Query 004126
Match_columns 772
No_of_seqs 250 out of 982
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 18:00:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2203 GTP-binding protein [G 100.0 5E-186 1E-190 1507.9 63.6 704 1-720 39-748 (772)
2 PF05879 RHD3: Root hair defec 100.0 1E-170 2E-175 1498.5 70.9 702 5-725 1-721 (742)
3 COG1159 Era GTPase [General fu 100.0 3.8E-29 8.3E-34 263.5 14.0 163 1-179 8-173 (298)
4 cd01851 GBP Guanylate-binding 99.9 9E-28 1.9E-32 248.4 13.4 191 1-200 9-223 (224)
5 TIGR00436 era GTP-binding prot 99.8 7.2E-20 1.6E-24 194.0 15.7 164 1-180 2-166 (270)
6 PRK00089 era GTPase Era; Revie 99.8 9E-19 1.9E-23 187.0 15.2 163 1-178 7-171 (292)
7 PRK15494 era GTPase Era; Provi 99.7 3.9E-17 8.5E-22 179.0 14.7 162 1-179 54-217 (339)
8 COG1160 Predicted GTPases [Gen 99.7 1.4E-16 3E-21 176.8 13.8 160 2-178 6-165 (444)
9 PRK12298 obgE GTPase CgtA; Rev 99.7 5E-16 1.1E-20 173.3 15.3 168 2-179 162-334 (390)
10 KOG1423 Ras-like GTPase ERA [C 99.7 1E-15 2.3E-20 161.6 14.2 194 2-218 75-284 (379)
11 PF02263 GBP: Guanylate-bindin 99.6 8.9E-16 1.9E-20 162.6 10.4 189 1-201 23-254 (260)
12 PF02421 FeoB_N: Ferrous iron 99.6 6.8E-16 1.5E-20 151.7 8.7 148 2-172 3-155 (156)
13 cd04163 Era Era subfamily. Er 99.5 1.2E-13 2.5E-18 131.1 14.4 160 2-176 6-167 (168)
14 cd01894 EngA1 EngA1 subfamily. 99.5 3.5E-13 7.6E-18 127.9 13.2 155 3-176 1-156 (157)
15 PF01926 MMR_HSR1: 50S ribosom 99.5 1.4E-13 2.9E-18 127.0 9.7 115 2-131 2-116 (116)
16 COG0486 ThdF Predicted GTPase 99.5 5.5E-13 1.2E-17 148.8 15.3 225 2-263 220-451 (454)
17 PRK09866 hypothetical protein; 99.5 5E-11 1.1E-15 137.8 30.1 166 50-248 230-410 (741)
18 cd01898 Obg Obg subfamily. Th 99.4 7.6E-13 1.6E-17 128.2 12.5 164 2-176 3-169 (170)
19 PRK12296 obgE GTPase CgtA; Rev 99.4 7.5E-13 1.6E-17 151.2 14.4 170 2-179 162-341 (500)
20 COG1160 Predicted GTPases [Gen 99.4 4.7E-13 1E-17 149.0 11.2 161 2-175 181-348 (444)
21 TIGR03594 GTPase_EngA ribosome 99.4 9.1E-13 2E-17 148.0 13.5 160 2-180 2-162 (429)
22 COG1084 Predicted GTPase [Gene 99.4 1.6E-12 3.6E-17 139.3 14.1 154 2-169 171-327 (346)
23 cd01897 NOG NOG1 is a nucleola 99.4 2.3E-12 5.1E-17 124.7 13.6 163 2-177 3-167 (168)
24 PRK03003 GTP-binding protein D 99.4 1.6E-12 3.5E-17 148.6 13.9 160 2-179 41-200 (472)
25 PRK12299 obgE GTPase CgtA; Rev 99.4 2E-12 4.3E-17 141.9 14.0 164 2-178 161-328 (335)
26 PRK03003 GTP-binding protein D 99.4 1.6E-12 3.5E-17 148.6 12.5 164 2-178 214-382 (472)
27 TIGR02729 Obg_CgtA Obg family 99.4 3.1E-12 6.7E-17 140.1 14.1 165 2-177 160-328 (329)
28 PRK00093 GTP-binding protein D 99.4 3E-12 6.5E-17 144.3 14.1 162 2-176 176-342 (435)
29 PRK09518 bifunctional cytidyla 99.4 1.7E-12 3.7E-17 155.3 12.5 166 2-180 453-623 (712)
30 cd01895 EngA2 EngA2 subfamily. 99.4 1.2E-11 2.6E-16 118.7 14.9 160 2-174 5-171 (174)
31 PRK05291 trmE tRNA modificatio 99.3 6.7E-12 1.5E-16 142.8 14.3 154 2-179 218-371 (449)
32 cd01879 FeoB Ferrous iron tran 99.3 8.6E-12 1.9E-16 118.9 12.5 155 4-176 1-155 (158)
33 PRK09518 bifunctional cytidyla 99.3 6.3E-12 1.4E-16 150.4 14.0 160 2-179 278-437 (712)
34 PRK12297 obgE GTPase CgtA; Rev 99.3 6.8E-12 1.5E-16 141.4 13.4 163 2-178 161-327 (424)
35 TIGR03594 GTPase_EngA ribosome 99.3 1.4E-11 3.1E-16 138.3 15.2 162 2-176 175-342 (429)
36 PRK00093 GTP-binding protein D 99.3 1.3E-11 2.7E-16 139.3 14.3 158 2-178 4-162 (435)
37 cd01881 Obg_like The Obg-like 99.3 1.1E-11 2.3E-16 120.4 9.7 165 4-175 1-174 (176)
38 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 1.5E-11 3.3E-16 124.1 11.0 131 2-141 3-135 (196)
39 cd01861 Rab6 Rab6 subfamily. 99.3 6.3E-11 1.4E-15 113.7 14.6 155 2-176 3-160 (161)
40 PRK09554 feoB ferrous iron tra 99.3 4.9E-11 1.1E-15 143.4 16.6 183 2-200 6-194 (772)
41 cd04171 SelB SelB subfamily. 99.3 9.5E-11 2.1E-15 112.2 14.4 153 2-174 3-162 (164)
42 cd00881 GTP_translation_factor 99.3 6.7E-11 1.5E-15 115.9 13.7 158 2-179 2-188 (189)
43 cd04164 trmE TrmE (MnmE, ThdF, 99.3 5.1E-11 1.1E-15 112.8 12.2 151 2-175 4-154 (157)
44 TIGR03156 GTP_HflX GTP-binding 99.2 3.6E-11 7.9E-16 132.8 12.3 156 2-175 192-349 (351)
45 PRK04213 GTP-binding protein; 99.2 8.1E-11 1.8E-15 118.3 13.8 162 2-180 12-194 (201)
46 cd01878 HflX HflX subfamily. 99.2 6.9E-11 1.5E-15 119.3 11.2 159 2-176 44-203 (204)
47 TIGR00450 mnmE_trmE_thdF tRNA 99.2 1.4E-10 3E-15 131.8 14.7 119 2-136 206-324 (442)
48 TIGR03598 GTPase_YsxC ribosome 99.2 2.2E-10 4.8E-15 113.7 14.4 149 2-166 21-178 (179)
49 PRK00454 engB GTP-binding prot 99.2 2.1E-10 4.6E-15 114.2 14.1 159 2-177 27-193 (196)
50 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 1.8E-10 3.8E-15 111.2 13.0 151 1-175 2-163 (168)
51 cd00880 Era_like Era (E. coli 99.2 1.9E-10 4.1E-15 107.2 12.3 156 4-175 1-161 (163)
52 cd04160 Arfrp1 Arfrp1 subfamil 99.2 1.9E-10 4.1E-15 111.3 12.2 158 2-174 2-165 (167)
53 PRK11058 GTPase HflX; Provisio 99.1 1.7E-10 3.6E-15 130.6 11.0 163 2-179 200-363 (426)
54 TIGR00231 small_GTP small GTP- 99.1 1.5E-10 3.2E-15 108.0 8.8 153 2-173 4-159 (161)
55 PF00009 GTP_EFTU: Elongation 99.1 4.2E-10 9.2E-15 112.8 12.2 157 2-179 6-188 (188)
56 cd04145 M_R_Ras_like M-Ras/R-R 99.1 9.5E-10 2.1E-14 105.7 13.9 155 2-176 5-162 (164)
57 cd01863 Rab18 Rab18 subfamily. 99.1 1.1E-09 2.3E-14 105.4 13.9 158 2-176 3-160 (161)
58 cd01890 LepA LepA subfamily. 99.1 4.5E-10 9.7E-15 110.1 11.3 157 2-179 3-178 (179)
59 cd04142 RRP22 RRP22 subfamily. 99.1 1.1E-09 2.4E-14 111.3 14.5 163 2-175 3-171 (198)
60 cd00154 Rab Rab family. Rab G 99.1 4.5E-10 9.7E-15 105.7 10.8 148 2-174 3-158 (159)
61 cd04104 p47_IIGP_like p47 (47- 99.1 9.3E-10 2E-14 111.5 13.0 159 2-178 4-184 (197)
62 cd01896 DRG The developmentall 99.1 8.6E-10 1.9E-14 115.2 13.0 160 2-178 3-226 (233)
63 smart00178 SAR Sar1p-like memb 99.1 7.8E-10 1.7E-14 110.5 12.0 148 2-175 20-182 (184)
64 cd01884 EF_Tu EF-Tu subfamily. 99.1 1.5E-09 3.3E-14 110.5 14.0 147 2-168 5-173 (195)
65 cd04138 H_N_K_Ras_like H-Ras/N 99.1 2.5E-09 5.5E-14 102.0 14.5 154 2-175 4-159 (162)
66 cd01860 Rab5_related Rab5-rela 99.1 2E-09 4.4E-14 103.5 13.5 157 2-178 4-163 (163)
67 cd01866 Rab2 Rab2 subfamily. 99.0 1.9E-09 4.2E-14 105.3 12.9 158 2-177 7-165 (168)
68 KOG1191 Mitochondrial GTPase [ 99.0 8.6E-10 1.9E-14 123.5 11.5 125 2-135 271-402 (531)
69 cd04159 Arl10_like Arl10-like 99.0 3.5E-09 7.6E-14 99.8 13.8 149 2-174 2-157 (159)
70 cd04166 CysN_ATPS CysN_ATPS su 99.0 1.3E-09 2.7E-14 111.5 11.2 149 2-169 2-185 (208)
71 smart00175 RAB Rab subfamily o 99.0 1.9E-09 4.2E-14 103.4 11.6 154 2-177 3-161 (164)
72 CHL00071 tufA elongation facto 99.0 2.2E-09 4.7E-14 121.0 13.8 144 2-165 15-180 (409)
73 cd01864 Rab19 Rab19 subfamily. 99.0 3.6E-09 7.8E-14 102.6 13.6 153 2-176 6-164 (165)
74 cd04158 ARD1 ARD1 subfamily. 99.0 2.9E-09 6.3E-14 104.5 12.9 151 2-178 2-161 (169)
75 cd01889 SelB_euk SelB subfamil 99.0 2.8E-09 6.1E-14 106.9 12.8 158 2-179 3-187 (192)
76 cd01876 YihA_EngB The YihA (En 99.0 5E-09 1.1E-13 99.7 13.8 160 2-176 2-169 (170)
77 smart00173 RAS Ras subfamily o 99.0 3.4E-09 7.4E-14 102.2 12.8 156 2-177 3-161 (164)
78 COG1163 DRG Predicted GTPase [ 99.0 7.7E-10 1.7E-14 118.7 8.8 80 2-93 66-150 (365)
79 cd01868 Rab11_like Rab11-like. 99.0 3.3E-09 7.2E-14 102.6 12.6 156 2-177 6-164 (165)
80 cd00876 Ras Ras family. The R 99.0 5.5E-09 1.2E-13 99.4 13.9 154 2-175 2-158 (160)
81 cd04139 RalA_RalB RalA/RalB su 99.0 7.7E-09 1.7E-13 99.0 14.4 155 2-176 3-160 (164)
82 TIGR00437 feoB ferrous iron tr 99.0 1.8E-09 4E-14 126.8 12.1 153 6-177 1-154 (591)
83 cd04136 Rap_like Rap-like subf 99.0 5E-09 1.1E-13 100.6 13.1 154 2-175 4-160 (163)
84 TIGR02528 EutP ethanolamine ut 99.0 2E-09 4.4E-14 101.8 10.0 137 2-173 3-140 (142)
85 cd00879 Sar1 Sar1 subfamily. 99.0 7.4E-09 1.6E-13 102.9 14.2 150 2-176 22-189 (190)
86 cd01893 Miro1 Miro1 subfamily. 99.0 9E-09 2E-13 100.4 14.2 155 2-179 3-165 (166)
87 cd01886 EF-G Elongation factor 99.0 3.8E-09 8.3E-14 112.8 12.4 140 2-161 2-158 (270)
88 cd01888 eIF2_gamma eIF2-gamma 99.0 6.2E-09 1.4E-13 106.0 13.4 156 2-180 3-201 (203)
89 cd04119 RJL RJL (RabJ-Like) su 99.0 8.8E-09 1.9E-13 98.8 13.7 154 2-176 3-165 (168)
90 cd04156 ARLTS1 ARLTS1 subfamil 98.9 1.2E-08 2.7E-13 97.9 13.9 146 2-173 2-157 (160)
91 cd04123 Rab21 Rab21 subfamily. 98.9 1E-08 2.2E-13 97.7 13.2 154 2-176 3-160 (162)
92 cd01862 Rab7 Rab7 subfamily. 98.9 1.3E-08 2.9E-13 98.5 14.0 155 2-176 3-165 (172)
93 PF00350 Dynamin_N: Dynamin fa 98.9 2.2E-09 4.8E-14 104.6 8.6 112 2-132 1-168 (168)
94 PRK15467 ethanolamine utilizat 98.9 6.6E-09 1.4E-13 101.9 11.9 142 2-178 4-147 (158)
95 cd04151 Arl1 Arl1 subfamily. 98.9 4.7E-09 1E-13 101.2 10.7 150 2-174 2-156 (158)
96 PTZ00258 GTP-binding protein; 98.9 3.2E-09 6.9E-14 118.6 10.1 85 2-93 24-125 (390)
97 cd04175 Rap1 Rap1 subgroup. T 98.9 1.7E-08 3.8E-13 97.6 13.8 155 2-176 4-161 (164)
98 PLN03118 Rab family protein; P 98.9 1.1E-08 2.3E-13 104.4 12.9 174 2-198 17-194 (211)
99 cd04147 Ras_dva Ras-dva subfam 98.9 2.1E-08 4.6E-13 101.3 14.8 157 2-178 2-163 (198)
100 cd04137 RheB Rheb (Ras Homolog 98.9 1.2E-08 2.6E-13 100.4 12.6 154 2-175 4-160 (180)
101 PRK12736 elongation factor Tu; 98.9 9.9E-09 2.1E-13 115.1 13.5 157 2-178 15-201 (394)
102 cd04112 Rab26 Rab26 subfamily. 98.9 1.4E-08 3.1E-13 101.8 13.2 156 2-178 3-163 (191)
103 PRK09601 GTP-binding protein Y 98.9 7.7E-09 1.7E-13 114.5 12.2 85 2-93 5-106 (364)
104 cd04114 Rab30 Rab30 subfamily. 98.9 9.1E-09 2E-13 99.7 11.2 152 2-175 10-166 (169)
105 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.9 1.4E-08 3E-13 98.5 12.4 154 2-177 5-163 (166)
106 cd01900 YchF YchF subfamily. 98.9 3.6E-09 7.7E-14 113.3 9.0 85 2-93 1-102 (274)
107 cd00878 Arf_Arl Arf (ADP-ribos 98.9 1.3E-08 2.8E-13 97.7 12.1 150 2-174 2-156 (158)
108 cd04157 Arl6 Arl6 subfamily. 98.9 8.2E-09 1.8E-13 99.0 10.6 151 2-174 2-160 (162)
109 cd00882 Ras_like_GTPase Ras-li 98.9 1.3E-08 2.8E-13 93.2 11.3 149 4-173 1-155 (157)
110 cd04113 Rab4 Rab4 subfamily. 98.9 2.5E-08 5.4E-13 96.1 13.8 156 2-175 3-159 (161)
111 cd01867 Rab8_Rab10_Rab13_like 98.9 1.2E-08 2.7E-13 99.4 11.7 154 2-177 6-164 (167)
112 cd01899 Ygr210 Ygr210 subfamil 98.9 1.6E-08 3.5E-13 110.5 13.5 168 2-179 1-270 (318)
113 cd04154 Arl2 Arl2 subfamily. 98.9 2.8E-08 6.1E-13 97.6 14.0 149 2-174 17-171 (173)
114 cd04101 RabL4 RabL4 (Rab-like4 98.9 4.6E-08 1E-12 94.3 14.8 151 2-175 3-161 (164)
115 PRK12735 elongation factor Tu; 98.9 1.9E-08 4.1E-13 112.9 13.7 143 2-164 15-179 (396)
116 cd04140 ARHI_like ARHI subfami 98.9 3.1E-08 6.7E-13 96.4 13.4 155 2-174 4-161 (165)
117 cd01853 Toc34_like Toc34-like 98.9 1.9E-08 4.1E-13 106.4 12.4 125 2-138 34-165 (249)
118 COG2262 HflX GTPases [General 98.9 1E-08 2.3E-13 113.3 10.7 156 2-179 195-357 (411)
119 COG0370 FeoB Fe2+ transport sy 98.9 1.6E-08 3.5E-13 117.6 12.8 157 2-180 6-166 (653)
120 cd04124 RabL2 RabL2 subfamily. 98.8 1.5E-08 3.3E-13 98.5 10.7 152 2-178 3-158 (161)
121 cd01865 Rab3 Rab3 subfamily. 98.8 3.3E-08 7.2E-13 96.2 13.1 155 2-178 4-163 (165)
122 cd00157 Rho Rho (Ras homology) 98.8 1.5E-08 3.3E-13 98.0 10.5 150 2-174 3-169 (171)
123 cd04177 RSR1 RSR1 subgroup. R 98.8 3.9E-08 8.4E-13 96.0 13.3 156 2-177 4-163 (168)
124 cd04106 Rab23_lke Rab23-like s 98.8 5E-08 1.1E-12 93.7 13.7 150 2-174 3-159 (162)
125 PLN03127 Elongation factor Tu; 98.8 3.2E-08 6.9E-13 112.9 14.3 124 2-145 64-200 (447)
126 cd04111 Rab39 Rab39 subfamily. 98.8 4.1E-08 9E-13 100.7 13.8 156 2-178 5-166 (211)
127 cd04132 Rho4_like Rho4-like su 98.8 4.3E-08 9.3E-13 97.2 13.4 153 2-177 3-166 (187)
128 cd04107 Rab32_Rab38 Rab38/Rab3 98.8 3.8E-08 8.2E-13 99.5 13.0 158 2-177 3-167 (201)
129 TIGR00991 3a0901s02IAP34 GTP-b 98.8 2.9E-08 6.2E-13 107.7 12.5 126 2-137 41-168 (313)
130 PRK00049 elongation factor Tu; 98.8 2.9E-08 6.3E-13 111.5 13.0 143 2-164 15-179 (396)
131 PTZ00133 ADP-ribosylation fact 98.8 4.9E-08 1.1E-12 97.6 13.3 151 2-178 20-178 (182)
132 cd04155 Arl3 Arl3 subfamily. 98.8 3.2E-08 7E-13 96.4 11.7 149 2-174 17-171 (173)
133 cd04127 Rab27A Rab27a subfamil 98.8 5E-08 1.1E-12 95.9 13.1 155 2-177 7-176 (180)
134 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.8 7.3E-08 1.6E-12 95.1 14.2 150 2-174 18-172 (174)
135 cd04144 Ras2 Ras2 subfamily. 98.8 4.9E-08 1.1E-12 97.9 13.2 155 2-176 2-161 (190)
136 PRK12317 elongation factor 1-a 98.8 2.3E-08 5E-13 113.0 11.8 157 2-180 9-203 (425)
137 cd04116 Rab9 Rab9 subfamily. 98.8 6.3E-08 1.4E-12 94.3 13.1 153 2-175 8-168 (170)
138 cd04109 Rab28 Rab28 subfamily. 98.8 6.8E-08 1.5E-12 99.0 13.9 156 2-177 3-165 (215)
139 cd04110 Rab35 Rab35 subfamily. 98.8 6.4E-08 1.4E-12 97.9 13.5 153 2-177 9-166 (199)
140 cd01858 NGP_1 NGP-1. Autoanti 98.8 7.2E-09 1.6E-13 101.1 6.0 53 2-60 105-157 (157)
141 cd04176 Rap2 Rap2 subgroup. T 98.8 9E-08 2E-12 92.4 13.5 156 2-177 4-162 (163)
142 smart00174 RHO Rho (Ras homolo 98.8 2.3E-08 5.1E-13 97.5 9.2 152 2-176 1-170 (174)
143 cd01891 TypA_BipA TypA (tyrosi 98.8 4.6E-08 9.9E-13 98.4 11.5 115 2-136 5-131 (194)
144 cd04118 Rab24 Rab24 subfamily. 98.8 5.3E-08 1.1E-12 97.2 11.8 152 2-175 3-163 (193)
145 cd04135 Tc10 TC10 subfamily. 98.8 8.2E-08 1.8E-12 93.6 12.8 151 2-175 3-171 (174)
146 PTZ00369 Ras-like protein; Pro 98.8 1.2E-07 2.5E-12 95.0 13.9 157 2-178 8-167 (189)
147 TIGR00475 selB selenocysteine- 98.8 6.3E-08 1.4E-12 113.8 13.7 157 1-178 2-166 (581)
148 cd04148 RGK RGK subfamily. Th 98.7 9.6E-08 2.1E-12 98.7 13.4 154 2-177 3-162 (221)
149 cd04115 Rab33B_Rab33A Rab33B/R 98.7 1.3E-07 2.7E-12 92.7 13.4 153 2-174 5-165 (170)
150 cd04149 Arf6 Arf6 subfamily. 98.7 1.2E-07 2.6E-12 93.4 13.3 145 2-173 12-165 (168)
151 cd01870 RhoA_like RhoA-like su 98.7 5.4E-08 1.2E-12 95.0 10.7 151 2-175 4-172 (175)
152 TIGR00487 IF-2 translation ini 98.7 7.9E-08 1.7E-12 112.9 13.8 149 2-174 90-246 (587)
153 TIGR00993 3a0901s04IAP86 chlor 98.7 5.9E-08 1.3E-12 113.1 12.1 125 2-136 121-250 (763)
154 cd04122 Rab14 Rab14 subfamily. 98.7 1.7E-07 3.6E-12 91.2 13.5 153 2-175 5-161 (166)
155 PRK09602 translation-associate 98.7 8.1E-08 1.8E-12 108.0 12.6 85 2-94 4-113 (396)
156 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.7 9.3E-08 2E-12 95.4 11.6 152 2-177 6-169 (183)
157 COG0536 Obg Predicted GTPase [ 98.7 1.1E-07 2.5E-12 103.0 13.0 164 2-180 162-335 (369)
158 cd04150 Arf1_5_like Arf1-Arf5- 98.7 2.2E-07 4.7E-12 90.6 13.7 146 2-174 3-157 (159)
159 cd01892 Miro2 Miro2 subfamily. 98.7 2.1E-07 4.6E-12 91.6 13.6 153 2-176 7-164 (169)
160 COG0218 Predicted GTPase [Gene 98.7 1.9E-07 4.1E-12 95.1 13.2 160 2-177 27-196 (200)
161 cd04170 EF-G_bact Elongation f 98.7 1E-07 2.2E-12 101.2 11.8 115 2-136 2-130 (268)
162 cd04161 Arl2l1_Arl13_like Arl2 98.7 1.7E-07 3.8E-12 92.0 12.6 148 2-173 2-164 (167)
163 TIGR00491 aIF-2 translation in 98.7 1.7E-07 3.7E-12 110.1 14.5 112 1-136 6-135 (590)
164 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.7 1.5E-07 3.2E-12 93.1 11.8 155 2-176 5-162 (172)
165 TIGR00484 EF-G translation elo 98.7 1E-07 2.3E-12 114.1 12.6 115 2-136 13-141 (689)
166 cd04125 RabA_like RabA-like su 98.7 1.9E-07 4.2E-12 93.0 12.5 152 2-177 3-161 (188)
167 cd00877 Ran Ran (Ras-related n 98.7 1.5E-07 3.3E-12 92.3 11.4 152 2-177 3-158 (166)
168 cd01883 EF1_alpha Eukaryotic e 98.7 1.8E-07 3.9E-12 96.5 12.4 152 2-167 2-194 (219)
169 PRK05506 bifunctional sulfate 98.7 1.2E-07 2.6E-12 112.5 12.6 149 2-169 27-212 (632)
170 cd04146 RERG_RasL11_like RERG/ 98.7 2.1E-07 4.5E-12 90.3 12.0 155 2-175 2-161 (165)
171 PLN03110 Rab GTPase; Provision 98.7 1.8E-07 4E-12 96.2 12.2 157 2-180 15-176 (216)
172 cd04108 Rab36_Rab34 Rab34/Rab3 98.7 2.7E-07 5.8E-12 91.1 12.7 154 2-176 3-163 (170)
173 PRK05306 infB translation init 98.7 1.6E-07 3.4E-12 113.3 13.1 151 1-175 292-449 (787)
174 smart00177 ARF ARF-like small 98.7 4.4E-07 9.6E-12 89.9 14.1 149 2-176 16-172 (175)
175 PLN00223 ADP-ribosylation fact 98.6 5E-07 1.1E-11 90.4 14.6 150 2-177 20-177 (181)
176 PRK05124 cysN sulfate adenylyl 98.6 1.4E-07 3E-12 108.5 12.0 156 2-180 30-223 (474)
177 cd04162 Arl9_Arfrp2_like Arl9/ 98.6 3.2E-07 6.9E-12 89.9 12.7 111 2-136 2-113 (164)
178 KOG1489 Predicted GTP-binding 98.6 1.2E-07 2.5E-12 101.9 10.3 155 2-173 199-362 (366)
179 PRK10512 selenocysteinyl-tRNA- 98.6 2.6E-07 5.6E-12 109.3 14.1 158 1-178 2-166 (614)
180 PF10662 PduV-EutP: Ethanolami 98.6 1.8E-07 3.8E-12 91.1 9.7 135 2-173 4-141 (143)
181 PRK00007 elongation factor G; 98.6 3.3E-07 7.1E-12 109.9 14.2 115 2-136 13-141 (693)
182 PRK09435 membrane ATPase/prote 98.6 3.9E-07 8.6E-12 100.1 13.1 159 1-189 58-270 (332)
183 PLN03108 Rab family protein; P 98.6 2.5E-07 5.4E-12 94.7 10.8 157 2-176 9-166 (210)
184 CHL00189 infB translation init 98.6 3.3E-07 7.2E-12 109.7 13.3 152 1-176 246-408 (742)
185 cd04165 GTPBP1_like GTPBP1-lik 98.6 6.5E-07 1.4E-11 93.3 13.7 152 2-179 2-223 (224)
186 PLN03126 Elongation factor Tu; 98.6 3.2E-07 7E-12 105.5 12.5 126 2-149 84-224 (478)
187 TIGR00485 EF-Tu translation el 98.6 3.9E-07 8.5E-12 102.3 12.9 142 2-163 15-178 (394)
188 cd04130 Wrch_1 Wrch-1 subfamil 98.6 3.5E-07 7.6E-12 89.8 10.6 150 2-174 3-170 (173)
189 cd01871 Rac1_like Rac1-like su 98.6 8E-07 1.7E-11 88.2 12.8 151 2-175 4-172 (174)
190 PF04548 AIG1: AIG1 family; I 98.5 2.5E-07 5.4E-12 95.3 9.4 133 2-145 3-139 (212)
191 cd04117 Rab15 Rab15 subfamily. 98.5 1.1E-06 2.4E-11 85.5 13.3 152 2-175 3-159 (161)
192 TIGR01393 lepA GTP-binding pro 98.5 5.1E-07 1.1E-11 106.4 12.8 160 2-182 6-184 (595)
193 cd01850 CDC_Septin CDC/Septin. 98.5 8.6E-07 1.9E-11 95.2 13.3 60 2-61 7-74 (276)
194 cd04126 Rab20 Rab20 subfamily. 98.5 1.2E-06 2.5E-11 91.2 13.7 153 2-177 3-189 (220)
195 cd04168 TetM_like Tet(M)-like 98.5 7.8E-07 1.7E-11 93.4 12.4 115 2-136 2-130 (237)
196 cd04129 Rho2 Rho2 subfamily. 98.5 1.2E-06 2.7E-11 87.5 13.0 151 2-175 4-170 (187)
197 PRK12739 elongation factor G; 98.5 6.3E-07 1.4E-11 107.5 12.8 115 2-136 11-139 (691)
198 cd04143 Rhes_like Rhes_like su 98.5 1.3E-06 2.9E-11 92.2 13.7 154 2-175 3-168 (247)
199 COG3596 Predicted GTPase [Gene 98.5 1.6E-06 3.6E-11 91.9 14.0 162 3-178 43-222 (296)
200 cd01882 BMS1 Bms1. Bms1 is an 98.5 9.7E-07 2.1E-11 91.8 12.2 105 1-136 41-147 (225)
201 PRK04004 translation initiatio 98.5 1.3E-06 2.8E-11 102.8 14.7 111 1-135 8-136 (586)
202 cd04167 Snu114p Snu114p subfam 98.5 1.3E-06 2.8E-11 89.6 12.1 112 2-135 3-136 (213)
203 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 2.7E-07 5.9E-12 88.6 6.6 54 2-61 86-139 (141)
204 KOG4181 Uncharacterized conser 98.5 3.5E-06 7.5E-11 91.4 15.4 217 1-234 190-452 (491)
205 cd01874 Cdc42 Cdc42 subfamily. 98.5 1.8E-06 3.8E-11 85.8 12.4 152 2-175 4-172 (175)
206 smart00053 DYNc Dynamin, GTPas 98.4 1.5E-06 3.3E-11 91.6 12.3 121 2-136 29-206 (240)
207 PRK09563 rbgA GTPase YlqF; Rev 98.4 4.2E-07 9.2E-12 97.9 8.1 56 2-63 124-179 (287)
208 TIGR03680 eif2g_arch translati 98.4 1.6E-06 3.5E-11 97.8 13.1 156 2-180 7-198 (406)
209 TIGR02034 CysN sulfate adenyly 98.4 1.6E-06 3.4E-11 98.0 12.9 149 2-169 3-188 (406)
210 cd01849 YlqF_related_GTPase Yl 98.4 3.2E-07 6.9E-12 89.4 6.3 53 2-60 103-155 (155)
211 cd04169 RF3 RF3 subfamily. Pe 98.4 1.6E-06 3.5E-11 92.7 12.1 115 2-136 5-137 (267)
212 KOG1490 GTP-binding protein CR 98.4 6.7E-07 1.4E-11 100.7 8.7 161 2-174 171-337 (620)
213 COG1161 Predicted GTPases [Gen 98.4 4.3E-07 9.3E-12 99.6 7.1 74 2-87 135-208 (322)
214 cd04134 Rho3 Rho3 subfamily. 98.4 2E-06 4.3E-11 86.3 11.0 155 2-177 3-173 (189)
215 cd04105 SR_beta Signal recogni 98.4 4.4E-06 9.5E-11 85.4 13.6 132 2-151 3-141 (203)
216 PF05049 IIGP: Interferon-indu 98.4 2E-06 4.4E-11 95.7 11.6 198 2-221 38-267 (376)
217 TIGR00483 EF-1_alpha translati 98.4 2.1E-06 4.5E-11 97.4 11.7 158 2-180 10-205 (426)
218 PLN03071 GTP-binding nuclear p 98.3 4.7E-06 1E-10 86.1 12.8 151 2-177 16-171 (219)
219 KOG1486 GTP-binding protein DR 98.3 1.6E-06 3.4E-11 90.7 8.8 200 2-232 65-288 (364)
220 cd01885 EF2 EF2 (for archaea a 98.3 5.6E-06 1.2E-10 86.3 13.1 112 2-135 3-138 (222)
221 TIGR03596 GTPase_YlqF ribosome 98.3 1.1E-06 2.4E-11 94.1 8.1 54 2-61 121-174 (276)
222 cd04120 Rab12 Rab12 subfamily. 98.3 7.8E-06 1.7E-10 83.8 13.5 154 2-177 3-162 (202)
223 PRK10218 GTP-binding protein; 98.3 6.5E-06 1.4E-10 97.3 13.9 158 2-181 8-198 (607)
224 PRK05433 GTP-binding protein L 98.3 3.7E-06 8.1E-11 99.3 11.8 158 2-181 10-187 (600)
225 PF08477 Miro: Miro-like prote 98.3 2.6E-06 5.6E-11 78.2 8.2 116 2-133 2-119 (119)
226 PRK12289 GTPase RsgA; Reviewed 98.3 1E-06 2.2E-11 97.8 6.1 61 2-65 175-239 (352)
227 cd04128 Spg1 Spg1p. Spg1p (se 98.3 1.1E-05 2.3E-10 80.9 12.7 154 2-178 3-166 (182)
228 TIGR01394 TypA_BipA GTP-bindin 98.3 8.4E-06 1.8E-10 96.3 13.8 158 2-181 4-194 (594)
229 PF00025 Arf: ADP-ribosylation 98.3 2.3E-06 4.9E-11 85.3 7.7 147 2-174 17-172 (175)
230 cd04121 Rab40 Rab40 subfamily. 98.3 6.5E-06 1.4E-10 83.5 11.1 153 2-177 9-166 (189)
231 TIGR00157 ribosome small subun 98.2 1.1E-06 2.3E-11 92.8 5.6 60 2-65 123-186 (245)
232 TIGR02836 spore_IV_A stage IV 98.2 1.7E-05 3.8E-10 88.8 14.8 123 2-135 20-193 (492)
233 PRK04000 translation initiatio 98.2 7.3E-06 1.6E-10 92.8 12.0 160 2-180 12-203 (411)
234 PTZ00141 elongation factor 1- 98.2 6.8E-06 1.5E-10 93.9 11.9 149 2-168 10-203 (446)
235 PRK12288 GTPase RsgA; Reviewed 98.2 1.6E-06 3.4E-11 96.1 6.3 60 2-64 208-271 (347)
236 PRK13796 GTPase YqeH; Provisio 98.2 1.9E-06 4.1E-11 96.1 6.1 54 2-61 163-221 (365)
237 cd04103 Centaurin_gamma Centau 98.2 1.5E-05 3.1E-10 78.1 11.3 147 2-174 3-155 (158)
238 PF03193 DUF258: Protein of un 98.1 1.5E-06 3.2E-11 86.3 3.6 61 2-65 38-102 (161)
239 TIGR00750 lao LAO/AO transport 98.1 1.7E-05 3.7E-10 86.1 12.1 151 1-178 36-238 (300)
240 TIGR03597 GTPase_YqeH ribosome 98.1 2.7E-06 5.9E-11 94.6 6.0 56 2-63 157-217 (360)
241 PTZ00327 eukaryotic translatio 98.1 2E-05 4.3E-10 90.5 12.9 158 2-180 37-235 (460)
242 PRK13351 elongation factor G; 98.1 1.1E-05 2.5E-10 96.8 11.3 114 2-135 11-138 (687)
243 PTZ00132 GTP-binding nuclear p 98.1 4.1E-05 8.8E-10 78.3 13.0 151 2-176 12-166 (215)
244 TIGR00503 prfC peptide chain r 98.1 3E-05 6.6E-10 90.4 13.4 126 2-147 14-159 (527)
245 cd01875 RhoG RhoG subfamily. 98.1 3.2E-05 6.8E-10 77.9 11.4 154 2-179 6-178 (191)
246 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.0 6.9E-05 1.5E-09 75.4 13.6 153 2-175 8-177 (182)
247 smart00176 RAN Ran (Ras-relate 98.0 1.9E-05 4.1E-10 80.9 9.5 149 5-178 1-154 (200)
248 PRK12740 elongation factor G; 98.0 4.8E-05 1E-09 91.1 14.0 111 5-135 1-125 (668)
249 cd04131 Rnd Rnd subfamily. Th 98.0 4.5E-05 9.7E-10 76.3 10.9 152 2-175 4-173 (178)
250 TIGR00490 aEF-2 translation el 98.0 2.9E-05 6.3E-10 93.8 11.2 114 2-135 22-151 (720)
251 PRK00741 prfC peptide chain re 98.0 4.3E-05 9.4E-10 89.1 11.9 114 2-135 13-144 (526)
252 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.0 0.00015 3.2E-09 75.7 14.5 151 2-175 4-173 (222)
253 TIGR00092 GTP-binding protein 97.9 3.7E-05 8E-10 85.7 10.2 83 2-93 5-107 (368)
254 cd04133 Rop_like Rop subfamily 97.9 7.7E-05 1.7E-09 74.8 11.5 154 2-177 4-172 (176)
255 PTZ00416 elongation factor 2; 97.9 6.3E-05 1.4E-09 92.3 12.9 112 2-135 22-157 (836)
256 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.9 0.00012 2.7E-09 76.8 13.4 154 2-177 16-187 (232)
257 cd01859 MJ1464 MJ1464. This f 97.9 1.5E-05 3.3E-10 77.3 6.1 53 2-60 104-156 (156)
258 PRK00098 GTPase RsgA; Reviewed 97.9 1.3E-05 2.8E-10 87.0 5.9 61 1-64 166-230 (298)
259 PF00071 Ras: Ras family; Int 97.9 5.5E-05 1.2E-09 72.7 9.6 153 2-176 2-159 (162)
260 cd01873 RhoBTB RhoBTB subfamil 97.9 0.00011 2.3E-09 74.9 11.1 154 2-174 5-192 (195)
261 cd01854 YjeQ_engC YjeQ/EngC. 97.8 1.9E-05 4.1E-10 85.3 5.7 60 1-63 163-226 (287)
262 PRK07560 elongation factor EF- 97.8 8.7E-05 1.9E-09 89.9 11.5 112 2-135 23-152 (731)
263 KOG0448 Mitofusin 1 GTPase, in 97.8 0.0016 3.4E-08 76.6 19.9 23 2-24 112-134 (749)
264 cd01855 YqeH YqeH. YqeH is an 97.8 3.2E-05 6.9E-10 77.8 5.3 23 2-24 130-152 (190)
265 COG1162 Predicted GTPases [Gen 97.7 2.9E-05 6.4E-10 83.9 5.2 61 2-65 167-231 (301)
266 PRK13768 GTPase; Provisional 97.7 0.0001 2.3E-09 78.2 8.6 167 2-179 5-248 (253)
267 COG0012 Predicted GTPase, prob 97.7 0.00025 5.3E-09 78.6 11.5 82 2-93 5-107 (372)
268 KOG1487 GTP-binding protein DR 97.7 0.00018 3.9E-09 75.9 9.8 111 2-133 62-182 (358)
269 COG1100 GTPase SAR1 and relate 97.6 0.00056 1.2E-08 69.4 12.5 116 2-137 8-126 (219)
270 PLN00116 translation elongatio 97.6 0.00057 1.2E-08 84.2 13.6 112 2-135 22-163 (843)
271 PF03308 ArgK: ArgK protein; 97.6 0.00013 2.7E-09 77.6 6.6 145 2-175 32-227 (266)
272 PF09439 SRPRB: Signal recogni 97.6 0.00031 6.8E-09 71.2 9.0 132 2-152 6-145 (181)
273 COG0532 InfB Translation initi 97.6 0.00043 9.2E-09 79.5 11.1 146 1-174 7-166 (509)
274 KOG1424 Predicted GTP-binding 97.5 8.1E-05 1.8E-09 84.7 5.2 54 2-61 317-370 (562)
275 COG1703 ArgK Putative periplas 97.5 0.00064 1.4E-08 73.4 11.2 43 2-45 54-102 (323)
276 KOG0073 GTP-binding ADP-ribosy 97.4 0.0011 2.4E-08 65.9 10.7 148 2-174 19-174 (185)
277 PRK10463 hydrogenase nickel in 97.4 0.00049 1.1E-08 74.6 8.8 156 1-174 106-285 (290)
278 KOG1954 Endocytosis/signaling 97.4 0.0011 2.4E-08 73.0 10.9 135 1-153 60-239 (532)
279 PLN00043 elongation factor 1-a 97.3 0.0015 3.3E-08 75.0 11.0 153 2-168 10-203 (447)
280 cd04102 RabL3 RabL3 (Rab-like3 97.2 0.0032 7E-08 64.8 12.0 116 2-137 3-144 (202)
281 KOG0410 Predicted GTP binding 97.2 0.00029 6.2E-09 76.6 3.9 146 1-175 180-338 (410)
282 cd03112 CobW_like The function 97.2 0.0011 2.3E-08 65.5 7.4 90 1-93 2-128 (158)
283 KOG2485 Conserved ATP/GTP bind 97.1 0.00089 1.9E-08 72.6 6.5 70 2-76 146-220 (335)
284 TIGR00073 hypB hydrogenase acc 97.1 0.0032 6.9E-08 64.5 10.2 53 122-175 148-204 (207)
285 KOG0075 GTP-binding ADP-ribosy 97.0 0.00096 2.1E-08 65.2 5.6 111 2-135 23-135 (186)
286 COG5256 TEF1 Translation elong 97.0 0.0034 7.3E-08 70.5 10.7 166 2-192 10-219 (428)
287 KOG1145 Mitochondrial translat 97.0 0.0033 7.1E-08 72.4 10.5 150 1-174 155-312 (683)
288 PLN00023 GTP-binding protein; 97.0 0.0042 9.1E-08 68.5 11.1 116 2-137 24-166 (334)
289 KOG2037 Guanylate-binding prot 97.0 0.00029 6.2E-09 81.9 1.5 57 1-60 34-95 (552)
290 KOG0395 Ras-related GTPase [Ge 97.0 0.0048 1E-07 63.3 10.1 155 2-176 6-163 (196)
291 COG2229 Predicted GTPase [Gene 96.9 0.007 1.5E-07 61.3 10.8 152 2-175 13-175 (187)
292 cd03114 ArgK-like The function 96.9 0.0073 1.6E-07 59.1 10.4 21 1-21 1-21 (148)
293 PF00735 Septin: Septin; Inte 96.8 0.0041 8.9E-08 67.3 8.4 137 2-149 7-172 (281)
294 TIGR01425 SRP54_euk signal rec 96.7 0.0092 2E-07 68.1 11.2 29 1-29 102-136 (429)
295 PRK01889 GTPase RsgA; Reviewed 96.7 0.0011 2.4E-08 73.9 3.6 60 1-64 197-261 (356)
296 PRK12727 flagellar biosynthesi 96.7 0.0071 1.5E-07 70.5 9.9 62 1-62 352-441 (559)
297 PRK14845 translation initiatio 96.5 0.016 3.5E-07 72.5 12.0 103 10-136 472-592 (1049)
298 KOG0076 GTP-binding ADP-ribosy 96.5 0.0079 1.7E-07 60.5 7.5 160 2-179 20-188 (197)
299 PF04670 Gtr1_RagA: Gtr1/RagA 96.5 0.023 5E-07 60.0 11.4 133 2-145 2-134 (232)
300 KOG0462 Elongation factor-type 96.4 0.011 2.3E-07 68.3 9.2 160 3-185 64-242 (650)
301 COG1120 FepC ABC-type cobalami 96.4 0.0053 1.2E-07 65.6 6.3 21 1-21 30-50 (258)
302 COG3276 SelB Selenocysteine-sp 96.4 0.025 5.4E-07 64.1 11.7 155 2-177 3-161 (447)
303 KOG1144 Translation initiation 96.4 0.025 5.5E-07 67.2 12.0 150 1-175 477-684 (1064)
304 KOG1491 Predicted GTP-binding 96.3 0.0062 1.3E-07 66.9 6.1 81 2-92 23-123 (391)
305 COG1136 SalX ABC-type antimicr 96.2 0.0026 5.6E-08 66.7 2.6 21 1-21 33-53 (226)
306 COG1618 Predicted nucleotide k 96.2 0.03 6.5E-07 56.0 9.7 19 2-20 8-26 (179)
307 PF10220 DUF2146: Uncharacteri 96.2 1.4 3E-05 54.8 25.6 190 1-201 13-266 (895)
308 KOG0458 Elongation factor 1 al 96.1 0.032 6.9E-07 65.0 10.6 148 2-168 180-372 (603)
309 COG1116 TauB ABC-type nitrate/ 96.0 0.0037 8E-08 66.2 2.6 22 1-22 31-52 (248)
310 TIGR03348 VI_IcmF type VI secr 95.9 0.039 8.4E-07 70.6 11.2 147 3-158 115-281 (1169)
311 KOG0461 Selenocysteine-specifi 95.9 0.093 2E-06 57.9 12.4 113 2-138 10-138 (522)
312 KOG0094 GTPase Rab6/YPT6/Ryh1, 95.8 0.056 1.2E-06 55.5 9.9 156 2-181 25-188 (221)
313 PRK13695 putative NTPase; Prov 95.8 0.036 7.7E-07 55.1 8.2 20 2-21 3-22 (174)
314 KOG1547 Septin CDC10 and relat 95.6 0.011 2.5E-07 62.2 4.1 60 2-61 49-115 (336)
315 COG5192 BMS1 GTP-binding prote 95.6 0.053 1.1E-06 62.8 9.4 125 1-157 71-199 (1077)
316 COG3840 ThiQ ABC-type thiamine 95.6 0.0079 1.7E-07 61.3 2.6 23 1-23 27-49 (231)
317 PF00005 ABC_tran: ABC transpo 95.6 0.0071 1.5E-07 57.0 2.2 23 1-23 13-35 (137)
318 PF03266 NTPase_1: NTPase; In 95.5 0.04 8.7E-07 55.2 7.4 45 80-133 92-136 (168)
319 PRK14722 flhF flagellar biosyn 95.3 0.031 6.6E-07 63.0 6.3 21 1-21 139-159 (374)
320 COG4917 EutP Ethanolamine util 95.3 0.04 8.8E-07 52.9 6.1 138 2-175 4-143 (148)
321 cd01983 Fer4_NifH The Fer4_Nif 95.3 0.21 4.6E-06 42.9 10.4 62 1-93 1-68 (99)
322 KOG2484 GTPase [General functi 95.3 0.013 2.8E-07 65.6 3.2 57 2-66 255-312 (435)
323 cd00071 GMPK Guanosine monopho 95.2 0.018 3.8E-07 55.6 3.6 22 1-22 1-22 (137)
324 COG3523 IcmF Type VI protein s 95.2 0.051 1.1E-06 68.7 8.4 189 3-199 129-352 (1188)
325 cd03261 ABC_Org_Solvent_Resist 95.0 0.015 3.3E-07 60.4 2.7 22 1-22 28-49 (235)
326 cd03263 ABC_subfamily_A The AB 95.0 0.015 3.3E-07 59.6 2.6 22 1-22 30-51 (220)
327 PRK10416 signal recognition pa 95.0 0.12 2.7E-06 56.9 9.8 29 1-29 116-150 (318)
328 COG1101 PhnK ABC-type uncharac 94.9 0.016 3.4E-07 60.5 2.6 22 1-22 34-55 (263)
329 cd03264 ABC_drug_resistance_li 94.8 0.02 4.3E-07 58.5 3.0 22 1-22 27-48 (211)
330 TIGR00064 ftsY signal recognit 94.8 0.17 3.7E-06 54.5 10.3 29 1-29 74-108 (272)
331 cd03265 ABC_DrrA DrrA is the A 94.8 0.018 3.9E-07 59.3 2.7 22 1-22 28-49 (220)
332 KOG2655 Septin family protein 94.8 0.039 8.4E-07 61.6 5.3 59 3-61 25-90 (366)
333 TIGR01166 cbiO cobalt transpor 94.8 0.019 4E-07 57.8 2.6 22 1-22 20-41 (190)
334 TIGR00960 3a0501s02 Type II (G 94.8 0.018 4E-07 58.9 2.6 22 1-22 31-52 (216)
335 PF13521 AAA_28: AAA domain; P 94.8 0.015 3.2E-07 57.0 1.8 28 2-29 2-29 (163)
336 PF05879 RHD3: Root hair defec 94.8 3.4 7.4E-05 50.8 22.3 97 250-353 296-392 (742)
337 TIGR03263 guanyl_kin guanylate 94.8 0.024 5.2E-07 56.1 3.3 54 1-59 3-56 (180)
338 cd03269 ABC_putative_ATPase Th 94.7 0.02 4.4E-07 58.4 2.7 22 1-22 28-49 (210)
339 cd03260 ABC_PstB_phosphate_tra 94.7 0.019 4.2E-07 59.2 2.5 23 1-23 28-50 (227)
340 cd03225 ABC_cobalt_CbiO_domain 94.7 0.02 4.4E-07 58.3 2.6 22 1-22 29-50 (211)
341 COG5019 CDC3 Septin family pro 94.7 0.04 8.7E-07 61.3 5.1 59 2-62 26-94 (373)
342 cd03216 ABC_Carb_Monos_I This 94.6 0.022 4.8E-07 56.2 2.7 23 1-23 28-50 (163)
343 cd03224 ABC_TM1139_LivF_branch 94.6 0.021 4.5E-07 58.6 2.6 22 1-22 28-49 (222)
344 cd03110 Fer4_NifH_child This p 94.6 0.43 9.3E-06 47.3 11.9 66 48-135 91-156 (179)
345 PF13207 AAA_17: AAA domain; P 94.6 0.02 4.3E-07 52.8 2.2 27 1-27 1-28 (121)
346 cd03254 ABCC_Glucan_exporter_l 94.6 0.021 4.7E-07 58.9 2.6 23 1-23 31-53 (229)
347 cd03226 ABC_cobalt_CbiO_domain 94.6 0.022 4.7E-07 58.0 2.6 22 1-22 28-49 (205)
348 COG0410 LivF ABC-type branched 94.6 0.022 4.8E-07 59.8 2.7 22 1-22 31-52 (237)
349 COG4559 ABC-type hemin transpo 94.6 0.023 4.9E-07 59.3 2.7 22 1-22 29-50 (259)
350 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.6 0.023 4.9E-07 55.1 2.5 23 1-23 28-50 (144)
351 PRK11629 lolD lipoprotein tran 94.5 0.022 4.8E-07 59.1 2.6 22 1-22 37-58 (233)
352 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.5 0.024 5.1E-07 58.1 2.6 22 1-22 32-53 (218)
353 TIGR02673 FtsE cell division A 94.5 0.024 5.2E-07 57.9 2.6 22 1-22 30-51 (214)
354 KOG2423 Nucleolar GTPase [Gene 94.5 0.023 5.1E-07 63.4 2.7 54 2-61 310-363 (572)
355 KOG0092 GTPase Rab5/YPT51 and 94.5 0.26 5.7E-06 50.5 9.9 160 2-185 8-174 (200)
356 cd03257 ABC_NikE_OppD_transpor 94.5 0.024 5.2E-07 58.3 2.6 22 1-22 33-54 (228)
357 TIGR02211 LolD_lipo_ex lipopro 94.4 0.025 5.4E-07 58.1 2.7 22 1-22 33-54 (221)
358 cd03218 ABC_YhbG The ABC trans 94.4 0.026 5.6E-07 58.4 2.7 22 1-22 28-49 (232)
359 PRK11124 artP arginine transpo 94.4 0.026 5.5E-07 59.0 2.7 22 1-22 30-51 (242)
360 TIGR02315 ABC_phnC phosphonate 94.4 0.025 5.4E-07 58.9 2.6 22 1-22 30-51 (243)
361 cd03222 ABC_RNaseL_inhibitor T 94.4 0.024 5.1E-07 57.4 2.4 22 1-22 27-48 (177)
362 TIGR01978 sufC FeS assembly AT 94.4 0.025 5.4E-07 58.9 2.6 22 1-22 28-49 (243)
363 TIGR00235 udk uridine kinase. 94.4 0.023 4.9E-07 58.2 2.3 22 1-22 8-29 (207)
364 PRK14242 phosphate transporter 94.4 0.024 5.3E-07 59.5 2.6 22 1-22 34-55 (253)
365 TIGR02770 nickel_nikD nickel i 94.4 0.025 5.4E-07 58.7 2.6 22 1-22 14-35 (230)
366 cd03219 ABC_Mj1267_LivG_branch 94.4 0.025 5.5E-07 58.6 2.6 22 1-22 28-49 (236)
367 PRK14239 phosphate transporter 94.4 0.025 5.5E-07 59.3 2.6 22 1-22 33-54 (252)
368 TIGR03608 L_ocin_972_ABC putat 94.4 0.026 5.7E-07 57.2 2.7 22 1-22 26-47 (206)
369 cd03292 ABC_FtsE_transporter F 94.4 0.026 5.7E-07 57.6 2.7 22 1-22 29-50 (214)
370 cd03369 ABCC_NFT1 Domain 2 of 94.4 0.026 5.6E-07 57.5 2.6 22 1-22 36-57 (207)
371 KOG0468 U5 snRNP-specific prot 94.4 0.13 2.8E-06 60.8 8.4 113 2-134 131-261 (971)
372 cd03256 ABC_PhnC_transporter A 94.4 0.027 5.8E-07 58.5 2.7 22 1-22 29-50 (241)
373 cd03258 ABC_MetN_methionine_tr 94.3 0.026 5.7E-07 58.4 2.6 22 1-22 33-54 (233)
374 cd02023 UMPK Uridine monophosp 94.3 0.028 6E-07 56.9 2.7 22 1-22 1-22 (198)
375 cd03301 ABC_MalK_N The N-termi 94.3 0.027 5.9E-07 57.4 2.7 22 1-22 28-49 (213)
376 PRK10584 putative ABC transpor 94.3 0.027 5.9E-07 58.2 2.6 22 1-22 38-59 (228)
377 PRK13540 cytochrome c biogenes 94.3 0.028 6E-07 57.1 2.7 23 1-23 29-51 (200)
378 PRK14241 phosphate transporter 94.3 0.026 5.7E-07 59.6 2.6 22 1-22 32-53 (258)
379 PRK14262 phosphate ABC transpo 94.3 0.027 5.8E-07 59.1 2.6 22 1-22 31-52 (250)
380 cd03235 ABC_Metallic_Cations A 94.3 0.026 5.7E-07 57.7 2.5 22 1-22 27-48 (213)
381 cd03238 ABC_UvrA The excision 94.3 0.027 5.8E-07 56.9 2.5 21 1-21 23-43 (176)
382 PTZ00099 rab6; Provisional 94.3 0.1 2.2E-06 52.4 6.6 115 49-179 28-143 (176)
383 cd03253 ABCC_ATM1_transporter 94.3 0.027 5.9E-07 58.4 2.6 22 1-22 29-50 (236)
384 cd03259 ABC_Carb_Solutes_like 94.3 0.028 6.1E-07 57.5 2.7 22 1-22 28-49 (213)
385 PRK13541 cytochrome c biogenes 94.3 0.028 6.1E-07 56.8 2.6 23 1-23 28-50 (195)
386 cd03262 ABC_HisP_GlnQ_permease 94.3 0.028 6.1E-07 57.3 2.6 22 1-22 28-49 (213)
387 cd03266 ABC_NatA_sodium_export 94.3 0.028 6.1E-07 57.6 2.6 22 1-22 33-54 (218)
388 cd01130 VirB11-like_ATPase Typ 94.2 0.029 6.3E-07 56.6 2.6 22 1-22 27-48 (186)
389 cd03236 ABC_RNaseL_inhibitor_d 94.2 0.029 6.2E-07 59.8 2.7 22 1-22 28-49 (255)
390 cd03215 ABC_Carb_Monos_II This 94.2 0.029 6.4E-07 56.2 2.6 23 1-23 28-50 (182)
391 KOG0090 Signal recognition par 94.2 0.029 6.2E-07 58.3 2.5 127 2-152 41-178 (238)
392 cd03293 ABC_NrtD_SsuB_transpor 94.2 0.029 6.4E-07 57.7 2.7 22 1-22 32-53 (220)
393 cd03268 ABC_BcrA_bacitracin_re 94.2 0.03 6.4E-07 57.1 2.6 22 1-22 28-49 (208)
394 COG0378 HypB Ni2+-binding GTPa 94.2 0.071 1.5E-06 54.8 5.3 156 2-174 16-197 (202)
395 PRK13539 cytochrome c biogenes 94.2 0.03 6.5E-07 57.3 2.7 23 1-23 30-52 (207)
