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred ccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 3689999999999999999887654 34455666666
No 154
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=84.30 E-value=2.9 Score=42.66 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=24.6
Q ss_pred CeEEEEecCHHHHHHHHHhccCCC---CCcceeeeC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTRN---PTLWLTEWA 353 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~~---p~~~~v~~A 353 (772)
+.|||.|.+..+|..|.+.+.... ...+.+++|
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 699999999999999998876542 334455544
No 155
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=83.41 E-value=1.6 Score=35.91 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=30.6
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEec
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~ 241 (772)
....+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+|
T Consensus 8 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 46 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSK---KDLKDYFTKF--GEVVDCTIKMD 46 (87)
T ss_dssp CSCTTEEEEECCCTTCCH---HHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEeec
Confidence 456789999999998765 7889999876 56777777654
No 156
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.22 E-value=3.6 Score=35.84 Aligned_cols=45 Identities=22% Similarity=0.039 Sum_probs=34.1
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCCCCeeecc
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPRDVYWQN 363 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~DIiW~N 363 (772)
..|.|||+|.+..+|..|.+.+... +...+.++.|.+..|.-+..
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 4689999999999999999887654 34567788886666655443
No 157
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=83.15 E-value=3 Score=39.96 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=25.6
Q ss_pred CeEEEEecCHHHHHHHHHhccCCC---CCcceeeeCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTRN---PTLWLTEWAS 354 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~~---p~~~~v~~AP 354 (772)
+.|||+|.+..+|..|.+.+.... ...+.+..|-
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 789999999999999998776542 3345555553
No 158
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=82.17 E-value=5.2 Score=39.57 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=25.9
Q ss_pred CeEEEEecCHHHHHHHHHhccCCC---CCcceeeeCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTRN---PTLWLTEWAS 354 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~~---p~~~~v~~AP 354 (772)
+.|||+|.+..+|..|.+.+.... ...+.+..|-
T Consensus 190 g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 190 KMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred cEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 689999999999999998776532 3456666653
No 159
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.94 E-value=1.8 Score=37.45 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=27.5
Q ss_pred CCeEEEEecCHHHHHHHHHhccCCCCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTRNPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~~p~~~~v~~AP 354 (772)
.|.|||+|.+..+|..|.+.........+.|++|-
T Consensus 54 rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 54 PGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp SSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 48999999999999999887555445556777763
No 160
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=81.45 E-value=4.4 Score=41.04 Aligned_cols=36 Identities=28% Similarity=0.281 Sum_probs=27.1
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
+..+|.|.|+|.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 95 ~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~ 130 (261)
T 3sde_A 95 HGAALTVKNLSPVVSN---ELLEQAFSQF--GPVEKAVVVV 130 (261)
T ss_dssp CSSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEE
T ss_pred cCCcccccCCCCCCCH---HHHHHHHHhc--CCeEEEEeee
Confidence 4579999999997764 7888899876 4566666554
No 161
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=78.32 E-value=1.3 Score=36.85 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=29.2
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEPR 357 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP~ 357 (772)
|.|||+|.+..+|..|.+.+... +...+.++.||...
T Consensus 41 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 41 RTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp TEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred cEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 79999999999999999876543 44567788887643
No 162
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=78.25 E-value=3.4 Score=36.57 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhhhc------CCCCCCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 298 IEKLSKEIAEERERVVS------DPKAIMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 298 i~~L~~~I~~~r~~~~~------~~~~~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
.+++++++.++=++... ......|.|||+|.+..+|..|.+.+..+ ....+.++.+|
T Consensus 27 ~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 27 DTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 34566666655444210 11113589999999999999999988764 34445566654
No 163
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=77.32 E-value=5.3 Score=34.57 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=27.8
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
..|.|||+|.+..+|..|.+.+..+ ......++.+|
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 3589999999999999999988764 33445566654
No 164
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.10 E-value=3.2 Score=34.46 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=28.7
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEec
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~ 241 (772)
....++|.|.|||.+.++ +.|+++|+.. .+.++.+.+|
T Consensus 7 ~~~~~~l~v~nLp~~~t~---~~l~~~F~~~---~i~~v~i~~~ 44 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTE---KNVMEFLAPL---KPVAIRIVRN 44 (91)
T ss_dssp CCCCCEEEEECCCSSCCH---HHHHHHHTTS---CCSEEEEEEC
T ss_pred CCCccEEEEECCCCCCCH---HHHHHHHhhC---CceEEEEEEC
Confidence 446789999999998765 7789999876 3556666653
No 165
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.47 E-value=2.5 Score=37.95 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=30.4