396 cd03116 MobB Molybdenum is an 94.2 0.026 5.7E-07 56.1 2.1 21 1-21 3-23 (159)
397 PRK14269 phosphate ABC transpo 94.2 0.029 6.3E-07 58.8 2.6 22 1-22 30-51 (246)
398 PRK15177 Vi polysaccharide exp 94.2 0.03 6.6E-07 57.7 2.7 23 1-23 15-37 (213)
399 COG3172 NadR Predicted ATPase/ 94.2 0.029 6.2E-07 56.1 2.3 24 2-25 11-37 (187)
400 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.2 0.029 6.2E-07 58.4 2.5 22 1-22 31-52 (238)
401 COG3638 ABC-type phosphate/pho 94.2 0.031 6.8E-07 59.0 2.7 21 1-21 32-52 (258)
402 cd01858 NGP_1 NGP-1. Autoanti 94.2 0.11 2.4E-06 50.6 6.4 89 78-175 3-92 (157)
403 PRK14247 phosphate ABC transpo 94.2 0.03 6.5E-07 58.8 2.6 22 1-22 31-52 (250)
404 PRK11264 putative amino-acid A 94.1 0.031 6.7E-07 58.6 2.7 22 1-22 31-52 (250)
405 TIGR03864 PQQ_ABC_ATP ABC tran 94.1 0.031 6.7E-07 58.2 2.7 22 1-22 29-50 (236)
406 cd03229 ABC_Class3 This class 94.1 0.032 6.9E-07 55.7 2.7 22 1-22 28-49 (178)
407 cd01859 MJ1464 MJ1464. This f 94.1 0.15 3.3E-06 49.4 7.3 93 75-178 4-96 (156)
408 PRK11889 flhF flagellar biosyn 94.1 0.059 1.3E-06 61.1 5.0 29 1-29 243-277 (436)
409 TIGR01189 ccmA heme ABC export 94.1 0.032 7E-07 56.5 2.7 22 1-22 28-49 (198)
410 PRK14250 phosphate ABC transpo 94.1 0.031 6.8E-07 58.5 2.6 22 1-22 31-52 (241)
411 cd03217 ABC_FeS_Assembly ABC-t 94.1 0.032 7E-07 56.8 2.6 22 1-22 28-49 (200)
412 PRK11248 tauB taurine transpor 94.1 0.032 6.8E-07 59.2 2.6 22 1-22 29-50 (255)
413 cd03296 ABC_CysA_sulfate_impor 94.1 0.032 7E-07 58.2 2.6 22 1-22 30-51 (239)
414 PRK14245 phosphate ABC transpo 94.1 0.031 6.7E-07 58.7 2.5 22 1-22 31-52 (250)
415 cd03297 ABC_ModC_molybdenum_tr 94.1 0.035 7.5E-07 56.9 2.8 22 1-22 25-46 (214)
416 PRK14240 phosphate transporter 94.1 0.032 6.9E-07 58.5 2.6 22 1-22 31-52 (250)
417 cd03295 ABC_OpuCA_Osmoprotecti 94.1 0.033 7.1E-07 58.2 2.7 22 1-22 29-50 (242)
418 cd03233 ABC_PDR_domain1 The pl 94.0 0.032 6.9E-07 57.0 2.4 23 1-23 35-57 (202)
419 PRK15056 manganese/iron transp 94.0 0.032 7E-07 59.6 2.6 22 1-22 35-56 (272)
420 PRK14268 phosphate ABC transpo 94.0 0.033 7.1E-07 58.9 2.6 23 1-23 40-62 (258)
421 PRK13651 cobalt transporter AT 94.0 0.033 7.1E-07 60.9 2.6 22 1-22 35-56 (305)
422 PRK14274 phosphate ABC transpo 94.0 0.032 6.9E-07 59.0 2.5 22 1-22 40-61 (259)
423 PRK09580 sufC cysteine desulfu 94.0 0.033 7.2E-07 58.2 2.6 22 1-22 29-50 (248)
424 cd03230 ABC_DR_subfamily_A Thi 94.0 0.036 7.7E-07 55.1 2.7 22 1-22 28-49 (173)
425 PRK10744 pstB phosphate transp 94.0 0.033 7.3E-07 58.9 2.6 22 1-22 41-62 (260)
426 PRK14248 phosphate ABC transpo 94.0 0.033 7.1E-07 59.3 2.5 22 1-22 49-70 (268)
427 cd03231 ABC_CcmA_heme_exporter 94.0 0.036 7.7E-07 56.5 2.7 23 1-23 28-50 (201)
428 TIGR02322 phosphon_PhnN phosph 94.0 0.033 7.2E-07 55.2 2.4 22 1-22 3-24 (179)
429 PRK11701 phnK phosphonate C-P 94.0 0.034 7.5E-07 58.7 2.6 22 1-22 34-55 (258)
430 cd03247 ABCC_cytochrome_bd The 94.0 0.036 7.8E-07 55.3 2.6 22 1-22 30-51 (178)
431 TIGR02324 CP_lyasePhnL phospho 94.0 0.035 7.7E-07 57.2 2.6 22 1-22 36-57 (224)
432 PRK14273 phosphate ABC transpo 94.0 0.035 7.5E-07 58.5 2.6 23 1-23 35-57 (254)
433 PRK14261 phosphate ABC transpo 93.9 0.036 7.7E-07 58.4 2.7 22 1-22 34-55 (253)
434 TIGR01184 ntrCD nitrate transp 93.9 0.036 7.8E-07 57.7 2.7 23 1-23 13-35 (230)
435 PRK10247 putative ABC transpor 93.9 0.036 7.8E-07 57.4 2.6 22 1-22 35-56 (225)
436 TIGR03740 galliderm_ABC gallid 93.9 0.036 7.9E-07 57.1 2.7 22 1-22 28-49 (223)
437 PRK14235 phosphate transporter 93.9 0.034 7.4E-07 59.2 2.5 22 1-22 47-68 (267)
438 COG1121 ZnuC ABC-type Mn/Zn tr 93.9 0.037 8E-07 59.1 2.7 21 1-21 32-52 (254)
439 TIGR03410 urea_trans_UrtE urea 93.9 0.036 7.9E-07 57.3 2.6 23 1-23 28-50 (230)
440 cd03245 ABCC_bacteriocin_expor 93.9 0.037 8E-07 56.8 2.6 23 1-23 32-54 (220)
441 PRK09544 znuC high-affinity zi 93.9 0.036 7.9E-07 58.7 2.6 22 1-22 32-53 (251)
442 TIGR01277 thiQ thiamine ABC tr 93.9 0.037 8.1E-07 56.7 2.6 22 1-22 26-47 (213)
443 PRK15112 antimicrobial peptide 93.9 0.037 8E-07 59.0 2.7 22 1-22 41-62 (267)
444 cd02019 NK Nucleoside/nucleoti 93.9 0.048 1.1E-06 46.3 2.9 22 1-22 1-22 (69)
445 cd03244 ABCC_MRP_domain2 Domai 93.9 0.037 8.1E-07 56.8 2.6 22 1-22 32-53 (221)
446 TIGR00972 3a0107s01c2 phosphat 93.9 0.037 7.9E-07 58.1 2.6 23 1-23 29-51 (247)
447 PRK10908 cell division protein 93.9 0.038 8.2E-07 56.9 2.7 22 1-22 30-51 (222)
448 PRK14267 phosphate ABC transpo 93.9 0.037 7.9E-07 58.2 2.6 22 1-22 32-53 (253)
449 TIGR02323 CP_lyasePhnK phospho 93.9 0.038 8.3E-07 58.1 2.7 22 1-22 31-52 (253)
450 PRK13543 cytochrome c biogenes 93.9 0.038 8.1E-07 56.8 2.6 22 1-22 39-60 (214)
451 PRK14259 phosphate ABC transpo 93.8 0.037 8E-07 59.1 2.6 22 1-22 41-62 (269)
452 PRK13643 cbiO cobalt transport 93.8 0.036 7.8E-07 59.9 2.5 22 1-22 34-55 (288)
453 PRK10078 ribose 1,5-bisphospho 93.8 0.04 8.6E-07 55.5 2.7 22 1-22 4-25 (186)
454 PRK13648 cbiO cobalt transport 93.8 0.038 8.1E-07 58.9 2.6 22 1-22 37-58 (269)
455 cd03251 ABCC_MsbA MsbA is an e 93.8 0.038 8.3E-07 57.2 2.6 23 1-23 30-52 (234)
456 PRK14738 gmk guanylate kinase; 93.8 0.046 1E-06 56.2 3.1 37 1-40 15-51 (206)
457 PRK13649 cbiO cobalt transport 93.8 0.038 8.2E-07 59.2 2.6 22 1-22 35-56 (280)
458 PRK14237 phosphate transporter 93.8 0.038 8.2E-07 58.9 2.5 23 1-23 48-70 (267)
459 PRK13646 cbiO cobalt transport 93.8 0.038 8.3E-07 59.5 2.6 22 1-22 35-56 (286)
460 PRK14737 gmk guanylate kinase; 93.8 0.051 1.1E-06 55.3 3.4 38 1-41 6-43 (186)
461 cd03294 ABC_Pro_Gly_Bertaine T 93.8 0.039 8.5E-07 58.9 2.6 22 1-22 52-73 (269)
462 PRK13638 cbiO cobalt transport 93.8 0.038 8.2E-07 58.9 2.5 22 1-22 29-50 (271)
463 PRK11300 livG leucine/isoleuci 93.8 0.039 8.4E-07 58.0 2.6 22 1-22 33-54 (255)
464 cd03223 ABCD_peroxisomal_ALDP 93.8 0.042 9E-07 54.4 2.6 22 1-22 29-50 (166)
465 PRK13538 cytochrome c biogenes 93.8 0.04 8.8E-07 56.1 2.6 23 1-23 29-51 (204)
466 PRK14251 phosphate ABC transpo 93.8 0.039 8.4E-07 57.9 2.6 23 1-23 32-54 (251)
467 PRK13641 cbiO cobalt transport 93.8 0.039 8.5E-07 59.5 2.6 22 1-22 35-56 (287)
468 PRK10575 iron-hydroxamate tran 93.8 0.038 8.3E-07 58.7 2.5 22 1-22 39-60 (265)
469 PRK10895 lipopolysaccharide AB 93.7 0.041 8.9E-07 57.4 2.7 22 1-22 31-52 (241)
470 PRK14266 phosphate ABC transpo 93.7 0.039 8.5E-07 57.9 2.6 22 1-22 31-52 (250)
471 PRK14255 phosphate ABC transpo 93.7 0.04 8.7E-07 57.9 2.6 22 1-22 33-54 (252)
472 cd03232 ABC_PDR_domain2 The pl 93.7 0.042 9.1E-07 55.6 2.6 23 1-23 35-57 (192)
473 PRK13644 cbiO cobalt transport 93.7 0.04 8.7E-07 59.0 2.6 22 1-22 30-51 (274)
474 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.7 0.041 8.9E-07 57.1 2.6 22 1-22 50-71 (224)
475 PRK14256 phosphate ABC transpo 93.7 0.04 8.7E-07 57.9 2.6 22 1-22 32-53 (252)
476 PRK14272 phosphate ABC transpo 93.7 0.041 9E-07 57.7 2.6 22 1-22 32-53 (252)
477 cd03250 ABCC_MRP_domain1 Domai 93.7 0.042 9.2E-07 55.8 2.6 22 1-22 33-54 (204)
478 TIGR03771 anch_rpt_ABC anchore 93.7 0.043 9.2E-07 56.9 2.7 22 1-22 8-29 (223)
479 PRK14270 phosphate ABC transpo 93.7 0.041 8.8E-07 57.9 2.5 22 1-22 32-53 (251)
480 cd03214 ABC_Iron-Siderophores_ 93.7 0.044 9.6E-07 54.8 2.7 22 1-22 27-48 (180)
481 cd03246 ABCC_Protease_Secretio 93.7 0.043 9.4E-07 54.5 2.6 22 1-22 30-51 (173)
482 KOG2486 Predicted GTPase [Gene 93.7 0.41 8.9E-06 51.9 9.9 55 2-60 139-193 (320)
483 PRK13650 cbiO cobalt transport 93.6 0.042 9.2E-07 59.0 2.6 22 1-22 35-56 (279)
484 PRK11231 fecE iron-dicitrate t 93.6 0.044 9.5E-07 57.8 2.6 22 1-22 30-51 (255)
485 cd03298 ABC_ThiQ_thiamine_tran 93.6 0.045 9.7E-07 55.9 2.6 22 1-22 26-47 (211)
486 TIGR02769 nickel_nikE nickel i 93.6 0.044 9.5E-07 58.3 2.6 22 1-22 39-60 (265)
487 PRK14249 phosphate ABC transpo 93.6 0.044 9.5E-07 57.6 2.6 22 1-22 32-53 (251)
488 PRK13632 cbiO cobalt transport 93.6 0.043 9.3E-07 58.6 2.6 22 1-22 37-58 (271)
489 PF13555 AAA_29: P-loop contai 93.6 0.054 1.2E-06 45.9 2.6 19 2-20 26-44 (62)
490 PRK13548 hmuV hemin importer A 93.6 0.044 9.6E-07 58.1 2.6 22 1-22 30-51 (258)
491 cd03234 ABCG_White The White s 93.6 0.045 9.8E-07 56.6 2.6 23 1-23 35-57 (226)
492 PRK13645 cbiO cobalt transport 93.6 0.044 9.5E-07 59.1 2.6 22 1-22 39-60 (289)
493 cd02025 PanK Pantothenate kina 93.5 0.045 9.8E-07 57.0 2.6 22 1-22 1-22 (220)
494 KOG0070 GTP-binding ADP-ribosy 93.5 0.13 2.7E-06 52.4 5.6 153 2-177 20-177 (181)
495 TIGR03005 ectoine_ehuA ectoine 93.5 0.046 1E-06 57.5 2.6 22 1-22 28-49 (252)
496 TIGR01360 aden_kin_iso1 adenyl 93.5 0.056 1.2E-06 53.6 3.1 20 1-20 5-24 (188)
497 PRK11614 livF leucine/isoleuci 93.5 0.047 1E-06 56.8 2.6 22 1-22 33-54 (237)
498 PRK10253 iron-enterobactin tra 93.5 0.045 9.7E-07 58.2 2.5 22 1-22 35-56 (265)
499 CHL00131 ycf16 sulfate ABC tra 93.5 0.047 1E-06 57.3 2.6 22 1-22 35-56 (252)
500 PRK14238 phosphate transporter 93.5 0.046 9.9E-07 58.5 2.5 22 1-22 52-73 (271)
No 1
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=100.00 E-value=5.1e-186 Score=1507.86 Aligned_cols=704 Identities=63% Similarity=0.996 Sum_probs=680.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
+|+|+|+||||||||||+||||+|++||+..||+|||||||++.+.+.++.|++||+||+||+||||| ++||+|+||||
T Consensus 39 VVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~i~p~i~vmDvEGTDGrERGED-qdFErksALFa 117 (772)
T KOG2203|consen 39 VVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAGIEPCILVMDVEGTDGRERGED-QDFERKSALFA 117 (772)
T ss_pred EEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhcCCCCceEEEecccCCccccccc-ccHHHHhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCC--ccEEEEEeCCC-CCChhchHHHHHHHHHHHhhcCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK--TTLMFVIRDKT-RTPLENLEPVLREDIQKIWDSVPK 157 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k--~~llfVIrd~d-~t~~e~l~~~l~~~l~~iw~~i~k 157 (772)
+++||||||||||||||+|||+||+||||||||||+||+++| ++++|||||+. .||+|+|+..+++++++||+++.|
T Consensus 118 iavSevvivNMW~~qIG~~Q~aN~~LLKTVfeV~lrLF~~rk~k~~LlFVIRD~~~~TplenLe~~l~~dlqkIW~sl~K 197 (772)
T KOG2203|consen 118 IAVSEVVIVNMWEHQIGLYQGANMALLKTVFEVNLRLFSPRKNKTLLLFVIRDKTGVTPLENLEDVLREDLQKIWDSLSK 197 (772)
T ss_pred HhhhheehhhHHHHHhhHhhccCcHHHHHHHHHHHHHhCCCCCceEEEEEEecccCCCchHHhhHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999966 99999999995 599999999999999999999999
Q ss_pred CCCccCCCchhhHHHHHhhcCCCccchhHHHHHHHHHHhhhccc-CCCCCCCCCCCCcccCCchhHhHHHHHHHHHhcCC
Q 004126 158 PQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHS-VAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKD 236 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~Lph~~~~~~~F~~~v~~Lr~~f~~~-~~~~~~~~~~~~~ip~dg~~~y~~~iW~~I~~nkd 236 (772)
|++++++++.||||+.|.+||||++++++|.++|..||+||+++ +.|++++++||++||+|||++|+++||++|++|||
T Consensus 198 Pe~~e~s~l~DfFdv~~v~Ls~~~~kedqF~e~V~~LrqrFv~s~~s~~~f~~d~~~~iPadGfs~~a~qiWd~Ie~NKD 277 (772)
T KOG2203|consen 198 PEGHENSPLNDFFDVEFVGLSHKELKEDQFKEQVASLRQRFVHSGISPYGFAGDYHGVIPADGFSFYAEQIWDVIEENKD 277 (772)
T ss_pred cccccCCchhhhhceeeeecchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCcccccchhhhHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999999999998 78888899999999999999999999999999999
Q ss_pred CCCchhHHHHHHhhhHHHHHHHHHhhhhhhhHHHHHHHHhcCChhhHHHHHHHHHHHHhhchhhhhccchHHHHHHHHHH
Q 004126 237 LDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQ 316 (772)
Q Consensus 237 LdlPtq~~mvA~~RC~Ei~~~~l~~f~~~~~~~~l~~~v~~g~v~~fg~~~~~~~~~~L~~yd~~AsrY~~~V~~~kr~e 316 (772)
|||||||+|||+|||+||++|+++.|.+++.|..+.+.++.|++++||+++..++++||++||++|+||+.+||++||++
T Consensus 278 LDLPtqqvlvAt~rceEIanE~~e~fitne~~~e~~e~l~g~l~s~l~~kL~~i~e~~lseYD~qAs~y~~~V~~~Krqq 357 (772)
T KOG2203|consen 278 LDLPTQQVLVATVRCEEIANEKLEEFITNEKWLELIEALQGNLVSGLGKKLSSILEECLSEYDEQASRYDEGVYSEKRQQ 357 (772)
T ss_pred CCCchhhhHHhhhhHHHHHHHHHHHhhhhhhHHHHHhhhcCCCccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHhHhHHHHHHHHHHHhhhhhhccCCCCchHHHHHH
Q 004126 317 LEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKF 396 (772)
Q Consensus 317 L~~~i~~~l~~~f~~~L~~l~~~~l~~fk~~l~~~l~~~~~F~~~~~~~~~~~~~~F~~~~~~~~i~~~~w~~s~~~~~l 396 (772)
|..++++.++|.|+.+|+|||+.+++.||.++.+.++.+++|++++..+.++|+..|+++|+++.++|+.|+.++++++|
T Consensus 358 L~~kl~s~v~~~fq~~L~~L~~~lle~fk~~~~~~~~~~~gF~es~~~~~~~~~~~fde~~E~~~~~~~~wd~ski~~Kl 437 (772)
T KOG2203|consen 358 LNEKLLSHVYPTFQDVLGHLREGLLESFKLAFEKALKATEGFSESVADGKQSCEKKFDEECETAKIEQALWDTSKIREKL 437 (772)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHhhhHhhcccccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHhhcCCCCChHHHHHHHHHHHHHHHHhhhhhhhcCCC--CCHHH
Q 004126 397 QRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYGFD--MDEET 474 (772)
Q Consensus 397 ~~~l~~~~~~~r~~~l~~l~~~~~k~l~~~l~~~v~~ll~~~~~d~W~~i~~~f~~~~~~~~~~~~~~~~~~~--~~~~e 474 (772)
.++|++|+.++|..+|++++..+++++..++++||+.+|+++++++||.|+++|++..+.++..+++...||+ +++++
T Consensus 438 s~diea~i~~lr~akLke~~~~~e~~l~~else~Ve~ll~~~s~evW~ti~n~f~~e~n~av~~~~~~~~~f~~~~de~t 517 (772)
T KOG2203|consen 438 SRDIEAHISSLRTAKLKEKTGLYEKKLVPELSEPVEALLDGASKEVWDTIRNLFRRETNTAVYGLSNAVYGFEIGLDEET 517 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHhhhHHHHHHHhccccccHHHHHHHHHhccchhHHHHhhcccccccccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccccCCCCCCccccCccchhhHHHHHHHHHHHHHhhHhheecC
Q 004126 475 KEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDSMPRVWTGKEDIRGITKLARSASLKLLSVMAAIRLD 554 (772)
Q Consensus 475 ~~~~~~~lr~~~~~~l~~~i~e~~~~~l~~l~~rFe~~FryDe~g~PR~W~~~~dI~~if~~Ar~~aL~ll~~la~~rl~ 554 (772)
++++++.||.+||..++.|++|++++|+++||+||+++||||.|||||+|++++||++||+.||++||+||+||+.||++
T Consensus 518 ~~~m~~nlk~~a~~~~etk~~ee~~~il~rmrdRFe~vFr~Dsd~mPrlWk~kedI~~~~r~ar~~aL~llsVla~irls 597 (772)
T KOG2203|consen 518 RDKMVKNLKNYAWGTVETKAKEEADRILMRMRDRFETVFRYDSDGMPRLWKGKEDIDAITRVARSAALKLLSVLAVIRLS 597 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccccCcchhHHHHHHHHHHHHHHHHHHHhheec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhhhhhccCCCCCccccCCCCCCCCCCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 004126 555 DETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQAISAQEANKR 634 (772)
Q Consensus 555 ~~~~~i~~~l~~~l~d~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~lLs~~~~~~i~~~Fk~~~~~~~~~Al~~qeakr~ 634 (772)
|+- +.+|+.++.+..++.+++ +.+.||++++ .++.|||||.||++||+||| +++|++.+|+.+||++
T Consensus 598 Dni---e~~l~v~l~~~e~~~~s~--i~t~d~lass-----~~~~tilt~vq~ksi~~qFk-rt~~~v~~d~k~s~~n-- 664 (772)
T KOG2203|consen 598 DNI---EKTLTVALADEESNETSS--IYTNDPLASS-----ASFATILTPVQCKSIWRQFK-RTEYTVTQDIKRSEIN-- 664 (772)
T ss_pred CCc---cccCccccccCCCCCCCc--ccccCccccC-----CccceeccHHHHHHHHHHHH-HhhhHHHHHHHHHHhc--
Confidence 654 445667888876554432 5678899865 77899999999999999999 8889999998888887
Q ss_pred CCCCCCcHHHHHHHHHhchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhhhhhhhHHHHHHHHH
Q 004126 635 NNNWLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLSTKFLPTVMNLLKK 714 (772)
Q Consensus 635 ~~~~~iP~w~~~ll~vLGwNE~m~vLrNPl~~~l~lv~~~~~~~~~vqld~~~~~~~g~l~g~i~~s~~~lp~~~~~~~~ 714 (772)
++++||||+|++|+||||||||++|||||||+++|++++++|++|+|++|+ +||+|+|||++|++++|.|++||++++
T Consensus 665 -t~t~iPPw~~vlLiVLG~NEFmallRNPl~l~~~~v~~~~~~~l~~q~~i~-ef~~~vl~~~~s~~~k~~~tv~n~lrq 742 (772)
T KOG2203|consen 665 -TNTWIPPWAIVLLIVLGWNEFMALLRNPLYLLVLFVGGLVSKALWVQGLIP-EFQNGVLPGVLSISGKFRTTVMNLLRQ 742 (772)
T ss_pred -CCCCCCcHHHHHHHHHhHHHHHHHHhchHHHHHHHHHHHHHHHHHHhccch-hhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 445677799999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHhcCC
Q 004126 715 LAEEGQ 720 (772)
Q Consensus 715 l~~~~~ 720 (772)
++.+||
T Consensus 743 ~ave~~ 748 (772)
T KOG2203|consen 743 LAVEGQ 748 (772)
T ss_pred HHHHhh
Confidence 999999
No 2
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=100.00 E-value=1.1e-170 Score=1498.54 Aligned_cols=702 Identities=47% Similarity=0.763 Sum_probs=661.0
Q ss_pred eCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC---CCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 5 FFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI---EPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 5 vG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~---~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
+|+||||||||||+||||+|.+|++ .||+||||||||++++.. .+.+++||+||+||+|||++ ++|||++|+|||
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~-~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~-~~fe~~~alf~l 78 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDE-SGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGED-QDFERKSALFAL 78 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCcccccc-ccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccc-cchHHHHHHHHH
Confidence 6999999999999999999999999 799999999999999874 78999999999999999998 779999999999
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC-----CCCccEEEEEeCCCC-CChhchHHHHHHHHHHHhhcC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS-----PRKTTLMFVIRDKTR-TPLENLEPVLREDIQKIWDSV 155 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~-----~~k~~llfVIrd~d~-t~~e~l~~~l~~~l~~iw~~i 155 (772)
++|||+|||||+||||||+|+|++|||||||||++||+ .+|++|+||||||+. ||++++++++.+++++||++|
T Consensus 79 a~s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfviRD~~~~tp~e~l~~~l~~dl~~iW~~i 158 (742)
T PF05879_consen 79 AVSDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVIRDHTGVTPLENLEETLREDLEKIWDSI 158 (742)
T ss_pred HhhhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEEeeCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999994 479999999999965 999999999999999999999
Q ss_pred CCCCCccCCCchhhHHHHHhhcCCCccchhHHHHHHHHHHhhhccc--CCCCCCCCCCCCcccCCchhHhHHHHHHHHHh
Q 004126 156 PKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHS--VAPGGLAGDRRGVVPASGFSFSAHEIWKVIKE 233 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~Lph~~~~~~~F~~~v~~Lr~~f~~~--~~~~~~~~~~~~~ip~dg~~~y~~~iW~~I~~ 233 (772)
.||++++++.++||||+.|++||||++++++|.++|++||+||.++ ..+.+++++||++||+|||++|+++||++|++
T Consensus 159 ~kP~~~~~~~~~d~Fd~~f~~LpH~~~~~e~F~~~v~~Lr~rf~~~~~~~~~~~~~~y~~~iP~dG~~~y~~~iW~~I~~ 238 (742)
T PF05879_consen 159 SKPEGFENSSLSDFFDLEFTALPHKILQPEKFNEDVAKLRQRFVDSKNIEDGLFKPEYHRRIPADGFSMYAENIWEQIKN 238 (742)
T ss_pred cCcccccCCChhheeeeeeeccCchhhhHHHHHHHHHHHHHHHhccCcCCCCCCchhhcCCCChHHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998 34444588999999999999999999999999
Q ss_pred cCCCCCchhHHHHHHhhhHHHHHHHHHhhhhh-----hhHHHHHHHHhcCChhhHHHHHHHHHHHHhhchhhhhccchHH
Q 004126 234 NKDLDLPAHKVMVATVRCEEIANEKYSSFAAN-----EEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEG 308 (772)
Q Consensus 234 nkdLdlPtq~~mvA~~RC~Ei~~~~l~~f~~~-----~~~~~l~~~v~~g~v~~fg~~~~~~~~~~L~~yd~~AsrY~~~ 308 (772)
||||||||||+|||+|||+||++++|..|.++ +.|..+++..+.+.+++||+.|.+++++||++||.+|+||+++
T Consensus 239 nkDLDLPtqq~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~l~~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~ 318 (742)
T PF05879_consen 239 NKDLDLPTQQEMLAQFRCDEIANEVLEEFDEDIKELIEKWSELEEAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKS 318 (742)
T ss_pred CccCCCCcHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999886 4455556666666799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHhHhHHHHHHHHHHHhhhhhhccCCCC
Q 004126 309 VRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWD 388 (772)
Q Consensus 309 V~~~kr~eL~~~i~~~l~~~f~~~L~~l~~~~l~~fk~~l~~~l~~~~~F~~~~~~~~~~~~~~F~~~~~~~~i~~~~w~ 388 (772)
||++||++|+++|...++++|+.||+|||++++++|++.+.+.++.+++|+..++.|.++++..|+++|+++.++++.|+
T Consensus 319 V~~~Kr~eL~~~i~~~l~~lf~~qL~~L~~~~l~~Fk~~l~~~lk~~~~Fa~~v~~~~~~~~~~F~~~a~~~~i~~~~ws 398 (742)
T PF05879_consen 319 VYQEKRQELESKIDSELQPLFQKQLKHLRKKLLESFKEALSSALKSGEDFAEAVRECKQSALEEFEESAEDLVIEGADWS 398 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 99999999999999999999999999999999999999999888888999999999999999999999999999999999
Q ss_pred c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHhhcCCCCChHHHHHHHHHHHHHHHHhhhhhhhcC
Q 004126 389 M-SKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYG 467 (772)
Q Consensus 389 ~-s~~~~~l~~~l~~~~~~~r~~~l~~l~~~~~k~l~~~l~~~v~~ll~~~~~d~W~~i~~~f~~~~~~~~~~~~~~~~~ 467 (772)
+ .++++.|.++|+++++++|.+++++|+++++|+++++|+++|..+|++|+++||++|++.|.+++++++++|.+++.|
T Consensus 399 ~se~~~~~L~~dLd~~~~~lR~~el~~l~~~~eK~l~~~l~e~v~~~l~~~~~d~Wd~I~~~f~~~~~~~~~~~~~~~~~ 478 (742)
T PF05879_consen 399 YSEEEREKLEEDLDEHSSKLRKEELNELVARIEKKLKSELKEPVESLLENPSPDMWDRIRKLFESATESAVSKFSDRLKG 478 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHhhhccccCCCCCCccccCccchhhHHHHHHHHHHHHH
Q 004126 468 FDMDEETKEKMLASLENYAKGVVEAKAREES--GRVLMRMKDRFTSLFSHDSDSMPRVWTGKEDIRGITKLARSASLKLL 545 (772)
Q Consensus 468 ~~~~~~e~~~~~~~lr~~~~~~l~~~i~e~~--~~~l~~l~~rFe~~FryDe~g~PR~W~~~~dI~~if~~Ar~~aL~ll 545 (772)
|++++++++.++++||.++|.+|+.+|||+. ++|+++||+||+++||||++|+||+|+++|||++||++||++||+||
T Consensus 479 f~~s~~e~~~~~~~lr~~aw~~l~~ki~e~~~~~~ll~~LkdRFe~~FryDe~g~PRvW~~eddI~~if~~ARe~AL~LL 558 (742)
T PF05879_consen 479 FGLSEEENEKALKKLRRKAWSVLREKIREEASEDNLLIRLKDRFEDKFRYDEDGVPRVWKPEDDIDAIFRKAREHALKLL 558 (742)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhCcCCCCCCCCCCCHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999995 99999999999999999999999999999999999999999999999
Q ss_pred hhHhheecCCCCcchhhhhhhhccCCCCCccccCCCCCCCCCCCCcCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHH
Q 004126 546 SVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQA 625 (772)
Q Consensus 546 ~~la~~rl~~~~~~i~~~l~~~l~d~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~lLs~~~~~~i~~~Fk~~~~~~~~~A 625 (772)
|+|+++|++++++++|++......+......++++..+.||+++++|++++++++||||.+|++||+||+++|+++|+||
T Consensus 559 ~vLa~iRL~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~l~~~~~~~~~~~~~lls~~~~~~i~~~Fk~~~~~~~~eA 638 (742)
T PF05879_consen 559 PVLAIIRLSDGSEIIPDVDISSLEPASSSPGSSESISAIDPLDSSEWEEVDEFATLLSESQCKSIWRQFKREIDYTYVEA 638 (742)
T ss_pred HHHHhhhccCCcccCcccchhhccccCcCcccccccccccccccccccccccceEeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887644333322211112234456789999999999999999999999999999999999999987
Q ss_pred hHHHHhhhcCCCCCCcHHHHHHHHHhchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhhhhhhh
Q 004126 626 ISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLSTKFL 705 (772)
Q Consensus 626 l~~qeakr~~~~~~iP~w~~~ll~vLGwNE~m~vLrNPl~~~l~lv~~~~~~~~~vqld~~~~~~~g~l~g~i~~s~~~l 705 (772)
++.+.+++++||+|||++|+||||||||+||||||||+++|++++++|++| |||+.| .+.+++
T Consensus 639 ----krs~~~~~~~iP~w~~~ll~vLGwNE~m~vLrnPl~~~l~li~~~~~~~~~-~l~l~~------------p~~~v~ 701 (742)
T PF05879_consen 639 ----KRSIISSNTQIPPWMYLLLLVLGWNEFMAVLRNPLYFTLLLILGGGFYVLY-QLNLWG------------PAIKVV 701 (742)
T ss_pred ----HHHHhcCCCCCCHHHHHHHHHHhHHHHHHHHHChHHHHHHHHHHHHHHHHH-Hhcchh------------HHHHHH
Confidence 445557889999999999999999999999999999999999999999999 999999 356899
Q ss_pred HHHHHHHHHHHhcCCCCCCC
Q 004126 706 PTVMNLLKKLAEEGQIPATN 725 (772)
Q Consensus 706 p~~~~~~~~l~~~~~~~~~~ 725 (772)
|++|+.+++++.++.....+
T Consensus 702 ~~~~~~~~~~~ke~l~~~~~ 721 (742)
T PF05879_consen 702 PTAMNEVKRLAKEKLREFLE 721 (742)
T ss_pred HHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999866
No 3
>COG1159 Era GTPase [General function prediction only]
Probab=99.96 E-value=3.8e-29 Score=263.47 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=135.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
||+|||+||+|||||||+|.|+|++||| +++||||+.++|+.+.++.||||+||||+|.+ ++.+ +++|++.|..|
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS---~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p-k~~l-~~~m~~~a~~s 82 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVS---PKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP-KHAL-GELMNKAARSA 82 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeec---CCcchhhhheeEEEEcCCceEEEEeCCCCCCc-chHH-HHHHHHHHHHH
Confidence 7999999999999999999999999999 69999999999999999999999999999966 5554 89999999999
Q ss_pred hhcccEEEEeecccc-ccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc-hHHHHHHHHHHH-hhcCCC
Q 004126 81 LAVSDIVLINMWCHD-IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN-LEPVLREDIQKI-WDSVPK 157 (772)
Q Consensus 81 La~sDvliiNl~~~d-ig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~-l~~~l~~~l~~i-w~~i~k 157 (772)
+.++|++++.+...+ .|. ++ ..++..+.. .++|+++++||+|..+.+. +........... +.++.+
T Consensus 83 l~dvDlilfvvd~~~~~~~--~d-~~il~~lk~--------~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivp 151 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP--GD-EFILEQLKK--------TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVP 151 (298)
T ss_pred hccCcEEEEEEeccccCCc--cH-HHHHHHHhh--------cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEE
Confidence 999999988887644 552 22 224454444 4789999999999876666 443333322222 778999
Q ss_pred CCCccCCCchhhHHHHHhhcCC
Q 004126 158 PQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~Lph 179 (772)
.||+.+.+++.+.+....+||.
T Consensus 152 iSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 152 ISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred eeccccCCHHHHHHHHHHhCCC
Confidence 9999999999999999999984
No 4
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.95 E-value=9e-28 Score=248.41 Aligned_cols=191 Identities=45% Similarity=0.686 Sum_probs=150.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC--CeeeecCCCCCCCCcccceeeEecCC---CCcEEEEecCCCCCcCCCCCccHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT--NFREMDAFKGRSQTTKGIWMARCAGI---EPCTLIMDLEGTDGRERGEDDTAFEKQ 75 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt--kfsims~~~~r~QTTrGiw~~i~~~~---~~qil~lDteG~~s~er~e~~~~fe~k 75 (772)
+|+|+|+|++|||||||+|+|+ .|++++ +.++|||||||+..+.. +.++++|||||+++.++++ ++.+
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~---~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~----~~~~ 81 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMD---TSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE----FEDD 81 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecC---CCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc----hhhh
Confidence 5899999999999999999999 999987 46999999999999874 6899999999999999873 6677
Q ss_pred HHHHHhhc--ccEEEEeeccccccccccCCHHHHHHHHHHH----HhhcCCCCccEEEEEeCCCC-CChhch-----HHH
Q 004126 76 SALFALAV--SDIVLINMWCHDIGREQAANKPLLKTVFQVM----MRLFSPRKTTLMFVIRDKTR-TPLENL-----EPV 143 (772)
Q Consensus 76 ~alfALa~--sDvliiNl~~~dig~~~~~n~~lLktv~evn----l~lf~~~k~~llfVIrd~d~-t~~e~l-----~~~ 143 (772)
..+||++. ||++|+|+|.+..+.+......++++.+..+ ...+..+++.++||+||++. .+.+.. ...
T Consensus 82 ~~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~~~~~~~~~~~~~~~ 161 (224)
T cd01851 82 ARLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLDTPLENLDITEGRET 161 (224)
T ss_pred hHHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCCccccccccccccch
Confidence 88888887 9999999999888877777777777653332 23344578999999999965 344443 356
Q ss_pred HHHHHHHHhhcCCCCCCccCCCchhhHHHHHhhcCC-------CccchhHHHHHHHHHHhhhcc
Q 004126 144 LREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSS-------FEEKEELFKEQVASLRQRFYH 200 (772)
Q Consensus 144 l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~~~Lph-------~~~~~~~F~~~v~~Lr~~f~~ 200 (772)
..++++++|+.|.+|.+ +...+.|+-......+| +...+++|.++++.||++|..
T Consensus 162 ~~~~~~~ir~~l~~~f~--~~~~~cf~l~~p~~~~~~~~~~~~~~~l~~eF~~~l~~L~~~~~~ 223 (224)
T cd01851 162 LIEDLNKIWSSIRKPFE--NPPIDCFFLPRPGLLHHLLQNEGRLKLLPPEFLEALKELRDRFFS 223 (224)
T ss_pred hHHHHHHHHHHHHhhcc--CCcchheeccccccchhhcccccchhhCCHHHHHHHHHHHHHhcC
Confidence 77888999999998865 33344444333333334 356688999999999999974
No 5
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.83 E-value=7.2e-20 Score=194.01 Aligned_cols=164 Identities=16% Similarity=0.113 Sum_probs=126.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
+|+|+|+||+|||||+|+|.|.++++++ +++||||..+.|+....+.+++|+||||++...+ . ...++.+.+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs---~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~-~-l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITS---PKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH-S-LNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecC---CCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc-h-HHHHHHHHHHHH
Confidence 6899999999999999999999999988 5899999999999988888999999999985533 2 366778888999
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcCCCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVPKPQ 159 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i~kps 159 (772)
+..+|++++.+...+. ......+++.+.+ .+.|+++|+||+|..+.+.+.+.+....... +..+.+.|
T Consensus 77 l~~aDvvl~VvD~~~~---~~~~~~i~~~l~~--------~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iS 145 (270)
T TIGR00436 77 IGGVDLILFVVDSDQW---NGDGEFVLTKLQN--------LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPIS 145 (270)
T ss_pred HhhCCEEEEEEECCCC---CchHHHHHHHHHh--------cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEe
Confidence 9999999887765432 2111223333333 5789999999999875554443333322211 34678899
Q ss_pred CccCCCchhhHHHHHhhcCCC
Q 004126 160 AHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~Lph~ 180 (772)
+..+.+++++++.....||..
T Consensus 146 A~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 146 ALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred cCCCCCHHHHHHHHHHhCCCC
Confidence 999999999999999888854
No 6
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=9e-19 Score=187.04 Aligned_cols=163 Identities=21% Similarity=0.210 Sum_probs=125.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
||+|+|+||||||||+|+|+|.++++++ +++||||..+.++.+..+.+++|+||||++..... .+.++.+.+..+
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs---~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~--l~~~~~~~~~~~ 81 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVS---PKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRA--LNRAMNKAAWSS 81 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecC---CCCCcccccEEEEEEcCCceEEEEECCCCCCchhH--HHHHHHHHHHHH
Confidence 6999999999999999999999999988 58999999999999877789999999999855533 367778888999
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC-ChhchHHHHHHHHHHH-hhcCCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT-PLENLEPVLREDIQKI-WDSVPKP 158 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t-~~e~l~~~l~~~l~~i-w~~i~kp 158 (772)
+..+|++++.+...+ + .......+++.+.. .+.|+++|+||+|.. +.+.+...+.+..+.. ...+.+.
T Consensus 82 ~~~~D~il~vvd~~~-~-~~~~~~~i~~~l~~--------~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~i 151 (292)
T PRK00089 82 LKDVDLVLFVVDADE-K-IGPGDEFILEKLKK--------VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPI 151 (292)
T ss_pred HhcCCEEEEEEeCCC-C-CChhHHHHHHHHhh--------cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence 999999988776544 1 11222223333332 468999999999987 5455554443332222 3457788
Q ss_pred CCccCCCchhhHHHHHhhcC
Q 004126 159 QAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lp 178 (772)
|+..+.+++++++.....+|
T Consensus 152 SA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 152 SALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred cCCCCCCHHHHHHHHHHhCC
Confidence 99999999999999988886
No 7
>PRK15494 era GTPase Era; Provisional
Probab=99.72 E-value=3.9e-17 Score=179.03 Aligned_cols=162 Identities=15% Similarity=0.091 Sum_probs=120.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
.|+|+|+||+|||||+|+|.|.++++++ +++||||+...++.+.++.+++|+||||.+.+.. . ....+.+.+..+
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs---~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~-~-l~~~~~r~~~~~ 128 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVT---PKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG-S-LEKAMVRCAWSS 128 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeecc---CCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc-c-HHHHHHHHHHHH
Confidence 3799999999999999999999999887 5899999999999988889999999999984433 3 367778888889
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH--hhcCCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI--WDSVPKP 158 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i--w~~i~kp 158 (772)
+..||++|+.+...+ + .......+++.+.+ .+.|.++|+||+|+.+. .+. .+.+.+... +..+.+.
T Consensus 129 l~~aDvil~VvD~~~-s-~~~~~~~il~~l~~--------~~~p~IlViNKiDl~~~-~~~-~~~~~l~~~~~~~~i~~i 196 (339)
T PRK15494 129 LHSADLVLLIIDSLK-S-FDDITHNILDKLRS--------LNIVPIFLLNKIDIESK-YLN-DIKAFLTENHPDSLLFPI 196 (339)
T ss_pred hhhCCEEEEEEECCC-C-CCHHHHHHHHHHHh--------cCCCEEEEEEhhcCccc-cHH-HHHHHHHhcCCCcEEEEE
Confidence 999999988765322 1 11111223333333 34566789999998543 222 223333322 2457889
Q ss_pred CCccCCCchhhHHHHHhhcCC
Q 004126 159 QAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lph 179 (772)
|+..+.+++++|+.....+|.
T Consensus 197 SAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred eccCccCHHHHHHHHHHhCCC
Confidence 999999999999999988874
No 8
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=1.4e-16 Score=176.84 Aligned_cols=160 Identities=18% Similarity=0.212 Sum_probs=125.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|||+||+|||||.|+|.|++.+|++. -|-|||++.-+.+.-....+.++||.|++.....+ .+.-++..|+.|+
T Consensus 6 VAIVGRPNVGKSTLFNRL~g~r~AIV~D---~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~-l~~~i~~Qa~~Ai 81 (444)
T COG1160 6 VAIVGRPNVGKSTLFNRLTGRRIAIVSD---TPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDE-LQELIREQALIAI 81 (444)
T ss_pred EEEECCCCCcHHHHHHHHhCCeeeEeec---CCCCccCCccceeEEcCceEEEEECCCCCcCCchH-HHHHHHHHHHHHH
Confidence 8999999999999999999999999985 58899999998888777789999999999322222 4788899999999
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCc
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 161 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~ 161 (772)
..||++|+.+.... |. ..+...+.+.+.. .++|+++|+||+|....+... .+.-..-..++.++|+.
T Consensus 82 ~eADvilfvVD~~~-Gi-t~~D~~ia~~Lr~--------~~kpviLvvNK~D~~~~e~~~---~efyslG~g~~~~ISA~ 148 (444)
T COG1160 82 EEADVILFVVDGRE-GI-TPADEEIAKILRR--------SKKPVILVVNKIDNLKAEELA---YEFYSLGFGEPVPISAE 148 (444)
T ss_pred HhCCEEEEEEeCCC-CC-CHHHHHHHHHHHh--------cCCCEEEEEEcccCchhhhhH---HHHHhcCCCCceEeehh
Confidence 99999998776422 21 2233444555555 779999999999866333222 22222226788999999
Q ss_pred cCCCchhhHHHHHhhcC
Q 004126 162 METPLSEFFNVEVVALS 178 (772)
Q Consensus 162 ~~~~l~dlf~~~~~~Lp 178 (772)
-+.++.|+.|..+..||
T Consensus 149 Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 149 HGRGIGDLLDAVLELLP 165 (444)
T ss_pred hccCHHHHHHHHHhhcC
Confidence 99999999999999998
No 9
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=5e-16 Score=173.25 Aligned_cols=168 Identities=13% Similarity=0.050 Sum_probs=114.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCc-EEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPC-TLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~q-il~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|||+||||||||||+|.+.+. +++ .++|||+..+.|+.+..+.+ ++|+||||++..... ..-+....+..
T Consensus 162 ValVG~PNaGKSTLln~Lt~~k~-~vs---~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~---~~~Lg~~~l~~ 234 (390)
T PRK12298 162 VGLLGLPNAGKSTFIRAVSAAKP-KVA---DYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE---GAGLGIRFLKH 234 (390)
T ss_pred EEEEcCCCCCHHHHHHHHhCCcc-ccc---CCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc---hhhHHHHHHHH
Confidence 79999999999999999999986 444 58999999999999887655 999999999843211 11122223457
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC--CCccEEEEEeCCCCCChhchHHHHHHHHHHH-hh-cCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WD-SVP 156 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~--~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~-~i~ 156 (772)
+..+|++++.+........ ....-++.+.+. +..+.+ ..+|.++|+||+|+.+.+.+.+.+.+..+.. |. .+.
T Consensus 235 i~radvlL~VVD~s~~~~~--d~~e~~~~l~~e-L~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi 311 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGS--DPVENARIIINE-LEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVY 311 (390)
T ss_pred HHhCCEEEEEeccCccccc--ChHHHHHHHHHH-HHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEE
Confidence 8899999887754322111 111112222221 111221 3578899999999876665554444433333 33 577
Q ss_pred CCCCccCCCchhhHHHHHhhcCC
Q 004126 157 KPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
+.|+..+.+++++++.+...||.
T Consensus 312 ~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 312 LISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred EEECCCCcCHHHHHHHHHHHhhh
Confidence 89999999999999998887763
No 10
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.65 E-value=1e-15 Score=161.62 Aligned_cols=194 Identities=16% Similarity=0.161 Sum_probs=128.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHH---HHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEK---QSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~---k~al 78 (772)
|+|||.||+|||||-|.|+|++++.+| .|.+|||+.+.|+++.++.|++|+||||+-++..+.. ...+. +...
T Consensus 75 vavIG~PNvGKStLtN~mig~kv~~vS---~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~-~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 75 VAVIGAPNVGKSTLTNQMIGQKVSAVS---RKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRR-HHLMMSVLQNPR 150 (379)
T ss_pred EEEEcCCCcchhhhhhHhhCCcccccc---ccccceeeeeeEEEecCceEEEEecCCcccccchhhh-HHHHHHhhhCHH
Confidence 899999999999999999999999998 5899999999999999999999999999987665422 22222 3567
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH----HHHHHH-HH---H
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE----PVLRED-IQ---K 150 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~----~~l~~~-l~---~ 150 (772)
-|+..+|+|++....++-+ ..-+..+|..+.++ .+.|=++|.||+|..+...+. ..|.+. +. .
T Consensus 151 ~a~q~AD~vvVv~Das~tr--~~l~p~vl~~l~~y-------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl 221 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATR--TPLHPRVLHMLEEY-------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL 221 (379)
T ss_pred HHHhhCCEEEEEEeccCCc--CccChHHHHHHHHH-------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence 7889999999988776633 22244567766664 578888999999865433221 222110 00 0
Q ss_pred Hhh--cCCCCCCccCCCchhhHHHHHhhcCCCc---cchhHHHHHHHHHHhhhcccCCCCCCCCCCCCcccCC
Q 004126 151 IWD--SVPKPQAHMETPLSEFFNVEVVALSSFE---EKEELFKEQVASLRQRFYHSVAPGGLAGDRRGVVPAS 218 (772)
Q Consensus 151 iw~--~i~kpsa~~~~~l~dlf~~~~~~Lph~~---~~~~~F~~~v~~Lr~~f~~~~~~~~~~~~~~~~ip~d 218 (772)
-|. .-..|+.... -...+=||++ +-.-.+-++|+.|++.+.+...|+ +..|+..++-+
T Consensus 222 ~v~~~f~~~p~~~~~--------~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g--pW~y~a~i~T~ 284 (379)
T KOG1423|consen 222 EVQEKFTDVPSDEKW--------RTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG--PWKYPADIVTE 284 (379)
T ss_pred hHHHHhccCCccccc--------ccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC--CCCCCcccccc
Confidence 011 0011111100 1122334433 335566789999999999766665 33566644433
No 11
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=99.63 E-value=8.9e-16 Score=162.57 Aligned_cols=189 Identities=20% Similarity=0.277 Sum_probs=116.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC--CeeeecCCCCCCCCcccceeeEecC---CCCcEEEEecCCCCCcCCCCCccHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT--NFREMDAFKGRSQTTKGIWMARCAG---IEPCTLIMDLEGTDGRERGEDDTAFEKQ 75 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt--kfsims~~~~r~QTTrGiw~~i~~~---~~~qil~lDteG~~s~er~e~~~~fe~k 75 (772)
+|+|+|++.+|||+|||.|+|. .|.+.. +...||+||||+..+. ++..++++||||+.+.++.. .....+
T Consensus 23 vvsi~G~~rtGKSfLln~l~~~~~gF~~~~---~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~~~~~--~~~d~~ 97 (260)
T PF02263_consen 23 VVSIVGPYRTGKSFLLNQLLGPQSGFSWGP---TVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDVEQSD--EKYDAK 97 (260)
T ss_dssp EEEEEEETTSSHHHHHHHHCCBSSSSESSS---CSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTTTCCC--CHHCHH
T ss_pred EEEeecCCccchHHHHHHHhcccccccccC---CCCCCCcceeeeecccccccceeEEEecchhccccccCc--ccccHH
Confidence 5899999999999999999984 687754 4578999999999763 45689999999998755541 344455
Q ss_pred HHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHH--Hh----------hcCCCCccEEEEEeCCCCC-ChhchHH
Q 004126 76 SALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVM--MR----------LFSPRKTTLMFVIRDKTRT-PLENLEP 142 (772)
Q Consensus 76 ~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evn--l~----------lf~~~k~~llfVIrd~d~t-~~e~l~~ 142 (772)
+...|+-.|.++|+|.. ..+ +.....-|..+.++. ++ -+....+.++|++||+... ..+.-..
T Consensus 98 if~Ls~LLSS~~IyN~~-~~i---~~~~l~~L~~~~~l~~~i~~~~~~~~~~~~~~~~fp~l~wlvRDf~~~~~~~~~~~ 173 (260)
T PF02263_consen 98 IFALSMLLSSVLIYNSM-GNI---DEDDLDQLELFTELAKHIRVKYGDSADSEDLGKPFPSLVWLVRDFSLELEDDGGKI 173 (260)
T ss_dssp HHHHHHHH-SEEEEEEC-SSS---SHHHHHCCHHHHHHHHHHHHTHHHHHHHHCTTTTCEEEEEEEECE-SCTCCTTECH
T ss_pred HHHHHHHHhCceeeCCC-Ccc---chhHHHHHHHHHHHHHHHHHhcccccchhhhcccchHHHHHHhhccchhhhccCCC
Confidence 55555558999999984 222 333333344444321 11 1223568899999999643 2222223
Q ss_pred HHHHHHHHHhhcCCCCCCcc-CC--------CchhhH-HHHHhhcCCCccc---------------hhHHHHHHHHHHhh
Q 004126 143 VLREDIQKIWDSVPKPQAHM-ET--------PLSEFF-NVEVVALSSFEEK---------------EELFKEQVASLRQR 197 (772)
Q Consensus 143 ~l~~~l~~iw~~i~kpsa~~-~~--------~l~dlf-~~~~~~Lph~~~~---------------~~~F~~~v~~Lr~~ 197 (772)
.-.++++..-. ...... +. .+..+| +...+.|||.... +++|.+++..|++.
T Consensus 174 t~~eyLe~~L~---~~~~~~~~~~~~N~iR~~I~~~F~~~~cf~Lp~P~~~~~~l~~l~~l~~~~L~~eF~~~l~~l~~~ 250 (260)
T PF02263_consen 174 TPQEYLEQALK---PESGQDEEIQERNKIRECIRSCFPSRDCFTLPHPGSDVDKLQNLDGLSLDDLDPEFVEQLDELVKY 250 (260)
T ss_dssp HHHHHHHHHCC---SSTSSSCCCCCHHHHHHHHHHHECCEEEEEEE-SSCCCCC-TCGCCCBGGGS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh---cccchhHHHHHhhHHHHHHHHHCCCCeEEEecCCCchhhhccCcccCChhhCCHHHHHHHHHHHHH
Confidence 34455554322 111111 11 133333 2234667776533 67999999999999
Q ss_pred hccc
Q 004126 198 FYHS 201 (772)
Q Consensus 198 f~~~ 201 (772)
+..+
T Consensus 251 i~~~ 254 (260)
T PF02263_consen 251 IFSS 254 (260)
T ss_dssp HHCC
T ss_pred Hhcc
Confidence 9964
No 12
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.62 E-value=6.8e-16 Score=151.75 Aligned_cols=148 Identities=18% Similarity=0.110 Sum_probs=109.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|+||||||||+|+|.|.+..+.+ .|.||...-.|.....+.++.++||||+++.... .-+.+.+...+
T Consensus 3 ialvG~PNvGKStLfN~Ltg~~~~v~n----~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~----s~ee~v~~~~l 74 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALTGAKQKVGN----WPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSK----SEEERVARDYL 74 (156)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEEEEE----STTSSSEEEEEEEEETTEEEEEEE----SSSSSS----SHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCCCceecC----CCCCCeeeeeEEEEecCceEEEEECCCcccCCCC----CcHHHHHHHHH
Confidence 799999999999999999999988765 6999999999999988899999999999976543 22335555555
Q ss_pred --hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHHhhcCC
Q 004126 82 --AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKIWDSVP 156 (772)
Q Consensus 82 --a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~iw~~i~ 156 (772)
...|++|..+....+ ..+..++..+.+ ...|+++|+|++|......+. +.|.+.+ --.+.
T Consensus 75 ~~~~~D~ii~VvDa~~l----~r~l~l~~ql~e--------~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L---g~pvi 139 (156)
T PF02421_consen 75 LSEKPDLIIVVVDATNL----ERNLYLTLQLLE--------LGIPVVVVLNKMDEAERKGIEIDAEKLSERL---GVPVI 139 (156)
T ss_dssp HHTSSSEEEEEEEGGGH----HHHHHHHHHHHH--------TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH---TS-EE
T ss_pred hhcCCCEEEEECCCCCH----HHHHHHHHHHHH--------cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh---CCCEE
Confidence 579999888766443 244556677777 789999999999976544332 3444433 23578
Q ss_pred CCCCccCCCchhhHHH
Q 004126 157 KPQAHMETPLSEFFNV 172 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~ 172 (772)
+.++..+.+++++++.
T Consensus 140 ~~sa~~~~g~~~L~~~ 155 (156)
T PF02421_consen 140 PVSARTGEGIDELKDA 155 (156)
T ss_dssp EEBTTTTBTHHHHHHH
T ss_pred EEEeCCCcCHHHHHhh
Confidence 8899999999999874
No 13
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.53 E-value=1.2e-13 Score=131.06 Aligned_cols=160 Identities=20% Similarity=0.156 Sum_probs=111.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|.+|+|||||+|+|.|.++.+++ +.++||+....++.......++++||||....... .+......+...+
T Consensus 6 i~~~G~~g~GKttl~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~ 80 (168)
T cd04163 6 VAIVGRPNVGKSTLLNALVGQKISIVS---PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK--LGERMVKAAWSAL 80 (168)
T ss_pred EEEECCCCCCHHHHHHHHhCCceEecc---CCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH--HHHHHHHHHHHHH
Confidence 789999999999999999999998876 46789999888888777788999999998744432 1344445566678
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC-ChhchHHHHHHHHHHH-hhcCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT-PLENLEPVLREDIQKI-WDSVPKPQ 159 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t-~~e~l~~~l~~~l~~i-w~~i~kps 159 (772)
..+|++++.+...+.. ......++..+.+ .+.|+++|+||+|.. ..+.+.+.+....... +..+...+
T Consensus 81 ~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~--------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s 150 (168)
T cd04163 81 KDVDLVLFVVDASEPI--GEGDEFILELLKK--------SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPIS 150 (168)
T ss_pred HhCCEEEEEEECCCcc--CchHHHHHHHHHH--------hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEE
Confidence 8999997766543331 1122223333333 468999999999987 3444443333222222 34566778
Q ss_pred CccCCCchhhHHHHHhh
Q 004126 160 AHMETPLSEFFNVEVVA 176 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~ 176 (772)
+..+.+++++|+.....
T Consensus 151 ~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 151 ALKGENVDELLEEIVKY 167 (168)
T ss_pred eccCCChHHHHHHHHhh
Confidence 88999999998876543
No 14
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.48 E-value=3.5e-13 Score=127.93 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=108.0
Q ss_pred EEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhh
Q 004126 3 HIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALA 82 (772)
Q Consensus 3 aIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa 82 (772)
+++|.+|+|||||+|+|+|.+....+ +.++||+.............+.++||||..+... .......+.....+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE---DTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec---CCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHHHHHHHHHHH
Confidence 58999999999999999999877665 4578999988877776778899999999984432 113334556677788
Q ss_pred cccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHh-hcCCCCCCc
Q 004126 83 VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPKPQAH 161 (772)
Q Consensus 83 ~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-~~i~kpsa~ 161 (772)
.+|++++.+...+. ....+..+++.+.+ ...|+++|+||+|..+.+.. .+.+.... ..+...|+.
T Consensus 76 ~~d~ii~v~d~~~~--~~~~~~~~~~~~~~--------~~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~ 141 (157)
T cd01894 76 EADVILFVVDGREG--LTPADEEIAKYLRK--------SKKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAE 141 (157)
T ss_pred hCCEEEEEEecccc--CCccHHHHHHHHHh--------cCCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEecc
Confidence 99999887654221 11223333333333 46899999999998654433 12222221 245677888
Q ss_pred cCCCchhhHHHHHhh
Q 004126 162 METPLSEFFNVEVVA 176 (772)
Q Consensus 162 ~~~~l~dlf~~~~~~ 176 (772)
.+.+++++|+.....
T Consensus 142 ~~~gv~~l~~~l~~~ 156 (157)
T cd01894 142 HGRGIGDLLDAILEL 156 (157)
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999877643
No 15
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.48 E-value=1.4e-13 Score=127.04 Aligned_cols=115 Identities=20% Similarity=0.267 Sum_probs=80.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|++|+|||||+|+|+|.+...++ ..+.||+....+.......++.|+||||+........... +...++..+
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~---~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~-~~~~~~~~~ 77 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVS---NIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGK-EIRKFLEQI 77 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEES---SSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHH-HHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcccccccc---ccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHH-HHHHHHHHH
Confidence 789999999999999999998877776 4688999998777666778889999999985443211011 233456666
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRD 131 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd 131 (772)
..+|++++.+...+ . .......+++.+ . .++|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~-~-~~~~~~~~~~~l--------~-~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASN-P-ITEDDKNILREL--------K-NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTS-H-SHHHHHHHHHHH--------H-TTSEEEEEEES
T ss_pred HHCCEEEEEEECCC-C-CCHHHHHHHHHH--------h-cCCCEEEEEcC
Confidence 89999988765433 1 111112222222 1 68999999987
No 16
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.47 E-value=5.5e-13 Score=148.77 Aligned_cols=225 Identities=19% Similarity=0.187 Sum_probs=147.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHH---HHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEK---QSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~---k~al 78 (772)
|+|+|+||+|||+|||+|.|..-+||+. -+-|||+++-.........+.++||-|+. |-. +..|+ .-|.
T Consensus 220 vvIiG~PNvGKSSLLNaL~~~d~AIVTd---I~GTTRDviee~i~i~G~pv~l~DTAGiR--et~---d~VE~iGIeRs~ 291 (454)
T COG0486 220 VVIIGRPNVGKSSLLNALLGRDRAIVTD---IAGTTRDVIEEDINLNGIPVRLVDTAGIR--ETD---DVVERIGIERAK 291 (454)
T ss_pred EEEECCCCCcHHHHHHHHhcCCceEecC---CCCCccceEEEEEEECCEEEEEEecCCcc--cCc---cHHHHHHHHHHH
Confidence 7899999999999999999999999995 68999999999999999999999999997 332 34454 5678
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCC
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 158 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kp 158 (772)
.++..||++|+.+...+.. +.....++. ..+.++|+++|+||.|+.+....... +...+ ..+...
T Consensus 292 ~~i~~ADlvL~v~D~~~~~--~~~d~~~~~---------~~~~~~~~i~v~NK~DL~~~~~~~~~--~~~~~--~~~i~i 356 (454)
T COG0486 292 KAIEEADLVLFVLDASQPL--DKEDLALIE---------LLPKKKPIIVVLNKADLVSKIELESE--KLANG--DAIISI 356 (454)
T ss_pred HHHHhCCEEEEEEeCCCCC--chhhHHHHH---------hcccCCCEEEEEechhcccccccchh--hccCC--CceEEE
Confidence 8899999998877654321 223333333 11257899999999998765543321 11111 125678
Q ss_pred CCccCCCchhhHHHHHhhcCCC-ccchhHH---HHHHHHHHhhhcccCCCCCCCCCCCCcccCCchhHhHHHHHHHHHhc
Q 004126 159 QAHMETPLSEFFNVEVVALSSF-EEKEELF---KEQVASLRQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEIWKVIKEN 234 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lph~-~~~~~~F---~~~v~~Lr~~f~~~~~~~~~~~~~~~~ip~dg~~~y~~~iW~~I~~n 234 (772)
|+.++.+++++-+-+...+..- .-+..-| .+++..|++-..+-.. .......+ .|+|=+...+...|+.+..
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~~~~~~~~~i~~~Rh~~~L~~a~~~l~~--a~~~~~~~-~~~dl~a~dLr~A~~~Lge- 432 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKGLGNQEGLFLSNLRHIQLLEQAAEHLED--ALQQLELG-QPLDLLAEDLRLAQEALGE- 432 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhcccccccceeecHHHHHHHHHHHHHHHH--HHhhhhcc-CChhhhHHHHHHHHHHHHH-
Confidence 8999999998887765544433 1111111 1122222222111000 00111112 2777778888888887765
Q ss_pred CCCCCchhHHHHHHhhhHHHHHHHHHhhh
Q 004126 235 KDLDLPAHKVMVATVRCEEIANEKYSSFA 263 (772)
Q Consensus 235 kdLdlPtq~~mvA~~RC~Ei~~~~l~~f~ 263 (772)
+.-.+--+++.++.+..|.
T Consensus 433 ----------ItG~~~~edlLd~IFs~FC 451 (454)
T COG0486 433 ----------ITGEFVSEDLLDEIFSNFC 451 (454)
T ss_pred ----------hhCCCchHHHHHHHHHhcc
Confidence 6666667777777777763
No 17
>PRK09866 hypothetical protein; Provisional
Probab=99.45 E-value=5e-11 Score=137.78 Aligned_cols=166 Identities=12% Similarity=0.142 Sum_probs=100.8
Q ss_pred CcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeecccc-ccccccCCHHHHHHHHHHHHhhcCCCC--ccEE
Q 004126 50 PCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHD-IGREQAANKPLLKTVFQVMMRLFSPRK--TTLM 126 (772)
Q Consensus 50 ~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~d-ig~~~~~n~~lLktv~evnl~lf~~~k--~~ll 126 (772)
.|++|+||||+|.+.+... +.+|++ ++..||+||+.+.+.. .+ ..+..+++.+.+ .+ .|++
T Consensus 230 ~QIIFVDTPGIhk~~~~~L-~k~M~e----qL~eADvVLFVVDat~~~s---~~DeeIlk~Lkk--------~~K~~PVI 293 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHL-QKMLNQ----QLARASAVLAVLDYTQLKS---ISDEEVREAILA--------VGQSVPLY 293 (741)
T ss_pred CCEEEEECCCCCCccchHH-HHHHHH----HHhhCCEEEEEEeCCCCCC---hhHHHHHHHHHh--------cCCCCCEE
Confidence 6999999999996554322 566665 6999999988887643 22 223345566655 33 5999
Q ss_pred EEEeCCCCCC-----hhchHHHHHHHHH--HH-hhcCCCCCCccCCCchhhHHHHHh--hcCCCccchhHHHHHHH--HH
Q 004126 127 FVIRDKTRTP-----LENLEPVLREDIQ--KI-WDSVPKPQAHMETPLSEFFNVEVV--ALSSFEEKEELFKEQVA--SL 194 (772)
Q Consensus 127 fVIrd~d~t~-----~e~l~~~l~~~l~--~i-w~~i~kpsa~~~~~l~dlf~~~~~--~Lph~~~~~~~F~~~v~--~L 194 (772)
+||||+|..+ .+.+.+.+...+. .+ +.+|.+.|+..+.++.++.+.+.. .||-+ +.+...++.+ .|
T Consensus 294 LVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~l~~~--~~~~wv~dfa~~~~ 371 (741)
T PRK09866 294 VLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGKLPPP--EQQRWVEDFAHAAL 371 (741)
T ss_pred EEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCCCCch--hhhHHHHHHHHHHh
Confidence 9999999764 3344444433332 22 678999999999999999998776 34533 3333333322 24
Q ss_pred HhhhcccCCCCCCCCCCCCcccCCchhHhHHHHHHHHHhcCCCCCchhHHHHHH
Q 004126 195 RQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVAT 248 (772)
Q Consensus 195 r~~f~~~~~~~~~~~~~~~~ip~dg~~~y~~~iW~~I~~nkdLdlPtq~~mvA~ 248 (772)
+.+|.... + .. ...+..-|...|+-= -++.|-|+.+-|-
T Consensus 372 gr~w~e~d----~-----~d--~e~l~~~A~~lwedS----~~~~~i~~~i~~~ 410 (741)
T PRK09866 372 GRRWRHAD----L-----AD--LEHIRHAADQLWEDS----LFAQPIQALLHAA 410 (741)
T ss_pred cccccccc----c-----cc--hHHHHHHHHHHHHhc----CccHHHHHHHHHH
Confidence 44544211 1 11 344566677777631 2344555544443
No 18
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.44 E-value=7.6e-13 Score=128.17 Aligned_cols=164 Identities=15% Similarity=0.057 Sum_probs=101.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCC-cEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEP-CTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~-qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|||++|+|||||+|+|.|....+ + ..+.||+....|....... .+.++||||....... ...+ .......
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~~~v-~---~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~-~~~~~~~ 75 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKPKI-A---DYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE--GKGL-GHRFLRH 75 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCCccc-c---CCCccccCCcceEEEcCCCCeEEEEecCcccCcccc--cCCc-hHHHHHH
Confidence 7899999999999999999988743 3 3466787776666655555 8999999998522111 0111 2233444
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC-CCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh-cCCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS-PRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD-SVPKP 158 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~-~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~-~i~kp 158 (772)
+..+|++++.+...+.. ....-+....+.-..... ...+|+++|+||.|+.+.......+.+.....|. .+...
T Consensus 76 ~~~~d~vi~v~D~~~~~----~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T cd01898 76 IERTRLLLHVIDLSGDD----DPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPI 151 (170)
T ss_pred HHhCCEEEEEEecCCCC----CHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEE
Confidence 66799998766543321 111112222221111111 1368889999999987655554444333333222 35678
Q ss_pred CCccCCCchhhHHHHHhh
Q 004126 159 QAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~ 176 (772)
|+..+.++.++|+.....
T Consensus 152 Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 152 SALTGEGLDELLRKLAEL 169 (170)
T ss_pred ecCCCCCHHHHHHHHHhh
Confidence 899999999999876654
No 19
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.44 E-value=7.5e-13 Score=151.21 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=113.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|||.||+|||||||+|.+.+..| + ..++||+....|.....+.++.|+||||+...... ..-+....+-.+
T Consensus 162 V~LVG~PNAGKSTLln~Ls~akpkI-a---dypfTTl~P~lGvv~~~~~~f~laDtPGliegas~---g~gLg~~fLrhi 234 (500)
T PRK12296 162 VGLVGFPSAGKSSLISALSAAKPKI-A---DYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE---GKGLGLDFLRHI 234 (500)
T ss_pred EEEEEcCCCCHHHHHHHHhcCCccc-c---ccCcccccceEEEEEECCeEEEEEECCCCccccch---hhHHHHHHHHHH
Confidence 7899999999999999999998876 3 46999999999999888889999999999632211 111222334456
Q ss_pred hcccEEEEeeccccc--cccccCCHHHH-HHHHHHHHhh-----c-CCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-
Q 004126 82 AVSDIVLINMWCHDI--GREQAANKPLL-KTVFQVMMRL-----F-SPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI- 151 (772)
Q Consensus 82 a~sDvliiNl~~~di--g~~~~~n~~lL-ktv~evnl~l-----f-~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i- 151 (772)
..+|++|+.+.+.+. ++..-.++..+ +.+.+.+-.+ + .-..+|.++|+||+|+.+...+.+.+.+.+...
T Consensus 235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g 314 (500)
T PRK12296 235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARG 314 (500)
T ss_pred HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcC
Confidence 789999887766442 22222222222 2222211100 0 013578999999999865444444444444433
Q ss_pred hhcCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 152 WDSVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 152 w~~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
| .+.+.|+..+.+++++++.....+..
T Consensus 315 ~-~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 315 W-PVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred C-eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4 47889999999999999887666543
No 20
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.43 E-value=4.7e-13 Score=148.99 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=124.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCC-ccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGED-DTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~-~~~fe~k~alfA 80 (772)
|+|||+||+|||||+|+|.|..=.|+++ -+-|||+.+-.-...++..+.++||-|+.-+.+-.. ...|-.--++-|
T Consensus 181 iaiiGrPNvGKSsLiN~ilgeeR~Iv~~---~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 181 IAIIGRPNVGKSSLINAILGEERVIVSD---IAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred EEEEeCCCCCchHHHHHhccCceEEecC---CCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 7999999999999999999999999995 689999999777777788999999999974443322 123334557889
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh-----hchHHHHHHHHHHH-hhc
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL-----ENLEPVLREDIQKI-WDS 154 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~-----e~l~~~l~~~l~~i-w~~ 154 (772)
+..|||+++.+..++-= ..+...++..+.+ ...++++|+||||.... +..+..+...+..+ |+.
T Consensus 258 I~~a~vvllviDa~~~~--~~qD~~ia~~i~~--------~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~ 327 (444)
T COG1160 258 IERADVVLLVIDATEGI--SEQDLRIAGLIEE--------AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAP 327 (444)
T ss_pred HhhcCEEEEEEECCCCc--hHHHHHHHHHHHH--------cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCe
Confidence 99999999988874422 1233445666666 78999999999997543 33445555555444 999
Q ss_pred CCCCCCccCCCchhhHHHHHh
Q 004126 155 VPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~ 175 (772)
+...|+..+.++..+|+-...
T Consensus 328 i~~iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 328 IVFISALTGQGLDKLFEAIKE 348 (444)
T ss_pred EEEEEecCCCChHHHHHHHHH
Confidence 999999999999999987643
No 21
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.43 E-value=9.1e-13 Score=148.01 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=117.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|||+||||||||+|+|.|.+.++++. .+.|||....+.....+..+.++||||++..... .+......+..++
T Consensus 2 i~ivG~~nvGKStL~n~l~~~~~~~v~~---~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~~~~~~~~~ 76 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDAIVSD---TPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDG--LDKQIREQAEIAI 76 (429)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcceecC---CCCcccCceEEEEEECCeEEEEEECCCCCCcchh--HHHHHHHHHHHHH
Confidence 8999999999999999999999888874 5789999988877767778999999999633221 2455556788899
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i~kpsa 160 (772)
..+|++++.+...+ | .......+.+.+.+ .++|+++|+||+|..+.+.... +...+ ...+.+.|+
T Consensus 77 ~~ad~vl~vvD~~~-~-~~~~d~~i~~~l~~--------~~~piilVvNK~D~~~~~~~~~----~~~~lg~~~~~~vSa 142 (429)
T TIGR03594 77 EEADVILFVVDGRE-G-LTPEDEEIAKWLRK--------SGKPVILVANKIDGKKEDAVAA----EFYSLGFGEPIPISA 142 (429)
T ss_pred hhCCEEEEEEeCCC-C-CCHHHHHHHHHHHH--------hCCCEEEEEECccCCcccccHH----HHHhcCCCCeEEEeC
Confidence 99999988776533 2 11122233344433 5789999999999765443221 12122 345677899
Q ss_pred ccCCCchhhHHHHHhhcCCC
Q 004126 161 HMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lph~ 180 (772)
..+.++.++++.....+|..
T Consensus 143 ~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 143 EHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred CcCCChHHHHHHHHHhcCcc
Confidence 99999999999998888764
No 22
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=1.6e-12 Score=139.32 Aligned_cols=154 Identities=21% Similarity=0.172 Sum_probs=110.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|.|.|||||||||+.|-|.+..|-+ .|=||||+..|..-.+...+=++||||+..++-.|. +..|+++ ..||
T Consensus 171 ivVaG~PNVGKSSlv~~lT~AkpEvA~----YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~Er-N~IE~qA-i~AL 244 (346)
T COG1084 171 IVVAGYPNVGKSSLVRKLTTAKPEVAP----YPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEER-NEIERQA-ILAL 244 (346)
T ss_pred EEEecCCCCcHHHHHHHHhcCCCccCC----CCccccceeEeeeecCCceEEEecCCcccCCChHHh-cHHHHHH-HHHH
Confidence 678999999999999999999999854 799999999999988888999999999998887775 8888865 4455
Q ss_pred h-cccEEEEeeccc-cccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcCCCC
Q 004126 82 A-VSDIVLINMWCH-DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVPKP 158 (772)
Q Consensus 82 a-~sDvliiNl~~~-dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i~kp 158 (772)
. ..+++|+.+... ..|-.-.....|+..+.+ + .+.|++.|+||.|....+.+++.-.. +... -.+..+.
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~----~---f~~p~v~V~nK~D~~~~e~~~~~~~~-~~~~~~~~~~~~ 316 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKE----L---FKAPIVVVINKIDIADEEKLEEIEAS-VLEEGGEEPLKI 316 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHH----h---cCCCeEEEEecccccchhHHHHHHHH-HHhhccccccce
Confidence 5 688998877652 223222223344455544 3 34889999999999888887754333 2222 2223455
Q ss_pred CCccCCCchhh
Q 004126 159 QAHMETPLSEF 169 (772)
Q Consensus 159 sa~~~~~l~dl 169 (772)
++..+..++..
T Consensus 317 ~~~~~~~~d~~ 327 (346)
T COG1084 317 SATKGCGLDKL 327 (346)
T ss_pred eeeehhhHHHH
Confidence 56555555443
No 23
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.41 E-value=2.3e-12 Score=124.73 Aligned_cols=163 Identities=21% Similarity=0.157 Sum_probs=100.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.|..+.+ + +.+.||+++-.+........+.++||||....... ....++.+ +..++
T Consensus 3 i~~~G~~~~GKssli~~l~~~~~~~-~---~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~-~~~~~ 76 (168)
T cd01897 3 LVIAGYPNVGKSSLVNKLTRAKPEV-A---PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLE-ERNTIEMQ-AITAL 76 (168)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCcc-C---CCCCcccceeEEEEccCceEEEEEECCCcCCcccc-CCchHHHH-HHHHH
Confidence 7899999999999999999998863 2 45788999988777666679999999998532211 11122222 22233
Q ss_pred h-cccEEEEeeccccccccc-cCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCC
Q 004126 82 A-VSDIVLINMWCHDIGREQ-AANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 159 (772)
Q Consensus 82 a-~sDvliiNl~~~dig~~~-~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kps 159 (772)
+ .+|++|+.+...+..... .....+++.+.+ .+ ...|+++|+||.|..+.+.+.. ..+....-...+.+.|
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~----~~--~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~S 149 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKP----LF--KNKPVIVVLNKIDLLTFEDLSE-IEEEEELEGEEVLKIS 149 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHh----hc--CcCCeEEEEEccccCchhhHHH-HHHhhhhccCceEEEE
Confidence 2 367776655443321110 001112222222 11 2689999999999865444432 2222221122366789
Q ss_pred CccCCCchhhHHHHHhhc
Q 004126 160 AHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~L 177 (772)
+..+.+++++|+.....|
T Consensus 150 a~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 150 TLTEEGVDEVKNKACELL 167 (168)
T ss_pred ecccCCHHHHHHHHHHHh
Confidence 999999999998776543
No 24
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.40 E-value=1.6e-12 Score=148.63 Aligned_cols=160 Identities=14% Similarity=0.064 Sum_probs=112.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|||+||||||||+|+|.|.++++++ ..+.+|+.+..+.....+..+.++||||.....++ ........+..++
T Consensus 41 V~IvG~~nvGKSSL~nrl~~~~~~~v~---~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~--~~~~~~~~~~~~~ 115 (472)
T PRK03003 41 VAVVGRPNVGKSTLVNRILGRREAVVE---DVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKG--LQASVAEQAEVAM 115 (472)
T ss_pred EEEEcCCCCCHHHHHHHHhCcCccccc---CCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchh--HHHHHHHHHHHHH
Confidence 899999999999999999999988876 46789999988877766778999999998732222 2344455677889
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCc
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 161 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~ 161 (772)
..||++|+.+...+-- ......+.+.+.. .++|+++|+||+|....+.-. .+....-.....+.|+.
T Consensus 116 ~~aD~il~VvD~~~~~--s~~~~~i~~~l~~--------~~~piilV~NK~Dl~~~~~~~---~~~~~~g~~~~~~iSA~ 182 (472)
T PRK03003 116 RTADAVLFVVDATVGA--TATDEAVARVLRR--------SGKPVILAANKVDDERGEADA---AALWSLGLGEPHPVSAL 182 (472)
T ss_pred HhCCEEEEEEECCCCC--CHHHHHHHHHHHH--------cCCCEEEEEECccCCccchhh---HHHHhcCCCCeEEEEcC
Confidence 9999998877654311 1111223333322 578999999999975322111 11111112334578999
Q ss_pred cCCCchhhHHHHHhhcCC
Q 004126 162 METPLSEFFNVEVVALSS 179 (772)
Q Consensus 162 ~~~~l~dlf~~~~~~Lph 179 (772)
.+.+++++|+..+..+|.
T Consensus 183 ~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 183 HGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCCcHHHHHHHHhhccc
Confidence 999999999999888865
No 25
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.40 E-value=2e-12 Score=141.87 Aligned_cols=164 Identities=15% Similarity=0.024 Sum_probs=109.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC-CCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG-IEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~-~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|||+||+|||||||+|.+.+..| + ..+-||+....|.... +...+.++||||+...... ..-+....+..
T Consensus 161 VglVG~PNaGKSTLln~ls~a~~~v-a---~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~---~~gLg~~flrh 233 (335)
T PRK12299 161 VGLVGLPNAGKSTLISAVSAAKPKI-A---DYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE---GAGLGHRFLKH 233 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCcc-C---CCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc---cccHHHHHHHH
Confidence 7899999999999999999988765 3 4688999999999876 4467999999999621111 11122334455
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC--CCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPK 157 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~--~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~k 157 (772)
+..+|++|+.+...+.. ...-++.+.+ .+..+.+ ..+|+++|+||+|+.+.+.+. ..+..........+.+
T Consensus 234 ie~a~vlI~ViD~s~~~-----s~e~~~~~~~-EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~ 307 (335)
T PRK12299 234 IERTRLLLHLVDIEAVD-----PVEDYKTIRN-ELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFL 307 (335)
T ss_pred hhhcCEEEEEEcCCCCC-----CHHHHHHHHH-HHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEE
Confidence 77899998877654321 1222222222 1222332 468999999999986544333 2222222222124778
Q ss_pred CCCccCCCchhhHHHHHhhcC
Q 004126 158 PQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~Lp 178 (772)
.|+..+.+++++|+.....++
T Consensus 308 iSAktg~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 308 ISAVTGEGLDELLRALWELLE 328 (335)
T ss_pred EEcCCCCCHHHHHHHHHHHHH
Confidence 899999999999998877664
No 26
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.39 E-value=1.6e-12 Score=148.64 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=112.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHH-HHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFE-KQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe-~k~alfA 80 (772)
|+|+|+||+|||||+|+|+|..+.+++ ..+.||+...-......+.++.++||||+..+.+.....++. .-.+..+
T Consensus 214 I~iiG~~nvGKSSLin~l~~~~~~~~s---~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~ 290 (472)
T PRK03003 214 VALVGKPNVGKSSLLNKLAGEERSVVD---DVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAA 290 (472)
T ss_pred EEEECCCCCCHHHHHHHHhCCCccccc---CCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHH
Confidence 789999999999999999999988776 468899988766665566788999999986333322112222 2224557
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc---hHHHHHHHHHHH-hhcCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN---LEPVLREDIQKI-WDSVP 156 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~---l~~~l~~~l~~i-w~~i~ 156 (772)
+..||++|+.+...+.- ...+..++..+.+ ...|+++|+||+|+.+.+. +...+.+.+..+ |..+.
T Consensus 291 i~~ad~vilV~Da~~~~--s~~~~~~~~~~~~--------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 360 (472)
T PRK03003 291 IEAAEVAVVLIDASEPI--SEQDQRVLSMVIE--------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRV 360 (472)
T ss_pred HhcCCEEEEEEeCCCCC--CHHHHHHHHHHHH--------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEE
Confidence 78999998877653311 1112223333333 5789999999999865332 222333333322 45566
Q ss_pred CCCCccCCCchhhHHHHHhhcC
Q 004126 157 KPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
..|+..+.+++++|+.....++
T Consensus 361 ~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 361 NISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999877665
No 27
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.39 E-value=3.1e-12 Score=140.08 Aligned_cols=165 Identities=14% Similarity=0.054 Sum_probs=107.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC-CcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE-PCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~-~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|||.||+|||||||+|.+.+..|. ..+.||+....|.....+ .++.++||||+...... ..-+....+..
T Consensus 160 V~lvG~pnaGKSTLl~~lt~~~~~va----~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~---~~gLg~~flrh 232 (329)
T TIGR02729 160 VGLVGLPNAGKSTLISAVSAAKPKIA----DYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE---GAGLGHRFLKH 232 (329)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc---cccHHHHHHHH
Confidence 78999999999999999999886653 368899999999987766 78999999999622110 11122333445
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC--CCccEEEEEeCCCCCChhchHHHHHHHHH-HHhhcCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRTPLENLEPVLREDIQ-KIWDSVPK 157 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~--~k~~llfVIrd~d~t~~e~l~~~l~~~l~-~iw~~i~k 157 (772)
+..+|++|+.+...+... ..-..-++.+.+. +..+.+ ..+|+++|+||+|+.+.+.+++. .+.+. .....+.+
T Consensus 233 ierad~ll~VvD~s~~~~--~~~~e~l~~l~~E-L~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~-~~~l~~~~~~~vi~ 308 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDG--RDPIEDYEIIRNE-LKKYSPELAEKPRIVVLNKIDLLDEEELAEL-LKELKKALGKPVFP 308 (329)
T ss_pred HHhhCEEEEEEcCccccc--cCHHHHHHHHHHH-HHHhhhhhccCCEEEEEeCccCCChHHHHHH-HHHHHHHcCCcEEE
Confidence 678999988776533210 0111122222221 222222 46889999999998655444332 22222 22224778
Q ss_pred CCCccCCCchhhHHHHHhhc
Q 004126 158 PQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~L 177 (772)
.|+..+.+++++++.....|
T Consensus 309 iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 309 ISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEccCCcCHHHHHHHHHHHh
Confidence 89999999999999877655
No 28
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=3e-12 Score=144.29 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=113.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCC-ccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGED-DTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~-~~~fe~k~alfA 80 (772)
|+|+|++|+|||||+|+|+|....++++ .+-||+..+.......+..+.++||||+..+.+-.. ...|....++.+
T Consensus 176 v~ivG~~n~GKStlin~ll~~~~~~~~~---~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~ 252 (435)
T PRK00093 176 IAIIGRPNVGKSSLINALLGEERVIVSD---IAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKA 252 (435)
T ss_pred EEEECCCCCCHHHHHHHHhCCCceeecC---CCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHH
Confidence 7899999999999999999998777663 577999887666656677899999999975443321 123334456678
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHH-hhcCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKI-WDSVP 156 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~i-w~~i~ 156 (772)
+..+|++|+.+...+ | ....+..+++.+.+ ..+|+++|+||+|..+.+..+ +.+...+..+ |..+.
T Consensus 253 ~~~ad~~ilViD~~~-~-~~~~~~~i~~~~~~--------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 253 IERADVVLLVIDATE-G-ITEQDLRIAGLALE--------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHCCEEEEEEeCCC-C-CCHHHHHHHHHHHH--------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEE
Confidence 899999988776533 1 12223334444444 568999999999987544322 3333333222 55677
Q ss_pred CCCCccCCCchhhHHHHHhh
Q 004126 157 KPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~ 176 (772)
..|+..+.+++++|+.....
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 88999999999999886543
No 29
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.38 E-value=1.7e-12 Score=155.31 Aligned_cols=166 Identities=15% Similarity=0.110 Sum_probs=115.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHH-HHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFE-KQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe-~k~alfA 80 (772)
|+|+|+||+|||||+|+|+|.++.+++ ..+.||++.........+.++.++||||+..+.+.....++. .-.+..+
T Consensus 453 I~ivG~~nvGKSSLin~l~~~~~~~v~---~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 453 VALVGRPNVGKSSLLNQLTHEERAVVN---DLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred EEEECCCCCCHHHHHHHHhCccccccC---CCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 789999999999999999999988877 468899999877776677789999999997544432212332 2235677
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc---hHHHHHHHHHHH-hhcCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN---LEPVLREDIQKI-WDSVP 156 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~---l~~~l~~~l~~i-w~~i~ 156 (772)
+..||++++.+...+ | ....+..++..+.+ ..+|+++|+||+|+.+.+. ++..+...+..+ |..+.
T Consensus 530 i~~advvilViDat~-~-~s~~~~~i~~~~~~--------~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 530 IERSELALFLFDASQ-P-ISEQDLKVMSMAVD--------AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred hhcCCEEEEEEECCC-C-CCHHHHHHHHHHHH--------cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEE
Confidence 889999988665432 1 11112223333333 5789999999999865433 222222222112 55667
Q ss_pred CCCCccCCCchhhHHHHHhhcCCC
Q 004126 157 KPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
..|+..+.+++++|+.....++.+
T Consensus 600 ~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 600 NLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 789999999999999998887753
No 30
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.36 E-value=1.2e-11 Score=118.69 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=104.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCC-CCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERG-EDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~-e~~~~fe~k~alfA 80 (772)
|.++|.+|+|||||+|+|+|..+.+.+ ..+.||+.............+.++||||....... +....+....++.+
T Consensus 5 i~i~G~~~~GKstli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 5 IAIIGRPNVGKSSLVNALLGEERVIVS---DIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred EEEEcCCCCCHHHHHHHHhCccceecc---CCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 789999999999999999999877665 35778888877666666667899999999744221 11123333334556
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh--hchH---HHHHHHHHHH-hhc
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL--ENLE---PVLREDIQKI-WDS 154 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~--e~l~---~~l~~~l~~i-w~~ 154 (772)
+..+|++++.+...+.. ...+..+++.+.+ ...|+++|+||+|..+. +.+. +.+.+.+..+ +..
T Consensus 82 ~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~--------~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (174)
T cd01895 82 IERADVVLLVIDATEGI--TEQDLRIAGLILE--------EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAP 151 (174)
T ss_pred HhhcCeEEEEEeCCCCc--chhHHHHHHHHHh--------cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCc
Confidence 78899998877653322 1112222333322 46899999999997644 2222 2233222211 345
Q ss_pred CCCCCCccCCCchhhHHHHH
Q 004126 155 VPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~ 174 (772)
+.+.|+..+.++.++++...
T Consensus 152 ~~~~Sa~~~~~i~~~~~~l~ 171 (174)
T cd01895 152 IVFISALTGQGVDKLFDAID 171 (174)
T ss_pred eEEEeccCCCCHHHHHHHHH
Confidence 66778999999998887643
No 31
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.35 E-value=6.7e-12 Score=142.78 Aligned_cols=154 Identities=16% Similarity=0.072 Sum_probs=106.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|.||+|||||+|+|.|.++++++ ..+.||++............+.++||||.... .. ....+..+.++..+
T Consensus 218 V~ivG~~nvGKSSLln~L~~~~~a~v~---~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~-~~-~ie~~gi~~~~~~~ 292 (449)
T PRK05291 218 VVIAGRPNVGKSSLLNALLGEERAIVT---DIAGTTRDVIEEHINLDGIPLRLIDTAGIRET-DD-EVEKIGIERSREAI 292 (449)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcccC---CCCCcccccEEEEEEECCeEEEEEeCCCCCCC-cc-HHHHHHHHHHHHHH
Confidence 789999999999999999999988776 46889999887776666778999999998621 11 00112224466678
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCc
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 161 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~ 161 (772)
..+|++++.+...+. . ....++.+.+ ....|+++|+||+|+.+..... ......+...|+.
T Consensus 293 ~~aD~il~VvD~s~~---~--s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~-------~~~~~~~i~iSAk 353 (449)
T PRK05291 293 EEADLVLLVLDASEP---L--TEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE-------EENGKPVIRISAK 353 (449)
T ss_pred HhCCEEEEEecCCCC---C--ChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh-------hccCCceEEEEee
Confidence 899999776654321 1 1111222211 2468999999999986543322 1112346678999
Q ss_pred cCCCchhhHHHHHhhcCC
Q 004126 162 METPLSEFFNVEVVALSS 179 (772)
Q Consensus 162 ~~~~l~dlf~~~~~~Lph 179 (772)
++.+++++++.....+++
T Consensus 354 tg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 354 TGEGIDELREAIKELAFG 371 (449)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999998777654
No 32
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.34 E-value=8.6e-12 Score=118.93 Aligned_cols=155 Identities=14% Similarity=0.046 Sum_probs=100.3
Q ss_pred EeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhc
Q 004126 4 IFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAV 83 (772)
Q Consensus 4 IvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~ 83 (772)
|+|.+|+|||||+|++.|..+.+ + ..++||+....+....+...+.++||||......... .....+..... ..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~-~---~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKV-G---NWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE-DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccc-c---CCCCcccccceEEEeeCCeEEEEEECCCccccCCCCh-hHHHHHHHhcC-CC
Confidence 68999999999999999987543 3 3688999987766666667899999999863322111 12222222221 58
Q ss_pred ccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCccC
Q 004126 84 SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 163 (772)
Q Consensus 84 sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~~~ 163 (772)
+|++|+.+...+. .....++..+.+ ..+|+++|+||+|..+.+.+.....+....+...+.+.|+..+
T Consensus 75 ~d~vi~v~d~~~~----~~~~~~~~~~~~--------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 142 (158)
T cd01879 75 PDLIVNVVDATNL----ERNLYLTLQLLE--------LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKG 142 (158)
T ss_pred CcEEEEEeeCCcc----hhHHHHHHHHHH--------cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCC
Confidence 9999776654321 112222222222 4689999999999865544433232222333445778899999
Q ss_pred CCchhhHHHHHhh
Q 004126 164 TPLSEFFNVEVVA 176 (772)
Q Consensus 164 ~~l~dlf~~~~~~ 176 (772)
.++.++|+.....
T Consensus 143 ~~~~~l~~~l~~~ 155 (158)
T cd01879 143 EGIDELKDAIAEL 155 (158)
T ss_pred CCHHHHHHHHHHH
Confidence 9999998776543
No 33
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.34 E-value=6.3e-12 Score=150.42 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=113.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|+||+|||||+|+|.|.++++++. .+.+|+....+.....+..+.++||||.+....+ .+......+..++
T Consensus 278 V~IvG~~nvGKSSL~n~l~~~~~~iv~~---~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~--~~~~~~~~~~~~~ 352 (712)
T PRK09518 278 VAIVGRPNVGKSTLVNRILGRREAVVED---TPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEG--IDSAIASQAQIAV 352 (712)
T ss_pred EEEECCCCCCHHHHHHHHhCCCceeecC---CCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCcc--HHHHHHHHHHHHH
Confidence 8999999999999999999999998874 6889999888777656678999999998732222 2444566778889
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCc
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 161 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~ 161 (772)
..||++|+.+...+ |. ......+.+.+.. .++|+++|+||+|....+... .+....-+..+.+.|+.
T Consensus 353 ~~aD~iL~VvDa~~-~~-~~~d~~i~~~Lr~--------~~~pvIlV~NK~D~~~~~~~~---~~~~~lg~~~~~~iSA~ 419 (712)
T PRK09518 353 SLADAVVFVVDGQV-GL-TSTDERIVRMLRR--------AGKPVVLAVNKIDDQASEYDA---AEFWKLGLGEPYPISAM 419 (712)
T ss_pred HhCCEEEEEEECCC-CC-CHHHHHHHHHHHh--------cCCCEEEEEECcccccchhhH---HHHHHcCCCCeEEEECC
Confidence 99999988776532 11 1111223333322 689999999999975322111 11111112345678999
Q ss_pred cCCCchhhHHHHHhhcCC
Q 004126 162 METPLSEFFNVEVVALSS 179 (772)
Q Consensus 162 ~~~~l~dlf~~~~~~Lph 179 (772)
.+.+++++|+.....+|-
T Consensus 420 ~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCCchHHHHHHHHhccc
Confidence 999999999998888764
No 34
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.34 E-value=6.8e-12 Score=141.42 Aligned_cols=163 Identities=14% Similarity=0.064 Sum_probs=107.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC-CCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI-EPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~-~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|++||+||+|||||||+|.+.+..|- ..+-||+....|..... ..++.++||||+..... . ..-+....+..