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCC--CceeEEEEEec
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHP--NHYLTHQVVVN 241 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p--~~v~~v~i~~~ 241 (772)
.+.++|.|+|||.+.++ +.|+++|+.+.+ +.+.++.+++|
T Consensus 21 ~~~~~v~V~nLp~~~te---~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATA---EEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp CSCCEEEECSCCTTCCH---HHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhhCCccCCcceEEEEEC
Confidence 45689999999998775 789999988755 34566777654
No 166
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=75.05 E-value=4.9 Score=41.21 Aligned_cols=34 Identities=15% Similarity=0.028 Sum_probs=24.8
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
..|.|||+|.+..+|..|. .+... ....+.+.+|
T Consensus 253 ~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 253 NNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLA 288 (292)
T ss_dssp CCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEEC
T ss_pred CceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEe
Confidence 3589999999999999998 65443 2344566665
No 167
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.06 E-value=3.4 Score=35.29 Aligned_cols=39 Identities=8% Similarity=0.128 Sum_probs=30.2
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEec
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~ 241 (772)
....+||.|.|||.+.++ +.|+++|+++ +.+.++.+.+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~ 51 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQ---ETLRSYFSQY--GEVVDCVIMKD 51 (105)
T ss_dssp SSSSSEECCBSCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeeC
Confidence 346689999999998765 7788999876 56777777654
No 168
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.47 E-value=4.6 Score=33.98 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=28.5
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP 356 (772)
.+.|||+|.+..+|+.|.+.+... +...+.|+.|-++
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 56 RRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 489999999999999999876543 3456777777443
No 169
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=72.30 E-value=3.6 Score=34.96 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=29.4
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEec
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~ 241 (772)
...+||.|.|||.+.++ +.|+++|+.. |.+.++.+.+|
T Consensus 7 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDE---TEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEEC
Confidence 45689999999998765 7788999877 56777776653
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=71.58 E-value=6.6 Score=38.33 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=20.8
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR 343 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~ 343 (772)
.+.|||.|.+..+|..|.+.+...
T Consensus 165 ~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 165 SSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp SEEEEEECSSHHHHHHHHHHHTTC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCC
Confidence 389999999999999999887653
No 171
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.99 E-value=4.1 Score=35.52 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=29.2
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
+...+|.|.|||.+.++ +.|+++|+.+ |.+.++.++.
T Consensus 14 ~~~~~LfV~nLp~~vte---~dL~~lF~~f--G~V~~v~i~~ 50 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLK 50 (105)
T ss_dssp CCCCEEEECSCCTTSCH---HHHHHHHHHH--CCEEEEEEET
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEc
Confidence 45689999999998765 6788888877 6677777764
No 172
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.40 E-value=5.7 Score=34.15 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=28.2
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEE
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVV 239 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~ 239 (772)
+...+|.|.|+|.+.++ +.|+++|+.+ |.+.++.+.
T Consensus 13 ~p~~~l~V~nLp~~~te---~~L~~~F~~f--G~v~~v~i~ 48 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTE---TEVIALGLPF--GKVTNILML 48 (101)
T ss_dssp SCCSEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEE
Confidence 45689999999997765 7788999877 667777654
No 173
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.68 E-value=5.3 Score=34.24 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=28.3
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEec
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~ 241 (772)
...++|.|.|||.+.++ +.|+++|+.+. ++++.+++|
T Consensus 13 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G---~~~v~i~~d 49 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATE---NDIYNFFSPLN---PMRVHIEIG 49 (102)
T ss_dssp SSSCEEEEESCCTTCCH---HHHHHSSCSCC---CSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHcC---ceEEEEEEC
Confidence 45689999999998775 78999998764 236777654
No 174
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.60 E-value=5 Score=35.80 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=29.6
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
.+...+|.|.|||.+.++ +.|+++|+.+ |.+.++.++.
T Consensus 28 ~~ps~~LfVgNLp~~vte---~dL~~lF~~f--G~V~~v~i~~ 65 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLK 65 (119)
T ss_dssp SSCCSEEEEESCCTTCCH---HHHHHHHTTT--SCCCEEEEEG
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEeC
Confidence 345689999999998765 7788999877 6677777664
No 175
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=68.59 E-value=4.7 Score=35.54 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=29.4
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCC-CceeEEEEEec
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHP-NHYLTHQVVVN 241 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p-~~v~~v~i~~~ 241 (772)
...+||.|.|||.+.++ +.|+++|+.+.+ +.+.++.+++|
T Consensus 15 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G~~~~v~~v~i~~~ 55 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSI---EDVQNFLSDCTIHDGVAGVHFIYT 55 (118)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHTTTSCBTTGGGGEEEEEC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcCCccCceeEEEEEC
Confidence 35689999999998775 789999987643 12566666654
No 176