T Consensus 161 VglVG~pNaGKSTLLn~Lt~ak~kIa----~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~--~-~~gLg~~fLrh 233 (424)
T PRK12297 161 VGLVGFPNVGKSTLLSVVSNAKPKIA----NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS--E-GVGLGHQFLRH 233 (424)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccc----cCCcceeceEEEEEEEeCCceEEEEECCCCccccc--c-cchHHHHHHHH
Confidence 78999999999999999999997763 35889999999988765 67899999999962111 0 11122233445
Q ss_pred hhcccEEEEeeccccc-cccccCCHHHHHHHHHHHHhhcCC--CCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCC
Q 004126 81 LAVSDIVLINMWCHDI-GREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 157 (772)
Q Consensus 81 La~sDvliiNl~~~di-g~~~~~n~~lLktv~evnl~lf~~--~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~k 157 (772)
+..+|++|+.+...+. ++..-. -++.+.+ .+..+.+ ..+|.++|+||+|+...+...+.+.+.+. + .+.+
T Consensus 234 ier~~llI~VID~s~~~~~dp~e---~~~~i~~-EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--~-~i~~ 306 (424)
T PRK12297 234 IERTRVIVHVIDMSGSEGRDPIE---DYEKINK-ELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--P-KVFP 306 (424)
T ss_pred HhhCCEEEEEEeCCccccCChHH---HHHHHHH-HHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--C-cEEE
Confidence 6789999887766433 221111 1222221 1222332 46899999999997422211122222222 3 4778
Q ss_pred CCCccCCCchhhHHHHHhhcC
Q 004126 158 PQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~Lp 178 (772)
.|+.++.+++++++.....++
T Consensus 307 iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 307 ISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999998876654
No 35
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.33 E-value=1.4e-11 Score=138.34 Aligned_cols=162 Identities=16% Similarity=0.154 Sum_probs=111.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCC-ccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGED-DTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~-~~~fe~k~alfA 80 (772)
|+|+|.+|+|||||+|+|+|....++++ .+.||+..+.......+..+.++||||+....+-.. ...|....++.+
T Consensus 175 v~ivG~~~~GKSsLin~l~~~~~~~~~~---~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~ 251 (429)
T TIGR03594 175 IAIIGRPNVGKSTLVNALLGEERVIVSD---IAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKA 251 (429)
T ss_pred EEEECCCCCCHHHHHHHHHCCCeeecCC---CCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHH
Confidence 7899999999999999999998877763 578999887666655666899999999974433211 123333445678
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC-ChhchH---HHHHHHHHHH-hhcC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT-PLENLE---PVLREDIQKI-WDSV 155 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t-~~e~l~---~~l~~~l~~i-w~~i 155 (772)
+..+|++|+.+...+ | ....+..+++.+.+ ...|+++|+||+|+. +.+..+ +.+.+.+..+ +..+
T Consensus 252 ~~~ad~~ilV~D~~~-~-~~~~~~~~~~~~~~--------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 252 IERADVVLLVLDATE-G-ITEQDLRIAGLILE--------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHhCCEEEEEEECCC-C-ccHHHHHHHHHHHH--------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCce
Confidence 899999988776532 1 11122333444433 568999999999986 333332 2232222222 3457
Q ss_pred CCCCCccCCCchhhHHHHHhh
Q 004126 156 PKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~ 176 (772)
...||..+.+++++|+.....
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHH
Confidence 788999999999999886654
No 36
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.32 E-value=1.3e-11 Score=139.26 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=112.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|++|||||||+|+|.|.+.++++. .+.||++...+.....+..+.++||||..... . .....++..+..++
T Consensus 4 I~ivG~~~vGKStL~n~l~~~~~~~v~~---~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~-~-~~~~~~~~~~~~~~ 78 (435)
T PRK00093 4 VAIVGRPNVGKSTLFNRLTGKRDAIVAD---TPGVTRDRIYGEAEWLGREFILIDTGGIEPDD-D-GFEKQIREQAELAI 78 (435)
T ss_pred EEEECCCCCCHHHHHHHHhCCCceeeCC---CCCCcccceEEEEEECCcEEEEEECCCCCCcc-h-hHHHHHHHHHHHHH
Confidence 7899999999999999999999887763 57899999888877777899999999998411 1 11334556678889
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i~kpsa 160 (772)
..+|++|+.+...+ + .......+.+.+.+ .+.|+++|+||+|....+. .+. +...+ +..+.+.|+
T Consensus 79 ~~ad~il~vvd~~~-~-~~~~~~~~~~~l~~--------~~~piilv~NK~D~~~~~~---~~~-~~~~lg~~~~~~iSa 144 (435)
T PRK00093 79 EEADVILFVVDGRA-G-LTPADEEIAKILRK--------SNKPVILVVNKVDGPDEEA---DAY-EFYSLGLGEPYPISA 144 (435)
T ss_pred HhCCEEEEEEECCC-C-CCHHHHHHHHHHHH--------cCCcEEEEEECccCccchh---hHH-HHHhcCCCCCEEEEe
Confidence 99999988765432 1 11122223343333 4789999999999643221 111 11122 445677899
Q ss_pred ccCCCchhhHHHHHhhcC
Q 004126 161 HMETPLSEFFNVEVVALS 178 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lp 178 (772)
..+.++.++|+.....++
T Consensus 145 ~~g~gv~~l~~~I~~~~~ 162 (435)
T PRK00093 145 EHGRGIGDLLDAILEELP 162 (435)
T ss_pred eCCCCHHHHHHHHHhhCC
Confidence 999999999998877443
No 37
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.29 E-value=1.1e-11 Score=120.35 Aligned_cols=165 Identities=16% Similarity=0.072 Sum_probs=98.3
Q ss_pred EeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC-CCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhh
Q 004126 4 IFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI-EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALA 82 (772)
Q Consensus 4 IvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~-~~qil~lDteG~~s~er~e~~~~fe~k~alfALa 82 (772)
|+|++|||||||+|+|.|.++. ++ ..+.||++...+..... ..++.++||||....... . ... .......+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-~~---~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-~-~~~-~~~~~~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-VA---NYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE-G-RGL-GNQFLAHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-cc---CCCceeecCcceEEEcCCCCeEEEEeccccchhhhc-C-CCc-cHHHHHHHh
Confidence 6899999999999999999873 33 35778888888877666 789999999998521111 0 111 112233466
Q ss_pred cccEEEEeecccccc-----ccccCCHHHHHHHHHHH-HhhcC-CCCccEEEEEeCCCCCChhchHHHHHHHHHHHh-hc
Q 004126 83 VSDIVLINMWCHDIG-----REQAANKPLLKTVFQVM-MRLFS-PRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DS 154 (772)
Q Consensus 83 ~sDvliiNl~~~dig-----~~~~~n~~lLktv~evn-l~lf~-~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-~~ 154 (772)
.+|++++.+...+.- ....+-..+...+.... ..+|. ..+.|+++|+||.|..+.+.+...........+ ..
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE 153 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC
Confidence 799998877653321 00000001111111100 00011 036899999999998755544432111111112 23
Q ss_pred CCCCCCccCCCchhhHHHHHh
Q 004126 155 VPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~ 175 (772)
+...|+..+.+++++++....
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHh
Confidence 667788999999999887654
No 38
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.28 E-value=1.5e-11 Score=124.14 Aligned_cols=131 Identities=15% Similarity=0.056 Sum_probs=83.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCC-CccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGE-DDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e-~~~~fe~k~alfA 80 (772)
|+++|++|+|||||+|.|+|.+....+. ..+.+|+..-.+.......++.|+||||++...... .....+.+.+..+
T Consensus 3 i~lvG~~g~GKSsl~N~ilg~~~~~~~~--~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILGREVFESKL--SASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred EEEECCCCCCHHHHHHHhhCCCcccccc--CCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 7899999999999999999998765543 245677777666655567899999999998553211 0112233344455
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC-CCccEEEEEeCCCCCChhchH
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTPLENLE 141 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~-~k~~llfVIrd~d~t~~e~l~ 141 (772)
....|++|+.+. +++........++. ..++|++ ...+.++|+.++|....+.++
T Consensus 81 ~~g~~~illVi~---~~~~t~~d~~~l~~----l~~~fg~~~~~~~ivv~T~~d~l~~~~~~ 135 (196)
T cd01852 81 APGPHAFLLVVP---LGRFTEEEEQAVET----LQELFGEKVLDHTIVLFTRGDDLEGGTLE 135 (196)
T ss_pred CCCCEEEEEEEE---CCCcCHHHHHHHHH----HHHHhChHhHhcEEEEEECccccCCCcHH
Confidence 567898876554 44433333333333 3446765 235678888888754433333
No 39
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.28 E-value=6.3e-11 Score=113.73 Aligned_cols=155 Identities=8% Similarity=-0.012 Sum_probs=95.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|++|||||||+|+|+|.++..- ..+++|..........+ ..++.++||||.. .+ +.....
T Consensus 3 i~liG~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~---------~~-~~~~~~ 68 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDTFDNQ----YQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE---------RF-RSLIPS 68 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCcc----CCCceeeeEEEEEEEECCEEEEEEEEECCCcH---------HH-HHHHHH
Confidence 68999999999999999999999762 24666666555444333 3578999999942 11 223344
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc-hHHHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN-LEPVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~-l~~~l~~~l~~iw~~i~kp 158 (772)
-+..+|++++.....+.. ...-+...++...+.. ....|+++|+|++|...... ..+............+.+.
T Consensus 69 ~~~~~~~ii~v~d~~~~~-----s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQ-----SFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIET 142 (161)
T ss_pred HhccCCEEEEEEECcCHH-----HHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEE
Confidence 467889887654332211 1111222222111111 13589999999999842222 2222222222333456788
Q ss_pred CCccCCCchhhHHHHHhh
Q 004126 159 QAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~ 176 (772)
|+..+.+++++|+.....
T Consensus 143 Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 143 SAKAGHNVKELFRKIASA 160 (161)
T ss_pred eCCCCCCHHHHHHHHHHh
Confidence 999999999999987654
No 40
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.28 E-value=4.9e-11 Score=143.38 Aligned_cols=183 Identities=13% Similarity=0.035 Sum_probs=121.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|.||+|||||+|+|.|.+..+. +.+.||.....|.....+..+.++||||+++-.........+.+.+...+
T Consensus 6 IaLvG~pNvGKSTLfN~Ltg~~~~vg----n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 6 IGLIGNPNSGKTTLFNQLTGARQRVG----NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCccC----CCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 78999999999999999999988653 35889998888888877889999999999864321110122233333333
Q ss_pred --hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCC
Q 004126 82 --AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 159 (772)
Q Consensus 82 --a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kps 159 (772)
..+|++++.+...+.. .+..+...+.+ ...|+++|+||.|..........+.+.-+.+--.+.+.+
T Consensus 82 ~~~~aD~vI~VvDat~le----r~l~l~~ql~e--------~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiS 149 (772)
T PRK09554 82 LSGDADLLINVVDASNLE----RNLYLTLQLLE--------LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLV 149 (772)
T ss_pred hccCCCEEEEEecCCcch----hhHHHHHHHHH--------cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEE
Confidence 4789997666543321 22223333333 578999999999976443333222211122223577889
Q ss_pred CccCCCchhhHHHHHhhcCCC----ccchhHHHHHHHHHHhhhcc
Q 004126 160 AHMETPLSEFFNVEVVALSSF----EEKEELFKEQVASLRQRFYH 200 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~Lph~----~~~~~~F~~~v~~Lr~~f~~ 200 (772)
+.++.+++++.+......+.. ..-+++..+.++++++.+..
T Consensus 150 A~~g~GIdeL~~~I~~~~~~~~~~~~~yp~~le~~I~~l~~~L~e 194 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQANENVELVHYPQPLLNEADSLAKVMPS 194 (772)
T ss_pred eecCCCHHHHHHHHHHhhhccCCcccCCCHHHHHHHHHHHHHhhh
Confidence 999999999999887655321 11245677778888887754
No 41
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.26 E-value=9.5e-11 Score=112.24 Aligned_cols=153 Identities=17% Similarity=0.114 Sum_probs=93.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC-CCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI-EPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~-~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|+|.+|+|||||+|+|.|........ ...+.||.+.-....... ...+.++||||.. .|. .....+
T Consensus 3 i~i~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~---------~~~-~~~~~~ 71 (164)
T cd04171 3 IGTAGHIDHGKTTLIKALTGIETDRLPE-EKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE---------KFI-KNMLAG 71 (164)
T ss_pred EEEEecCCCCHHHHHHHHhCcccccchh-hhccCceEEeeeEEEEecCCcEEEEEECCChH---------HHH-HHHHhh
Confidence 7899999999999999999865443332 123456666544444333 5688999999963 232 234456
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHH---hhc
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKI---WDS 154 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~i---w~~ 154 (772)
+..+|++++.+...+ +... .....+..+ +.. ..+|+++|+||+|..+.+... +.+.+.+... ...
T Consensus 72 ~~~ad~ii~V~d~~~-~~~~-~~~~~~~~~-----~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04171 72 AGGIDLVLLVVAADE-GIMP-QTREHLEIL-----ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAP 142 (164)
T ss_pred hhcCCEEEEEEECCC-CccH-hHHHHHHHH-----HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 788999988776532 1111 111111211 111 235899999999986543222 2333333221 124
Q ss_pred CCCCCCccCCCchhhHHHHH
Q 004126 155 VPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~ 174 (772)
+.+.|+..+.+++++|+...
T Consensus 143 ~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 143 IFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred EEEEeCCCCcCHHHHHHHHh
Confidence 66778999999999988653
No 42
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.26 E-value=6.7e-11 Score=115.91 Aligned_cols=158 Identities=18% Similarity=0.113 Sum_probs=97.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCC------------CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAF------------KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDD 69 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~------------~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~ 69 (772)
|+|+|.+|+|||||+|+|.+..+...... ....++|...-..........+.|+||||...
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~------- 74 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED------- 74 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH-------
Confidence 79999999999999999999877642210 00122333322222223356899999999751
Q ss_pred cHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHH
Q 004126 70 TAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLRE 146 (772)
Q Consensus 70 ~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~ 146 (772)
+ ......++..+|++++.+...+.- .......+....+ ...|+++|+||.|..+.+.+. +.+.+
T Consensus 75 --~-~~~~~~~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~--------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~ 141 (189)
T cd00881 75 --F-SSEVIRGLSVSDGAILVVDANEGV--QPQTREHLRIARE--------GGLPIIVAINKIDRVGEEDLEEVLREIKE 141 (189)
T ss_pred --H-HHHHHHHHHhcCEEEEEEECCCCC--cHHHHHHHHHHHH--------CCCCeEEEEECCCCcchhcHHHHHHHHHH
Confidence 1 123445667899998866543211 0111111222211 578999999999987644443 22333
Q ss_pred HHHHH--------------hhcCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 147 DIQKI--------------WDSVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 147 ~l~~i--------------w~~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
.+..+ -..+.+.|+..+.+++++|+.....+|-
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 142 LLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred HHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 33221 1235677899999999999998888873
No 43
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.25 E-value=5.1e-11 Score=112.85 Aligned_cols=151 Identities=18% Similarity=0.095 Sum_probs=100.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|++|+|||||+|+|+|..+...+ +.+.||+.............+.++||||....... ............+
T Consensus 4 i~l~G~~~~GKstli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~~~~~~~~~ 78 (157)
T cd04164 4 VVIVGKPNVGKSSLLNALAGRDRAIVS---DIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE--IEKIGIERAREAI 78 (157)
T ss_pred EEEECCCCCCHHHHHHHHHCCceEecc---CCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch--HHHHHHHHHHHHH
Confidence 689999999999999999999987766 46788887766555555668899999998633321 1112222344556
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCc
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 161 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~ 161 (772)
..+|++++.+...+.. ...+..++.. ...+|+++|+||+|..+.+.. ........+...|+.
T Consensus 79 ~~~~~~v~v~d~~~~~--~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~~------~~~~~~~~~~~~Sa~ 140 (157)
T cd04164 79 EEADLVLFVIDASRGL--DEEDLEILEL----------PADKPIIVVLNKSDLLPDSEL------LSLLAGKPIIAISAK 140 (157)
T ss_pred hhCCEEEEEEECCCCC--CHHHHHHHHh----------hcCCCEEEEEEchhcCCcccc------ccccCCCceEEEECC
Confidence 7899998866554311 1112211111 257899999999998655443 111112346677888
Q ss_pred cCCCchhhHHHHHh
Q 004126 162 METPLSEFFNVEVV 175 (772)
Q Consensus 162 ~~~~l~dlf~~~~~ 175 (772)
++.++.++++.+..
T Consensus 141 ~~~~v~~l~~~l~~ 154 (157)
T cd04164 141 TGEGLDELKEALLE 154 (157)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999887544
No 44
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.25 E-value=3.6e-11 Score=132.78 Aligned_cols=156 Identities=16% Similarity=0.077 Sum_probs=100.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC-CCCcEEEEecCCCCCc-CCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG-IEPCTLIMDLEGTDGR-ERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~-~~~qil~lDteG~~s~-er~e~~~~fe~k~alf 79 (772)
|+|+|.||+|||||||+|.|.++.+ + ..+-||++........ ...++.++||+|+... +.. ....| +.++.
T Consensus 192 ValvG~~NvGKSSLln~L~~~~~~v-~---~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~-lie~f--~~tle 264 (351)
T TIGR03156 192 VALVGYTNAGKSTLFNALTGADVYA-A---DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHE-LVAAF--RATLE 264 (351)
T ss_pred EEEECCCCCCHHHHHHHHhCCceee-c---cCCccccCCEEEEEEeCCCceEEEEecCcccccCCHH-HHHHH--HHHHH
Confidence 7999999999999999999998543 3 3567888887766665 3568999999999522 211 11223 33556
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 159 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kps 159 (772)
.+..||++|+.+...+.. ...-++.+.++ +.-.....+|+++|+||+|..+.+.+.. .... ...+...|
T Consensus 265 ~~~~ADlil~VvD~s~~~-----~~~~~~~~~~~-L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~~-~~~~i~iS 333 (351)
T TIGR03156 265 EVREADLLLHVVDASDPD-----REEQIEAVEKV-LEELGAEDIPQLLVYNKIDLLDEPRIER----LEEG-YPEAVFVS 333 (351)
T ss_pred HHHhCCEEEEEEECCCCc-----hHHHHHHHHHH-HHHhccCCCCEEEEEEeecCCChHhHHH----HHhC-CCCEEEEE
Confidence 788999998877653322 11112222221 1111224679999999999875443321 1111 11256689
Q ss_pred CccCCCchhhHHHHHh
Q 004126 160 AHMETPLSEFFNVEVV 175 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~ 175 (772)
+.++.+++++++.+..
T Consensus 334 Aktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 334 AKTGEGLDLLLEAIAE 349 (351)
T ss_pred ccCCCCHHHHHHHHHh
Confidence 9999999999987654
No 45
>PRK04213 GTP-binding protein; Provisional
Probab=99.24 E-value=8.1e-11 Score=118.32 Aligned_cols=162 Identities=12% Similarity=0.045 Sum_probs=95.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCC--ccHHHHHHH--
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGED--DTAFEKQSA-- 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~--~~~fe~k~a-- 77 (772)
|+|+|++|+|||||+|+|+|..+.+ + ..++||+....... .++.++||||+...+.... ...+.....
T Consensus 12 i~i~G~~~~GKSsLin~l~~~~~~~-~---~~~~~t~~~~~~~~----~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 12 IVFVGRSNVGKSTLVRELTGKKVRV-G---KRPGVTRKPNHYDW----GDFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcc-C---CCCceeeCceEEee----cceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 7899999999999999999998763 2 35688887654322 2689999999742221100 012211111
Q ss_pred -HHHhhcccEEEEeeccccc----cccccC-----CHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh-chHHHHHH
Q 004126 78 -LFALAVSDIVLINMWCHDI----GREQAA-----NKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLRE 146 (772)
Q Consensus 78 -lfALa~sDvliiNl~~~di----g~~~~~-----n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e-~l~~~l~~ 146 (772)
...+..+|++++.+...+. .++... ...+++.+.. ...|+++|+||+|+.+.+ ...+.+.+
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~p~iiv~NK~Dl~~~~~~~~~~~~~ 155 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--------LGIPPIVAVNKMDKIKNRDEVLDEIAE 155 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--------cCCCeEEEEECccccCcHHHHHHHHHH
Confidence 1134556777665544221 111100 1112232222 568999999999986433 11122222
Q ss_pred HHHH--Hh----hcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 147 DIQK--IW----DSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 147 ~l~~--iw----~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
.+.. -| ..+.+.|+..+ +++++|+.....++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 2221 11 12567899999 9999999988877654
No 46
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.21 E-value=6.9e-11 Score=119.27 Aligned_cols=159 Identities=19% Similarity=0.127 Sum_probs=96.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCC-cEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEP-CTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~-qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|+|++|||||||+|.|.|..+.+. +.+.+|.+...+.....+. ++.|+||||.......+....+ ...+-.
T Consensus 44 I~iiG~~g~GKStLl~~l~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--~~~~~~ 117 (204)
T cd01878 44 VALVGYTNAGKSTLFNALTGADVYAE----DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAF--RSTLEE 117 (204)
T ss_pred EEEECCCCCCHHHHHHHHhcchhccC----CccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHH--HHHHHH
Confidence 78999999999999999999886542 2456676666655554444 8999999998522111100111 223344
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa 160 (772)
+..+|++++.+...+.. ...+ +..+.+ .++.......|+++|+||.|..+..... +.....-..+...|+
T Consensus 118 ~~~~d~ii~v~D~~~~~--~~~~---~~~~~~-~l~~~~~~~~~viiV~NK~Dl~~~~~~~----~~~~~~~~~~~~~Sa 187 (204)
T cd01878 118 VAEADLLLHVVDASDPD--YEEQ---IETVEK-VLKELGAEDIPMILVLNKIDLLDDEELE----ERLEAGRPDAVFISA 187 (204)
T ss_pred HhcCCeEEEEEECCCCC--hhhH---HHHHHH-HHHHcCcCCCCEEEEEEccccCChHHHH----HHhhcCCCceEEEEc
Confidence 66899998766543221 0011 111111 1111222468999999999986554333 111111223667899
Q ss_pred ccCCCchhhHHHHHhh
Q 004126 161 HMETPLSEFFNVEVVA 176 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~ 176 (772)
..+.++.++|+.....
T Consensus 188 ~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 188 KTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999876554
No 47
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.20 E-value=1.4e-10 Score=131.82 Aligned_cols=119 Identities=15% Similarity=0.101 Sum_probs=82.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|+||+|||||+|+|+|..+++++. .+.||+....+.....+.++.++||||....... ...+....+...+
T Consensus 206 VvIvG~~nvGKSSLiN~L~~~~~aivs~---~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~--ie~~gi~~~~~~~ 280 (442)
T TIGR00450 206 LAIVGSPNVGKSSLLNALLKQDRAIVSD---IKGTTRDVVEGDFELNGILIKLLDTAGIREHADF--VERLGIEKSFKAI 280 (442)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCcccCC---CCCcEEEEEEEEEEECCEEEEEeeCCCcccchhH--HHHHHHHHHHHHH
Confidence 7899999999999999999998888774 6889999888777777778999999999622110 0112223456678
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
..+|++++.+...+ .......++..+. ...+|+++|+||.|+.+
T Consensus 281 ~~aD~il~V~D~s~---~~s~~~~~l~~~~--------~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 281 KQADLVIYVLDASQ---PLTKDDFLIIDLN--------KSKKPFILVLNKIDLKI 324 (442)
T ss_pred hhCCEEEEEEECCC---CCChhHHHHHHHh--------hCCCCEEEEEECccCCC
Confidence 89999987665432 1111111222221 24679999999999854
No 48
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.20 E-value=2.2e-10 Score=113.66 Aligned_cols=149 Identities=16% Similarity=0.097 Sum_probs=86.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCe-eeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCc-cHHHHH--HH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNF-REMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDD-TAFEKQ--SA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkf-sims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~-~~fe~k--~a 77 (772)
|.|+|.+|+|||||+|+|+|..+ ..++ +.+.||+++-..... .++.++||||.....-.... ..+... ..
T Consensus 21 i~ivG~~~~GKStlin~l~~~~~~~~~~---~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 21 IAFAGRSNVGKSSLINALTNRKKLARTS---KTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccc---CCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 68999999999999999999873 4444 356688887655442 47999999997632211110 111111 11
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHH-hh
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKI-WD 153 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~i-w~ 153 (772)
+-....+|++++.+...+ + ....+..+++.+. ..+.|+++|+||+|..+.+... +.+.+.+... |.
T Consensus 95 l~~~~~~~~ii~vvd~~~-~-~~~~~~~~~~~~~--------~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~ 164 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRH-P-LKELDLEMLEWLR--------ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD 164 (179)
T ss_pred HHhChhhcEEEEEecCCC-C-CCHHHHHHHHHHH--------HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence 111123567766554322 1 1112222223222 2578899999999986544333 3334444332 21
Q ss_pred -cCCCCCCccCCCc
Q 004126 154 -SVPKPQAHMETPL 166 (772)
Q Consensus 154 -~i~kpsa~~~~~l 166 (772)
.+.+.|++.+.++
T Consensus 165 ~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 165 PSVQLFSSLKKTGI 178 (179)
T ss_pred CceEEEECCCCCCC
Confidence 5778888888775
No 49
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.20 E-value=2.1e-10 Score=114.16 Aligned_cols=159 Identities=12% Similarity=0.006 Sum_probs=93.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCe-eeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNF-REMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkf-sims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|+|.+|+|||||+|+|+|.+| ...+ +.+.||+.+-.... +.++.++||||.......+.............
T Consensus 27 v~ivG~~~~GKSsli~~l~~~~~~~~~~---~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 27 IAFAGRSNVGKSSLINALTNRKNLARTS---KTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCccccc---CCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 78999999999999999999864 3333 45778887644322 47899999999763221111011112222222
Q ss_pred hhc---ccEEEEeeccccccccc-cCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHHhh
Q 004126 81 LAV---SDIVLINMWCHDIGREQ-AANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKIWD 153 (772)
Q Consensus 81 La~---sDvliiNl~~~dig~~~-~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~iw~ 153 (772)
+.. ++++++.+. .+... .....+++.+.. ...|+++|+||+|..+....+ ..+.+.+.....
T Consensus 101 ~~~~~~~~~~~~v~d---~~~~~~~~~~~i~~~l~~--------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~ 169 (196)
T PRK00454 101 LRTRENLKGVVLLID---SRHPLKELDLQMIEWLKE--------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD 169 (196)
T ss_pred HHhCccceEEEEEEe---cCCCCCHHHHHHHHHHHH--------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 333 344544332 22111 111122222221 467899999999986544333 223333333233
Q ss_pred cCCCCCCccCCCchhhHHHHHhhc
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
.+.+.|++.+.++.++|+.....+
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 577889999999999999876554
No 50
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.20 E-value=1.8e-10 Score=111.24 Aligned_cols=151 Identities=15% Similarity=0.188 Sum_probs=94.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC---CCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG---IEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~---~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
.|+|+|.+|+|||||+|+|.+..+.... .+.+|.++-...... ....+.++||||.. .|. ...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~---------~~~-~~~ 67 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGE----AGGITQHIGAFEVPAEVLKIPGITFIDTPGHE---------AFT-NMR 67 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccccc----CCCeEEeeccEEEecccCCcceEEEEeCCCcH---------HHH-HHH
Confidence 3789999999999999999999887643 345666654444433 25689999999963 111 122
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh--hchHHHHHHHHHH---Hh
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL--ENLEPVLREDIQK---IW 152 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~--e~l~~~l~~~l~~---iw 152 (772)
...+..+|++++.+...+.- .......++.+.. ...|+++|+||+|.... +.+...+.+.... .|
T Consensus 68 ~~~~~~~d~il~v~d~~~~~--~~~~~~~~~~~~~--------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 137 (168)
T cd01887 68 ARGASLTDIAILVVAADDGV--MPQTIEAIKLAKA--------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEW 137 (168)
T ss_pred HHHHhhcCEEEEEEECCCCc--cHHHHHHHHHHHH--------cCCCEEEEEEceecccccHHHHHHHHHHhhccccccc
Confidence 34567899998877553210 1112222333222 56789999999997532 2333333222111 12
Q ss_pred ---hcCCCCCCccCCCchhhHHHHHh
Q 004126 153 ---DSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 153 ---~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
-.+.+.|+..+.++.++|+....
T Consensus 138 ~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T cd01887 138 GGDVQIVPTSAKTGEGIDDLLEAILL 163 (168)
T ss_pred cCcCcEEEeecccCCCHHHHHHHHHH
Confidence 13667789999999999987654
No 51
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.19 E-value=1.9e-10 Score=107.23 Aligned_cols=156 Identities=19% Similarity=0.116 Sum_probs=98.8
Q ss_pred EeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC-CCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhh
Q 004126 4 IFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI-EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALA 82 (772)
Q Consensus 4 IvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~-~~qil~lDteG~~s~er~e~~~~fe~k~alfALa 82 (772)
|+|+++||||||+|+|+|..+...+ +.+.||........... ...+.++||||....... .......+...+.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~---~~~~~~~~~~~~~ 74 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS---PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGL---GREREELARRVLE 74 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC---CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccc---hhhHHHHHHHHHH
Confidence 6899999999999999999887544 34566776665554433 679999999999854432 2222345566778
Q ss_pred cccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHH---HHHHHHh-hcCCCC
Q 004126 83 VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR---EDIQKIW-DSVPKP 158 (772)
Q Consensus 83 ~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~---~~l~~iw-~~i~kp 158 (772)
.+|++++.+...+.. ...... ++ ..+...+.|+++|+||.|..+.+....... ......+ ..+...
T Consensus 75 ~~d~il~v~~~~~~~-----~~~~~~-~~----~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (163)
T cd00880 75 RADLILFVVDADLRA-----DEEEEK-LL----ELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAV 144 (163)
T ss_pred hCCEEEEEEeCCCCC-----CHHHHH-HH----HHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEE
Confidence 899998766543321 111111 01 111126788999999999877665554321 1111111 235566
Q ss_pred CCccCCCchhhHHHHHh
Q 004126 159 QAHMETPLSEFFNVEVV 175 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~ 175 (772)
++.++.++.++++....
T Consensus 145 sa~~~~~v~~l~~~l~~ 161 (163)
T cd00880 145 SALTGEGIDELREALIE 161 (163)
T ss_pred eeeccCCHHHHHHHHHh
Confidence 78888888888876544
No 52
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.18 E-value=1.9e-10 Score=111.30 Aligned_cols=158 Identities=15% Similarity=0.047 Sum_probs=95.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|++|+|||||+|+|.+.....-.....+..+|.++-.+.....+..+.++||||... + .......+
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~---------~-~~~~~~~~ 71 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQES---------L-RSLWDKYY 71 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChh---------h-HHHHHHHh
Confidence 6899999999999999998754321111113457788877776666678999999999751 1 12233457
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh---chHHHHHHHHHHHh---hcC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE---NLEPVLREDIQKIW---DSV 155 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e---~l~~~l~~~l~~iw---~~i 155 (772)
..+|++++.+...+.. ...-.+..+...++.....+.|+++|+||+|..+.. .+.+.+......++ ..+
T Consensus 72 ~~~~~~v~vvd~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (167)
T cd04160 72 AECHAIIYVIDSTDRE-----RFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLV 146 (167)
T ss_pred CCCCEEEEEEECchHH-----HHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEE
Confidence 8899988866543321 111111111111111112478999999999975432 22222222111111 147
Q ss_pred CCCCCccCCCchhhHHHHH
Q 004126 156 PKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~ 174 (772)
.+.|+.++.+++++|+...
T Consensus 147 ~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 147 LPVSALEGTGVREGIEWLV 165 (167)
T ss_pred EEeeCCCCcCHHHHHHHHh
Confidence 7889999999999987654
No 53
>PRK11058 GTPase HflX; Provisional
Probab=99.14 E-value=1.7e-10 Score=130.59 Aligned_cols=163 Identities=16% Similarity=0.106 Sum_probs=100.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC-CcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE-PCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~-~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|+|.||+|||||||+|.|.++.+.+ .+-||++.........+ ..++++||+|+....-...-..| ..++..
T Consensus 200 ValVG~~NaGKSSLlN~Lt~~~~~v~~----~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f--~~tl~~ 273 (426)
T PRK11058 200 VSLVGYTNAGKSTLFNRITEARVYAAD----QLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAF--KATLQE 273 (426)
T ss_pred EEEECCCCCCHHHHHHHHhCCceeecc----CCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHH--HHHHHH
Confidence 799999999999999999999988544 45577777665554443 48899999999532111111123 234666
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa 160 (772)
+..||++|+.+...+.. ...-+..+.++...+ .....|+++|+||+|+.+... ..+....... ..+...|+
T Consensus 274 ~~~ADlIL~VvDaS~~~-----~~e~l~~v~~iL~el-~~~~~pvIiV~NKiDL~~~~~--~~~~~~~~~~-~~~v~ISA 344 (426)
T PRK11058 274 TRQATLLLHVVDAADVR-----VQENIEAVNTVLEEI-DAHEIPTLLVMNKIDMLDDFE--PRIDRDEENK-PIRVWLSA 344 (426)
T ss_pred hhcCCEEEEEEeCCCcc-----HHHHHHHHHHHHHHh-ccCCCCEEEEEEcccCCCchh--HHHHHHhcCC-CceEEEeC
Confidence 78999998766543321 111122222211111 224689999999999864211 1111110000 01245799
Q ss_pred ccCCCchhhHHHHHhhcCC
Q 004126 161 HMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lph 179 (772)
.++.+++++++.....+++
T Consensus 345 ktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 345 QTGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCCCHHHHHHHHHHHhhh
Confidence 9999999999998877754
No 54
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.13 E-value=1.5e-10 Score=108.00 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=92.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|.++||||||+|+|++..+.. . ..+.+|++.+........ ..+.++||||.. ..... .....+.+..
T Consensus 4 i~~~G~~~~GKstl~~~l~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--~~~~~-~~~~~~~~~~ 76 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLNRLLGNKFIT-E---YKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE--DYRAI-RRLYYRAVES 76 (161)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcC-c---CCCCceeeeeEEEEEECCEEEEEEEEECCCcc--cchHH-HHHHHhhhhE
Confidence 7899999999999999999998432 2 356888888887665555 678999999943 11111 2222233333
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i~kp 158 (772)
.+...|+++... +.. . .....+..+.. .. ....|+++|+||.|..... +.......+..+ ...+.+.
T Consensus 77 ~i~~~d~~~~v~---~~~--~-~~~~~~~~~~~----~~-~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~ 144 (161)
T TIGR00231 77 SLRVFDIVILVL---DVE--E-ILEKQTKEIIH----HA-ESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPL 144 (161)
T ss_pred EEEEEEEeeeeh---hhh--h-HhHHHHHHHHH----hc-ccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEe
Confidence 344444443211 111 0 00112222222 11 1267899999999986533 333344444444 3356778
Q ss_pred CCccCCCchhhHHHH
Q 004126 159 QAHMETPLSEFFNVE 173 (772)
Q Consensus 159 sa~~~~~l~dlf~~~ 173 (772)
++..+.++.++|+..
T Consensus 145 sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 145 SAETGKNIDSAFKIV 159 (161)
T ss_pred ecCCCCCHHHHHHHh
Confidence 899999999998864
No 55
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.13 E-value=4.2e-10 Score=112.78 Aligned_cols=157 Identities=20% Similarity=0.196 Sum_probs=102.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeee------------ecCC--CCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFRE------------MDAF--KGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRER 65 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsi------------ms~~--~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er 65 (772)
|+|+|..++|||||+++|.+..-.+ ++.. ....+.|-........ .....+.|+||||-
T Consensus 6 I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~----- 80 (188)
T PF00009_consen 6 IAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH----- 80 (188)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS-----
T ss_pred EEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc-----
Confidence 7899999999999999999754221 1100 0112344444444444 55679999999994
Q ss_pred CCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHH
Q 004126 66 GEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 145 (772)
Q Consensus 66 ~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~ 145 (772)
.+|.. ....++..+|++|+.+...+-- .......++.+.+ .+.|+++|+||+|.. ...+++.+.
T Consensus 81 ----~~f~~-~~~~~~~~~D~ailvVda~~g~--~~~~~~~l~~~~~--------~~~p~ivvlNK~D~~-~~~~~~~~~ 144 (188)
T PF00009_consen 81 ----EDFIK-EMIRGLRQADIAILVVDANDGI--QPQTEEHLKILRE--------LGIPIIVVLNKMDLI-EKELEEIIE 144 (188)
T ss_dssp ----HHHHH-HHHHHHTTSSEEEEEEETTTBS--THHHHHHHHHHHH--------TT-SEEEEEETCTSS-HHHHHHHHH
T ss_pred ----cceee-cccceecccccceeeeeccccc--ccccccccccccc--------cccceEEeeeeccch-hhhHHHHHH
Confidence 24543 4567799999999888764311 1223334454444 677899999999988 444443333
Q ss_pred HHHHHH-----hh-----cCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 146 EDIQKI-----WD-----SVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 146 ~~l~~i-----w~-----~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
+..+.+ +. .+.+.|+..+.++.+|++.....+|.
T Consensus 145 ~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 145 EIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLPS 188 (188)
T ss_dssp HHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS--
T ss_pred HHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCcC
Confidence 322223 22 27788999999999999999999984
No 56
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.12 E-value=9.5e-10 Score=105.70 Aligned_cols=155 Identities=14% Similarity=0.064 Sum_probs=94.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|+|.+|+|||||+|++.+..|. + ....|++........... .++.++||||.. +. .. ....
T Consensus 5 i~i~G~~~~GKtsl~~~~~~~~~~--~---~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~---~~---~~----~~~~ 69 (164)
T cd04145 5 LVVVGGGGVGKSALTIQFIQSYFV--T---DYDPTIEDSYTKQCEIDGQWAILDILDTAGQE---EF---SA----MREQ 69 (164)
T ss_pred EEEECCCCCcHHHHHHHHHhCCCC--c---ccCCCccceEEEEEEECCEEEEEEEEECCCCc---ch---hH----HHHH
Confidence 689999999999999999998774 2 345666665554433332 467889999964 11 11 2223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++++.+...+.. ...-+....+...+.....+.|+++|+||+|+.+...+. ....+......-.+.+.
T Consensus 70 ~~~~~~~~ilv~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (164)
T cd04145 70 YMRTGEGFLLVFSVTDRG-----SFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIET 144 (164)
T ss_pred HHhhCCEEEEEEECCCHH-----HHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEe
Confidence 456788887766544322 111222222222333334578999999999976443222 12222222222246788
Q ss_pred CCccCCCchhhHHHHHhh
Q 004126 159 QAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~ 176 (772)
|+..+.++.++|+.....
T Consensus 145 Sa~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 145 SAKDRLNVDKAFHDLVRV 162 (164)
T ss_pred eCCCCCCHHHHHHHHHHh
Confidence 999999999999876543
No 57
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.11 E-value=1.1e-09 Score=105.42 Aligned_cols=158 Identities=14% Similarity=-0.014 Sum_probs=90.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|++|+|||||+|+|.+..+..... +...++..+-.-.......++.++||||... + .......+
T Consensus 3 i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~-~~~~~~~~ 70 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDDTFDPDLA--ATIGVDFKVKTLTVDGKKVKLAIWDTAGQER---------F-RTLTSSYY 70 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCcccC--CcccceEEEEEEEECCEEEEEEEEECCCchh---------h-hhhhHHHh
Confidence 6899999999999999999998865321 1222221111111222345789999999531 1 11122335
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCc
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 161 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~ 161 (772)
..+|++++.....+... ..-+...++...+.......|+++|+||.|....+...+...+.....--.+.+.|+.
T Consensus 71 ~~~d~~i~v~d~~~~~s-----~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd01863 71 RGAQGVILVYDVTRRDT-----FTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAK 145 (161)
T ss_pred CCCCEEEEEEECCCHHH-----HHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecC
Confidence 68999987654433221 1112112221112222357889999999997633322222222222222236778999
Q ss_pred cCCCchhhHHHHHhh
Q 004126 162 METPLSEFFNVEVVA 176 (772)
Q Consensus 162 ~~~~l~dlf~~~~~~ 176 (772)
++.+++++|+.....
T Consensus 146 ~~~gi~~~~~~~~~~ 160 (161)
T cd01863 146 TRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999876654
No 58
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.11 E-value=4.5e-10 Score=110.08 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=90.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeee---------ecCC--------CCCCCCcccceeeEecCCCCcEEEEecCCCCCcC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFRE---------MDAF--------KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRE 64 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsi---------ms~~--------~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~e 64 (772)
|+++|.+++|||||+|+|.+..-.+ ++.. ....++++-.|.++ .....++.|+||||.+.
T Consensus 3 i~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-- 79 (179)
T cd01890 3 FSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-DGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred EEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-CCCcEEEEEEECCCChh--
Confidence 7899999999999999999843111 1100 01122222222211 33456788999999861
Q ss_pred CCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh--chHH
Q 004126 65 RGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE--NLEP 142 (772)
Q Consensus 65 r~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e--~l~~ 142 (772)
| ......++..+|++|+.+...+ +. .......+....+ .+.|+++|+||+|+.+.. ...+
T Consensus 80 -------~-~~~~~~~~~~ad~~i~v~D~~~-~~-~~~~~~~~~~~~~--------~~~~iiiv~NK~Dl~~~~~~~~~~ 141 (179)
T cd01890 80 -------F-SYEVSRSLAACEGALLLVDATQ-GV-EAQTLANFYLALE--------NNLEIIPVINKIDLPSADPERVKQ 141 (179)
T ss_pred -------h-HHHHHHHHHhcCeEEEEEECCC-Cc-cHhhHHHHHHHHH--------cCCCEEEEEECCCCCcCCHHHHHH
Confidence 1 1233445778999988665432 10 1111112222211 467899999999975422 1112
Q ss_pred HHHHHHHHHhhcCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 143 VLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 143 ~l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
.+.+.+..-+..+.+.|+..+.+++++|+.....+|-
T Consensus 142 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (179)
T cd01890 142 QIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred HHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCCC
Confidence 2222221001236688999999999999998877763
No 59
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.11 E-value=1.1e-09 Score=111.34 Aligned_cols=163 Identities=11% Similarity=0.110 Sum_probs=97.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEe--cCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC--AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~--~~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|+|.+|||||||+|++.+.+|... ..|.++..+..-.. ......+.++||||....+-.. .+++.. ....
T Consensus 3 I~ivG~~~vGKTsLi~~~~~~~f~~~----~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~-~~e~~~-~~~~ 76 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLAQEFPEE----YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTA-GQEWMD-PRFR 76 (198)
T ss_pred EEEECCCCCcHHHHHHHHHcCCCCcc----cCCccccccceeEEEECCEEEEEEEEeCCCcccCCccc-hhHHHH-HHHh
Confidence 78999999999999999999888642 23444434332111 2222467799999986433221 133332 3455
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhc--CCCCccEEEEEeCCCCCChhchHH-HHHHHHHHHhh-cC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF--SPRKTTLMFVIRDKTRTPLENLEP-VLREDIQKIWD-SV 155 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf--~~~k~~llfVIrd~d~t~~e~l~~-~l~~~l~~iw~-~i 155 (772)
++..+|++|+.....+. ..+..++...+..++.. ...+.|+++|.||.|+........ .+.+...+.|. .+
T Consensus 77 ~~~~ad~iilv~D~~~~-----~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
T cd04142 77 GLRNSRAFILVYDICSP-----DSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGY 151 (198)
T ss_pred hhccCCEEEEEEECCCH-----HHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcE
Confidence 67899999876644321 11222232222222222 135689999999999854332222 22222222343 34
Q ss_pred CCCCCccCCCchhhHHHHHh
Q 004126 156 PKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~ 175 (772)
.+.|+..+.+++++|+....
T Consensus 152 ~e~Sak~g~~v~~lf~~i~~ 171 (198)
T cd04142 152 LECSAKYNWHILLLFKELLI 171 (198)
T ss_pred EEecCCCCCCHHHHHHHHHH
Confidence 67899999999999987664
No 60
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.11 E-value=4.5e-10 Score=105.73 Aligned_cols=148 Identities=11% Similarity=0.046 Sum_probs=92.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccc----eeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGI----WMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGi----w~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.++|+++||||||+|+|++.++... .++|-+. ..-........+.++|+||.. .+ +...
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~-~~~~ 66 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGKFDEN------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE---------RF-RSIT 66 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCCc------cCCceeeeeEEEEEEECCEEEEEEEEecCChH---------HH-HHHH
Confidence 68999999999999999999998754 2233332 222222234578899999963 11 2345
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCC-ChhchHHHHHHHHHHHhh
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRT-PLENLEPVLREDIQKIWD 153 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t-~~e~l~~~l~~~l~~iw~ 153 (772)
...++.+|++++.+...+.. -+..+.+ .+..+.. ...|+++|++|.|.. +.+...+.+.+.....--
T Consensus 67 ~~~~~~~d~ii~v~d~~~~~--------~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 137 (159)
T cd00154 67 PSYYRGAHGAILVYDITNRE--------SFENLDK-WLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGL 137 (159)
T ss_pred HHHhcCCCEEEEEEECCCHH--------HHHHHHH-HHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCC
Confidence 66678899998766543311 1222222 1212211 358999999999985 444444444433333223
Q ss_pred cCCCCCCccCCCchhhHHHHH
Q 004126 154 SVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~ 174 (772)
.+...++..+.++.++|+...
T Consensus 138 ~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 138 LFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred eEEEEecCCCCCHHHHHHHHh
Confidence 466778888899999988653
No 61
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.09 E-value=9.3e-10 Score=111.55 Aligned_cols=159 Identities=17% Similarity=0.108 Sum_probs=93.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeee-ecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFRE-MDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsi-ms~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|+|++|+|||||+|+|+|..+.. .+...+..+||+.+-. .......++.++||||+...... ...++++ ..
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~l~l~DtpG~~~~~~~--~~~~l~~---~~ 77 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP-YPHPKFPNVTLWDLPGIGSTAFP--PDDYLEE---MK 77 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee-eecCCCCCceEEeCCCCCcccCC--HHHHHHH---hC
Confidence 6899999999999999999965532 2222233455654321 11112357899999999744332 2345443 44
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC-Chh-----------chHHHHHHHH
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT-PLE-----------NLEPVLREDI 148 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t-~~e-----------~l~~~l~~~l 148 (772)
+..+|++|+.. -++.......+++.+.+ ...++++|+||+|.. +.+ .+.+.+.+.+
T Consensus 78 ~~~~d~~l~v~----~~~~~~~d~~~~~~l~~--------~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~ 145 (197)
T cd04104 78 FSEYDFFIIIS----STRFSSNDVKLAKAIQC--------MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC 145 (197)
T ss_pred ccCcCEEEEEe----CCCCCHHHHHHHHHHHH--------hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHH
Confidence 67889887642 12333444455666665 467899999999873 222 2223333333
Q ss_pred HHHhh-------cCCCCCCc--cCCCchhhHHHHHhhcC
Q 004126 149 QKIWD-------SVPKPQAH--METPLSEFFNVEVVALS 178 (772)
Q Consensus 149 ~~iw~-------~i~kpsa~--~~~~l~dlf~~~~~~Lp 178 (772)
..... .|...|+. .+.++..|.+.....||
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 32221 12222444 45677777777777777
No 62
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.09 E-value=8.6e-10 Score=115.16 Aligned_cols=160 Identities=16% Similarity=0.086 Sum_probs=103.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|.||+|||||+|+|.|.+..+. ..+-||.....|.....+.++-++||||+...... . ..+. ...+..+
T Consensus 3 v~lvG~~~~GKStLl~~Ltg~~~~v~----~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~-~-~~~~-~~~l~~~ 75 (233)
T cd01896 3 VALVGFPSVGKSTLLSKLTNTKSEVA----AYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD-G-KGRG-RQVIAVA 75 (233)
T ss_pred EEEECCCCCCHHHHHHHHHCCCcccc----CCCCccccceEEEEEECCeEEEEEECCCccccccc-c-hhHH-HHHHHhh
Confidence 78999999999999999999875542 35779998888887777788999999998632211 1 1222 2345677
Q ss_pred hcccEEEEeeccccccccccCCHHHH-----------------------------------------HHHHHHHHh----
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLL-----------------------------------------KTVFQVMMR---- 116 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lL-----------------------------------------ktv~evnl~---- 116 (772)
..+|++++.+...+..+ ....+ ++|..+.-+
T Consensus 76 ~~ad~il~V~D~t~~~~----~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~ 151 (233)
T cd01896 76 RTADLILMVLDATKPEG----HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIH 151 (233)
T ss_pred ccCCEEEEEecCCcchh----HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCee
Confidence 89999887665432110 01111 122111100
Q ss_pred ------------------hcCC-CCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCccCCCchhhHHHHHhhc
Q 004126 117 ------------------LFSP-RKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 117 ------------------lf~~-~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
+|+. ...|+++|.||+|+.+.+.+.. + .... .+...|+..+.+++++|+..+..|
T Consensus 152 ~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~-~----~~~~-~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 152 NADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL-L----ARQP-NSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH-H----hcCC-CEEEEcCCCCCCHHHHHHHHHHHh
Confidence 1221 2468899999999876655442 1 1111 245678999999999999887765
Q ss_pred C
Q 004126 178 S 178 (772)
Q Consensus 178 p 178 (772)
-
T Consensus 226 ~ 226 (233)
T cd01896 226 G 226 (233)
T ss_pred C
Confidence 3
No 63
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.08 E-value=7.8e-10 Score=110.49 Aligned_cols=148 Identities=14% Similarity=-0.005 Sum_probs=96.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|.+|+|||||+|+|.|.+|.. .++|.+.-.+.......++.++||||.+.. +......+
T Consensus 20 i~ivG~~~~GKTsli~~l~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~----------~~~~~~~~ 82 (184)
T smart00178 20 ILFLGLDNAGKTTLLHMLKNDRLAQ-------HQPTQHPTSEELAIGNIKFTTFDLGGHQQA----------RRLWKDYF 82 (184)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc-------cCCccccceEEEEECCEEEEEEECCCCHHH----------HHHHHHHh
Confidence 7899999999999999999988764 356666665555555678999999997521 11222456
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCC---ChhchHHHHHHHH-------
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRT---PLENLEPVLREDI------- 148 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t---~~e~l~~~l~~~l------- 148 (772)
..+|++|+.+...+..+ +....+...+++.. ..+|+++|+||.|.. +.+.+.+.+.-.-
T Consensus 83 ~~ad~ii~vvD~~~~~~--------~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~ 154 (184)
T smart00178 83 PEVNGIVYLVDAYDKER--------FAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGK 154 (184)
T ss_pred CCCCEEEEEEECCcHHH--------HHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccc
Confidence 78999988776543221 11111111122221 468999999999963 4444544432100
Q ss_pred --HHHhhcCCCCCCccCCCchhhHHHHHh
Q 004126 149 --QKIWDSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 149 --~~iw~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
.+.|. +.+.|+.++.++++.++-...
T Consensus 155 ~~~~~~~-i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 155 VGVRPLE-VFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cCCceeE-EEEeecccCCChHHHHHHHHh
Confidence 02343 888899999999999987643
No 64
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.08 E-value=1.5e-09 Score=110.47 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=93.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCC----------eeeecCC--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN----------FREMDAF--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDD 69 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk----------fsims~~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~ 69 (772)
|+|+|..++|||||+|+|++.. ..+++.. .....+|.+.-.........++.|+||||..
T Consensus 5 i~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-------- 76 (195)
T cd01884 5 VGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA-------- 76 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH--------
Confidence 7899999999999999998751 1122211 1134455555444444567899999999974
Q ss_pred cHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCc-cEEEEEeCCCCCChhchH----HHH
Q 004126 70 TAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKT-TLMFVIRDKTRTPLENLE----PVL 144 (772)
Q Consensus 70 ~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~-~llfVIrd~d~t~~e~l~----~~l 144 (772)
+| .+.+..+++.+|++++.+.... |- ......++..+.+ ... ++++|+||+|+.+.+... +.+
T Consensus 77 -~~-~~~~~~~~~~~D~~ilVvda~~-g~-~~~~~~~~~~~~~--------~~~~~iIvviNK~D~~~~~~~~~~~~~~i 144 (195)
T cd01884 77 -DY-IKNMITGAAQMDGAILVVSATD-GP-MPQTREHLLLARQ--------VGVPYIVVFLNKADMVDDEELLELVEMEV 144 (195)
T ss_pred -HH-HHHHHHHhhhCCEEEEEEECCC-CC-cHHHHHHHHHHHH--------cCCCcEEEEEeCCCCCCcHHHHHHHHHHH
Confidence 23 4456888999999988776532 21 1222334444444 344 488999999986443332 344
Q ss_pred HHHHHHH-h----hcCCCCCCccCCCchh
Q 004126 145 REDIQKI-W----DSVPKPQAHMETPLSE 168 (772)
Q Consensus 145 ~~~l~~i-w----~~i~kpsa~~~~~l~d 168 (772)
.+.+..+ | -.+++.|++.+.+..+
T Consensus 145 ~~~l~~~g~~~~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 145 RELLSKYGFDGDNTPIVRGSALKALEGDD 173 (195)
T ss_pred HHHHHHhcccccCCeEEEeeCccccCCCC
Confidence 5555444 3 3477889998887543
No 65
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.07 E-value=2.5e-09 Score=101.98 Aligned_cols=154 Identities=12% Similarity=-0.021 Sum_probs=88.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|||||||+|++.+.+|.. ....|+...+........ ..+-++||+|-. +. . .....
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~---~~---~----~l~~~ 68 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNHFVD-----EYDPTIEDSYRKQVVIDGETCLLDILDTAGQE---EY---S----AMRDQ 68 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCcC-----CcCCcchheEEEEEEECCEEEEEEEEECCCCc---ch---H----HHHHH
Confidence 6899999999999999999988753 223455444433333232 335579999953 11 1 12223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 159 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kps 159 (772)
.+..+|++++.....+.. ...-+....+...+.......|+++|.||+|..+.......+.+..+..--.+.+.|
T Consensus 69 ~~~~~~~~i~v~~~~~~~-----s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 143 (162)
T cd04138 69 YMRTGEGFLCVFAINSRK-----SFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETS 143 (162)
T ss_pred HHhcCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEec
Confidence 455678776654332211 111121111211222233578999999999976433222222222222222466789
Q ss_pred CccCCCchhhHHHHHh
Q 004126 160 AHMETPLSEFFNVEVV 175 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~ 175 (772)
+..+.+++++|+....
T Consensus 144 a~~~~gi~~l~~~l~~ 159 (162)
T cd04138 144 AKTRQGVEEAFYTLVR 159 (162)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999987654
No 66
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.06 E-value=2e-09 Score=103.47 Aligned_cols=157 Identities=13% Similarity=0.023 Sum_probs=92.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCc--ccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTT--KGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTT--rGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|++|||||||+|+|++.++.... .+.+. .....-........+.++||||-. + + +.....
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~---~------~-~~~~~~ 69 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNEFSENQ----ESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE---R------Y-RSLAPM 69 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCC----CCccceeEEEEEEEECCEEEEEEEEeCCchH---H------H-HHHHHH
Confidence 689999999999999999999987522 11111 111111122233567899999932 1 1 223344
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++++.+...+.. .........+...... ....|+++|+||.|..+..... +.+........-.+.+.
T Consensus 70 ~~~~~~~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (163)
T cd01860 70 YYRGAAAAIVVYDITSEE-----SFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFET 143 (163)
T ss_pred HhccCCEEEEEEECcCHH-----HHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEE
Confidence 567899988865443221 1111222222222222 2568899999999975322111 12222222222346788
Q ss_pred CCccCCCchhhHHHHHhhcC
Q 004126 159 QAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lp 178 (772)
|+..+.+++++|+.....||
T Consensus 144 Sa~~~~~v~~l~~~l~~~l~ 163 (163)
T cd01860 144 SAKTGENVNELFTEIAKKLP 163 (163)
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 99999999999998887765
No 67
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.05 E-value=1.9e-09 Score=105.34 Aligned_cols=158 Identities=14% Similarity=0.007 Sum_probs=94.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|++.+.+|..... +..-++.+.++-........+.++||||-+ . .+......+
T Consensus 7 i~vvG~~~vGKSsLl~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~-~~~~~~~~~ 74 (168)
T cd01866 7 YIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITIDGKQIKLQIWDTAGQE---------S-FRSITRSYY 74 (168)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEECCCcH---------H-HHHHHHHHh
Confidence 7899999999999999999998865421 111122222332233334578999999943 1 233445566
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.+...+.. ...-+...++. ++-...+..|+++|.||.|..+...+. +............+.+.|+
T Consensus 75 ~~~d~il~v~d~~~~~-----s~~~~~~~~~~-~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (168)
T cd01866 75 RGAAGALLVYDITRRE-----TFNHLTSWLED-ARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSA 148 (168)
T ss_pred ccCCEEEEEEECCCHH-----HHHHHHHHHHH-HHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 7899998866544321 11112222221 111122568999999999975322221 2222222233335778899
Q ss_pred ccCCCchhhHHHHHhhc
Q 004126 161 HMETPLSEFFNVEVVAL 177 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~L 177 (772)
..+.+++++|+.....+
T Consensus 149 ~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 149 KTASNVEEAFINTAKEI 165 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998765543
No 68
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=8.6e-10 Score=123.48 Aligned_cols=125 Identities=17% Similarity=0.125 Sum_probs=92.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHH---HHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEK---QSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~---k~al 78 (772)
|+|+|+||+|||+|||+|.....+|+|+ -+-|||+.+-+..+.....+.++||-|+.. +.+ +..|. .-|.
T Consensus 271 iaIvGrPNvGKSSLlNaL~~~drsIVSp---v~GTTRDaiea~v~~~G~~v~L~DTAGiRe-~~~---~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 271 IAIVGRPNVGKSSLLNALSREDRSIVSP---VPGTTRDAIEAQVTVNGVPVRLSDTAGIRE-ESN---DGIEALGIERAR 343 (531)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceEeCC---CCCcchhhheeEeecCCeEEEEEecccccc-ccC---ChhHHHhHHHHH
Confidence 7899999999999999999999999995 588999999999998889999999999973 333 23332 5578
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC----CCCccEEEEEeCCCCC
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS----PRKTTLMFVIRDKTRT 135 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~----~~k~~llfVIrd~d~t 135 (772)
-++..|||+++.+....-- ..+...+...+-.+-..++. ..+.++++|+|+.|..
T Consensus 344 k~~~~advi~~vvda~~~~--t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~ 402 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESD--TESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLV 402 (531)
T ss_pred HHHhhcCEEEEEecccccc--cccchHHHHHHHHhccceEEEeccccccceEEEechhhcc
Confidence 8899999999887652101 11223333333333223322 1578889999999865
No 69
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.04 E-value=3.5e-09 Score=99.85 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=88.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|++|+|||||+|+|.|..|.. ....|.|.-..........+.++||||.. .+ +......+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~---------~~-~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE------DTIPTVGFNMRKVTKGNVTLKVWDLGGQP---------RF-RSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc------CccCCCCcceEEEEECCEEEEEEECCCCH---------hH-HHHHHHHH
Confidence 7899999999999999999998853 12234344333333344678999999963 11 22334456
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC---CCCccEEEEEeCCCCCChhchHHHHHHH-HHHHhh---c
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS---PRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWD---S 154 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~---~~k~~llfVIrd~d~t~~e~l~~~l~~~-l~~iw~---~ 154 (772)
..+|++++.+...+.. -+....+...++.. ....|+++|+||.|..+.......+... +...+. .
T Consensus 66 ~~~d~ii~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (159)
T cd04159 66 RGVNAIVYVVDAADRT--------ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVS 137 (159)
T ss_pred hcCCEEEEEEECCCHH--------HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceE
Confidence 7899988766443211 11111111111111 1467899999999976544333221111 111111 2
Q ss_pred CCCCCCccCCCchhhHHHHH
Q 004126 155 VPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~ 174 (772)
+...|+..+.+++++|+...
T Consensus 138 ~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 138 CYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred EEEEEeccCCChHHHHHHHh
Confidence 45668888999999988654
No 70
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.03 E-value=1.3e-09 Score=111.53 Aligned_cols=149 Identities=10% Similarity=0.034 Sum_probs=90.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeec-------------------------C--CCCCCCCcccceeeEecCCCCcEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMD-------------------------A--FKGRSQTTKGIWMARCAGIEPCTLI 54 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims-------------------------~--~~~r~QTTrGiw~~i~~~~~~qil~ 54 (772)
|+|||.+|+|||||+|+|++..=.|.+ . .....++|+..-.......+.++.+
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~l 81 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFII 81 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEE
Confidence 799999999999999999874322221 0 0112567888777777677889999
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCC
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 134 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~ 134 (772)
+||||.. +|.. ....++..+|++|+.+...+ |. .......+..+.. . ..+++++|+||+|.
T Consensus 82 iDTpG~~---------~~~~-~~~~~~~~ad~~llVvD~~~-~~-~~~~~~~~~~~~~-----~--~~~~iIvviNK~D~ 142 (208)
T cd04166 82 ADTPGHE---------QYTR-NMVTGASTADLAILLVDARK-GV-LEQTRRHSYILSL-----L--GIRHVVVAVNKMDL 142 (208)
T ss_pred EECCcHH---------HHHH-HHHHhhhhCCEEEEEEECCC-Cc-cHhHHHHHHHHHH-----c--CCCcEEEEEEchhc
Confidence 9999963 2322 24457889999988776532 10 1111111111111 1 23568889999998
Q ss_pred CCh--hc---hHHHHHHHHHHH-h--hcCCCCCCccCCCchhh
Q 004126 135 TPL--EN---LEPVLREDIQKI-W--DSVPKPQAHMETPLSEF 169 (772)
Q Consensus 135 t~~--e~---l~~~l~~~l~~i-w--~~i~kpsa~~~~~l~dl 169 (772)
.+. +. +...+.+.+..+ + ..+.+.|+..+.++.+.
T Consensus 143 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 143 VDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 642 21 222333333332 1 23678899999888754
No 71
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.02 E-value=1.9e-09 Score=103.37 Aligned_cols=154 Identities=16% Similarity=0.075 Sum_probs=92.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccc---eeeEec-CCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGI---WMARCA-GIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGi---w~~i~~-~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.++|++|||||||+|++.+.++.. ..++|.+. ...+.. ....++.++||||.. .+. ...
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~-~~~ 66 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGKFSE------QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE---------RFR-SIT 66 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC------CCCCceeeEEEEEEEEECCEEEEEEEEECCChH---------HHH-HHH
Confidence 7899999999999999999999853 33344332 222222 122477899999953 122 234
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~ 156 (772)
...+..+|++|+.+...+... ...+....+ .+..+.....|+++|+||.|..+...+. +...+.....--.+.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s-----~~~~~~~l~-~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRES-----FENLKNWLK-ELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFF 140 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHH-----HHHHHHHHH-HHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEE
Confidence 555678998887665433221 111211111 1111222478999999999976432221 222222222212367
Q ss_pred CCCCccCCCchhhHHHHHhhc
Q 004126 157 KPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~L 177 (772)
+.++..+.+++++|+.....+
T Consensus 141 e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 141 ETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 788999999999999877654
No 72
>CHL00071 tufA elongation factor Tu
Probab=99.02 E-value=2.2e-09 Score=120.97 Aligned_cols=144 Identities=15% Similarity=0.094 Sum_probs=86.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeee----------ecCC--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFRE----------MDAF--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDD 69 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsi----------ms~~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~ 69 (772)
|+|+|.+++|||||+|+|+|..-.+ +|.. ...+.+|..........++.++.|+|||| |
T Consensus 15 i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPG-h-------- 85 (409)
T CHL00071 15 IGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPG-H-------- 85 (409)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCC-h--------
Confidence 7899999999999999999863322 2110 01133444443333344667999999999 4
Q ss_pred cHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCcc-EEEEEeCCCCCChhchHH----HH
Q 004126 70 TAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LMFVIRDKTRTPLENLEP----VL 144 (772)
Q Consensus 70 ~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~-llfVIrd~d~t~~e~l~~----~l 144 (772)
.+| .+.+..++..+|++++.+...+ |. .+.....+..+.+ ...| +++|+||+|..+.+.+.+ .+
T Consensus 86 ~~~-~~~~~~~~~~~D~~ilVvda~~-g~-~~qt~~~~~~~~~--------~g~~~iIvvvNK~D~~~~~~~~~~~~~~l 154 (409)
T CHL00071 86 ADY-VKNMITGAAQMDGAILVVSAAD-GP-MPQTKEHILLAKQ--------VGVPNIVVFLNKEDQVDDEELLELVELEV 154 (409)
T ss_pred HHH-HHHHHHHHHhCCEEEEEEECCC-CC-cHHHHHHHHHHHH--------cCCCEEEEEEEccCCCCHHHHHHHHHHHH
Confidence 133 3455788999999998776532 21 1122223333332 3455 789999999876544433 34
Q ss_pred HHHHHHH-hh----cCCCCCCccCCC
Q 004126 145 REDIQKI-WD----SVPKPQAHMETP 165 (772)
Q Consensus 145 ~~~l~~i-w~----~i~kpsa~~~~~ 165 (772)
.+.+..+ |. .+.+.|++.+.+
T Consensus 155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 155 RELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHhCCCCCcceEEEcchhhccc
Confidence 4444333 21 245566666543
No 73
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.02 E-value=3.6e-09 Score=102.64 Aligned_cols=153 Identities=12% Similarity=0.046 Sum_probs=92.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCccccee---eEecC-CCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM---ARCAG-IEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~---~i~~~-~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|+|.+|+|||||+|++.+-+|.. ..++|.|.-. .+... ...++.++||||-. .| ....
T Consensus 6 v~vvG~~~~GKTsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~-~~~~ 69 (165)
T cd01864 6 IILIGDSNVGKTCVVQRFKSGTFSE------RQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQE---------RF-RTIT 69 (165)
T ss_pred EEEECCCCCCHHHHHHHHhhCCCcc------cCCCccceEEEEEEEEECCEEEEEEEEECCChH---------HH-HHHH
Confidence 6899999999999999999877752 3456665322 22111 12478999999932 12 2334
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc-hHHHHHHHHHHHh-hcC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN-LEPVLREDIQKIW-DSV 155 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~-l~~~l~~~l~~iw-~~i 155 (772)
...+..+|++++.+...+.. ...-++...+.... +...+.|+++|.||+|+..... ..+...+...... ..+
T Consensus 70 ~~~~~~~d~~llv~d~~~~~-----s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRS-----SFESVPHWIEEVEK-YGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAV 143 (165)
T ss_pred HHHhccCCEEEEEEECcCHH-----HHHhHHHHHHHHHH-hCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEE
Confidence 45567899998865432211 11112222221111 2235789999999999754322 2222333333332 246
Q ss_pred CCCCCccCCCchhhHHHHHhh
Q 004126 156 PKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~ 176 (772)
.+.|+..+.++.++|+.....
T Consensus 144 ~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 144 LETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 788999999999999876643
No 74
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.02 E-value=2.9e-09 Score=104.46 Aligned_cols=151 Identities=15% Similarity=0.065 Sum_probs=93.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.++||||||+|+|.+..|. ...+|.|.-..........+.++||||.+.. + ......+
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~~~-------~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~-~---------~~~~~~~ 64 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEFM-------QPIPTIGFNVETVEYKNLKFTIWDVGGKHKL-R---------PLWKHYY 64 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC-------CcCCcCceeEEEEEECCEEEEEEECCCChhc-c---------hHHHHHh
Confidence 689999999999999999997553 2456666544444455678999999997521 1 1223345
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCCChhchHHHHHHHHH--HHhh---
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRTPLENLEPVLREDIQ--KIWD--- 153 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t~~e~l~~~l~~~l~--~iw~--- 153 (772)
..+|++++.+...+.. -+..+.+...+++.. .+.|+++|.||.|+...-.. +.+.+.+. .+..
T Consensus 65 ~~ad~ii~V~D~s~~~--------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~ 135 (169)
T cd04158 65 LNTQAVVFVVDSSHRD--------RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV-EEMTELLSLHKLCCGRS 135 (169)
T ss_pred ccCCEEEEEEeCCcHH--------HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCH-HHHHHHhCCccccCCCc
Confidence 7899998866543321 122222222222221 35799999999997432111 11222221 1111
Q ss_pred -cCCCCCCccCCCchhhHHHHHhhcC
Q 004126 154 -SVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 154 -~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
.+.+.|+..+.+++++|+.....|+
T Consensus 136 ~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 136 WYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred EEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 3557799999999999998876554
No 75
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.01 E-value=2.8e-09 Score=106.95 Aligned_cols=158 Identities=13% Similarity=0.104 Sum_probs=95.7
Q ss_pred EEEeCCCCCChHHHHhHHhCC-CeeeecCC--CCCCCCcccceeeEecC--------------CCCcEEEEecCCCCCcC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT-NFREMDAF--KGRSQTTKGIWMARCAG--------------IEPCTLIMDLEGTDGRE 64 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt-kfsims~~--~~r~QTTrGiw~~i~~~--------------~~~qil~lDteG~~s~e 64 (772)
|+|+|.+|+|||||+|+|.+. ....++.. ..++.||.+.-...... ...++.++||||.+
T Consensus 3 i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~--- 79 (192)
T cd01889 3 VGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA--- 79 (192)
T ss_pred EEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH---
Confidence 789999999999999999973 11112110 12345777665332222 25689999999973
Q ss_pred CCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---
Q 004126 65 RGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE--- 141 (772)
Q Consensus 65 r~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~--- 141 (772)
.+. +....++..+|++++.+...+ | ........+. . .+. ...|+++|+||.|....+..+
T Consensus 80 ------~~~-~~~~~~~~~~d~vi~VvD~~~-~----~~~~~~~~~~-~-~~~---~~~~~iiv~NK~Dl~~~~~~~~~~ 142 (192)
T cd01889 80 ------SLI-RTIIGGAQIIDLMLLVVDATK-G----IQTQTAECLV-I-GEI---LCKKLIVVLNKIDLIPEEERERKI 142 (192)
T ss_pred ------HHH-HHHHHHHhhCCEEEEEEECCC-C----ccHHHHHHHH-H-HHH---cCCCEEEEEECcccCCHHHHHHHH
Confidence 232 334566778999988766532 1 1111111111 0 111 356899999999986544332
Q ss_pred HHHHHHHHHH-----hh--cCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 142 PVLREDIQKI-----WD--SVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 142 ~~l~~~l~~i-----w~--~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
+.+.+.+... +. .+.+.|+.++.+++++++......|.
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 143 EKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 2233332221 11 36678999999999999987776554
No 76
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.01 E-value=5e-09 Score=99.66 Aligned_cols=160 Identities=11% Similarity=0.014 Sum_probs=88.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCC-ccHHHHHHHHH-
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGED-DTAFEKQSALF- 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~-~~~fe~k~alf- 79 (772)
|.++|.+|+|||||+|.|.|..+..-.. +...+|+.++.... +.++.++||||+....-... ...+..-...+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~--~~~~~t~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTS--KTPGKTQLINFFNV---NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeec--CCCCcceeEEEEEc---cCeEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 6899999999999999999644433221 44556666554333 24999999999864322110 01222211111
Q ss_pred -HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHH-H-hh
Q 004126 80 -ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQK-I-WD 153 (772)
Q Consensus 80 -ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~-i-w~ 153 (772)
.-...+.+++.+...... ......+++.+.. .+.|+++|+|++|..+.+... ..+...++. . -.
T Consensus 77 ~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~l~~--------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGP--TEIDLEMLDWLEE--------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDP 146 (170)
T ss_pred HhChhhhEEEEEEEcCcCC--CHhHHHHHHHHHH--------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCC
Confidence 111245555544322110 1112223333333 468899999999875443322 222222221 1 12
Q ss_pred cCCCCCCccCCCchhhHHHHHhh
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
.+.+.++..+.++.++++.....
T Consensus 147 ~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 147 PIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred ceEEEecCCCCCHHHHHHHHHHh
Confidence 35567888899999998876543
No 77
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.01 E-value=3.4e-09 Score=102.20 Aligned_cols=156 Identities=13% Similarity=0.022 Sum_probs=90.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|+|.+|||||||+|++.+.+|.... ..|+...+.-... .....+-++||||.. +. ..++ ..
T Consensus 3 i~v~G~~~~GKTsli~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~---~~----~~~~---~~ 67 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQGHFVDDY-----DPTIEDSYRKQIEIDGEVCLLDILDTAGQE---EF----SAMR---DQ 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCccc-----CCchhhhEEEEEEECCEEEEEEEEECCCcc---cc----hHHH---HH
Confidence 789999999999999999998886432 2344433322221 223466789999965 11 1122 23
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|.+++.....+.. ...-+....+...+.......|+++|.||+|..+...+. ....+..+.....+.+.
T Consensus 68 ~~~~~~~~i~v~d~~~~~-----s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQ-----SFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLET 142 (164)
T ss_pred HHhhCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEe
Confidence 356678776655433211 111122222222222333568999999999976533322 12222222222345678
Q ss_pred CCccCCCchhhHHHHHhhc
Q 004126 159 QAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~L 177 (772)
|+..+.+++++|+..+..+
T Consensus 143 Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 143 SAKERVNVDEAFYDLVREI 161 (164)
T ss_pred ecCCCCCHHHHHHHHHHHH
Confidence 9999999999998876544
No 78
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.01 E-value=7.7e-10 Score=118.74 Aligned_cols=80 Identities=28% Similarity=0.221 Sum_probs=68.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCC-----CcCCCCCccHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD-----GRERGEDDTAFEKQS 76 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~-----s~er~e~~~~fe~k~ 76 (772)
|++||.||+|||||||.|-|++-.+-+ .+=||....=|...-++.+|=++|+||+- |+.|| +.
T Consensus 66 v~lVGfPsvGKStLL~~LTnt~seva~----y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG--------~~ 133 (365)
T COG1163 66 VALVGFPSVGKSTLLNKLTNTKSEVAD----YPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRG--------RQ 133 (365)
T ss_pred EEEEcCCCccHHHHHHHHhCCCccccc----cCceecccccceEeecCceEEEEcCcccccCcccCCCCc--------ce
Confidence 789999999999999999999988765 58899999999999999999999999985 23333 34
Q ss_pred HHHHhhcccEEEEeecc
Q 004126 77 ALFALAVSDIVLINMWC 93 (772)
Q Consensus 77 alfALa~sDvliiNl~~ 93 (772)
++.+...||.+|+.+..
T Consensus 134 vlsv~R~ADlIiiVld~ 150 (365)
T COG1163 134 VLSVARNADLIIIVLDV 150 (365)
T ss_pred eeeeeccCCEEEEEEec
Confidence 56777889999988765
No 79
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.01 E-value=3.3e-09 Score=102.56 Aligned_cols=156 Identities=15% Similarity=0.021 Sum_probs=88.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|+|++|||||||+|+|.+.+|.... .+.++........... ...+-++||||.. + + ......
T Consensus 6 i~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~---~------~-~~~~~~ 71 (165)
T cd01868 6 IVLIGDSGVGKSNLLSRFTRNEFNLDS----KSTIGVEFATRSIQIDGKTIKAQIWDTAGQE---R------Y-RAITSA 71 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCC----CCccceEEEEEEEEECCEEEEEEEEeCCChH---H------H-HHHHHH
Confidence 689999999999999999999987533 2222222222222222 2467899999963 1 1 112234
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.....+...... -...++.+.+ +.....|+++|.+|.|......+. +..........-.+.+.
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~-----~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (165)
T cd01868 72 YYRGAVGALLVYDITKKQTFEN-VERWLKELRD-----HADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIET 145 (165)
T ss_pred HHCCCCEEEEEEECcCHHHHHH-HHHHHHHHHH-----hCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEE
Confidence 4567887766554433211100 0011121111 122358999999999975332221 22222222111236678
Q ss_pred CCccCCCchhhHHHHHhhc
Q 004126 159 QAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~L 177 (772)
|+..+.+++++|+.....+
T Consensus 146 Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 146 SALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 9999999999999876544
No 80
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.01 E-value=5.5e-09 Score=99.44 Aligned_cols=154 Identities=12% Similarity=0.024 Sum_probs=94.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|+++||||||+|+|++.+|.- ....||........... ...+.++|+||... .......
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~ 66 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFVE-----EYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----------FSAMRDL 66 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCc-----CcCCChhHeEEEEEEECCEEEEEEEEECCChHH----------HHHHHHH
Confidence 6899999999999999999988532 34556666555444433 34677999999651 1123345
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhch-HHHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL-EPVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l-~~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++++.....+. ....-+......-.+......+|+++|+||.|..+.... .+.+.+...+.-..+.+.
T Consensus 67 ~~~~~~~~i~v~d~~~~-----~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (160)
T cd00876 67 YIRQGDGFILVYSITDR-----ESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIET 141 (160)
T ss_pred HHhcCCEEEEEEECCCH-----HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEe
Confidence 57788988775533221 111112222222222333357999999999997652222 222222222222256678
Q ss_pred CCccCCCchhhHHHHHh
Q 004126 159 QAHMETPLSEFFNVEVV 175 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~ 175 (772)
|+..+.+++++|+....
T Consensus 142 S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 142 SAKDNINIDEVFKLLVR 158 (160)
T ss_pred ccCCCCCHHHHHHHHHh
Confidence 89999999999987654
No 81
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.99 E-value=7.7e-09 Score=99.03 Aligned_cols=155 Identities=12% Similarity=-0.006 Sum_probs=91.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+++|.+|||||||+|+|.+..|.- +...||...+....... ...+.++||||-... ...+-.
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~~ 67 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDEFVE-----DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY----------AAIRDN 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCcc-----ccCCcchhhEEEEEEECCEEEEEEEEECCChhhh----------hHHHHH
Confidence 6899999999999999999887752 33445555544333332 246888999996411 123345
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh-chHHHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e-~l~~~l~~~l~~iw~~i~kp 158 (772)
.+..+|.+++.+...+.. + ..-+.....-.++.....+.|+++|+||.|..+.. .......+..+..--.+.+.
T Consensus 68 ~~~~~~~~i~v~d~~~~~----s-~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04139 68 YHRSGEGFLLVFSITDME----S-FTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVET 142 (164)
T ss_pred HhhcCCEEEEEEECCCHH----H-HHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEe
Confidence 667888877655432211 1 11111111111222223578999999999975422 11122222222211246788
Q ss_pred CCccCCCchhhHHHHHhh
Q 004126 159 QAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~ 176 (772)
|+.++.+++++|+.....
T Consensus 143 Sa~~~~gi~~l~~~l~~~ 160 (164)
T cd04139 143 SAKTRQNVEKAFYDLVRE 160 (164)
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999876543
No 82
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.99 E-value=1.8e-09 Score=126.80 Aligned_cols=153 Identities=14% Similarity=0.033 Sum_probs=99.5
Q ss_pred CCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhccc
Q 004126 6 FVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSD 85 (772)
Q Consensus 6 G~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sD 85 (772)
|.||+|||||+|+|.|.++.+. ..+.||...-.+.....+.++.++||||.++......+....+. ......+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~----n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~--~l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVG----NWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARD--YLLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeec----CCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHH--HHhhcCCC
Confidence 8999999999999999987543 36889998877777666778999999999854322111111111 12335789
Q ss_pred EEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcCCCCCCccCC
Q 004126 86 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVPKPQAHMET 164 (772)
Q Consensus 86 vliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i~kpsa~~~~ 164 (772)
++++.+...+.. .+..+...+.+ ...|+++|+||+|......+.... +.+.+. --.+.+.|+.++.
T Consensus 75 vvI~VvDat~le----r~l~l~~ql~~--------~~~PiIIVlNK~Dl~~~~~i~~d~-~~L~~~lg~pvv~tSA~tg~ 141 (591)
T TIGR00437 75 LVVNVVDASNLE----RNLYLTLQLLE--------LGIPMILALNLVDEAEKKGIRIDE-EKLEERLGVPVVPTSATEGR 141 (591)
T ss_pred EEEEEecCCcch----hhHHHHHHHHh--------cCCCEEEEEehhHHHHhCCChhhH-HHHHHHcCCCEEEEECCCCC
Confidence 887766543321 12222222223 568999999999975433332211 222222 2246678999999
Q ss_pred CchhhHHHHHhhc
Q 004126 165 PLSEFFNVEVVAL 177 (772)
Q Consensus 165 ~l~dlf~~~~~~L 177 (772)
+++++|+......
T Consensus 142 Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 142 GIERLKDAIRKAI 154 (591)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999877654
No 83
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.99 E-value=5e-09 Score=100.59 Aligned_cols=154 Identities=14% Similarity=0.075 Sum_probs=89.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|||||||+|++.+..|.. ....|+...+.......+ ..+-++||||.. +. .. ++ ..
T Consensus 4 i~i~G~~~vGKTsl~~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---~~---~~-~~---~~ 68 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQGIFVE-----KYDPTIEDSYRKQIEVDGQQCMLEILDTAGTE---QF---TA-MR---DL 68 (163)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCc-----ccCCchhhhEEEEEEECCEEEEEEEEECCCcc---cc---ch-HH---HH
Confidence 6899999999999999999988753 234455555443333232 345679999974 11 11 11 22
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh-cCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD-SVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~-~i~kp 158 (772)
-+..+|++++.....+.. ...-++...+...+.....+.|+++|.||+|..+...+.......+.+-|. .+.+.
T Consensus 69 ~~~~~~~~ilv~d~~~~~-----s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (163)
T cd04136 69 YIKNGQGFVLVYSITSQS-----SFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYET 143 (163)
T ss_pred HhhcCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEe
Confidence 245788887654332211 111122222211222223568999999999976543332211222222232 35678
Q ss_pred CCccCCCchhhHHHHHh
Q 004126 159 QAHMETPLSEFFNVEVV 175 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~ 175 (772)
|+..+.++.++|+....
T Consensus 144 Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 144 SAKSKINVDEVFADLVR 160 (163)
T ss_pred cCCCCCCHHHHHHHHHH
Confidence 99999999999987654
No 84
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.99 E-value=2e-09 Score=101.82 Aligned_cols=137 Identities=11% Similarity=0.040 Sum_probs=82.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|||.+|+|||||+|+|.|..+.. ..|.++-. .-.++||||.... . ..+.+.. ..++
T Consensus 3 v~liG~~~vGKSsL~~~l~~~~~~~--------~~t~~~~~--------~~~~iDt~G~~~~----~-~~~~~~~-~~~~ 60 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGEEILY--------KKTQAVEY--------NDGAIDTPGEYVE----N-RRLYSAL-IVTA 60 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCCcccc--------ccceeEEE--------cCeeecCchhhhh----h-HHHHHHH-HHHh
Confidence 7899999999999999999988742 12322221 1157899998421 1 2222222 2357
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i~kpsa 160 (772)
..+|++|+.+...+.-... +..++ + . ...|+++|+||+|+.+.+...+...+..+.. ...+.+.|+
T Consensus 61 ~~ad~vilv~d~~~~~s~~--~~~~~----~----~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 127 (142)
T TIGR02528 61 ADADVIALVQSATDPESRF--PPGFA----S----I---FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISS 127 (142)
T ss_pred hcCCEEEEEecCCCCCcCC--ChhHH----H----h---ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEec
Confidence 8999998866543322111 11111 1 1 1248999999999865332222223333322 224566799
Q ss_pred ccCCCchhhHHHH
Q 004126 161 HMETPLSEFFNVE 173 (772)
Q Consensus 161 ~~~~~l~dlf~~~ 173 (772)
..+.+++++|+..
T Consensus 128 ~~~~gi~~l~~~l 140 (142)
T TIGR02528 128 VDEQGLEALVDYL 140 (142)
T ss_pred CCCCCHHHHHHHH
Confidence 9999999998764
No 85
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.98 E-value=7.4e-09 Score=102.93 Aligned_cols=150 Identities=14% Similarity=-0.058 Sum_probs=93.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|++|||||||+|+|.|.++... .+|.+.-.+........+.++||||-. .+ +......+
T Consensus 22 i~ilG~~~~GKStLi~~l~~~~~~~~-------~~T~~~~~~~i~~~~~~~~l~D~~G~~---------~~-~~~~~~~~ 84 (190)
T cd00879 22 ILFLGLDNAGKTTLLHMLKDDRLAQH-------VPTLHPTSEELTIGNIKFKTFDLGGHE---------QA-RRLWKDYF 84 (190)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccc-------CCccCcceEEEEECCEEEEEEECCCCH---------HH-HHHHHHHh
Confidence 68999999999999999999887532 234444444444455678899999943 11 22334456
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC---CCCccEEEEEeCCCCC---ChhchHHHHHHHH-------
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS---PRKTTLMFVIRDKTRT---PLENLEPVLREDI------- 148 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~---~~k~~llfVIrd~d~t---~~e~l~~~l~~~l------- 148 (772)
..+|.+++.+...+.+.. ....+...++.. ..+.|+++|.||.|+. +.+.+++.+...-
T Consensus 85 ~~ad~iilV~D~~~~~s~--------~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 156 (190)
T cd00879 85 PEVDGIVFLVDAADPERF--------QESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGV 156 (190)
T ss_pred ccCCEEEEEEECCcHHHH--------HHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccc
Confidence 788999887755433211 111121122221 2468999999999974 3333333322100
Q ss_pred ----HH-HhhcCCCCCCccCCCchhhHHHHHhh
Q 004126 149 ----QK-IWDSVPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 149 ----~~-iw~~i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
.. -+..+.+.|+..+.++++.|+.....
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 157 SLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 00 11236677999999999999877554
No 86
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.97 E-value=9e-09 Score=100.41 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=91.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceee-EecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA-RCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~-i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|.|+|.+|+|||||+|++.+.+|.-- .+.|+.+.... ........+.++||||... .+ ......
T Consensus 3 v~ivG~~~vGKTsl~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~---------~~~~~~ 67 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVSEEFPEN-----VPRVLPEITIPADVTPERVPTTIVDTSSRPQ-DR---------ANLAAE 67 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCcc-----CCCcccceEeeeeecCCeEEEEEEeCCCchh-hh---------HHHhhh
Confidence 68999999999999999999888421 12222222111 1223456789999999751 11 112334
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCChhc---hHHHHHHHHHHHh--h
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTPLEN---LEPVLREDIQKIW--D 153 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~~e~---l~~~l~~~l~~iw--~ 153 (772)
+..+|++++.+...+ ..-+..+.+..+..+. ..+.|+++|.||+|+.+... ++..+....+.+. .
T Consensus 68 ~~~ad~~ilv~d~~~--------~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 139 (166)
T cd01893 68 IRKANVICLVYSVDR--------PSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIE 139 (166)
T ss_pred cccCCEEEEEEECCC--------HHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhccc
Confidence 588998877553322 1112222111111111 14789999999999865443 2222222112221 2
Q ss_pred cCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
.+...|+.++.+++++|+.....+-|
T Consensus 140 ~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 140 TCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred EEEEeccccccCHHHHHHHHHHHhcC
Confidence 46678999999999999988877665
No 87
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.97 E-value=3.8e-09 Score=112.85 Aligned_cols=140 Identities=15% Similarity=0.073 Sum_probs=84.5
Q ss_pred EEEeCCCCCChHHHHhHHhC---C--Cee-------eecC--CCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG---T--NFR-------EMDA--FKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG---t--kfs-------ims~--~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e 67 (772)
|+|+|.+++|||||.|+|+. . +.. +++. ...+.++|...-.......+.++.|+||||.+
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~------ 75 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHV------ 75 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcH------
Confidence 78999999999999999973 2 111 1111 01123344443333334467899999999975
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC--ChhchHHHHH
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT--PLENLEPVLR 145 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t--~~e~l~~~l~ 145 (772)
+|. ..+..++..+|++|+.+...+ |. ......+++.+.+ .+.|++++|||+|.. +.+.+.+.+.
T Consensus 76 ---df~-~~~~~~l~~aD~ailVVDa~~-g~-~~~t~~~~~~~~~--------~~~p~ivviNK~D~~~a~~~~~~~~l~ 141 (270)
T cd01886 76 ---DFT-IEVERSLRVLDGAVAVFDAVA-GV-EPQTETVWRQADR--------YNVPRIAFVNKMDRTGADFFRVVEQIR 141 (270)
T ss_pred ---HHH-HHHHHHHHHcCEEEEEEECCC-CC-CHHHHHHHHHHHH--------cCCCEEEEEECCCCCCCCHHHHHHHHH
Confidence 122 346778999999998887643 21 1122334444443 567889999999975 3334444444
Q ss_pred HHHHH-HhhcCCCCCCc
Q 004126 146 EDIQK-IWDSVPKPQAH 161 (772)
Q Consensus 146 ~~l~~-iw~~i~kpsa~ 161 (772)
+.+.. .+..+.|.++.
T Consensus 142 ~~l~~~~~~~~~Pisa~ 158 (270)
T cd01886 142 EKLGANPVPLQLPIGEE 158 (270)
T ss_pred HHhCCCceEEEeccccC
Confidence 44432 23445566664
No 88
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.97 E-value=6.2e-09 Score=106.02 Aligned_cols=156 Identities=14% Similarity=0.107 Sum_probs=96.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeE-------------------------------ecCCC-
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR-------------------------------CAGIE- 49 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i-------------------------------~~~~~- 49 (772)
|+|+|..++|||||+.+|-|+..... ..-..||+-... +...+
T Consensus 3 i~~~g~~~~GKttL~~~l~~~~~~~~-----~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (203)
T cd01888 3 IGTIGHVAHGKSTLVKALSGVWTVRF-----KEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGG 77 (203)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCC-----CeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCC
Confidence 78999999999999999987632110 111111211110 00112
Q ss_pred -----CcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCcc
Q 004126 50 -----PCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT 124 (772)
Q Consensus 50 -----~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~ 124 (772)
.++.|+||||- .. +.+..+.+++.+|++++.+...+.+... .....+..+.. ...++
T Consensus 78 ~~~~~~~i~~iDtPG~---------~~-~~~~~~~~~~~~D~~llVvd~~~~~~~~-~t~~~l~~~~~-------~~~~~ 139 (203)
T cd01888 78 ETKLVRHVSFVDCPGH---------EI-LMATMLSGAAVMDGALLLIAANEPCPQP-QTSEHLAALEI-------MGLKH 139 (203)
T ss_pred ccccccEEEEEECCCh---------HH-HHHHHHHhhhcCCEEEEEEECCCCCCCc-chHHHHHHHHH-------cCCCc
Confidence 68999999993 22 3557788899999999888765432111 22223332222 12357
Q ss_pred EEEEEeCCCCCChhchHHH---HHHHHHHH---hhcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 125 LMFVIRDKTRTPLENLEPV---LREDIQKI---WDSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 125 llfVIrd~d~t~~e~l~~~---l~~~l~~i---w~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
+++|+||+|+.+.+.+... +.+.++.. ...+.+.|+..+.+++++|+.....+|..
T Consensus 140 iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 140 IIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred EEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 8999999998765444322 22222221 12367789999999999999998888753
No 89
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.97 E-value=8.8e-09 Score=98.83 Aligned_cols=154 Identities=14% Similarity=0.012 Sum_probs=91.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEe----cCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC----AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~----~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|+++|.+++|||||+|++.|.+|.. ..++|-|.=.+.. ......+-++||||.+ .|. ...
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~-~~~ 66 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGRFVS------KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP---------EYL-EVR 66 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC------CCCCccceeEEEEEEEECCeEEEEEEEECCccH---------HHH-HHH
Confidence 6899999999999999999998852 3455555332211 1234678899999974 111 222
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC----CCccEEEEEeCCCCCChhchH-HHHHHHHHHHh
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP----RKTTLMFVIRDKTRTPLENLE-PVLREDIQKIW 152 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~----~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw 152 (772)
...+..+|++|+.+...+.. ...-+....+...+...+ .+.|+++|.+|.|..+..... ..........-
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~-----s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 141 (168)
T cd04119 67 NEFYKDTQGVLLVYDVTDRQ-----SFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKG 141 (168)
T ss_pred HHHhccCCEEEEEEECCCHH-----HHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcC
Confidence 33467899988765433221 111121111111122222 468999999999976322211 11112221111
Q ss_pred hcCCCCCCccCCCchhhHHHHHhh
Q 004126 153 DSVPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 153 ~~i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
-.+.+.|+..+.++.++|+..+..
T Consensus 142 ~~~~~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 142 FKYFETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 135678999999999999987654
No 90
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.95 E-value=1.2e-08 Score=97.91 Aligned_cols=146 Identities=15% Similarity=0.105 Sum_probs=86.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec-CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA-GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~-~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|.|+|.+|||||||+|++.+..|... .+|.|.-..... .....+.++||||... + +......
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~l~i~D~~G~~~---------~-~~~~~~~ 64 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELVTT-------IPTVGFNVEMLQLEKHLSLTVWDVGGQEK---------M-RTVWKCY 64 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcccc-------cCccCcceEEEEeCCceEEEEEECCCCHh---------H-HHHHHHH
Confidence 78999999999999999999988532 233333222222 2346899999999751 1 1122334
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCCChhchHHHHHHHH--HHHhh--
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRTPLENLEPVLREDI--QKIWD-- 153 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t~~e~l~~~l~~~l--~~iw~-- 153 (772)
+..+|++++.+...+.. -+..+.+...+++.. ...|+++|+||.|.......++ +...+ ..+-.
T Consensus 65 ~~~~~~iv~v~D~~~~~--------~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-i~~~~~~~~~~~~~ 135 (160)
T cd04156 65 LENTDGLVYVVDSSDEA--------RLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEE-ITRRFKLKKYCSDR 135 (160)
T ss_pred hccCCEEEEEEECCcHH--------HHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHH-HHHHcCCcccCCCC
Confidence 67899987766543221 122222222222221 4789999999999753222111 11111 11100
Q ss_pred --cCCCCCCccCCCchhhHHHH
Q 004126 154 --SVPKPQAHMETPLSEFFNVE 173 (772)
Q Consensus 154 --~i~kpsa~~~~~l~dlf~~~ 173 (772)
.+.+.|+..+.+++++|+.+
T Consensus 136 ~~~~~~~Sa~~~~gv~~~~~~i 157 (160)
T cd04156 136 DWYVQPCSAVTGEGLAEAFRKL 157 (160)
T ss_pred cEEEEecccccCCChHHHHHHH
Confidence 25678999999999999864
No 91
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.95 E-value=1e-08 Score=97.74 Aligned_cols=154 Identities=13% Similarity=0.085 Sum_probs=90.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccce-eeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-MARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw-~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~al 78 (772)
|+|+|++++|||||+|+|++..+... ...||+... -.... .....+.++||||... + ....-
T Consensus 3 i~i~G~~~~GKStli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~-~~~~~ 67 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENKFNEK-----HESTTQASFFQKTVNIGGKRIDLAIWDTAGQER---------Y-HALGP 67 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCC-----cCCccceeEEEEEEEECCEEEEEEEEECCchHH---------H-HHhhH
Confidence 68999999999999999999988642 223443332 22222 2234688999999531 1 11222
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCC
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPK 157 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~k 157 (772)
..+..+|++++.+...+.. ...-++..++. +.-+.....|+++|.||+|..+...+. +.+.+........+.+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~-----s~~~~~~~~~~-i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (162)
T cd04123 68 IYYRDADGAILVYDITDAD-----SFQKVKKWIKE-LKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFE 141 (162)
T ss_pred HHhccCCEEEEEEECCCHH-----HHHHHHHHHHH-HHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEE
Confidence 2356789887765443321 11112222221 111122368999999999976433322 2233333333334667
Q ss_pred CCCccCCCchhhHHHHHhh
Q 004126 158 PQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~ 176 (772)
.++..+.+++++|+.....
T Consensus 142 ~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 142 TSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 8999999999999876543
No 92
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.94 E-value=1.3e-08 Score=98.53 Aligned_cols=155 Identities=12% Similarity=0.012 Sum_probs=90.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCC-cccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQT-TKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QT-TrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~al 78 (772)
|+|+|++|+|||||+|+|++..+.... ..| +...+...... ...++-++||||.. .+ .....
T Consensus 3 i~viG~~~~GKSsl~~~l~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~-~~~~~ 67 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNKKFSNQY-----KATIGADFLTKEVTVDDKLVTLQIWDTAGQE---------RF-QSLGV 67 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcCc-----CCccceEEEEEEEEECCEEEEEEEEeCCChH---------HH-HhHHH
Confidence 689999999999999999999886432 122 22222111111 22456799999953 11 12334
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC---CCCccEEEEEeCCCCCC-hhchHHHHHHHHHHH-hh
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS---PRKTTLMFVIRDKTRTP-LENLEPVLREDIQKI-WD 153 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~---~~k~~llfVIrd~d~t~-~e~l~~~l~~~l~~i-w~ 153 (772)
..+..+|++|+.....+. ....-+...++..++... +.+.|+++|+||+|..+ .+...+.+...+... .-
T Consensus 68 ~~~~~~d~~i~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 142 (172)
T cd01862 68 AFYRGADCCVLVYDVTNP-----KSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNI 142 (172)
T ss_pred HHhcCCCEEEEEEECCCH-----HHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCc
Confidence 456789988776543221 111112222222222222 23789999999999863 222222233333222 12
Q ss_pred cCCCCCCccCCCchhhHHHHHhh
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
.+.+.|+.++.+++++|+.....
T Consensus 143 ~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 143 PYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46678999999999999887654
No 93
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.94 E-value=2.2e-09 Score=104.58 Aligned_cols=112 Identities=20% Similarity=0.226 Sum_probs=69.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec-C---------------------------------
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA-G--------------------------------- 47 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~-~--------------------------------- 47 (772)
|+|+|.+|+|||||+|+|+|..+.-. +...||+.+..=... .
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~----~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPS----GVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEF 76 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSS----SSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcc----cccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccc
Confidence 78999999999999999999886433 344566654411110 0
Q ss_pred ----------------------CCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHH
Q 004126 48 ----------------------IEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKP 105 (772)
Q Consensus 48 ----------------------~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~ 105 (772)
....+.++||||+++..... . ..+...+..+|++|+.+...+... .....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~--~----~~~~~~~~~~d~vi~V~~~~~~~~--~~~~~ 148 (168)
T PF00350_consen 77 DSIEGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH--T----EITEEYLPKADVVIFVVDANQDLT--ESDME 148 (168)
T ss_dssp HHHHTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT--S----HHHHHHHSTTEEEEEEEETTSTGG--GHHHH
T ss_pred ccccccccccccceeEEeeccccccceEEEeCCccccchhhh--H----HHHHHhhccCCEEEEEeccCcccc--hHHHH
Confidence 12579999999998755432 1 566666799999988876644221 11122
Q ss_pred HHHHHHHHHHhhcCCCCccEEEEEeCC
Q 004126 106 LLKTVFQVMMRLFSPRKTTLMFVIRDK 132 (772)
Q Consensus 106 lLktv~evnl~lf~~~k~~llfVIrd~ 132 (772)
.++... ......++||+||.
T Consensus 149 ~l~~~~-------~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 149 FLKQML-------DPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHHH-------TTTCSSEEEEEE-G
T ss_pred HHHHHh-------cCCCCeEEEEEcCC
Confidence 222111 12455588998873
No 94
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.94 E-value=6.6e-09 Score=101.86 Aligned_cols=142 Identities=12% Similarity=0.129 Sum_probs=86.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|++|+|||||+|.|.|.. .+ ..+|.++-... . . ++||||..... ..+. +....++
T Consensus 4 i~~iG~~~~GKstl~~~l~~~~-~~-------~~~~~~v~~~~---~--~--~iDtpG~~~~~-----~~~~-~~~~~~~ 62 (158)
T PRK15467 4 IAFVGAVGAGKTTLFNALQGNY-TL-------ARKTQAVEFND---K--G--DIDTPGEYFSH-----PRWY-HALITTL 62 (158)
T ss_pred EEEECCCCCCHHHHHHHHcCCC-cc-------CccceEEEECC---C--C--cccCCccccCC-----HHHH-HHHHHHH
Confidence 7899999999999999999854 21 13444432211 1 1 58999986322 1222 2334567
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-h-hcCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-W-DSVPKPQ 159 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w-~~i~kps 159 (772)
..+|++|+.+...+.-.. .. ..+.++ ...+|+++++||.|..+. ... .+.+.+++. + ..+...|
T Consensus 63 ~~ad~il~v~d~~~~~s~--~~----~~~~~~------~~~~~ii~v~nK~Dl~~~-~~~-~~~~~~~~~~~~~p~~~~S 128 (158)
T PRK15467 63 QDVDMLIYVHGANDPESR--LP----AGLLDI------GVSKRQIAVISKTDMPDA-DVA-ATRKLLLETGFEEPIFELN 128 (158)
T ss_pred hcCCEEEEEEeCCCcccc--cC----HHHHhc------cCCCCeEEEEEccccCcc-cHH-HHHHHHHHcCCCCCEEEEE
Confidence 899999886654322100 11 112221 135689999999997532 222 233333333 2 2466789
Q ss_pred CccCCCchhhHHHHHhhcC
Q 004126 160 AHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~Lp 178 (772)
+..+.+++++|+.....++
T Consensus 129 a~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 129 SHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred CCCccCHHHHHHHHHHhch
Confidence 9999999999987766554
No 95
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.94 E-value=4.7e-09 Score=101.25 Aligned_cols=150 Identities=15% Similarity=0.030 Sum_probs=88.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.+++|||||+|+|.+..+.-. .+|-|.-..........+.++||||... | +......+
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~~~~~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~---------~-~~~~~~~~ 64 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGEVVTT-------IPTIGFNVETVTYKNLKFQVWDLGGQTS---------I-RPYWRCYY 64 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcCc-------CCccCcCeEEEEECCEEEEEEECCCCHH---------H-HHHHHHHh
Confidence 68999999999999999977665321 1232322222333456889999999851 1 22334567
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHh-----hcCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-----DSVP 156 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-----~~i~ 156 (772)
..+|++|+.+...+...... ..+.+.+. ++-....+.|+++|+||.|....... ..+.+.+...+ ..+.
T Consensus 65 ~~~~~ii~v~d~~~~~~~~~----~~~~~~~~-~~~~~~~~~piiiv~nK~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~ 138 (158)
T cd04151 65 SNTDAIIYVVDSTDRDRLGT----AKEELHAM-LEEEELKGAVLLVFANKQDMPGALSE-AEISEKLGLSELKDRTWSIF 138 (158)
T ss_pred cCCCEEEEEEECCCHHHHHH----HHHHHHHH-HhchhhcCCcEEEEEeCCCCCCCCCH-HHHHHHhCccccCCCcEEEE
Confidence 78999988765433211110 11111111 11111146899999999997532211 12222221111 1478
Q ss_pred CCCCccCCCchhhHHHHH
Q 004126 157 KPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~ 174 (772)
+.|+..+.+++++|+...