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.98 E-value=3.7 Score=34.17 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=26.4
Q ss_pred CeEEEEecCHHHHHHHHHhccC-C--CCCcceeeeCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQT-R--NPTLWLTEWAS 354 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~-~--~p~~~~v~~AP 354 (772)
+.|||+|.+..+|..|.+.+.. . +...+.+++|-
T Consensus 45 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 45 GYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp TEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 7999999999999999987655 2 34556677663
No 177
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=67.87 E-value=7.7 Score=32.69 Aligned_cols=33 Identities=12% Similarity=-0.082 Sum_probs=25.4
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.+.|||+|.+..+|..|.+ +... ....+.++.|
T Consensus 58 ~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 58 RKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp TTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 5899999999999999998 5443 3445667666
No 178
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.53 E-value=4.9 Score=34.89 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=27.5
Q ss_pred cceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
.+||.|.|||.+.++ +.|+++|+.+ |.+.++.+.+
T Consensus 25 ~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~ 59 (114)
T 2cq4_A 25 ARTVFCMQLAARIRP---RDLEDFFSAV--GKVRDVRIIS 59 (114)
T ss_dssp HTEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEECC
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhC--CCEeEEEEEe
Confidence 479999999998765 7789999876 5677776654
No 179
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.53 E-value=5.3 Score=33.79 Aligned_cols=35 Identities=20% Similarity=0.071 Sum_probs=26.4
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
..+.|||+|.+..+|+.|.+.+... +...+.|++|
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3489999999999999999866542 3345666665
No 180
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.31 E-value=7.3 Score=33.71 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=26.5
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.+.|||+|.+..+|..|.+.+... ....+.++.|
T Consensus 67 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 67 RGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp CSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 489999999999999999876543 3445667666
No 181
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=67.18 E-value=4.9 Score=35.29 Aligned_cols=35 Identities=9% Similarity=-0.071 Sum_probs=26.8
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
.|.|||+|.+.++|..|.+.+... +...+.|+.|-
T Consensus 67 rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 67 DGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp SCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 489999999999999999876543 34456677764
No 182
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=67.06 E-value=3.9 Score=34.21 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=26.8
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
.|.|||+|.+..+|..|.+.+... +...+.++.|-
T Consensus 53 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 53 KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 489999999999999999866532 34456777763
No 183
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.68 E-value=5.1 Score=33.67 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=26.3
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP 354 (772)
.+.|||+|.+..+|..|.+.+... +...+.+++|-
T Consensus 49 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 49 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 479999999999999999776543 33456666663
No 184
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=62.46 E-value=6.3 Score=31.83 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=20.6
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR 343 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~ 343 (772)
.|.|||+|.+..+|+.|.+.+...
T Consensus 47 ~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 47 KGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CCEEEEEESSHHHHHHHHTTSSSC
T ss_pred eEEEEEEECCHHHHHHHHHHhcCc
Confidence 489999999999999998876543
No 185
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=61.09 E-value=7.6 Score=35.37 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=29.5
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCC-ceeEEEEEec
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPN-HYLTHQVVVN 241 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~-~v~~v~i~~~ 241 (772)
.+.++|.|.|+|.+.++ +.|+++|+...+. .+.++.+++|
T Consensus 42 ~~~~~lfVgnLp~~~te---~dL~~~F~~~G~v~~v~~v~i~~d 82 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSV---EDVQNFLSDCTIHDGAAGVHFIYT 82 (136)
T ss_dssp CTTCEEEEESCCTTCCH---HHHHHHTTTCCCSSSSTTEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcCceeEEEEEEC
Confidence 45689999999998775 7899999887431 1556666654
No 186
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=59.84 E-value=9.9 Score=33.66 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=27.0
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
.+.|||+|.+..+|..|.+.+... ....+.|+.|-.
T Consensus 73 kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 73 RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 489999999999999998776543 344566776643
No 187
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=56.95 E-value=11 Score=35.70 Aligned_cols=34 Identities=9% Similarity=0.080 Sum_probs=27.4
Q ss_pred CeEEEEecCHHHHHHHHHhccCCCC----CcceeeeCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTRNP----TLWLTEWAS 354 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~~p----~~~~v~~AP 354 (772)
+.|||+|.+..+|..|.+.+....- ..++|+.|=
T Consensus 85 gfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 85 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 6899999999999999998876532 457777763
No 188
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.86 E-value=9.3 Score=31.79 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=24.5
Q ss_pred eEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCCC
Q 004125 322 AAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASEP 356 (772)
Q Consensus 322 ~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APeP 356 (772)
.|||+|.+..+|..|.+ +... +...+.|++|.+.