T Consensus 139 ~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 139 KTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred EeeccCCCCHHHHHHHHh
Confidence 899999999999998754
No 96
>PTZ00258 GTP-binding protein; Provisional
Probab=98.93 E-value=3.2e-09 Score=118.59 Aligned_cols=85 Identities=19% Similarity=0.013 Sum_probs=66.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC-----------------CCcEEEEecCCCCCcC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI-----------------EPCTLIMDLEGTDGRE 64 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~-----------------~~qil~lDteG~~s~e 64 (772)
|+|||+||||||||+|+|.|.+..+ + ..|.||+....|.++.+ ..|+.|+||||+....
T Consensus 24 vgIVG~PNvGKSTLfnaLt~~~~~v-~---n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 24 MGIVGLPNVGKSTTFNALCKQQVPA-E---NFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred EEEECCCCCChHHHHHHHhcCcccc-c---CCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 7899999999999999999988643 3 47999999999998765 3479999999998222
Q ss_pred CCCCccHHHHHHHHHHhhcccEEEEeecc
Q 004126 65 RGEDDTAFEKQSALFALAVSDIVLINMWC 93 (772)
Q Consensus 65 r~e~~~~fe~k~alfALa~sDvliiNl~~ 93 (772)
. + ..-+....+..+..+|++|+.+.+
T Consensus 100 ~-~--g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 100 S-E--GEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred c-c--hhHHHHHHHHHHHHCCEEEEEEeC
Confidence 1 1 223444567788999999988876
No 97
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.92 E-value=1.7e-08 Score=97.62 Aligned_cols=155 Identities=11% Similarity=-0.004 Sum_probs=88.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|.+|+|||||+|++....|. + ....|+...+.-...... ..+-++||||.+. -+ .++ -.
T Consensus 4 i~~~G~~~~GKTsli~~~~~~~~~--~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~------~~~---~~ 68 (164)
T cd04175 4 LVVLGSGGVGKSALTVQFVQGIFV--E---KYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-FT------AMR---DL 68 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCC--c---ccCCcchheEEEEEEECCEEEEEEEEECCCccc-ch------hHH---HH
Confidence 689999999999999999876663 1 234566554432222222 3455899999751 11 112 22
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH-HHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP-VLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~-~l~~~l~~iw~~i~kp 158 (772)
.+..+|++++.....+.. ...-++...+..+......+.|+++|.||+|+.+...+.. ...+..+..-..+.+.
T Consensus 69 ~~~~~d~~ilv~d~~~~~-----s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (164)
T cd04175 69 YMKNGQGFVLVYSITAQS-----TFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLET 143 (164)
T ss_pred HHhhCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEe
Confidence 345677776654332221 1111221111112222235789999999999865433321 1122222221246788
Q ss_pred CCccCCCchhhHHHHHhh
Q 004126 159 QAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~ 176 (772)
|+.++.+++++|......
T Consensus 144 Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 144 SAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999877654
No 98
>PLN03118 Rab family protein; Provisional
Probab=98.92 E-value=1.1e-08 Score=104.44 Aligned_cols=174 Identities=13% Similarity=0.104 Sum_probs=100.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEe--cCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC--AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~--~~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+..|...+ +.++........ .....++.++||||.. + | ......
T Consensus 17 v~ivG~~~vGKTsli~~l~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---~------~-~~~~~~ 81 (211)
T PLN03118 17 ILLIGDSGVGKSSLLVSFISSSVEDLA-----PTIGVDFKIKQLTVGGKRLKLTIWDTAGQE---R------F-RTLTSS 81 (211)
T ss_pred EEEECcCCCCHHHHHHHHHhCCCCCcC-----CCceeEEEEEEEEECCEEEEEEEEECCCch---h------h-HHHHHH
Confidence 689999999999999999999886443 222222222211 2223578999999964 1 1 112234
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC-CCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPK 157 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~-~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~k 157 (772)
.+..+|++|+.+...+.. ...-+.......+.++.. ...|+++|.||.|+.+...+. +...+......-.+.+
T Consensus 82 ~~~~~d~~vlv~D~~~~~-----sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e 156 (211)
T PLN03118 82 YYRNAQGIILVYDVTRRE-----TFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLE 156 (211)
T ss_pred HHhcCCEEEEEEECCCHH-----HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEE
Confidence 567889987765432211 111122222222333332 457889999999975443332 1111222222223567
Q ss_pred CCCccCCCchhhHHHHHhhcCCCccchhHHHHHHHHHHhhh
Q 004126 158 PQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRF 198 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~Lph~~~~~~~F~~~v~~Lr~~f 198 (772)
.|+..+.+++++|+.....+.+. +..+.+....+++..
T Consensus 157 ~SAk~~~~v~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~ 194 (211)
T PLN03118 157 CSAKTRENVEQCFEELALKIMEV---PSLLEEGSTAVKRNI 194 (211)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh---hhhhhcccccccccc
Confidence 89999999999999988777553 234444444444433
No 99
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.92 E-value=2.1e-08 Score=101.25 Aligned_cols=157 Identities=10% Similarity=0.074 Sum_probs=96.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|.+|+|||||+|++.+.+|.- ...+|+...........+ ..+.++||||...- ..++ ..
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~---~~ 66 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDTFEP-----KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSF-------PAMR---KL 66 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCc-----cCCCchhhheeEEEEECCEEEEEEEEECCCchhh-------hHHH---HH
Confidence 6899999999999999999988752 245666544332222222 46789999996511 1122 23
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh-hchHH-HHHHHHHHHhh-cCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL-ENLEP-VLREDIQKIWD-SVP 156 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~-e~l~~-~l~~~l~~iw~-~i~ 156 (772)
.+..+|++|+.+...+. ....-++..++...........|+++|+||+|..+. ..+.. ...+....-|. .+.
T Consensus 67 ~~~~ad~vilv~d~~~~-----~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~ 141 (198)
T cd04147 67 SIQNSDAFALVYAVDDP-----ESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFV 141 (198)
T ss_pred HhhcCCEEEEEEECCCH-----HHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEE
Confidence 56789999886654331 122223333322223333357899999999998653 32221 11122211243 356
Q ss_pred CCCCccCCCchhhHHHHHhhcC
Q 004126 157 KPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
..++..+.+++++|+.....++
T Consensus 142 ~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 142 ETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred EecCCCCCCHHHHHHHHHHHhh
Confidence 7899999999999998877654
No 100
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.91 E-value=1.2e-08 Score=100.37 Aligned_cols=154 Identities=11% Similarity=0.069 Sum_probs=89.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|+|.+|+|||||+|++.+.+|.... .-|+.......... ....+.++||||.. + | +.....
T Consensus 4 v~l~G~~g~GKTtl~~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~---~------~-~~~~~~ 68 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEGHFVESY-----YPTIENTFSKIIRYKGQDYHLEIVDTAGQD---E------Y-SILPQK 68 (180)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCcccc-----CcchhhhEEEEEEECCEEEEEEEEECCChH---h------h-HHHHHH
Confidence 689999999999999999998875321 22333222222222 23467899999964 1 1 112223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH-HHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP-VLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~-~l~~~l~~iw~~i~kp 158 (772)
.+..+|.+++.....+. .....++.+.+..++.......|+++|+||.|....+.+.. .+..........+.+.
T Consensus 69 ~~~~~~~~i~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (180)
T cd04137 69 YSIGIHGYILVYSVTSR-----KSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLES 143 (180)
T ss_pred HHhhCCEEEEEEECCCH-----HHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEE
Confidence 45577777664433321 12223333333333333445678999999999753332221 1222222222346788
Q ss_pred CCccCCCchhhHHHHHh
Q 004126 159 QAHMETPLSEFFNVEVV 175 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~ 175 (772)
|+..+.++.++|.....
T Consensus 144 Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 144 SARENENVEEAFELLIE 160 (180)
T ss_pred eCCCCCCHHHHHHHHHH
Confidence 99999999999987654
No 101
>PRK12736 elongation factor Tu; Reviewed
Probab=98.91 E-value=9.9e-09 Score=115.15 Aligned_cols=157 Identities=15% Similarity=0.079 Sum_probs=95.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCC-------e---eeecCC--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN-------F---REMDAF--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDD 69 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk-------f---sims~~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~ 69 (772)
|+|+|..++|||||+++|.|.. + ++++.. .....+|...-.......+.++.|+|||| |
T Consensus 15 i~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPG-h-------- 85 (394)
T PRK12736 15 IGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPG-H-------- 85 (394)
T ss_pred EEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCC-H--------
Confidence 7899999999999999999842 1 223321 11344555554333444567899999999 4
Q ss_pred cHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCcc-EEEEEeCCCCCChhchHH----HH
Q 004126 70 TAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LMFVIRDKTRTPLENLEP----VL 144 (772)
Q Consensus 70 ~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~-llfVIrd~d~t~~e~l~~----~l 144 (772)
.+|.. ....+++.+|++|+.+...+ |. .......+..+.. ...| +++|+||+|+.+.+.+.+ .+
T Consensus 86 ~~f~~-~~~~~~~~~d~~llVvd~~~-g~-~~~t~~~~~~~~~--------~g~~~~IvviNK~D~~~~~~~~~~i~~~i 154 (394)
T PRK12736 86 ADYVK-NMITGAAQMDGAILVVAATD-GP-MPQTREHILLARQ--------VGVPYLVVFLNKVDLVDDEELLELVEMEV 154 (394)
T ss_pred HHHHH-HHHHHHhhCCEEEEEEECCC-CC-chhHHHHHHHHHH--------cCCCEEEEEEEecCCcchHHHHHHHHHHH
Confidence 24543 44777889999998776532 21 1223334444433 3455 788999999875444333 33
Q ss_pred HHHHHHH-h----hcCCCCCCccCC--------CchhhHHHHHhhcC
Q 004126 145 REDIQKI-W----DSVPKPQAHMET--------PLSEFFNVEVVALS 178 (772)
Q Consensus 145 ~~~l~~i-w----~~i~kpsa~~~~--------~l~dlf~~~~~~Lp 178 (772)
.+.+..+ | ..+.+.|++.+. ++.++++.....+|
T Consensus 155 ~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 155 RELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 4444333 3 246677887763 34555555555554
No 102
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.91 E-value=1.4e-08 Score=101.79 Aligned_cols=156 Identities=11% Similarity=0.046 Sum_probs=89.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccc-eee-Ee--cCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-WMA-RC--AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGi-w~~-i~--~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|+|.+|||||||+|++.+.+|..-. ...|.+. ... .. .....++-++||||-. . .+...
T Consensus 3 i~vvG~~~vGKTSli~~~~~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~-~~~~~ 67 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGAFLNGN-----FIATVGIDFRNKVVTVDGVKVKLQIWDTAGQE---------R-FRSVT 67 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCccC-----cCCcccceeEEEEEEECCEEEEEEEEeCCCcH---------H-HHHhh
Confidence 689999999999999999998886422 1222221 111 11 1223578899999942 1 12223
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~ 156 (772)
...+..+|++|+.+...+.. ...-+....+. +.-..+...|+++|.||.|+.+..... ..........-..+.
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~-----s~~~~~~~~~~-i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 141 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKA-----SFDNIRAWLTE-IKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFM 141 (191)
T ss_pred HHHccCCCEEEEEEECCCHH-----HHHHHHHHHHH-HHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEE
Confidence 34467899987766442211 11111111111 111223578999999999975332222 111111111111466
Q ss_pred CCCCccCCCchhhHHHHHhhcC
Q 004126 157 KPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
+.|+..+.+++++|+.....++
T Consensus 142 e~Sa~~~~~v~~l~~~l~~~~~ 163 (191)
T cd04112 142 ETSAKTGLNVELAFTAVAKELK 163 (191)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999998876654
No 103
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.91 E-value=7.7e-09 Score=114.48 Aligned_cols=85 Identities=19% Similarity=0.123 Sum_probs=66.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC-----------------CcEEEEecCCCCCcC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE-----------------PCTLIMDLEGTDGRE 64 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~-----------------~qil~lDteG~~s~e 64 (772)
|+|||+||+|||||+|+|.|.+. .++ ..|.||+....|+...++ .++.++||||+....
T Consensus 5 vgIVG~PNvGKSTLfnaLt~~~~-~v~---nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 5 CGIVGLPNVGKSTLFNALTKAGA-EAA---NYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC-eec---ccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 78999999999999999999994 444 479999999999888655 369999999997322
Q ss_pred CCCCccHHHHHHHHHHhhcccEEEEeecc
Q 004126 65 RGEDDTAFEKQSALFALAVSDIVLINMWC 93 (772)
Q Consensus 65 r~e~~~~fe~k~alfALa~sDvliiNl~~ 93 (772)
. + +.-+....+..+..+|++|..+.+
T Consensus 81 ~-~--g~glg~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 81 S-K--GEGLGNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred C-h--HHHHHHHHHHHHHhCCEEEEEEeC
Confidence 1 1 223344567778999999888776
No 104
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.90 E-value=9.1e-09 Score=99.73 Aligned_cols=152 Identities=11% Similarity=0.038 Sum_probs=89.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCccc--ceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKG--IWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrG--iw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|+++|.+|+|||||+|+|.+..+.. ....|-| ......... ...+.+.||||.. .+. ...
T Consensus 10 v~v~G~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~-~~~ 73 (169)
T cd04114 10 IVLIGNAGVGKTCLVRRFTQGLFPP------GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE---------RFR-SIT 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC------CCCCceeeEEEEEEEEECCEEEEEEEEECCCcH---------HHH-HHH
Confidence 6899999999999999999876642 1222222 222222222 2457889999953 111 122
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i~ 156 (772)
...+..+|++++.+.. .. +....-+....+. +..+...+.|+++|.||.|..+...+...+.+.+.+. ...+.
T Consensus 74 ~~~~~~~d~~i~v~d~---~~--~~s~~~~~~~~~~-l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~ 147 (169)
T cd04114 74 QSYYRSANALILTYDI---TC--EESFRCLPEWLRE-IEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYL 147 (169)
T ss_pred HHHhcCCCEEEEEEEC---cC--HHHHHHHHHHHHH-HHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEE
Confidence 3467889998876543 21 1111111111111 1122235688899999999764444433333334333 33467
Q ss_pred CCCCccCCCchhhHHHHHh
Q 004126 157 KPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~ 175 (772)
+.|+..+.++.++|+....
T Consensus 148 ~~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 148 ETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred EeeCCCCCCHHHHHHHHHH
Confidence 8899999999999987654
No 105
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.90 E-value=1.4e-08 Score=98.51 Aligned_cols=154 Identities=16% Similarity=0.082 Sum_probs=89.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCccc--ceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKG--IWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrG--iw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|+|.+|||||||+|++.+.+|.... .+|-| ....... ....++-++||||.. + | ....
T Consensus 5 i~i~G~~~vGKSsli~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~---~------~-~~~~ 68 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADDTYTESY------ISTIGVDFKIRTIELDGKTIKLQIWDTAGQE---R------F-RTIT 68 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCC------CCccceeEEEEEEEECCEEEEEEEEECCCcH---h------H-HHHH
Confidence 679999999999999999998886521 12222 1111111 123578899999943 1 1 1233
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~ 156 (772)
...+..+|++|+.....+.. ...-+...++.. +-+...+.|+++|.||.|......+. +...+......-.+.
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~-----s~~~l~~~~~~~-~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQE-----SFNNVKQWLQEI-DRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFL 142 (166)
T ss_pred HHHhCcCCEEEEEEECcCHH-----HHHhHHHHHHHH-HHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEE
Confidence 34457899998765443311 111122222211 11222467899999999975433332 222222222222467
Q ss_pred CCCCccCCCchhhHHHHHhhc
Q 004126 157 KPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~L 177 (772)
+.|+..+.+++++|+.....+
T Consensus 143 ~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 143 ETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred EEECCCCcCHHHHHHHHHHHH
Confidence 789999999999998766543
No 106
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.90 E-value=3.6e-09 Score=113.30 Aligned_cols=85 Identities=16% Similarity=0.043 Sum_probs=65.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCC-----------------cEEEEecCCCCCcC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEP-----------------CTLIMDLEGTDGRE 64 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~-----------------qil~lDteG~~s~e 64 (772)
|+|||+||||||||+|+|.|.+..+ + ..|.||+....|+....+. ++.++||||+....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~-~---n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a 76 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA-A---NYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 76 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc-c---cccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCC
Confidence 5899999999999999999999843 3 4799999999999887553 69999999998222
Q ss_pred CCCCccHHHHHHHHHHhhcccEEEEeecc
Q 004126 65 RGEDDTAFEKQSALFALAVSDIVLINMWC 93 (772)
Q Consensus 65 r~e~~~~fe~k~alfALa~sDvliiNl~~ 93 (772)
. . +.-+....+..+..+|+++..+.+
T Consensus 77 ~-~--~~glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 77 S-K--GEGLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred c-h--hhHHHHHHHHHHHhCCEEEEEEeC
Confidence 1 1 122223456678899999988865
No 107
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.90 E-value=1.3e-08 Score=97.73 Aligned_cols=150 Identities=15% Similarity=0.077 Sum_probs=89.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|.+|||||||+|++.|.++.-. -+|-|+-..........+.++||||...- +......+
T Consensus 2 i~iiG~~~~GKssli~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~~~~ 64 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGEVVTT-------IPTIGFNVETVEYKNVSFTVWDVGGQDKI----------RPLWKHYY 64 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCC-------CCCcCcceEEEEECCEEEEEEECCCChhh----------HHHHHHHh
Confidence 68999999999999999999985321 22333322223334678999999996411 11234456
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh---chHHHHHHH--HHHHhhcCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE---NLEPVLRED--IQKIWDSVP 156 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e---~l~~~l~~~--l~~iw~~i~ 156 (772)
..+|++++.+...+...... ....+..+++ .......|+++|.||.|..... .+.+.+... ....| .+.
T Consensus 65 ~~~~~~i~v~D~~~~~~~~~-~~~~~~~~~~----~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 138 (158)
T cd00878 65 ENTNGIIFVVDSSDRERIEE-AKEELHKLLN----EEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRW-HIQ 138 (158)
T ss_pred ccCCEEEEEEECCCHHHHHH-HHHHHHHHHh----CcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcE-EEE
Confidence 78999988665433211110 0111222211 1112578999999999976433 232222211 00112 366
Q ss_pred CCCCccCCCchhhHHHHH
Q 004126 157 KPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~ 174 (772)
+.|+..+.+++++|+...
T Consensus 139 ~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 139 PCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred EeeCCCCCCHHHHHHHHh
Confidence 789999999999987653
No 108
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.90 E-value=8.2e-09 Score=98.99 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=88.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.+|||||||+|+|.+..+..- ....|-|.-..........+-++||||... + +......+
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~~~~~-----~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~---------~-~~~~~~~~ 66 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPENAQSQ-----IIVPTVGFNVESFEKGNLSFTAFDMSGQGK---------Y-RGLWEHYY 66 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccCCCcc-----eecCccccceEEEEECCEEEEEEECCCCHh---------h-HHHHHHHH
Confidence 68999999999999999999754321 122333433333333456788999999641 1 11223446
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHh--hcCCCCccEEEEEeCCCCCChhchHHHHHHHHH--HH----hh
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMR--LFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ--KI----WD 153 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~--lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~--~i----w~ 153 (772)
..+|++|+.+...+.. .+..++.-++..++ -+...+.|+++|+||.|..+..... .+.+.+. .+ |
T Consensus 67 ~~~d~ii~v~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~-~~~~~l~~~~~~~~~~- 139 (162)
T cd04157 67 KNIQGIIFVIDSSDRL-----RLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAV-KITQLLGLENIKDKPW- 139 (162)
T ss_pred ccCCEEEEEEeCCcHH-----HHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHH-HHHHHhCCccccCceE-
Confidence 7899998876553322 11111111111111 1122578999999999975432211 1222111 11 2
Q ss_pred cCCCCCCccCCCchhhHHHHH
Q 004126 154 SVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~ 174 (772)
.+.+.|+..+.+++++|+...
T Consensus 140 ~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 140 HIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred EEEEeeCCCCCchHHHHHHHh
Confidence 256788999999999998653
No 109
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.89 E-value=1.3e-08 Score=93.24 Aligned_cols=149 Identities=15% Similarity=0.051 Sum_probs=88.0
Q ss_pred EeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC----CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 4 IFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI----EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 4 IvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~----~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|.+|+|||||+|+|+|..... ...++|. +........ ..++.++||||..... . ....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-----~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~---------~~~~ 64 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-----EEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-S---------LRRL 64 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-----cccccch-hheeeEEEEECCEEEEEEEEecCChHHHH-h---------HHHH
Confidence 68999999999999999988741 2344554 443333322 5689999999976211 1 1144
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHH-HHHHHHH-hhcCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL-REDIQKI-WDSVPK 157 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l-~~~l~~i-w~~i~k 157 (772)
.+..+|++++.+...+. ....-+.......+......++|+++|+||.|..+.+...... ....... -..+.+
T Consensus 65 ~~~~~~~~i~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (157)
T cd00882 65 YYRGADGIILVYDVTDR-----ESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFE 139 (157)
T ss_pred HhcCCCEEEEEEECcCH-----HHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEE
Confidence 55788888776654221 1111111111112223334789999999999986554433221 1111111 123566
Q ss_pred CCCccCCCchhhHHHH
Q 004126 158 PQAHMETPLSEFFNVE 173 (772)
Q Consensus 158 psa~~~~~l~dlf~~~ 173 (772)
.++..+.++.++++..
T Consensus 140 ~s~~~~~~i~~~~~~l 155 (157)
T cd00882 140 TSAKTGENVEELFEEL 155 (157)
T ss_pred EecCCCCChHHHHHHH
Confidence 7888888888888754
No 110
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.89 E-value=2.5e-08 Score=96.08 Aligned_cols=156 Identities=17% Similarity=0.047 Sum_probs=89.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+++|||||+|+|.+.++..... +..++......-........+.++||||.. + | .......+
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~---~------~-~~~~~~~~ 70 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENKFKEDSQ--HTIGVEFGSKIIRVGGKRVKLQIWDTAGQE---R------F-RSVTRSYY 70 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeeEEEEEEEECCEEEEEEEEECcchH---H------H-HHhHHHHh
Confidence 6899999999999999999988864321 111111111111122223467899999963 1 1 11233445
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhch-HHHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL-EPVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l-~~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.....+.. ...-+...++. ++.+.....|+++|.||+|..+.... .+..........-.+...|+
T Consensus 71 ~~~~~~i~v~d~~~~~-----s~~~~~~~~~~-~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (161)
T cd04113 71 RGAAGALLVYDITNRT-----SFEALPTWLSD-ARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSA 144 (161)
T ss_pred cCCCEEEEEEECCCHH-----HHHHHHHHHHH-HHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEEC
Confidence 7889887755443321 11112222221 12222357889999999997543222 12222222222234778899
Q ss_pred ccCCCchhhHHHHHh
Q 004126 161 HMETPLSEFFNVEVV 175 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~ 175 (772)
..+.+++++|+....
T Consensus 145 ~~~~~i~~~~~~~~~ 159 (161)
T cd04113 145 LTGENVEEAFLKCAR 159 (161)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999987654
No 111
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.89 E-value=1.2e-08 Score=99.36 Aligned_cols=154 Identities=13% Similarity=0.002 Sum_probs=91.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceee---E-ecCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---R-CAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~---i-~~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.++|++|+|||||+|++.+.+|.. ..++|-|.-.. + .......+.+.||||.. .+. ...
T Consensus 6 i~vvG~~~~GKSsl~~~~~~~~f~~------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~---------~~~-~~~ 69 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSEDSFNP------SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE---------RFR-TIT 69 (167)
T ss_pred EEEECCCCCCHHHHHHHHhhCcCCc------ccccCccceEEEEEEEECCEEEEEEEEeCCchH---------HHH-HHH
Confidence 6899999999999999999998863 23344443211 1 11223467899999943 111 123
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~ 156 (772)
...+..+|++|+.....+.. ...-++...+...+ +...+.|+++|.+|.|+....... +...+......-.+.
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~-----s~~~~~~~~~~i~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEK-----SFENIRNWMRNIEE-HASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFL 143 (167)
T ss_pred HHHhCCCCEEEEEEECcCHH-----HHHhHHHHHHHHHH-hCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 34567899998866543321 11122222221111 223578999999999975332221 222233322222467
Q ss_pred CCCCccCCCchhhHHHHHhhc
Q 004126 157 KPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~L 177 (772)
+.|+..+.++.++|+.....+
T Consensus 144 ~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 144 ETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 889999999999998766543
No 112
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.88 E-value=1.6e-08 Score=110.53 Aligned_cols=168 Identities=17% Similarity=0.030 Sum_probs=106.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC------------------------CCCcEEEEec
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG------------------------IEPCTLIMDL 57 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~------------------------~~~qil~lDt 57 (772)
|+|||.||||||||+|+|.+.++.+ + ..|=||+....|.... ...++-++||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~-~---~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~ 76 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEI-A---NYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDV 76 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcc-c---CCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEEC
Confidence 5899999999999999999998754 3 3567998888776653 1247899999
Q ss_pred CCCC-CcCCCCCccHHHHHHHHHHhhcccEEEEeeccccc------cccccCC-----HHHH------------------
Q 004126 58 EGTD-GRERGEDDTAFEKQSALFALAVSDIVLINMWCHDI------GREQAAN-----KPLL------------------ 107 (772)
Q Consensus 58 eG~~-s~er~e~~~~fe~k~alfALa~sDvliiNl~~~di------g~~~~~n-----~~lL------------------ 107 (772)
||+. |.+++ .-+....+..+..||++++.+.+.+- +...+.. ...+
T Consensus 77 aGlv~ga~~~----~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~ 152 (318)
T cd01899 77 AGLVPGAHEG----KGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEK 152 (318)
T ss_pred CCCCCCccch----hhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9995 22222 11333456678999999988876421 1111110 0000
Q ss_pred ---------------------------HHHHHHH------Hh--------------hcCCCCccEEEEEeCCCCCChhch
Q 004126 108 ---------------------------KTVFQVM------MR--------------LFSPRKTTLMFVIRDKTRTPLENL 140 (772)
Q Consensus 108 ---------------------------ktv~evn------l~--------------lf~~~k~~llfVIrd~d~t~~e~l 140 (772)
+.|.++. .+ +|....+|+++|+|+.|....+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~ 232 (318)
T cd01899 153 IVRKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN 232 (318)
T ss_pred HHHHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH
Confidence 0011100 00 000136899999999997543433
Q ss_pred HHHHHHHHHHHhhcCCCCCCccCCCchhhHH-HHHhhcCC
Q 004126 141 EPVLREDIQKIWDSVPKPQAHMETPLSEFFN-VEVVALSS 179 (772)
Q Consensus 141 ~~~l~~~l~~iw~~i~kpsa~~~~~l~dlf~-~~~~~Lph 179 (772)
.+.+... .-+..+.+.|+..+.++.++.+ ....+||.
T Consensus 233 ~~~l~~~--~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 233 ISKLRLK--YPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred HHHHHhh--CCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 3333221 1266788999999999999998 58888874
No 113
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.88 E-value=2.8e-08 Score=97.56 Aligned_cols=149 Identities=16% Similarity=0.129 Sum_probs=87.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|+++||||||+|+|+|..+..+. .|.|.-..........+.++||||... + +......+
T Consensus 17 v~ivG~~~~GKTsL~~~l~~~~~~~~~-------~t~g~~~~~~~~~~~~l~l~D~~G~~~---------~-~~~~~~~~ 79 (173)
T cd04154 17 ILILGLDNAGKTTILKKLLGEDIDTIS-------PTLGFQIKTLEYEGYKLNIWDVGGQKT---------L-RPYWRNYF 79 (173)
T ss_pred EEEECCCCCCHHHHHHHHccCCCCCcC-------CccccceEEEEECCEEEEEEECCCCHH---------H-HHHHHHHh
Confidence 689999999999999999998664332 233322222222356789999999641 1 12233446
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHH------HhhcC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK------IWDSV 155 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~------iw~~i 155 (772)
..+|++++.+...+...... ....+.++ ++.......|+++|+||.|...... .+.+.+.+.. .| .+
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~----~~~~~~~~-~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~-~~ 152 (173)
T cd04154 80 ESTDALIWVVDSSDRLRLDD----CKRELKEL-LQEERLAGATLLILANKQDLPGALS-EEEIREALELDKISSHHW-RI 152 (173)
T ss_pred CCCCEEEEEEECCCHHHHHH----HHHHHHHH-HhChhhcCCCEEEEEECcccccCCC-HHHHHHHhCccccCCCce-EE
Confidence 78999987665433221111 11111111 1111115689999999999753221 1222222211 12 36
Q ss_pred CCCCCccCCCchhhHHHHH
Q 004126 156 PKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~ 174 (772)
.+.|+..+.+++++|+...
T Consensus 153 ~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 153 QPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred EeccCCCCcCHHHHHHHHh
Confidence 7889999999999997653
No 114
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.87 E-value=4.6e-08 Score=94.33 Aligned_cols=151 Identities=11% Similarity=0.030 Sum_probs=88.8
Q ss_pred EEEeCCCCCChHHHHhHHhCC--CeeeecCCCCCCCCcccceee-----EecCCCCcEEEEecCCCCCcCCCCCccHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT--NFREMDAFKGRSQTTKGIWMA-----RCAGIEPCTLIMDLEGTDGRERGEDDTAFEK 74 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt--kfsims~~~~r~QTTrGiw~~-----i~~~~~~qil~lDteG~~s~er~e~~~~fe~ 74 (772)
|.++|.++||||||+|+|.+. .|. +....|.|.-.. .......++.++||||.. .+ .
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~-~ 66 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFP------KNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE---------LY-S 66 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcC------ccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH---------HH-H
Confidence 689999999999999999854 453 122334443221 112344789999999952 11 1
Q ss_pred HHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHH-HHHhh
Q 004126 75 QSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI-QKIWD 153 (772)
Q Consensus 75 k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l-~~iw~ 153 (772)
......+..+|++++.....+...+. .-...+..+.+ . ....|+++|+||.|..+...+.....+.+ ....-
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~----~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 139 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFE-NCSRWVNKVRT----A--SKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQL 139 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHH-HHHHHHHHHHH----h--CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC
Confidence 22344568899998765432211000 00111122221 1 14689999999999865544433221222 22233
Q ss_pred cCCCCCCccCCCchhhHHHHHh
Q 004126 154 SVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
.+...|+..+.+++++|+....
T Consensus 140 ~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 140 KFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred eEEEEeCCCCCChHHHHHHHHH
Confidence 4668899999999999987654
No 115
>PRK12735 elongation factor Tu; Reviewed
Probab=98.87 E-value=1.9e-08 Score=112.95 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=83.2
Q ss_pred EEEeCCCCCChHHHHhHHhCC-------Ce---eeecCC--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT-------NF---REMDAF--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDD 69 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt-------kf---sims~~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~ 69 (772)
|+|+|.+++|||||+|+|.+. ++ +.++.. .....+|...-......++.++.|+||||..
T Consensus 15 i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~-------- 86 (396)
T PRK12735 15 VGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA-------- 86 (396)
T ss_pred EEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH--------
Confidence 789999999999999999973 22 122211 0122333333222234456799999999952
Q ss_pred cHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCcc-EEEEEeCCCCCChhchHH----HH
Q 004126 70 TAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LMFVIRDKTRTPLENLEP----VL 144 (772)
Q Consensus 70 ~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~-llfVIrd~d~t~~e~l~~----~l 144 (772)
+|. +.+..+++.+|++++.+...+ |- .+.....+..+.. ...| +++|+||+|+.+.+.+.+ .+
T Consensus 87 -~f~-~~~~~~~~~aD~~llVvda~~-g~-~~qt~e~l~~~~~--------~gi~~iivvvNK~Dl~~~~~~~~~~~~ei 154 (396)
T PRK12735 87 -DYV-KNMITGAAQMDGAILVVSAAD-GP-MPQTREHILLARQ--------VGVPYIVVFLNKCDMVDDEELLELVEMEV 154 (396)
T ss_pred -HHH-HHHHhhhccCCEEEEEEECCC-CC-chhHHHHHHHHHH--------cCCCeEEEEEEecCCcchHHHHHHHHHHH
Confidence 333 566788899999988776533 21 1122223333322 3455 556899999875443333 33
Q ss_pred HHHHHHH-h----hcCCCCCCccCC
Q 004126 145 REDIQKI-W----DSVPKPQAHMET 164 (772)
Q Consensus 145 ~~~l~~i-w----~~i~kpsa~~~~ 164 (772)
...+..+ | -.+.+.|+..+.
T Consensus 155 ~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (396)
T PRK12735 155 RELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred HHHHHHcCCCcCceeEEecchhccc
Confidence 3333322 2 235677777764
No 116
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.86 E-value=3.1e-08 Score=96.42 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=89.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|.+|||||||+|++.+.+|...-. ..-+++++... ........+.+.||||... . .. ....++
T Consensus 4 v~~vG~~~vGKTsli~~~~~~~f~~~~~-~t~~~~~~~~~--~~~~~~~~l~i~Dt~G~~~---~----~~---~~~~~~ 70 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVKGTFRESYI-PTIEDTYRQVI--SCSKNICTLQITDTTGSHQ---F----PA---MQRLSI 70 (165)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCcC-CcchheEEEEE--EECCEEEEEEEEECCCCCc---c----hH---HHHHHh
Confidence 7899999999999999999998853211 01122332211 1122335678999999751 1 11 223445
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh-cCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD-SVPKP 158 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~-~i~kp 158 (772)
..+|++|+.....+. ....-++...+.-.++.. ..+.|+++|.||.|+.+...+..........-|. .+.+.
T Consensus 71 ~~~~~~ilv~d~~~~-----~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 145 (165)
T cd04140 71 SKGHAFILVYSVTSK-----QSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMET 145 (165)
T ss_pred hcCCEEEEEEECCCH-----HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEe
Confidence 678888775543221 112223333332222222 2568999999999986533333211111112232 35678
Q ss_pred CCccCCCchhhHHHHH
Q 004126 159 QAHMETPLSEFFNVEV 174 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~ 174 (772)
|+..+.+++++|+-..
T Consensus 146 SA~~g~~v~~~f~~l~ 161 (165)
T cd04140 146 SAKTNHNVQELFQELL 161 (165)
T ss_pred ecCCCCCHHHHHHHHH
Confidence 9999999999998754
No 117
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.85 E-value=1.9e-08 Score=106.38 Aligned_cols=125 Identities=20% Similarity=0.180 Sum_probs=76.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH-
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA- 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA- 80 (772)
|.++|++|+|||||+|+|+|.....++. .+-+|+.+.+...+.....+.|+||||+.....+ .+..+.++..
T Consensus 34 IllvG~tGvGKSSliNaLlg~~~~~v~~---~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~----~~~~~~~~~~I 106 (249)
T cd01853 34 ILVLGKTGVGKSSTINSIFGERKAATSA---FQSETLRVREVSGTVDGFKLNIIDTPGLLESVMD----QRVNRKILSSI 106 (249)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCcccCC---CCCceEEEEEEEEEECCeEEEEEECCCcCcchhh----HHHHHHHHHHH
Confidence 6899999999999999999998877663 3346676666665556678999999999844211 1111122222
Q ss_pred ---hh--cccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC-CCccEEEEEeCCCCCChh
Q 004126 81 ---LA--VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTPLE 138 (772)
Q Consensus 81 ---La--~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~-~k~~llfVIrd~d~t~~e 138 (772)
+. ..|++++..-. |..+.......+++.+.+ .|++ .-..+++|++.+|..|.+
T Consensus 107 ~~~l~~~~idvIL~V~rl-D~~r~~~~d~~llk~I~e----~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRL-DMYRRDYLDLPLLRAITD----SFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHhccCCCEEEEEEcC-CCCCCCHHHHHHHHHHHH----HhChhhHhCEEEEEeCCccCCCC
Confidence 22 46766543221 222222233345555544 4553 224588899999765444
No 118
>COG2262 HflX GTPases [General function prediction only]
Probab=98.85 E-value=1e-08 Score=113.26 Aligned_cols=156 Identities=21% Similarity=0.153 Sum_probs=103.7
Q ss_pred EEEeCCCCCChHHHHhHHhCC-------CeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT-------NFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEK 74 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt-------kfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~ 74 (772)
|++||..|+|||||+|.|.|. -|+++++ |||-+-++- ..++++-||=|+-..=-..+-..|
T Consensus 195 vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdp------ttR~~~l~~----g~~vlLtDTVGFI~~LP~~LV~AF-- 262 (411)
T COG2262 195 VALVGYTNAGKSTLFNALTGADVYVADQLFATLDP------TTRRIELGD----GRKVLLTDTVGFIRDLPHPLVEAF-- 262 (411)
T ss_pred EEEEeeccccHHHHHHHHhccCeeccccccccccC------ceeEEEeCC----CceEEEecCccCcccCChHHHHHH--
Confidence 899999999999999999985 4666663 677665432 578999999998622111111122
Q ss_pred HHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhc
Q 004126 75 QSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 154 (772)
Q Consensus 75 k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~ 154 (772)
++.|.....||++|..++..+.. ...-++++.++.-.+ +...+|.+.|.||+|..+.+.....+..+. ..
T Consensus 263 ksTLEE~~~aDlllhVVDaSdp~-----~~~~~~~v~~vL~el-~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~----~~ 332 (411)
T COG2262 263 KSTLEEVKEADLLLHVVDASDPE-----ILEKLEAVEDVLAEI-GADEIPIILVLNKIDLLEDEEILAELERGS----PN 332 (411)
T ss_pred HHHHHHhhcCCEEEEEeecCChh-----HHHHHHHHHHHHHHc-CCCCCCEEEEEecccccCchhhhhhhhhcC----CC
Confidence 67888889999999888654431 111234444332222 224589999999999765544222222111 13
Q ss_pred CCCCCCccCCCchhhHHHHHhhcCC
Q 004126 155 VPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
.+..|+.++.+++.+.+.+...++.
T Consensus 333 ~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 333 PVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred eEEEEeccCcCHHHHHHHHHHHhhh
Confidence 5667999999999999998877763
No 119
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.6e-08 Score=117.62 Aligned_cols=157 Identities=17% Similarity=0.086 Sum_probs=109.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|.||||||||.|+|-|.+..|.+ =|-+|=..--|.......++-++|+||+.|-.-...|...-+ -|-+
T Consensus 6 valvGNPNvGKTtlFN~LTG~~q~VgN----wpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var---~~ll 78 (653)
T COG0370 6 VALVGNPNVGKTTLFNALTGANQKVGN----WPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVAR---DFLL 78 (653)
T ss_pred EEEecCCCccHHHHHHHHhccCceecC----CCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHH---HHHh
Confidence 799999999999999999999999865 578898888898888889999999999998775533222222 2334
Q ss_pred h-cccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHHhhcCCC
Q 004126 82 A-VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKIWDSVPK 157 (772)
Q Consensus 82 a-~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~iw~~i~k 157 (772)
. ..|+++-.++...+. .|..+.=.++| -..|+++++|.+|.....-++ +.|.+.+ =-.+.+
T Consensus 79 ~~~~D~ivnVvDAtnLe----RnLyltlQLlE--------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L---GvPVv~ 143 (653)
T COG0370 79 EGKPDLIVNVVDATNLE----RNLYLTLQLLE--------LGIPMILALNMIDEAKKRGIRIDIEKLSKLL---GVPVVP 143 (653)
T ss_pred cCCCCEEEEEcccchHH----HHHHHHHHHHH--------cCCCeEEEeccHhhHHhcCCcccHHHHHHHh---CCCEEE
Confidence 3 468775444332221 12222222333 567799999999976554433 2333322 335778
Q ss_pred CCCccCCCchhhHHHHHhhcCCC
Q 004126 158 PQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~Lph~ 180 (772)
.++.++.+++++.+.+...-+.+
T Consensus 144 tvA~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 144 TVAKRGEGLEELKRAIIELAESK 166 (653)
T ss_pred EEeecCCCHHHHHHHHHHhcccc
Confidence 89999999999999887654433
No 120
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.85 E-value=1.5e-08 Score=98.46 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=88.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCccc--ce--eeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKG--IW--MARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrG--iw--~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|+++|.++||||||+|++.+..|.. ..+.|.+ ++ .-........+-++||+|-. + | ....
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---~------~-~~~~ 66 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDGYEP------QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE---R------F-QTMH 66 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC------CcCCceeeEEEEEEEEECCEEEEEEEEeCCCch---h------h-hhhh
Confidence 6899999999999999999988853 2222322 21 11122223467799999954 1 1 1133
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 157 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~k 157 (772)
...+..+|++|+.+...+..... .-...+..+.+ .....|+++|.||.|+.+.. .....+..+.....+..
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~------~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 137 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYK-NLSKWYEELRE------YRPEIPCIVVANKIDLDPSV--TQKKFNFAEKHNLPLYY 137 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHH-HHHHHHHHHHH------hCCCCcEEEEEECccCchhH--HHHHHHHHHHcCCeEEE
Confidence 44577899998755432211000 00111222221 01368999999999975321 11111111122224667
Q ss_pred CCCccCCCchhhHHHHHhhcC
Q 004126 158 PQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~Lp 178 (772)
.|+..+.+++++|+.......
T Consensus 138 ~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 138 VSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999998775443
No 121
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.85 E-value=3.3e-08 Score=96.18 Aligned_cols=155 Identities=12% Similarity=0.014 Sum_probs=90.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccc---eeeEe-cCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGI---WMARC-AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGi---w~~i~-~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|+|.+|||||||+|++.+.+|..- -..|-|+ ...+. ......+.++||+|.. + + +...
T Consensus 4 i~i~G~~~~GKSsli~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~---~------~-~~~~ 67 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDSFTSA------FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE---R------Y-RTIT 67 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCC------CCCceeeEEEEEEEEECCEEEEEEEEECCChH---H------H-HHHH
Confidence 68999999999999999999998531 1122232 11221 1223578899999954 1 1 1223
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~ 156 (772)
...+..+|++++.....+.. ...-++...+...+ .....+|+++|.||+|+.+..... +...+..+...-.+.
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~-----s~~~~~~~~~~i~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEE-----SFNAVQDWSTQIKT-YSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFF 141 (165)
T ss_pred HHHccCCcEEEEEEECCCHH-----HHHHHHHHHHHHHH-hCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEE
Confidence 44567899888765443321 11111111111111 112467899999999986433221 122222222211467
Q ss_pred CCCCccCCCchhhHHHHHhhcC
Q 004126 157 KPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
+.|+..+.++.++|+.....++
T Consensus 142 ~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 142 EASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999998776544
No 122
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.84 E-value=1.5e-08 Score=97.98 Aligned_cols=150 Identities=14% Similarity=0.044 Sum_probs=86.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|++.+|.. ....|+.......... ....+.++||||....... ...
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~----------~~~ 67 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGKFPT-----EYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRL----------RPL 67 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC-----CCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc----------chh
Confidence 6899999999999999999998832 1223333333222222 2346889999997622111 112
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC--CCccEEEEEeCCCCCChhch------------HHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRTPLENL------------EPVLR 145 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~--~k~~llfVIrd~d~t~~e~l------------~~~l~ 145 (772)
.+..+|++++.....+.. + +....+..+..+.. ...|+++|.+|.|+.+.... .....
T Consensus 68 ~~~~~~~~i~v~d~~~~~----s----~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~ 139 (171)
T cd00157 68 SYPNTDVFLICFSVDSPS----S----FENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGE 139 (171)
T ss_pred hcCCCCEEEEEEECCCHH----H----HHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHH
Confidence 346789888766543221 1 11111111111111 36899999999986533321 11112
Q ss_pred HHHHHH-hhcCCCCCCccCCCchhhHHHHH
Q 004126 146 EDIQKI-WDSVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 146 ~~l~~i-w~~i~kpsa~~~~~l~dlf~~~~ 174 (772)
+..... +..+...|+.++.++.++|+...
T Consensus 140 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 140 KLAKEIGAIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred HHHHHhCCeEEEEeecCCCCCHHHHHHHHh
Confidence 222222 22567789999999999998654
No 123
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.84 E-value=3.9e-08 Score=96.01 Aligned_cols=156 Identities=13% Similarity=0.088 Sum_probs=91.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+++|.+|||||||+|++.+..|.. ....|+...+.-...... ..+-++||||...- +. ++. .
T Consensus 4 i~liG~~~~GKTsli~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~------~~~---~ 68 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNVFIE-----SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF-TA------MRE---L 68 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCc-----ccCCcchheEEEEEEECCEEEEEEEEeCCCcccc-hh------hhH---H
Confidence 6899999999999999999888742 124466555533322222 45678999996511 11 111 1
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh--cCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD--SVPK 157 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~--~i~k 157 (772)
.+..+|.+++.....+.. ...-++...+...+.+...+.|+++|.||.|..+...+.......+.+-|. .+.+
T Consensus 69 ~~~~~~~~vlv~~~~~~~-----s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (168)
T cd04177 69 YIKSGQGFLLVYSVTSEA-----SLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYE 143 (168)
T ss_pred HHhhCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEE
Confidence 234567666543322211 111122222322334445678999999999975443322111122222343 3567
Q ss_pred CCCccCCCchhhHHHHHhhc
Q 004126 158 PQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~L 177 (772)
.|+..+.++.++|+.....+
T Consensus 144 ~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 144 TSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred eeCCCCCCHHHHHHHHHHHH
Confidence 89999999999998876544
No 124
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.84 E-value=5e-08 Score=93.72 Aligned_cols=150 Identities=9% Similarity=0.046 Sum_probs=86.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeE----ec--CCCCcEEEEecCCCCCcCCCCCccHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR----CA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQ 75 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i----~~--~~~~qil~lDteG~~s~er~e~~~~fe~k 75 (772)
|.++|.+|+|||||+|++.+..|.. ..+.|-|.-... .. .....+.++||||.. .| ..
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~-~~ 66 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGIFTK------DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE---------EF-DA 66 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC------CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH---------HH-HH
Confidence 7899999999999999999987752 223343332211 11 223568899999943 11 11
Q ss_pred HHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhc
Q 004126 76 SALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDS 154 (772)
Q Consensus 76 ~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~ 154 (772)
.....+..+|++++.....+.. ....+....+. +... ....|+++|.||.|..+...+. +...+..+.+--.
T Consensus 67 ~~~~~~~~~~~~v~v~d~~~~~-----s~~~l~~~~~~-~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 139 (162)
T cd04106 67 ITKAYYRGAQACILVFSTTDRE-----SFEAIESWKEK-VEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP 139 (162)
T ss_pred hHHHHhcCCCEEEEEEECCCHH-----HHHHHHHHHHH-HHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe
Confidence 2233467889887755433211 11112111111 0100 1468899999999975433322 1222222222124
Q ss_pred CCCCCCccCCCchhhHHHHH
Q 004126 155 VPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~ 174 (772)
+.+.|+..+.+++++|+...
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 140 LFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 66788899999999998654
No 125
>PLN03127 Elongation factor Tu; Provisional
Probab=98.84 E-value=3.2e-08 Score=112.85 Aligned_cols=124 Identities=16% Similarity=0.101 Sum_probs=79.2
Q ss_pred EEEeCCCCCChHHHHhHHhCC------C----eeeecCC--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT------N----FREMDAF--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDD 69 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt------k----fsims~~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~ 69 (772)
|+|+|..++|||||+|+|.|. . +++||.. ...+.+|...-......++.++.|+||||.+
T Consensus 64 i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~-------- 135 (447)
T PLN03127 64 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA-------- 135 (447)
T ss_pred EEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc--------
Confidence 689999999999999999743 2 1233321 1235677776555555667899999999974
Q ss_pred cHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCcc-EEEEEeCCCCCChhchHHHHH
Q 004126 70 TAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LMFVIRDKTRTPLENLEPVLR 145 (772)
Q Consensus 70 ~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~-llfVIrd~d~t~~e~l~~~l~ 145 (772)
+|.+. ...++..+|++++.+...+ |- .+....++..+.. .+.| +++||||+|..+.+.+.+.+.
T Consensus 136 -~f~~~-~~~g~~~aD~allVVda~~-g~-~~qt~e~l~~~~~--------~gip~iIvviNKiDlv~~~~~~~~i~ 200 (447)
T PLN03127 136 -DYVKN-MITGAAQMDGGILVVSAPD-GP-MPQTKEHILLARQ--------VGVPSLVVFLNKVDVVDDEELLELVE 200 (447)
T ss_pred -chHHH-HHHHHhhCCEEEEEEECCC-CC-chhHHHHHHHHHH--------cCCCeEEEEEEeeccCCHHHHHHHHH
Confidence 24433 3446677999998876532 21 1222334444433 4566 678999999876444443343
No 126
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.83 E-value=4.1e-08 Score=100.68 Aligned_cols=156 Identities=14% Similarity=0.123 Sum_probs=91.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccc--eeeEe---cCCCCcEEEEecCCCCCcCCCCCccHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGI--WMARC---AGIEPCTLIMDLEGTDGRERGEDDTAFEKQS 76 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGi--w~~i~---~~~~~qil~lDteG~~s~er~e~~~~fe~k~ 76 (772)
|.|+|.+|+|||||+|++++.+|.... .+|.|+ +.-.. ......+.+.||+|.. + + ...
T Consensus 5 IvvvG~~~vGKTsLi~~l~~~~~~~~~------~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~---~------~-~~~ 68 (211)
T cd04111 5 LIVIGDSTVGKSSLLKRFTEGRFAEVS------DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE---R------F-RSI 68 (211)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCC------CceeceEEEEEEEEECCCCEEEEEEEeCCcch---h------H-HHH
Confidence 689999999999999999999986532 233332 21111 1223468899999953 1 1 223
Q ss_pred HHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcC
Q 004126 77 ALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSV 155 (772)
Q Consensus 77 alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i 155 (772)
....+..+|++|+.....+.. ...-+....+...+.....++++++|.||.|+.+...+. +...+.....--.+
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~-----Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~ 143 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRE-----SFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKY 143 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHH-----HHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEE
Confidence 344567899887755443321 111122222212222233567889999999975432222 22222211111235
Q ss_pred CCCCCccCCCchhhHHHHHhhcC
Q 004126 156 PKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
...|+..+.++.++|+.....+.
T Consensus 144 ~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 144 IETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 56789999999999998776553
No 127
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.83 E-value=4.3e-08 Score=97.22 Aligned_cols=153 Identities=14% Similarity=0.052 Sum_probs=90.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC---CCcEEEEecCCCCCcCCCCCccHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI---EPCTLIMDLEGTDGRERGEDDTAFEKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~---~~qil~lDteG~~s~er~e~~~~fe~k~al 78 (772)
|.|+|.+++|||||+|++.+..|.. ...+|+...+....... ...+.+.||||.. + |. ....
T Consensus 3 i~vvG~~~vGKTsli~~l~~~~~~~-----~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~---~------~~-~~~~ 67 (187)
T cd04132 3 IVVVGDGGCGKTCLLIVYSQGKFPE-----EYVPTVFENYVTNIQGPNGKIIELALWDTAGQE---E------YD-RLRP 67 (187)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCC-----CCCCeeeeeeEEEEEecCCcEEEEEEEECCCch---h------HH-HHHH
Confidence 7899999999999999999988852 23444433333332222 3467899999953 1 11 1222
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCChh----chH-HHHHHHHHHH
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTPLE----NLE-PVLREDIQKI 151 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~~e----~l~-~~l~~~l~~i 151 (772)
..+..+|++|+.....+.. -+..+.+..+.... ..+.|+++|.||.|+.+.. .+. ....+.....
T Consensus 68 ~~~~~ad~ii~v~d~~~~~--------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~ 139 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPT--------SLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQ 139 (187)
T ss_pred HhCCCCCEEEEEEECCCHH--------HHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHc
Confidence 3467899998765443211 11111111111111 2468999999999975422 111 1222222222
Q ss_pred -hhcCCCCCCccCCCchhhHHHHHhhc
Q 004126 152 -WDSVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 152 -w~~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
+..+...|+..+.++.++|+.....+
T Consensus 140 ~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 140 GAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred CCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 22467789999999999999876554
No 128
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.82 E-value=3.8e-08 Score=99.49 Aligned_cols=158 Identities=9% Similarity=-0.028 Sum_probs=92.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceee--Eec---CCCCcEEEEecCCCCCcCCCCCccHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA--RCA---GIEPCTLIMDLEGTDGRERGEDDTAFEKQS 76 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~--i~~---~~~~qil~lDteG~~s~er~e~~~~fe~k~ 76 (772)
|.|+|.+|||||||+|++.+..|.. ..++|.|.=.. ... .....+.++||+|-. +. +..
T Consensus 3 ivivG~~~vGKTsli~~l~~~~~~~------~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~---~~-------~~~ 66 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHGIFSQ------HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE---RF-------GGM 66 (201)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC------CCCCceeEEEEEEEEEECCCCEEEEEEEECCCch---hh-------hhh
Confidence 6899999999999999999987752 34566653211 111 234567899999963 21 112
Q ss_pred HHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhch-HHHHHHHHHHHh-hc
Q 004126 77 ALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL-EPVLREDIQKIW-DS 154 (772)
Q Consensus 77 alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l-~~~l~~~l~~iw-~~ 154 (772)
....+..+|++|+.....+....... ...+..+.+ .+.+-.....|+++|.||.|+.+.... .+.+.+...... ..
T Consensus 67 ~~~~~~~a~~~ilv~D~t~~~s~~~~-~~~~~~i~~-~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 144 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAV-LKWKADLDS-KVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIG 144 (201)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHH-hhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCce
Confidence 23446789999776544332211110 001111111 011111256899999999998532222 222333332222 34
Q ss_pred CCCCCCccCCCchhhHHHHHhhc
Q 004126 155 VPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
+...|+..+.+++++|+.....+
T Consensus 145 ~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 145 WFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 66789999999999999877655
No 129
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.82 E-value=2.9e-08 Score=107.68 Aligned_cols=126 Identities=15% Similarity=0.080 Sum_probs=75.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|.|+|.+....+. .+.||....+.........+.|+||||++...... ...+.....+-+
T Consensus 41 IllvGktGVGKSSliNsIlG~~v~~vs~---f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~--e~~~~~ik~~l~ 115 (313)
T TIGR00991 41 ILVMGKGGVGKSSTVNSIIGERIATVSA---FQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYIN--DQAVNIIKRFLL 115 (313)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcccccC---CCCcceeEEEEEEEECCeEEEEEECCCCCchHHHH--HHHHHHHHHHhh
Confidence 7899999999999999999999887764 33444443333333456799999999998443210 122222222211
Q ss_pred h-cccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC-CCccEEEEEeCCCCCCh
Q 004126 82 A-VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTPL 137 (772)
Q Consensus 82 a-~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~-~k~~llfVIrd~d~t~~ 137 (772)
. ..|++|+..- .|..+.......+++.+ ..+|++ --...++|+...+..|.
T Consensus 116 ~~g~DvVLyV~r-LD~~R~~~~DkqlLk~I----qe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 116 GKTIDVLLYVDR-LDAYRVDTLDGQVIRAI----TDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred cCCCCEEEEEec-cCcccCCHHHHHHHHHH----HHHhhhhhhccEEEEEECCccCCC
Confidence 1 4888876532 22333333334444444 346764 23457788888876543
No 130
>PRK00049 elongation factor Tu; Reviewed
Probab=98.82 E-value=2.9e-08 Score=111.51 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=86.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCC----------eeeecCC--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN----------FREMDAF--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDD 69 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk----------fsims~~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~ 69 (772)
|+|+|..++|||||+|+|++.. +++|+.. ...+.+|...-......++.++.|+||||..
T Consensus 15 i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-------- 86 (396)
T PRK00049 15 VGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA-------- 86 (396)
T ss_pred EEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH--------
Confidence 7899999999999999999842 1233321 1134455555443444466799999999963
Q ss_pred cHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEE-EEEeCCCCCChhchH----HHH
Q 004126 70 TAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLM-FVIRDKTRTPLENLE----PVL 144 (772)
Q Consensus 70 ~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~ll-fVIrd~d~t~~e~l~----~~l 144 (772)
+|. +.+..++..+|++++.+...+ |- ......++..+.. ...|.+ +++||+|..+.+... ..+
T Consensus 87 -~f~-~~~~~~~~~aD~~llVVDa~~-g~-~~qt~~~~~~~~~--------~g~p~iiVvvNK~D~~~~~~~~~~~~~~i 154 (396)
T PRK00049 87 -DYV-KNMITGAAQMDGAILVVSAAD-GP-MPQTREHILLARQ--------VGVPYIVVFLNKCDMVDDEELLELVEMEV 154 (396)
T ss_pred -HHH-HHHHhhhccCCEEEEEEECCC-CC-chHHHHHHHHHHH--------cCCCEEEEEEeecCCcchHHHHHHHHHHH
Confidence 343 345677899999998776532 21 1222334444433 456654 689999987544332 233
Q ss_pred HHHHHHH-h----hcCCCCCCccCC
Q 004126 145 REDIQKI-W----DSVPKPQAHMET 164 (772)
Q Consensus 145 ~~~l~~i-w----~~i~kpsa~~~~ 164 (772)
.+.+..+ | ..+.+.|+..+.
T Consensus 155 ~~~l~~~~~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 155 RELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred HHHHHhcCCCccCCcEEEeeccccc
Confidence 3344332 2 234566776553
No 131
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.81 E-value=4.9e-08 Score=97.58 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=90.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.+|||||||+|++..-.|.. ..+|.|.-.......+..+.+.||||.+ + .+......+
T Consensus 20 v~lvG~~~vGKTsli~~~~~~~~~~-------~~~T~~~~~~~~~~~~~~~~l~D~~G~~---~-------~~~~~~~~~ 82 (182)
T PTZ00133 20 ILMVGLDAAGKTTILYKLKLGEVVT-------TIPTIGFNVETVEYKNLKFTMWDVGGQD---K-------LRPLWRHYY 82 (182)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCccc-------cCCccccceEEEEECCEEEEEEECCCCH---h-------HHHHHHHHh
Confidence 7899999999999999997656632 1233344333334456789999999974 1 122344557
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCCChhchHHHHHHHHHH--Hhh---
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRTPLENLEPVLREDIQK--IWD--- 153 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t~~e~l~~~l~~~l~~--iw~--- 153 (772)
..+|++|+.+...+... +..+.+...++... .++|+++|.||.|+...... ..+...+.. ++.
T Consensus 83 ~~ad~iI~v~D~t~~~s--------~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~-~~i~~~l~~~~~~~~~~ 153 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRER--------IGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST-TEVTEKLGLHSVRQRNW 153 (182)
T ss_pred cCCCEEEEEEeCCCHHH--------HHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH-HHHHHHhCCCcccCCcE
Confidence 88999988765443221 11111111122211 46889999999997432111 122222221 111
Q ss_pred cCCCCCCccCCCchhhHHHHHhhcC
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
-+.+.|+.++.+++++|+.....+-
T Consensus 154 ~~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 154 YIQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred EEEeeeCCCCCCHHHHHHHHHHHHH
Confidence 1345689999999999998766543
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.81 E-value=3.2e-08 Score=96.42 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=86.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|++|+|||||+|+|.|..+.... .|.|.-..........+.++||||... + .......+
T Consensus 17 v~i~G~~g~GKStLl~~l~~~~~~~~~-------~t~g~~~~~i~~~~~~~~~~D~~G~~~---------~-~~~~~~~~ 79 (173)
T cd04155 17 ILILGLDNAGKTTILKQLASEDISHIT-------PTQGFNIKTVQSDGFKLNVWDIGGQRA---------I-RPYWRNYF 79 (173)
T ss_pred EEEEccCCCCHHHHHHHHhcCCCcccC-------CCCCcceEEEEECCEEEEEEECCCCHH---------H-HHHHHHHh
Confidence 789999999999999999998775432 233422222233456788999999631 1 11223446
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHH--H----HhhcC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ--K----IWDSV 155 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~--~----iw~~i 155 (772)
..+|++++.+...+....... ...+..+.+ -......|+++++||.|....+..+. +.+.+. . .| .+
T Consensus 80 ~~~~~ii~v~D~~~~~~~~~~-~~~~~~~~~----~~~~~~~p~ivv~nK~D~~~~~~~~~-i~~~l~~~~~~~~~~-~~ 152 (173)
T cd04155 80 ENTDCLIYVIDSADKKRLEEA-GAELVELLE----EEKLAGVPVLVFANKQDLATAAPAEE-IAEALNLHDLRDRTW-HI 152 (173)
T ss_pred cCCCEEEEEEeCCCHHHHHHH-HHHHHHHHh----ChhhcCCCEEEEEECCCCccCCCHHH-HHHHcCCcccCCCeE-EE
Confidence 788988776654332211110 111111111 00114689999999999754333322 222221 1 12 14
Q ss_pred CCCCCccCCCchhhHHHHH
Q 004126 156 PKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~ 174 (772)
.+.|+..+.+++++|+-..
T Consensus 153 ~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 153 QACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred EEeECCCCCCHHHHHHHHh
Confidence 5678999999999988653
No 133
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.81 E-value=5e-08 Score=95.86 Aligned_cols=155 Identities=10% Similarity=-0.036 Sum_probs=91.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--------------CCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--------------GIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--------------~~~~qil~lDteG~~s~er~e 67 (772)
|.++|.+|+|||||+|++.+.+|. ++..+|-|.-..... .....+-++||||-.
T Consensus 7 i~ivG~~~vGKTsli~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------ 74 (180)
T cd04127 7 FLALGDSGVGKTSFLYQYTDNKFN------PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE------ 74 (180)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC------ccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH------
Confidence 679999999999999999998774 344555553222111 122467899999942
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHH
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLRE 146 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~ 146 (772)
. .+......+..+|++++.....+.. +-..+.+.+.++.-.. ...++|+++|.||.|+.+...+. +...+
T Consensus 75 ---~-~~~~~~~~~~~~~~~i~v~d~~~~~----s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~~~~v~~~~~~~ 145 (180)
T cd04127 75 ---R-FRSLTTAFFRDAMGFLLIFDLTNEQ----SFLNVRNWMSQLQTHA-YCENPDIVLCGNKADLEDQRQVSEEQAKA 145 (180)
T ss_pred ---H-HHHHHHHHhCCCCEEEEEEECCCHH----HHHHHHHHHHHHHHhc-CCCCCcEEEEEeCccchhcCccCHHHHHH
Confidence 1 1223445567899887755433211 1111111111111111 12468899999999975432222 22233
Q ss_pred HHHHHhhcCCCCCCccCCCchhhHHHHHhhc
Q 004126 147 DIQKIWDSVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 147 ~l~~iw~~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
..+...-.+...|+..+.+++++|+.....+
T Consensus 146 ~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 146 LADKYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2222222456789999999999998876543
No 134
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.81 E-value=7.3e-08 Score=95.14 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=88.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|++|+|||||+|+|.+.+|.... +|-|.-..........+.++||||... | .......+
T Consensus 18 v~~~G~~~~GKTsl~~~l~~~~~~~~~-------~t~~~~~~~~~~~~~~~~l~D~~G~~~---------~-~~~~~~~~ 80 (174)
T cd04153 18 VIIVGLDNAGKTTILYQFLLGEVVHTS-------PTIGSNVEEIVYKNIRFLMWDIGGQES---------L-RSSWNTYY 80 (174)
T ss_pred EEEECCCCCCHHHHHHHHccCCCCCcC-------CccccceEEEEECCeEEEEEECCCCHH---------H-HHHHHHHh
Confidence 789999999999999999987775322 232332333344567899999999751 1 11223446
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC---hhchHHHHHH-HHH-HHhhcCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP---LENLEPVLRE-DIQ-KIWDSVP 156 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~---~e~l~~~l~~-~l~-~iw~~i~ 156 (772)
..+|++|+.+...+...... ....+..+.+ .. .-..+|+++|+||.|... .+.+.+.+.. ... .-| .+.
T Consensus 81 ~~~d~vi~V~D~s~~~~~~~-~~~~l~~~~~---~~-~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~-~~~ 154 (174)
T cd04153 81 TNTDAVILVIDSTDRERLPL-TKEELYKMLA---HE-DLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTW-HIQ 154 (174)
T ss_pred hcCCEEEEEEECCCHHHHHH-HHHHHHHHHh---ch-hhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCce-EEE
Confidence 78999988765443211110 0111222211 00 014689999999999743 2222222210 000 012 366
Q ss_pred CCCCccCCCchhhHHHHH
Q 004126 157 KPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~ 174 (772)
+.|+.++.+++++|+...
T Consensus 155 ~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 155 GCCALTGEGLPEGLDWIA 172 (174)
T ss_pred ecccCCCCCHHHHHHHHh
Confidence 789999999999998653
No 135
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.81 E-value=4.9e-08 Score=97.86 Aligned_cols=155 Identities=10% Similarity=0.001 Sum_probs=87.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|++.+.+|... ...|+.....-.... ....+-++||||.. +. . .....
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~f~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---~~----~---~~~~~ 66 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNHFVET-----YDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE---EY----T---ALRDQ 66 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCcc-----CCCchHhhEEEEEEECCEEEEEEEEECCCch---hh----H---HHHHH
Confidence 78999999999999999999888531 122332222111111 22357789999953 11 1 12223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCChhchHH-HHHHHHHHHhhcCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTPLENLEP-VLREDIQKIWDSVP 156 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~~e~l~~-~l~~~l~~iw~~i~ 156 (772)
.+..+|++|+.....+ .. ...-+...++.-..... ..+.|+++|.||.|+.+...+.. ...+....+.....
T Consensus 67 ~~~~ad~~ilv~d~~~---~~--s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 141 (190)
T cd04144 67 WIREGEGFILVYSITS---RS--TFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFI 141 (190)
T ss_pred HHHhCCEEEEEEECCC---HH--HHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEE
Confidence 4678898877553322 11 11112222221111111 25689999999999754333321 11222222222467
Q ss_pred CCCCccCCCchhhHHHHHhh
Q 004126 157 KPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~ 176 (772)
+.|+..+.+++++|+.....
T Consensus 142 e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 142 EASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred EecCCCCCCHHHHHHHHHHH
Confidence 88999999999999876543
No 136
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.80 E-value=2.3e-08 Score=113.04 Aligned_cols=157 Identities=12% Similarity=0.083 Sum_probs=97.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeee-------------------------ecC--CCCCCCCcccceeeEecCCCCcEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFRE-------------------------MDA--FKGRSQTTKGIWMARCAGIEPCTLI 54 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsi-------------------------ms~--~~~r~QTTrGiw~~i~~~~~~qil~ 54 (772)
|+|+|.+++|||||+|+|++..=.| ||. ....+.+|+++-.........++.|
T Consensus 9 v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~l 88 (425)
T PRK12317 9 LAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTI 88 (425)
T ss_pred EEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEE
Confidence 7899999999999999999543332 221 0124678888887777777889999
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccc-cccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCC
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDI-GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 133 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~di-g~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d 133 (772)
+||||.. + |. +....++..+|++|+.+...+. |. .......+..+.. + ..+++++|+||+|
T Consensus 89 iDtpG~~---~------~~-~~~~~~~~~aD~~ilVvDa~~~~~~-~~~~~~~~~~~~~-----~--~~~~iivviNK~D 150 (425)
T PRK12317 89 VDCPGHR---D------FV-KNMITGASQADAAVLVVAADDAGGV-MPQTREHVFLART-----L--GINQLIVAINKMD 150 (425)
T ss_pred EECCCcc---c------ch-hhHhhchhcCCEEEEEEEcccCCCC-CcchHHHHHHHHH-----c--CCCeEEEEEEccc
Confidence 9999942 1 11 1233456889999887766431 21 1112222222221 1 2357999999999
Q ss_pred CCC--hhch---HHHHHHHHHHH-h----hcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 134 RTP--LENL---EPVLREDIQKI-W----DSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 134 ~t~--~e~l---~~~l~~~l~~i-w----~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
+.+ .+.+ .+.+.+.+..+ + ..+.+.|+..+.++.+.++ .+|+|
T Consensus 151 l~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~----~~~wy 203 (425)
T PRK12317 151 AVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE----NMPWY 203 (425)
T ss_pred cccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc----CCCcc
Confidence 864 2222 23333333322 2 1367789999999988654 35555
No 137
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.80 E-value=6.3e-08 Score=94.25 Aligned_cols=153 Identities=16% Similarity=0.067 Sum_probs=86.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceee---E-ecCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---R-CAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~---i-~~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.++|.+|||||||+|++.+.+|.. ....|-|.-.. + .......+.++||||-. + | +...
T Consensus 8 i~vvG~~~~GKTsli~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~---~------~-~~~~ 71 (170)
T cd04116 8 VILLGDGGVGKSSLMNRYVTNKFDT------QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE---R------F-RSLR 71 (170)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCc------CcCCceeeEEEEEEEEECCeEEEEEEEeCCChH---H------H-HHhH
Confidence 6799999999999999999988863 12233332111 1 12233467789999953 1 1 1122
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC---CCCccEEEEEeCCCCCChhchHHHHHHHHHHHh-h
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS---PRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-D 153 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~---~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-~ 153 (772)
...+..+|++++.....+..... .+-+.+.+ .++... ....|+++|.||.|+.+.+...+.+.+...... .
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~----~~~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 146 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQ----NLSNWKKE-FIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDY 146 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHH----hHHHHHHH-HHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCC
Confidence 33456788877644332221111 11111111 111111 246799999999997533222233333333332 2
Q ss_pred cCCCCCCccCCCchhhHHHHHh
Q 004126 154 SVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
.+...|+..+.++.++|+....
T Consensus 147 ~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 147 PYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4567789999999999987654
No 138
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.79 E-value=6.8e-08 Score=98.99 Aligned_cols=156 Identities=10% Similarity=0.016 Sum_probs=88.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcc-cceeeEecC---CCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTK-GIWMARCAG---IEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTr-Giw~~i~~~---~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|+|.+|+|||||+|+|.+..|.. ...+|+. ..+.-.... ....+.+.||+|-. + + ..+.
T Consensus 3 i~ivG~~~vGKSsLi~~l~~~~~~~-----~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~---~------~-~~l~ 67 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKEGFGK-----SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS---I------G-GKML 67 (215)
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCC-----CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcH---H------H-HHHH
Confidence 6899999999999999999988752 1233332 232222222 23567899999943 1 1 1122
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhc
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDS 154 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~ 154 (772)
-.-+..+|++|+.....+... ..-++...+...+... ..++|+++|.||+|+....... +...+.....-..
T Consensus 68 ~~~~~~ad~iilV~D~t~~~s-----~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~ 142 (215)
T cd04109 68 DKYIYGAHAVFLVYDVTNSQS-----FENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGME 142 (215)
T ss_pred HHHhhcCCEEEEEEECCCHHH-----HHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCE
Confidence 223678999988665433221 1111222221122222 1356899999999975322221 2222222211112
Q ss_pred CCCCCCccCCCchhhHHHHHhhc
Q 004126 155 VPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
....|+..+.++.++|+.....+
T Consensus 143 ~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 143 SCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999998876544
No 139
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.79 E-value=6.4e-08 Score=97.93 Aligned_cols=153 Identities=17% Similarity=0.064 Sum_probs=90.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec----CCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA----GIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~----~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|+|.+|||||||+|++.+..|.. ...+|-|+-..+.. .....+.++||||.. + | +...
T Consensus 9 ivvvG~~~vGKTsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~---~------~-~~~~ 72 (199)
T cd04110 9 LLIIGDSGVGKSSLLLRFADNTFSG------SYITTIGVDFKIRTVEINGERVKLQIWDTAGQE---R------F-RTIT 72 (199)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC------CcCccccceeEEEEEEECCEEEEEEEEeCCCch---h------H-HHHH
Confidence 6799999999999999999988852 22344443222211 122467899999953 1 1 1223
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~ 156 (772)
...+..+|++|+.....+. ....-+...++.... .....|+++|+||+|+.+...+. ....+.....-..+.
T Consensus 73 ~~~~~~a~~iilv~D~~~~-----~s~~~~~~~~~~i~~--~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNG-----ESFVNVKRWLQEIEQ--NCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLF 145 (199)
T ss_pred HHHhCCCcEEEEEEECCCH-----HHHHHHHHHHHHHHH--hCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 3445778988775543221 111112222221111 12467899999999986543332 222222222222467
Q ss_pred CCCCccCCCchhhHHHHHhhc
Q 004126 157 KPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~L 177 (772)
+.|+..+.+++++|+.....+
T Consensus 146 e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 146 ETSAKENINVEEMFNCITELV 166 (199)
T ss_pred EEECCCCcCHHHHHHHHHHHH
Confidence 789999999999999876644
No 140
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.78 E-value=7.2e-09 Score=101.09 Aligned_cols=53 Identities=17% Similarity=0.086 Sum_probs=43.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGT 60 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~ 60 (772)
|+++|+||+|||||+|+|.|.+...+++ .++|||+.-+-. . ...+.++||||+
T Consensus 105 v~~~G~~nvGKStliN~l~~~~~~~~~~---~~g~T~~~~~~~--~-~~~~~liDtPGi 157 (157)
T cd01858 105 VGFIGYPNVGKSSIINTLRSKKVCKVAP---IPGETKVWQYIT--L-MKRIYLIDCPGV 157 (157)
T ss_pred EEEEeCCCCChHHHHHHHhcCCceeeCC---CCCeeEeEEEEE--c-CCCEEEEECcCC
Confidence 5799999999999999999998877774 588998754322 2 346899999996
No 141
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.78 E-value=9e-08 Score=92.36 Aligned_cols=156 Identities=13% Similarity=0.100 Sum_probs=88.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|+|.+|+|||||+|++.+..|... ...|+.+.......... ..+-++||||.. +.. . ....
T Consensus 4 i~i~G~~~vGKTsl~~~~~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---~~~---~----~~~~ 68 (163)
T cd04176 4 VVVLGSGGVGKSALTVQFVSGTFIEK-----YDPTIEDFYRKEIEVDSSPSVLEILDTAGTE---QFA---S----MRDL 68 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCC-----CCCchhheEEEEEEECCEEEEEEEEECCCcc---ccc---c----hHHH
Confidence 68999999999999999999877531 12243333332222222 345689999963 211 0 1122
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHh-hcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-~~i~kp 158 (772)
.+..+|++|+.....+... ..-+....+...+.....+.|+++|.||.|+.+...+.......+.+-+ ..+.+.
T Consensus 69 ~~~~ad~~i~v~d~~~~~s-----~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (163)
T cd04176 69 YIKNGQGFIVVYSLVNQQT-----FQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMET 143 (163)
T ss_pred HHhhCCEEEEEEECCCHHH-----HHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEe
Confidence 3567898877554332211 1111111111112222357899999999997543332221122222222 245677
Q ss_pred CCccCCCchhhHHHHHhhc
Q 004126 159 QAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~L 177 (772)
|+.++.++.++|+.....|
T Consensus 144 Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 144 SAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred cCCCCCCHHHHHHHHHHhc
Confidence 9999999999998776543
No 142
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.77 E-value=2.3e-08 Score=97.48 Aligned_cols=152 Identities=14% Similarity=0.041 Sum_probs=86.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|||||||+|++.+..|..- ...|+......... .....+.++||||.. +.. .++ ..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---~~~----~~~---~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPED-----YVPTVFENYSADVEVDGKPVELGLWDTAGQE---DYD----RLR---PL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCC-----CCCcEEeeeeEEEEECCEEEEEEEEECCCCc---ccc----hhc---hh
Confidence 57999999999999999999988531 12233222221111 123468899999964 110 011 22
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCChhc------------hH-HHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTPLEN------------LE-PVL 144 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~~e~------------l~-~~l 144 (772)
.+..+|++|+.....+. .-+..+.+..++... ....|+++|.||.|+.+... +. +..
T Consensus 66 ~~~~~d~~ilv~d~~~~--------~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 137 (174)
T smart00174 66 SYPDTDVFLICFSVDSP--------ASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQG 137 (174)
T ss_pred hcCCCCEEEEEEECCCH--------HHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHH
Confidence 46689999875543221 111111111111111 14789999999999754221 11 111
Q ss_pred HHHHHHHhh-cCCCCCCccCCCchhhHHHHHhh
Q 004126 145 REDIQKIWD-SVPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 145 ~~~l~~iw~-~i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
.+....+.. ...+.|+..+.+++++|+.....
T Consensus 138 ~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 138 EALAKRIGAVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred HHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 112222222 45678999999999999887654
No 143
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.77 E-value=4.6e-08 Score=98.37 Aligned_cols=115 Identities=23% Similarity=0.217 Sum_probs=67.5
Q ss_pred EEEeCCCCCChHHHHhHHhCC--Ceee--------ecCC--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT--NFRE--------MDAF--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDD 69 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt--kfsi--------ms~~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~ 69 (772)
|+|+|.+++|||||+|+|++. .|.. ++.. .....+|..............+.++||||..
T Consensus 5 i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~-------- 76 (194)
T cd01891 5 IAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA-------- 76 (194)
T ss_pred EEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH--------
Confidence 789999999999999999973 3321 1100 0012233333333333456788999999975
Q ss_pred cHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 70 TAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 70 ~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
+|. ......+..+|++++.+...+ +... ....+++.+.+ ...|+++|+||+|+..
T Consensus 77 -~~~-~~~~~~~~~~d~~ilV~d~~~-~~~~-~~~~~~~~~~~--------~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 77 -DFG-GEVERVLSMVDGVLLLVDASE-GPMP-QTRFVLKKALE--------LGLKPIVVINKIDRPD 131 (194)
T ss_pred -HHH-HHHHHHHHhcCEEEEEEECCC-CccH-HHHHHHHHHHH--------cCCCEEEEEECCCCCC
Confidence 122 233456788999988665533 1101 11112222222 4678899999999753
No 144
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.77 E-value=5.3e-08 Score=97.19 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=86.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceee--EecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA--RCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~--i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|+|.+|+|||||+|++.+.+|.. +.-++|-|.-.. ..... ...+-++||+|.. +.. .+.
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~---~~~-------~~~ 67 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHRFLV-----GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE---RYE-------AMS 67 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCC-----cCcccceeeEEEEEEEEECCEEEEEEEEECCCch---hhh-------hhh
Confidence 6899999999999999999988863 223444443221 12222 2345688999964 111 111
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh----chH-HHHHHHHHHHh
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE----NLE-PVLREDIQKIW 152 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e----~l~-~~l~~~l~~iw 152 (772)
...+..+|++|+.....+....... ...++.+.+ . ....|+++|+||.|+.+.. .+. ..+.+....+.
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~-~~~~~~i~~-----~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~ 140 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERA-KFWVKELQN-----L-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK 140 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHH-HHHHHHHHh-----c-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC
Confidence 2234678988876644332211100 111222211 1 1368999999999975322 111 12222222222
Q ss_pred hcCCCCCCccCCCchhhHHHHHh
Q 004126 153 DSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 153 ~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
..+.+.|+..+.+++++|+....
T Consensus 141 ~~~~~~Sa~~~~gv~~l~~~i~~ 163 (193)
T cd04118 141 AQHFETSSKTGQNVDELFQKVAE 163 (193)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 34567899999999999987653
No 145
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.77 E-value=8.2e-08 Score=93.64 Aligned_cols=151 Identities=13% Similarity=0.079 Sum_probs=88.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|++.+.+|.- ...+|+...+........ ..+-++||||-+.-... + -.
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~---~~ 67 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDAFPE-----EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL-------R---PL 67 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC-----CCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc-------c---cc
Confidence 6899999999999999999988852 245565555543333332 33568999997532211 1 12
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCChhchH-------------HHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTPLENLE-------------PVL 144 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~~e~l~-------------~~l 144 (772)
.+..+|++|+.....+.. -+..+.+..++.+. ....|+++|.||.|+.+..... +..
T Consensus 68 ~~~~~~~~ilv~~~~~~~--------s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 139 (174)
T cd04135 68 SYPMTDVFLICFSVVNPA--------SFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQG 139 (174)
T ss_pred cCCCCCEEEEEEECCCHH--------HHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHH
Confidence 356789887754332211 11112111111111 2578999999999975432111 111
Q ss_pred HHHHHHH-hhcCCCCCCccCCCchhhHHHHHh
Q 004126 145 REDIQKI-WDSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 145 ~~~l~~i-w~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
......+ +..+...|+.++.+++++|+-...
T Consensus 140 ~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 140 QKLAKEIGAHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred HHHHHHcCCCEEEEecCCcCCCHHHHHHHHHH
Confidence 1122223 234667899999999999987654
No 146
>PTZ00369 Ras-like protein; Provisional
Probab=98.76 E-value=1.2e-07 Score=95.03 Aligned_cols=157 Identities=11% Similarity=0.023 Sum_probs=90.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|++.+.+|.- ....|+..........+ ...+-++||||... . . .+...
T Consensus 8 i~iiG~~~~GKTsLi~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---~----~---~l~~~ 72 (189)
T PTZ00369 8 LVVVGGGGVGKSALTIQFIQNHFID-----EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEE---Y----S---AMRDQ 72 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCc-----CcCCchhhEEEEEEEECCEEEEEEEEeCCCCcc---c----h---hhHHH
Confidence 6799999999999999999988742 12233322222211222 23456899999641 1 1 12223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH-HHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP-VLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~-~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.....+.. ...-++...+...+.....+.|+++|.||.|..+...+.. ...+..+.....+...
T Consensus 73 ~~~~~d~iilv~D~s~~~-----s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~ 147 (189)
T PTZ00369 73 YMRTGQGFLCVYSITSRS-----SFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLET 147 (189)
T ss_pred HhhcCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEe
Confidence 456889998766543321 1111222222122222235789999999999754322221 1112222222246788
Q ss_pred CCccCCCchhhHHHHHhhcC
Q 004126 159 QAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lp 178 (772)
|+..+.++.++|+.....+.
T Consensus 148 Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 148 SAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999988776543
No 147
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.76 E-value=6.3e-08 Score=113.82 Aligned_cols=157 Identities=16% Similarity=0.109 Sum_probs=97.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
.|+++|.+++|||||+|+|.|...+...+. .++.+|...-......++..+.|+||||- ..|. +.....
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE-~~rGiTid~~~~~~~~~~~~v~~iDtPGh---------e~f~-~~~~~g 70 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEE-KKRGMTIDLGFAYFPLPDYRLGFIDVPGH---------EKFI-SNAIAG 70 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhH-hcCCceEEeEEEEEEeCCEEEEEEECCCH---------HHHH-HHHHhh
Confidence 378999999999999999999763322211 12334444433334444567889999994 2343 345666
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCcc-EEEEEeCCCCCChhchH---HHHHHHHHHH-h---
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LMFVIRDKTRTPLENLE---PVLREDIQKI-W--- 152 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~-llfVIrd~d~t~~e~l~---~~l~~~l~~i-w--- 152 (772)
+..+|++|+.+...+ |. .......+..+.. ...+ +++|+||+|..+.+.+. +.+.+.+... +
T Consensus 71 ~~~aD~aILVVDa~~-G~-~~qT~ehl~il~~--------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~ 140 (581)
T TIGR00475 71 GGGIDAALLVVDADE-GV-MTQTGEHLAVLDL--------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKN 140 (581)
T ss_pred hccCCEEEEEEECCC-CC-cHHHHHHHHHHHH--------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 788999988776533 21 1111222222211 3445 99999999998766443 2333333322 1
Q ss_pred hcCCCCCCccCCCchhhHHHHHhhcC
Q 004126 153 DSVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 153 ~~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
..+.+.|+.++.+++++++.....++
T Consensus 141 ~~ii~vSA~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 141 AKIFKTSAKTGQGIGELKKELKNLLE 166 (581)
T ss_pred CcEEEEeCCCCCCchhHHHHHHHHHH
Confidence 24667899999999999987654443
No 148
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.75 E-value=9.6e-08 Score=98.75 Aligned_cols=154 Identities=9% Similarity=0.040 Sum_probs=88.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCccc--ceee--EecCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKG--IWMA--RCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrG--iw~~--i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|+|.+|+|||||+|++.+-.|.... -.+|-+ ...- ........+.++||||.. . +.+
T Consensus 3 I~lvG~~gvGKTsLi~~~~~~~~~~~~-----~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~-------~~~--- 65 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTSGEYDDHA-----YDASGDDDTYERTVSVDGEESTLVVIDHWEQE--M-------WTE--- 65 (221)
T ss_pred EEEECCCCCcHHHHHHHHhcCCcCccC-----cCCCccccceEEEEEECCEEEEEEEEeCCCcc--h-------HHH---
Confidence 789999999999999999877775211 112221 1111 112234678999999986 1 111
Q ss_pred HHHhh-cccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHH-HHHhhcC
Q 004126 78 LFALA-VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI-QKIWDSV 155 (772)
Q Consensus 78 lfALa-~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l-~~iw~~i 155 (772)
...+. .+|++|+.....+...+ .-++.+.+...+.....+.|+++|.||.|+.+...+.....+.+ ..+...+
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~-----~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~ 140 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSF-----ERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKF 140 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHH-----HHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeE
Confidence 12344 89999886655443211 11111111111111125789999999999865443322111111 1222235
Q ss_pred CCCCCccCCCchhhHHHHHhhc
Q 004126 156 PKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~L 177 (772)
...|+..+.+++++|+.....+
T Consensus 141 ~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 141 IETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 6779999999999998766444
No 149
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.75 E-value=1.3e-07 Score=92.73 Aligned_cols=153 Identities=13% Similarity=0.089 Sum_probs=85.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccc----eeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGI----WMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGi----w~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|+++|.+|+|||||+|++++..|.. ..++|-|. +.-........+-++||+|-. .|.....
T Consensus 5 i~vvG~~~vGKTsli~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~ 69 (170)
T cd04115 5 IIVIGDSNVGKTCLTYRFCAGRFPE------RTEATIGVDFRERTVEIDGERIKVQLWDTAGQE---------RFRKSMV 69 (170)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC------ccccceeEEEEEEEEEECCeEEEEEEEeCCChH---------HHHHhhH
Confidence 6899999999999999999887752 23444442 221122233578899999953 1211223
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHh-hcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-~~i~ 156 (772)
...+..+|++++.....+.. ...-+....+...........|+++|.||.|+.....+.....+.+.+-+ -.+.
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMA-----SFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLF 144 (170)
T ss_pred HHhhcCCCEEEEEEECCCHH-----HHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEE
Confidence 34467899887755432211 11112222211111112256899999999997533332221122222222 2345
Q ss_pred CCCCcc---CCCchhhHHHHH
Q 004126 157 KPQAHM---ETPLSEFFNVEV 174 (772)
Q Consensus 157 kpsa~~---~~~l~dlf~~~~ 174 (772)
..|+.. +.++.++|.-..
T Consensus 145 e~Sa~~~~~~~~i~~~f~~l~ 165 (170)
T cd04115 145 ETSAKDPSENDHVEAIFMTLA 165 (170)
T ss_pred EEeccCCcCCCCHHHHHHHHH
Confidence 567776 777888876554
No 150
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.75 E-value=1.2e-07 Score=93.44 Aligned_cols=145 Identities=16% Similarity=0.121 Sum_probs=87.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|||||||+|+|.+..|... .+ |-|.-.......+..+.+.||+|.+ + + +......+
T Consensus 12 v~i~G~~~~GKTsli~~l~~~~~~~~-----~~--t~g~~~~~~~~~~~~~~l~Dt~G~~---~------~-~~~~~~~~ 74 (168)
T cd04149 12 ILMLGLDAAGKTTILYKLKLGQSVTT-----IP--TVGFNVETVTYKNVKFNVWDVGGQD---K------I-RPLWRHYY 74 (168)
T ss_pred EEEECcCCCCHHHHHHHHccCCCccc-----cC--CcccceEEEEECCEEEEEEECCCCH---H------H-HHHHHHHh
Confidence 78999999999999999987766421 12 2222222222345789999999975 1 1 12334567
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCCChhchHHHHHHHHH--HH----h
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRTPLENLEPVLREDIQ--KI----W 152 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t~~e~l~~~l~~~l~--~i----w 152 (772)
..+|++|+.+...+... +..+.+...++... ..+|+++|.||+|+..... .+.+.+.+. .+ |
T Consensus 75 ~~a~~ii~v~D~t~~~s--------~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~ 145 (168)
T cd04149 75 TGTQGLIFVVDSADRDR--------IDEARQELHRIINDREMRDALLLVFANKQDLPDAMK-PHEIQEKLGLTRIRDRNW 145 (168)
T ss_pred ccCCEEEEEEeCCchhh--------HHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCC-HHHHHHHcCCCccCCCcE
Confidence 88999988765443221 12222211222221 3579999999999753111 112222221 11 3
Q ss_pred hcCCCCCCccCCCchhhHHHH
Q 004126 153 DSVPKPQAHMETPLSEFFNVE 173 (772)
Q Consensus 153 ~~i~kpsa~~~~~l~dlf~~~ 173 (772)
.+.+.|+..+.++.+.|+-+
T Consensus 146 -~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 146 -YVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred -EEEEeeCCCCCChHHHHHHH
Confidence 35678999999999999754
No 151
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.74 E-value=5.4e-08 Score=95.01 Aligned_cols=151 Identities=17% Similarity=0.089 Sum_probs=87.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|+|.++||||||++++.+..|.- ....|+...+...... ...++.++||+|...-.+ ....
T Consensus 4 i~iiG~~~~GKTsl~~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~ 68 (175)
T cd01870 4 LVIVGDGACGKTCLLIVFSKDQFPE-----VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR----------LRPL 68 (175)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-----CCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh----------cccc
Confidence 6899999999999999999988852 2233444444333322 234688999999752111 1112
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCChhchHHHH-------------
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTPLENLEPVL------------- 144 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~~e~l~~~l------------- 144 (772)
.+..+|++++.....+. . -+..+.+..+..+. ....|+++|.||.|+.+.+...+.+
T Consensus 69 ~~~~~d~~i~v~~~~~~---~-----s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~ 140 (175)
T cd01870 69 SYPDTDVILMCFSIDSP---D-----SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEG 140 (175)
T ss_pred ccCCCCEEEEEEECCCH---H-----HHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHH
Confidence 45789988764432211 1 11111111111111 1468999999999975433221111
Q ss_pred HHHHHHH-hhcCCCCCCccCCCchhhHHHHHh
Q 004126 145 REDIQKI-WDSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 145 ~~~l~~i-w~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
.+..... +..+...|+..+.+++++|+....
T Consensus 141 ~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 172 (175)
T cd01870 141 RDMANKIGAFGYMECSAKTKEGVREVFEMATR 172 (175)
T ss_pred HHHHHHcCCcEEEEeccccCcCHHHHHHHHHH
Confidence 1111112 235778899999999999987653
No 152
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.74 E-value=7.9e-08 Score=112.94 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=94.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCC-cEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEP-CTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~-qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|+|.+++|||||||+|.+++|.... .+.+|.++-....+..+. .+.|+||||-. .+. .++ ..+
T Consensus 90 V~I~Ghvd~GKTSLl~~l~~~~v~~~e----~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe------~F~-~~r---~rg 155 (587)
T TIGR00487 90 VTIMGHVDHGKTSLLDSIRKTKVAQGE----AGGITQHIGAYHVENEDGKMITFLDTPGHE------AFT-SMR---ARG 155 (587)
T ss_pred EEEECCCCCCHHHHHHHHHhCCccccc----CCceeecceEEEEEECCCcEEEEEECCCCc------chh-hHH---Hhh
Confidence 789999999999999999999887532 355777664433333334 89999999953 111 122 235
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC--ChhchHHHHHHH--HHHHhh---
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT--PLENLEPVLRED--IQKIWD--- 153 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t--~~e~l~~~l~~~--l~~iw~--- 153 (772)
+..+|++|+.+...+ |. .......+.... ..+.|+++++||+|+. ..+.+.+.+.+. ...-|.
T Consensus 156 a~~aDiaILVVda~d-gv-~~qT~e~i~~~~--------~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~ 225 (587)
T TIGR00487 156 AKVTDIVVLVVAADD-GV-MPQTIEAISHAK--------AANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDT 225 (587)
T ss_pred hccCCEEEEEEECCC-CC-CHhHHHHHHHHH--------HcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCc
Confidence 678999988765432 21 111112222221 2568899999999974 334444443321 111232
Q ss_pred cCCCCCCccCCCchhhHHHHH
Q 004126 154 SVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~ 174 (772)
.+.+.|+..+.+++++|+...
T Consensus 226 ~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 226 IFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred eEEEEECCCCCChHHHHHhhh
Confidence 367889999999999998764
No 153
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.73 E-value=5.9e-08 Score=113.14 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=74.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|++|+|||||+|.|+|.+...++. .++.||+-. .........++.|+||||+......+.......+.....+
T Consensus 121 IvLVGKTGVGKSSLINSILGekvf~vss--~~~~TTr~~-ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 121 ILVLGKSGVGKSATINSIFGEVKFSTDA--FGMGTTSVQ-EIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred EEEECCCCCCHHHHHHHHhccccccccC--CCCCceEEE-EEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 7899999999999999999998655553 356777742 2222234578999999999954322111122222232233
Q ss_pred h--cccEEEEeecccccccccc--CCHHHHHHHHHHHHhhcCC-CCccEEEEEeCCCCCC
Q 004126 82 A--VSDIVLINMWCHDIGREQA--ANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTP 136 (772)
Q Consensus 82 a--~sDvliiNl~~~dig~~~~--~n~~lLktv~evnl~lf~~-~k~~llfVIrd~d~t~ 136 (772)
+ ..|++|+.. .++++.. .+...++.+ ..+|++ --...++|....|..|
T Consensus 198 sk~gpDVVLlV~---RLd~~~~D~eD~~aLr~I----q~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 198 KKNPPDIVLYVD---RLDMQTRDSNDLPLLRTI----TDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred hcCCCCEEEEEE---eCCCccccHHHHHHHHHH----HHHhCHHhHcCEEEEEeCCccCC
Confidence 3 478886543 4443322 233344444 447876 2345667777776654
No 154
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.72 E-value=1.7e-07 Score=91.22 Aligned_cols=153 Identities=12% Similarity=0.021 Sum_probs=88.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceee---EecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---RCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~---i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~al 78 (772)
|.|+|.+|+|||||+|++.+.+|.. ..+.|+..-+.. ........+.+.||||.. .| +....
T Consensus 5 i~iiG~~~vGKTsli~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~-~~~~~ 69 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEKKFMA-----DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE---------RF-RAVTR 69 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-----CCCcccceeEEEEEEEECCEEEEEEEEECCCcH---------HH-HHHHH
Confidence 6899999999999999999988852 223343222111 112223567899999953 11 22334
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCC
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPK 157 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~k 157 (772)
..+..+|.+|+.....+.. ...-+....+.... ....+.|+++|.||+|+.....+. +...+.....-..+..
T Consensus 70 ~~~~~~~~~ilv~d~~~~~-----s~~~~~~~~~~~~~-~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 143 (166)
T cd04122 70 SYYRGAAGALMVYDITRRS-----TYNHLSSWLTDARN-LTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLE 143 (166)
T ss_pred HHhcCCCEEEEEEECCCHH-----HHHHHHHHHHHHHH-hCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEE
Confidence 4567899998765443321 11112222211111 123568899999999975433222 2222222222124567
Q ss_pred CCCccCCCchhhHHHHHh
Q 004126 158 PQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~ 175 (772)
.|+..+.++.++|+....
T Consensus 144 ~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 144 CSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 899999999999876554
No 155
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.72 E-value=8.1e-08 Score=107.97 Aligned_cols=85 Identities=15% Similarity=-0.042 Sum_probs=63.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC------------------------CCCcEEEEec
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG------------------------IEPCTLIMDL 57 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~------------------------~~~qil~lDt 57 (772)
|.|||.||||||||+|+|.+.++.+ + ..+-||+....|.... ...++-++||
T Consensus 4 igivG~pnvGKSTlfn~Lt~~~~~~-~---~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 4 IGLVGKPNVGKSTFFNAATLADVEI-A---NYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred EEEECCCCCCHHHHHHHHhCCcccc-c---CCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 7899999999999999999998865 2 3577998888776542 1245779999
Q ss_pred CCCCC-cCCCCCccHHHHHHHHHHhhcccEEEEeeccc
Q 004126 58 EGTDG-RERGEDDTAFEKQSALFALAVSDIVLINMWCH 94 (772)
Q Consensus 58 eG~~s-~er~e~~~~fe~k~alfALa~sDvliiNl~~~ 94 (772)
||+.. ..+++ -+....+..+..||++++.+.+.
T Consensus 80 aGl~~ga~~g~----glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGR----GLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchh----hHHHHHHHHHHHCCEEEEEEeCC
Confidence 99852 22221 12334566789999999888774
No 156
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.72 E-value=9.3e-08 Score=95.39 Aligned_cols=152 Identities=15% Similarity=0.114 Sum_probs=87.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccce-----eeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-----MARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQS 76 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw-----~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~ 76 (772)
|+++|.+|||||||+|++.+..|.. . .+|.|.- +.+.......+.+.||+|.. + | +..
T Consensus 6 v~~vG~~~~GKTsli~~~~~~~~~~-----~--~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---~------~-~~~ 68 (183)
T cd04152 6 IVMLGLDSAGKTTVLYRLKFNEFVN-----T--VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQE---K------L-RPL 68 (183)
T ss_pred EEEECCCCCCHHHHHHHHhcCCcCC-----c--CCccccceeEEEeeccCCCceEEEEEECCCcH---h------H-HHH
Confidence 7899999999999999999887742 1 2222221 11111234578999999953 1 1 112
Q ss_pred HHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC---hhchHHHHHHHHHHH--
Q 004126 77 ALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP---LENLEPVLREDIQKI-- 151 (772)
Q Consensus 77 alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~---~e~l~~~l~~~l~~i-- 151 (772)
....+..+|++|+.+...+... ...+....+...+.....+.|+++|+||+|..+ .+.++..+. +..+
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~-----~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~--~~~~~~ 141 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVER-----MEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLA--LHELSA 141 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHH-----HHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhC--ccccCC
Confidence 2333668999988665433211 111111111111111225689999999998742 222221111 0111
Q ss_pred --hhcCCCCCCccCCCchhhHHHHHhhc
Q 004126 152 --WDSVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 152 --w~~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
...+.+.|+..+.+++++|+.....+
T Consensus 142 ~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 142 STPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred CCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 01356789999999999999876544
No 157
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.72 E-value=1.1e-07 Score=103.01 Aligned_cols=164 Identities=18% Similarity=0.156 Sum_probs=111.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC-CCCcEEEEecCCCCC---cCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG-IEPCTLIMDLEGTDG---RERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~-~~~qil~lDteG~~s---~er~e~~~~fe~k~a 77 (772)
|.+||.||+|||||||.+-..+-.|-+ .+=||-..-+|.+.. ....+++-|.||+-. ...|. -.+|.+.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIad----YpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GL-G~~FLrHI- 235 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIAD----YPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGL-GLRFLRHI- 235 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccC----CccccccCcccEEEecCCCcEEEecCcccccccccCCCc-cHHHHHHH-
Confidence 578999999999999999999998866 688999999999986 456799999999961 11232 26787764
Q ss_pred HHHhhcccEEEEeecccccc-ccccCCHHHHHHHHHHHHhhcCC--CCccEEEEEeCCCCC-ChhchHHHHHHHHHH--H
Q 004126 78 LFALAVSDIVLINMWCHDIG-REQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRT-PLENLEPVLREDIQK--I 151 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig-~~~~~n~~lLktv~evnl~lf~~--~k~~llfVIrd~d~t-~~e~l~~~l~~~l~~--i 151 (772)
.-+-+++..+...... +.+.+++ +++.. -|..|++ ..+|-++|.||+|.. +.|.++ .+.+.+.+ .
T Consensus 236 ----ERt~vL~hviD~s~~~~~dp~~~~---~~i~~-EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~-~~~~~l~~~~~ 306 (369)
T COG0536 236 ----ERTRVLLHVIDLSPIDGRDPIEDY---QTIRN-ELEKYSPKLAEKPRIVVLNKIDLPLDEEELE-ELKKALAEALG 306 (369)
T ss_pred ----HhhheeEEEEecCcccCCCHHHHH---HHHHH-HHHHhhHHhccCceEEEEeccCCCcCHHHHH-HHHHHHHHhcC
Confidence 5667776666553222 1112222 22211 1333433 467888999999954 555555 33444443 2
Q ss_pred hhcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 152 WDSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 152 w~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
|.....+|++++.+++++.......+...
T Consensus 307 ~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 307 WEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 54333389999999999988877666554
No 158
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.71 E-value=2.2e-07 Score=90.56 Aligned_cols=146 Identities=13% Similarity=0.135 Sum_probs=85.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.++||||||+|++....|.. ..+|-|.-.........++.+.||||.+ + | +......+
T Consensus 3 v~~~G~~~~GKTsli~~l~~~~~~~-------~~pt~g~~~~~~~~~~~~~~l~D~~G~~---~------~-~~~~~~~~ 65 (159)
T cd04150 3 ILMVGLDAAGKTTILYKLKLGEIVT-------TIPTIGFNVETVEYKNISFTVWDVGGQD---K------I-RPLWRHYF 65 (159)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc-------cCCCCCcceEEEEECCEEEEEEECCCCH---h------H-HHHHHHHh
Confidence 6899999999999999997656642 1223333223333456788999999974 1 1 11233457
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCCChhchHHHHHHHH--HHH----h
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRTPLENLEPVLREDI--QKI----W 152 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t~~e~l~~~l~~~l--~~i----w 152 (772)
..+|++|+.+...+... +..+.+....+... ..+|+++|.||.|+.+..... .+.+.+ ..+ |
T Consensus 66 ~~ad~~i~v~D~~~~~s--------~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~-~i~~~~~~~~~~~~~~ 136 (159)
T cd04150 66 QNTQGLIFVVDSNDRER--------IGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAA-EVTDKLGLHSLRNRNW 136 (159)
T ss_pred cCCCEEEEEEeCCCHHH--------HHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHH-HHHHHhCccccCCCCE
Confidence 89999988765433221 11111111112111 358999999999975322111 111111 111 1
Q ss_pred hcCCCCCCccCCCchhhHHHHH
Q 004126 153 DSVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 153 ~~i~kpsa~~~~~l~dlf~~~~ 174 (772)
.+.+.|+..+.+++++|+...