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 89999999999999988 5433 2344556666543
No 189
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.47 E-value=7.5 Score=32.06 Aligned_cols=34 Identities=9% Similarity=-0.059 Sum_probs=25.1
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
..|.|||+|.+..+|+.|.+ +... +...+.+.+|
T Consensus 49 ~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 49 KTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp EEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 45799999999999999998 5432 3344566655
No 190
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.15 E-value=8 Score=33.22 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=25.3
Q ss_pred CCeEEEEecCHHHHHHHHHhccC----CCCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQT----RNPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~----~~p~~~~v~~AP 354 (772)
.+.|||+|.+..+|..|.+.+.. -+...+.|+.|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 38999999999999999876532 133455666664
No 191
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=55.51 E-value=9.7 Score=36.77 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=28.7
Q ss_pred cceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEec
Q 004125 201 QFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVVN 241 (772)
Q Consensus 201 ~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~ 241 (772)
.+||.|.|+|.+.++ +.|+++|+.+ |.+.++.+.++
T Consensus 109 ~~~l~V~nLp~~~t~---~~L~~~F~~~--G~v~~v~i~~~ 144 (193)
T 2voo_A 109 NRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRRT 144 (193)
T ss_dssp HTEEEEECCCTTCCH---HHHHHHHTTS--CCEEEEEEEEC
T ss_pred cCEEEecCCCCcCCH---HHHHHHHhcC--CCEEEEEEEEC
Confidence 479999999998764 7899999877 56777777653
No 192
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=55.11 E-value=6.9 Score=34.72 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=28.2
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
.|.|||+|.+..+|..|.+.+..+ ....+.++.+|+
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 379999999999999999998765 344566666654
No 193
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=54.31 E-value=14 Score=29.75 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=26.1
Q ss_pred ceEEEecCCCCCCcc---hHHHHHHhhhccCCCceeEEEEE
Q 004125 202 FTVLVRNVPPDPDES---VSELVEHFFLVNHPNHYLTHQVV 239 (772)
Q Consensus 202 ~TVlV~~IP~~~~~~---~~e~l~~~F~~~~p~~v~~v~i~ 239 (772)
.||.|.|||.+.++. ..+.|+++|+++ |.+.++.+.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~ 40 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP 40 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEec
Confidence 589999999876432 357789999877 456666554
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=54.12 E-value=8.9 Score=35.62 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=27.2
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
..|.|||+|.+..+|..|.+.+... +...+.++.|
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 4689999999999999999876543 3345667776
No 195
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=54.06 E-value=6.4 Score=36.08 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=26.8
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEEEe
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQVVV 240 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~ 240 (772)
...++|.|.|||.+.++ +.|+++|+.+. +.++.+++
T Consensus 44 ~~~~~lfV~nLp~~~te---~dL~~~F~~~G---i~~v~i~~ 79 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATE---NDIYNFFSPLN---PVRVHIEI 79 (139)
T ss_dssp -CCCCEECCSCCTTCCH---HHHHHHHCSCC---CSEEECCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcC---CeEEEEEE
Confidence 35689999999998775 78999998774 33565544
No 196
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=53.93 E-value=34 Score=29.68 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=21.6
Q ss_pred cccCCCCccccH------HHHHHHHHHHHHHHHHHHHhh
Q 004125 279 GFLGLWGEKVDG------IDYHISEIEKLSKEIAEERER 311 (772)
Q Consensus 279 g~~g~~g~kvDa------I~~~~~~i~~L~~~I~~~r~~ 311 (772)
+.|+.||..++. ++.+.+++++++.++...+.+
T Consensus 48 ~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~ 86 (112)
T 1l8d_A 48 GKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDR 86 (112)
T ss_dssp EECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888876553 666777777776666655543
No 197
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.13 E-value=24 Score=24.69 Aligned_cols=21 Identities=48% Similarity=0.525 Sum_probs=16.4
Q ss_pred cccHHHHHHHHHHHHHHHHHH
Q 004125 287 KVDGIDYHISEIEKLSKEIAE 307 (772)
Q Consensus 287 kvDaI~~~~~~i~~L~~~I~~ 307 (772)
|.|.|.|++++|..+.++|++
T Consensus 29 kkdliaylekeianlrkkiee 49 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 557899999998888887753
No 198
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.48 E-value=12 Score=32.56 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=25.3
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC----CCCcceeeeCC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR----NPTLWLTEWAS 354 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~----~p~~~~v~~AP 354 (772)
.|.|||+|.+..+|..|.+.+... +...+.|+.|-
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 389999999999999998865421 33455566653
No 199
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=52.38 E-value=6.8 Score=31.96 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=18.4
Q ss_pred CCCeEEEEecCHHHHHHHHHh
Q 004125 319 IMPAAFVSFNSRWGAAVCAQT 339 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~ 339 (772)
..|.|||+|.+..+|..|.+.
T Consensus 52 ~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 52 SRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp EEEEEEEEESSTHHHHHHHHS
T ss_pred cccEEEEEECCHHHHHHHHHh
Confidence 357999999999999999865
No 200
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.39 E-value=16 Score=31.71 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=26.5
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhc---cCCCceeEEE
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLV---NHPNHYLTHQ 237 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~---~~p~~v~~v~ 237 (772)
...+|.|+|+|++.++ +.|+-||++ ...|.+.+++
T Consensus 7 ~~~~I~V~~lPp~~~~---e~L~LYFEn~rrsGGG~V~~v~ 44 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPD---ELLTLYFENRRRSGGGPVLSWQ 44 (104)
T ss_dssp CCCEEEEESCCTTSCH---HHHHHHHHCTTTTCCCCEEEEE
T ss_pred CccEEEEECCCCCCCh---hHheEEEeCCCcCCCceeeEEE
Confidence 3469999999998765 789999987 3455666554
No 201
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.86 E-value=11 Score=33.66 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=25.2
Q ss_pred CeEEEEecCHHHHHHHHHhccC----CCCCcceeeeCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQT----RNPTLWLTEWAS 354 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~----~~p~~~~v~~AP 354 (772)
+.|||+|++..+|..|.+.+.. -....+.|+.|-
T Consensus 68 G~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 68 NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp TEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 8999999999999999876532 234456666663
No 202
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=50.04 E-value=29 Score=31.77 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=36.3
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCC------CCCCeeecccccchhHHHHHHHH
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWAS------EPRDVYWQNLAIPYVSLSVRRLI 377 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~AP------eP~DIiW~NL~~~~~~r~~R~~~ 377 (772)
|.|||+|.+..+|+.|. .+... +...+.++.+. .+.-|+=.||.....+..++.++
T Consensus 52 g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 115 (172)
T 2g4b_A 52 NFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELL 115 (172)
T ss_dssp TEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHH
Confidence 89999999999999998 33322 22334444432 23557777887766666666544
No 203
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.03 E-value=11 Score=33.31 Aligned_cols=23 Identities=13% Similarity=0.201 Sum_probs=20.5
Q ss_pred CeEEEEecCHHHHHHHHHhccCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR 343 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~ 343 (772)
+.|||+|.+..+|..|.+.+...
T Consensus 64 gfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 64 PYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999887654
No 204
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=49.95 E-value=13 Score=30.54 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=25.2
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEE
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i 238 (772)
+.+||.|.|+|.+.++ +.|+++|++. .+.++.+
T Consensus 4 ~~~~l~V~nLp~~~t~---~~l~~~F~~~---~v~~~~i 36 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNC---QEVHDLLKDY---DLKYCYV 36 (88)
T ss_dssp CCCCEEEESCCSSCCH---HHHHHHTCSS---CCCCEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhhC---CeEEEEE
Confidence 4579999999998775 7889999877 3444544
No 205
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.84 E-value=24 Score=29.09 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=25.4
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEE
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTH 236 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v 236 (772)
...++|.|.|||.+.++ +.|+++|+.+ |.+.++
T Consensus 6 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~v~~v 38 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDS---AQLSEYFLAF--GPVASV 38 (94)
T ss_dssp TTCCEEEEECCCTTCCH---HHHHHHGGGT--SCEEEE
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEE
Confidence 34579999999998775 7889999876 445554
No 206
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=49.58 E-value=22 Score=32.88 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=38.0
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC--------CCCeeecccccchhHHHHHHHH
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE--------PRDVYWQNLAIPYVSLSVRRLI 377 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe--------P~DIiW~NL~~~~~~r~~R~~~ 377 (772)
.|.|||+|.+..+|..|.+ +... ....+.+++|.. ..-|+=.||.....+..++.++
T Consensus 54 ~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F 120 (175)
T 1fje_B 54 RKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVF 120 (175)
T ss_dssp TTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHC
T ss_pred ccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHH
Confidence 4899999999999999986 3321 233455555532 2347777887666666666554
No 207
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=48.37 E-value=17 Score=29.36 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=20.7
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhcc
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~ 228 (772)
..+||.|.|||.+.++ +.|+++|++.
T Consensus 5 ~~~~l~V~nLp~~~t~---~~l~~~F~~~ 30 (87)
T 2hzc_A 5 SARRLYVGNIPFGITE---EAMMDFFNAQ 30 (87)
T ss_dssp GGGEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHH
Confidence 4689999999998765 6777787765
No 208
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=47.79 E-value=11 Score=34.15 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=25.7
Q ss_pred CCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
.|.|||+|.+..+|..|.+.+... ....+.|+.|
T Consensus 92 ~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 92 KGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred ccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 489999999999999999876543 2344566665
No 209
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=47.69 E-value=17 Score=36.54 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.0
Q ss_pred CeEEEEecCHHHHHHHHHhccCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR 343 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~ 343 (772)
|.|||+|.++.+|..|.+.+...
T Consensus 180 G~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 180 NCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCHHHHHHHHHHhCCC
Confidence 79999999999999998876543
No 210
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.58 E-value=13 Score=31.71 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=18.4
Q ss_pred CCCeEEEEecCHHHHHHHHHh
Q 004125 319 IMPAAFVSFNSRWGAAVCAQT 339 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~ 339 (772)
..+.|||+|.+..+|+.|.+.
T Consensus 54 ~~G~afV~F~~~~~a~~Al~~ 74 (102)
T 1wez_A 54 VTGEADVEFATHEDAVAAMAK 74 (102)
T ss_dssp EEEEEEEECSSSHHHHHHHTT
T ss_pred EeeEEEEEECCHHHHHHHHHh
Confidence 457999999999999999864
No 211
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=47.48 E-value=13 Score=30.00 Aligned_cols=21 Identities=19% Similarity=0.109 Sum_probs=18.3
Q ss_pred CCeEEEEecCHHHHHHHHHhcc
Q 004125 320 MPAAFVSFNSRWGAAVCAQTQQ 341 (772)
Q Consensus 320 ~~~AFVtF~s~~~A~~~~q~~~ 341 (772)
.+.|||+|.+..+|..|. .+.
T Consensus 53 kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp SSEEEEEESSHHHHHHHG-GGT
T ss_pred CcEEEEEcCCHHHHHHHH-hcC
Confidence 589999999999999998 544
No 212
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.06 E-value=20 Score=30.56 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=26.7
Q ss_pred CCCcceEEEecCCCCCCc-chHHHHHHhhhccCCCceeEE
Q 004125 198 RPDQFTVLVRNVPPDPDE-SVSELVEHFFLVNHPNHYLTH 236 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~-~~~e~l~~~F~~~~p~~v~~v 236 (772)
.|++-++.|.|+|-+.++ .+++.|++.|+++ .|.|.+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y-GG~Vl~V 44 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNC-GGKVLSI 44 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTT-TCCEEEC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHc-CCeeEEE
Confidence 344434889999997654 5677888999877 2356554
No 213
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.04 E-value=9.8 Score=32.28 Aligned_cols=34 Identities=9% Similarity=-0.030 Sum_probs=23.7
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
..+.|||+|.+..+|+.|.+. ... +...+.|+.|
T Consensus 57 ~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 57 SRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp EEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred cceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 347999999999999999876 321 2234455554
No 214
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.64 E-value=24 Score=31.50 Aligned_cols=37 Identities=22% Similarity=0.166 Sum_probs=28.6
Q ss_pred C-eEEEEecCHHHHHHHHHhccCCCC----CcceeeeCCCCC
Q 004125 321 P-AAFVSFNSRWGAAVCAQTQQTRNP----TLWLTEWASEPR 357 (772)
Q Consensus 321 ~-~AFVtF~s~~~A~~~~q~~~~~~p----~~~~v~~APeP~ 357 (772)
| .|||+|.+..+|..|.+.+....- ..++|+.|-.++
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5 599999999999999998876542 357788775443
No 215
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.63 E-value=13 Score=32.15 Aligned_cols=34 Identities=9% Similarity=-0.006 Sum_probs=23.3
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
..+.|||+|.+..+|..|. .+... +...+.|++|
T Consensus 66 ~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 66 SKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp CCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred cCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4589999999999999998 54332 2334445443
No 216
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=40.94 E-value=20 Score=32.43 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=27.4
Q ss_pred eEEEEecCHHHHHHHHHhccCCCC----CcceeeeCCCC
Q 004125 322 AAFVSFNSRWGAAVCAQTQQTRNP----TLWLTEWASEP 356 (772)
Q Consensus 322 ~AFVtF~s~~~A~~~~q~~~~~~p----~~~~v~~APeP 356 (772)
.|||+|.+..+|..|.+.+...+- ..++++.|-..
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 599999999999999998876532 45677777543
No 217
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.71 E-value=20 Score=29.96 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhcc
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~ 228 (772)
....++|.|.|||.+.++ +.|+++|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 39 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATE---ETLQEVFEKA 39 (101)
T ss_dssp SCCCSEEEEESCCTTCCH---HHHHHHCSSC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhC
Confidence 345689999999998765 7889999775
No 218
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=39.86 E-value=31 Score=32.44 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=19.8
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhcc
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~ 228 (772)
.++||.|.|||.+.++ +.|+++|+..
T Consensus 3 ~~~~l~V~nLp~~~te---~~l~~~F~~~ 28 (198)
T 2yh0_A 3 MARRLYVGNIPFGITE---EAMMDFFNAQ 28 (198)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHHHH
T ss_pred ceeEEEEcCCCCCCCH---HHHHHHHHHH
Confidence 4689999999998765 6677777654
No 219
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=45.14 E-value=6.4 Score=34.28 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=21.2
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhcc
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~ 228 (772)
...++|.|.|||.+.++ +.|+++|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 31 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTI---ESVADYFKQI 31 (116)
Confidence 45679999999997665 6778888766
No 220
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=38.28 E-value=20 Score=31.21 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=26.4
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCCCceeEEEE
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHPNHYLTHQV 238 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p~~v~~v~i 238 (772)
+..++|.|.|||.+.++ +.|+++|++..+ .+..+.+
T Consensus 26 ~~~~~l~VgnLp~~~te---~dL~~~F~~~G~-~v~~v~i 61 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSW---QDLKDLARENSL-ETTFSSV 61 (111)
T ss_dssp CCCEEEEEECSSCCCCH---HHHHHHHHHHTC-CCSEEEC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHHhCC-eeEEEEE
Confidence 45689999999998765 778889987742 4444444
No 221
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=37.80 E-value=17 Score=32.95 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=24.5
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
..|.|||+|++..+|..|.+ +... +.....|..|
T Consensus 87 srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 87 QSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp EEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred CCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 46899999999999999988 4322 2334555555
No 222
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.90 E-value=30 Score=28.71 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=23.1
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCC
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHP 230 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p 230 (772)
....||.|.|||.+.++ +.|+++|+++.+
T Consensus 17 ~~~~~l~V~nL~~~~t~---~~l~~~F~~~G~ 45 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARV---SDLKRALRELGS 45 (97)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCcCcH---HHHHHHHHhcCC
Confidence 34689999999998765 778888887743
No 223
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=42.71 E-value=7.4 Score=33.86 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=25.0
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
..+.|||+|.+..+|+.|.+.+... +...+.|+.|
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (116)
T 2lcw_A 56 LKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 92 (116)
Confidence 3589999999999999998765432 2334555555
No 224
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.75 E-value=25 Score=28.83 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=23.2
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhccCC
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVNHP 230 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~~p 230 (772)
....||.|.|||.+.++ +.|+++|+++.+
T Consensus 6 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~ 34 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTA---DDLRQLFGDRKL 34 (93)
T ss_dssp CCCCCEEEECCCTTCCH---HHHHHHHHHTTC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcCC
Confidence 45689999999998765 778888887743
No 225
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.91 E-value=18 Score=31.68 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=18.3
Q ss_pred CCCeEEEEecCHHHHHHHHH
Q 004125 319 IMPAAFVSFNSRWGAAVCAQ 338 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q 338 (772)
..|.|||+|.+..+|..|.+
T Consensus 60 ~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 60 QSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp EEEEEEEEBSSHHHHHHHGG
T ss_pred CCeEEEEEECCHHHHHHHHh
Confidence 46899999999999999988
No 226
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=34.81 E-value=37 Score=30.84 Aligned_cols=37 Identities=8% Similarity=0.177 Sum_probs=28.6
Q ss_pred ceEEEecC----CCCCCcchHHHHHHhhhccCCCceeEEEEEecch
Q 004125 202 FTVLVRNV----PPDPDESVSELVEHFFLVNHPNHYLTHQVVVNAN 243 (772)
Q Consensus 202 ~TVlV~~I----P~~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~~~ 243 (772)
-.|.|.|+ |...++ +.|+++|+.+ |.|.++.++.|-.
T Consensus 3 ~kI~VgnL~~~~~~~tte---~~Lk~~Fs~f--GeV~~~~li~Dp~ 43 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQD---ISIKNYFKKY--GEISHFEAFNDPN 43 (136)
T ss_dssp CEEEEEESSSSCCCCCCH---HHHHHHHHTT--SCCSEEEEEECTT
T ss_pred cEEEEeCCCCCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecCC
Confidence 37999999 887765 7899999977 5677777766543
No 227
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=34.23 E-value=26 Score=31.84 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=17.9
Q ss_pred CCCeEEEEecCHHHHHHHHH
Q 004125 319 IMPAAFVSFNSRWGAAVCAQ 338 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q 338 (772)
..+.|||+|.+..+|..|.+
T Consensus 85 srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 85 VTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp SSCCCEEECSHHHHHHHHTT
T ss_pred CceEEEEEeCCHHHHHHHHh
Confidence 46899999999999999984
No 228
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=34.19 E-value=35 Score=30.06 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=31.5
Q ss_pred CcceEEEecCCC--CCCcchHHHHHHhhhccCCCceeEEEEEecc
Q 004125 200 DQFTVLVRNVPP--DPDESVSELVEHFFLVNHPNHYLTHQVVVNA 242 (772)
Q Consensus 200 ~~~TVlV~~IP~--~~~~~~~e~l~~~F~~~~p~~v~~v~i~~~~ 242 (772)
..++|.++|+-. +.++.+.+.|++.|+++ |.|.++.+..|.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~ 61 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEK 61 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecC
Confidence 457999999954 44456788899999877 678888888764
No 229
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=32.14 E-value=33 Score=28.23 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=22.6
Q ss_pred CCCcceEEEecCCCCCCcchHHHHHHhhhcc
Q 004125 198 RPDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (772)
Q Consensus 198 ~~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~ 228 (772)
....+||.|.|||.+.++ +.|+++|+..
T Consensus 13 ~~~~~~l~V~nL~~~~t~---~~l~~~F~~~ 40 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITE---DELKEVFEDA 40 (96)
T ss_dssp TTGGGEEEEESCCSSCCH---HHHHHHHCSE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhhC
Confidence 345689999999998765 7788888765
No 230
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.87 E-value=39 Score=28.50 Aligned_cols=32 Identities=9% Similarity=-0.044 Sum_probs=22.2
Q ss_pred CeEEEEecCHHHHHHHHHhccCC--CCCcceeeeC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWA 353 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~A 353 (772)
+.+||||++.++|..|.+ +... .....+|+.|
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 348999999999998887 4332 2344556554
No 231
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=30.63 E-value=12 Score=31.60 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=18.0
Q ss_pred CCCeEEEEecCHHHHHHHHH
Q 004125 319 IMPAAFVSFNSRWGAAVCAQ 338 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q 338 (772)
..|.|||+|.+..+|+.|.+
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT
T ss_pred ccceEEEEECCHHHHHHHHh
Confidence 35899999999999999988
No 232
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.35 E-value=38 Score=28.94 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=21.4
Q ss_pred CCcceEEEecCCCCCCcchHHHHHHhhhcc
Q 004125 199 PDQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (772)
Q Consensus 199 ~~~~TVlV~~IP~~~~~~~~e~l~~~F~~~ 228 (772)
+...||.|.|||.+.++ +.|+++|+.+
T Consensus 23 ~~~~~l~V~nLp~~~t~---~~l~~~f~~~ 49 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTE---RDLVSLFARF 49 (115)
T ss_dssp SCCSEEEEECCCTTCCH---HHHHHHTHHH
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHh
Confidence 35589999999997765 6778888765
No 233
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.96 E-value=22 Score=31.67 Aligned_cols=21 Identities=24% Similarity=0.088 Sum_probs=18.8
Q ss_pred CCCeEEEEecCHHHHHHHHHh
Q 004125 319 IMPAAFVSFNSRWGAAVCAQT 339 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~ 339 (772)
..|.|||+|.+..+|..|.+.
T Consensus 67 ~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 67 PTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp EEEEEEECCSSHHHHHHHHTT
T ss_pred EeeEEEEEECCHHHHHHHHHh
Confidence 468999999999999999875
No 234
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=27.51 E-value=35 Score=28.42 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=20.3
Q ss_pred CcceEEEecCCCCCCcchHHHHHHhhhcc
Q 004125 200 DQFTVLVRNVPPDPDESVSELVEHFFLVN 228 (772)
Q Consensus 200 ~~~TVlV~~IP~~~~~~~~e~l~~~F~~~ 228 (772)
..+||.|.|||.+.++ +.|+++|+.+
T Consensus 16 ~~~~l~V~nLp~~~t~---~~l~~~F~~~ 41 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSV---AELKVAISEL 41 (101)
T ss_dssp CSEEEEEECCCTTSCH---HHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHh
Confidence 5689999999998765 6677777654
No 235
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=27.16 E-value=42 Score=32.60 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=29.2
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC--CCCcceeeeCCC
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR--NPTLWLTEWASE 355 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~--~p~~~~v~~APe 355 (772)
..|.+||.|.+..+|+.|.+.+..+ +.....++.+|+
T Consensus 174 ~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 174 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred ceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3478999999999999999998765 445566677664
No 236
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=27.12 E-value=81 Score=28.51 Aligned_cols=60 Identities=8% Similarity=-0.086 Sum_probs=38.7
Q ss_pred CCCeEEEEecCHHHHHHHHHhccCC------------CC---------CcceeeeCCCCCCeeecccccchhHHHHHHHH
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQQTR------------NP---------TLWLTEWASEPRDVYWQNLAIPYVSLSVRRLI 377 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~~~~------------~p---------~~~~v~~APeP~DIiW~NL~~~~~~r~~R~~~ 377 (772)
..|.|||.|.+..+|..|.+..... .+ ........+...-|+-.||...-.+..++.++
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F 91 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVF 91 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4699999999999999987653310 00 00111123345668889998877777777655
Q ss_pred H
Q 004125 378 M 378 (772)
Q Consensus 378 ~ 378 (772)
.
T Consensus 92 ~ 92 (158)
T 2kn4_A 92 E 92 (158)
T ss_dssp H
T ss_pred H
Confidence 4
No 237
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.92 E-value=1.2e+02 Score=26.18 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=31.1
Q ss_pred CeEEEEecCHHHHHHHHHh-ccCCCCCcceeeeCC--CCCCeeecccc
Q 004125 321 PAAFVSFNSRWGAAVCAQT-QQTRNPTLWLTEWAS--EPRDVYWQNLA 365 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~-~~~~~p~~~~v~~AP--eP~DIiW~NL~ 365 (772)
+.|.|||.+...|+.+.+. .+.-+.....+.+.| +|+-+.-++|.
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~~r~ll~gl~ 95 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGLP 95 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCCCCCCCCSCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCcceEeeecCC
Confidence 7899999999999888776 444455666676644 45555555554
No 238
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=23.14 E-value=41 Score=32.26 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.1
Q ss_pred CCCeEEEEecCHHHHHHHHHhc
Q 004125 319 IMPAAFVSFNSRWGAAVCAQTQ 340 (772)
Q Consensus 319 ~~~~AFVtF~s~~~A~~~~q~~ 340 (772)
..|.|||+|.+..+|..|.+..
T Consensus 149 ~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 149 FKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp EEEEEEEEESSHHHHHHHHHCT
T ss_pred cccEEEEEECCHHHHHHHHHhC
Confidence 4589999999999999998754
No 239
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=21.84 E-value=55 Score=34.67 Aligned_cols=23 Identities=13% Similarity=0.201 Sum_probs=20.5
Q ss_pred CeEEEEecCHHHHHHHHHhccCC
Q 004125 321 PAAFVSFNSRWGAAVCAQTQQTR 343 (772)
Q Consensus 321 ~~AFVtF~s~~~A~~~~q~~~~~ 343 (772)
|.|||+|++.++|+.|.+.+...
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999887653
No 240
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=20.20 E-value=49 Score=22.80 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=12.1
Q ss_pred hhhhhHHHHHHHHHHHH
Q 004125 584 ATVTPLLLPFIIVFFAL 600 (772)
Q Consensus 584 s~i~Plilpf~~~yF~l 600 (772)
+.+.|+++.++.+||.+
T Consensus 4 ~~~l~~v~~~~ifYFl~ 20 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMI 20 (37)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567787888877765
Done!