T Consensus 137 -~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 137 -YIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred -EEEEeeCCCCCCHHHHHHHHh
Confidence 245679999999999998653
No 159
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.70 E-value=2.1e-07 Score=91.61 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=86.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCccccee--eE-ecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM--AR-CAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~--~i-~~~~~~qil~lDteG~~s~er~e~~~~fe~k~al 78 (772)
|.|+|.+|+|||||+|++.+..|.+ . ....|+...+. .+ ..+....+.+.||.|-..... ...
T Consensus 7 v~~vG~~~vGKTsli~~~~~~~f~~-~---~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~----------~~~ 72 (169)
T cd01892 7 CFVLGAKGSGKSALLRAFLGRSFSL-N---AYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL----------LND 72 (169)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCc-c---cCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc----------cch
Confidence 6899999999999999999999861 1 11223332221 11 122234677889887642111 111
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhch-HHHHHHHHHHH-hhcCC
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL-EPVLREDIQKI-WDSVP 156 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l-~~~l~~~l~~i-w~~i~ 156 (772)
..+..+|++|+.+...+.. -+..+.+..-.+....+.|+++|+||+|+.+.... .....+..+.+ .....
T Consensus 73 ~~~~~~d~~llv~d~~~~~--------s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (169)
T cd01892 73 AELAACDVACLVYDSSDPK--------SFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPL 144 (169)
T ss_pred hhhhcCCEEEEEEeCCCHH--------HHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCE
Confidence 2257999998866432211 11122221111212247899999999997533211 11111111222 22346
Q ss_pred CCCCccCCCchhhHHHHHhh
Q 004126 157 KPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~ 176 (772)
..|+.++.+++++|+.....
T Consensus 145 ~~Sa~~~~~v~~lf~~l~~~ 164 (169)
T cd01892 145 HFSSKLGDSSNELFTKLATA 164 (169)
T ss_pred EEEeccCccHHHHHHHHHHH
Confidence 77999999999999887653
No 160
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.70 E-value=1.9e-07 Score=95.10 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=89.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCC-eeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCC-CccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN-FREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGE-DDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk-fsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e-~~~~fe~k~alf 79 (772)
|+.+||-|+|||||+|+|+|.+ ++=+| .+|-.|+-+----. ++.+.++|.||.. -..+- ...+.-.+....
T Consensus 27 IaF~GRSNVGKSSlIN~l~~~k~LArtS---ktPGrTq~iNff~~---~~~~~lVDlPGYG-yAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 27 IAFAGRSNVGKSSLINALTNQKNLARTS---KTPGRTQLINFFEV---DDELRLVDLPGYG-YAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred EEEEccCcccHHHHHHHHhCCcceeecC---CCCCccceeEEEEe---cCcEEEEeCCCcc-cccCCHHHHHHHHHHHHH
Confidence 7899999999999999999965 66666 45666776654333 3559999999996 11110 001111222221
Q ss_pred Hhhc-ccEEEEeeccccccccccC-CHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-----h
Q 004126 80 ALAV-SDIVLINMWCHDIGREQAA-NKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-----W 152 (772)
Q Consensus 80 ALa~-sDvliiNl~~~dig~~~~~-n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-----w 152 (772)
=|.. +++..+.+ ..|+...... ....++.+.+ ...|+++|.+|+|+.+.....+.+..-.+.+ |
T Consensus 100 YL~~R~~L~~vvl-liD~r~~~~~~D~em~~~l~~--------~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~ 170 (200)
T COG0218 100 YLEKRANLKGVVL-LIDARHPPKDLDREMIEFLLE--------LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD 170 (200)
T ss_pred HHhhchhheEEEE-EEECCCCCcHHHHHHHHHHHH--------cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc
Confidence 1221 33332222 2244332322 1223344444 8999999999999987654443332222221 2
Q ss_pred hc-CCCCCCccCCCchhhHHHHHhhc
Q 004126 153 DS-VPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 153 ~~-i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
.. +.--|..++.+++++-..+...+
T Consensus 171 ~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 171 DQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred cceEEEEecccccCHHHHHHHHHHHh
Confidence 21 33345556666777766655443
No 161
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.69 E-value=1e-07 Score=101.20 Aligned_cols=115 Identities=17% Similarity=0.085 Sum_probs=67.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCC---CC-----------CCCCcccceeeEecCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAF---KG-----------RSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~---~~-----------r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e 67 (772)
|+|+|.+|+|||||+|+|++..-.+.... .| +.++|-+.-.+.....+.++.++||||..
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~------ 75 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYA------ 75 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHH------
Confidence 78999999999999999986443321100 00 01111121122222346789999999974
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
+|. ..+..++..+|.+++.+...+ |... ....+++.+.. .+.|+++|+||+|...
T Consensus 76 ---~f~-~~~~~~l~~aD~~i~Vvd~~~-g~~~-~~~~~~~~~~~--------~~~p~iivvNK~D~~~ 130 (268)
T cd04170 76 ---DFV-GETRAALRAADAALVVVSAQS-GVEV-GTEKLWEFADE--------AGIPRIIFINKMDRER 130 (268)
T ss_pred ---HHH-HHHHHHHHHCCEEEEEEeCCC-CCCH-HHHHHHHHHHH--------cCCCEEEEEECCccCC
Confidence 122 234567889999988775432 2111 11112222222 5678999999999753
No 162
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.69 E-value=1.7e-07 Score=91.97 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=85.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.++||||||+|++.|. |. .....|-|.-..........+.++||||-.. + +......+
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~-~~------~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~---------~-~~~~~~~~ 64 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE-IP------KKVAPTVGFTPTKLRLDKYEVCIFDLGGGAN---------F-RGIWVNYY 64 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC-CC------ccccCcccceEEEEEECCEEEEEEECCCcHH---------H-HHHHHHHH
Confidence 689999999999999999986 32 2334455544333344566788999999531 1 12334556
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh---chHHHHHHHHHHHhh-----
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE---NLEPVLREDIQKIWD----- 153 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e---~l~~~l~~~l~~iw~----- 153 (772)
..||++|+.+...+.. ....++..++-.++......+|+++|+||.|+.... .+.+.+ .++.+..
T Consensus 65 ~~a~~ii~V~D~s~~~-----s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~--~l~~~~~~~~~~ 137 (167)
T cd04161 65 AEAHGLVFVVDSSDDD-----RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYL--SLEKLVNENKSL 137 (167)
T ss_pred cCCCEEEEEEECCchh-----HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhc--CcccccCCCCce
Confidence 8999998876543322 111122222211111111468999999999975332 222221 1222221
Q ss_pred -cCCCCCCccC------CCchhhHHHH
Q 004126 154 -SVPKPQAHME------TPLSEFFNVE 173 (772)
Q Consensus 154 -~i~kpsa~~~------~~l~dlf~~~ 173 (772)
.+.+.|+.++ .++.+-|+=.
T Consensus 138 ~~~~~~Sa~~g~~~~~~~g~~~~~~wl 164 (167)
T cd04161 138 CHIEPCSAIEGLGKKIDPSIVEGLRWL 164 (167)
T ss_pred EEEEEeEceeCCCCccccCHHHHHHHH
Confidence 2444667776 6677776643
No 163
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.69 E-value=1.7e-07 Score=110.15 Aligned_cols=112 Identities=20% Similarity=0.255 Sum_probs=69.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC------------------CCcEEEEecCCCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI------------------EPCTLIMDLEGTDG 62 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~------------------~~qil~lDteG~~s 62 (772)
+|+|+|.+|+|||||||+|.|+.|..-. .+.+|+++-....+.+ ..++.|+||||-.
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e----~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e- 80 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKRE----AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE- 80 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccccc----CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH-
Confidence 4899999999999999999999875421 2346665433322211 1358999999943
Q ss_pred cCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 63 RERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 63 ~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
.|. ......+..+|++++.+...+ |. .......++.+.. ...|+++|+||+|..+
T Consensus 81 --------~f~-~l~~~~~~~aD~~IlVvD~~~-g~-~~qt~e~i~~l~~--------~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 81 --------AFT-NLRKRGGALADLAILIVDINE-GF-KPQTQEALNILRM--------YKTPFVVAANKIDRIP 135 (590)
T ss_pred --------hHH-HHHHHHHhhCCEEEEEEECCc-CC-CHhHHHHHHHHHH--------cCCCEEEEEECCCccc
Confidence 121 122335679999988765432 21 1111222222222 5678999999999753
No 164
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.68 E-value=1.5e-07 Score=93.11 Aligned_cols=155 Identities=11% Similarity=0.037 Sum_probs=87.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||++++.+.+|... ...|+...+..... .....+-++||||... - ..++ ..
T Consensus 5 i~vvG~~~vGKTsL~~~~~~~~f~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~------~~l~---~~ 69 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFISHSFPDY-----HDPTIEDAYKQQARIDNEPALLDILDTAGQAE-F------TAMR---DQ 69 (172)
T ss_pred EEEECCCCCcHHHHHHHHHhCCCCCC-----cCCcccceEEEEEEECCEEEEEEEEeCCCchh-h------HHHh---HH
Confidence 68999999999999999999888531 22333333322222 2235678899999741 1 1122 22
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH-HHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP-VLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~-~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.....+.. ...-++...+...+.......|+++|.||.|+.....+.. ...+..+...-.+.+.
T Consensus 70 ~~~~~d~~ilv~d~~~~~-----Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~ 144 (172)
T cd04141 70 YMRCGEGFIICYSVTDRH-----SFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFET 144 (172)
T ss_pred HhhcCCEEEEEEECCchh-----HHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEE
Confidence 345778887654432221 1111221111111111235789999999999753332321 1111112222246678
Q ss_pred CCccCCCchhhHHHHHhh
Q 004126 159 QAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~ 176 (772)
|+..+.+++++|+.....
T Consensus 145 Sa~~~~~v~~~f~~l~~~ 162 (172)
T cd04141 145 SAALRHYIDDAFHGLVRE 162 (172)
T ss_pred ecCCCCCHHHHHHHHHHH
Confidence 999999999999876543
No 165
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.68 E-value=1e-07 Score=114.11 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=73.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeee-----ecC-------C--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFRE-----MDA-------F--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsi-----ms~-------~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e 67 (772)
|+|+|.+|+|||||+|+|.+..=.+ ++. . .....+|...-.......+.++.|+||||.+.
T Consensus 13 i~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~----- 87 (689)
T TIGR00484 13 IGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD----- 87 (689)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc-----
Confidence 7899999999999999997521111 110 0 00234555554444445678999999999962
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
|.. .+..++..+|++|+.+...+ |... ....+++.+.+ .+.|+++|+||+|+..
T Consensus 88 ----~~~-~~~~~l~~~D~~ilVvda~~-g~~~-~~~~~~~~~~~--------~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 88 ----FTV-EVERSLRVLDGAVAVLDAVG-GVQP-QSETVWRQANR--------YEVPRIAFVNKMDKTG 141 (689)
T ss_pred ----hhH-HHHHHHHHhCEEEEEEeCCC-CCCh-hHHHHHHHHHH--------cCCCEEEEEECCCCCC
Confidence 222 45678899999998886543 2111 12233343333 5678899999999763
No 166
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.67 E-value=1.9e-07 Score=93.00 Aligned_cols=152 Identities=14% Similarity=0.055 Sum_probs=87.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccc---eeeEe-cCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGI---WMARC-AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGi---w~~i~-~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.++|.++||||||+|++.+..|.... .+| -|. ...+. ......+-++||+|.. .+ ....
T Consensus 3 i~v~G~~~vGKSsli~~~~~~~~~~~~-----~~t-~~~~~~~~~~~~~~~~~~~~i~Dt~g~~---------~~-~~~~ 66 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTEDEFSEST-----KST-IGVDFKIKTVYIENKIIKLQIWDTNGQE---------RF-RSLN 66 (188)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCC-----CCc-eeeEEEEEEEEECCEEEEEEEEECCCcH---------HH-HhhH
Confidence 689999999999999999999986411 112 121 11111 1123456789999943 11 1133
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHH--HHhhcCCCCccEEEEEeCCCCCChhchHHH-HHHHHHHHhhc
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV--MMRLFSPRKTTLMFVIRDKTRTPLENLEPV-LREDIQKIWDS 154 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~ev--nl~lf~~~k~~llfVIrd~d~t~~e~l~~~-l~~~l~~iw~~ 154 (772)
...+..+|++|+.....+. .-+..+.+. .+.-+.....|+++|.||.|..+...+... ..+......-.
T Consensus 67 ~~~~~~~d~iilv~d~~~~--------~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 138 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQ--------ESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIP 138 (188)
T ss_pred HHHccCCCEEEEEEECcCH--------HHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCe
Confidence 4456789999886544331 122222221 111122345789999999997643322211 11111222114
Q ss_pred CCCCCCccCCCchhhHHHHHhhc
Q 004126 155 VPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
+...|+..+.+++++|+.....+
T Consensus 139 ~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 139 FFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 66788999999999998766554
No 167
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.67 E-value=1.5e-07 Score=92.25 Aligned_cols=152 Identities=11% Similarity=-0.064 Sum_probs=87.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEe----cCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC----AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~----~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|+|.++||||||+|++++..|. .+..+|-|+-.... ......+.+.||+|.... .. . +.
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-~~-~-----~~-- 67 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTGEFE------KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF-GG-L-----RD-- 67 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCC------CCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhh-cc-c-----cH--
Confidence 689999999999999999977764 23344544332221 122357889999997521 11 1 11
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 157 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~k 157 (772)
.-+..+|++|+.....+.. ...-++..+...... ..+.|+++|.||+|+...+...+. .+....--..+.+
T Consensus 68 -~~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~i~~~--~~~~piiiv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~e 138 (166)
T cd00877 68 -GYYIGGQCAIIMFDVTSRV-----TYKNVPNWHRDLVRV--CGNIPIVLCGNKVDIKDRKVKAKQ-ITFHRKKNLQYYE 138 (166)
T ss_pred -HHhcCCCEEEEEEECCCHH-----HHHHHHHHHHHHHHh--CCCCcEEEEEEchhcccccCCHHH-HHHHHHcCCEEEE
Confidence 1235788887765443211 111122111111111 127999999999997532221121 1221111113667
Q ss_pred CCCccCCCchhhHHHHHhhc
Q 004126 158 PQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~L 177 (772)
.|+..+.+++++|+.....+
T Consensus 139 ~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 139 ISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred EeCCCCCChHHHHHHHHHHH
Confidence 89999999999999877554
No 168
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.67 E-value=1.8e-07 Score=96.54 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=91.9
Q ss_pred EEEeCCCCCChHHHHhHHhCC----------Cee---------------eecCC--CCCCCCcccceeeEecCCCCcEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT----------NFR---------------EMDAF--KGRSQTTKGIWMARCAGIEPCTLI 54 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt----------kfs---------------ims~~--~~r~QTTrGiw~~i~~~~~~qil~ 54 (772)
|+|+|..++|||||+.+|+.. ++. +++.. .....||+.............+.|
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~l 81 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTI 81 (219)
T ss_pred EEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEE
Confidence 789999999999999999732 000 22221 234567888777777667789999
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccc--cCCHHHHHHHHHHHHhhcCCCCccEEEEEeCC
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQ--AANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 132 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~--~~n~~lLktv~evnl~lf~~~k~~llfVIrd~ 132 (772)
+||||.. +|. .....++..+|++|+.+...+.-... +........+ .. .+.+ ..+|+++|+||+
T Consensus 82 iDtpG~~---------~~~-~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~-~~~~--~~~~iiivvNK~ 147 (219)
T cd01883 82 LDAPGHR---------DFV-PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LL-ARTL--GVKQLIVAVNKM 147 (219)
T ss_pred EECCChH---------HHH-HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HH-HHHc--CCCeEEEEEEcc
Confidence 9999953 222 23456778999999988765521000 1111111111 11 1111 236899999999
Q ss_pred CCCC----hh---chHHHHHHHHHHH-h----hcCCCCCCccCCCch
Q 004126 133 TRTP----LE---NLEPVLREDIQKI-W----DSVPKPQAHMETPLS 167 (772)
Q Consensus 133 d~t~----~e---~l~~~l~~~l~~i-w----~~i~kpsa~~~~~l~ 167 (772)
|..+ .+ .+.+.+.+.+..+ + ..+.+.|+..+.++.
T Consensus 148 Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 148 DDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9862 22 2223333334433 2 127788999998876
No 169
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.67 E-value=1.2e-07 Score=112.48 Aligned_cols=149 Identities=11% Similarity=0.057 Sum_probs=89.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCC-------CCCCCCcccce----------------------eeEecCCCCcE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAF-------KGRSQTTKGIW----------------------MARCAGIEPCT 52 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~-------~~r~QTTrGiw----------------------~~i~~~~~~qi 52 (772)
|+|+|.+|+|||||+|+|++..=.|.+.. .....|||+-| .+.....+.++
T Consensus 27 i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~ 106 (632)
T PRK05506 27 FITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKF 106 (632)
T ss_pred EEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCceE
Confidence 68999999999999999998654443210 01344555432 22333456799
Q ss_pred EEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCC
Q 004126 53 LIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 132 (772)
Q Consensus 53 l~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~ 132 (772)
.|+||||.. +|. +....+++.+|++|+.+...+ |. .......+..+... ..+++++|+||+
T Consensus 107 ~liDtPG~~---------~f~-~~~~~~~~~aD~~llVvda~~-g~-~~~t~e~~~~~~~~-------~~~~iivvvNK~ 167 (632)
T PRK05506 107 IVADTPGHE---------QYT-RNMVTGASTADLAIILVDARK-GV-LTQTRRHSFIASLL-------GIRHVVLAVNKM 167 (632)
T ss_pred EEEECCChH---------HHH-HHHHHHHHhCCEEEEEEECCC-Cc-cccCHHHHHHHHHh-------CCCeEEEEEEec
Confidence 999999942 232 234457899999988776532 21 11222223222221 236788999999
Q ss_pred CCCC--hhchH---HHHHHHHHHH-hh--cCCCCCCccCCCchhh
Q 004126 133 TRTP--LENLE---PVLREDIQKI-WD--SVPKPQAHMETPLSEF 169 (772)
Q Consensus 133 d~t~--~e~l~---~~l~~~l~~i-w~--~i~kpsa~~~~~l~dl 169 (772)
|..+ .+.+. ..+.+.+.++ |. .+.+.|+..+.++.+.
T Consensus 168 D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~ 212 (632)
T PRK05506 168 DLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTR 212 (632)
T ss_pred ccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCcccc
Confidence 9863 33222 2232222232 33 3678899999998854
No 170
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.66 E-value=2.1e-07 Score=90.32 Aligned_cols=155 Identities=10% Similarity=0.043 Sum_probs=84.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|+|.+|+|||||+|++++.+|.- ....|+..+....... ....+-++||||....... + ...
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~---~~~ 67 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFIG-----EYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE------Q---LER 67 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCcccc-----ccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc------h---HHH
Confidence 7899999999999999999877731 1233443333222222 2235779999998621111 1 122
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC-CCCccEEEEEeCCCCCChhchHH-HHHHHHHHHhhcCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS-PRKTTLMFVIRDKTRTPLENLEP-VLREDIQKIWDSVPK 157 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~-~~k~~llfVIrd~d~t~~e~l~~-~l~~~l~~iw~~i~k 157 (772)
.+..+|++|+.+...+.. ...-++...+.....-. ....|+++|.||.|......+.. ...+..+..-....+
T Consensus 68 ~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 142 (165)
T cd04146 68 SIRWADGFVLVYSITDRS-----SFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFE 142 (165)
T ss_pred HHHhCCEEEEEEECCCHH-----HHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEE
Confidence 456789987765443221 11111111111111111 24689999999999753332221 111111111123456
Q ss_pred CCCccCC-CchhhHHHHHh
Q 004126 158 PQAHMET-PLSEFFNVEVV 175 (772)
Q Consensus 158 psa~~~~-~l~dlf~~~~~ 175 (772)
.|+..+. +++++|+-...
T Consensus 143 ~Sa~~~~~~v~~~f~~l~~ 161 (165)
T cd04146 143 VSAAEDYDGVHSVFHELCR 161 (165)
T ss_pred eCCCCCchhHHHHHHHHHH
Confidence 7888884 89999986653
No 171
>PLN03110 Rab GTPase; Provisional
Probab=98.66 E-value=1.8e-07 Score=96.20 Aligned_cols=157 Identities=13% Similarity=0.047 Sum_probs=93.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccce--eeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--MARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw--~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|||.+++|||||+|+|.+..|... ..+|-|+= ..... .....+.++||+|-. .| ....
T Consensus 15 i~ivG~~~vGKStLi~~l~~~~~~~~------~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~---------~~-~~~~ 78 (216)
T PLN03110 15 IVLIGDSGVGKSNILSRFTRNEFCLE------SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE---------RY-RAIT 78 (216)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCC------CCCceeEEEEEEEEEECCEEEEEEEEECCCcH---------HH-HHHH
Confidence 68999999999999999999988642 23343321 11122 223477889999842 12 2233
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHH-HHhhcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ-KIWDSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~-~iw~~i~ 156 (772)
...+..+|++|+.....+.. ...-+...++...+. .....|+++|.||+|+.....+.....+.+. ...-.+.
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~-----s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 152 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQ-----TFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFL 152 (216)
T ss_pred HHHhCCCCEEEEEEECCChH-----HHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEE
Confidence 45567899887765443221 111111111111111 1246899999999997543333221122222 2223467
Q ss_pred CCCCccCCCchhhHHHHHhhcCCC
Q 004126 157 KPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
+.|+..+.+++++|+.....+.+.
T Consensus 153 e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 153 ETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999888777653
No 172
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.65 E-value=2.7e-07 Score=91.11 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=88.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCccccee--eEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM--ARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~--~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.++|.++||||||+|++++..|. +.-..|-|.-. -... +...++-+.||||.+ + | ....
T Consensus 3 i~ivG~~~vGKTsli~~~~~~~f~------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---~------~-~~~~ 66 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKDVFD------KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE---R------F-KCIA 66 (170)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC------CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH---H------H-HhhH
Confidence 689999999999999999998884 12233433221 1111 123478899999975 1 1 1133
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc---hHHHHHHHHHHHhhc
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN---LEPVLREDIQKIWDS 154 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~---l~~~l~~~l~~iw~~ 154 (772)
...+..+|++++.....+..-... -...++.+.+ -..+..+|+++|.||.|+.+... .+....+........
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~-~~~~~~~~~~----~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEH-TRQWLEDALK----ENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAE 141 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHH-HHHHHHHHHH----hcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCe
Confidence 455779999988664432110000 0011111111 11123467899999999754322 222222222233334
Q ss_pred CCCCCCccCCCchhhHHHHHhh
Q 004126 155 VPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
....|+..+.+++++|+.....
T Consensus 142 ~~e~Sa~~g~~v~~lf~~l~~~ 163 (170)
T cd04108 142 YWSVSALSGENVREFFFRVAAL 163 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5567999999999999876543
No 173
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.65 E-value=1.6e-07 Score=113.29 Aligned_cols=151 Identities=16% Similarity=0.195 Sum_probs=94.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
.|+|+|..++|||||||+|.+++|.... .+..|.++-.......+..+.|+||||-. + |. .....+
T Consensus 292 vV~ImGhvd~GKTSLl~~Lr~~~v~~~e----~~GIT~~iga~~v~~~~~~ItfiDTPGhe------~---F~-~m~~rg 357 (787)
T PRK05306 292 VVTIMGHVDHGKTSLLDAIRKTNVAAGE----AGGITQHIGAYQVETNGGKITFLDTPGHE------A---FT-AMRARG 357 (787)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCccccc----cCceeeeccEEEEEECCEEEEEEECCCCc------c---ch-hHHHhh
Confidence 3899999999999999999998886422 23455554433344445789999999953 1 11 112245
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC--hhchHHHHHHH--HHHHhh---
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP--LENLEPVLRED--IQKIWD--- 153 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~--~e~l~~~l~~~--l~~iw~--- 153 (772)
+..+|++|+.+...+ |.. ......++.... ...|+++|+||+|+.. .+.+...+.+. +..-|.
T Consensus 358 a~~aDiaILVVdAdd-Gv~-~qT~e~i~~a~~--------~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~v 427 (787)
T PRK05306 358 AQVTDIVVLVVAADD-GVM-PQTIEAINHAKA--------AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDT 427 (787)
T ss_pred hhhCCEEEEEEECCC-CCC-HhHHHHHHHHHh--------cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCc
Confidence 678999988775432 211 111222222222 5688999999999742 33333333221 111132
Q ss_pred cCCCCCCccCCCchhhHHHHHh
Q 004126 154 SVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
.+.+.|+..+.+++++|+....
T Consensus 428 p~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 428 IFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred eEEEEeCCCCCCchHHHHhhhh
Confidence 3678899999999999998654
No 174
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.65 E-value=4.4e-07 Score=89.89 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=86.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.++||||||++++..-.|. + ...|-|.-..........+.++||||.+. + +.....-+
T Consensus 16 i~l~G~~~~GKTsL~~~~~~~~~~--~-----~~~t~~~~~~~~~~~~~~l~l~D~~G~~~---------~-~~~~~~~~ 78 (175)
T smart00177 16 ILMVGLDAAGKTTILYKLKLGESV--T-----TIPTIGFNVETVTYKNISFTVWDVGGQDK---------I-RPLWRHYY 78 (175)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCC--C-----cCCccccceEEEEECCEEEEEEECCCChh---------h-HHHHHHHh
Confidence 689999999999999999754552 1 12233332222233457899999999751 1 11223336
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCCCh---hchHHHHHHH-H-HHHhh
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRTPL---ENLEPVLRED-I-QKIWD 153 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t~~---e~l~~~l~~~-l-~~iw~ 153 (772)
..||++|+.+...+.. -+..+.+...++... ...|+++|.||.|+... +.+.+.+.-. + .+.|
T Consensus 79 ~~ad~ii~v~D~t~~~--------s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~- 149 (175)
T smart00177 79 TNTQGLIFVVDSNDRD--------RIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNW- 149 (175)
T ss_pred CCCCEEEEEEECCCHH--------HHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcE-
Confidence 7899998765443221 122222222222221 46899999999997432 3332221100 0 0112
Q ss_pred cCCCCCCccCCCchhhHHHHHhh
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
.+.+.|+..+.++++.|+.....
T Consensus 150 ~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 150 YIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHH
Confidence 24467999999999999876543
No 175
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.65 E-value=5e-07 Score=90.39 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=88.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.++||||||++++....|.. ...|-|.-..........+.++||||-+ .| +......+
T Consensus 20 i~ivG~~~~GKTsl~~~l~~~~~~~-------~~pt~g~~~~~~~~~~~~~~i~D~~Gq~---------~~-~~~~~~~~ 82 (181)
T PLN00223 20 ILMVGLDAAGKTTILYKLKLGEIVT-------TIPTIGFNVETVEYKNISFTVWDVGGQD---------KI-RPLWRHYF 82 (181)
T ss_pred EEEECCCCCCHHHHHHHHccCCCcc-------ccCCcceeEEEEEECCEEEEEEECCCCH---------HH-HHHHHHHh
Confidence 6899999999999999998766632 1233343222233345678999999943 11 22333446
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCCChhchHHHHHHHHH--HH-hh--
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRTPLENLEPVLREDIQ--KI-WD-- 153 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t~~e~l~~~l~~~l~--~i-w~-- 153 (772)
..+|++|+.+...+... +..+.+...++... ..+|+++|.||.|+...... +.+.+.+. .+ +.
T Consensus 83 ~~a~~iI~V~D~s~~~s--------~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~l~l~~~~~~~~ 153 (181)
T PLN00223 83 QNTQGLIFVVDSNDRDR--------VVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEITDKLGLHSLRQRHW 153 (181)
T ss_pred ccCCEEEEEEeCCcHHH--------HHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCH-HHHHHHhCccccCCCce
Confidence 78999988765433221 11122211222221 46899999999996432211 22222221 11 11
Q ss_pred cCCCCCCccCCCchhhHHHHHhhc
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
.+.+.|+..+.++.+.|+.....+
T Consensus 154 ~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 154 YIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHH
Confidence 144568999999999998876544
No 176
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.65 E-value=1.4e-07 Score=108.47 Aligned_cols=156 Identities=11% Similarity=0.043 Sum_probs=90.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeee---------------------------ecCC--CCCCCCcccceeeEecCCCCcE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFRE---------------------------MDAF--KGRSQTTKGIWMARCAGIEPCT 52 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsi---------------------------ms~~--~~r~QTTrGiw~~i~~~~~~qi 52 (772)
|+|+|..++|||||+++|+...=.| ||.. ..+.+.|...-......++.++
T Consensus 30 i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i 109 (474)
T PRK05124 30 FLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKF 109 (474)
T ss_pred EEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCcEE
Confidence 6899999999999999998642111 1110 0111223333333444567899
Q ss_pred EEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCC
Q 004126 53 LIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 132 (772)
Q Consensus 53 l~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~ 132 (772)
+|+|||| | ..|.+ ....++..+|++|+.+...+ |-.. .....+..+.. . ..+++++|+||+
T Consensus 110 ~~iDTPG-h--------~~f~~-~~~~~l~~aD~allVVDa~~-G~~~-qt~~~~~l~~~-----l--g~~~iIvvvNKi 170 (474)
T PRK05124 110 IIADTPG-H--------EQYTR-NMATGASTCDLAILLIDARK-GVLD-QTRRHSFIATL-----L--GIKHLVVAVNKM 170 (474)
T ss_pred EEEECCC-c--------HHHHH-HHHHHHhhCCEEEEEEECCC-Cccc-cchHHHHHHHH-----h--CCCceEEEEEee
Confidence 9999999 4 23433 44556799999998887532 2111 11112222211 1 235789999999
Q ss_pred CCCC--hhchH---HHHHHHHHHH----hhcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 133 TRTP--LENLE---PVLREDIQKI----WDSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 133 d~t~--~e~l~---~~l~~~l~~i----w~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
|..+ .+.+. +.+...+..+ ...+++.|+..+.++.+.- ..+|+|
T Consensus 171 D~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~----~~~~wy 223 (474)
T PRK05124 171 DLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS----ESMPWY 223 (474)
T ss_pred ccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc----cccccc
Confidence 9863 22222 2222222221 2346788999999988653 246776
No 177
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.64 E-value=3.2e-07 Score=89.94 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=67.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.++||||||+|++.+.+|.. ....| -|.-.-........+.++||+|-.. - +......+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~-----~~~pt-~g~~~~~i~~~~~~l~i~Dt~G~~~-~---------~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE-----SVVPT-TGFNSVAIPTQDAIMELLEIGGSQN-L---------RKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc-----ccccc-CCcceEEEeeCCeEEEEEECCCCcc-h---------hHHHHHHH
Confidence 6899999999999999999987742 12223 2332222334567889999999651 1 11222346
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC-CCCccEEEEEeCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS-PRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~-~~k~~llfVIrd~d~t~ 136 (772)
..||++|+.+...+... +..+.+....+.. ...+|+++|.||.|+..
T Consensus 66 ~~ad~ii~V~D~t~~~s--------~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 66 SGSQGLIFVVDSADSER--------LPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred hhCCEEEEEEECCCHHH--------HHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 78999987665433221 1111111111211 25789999999999754
No 178
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.64 E-value=1.2e-07 Score=101.90 Aligned_cols=155 Identities=17% Similarity=0.118 Sum_probs=106.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC-CcEEEEecCCCC---CcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE-PCTLIMDLEGTD---GRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~-~qil~lDteG~~---s~er~e~~~~fe~k~a 77 (772)
|.+||.||+|||||||+|-..|=.|-+ .+=||=..-+|...-++ .|+=+-|.||+- +..||.. .+|.+.
T Consensus 199 vGLVG~PNAGKSTLL~als~AKpkVa~----YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG-~~FLrH-- 271 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLNALSRAKPKVAH----YAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLG-YKFLRH-- 271 (366)
T ss_pred cceecCCCCcHHHHHHHhhccCCcccc----cceeeeccccceeeccccceeEeccCccccccccccCccc-HHHHHH--
Confidence 568999999999999999999888755 57799888888776555 469999999995 1234433 577766
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHH--HhhcCC--CCccEEEEEeCCCCC-ChhchHHHHHHHHHHHh
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVM--MRLFSP--RKTTLMFVIRDKTRT-PLENLEPVLREDIQKIW 152 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evn--l~lf~~--~k~~llfVIrd~d~t-~~e~l~~~l~~~l~~iw 152 (772)
+.-++++++.+++..--. .+-+..+..++ |.+|.+ .+.|.++|.||+|.. ..+++...|...++.
T Consensus 272 ---iER~~~l~fVvD~s~~~~-----~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~-- 341 (366)
T KOG1489|consen 272 ---IERCKGLLFVVDLSGKQL-----RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQN-- 341 (366)
T ss_pred ---HHhhceEEEEEECCCccc-----CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCC--
Confidence 578899988776532210 11222222222 445554 578899999999984 333333444444431
Q ss_pred hcCCCCCCccCCCchhhHHHH
Q 004126 153 DSVPKPQAHMETPLSEFFNVE 173 (772)
Q Consensus 153 ~~i~kpsa~~~~~l~dlf~~~ 173 (772)
..|.+.+|..+.++.++++..
T Consensus 342 ~~V~pvsA~~~egl~~ll~~l 362 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGL 362 (366)
T ss_pred CcEEEeeeccccchHHHHHHH
Confidence 247888999999988887754
No 179
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.64 E-value=2.6e-07 Score=109.27 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=96.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC-CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG-IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~-~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
.|+++|..++|||||+|+|.|+..+-..+. .+...|-..-.+.... ....+-|+||||- ..|. +....
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE-~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh---------e~fi-~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEE-KKRGMTIDLGYAYWPQPDGRVLGFIDVPGH---------EKFL-SNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhc-ccCCceEEeeeEEEecCCCcEEEEEECCCH---------HHHH-HHHHH
Confidence 478999999999999999999764433221 1222333222122222 2345679999995 2343 45677
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH---HHHHHHHHH-h--h
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP---VLREDIQKI-W--D 153 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~---~l~~~l~~i-w--~ 153 (772)
+++.+|++++.+...+ |- .......+..+.. . ..+.+++|+||+|..+.+.+.. .+.+.+... + .
T Consensus 71 g~~~~D~~lLVVda~e-g~-~~qT~ehl~il~~-----l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~ 141 (614)
T PRK10512 71 GVGGIDHALLVVACDD-GV-MAQTREHLAILQL-----T--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEA 141 (614)
T ss_pred HhhcCCEEEEEEECCC-CC-cHHHHHHHHHHHH-----c--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 7899999988775422 21 1122222322221 1 2344689999999977655543 233333222 2 3
Q ss_pred cCCCCCCccCCCchhhHHHHHhhcC
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
.+.+.|+..+.+++++++.+....+
T Consensus 142 ~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 142 KLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 4678899999999999998876444
No 180
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.61 E-value=1.8e-07 Score=91.13 Aligned_cols=135 Identities=16% Similarity=0.082 Sum_probs=92.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.+||+.++|||||+++|-|..... .|-|+.-- .+ -++||||-. -| +..+.+..+-..
T Consensus 4 imliG~~g~GKTTL~q~L~~~~~~~-----~KTq~i~~---------~~--~~IDTPGEy-iE-----~~~~y~aLi~ta 61 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGEEIRY-----KKTQAIEY---------YD--NTIDTPGEY-IE-----NPRFYHALIVTA 61 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCc-----CccceeEe---------cc--cEEECChhh-ee-----CHHHHHHHHHHH
Confidence 6799999999999999999987753 34443210 11 348999987 33 344555556666
Q ss_pred hcccEEEEeecccccc-ccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC-ChhchHHHHHHHHHHH-hhcCCCC
Q 004126 82 AVSDIVLINMWCHDIG-REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT-PLENLEPVLREDIQKI-WDSVPKP 158 (772)
Q Consensus 82 a~sDvliiNl~~~dig-~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t-~~e~l~~~l~~~l~~i-w~~i~kp 158 (772)
.+||+|++.....+-. .++ +=+..+ ..+|++=||.|+|.. +.++++. ..+.|... +.+|...
T Consensus 62 ~dad~V~ll~dat~~~~~~p----P~fa~~----------f~~pvIGVITK~Dl~~~~~~i~~-a~~~L~~aG~~~if~v 126 (143)
T PF10662_consen 62 QDADVVLLLQDATEPRSVFP----PGFASM----------FNKPVIGVITKIDLPSDDANIER-AKKWLKNAGVKEIFEV 126 (143)
T ss_pred hhCCEEEEEecCCCCCccCC----chhhcc----------cCCCEEEEEECccCccchhhHHH-HHHHHHHcCCCCeEEE
Confidence 6999998766553321 111 011122 247899999999987 5555554 34556554 8889999
Q ss_pred CCccCCCchhhHHHH
Q 004126 159 QAHMETPLSEFFNVE 173 (772)
Q Consensus 159 sa~~~~~l~dlf~~~ 173 (772)
|+.++.++++|.+..
T Consensus 127 S~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 127 SAVTGEGIEELKDYL 141 (143)
T ss_pred ECCCCcCHHHHHHHH
Confidence 999999999998754
No 181
>PRK00007 elongation factor G; Reviewed
Probab=98.61 E-value=3.3e-07 Score=109.94 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=75.7
Q ss_pred EEEeCCCCCChHHHHhHHh---CCCee---------eecCC--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLF---GTNFR---------EMDAF--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf---Gtkfs---------ims~~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e 67 (772)
|+|||.+|+|||||.|+|+ |.-=. +||.. .....+|...-.......+.++.|+||||..
T Consensus 13 i~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~------ 86 (693)
T PRK00007 13 IGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV------ 86 (693)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH------
Confidence 7899999999999999997 43111 11110 0123455555444444457899999999953
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
+|+. .+..|+..+|++|+.+.... |- +.....++..+.+ .+.|++++|||+|..+
T Consensus 87 ---~f~~-ev~~al~~~D~~vlVvda~~-g~-~~qt~~~~~~~~~--------~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 ---DFTI-EVERSLRVLDGAVAVFDAVG-GV-EPQSETVWRQADK--------YKVPRIAFVNKMDRTG 141 (693)
T ss_pred ---HHHH-HHHHHHHHcCEEEEEEECCC-Cc-chhhHHHHHHHHH--------cCCCEEEEEECCCCCC
Confidence 3555 47888999999988776422 21 2233444454444 5678889999999764
No 182
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.60 E-value=3.9e-07 Score=100.14 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=97.4
Q ss_pred CEEEeCCCCCChHHHHhHHh------CCCeeeecCCCCCCCCcccceee-----------------Eec-----------
Q 004126 1 MCHIFFVIMTGKSTLLNHLF------GTNFREMDAFKGRSQTTKGIWMA-----------------RCA----------- 46 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf------Gtkfsims~~~~r~QTTrGiw~~-----------------i~~----------- 46 (772)
+|.|.|+||+|||||++.|. |.++.|++-- +.+.-|.|.++| ...
T Consensus 58 ~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~D-p~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~ 136 (332)
T PRK09435 58 RIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVD-PSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARK 136 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeC-CCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchHHH
Confidence 47899999999999999865 4567776532 111112222211 100
Q ss_pred ---------CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHH-HHHHHHHHh
Q 004126 47 ---------GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLL-KTVFQVMMR 116 (772)
Q Consensus 47 ---------~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lL-ktv~evnl~ 116 (772)
.....++|+||.|+. + .+ ......||++++.+. .+ .|+....+ +.++|
T Consensus 137 ~~~~~~~~~~~g~d~viieT~Gv~--q-s~----------~~i~~~aD~vlvv~~---p~--~gd~iq~~k~gi~E---- 194 (332)
T PRK09435 137 TRETMLLCEAAGYDVILVETVGVG--Q-SE----------TAVAGMVDFFLLLQL---PG--AGDELQGIKKGIME---- 194 (332)
T ss_pred HHHHHHHHhccCCCEEEEECCCCc--c-ch----------hHHHHhCCEEEEEec---CC--chHHHHHHHhhhhh----
Confidence 024789999999997 1 11 113568999887643 12 22322222 23555
Q ss_pred hcCCCCccEEEEEeCCCCCChhch---HHHHHHHHHH------Hh-hcCCCCCCccCCCchhhHHHHHhhcCCCccchhH
Q 004126 117 LFSPRKTTLMFVIRDKTRTPLENL---EPVLREDIQK------IW-DSVPKPQAHMETPLSEFFNVEVVALSSFEEKEEL 186 (772)
Q Consensus 117 lf~~~k~~llfVIrd~d~t~~e~l---~~~l~~~l~~------iw-~~i~kpsa~~~~~l~dlf~~~~~~Lph~~~~~~~ 186 (772)
..-+||+||+|+.+.... ...+.+.+.. -| ..|.+.|+.++.+++++++.....+|+. ++...
T Consensus 195 ------~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l-~~sg~ 267 (332)
T PRK09435 195 ------LADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL-TASGE 267 (332)
T ss_pred ------hhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh-ccCCh
Confidence 123799999998654433 2334444432 26 4677889999999999999999999854 34444
Q ss_pred HHH
Q 004126 187 FKE 189 (772)
Q Consensus 187 F~~ 189 (772)
+.+
T Consensus 268 l~~ 270 (332)
T PRK09435 268 FAA 270 (332)
T ss_pred HHH
Confidence 444
No 183
>PLN03108 Rab family protein; Provisional
Probab=98.59 E-value=2.5e-07 Score=94.71 Aligned_cols=157 Identities=13% Similarity=-0.003 Sum_probs=85.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+++|||||+|+|.+.+|..... +....+.+.+.-........+-++||+|.. + + .......+
T Consensus 9 ivivG~~gvGKStLi~~l~~~~~~~~~~--~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~---~------~-~~~~~~~~ 76 (210)
T PLN03108 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITIDNKPIKLQIWDTAGQE---S------F-RSITRSYY 76 (210)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCC--CCccceEEEEEEEECCEEEEEEEEeCCCcH---H------H-HHHHHHHh
Confidence 6899999999999999999998875321 111122222222222222356789999953 1 1 11223334
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.....+.... ..++...+. +........|+++|.||.|+.....+. +...+.....--.+...|+
T Consensus 77 ~~ad~~vlv~D~~~~~s~-----~~l~~~~~~-~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 150 (210)
T PLN03108 77 RGAAGALLVYDITRRETF-----NHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA 150 (210)
T ss_pred ccCCEEEEEEECCcHHHH-----HHHHHHHHH-HHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 578888765544332211 111111111 111122578999999999975432222 1112222222113567788
Q ss_pred ccCCCchhhHHHHHhh
Q 004126 161 HMETPLSEFFNVEVVA 176 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~ 176 (772)
..+.++++.|+-....
T Consensus 151 ~~~~~v~e~f~~l~~~ 166 (210)
T PLN03108 151 KTAQNVEEAFIKTAAK 166 (210)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 8999999988765543
No 184
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.59 E-value=3.3e-07 Score=109.74 Aligned_cols=152 Identities=16% Similarity=0.246 Sum_probs=94.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec----CCCCcEEEEecCCCCCcCCCCCccHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA----GIEPCTLIMDLEGTDGRERGEDDTAFEKQS 76 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~----~~~~qil~lDteG~~s~er~e~~~~fe~k~ 76 (772)
.|+|+|..++|||||||+|.++.+..-. .+..|.++-..... .....+.|+||||-. .|. ..
T Consensus 246 ~V~IvGhvdvGKTSLld~L~~~~~~~~e----~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe---------~F~-~m 311 (742)
T CHL00189 246 IVTILGHVDHGKTTLLDKIRKTQIAQKE----AGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE---------AFS-SM 311 (742)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccc----CCccccccceEEEEEEecCCceEEEEEECCcHH---------HHH-HH
Confidence 3899999999999999999999887522 23344433221111 134789999999952 332 23
Q ss_pred HHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC--hhchHHHHHHH--HHHHh
Q 004126 77 ALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP--LENLEPVLRED--IQKIW 152 (772)
Q Consensus 77 alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~--~e~l~~~l~~~--l~~iw 152 (772)
...++..+|++|+.+...+ |.. ......++.+. ....|+++|+||+|..+ .+.+.+.+... +..-|
T Consensus 312 r~rg~~~aDiaILVVDA~d-Gv~-~QT~E~I~~~k--------~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 312 RSRGANVTDIAILIIAADD-GVK-PQTIEAINYIQ--------AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKW 381 (742)
T ss_pred HHHHHHHCCEEEEEEECcC-CCC-hhhHHHHHHHH--------hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhh
Confidence 3456789999988775433 211 11122233222 25688999999999753 23333333221 11113
Q ss_pred h---cCCCCCCccCCCchhhHHHHHhh
Q 004126 153 D---SVPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 153 ~---~i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
. .+.+.|+..+.+++++|+.....
T Consensus 382 g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 382 GGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred CCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 2 36688999999999999976554
No 185
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.58 E-value=6.5e-07 Score=93.27 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=90.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCc-----------cccee----------------------------
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTT-----------KGIWM---------------------------- 42 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTT-----------rGiw~---------------------------- 42 (772)
|.++|.+++|||||++.+..-.|.- +++..+ ||+-.
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~-----~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 76 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDN-----GRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDI 76 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCC-----CCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccc
Confidence 7899999999999999999655532 111111 12211
Q ss_pred eEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhh--cccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC
Q 004126 43 ARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALA--VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP 120 (772)
Q Consensus 43 ~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa--~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~ 120 (772)
.++......+.|+||||.. +|.+ .+..++. .+|++++.+.... |. ......++..+.+
T Consensus 77 ~~~~~~~~~i~liDtpG~~---------~~~~-~~~~~~~~~~~D~~llVvda~~-g~-~~~d~~~l~~l~~-------- 136 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHE---------RYLK-TTLFGLTGYAPDYAMLVVAANA-GI-IGMTKEHLGLALA-------- 136 (224)
T ss_pred eeeeeCCcEEEEEECCCcH---------HHHH-HHHHhhcccCCCEEEEEEECCC-CC-cHHHHHHHHHHHH--------
Confidence 1111224578899999952 3433 3455664 6899988776421 21 1222334444444
Q ss_pred CCccEEEEEeCCCCCChhchHHHHH---HHHHH-----------------------HhhcC---CCCCCccCCCchhhHH
Q 004126 121 RKTTLMFVIRDKTRTPLENLEPVLR---EDIQK-----------------------IWDSV---PKPQAHMETPLSEFFN 171 (772)
Q Consensus 121 ~k~~llfVIrd~d~t~~e~l~~~l~---~~l~~-----------------------iw~~i---~kpsa~~~~~l~dlf~ 171 (772)
...|+++|+||+|..+.+.+...+. +.+.. -|..+ ...|+.++.++++|..
T Consensus 137 ~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~ 216 (224)
T cd04165 137 LNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHA 216 (224)
T ss_pred cCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHH
Confidence 5678999999999876655554333 22221 02223 3348889999988877
Q ss_pred HHHhhcCC
Q 004126 172 VEVVALSS 179 (772)
Q Consensus 172 ~~~~~Lph 179 (772)
+. ..||+
T Consensus 217 ~L-~~lp~ 223 (224)
T cd04165 217 FL-NLLPL 223 (224)
T ss_pred HH-HhcCC
Confidence 54 44554
No 186
>PLN03126 Elongation factor Tu; Provisional
Probab=98.58 E-value=3.2e-07 Score=105.48 Aligned_cols=126 Identities=16% Similarity=0.134 Sum_probs=76.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeee----------ecCCCCCCCCccccee----eEecCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFRE----------MDAFKGRSQTTKGIWM----ARCAGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsi----------ms~~~~r~QTTrGiw~----~i~~~~~~qil~lDteG~~s~er~e 67 (772)
|+|+|.+++|||||+|+|.+..-.+ ||.. ...-.||+-+ .....++.++.|+||||-.
T Consensus 84 i~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~--~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~------ 155 (478)
T PLN03126 84 IGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAA--PEERARGITINTATVEYETENRHYAHVDCPGHA------ 155 (478)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCC--hhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH------
Confidence 6899999999999999999743332 2211 1112234422 2223456789999999953
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCcc-EEEEEeCCCCCChhchHHHHHH
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LMFVIRDKTRTPLENLEPVLRE 146 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~-llfVIrd~d~t~~e~l~~~l~~ 146 (772)
+|.. ....++..+|+.|+.+...+ |. .+.....+..+.. ...| +++++||+|..+.+...+.+.+
T Consensus 156 ---~f~~-~~~~g~~~aD~ailVVda~~-G~-~~qt~e~~~~~~~--------~gi~~iIvvvNK~Dl~~~~~~~~~i~~ 221 (478)
T PLN03126 156 ---DYVK-NMITGAAQMDGAILVVSGAD-GP-MPQTKEHILLAKQ--------VGVPNMVVFLNKQDQVDDEELLELVEL 221 (478)
T ss_pred ---HHHH-HHHHHHhhCCEEEEEEECCC-CC-cHHHHHHHHHHHH--------cCCCeEEEEEecccccCHHHHHHHHHH
Confidence 3443 44778889999998776532 21 1122223333322 3445 8899999998765544443333
Q ss_pred HHH
Q 004126 147 DIQ 149 (772)
Q Consensus 147 ~l~ 149 (772)
++.
T Consensus 222 ~i~ 224 (478)
T PLN03126 222 EVR 224 (478)
T ss_pred HHH
Confidence 333
No 187
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.58 E-value=3.9e-07 Score=102.29 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=83.7
Q ss_pred EEEeCCCCCChHHHHhHHhCC----------CeeeecCC--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT----------NFREMDAF--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDD 69 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt----------kfsims~~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~ 69 (772)
|+|+|..++|||||+|+|.|. ...+|+.. .....+|...-......+..++.|+||||..
T Consensus 15 i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~-------- 86 (394)
T TIGR00485 15 IGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA-------- 86 (394)
T ss_pred EEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH--------
Confidence 789999999999999999864 11233321 1224566665444444456689999999963
Q ss_pred cHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCcc-EEEEEeCCCCCChhchHH----HH
Q 004126 70 TAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LMFVIRDKTRTPLENLEP----VL 144 (772)
Q Consensus 70 ~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~-llfVIrd~d~t~~e~l~~----~l 144 (772)
+|. .....+++.+|++++.+...+ |. .......+..+.. ...| +++|+||+|+.+.+...+ .+
T Consensus 87 -~f~-~~~~~~~~~~D~~ilVvda~~-g~-~~qt~e~l~~~~~--------~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i 154 (394)
T TIGR00485 87 -DYV-KNMITGAAQMDGAILVVSATD-GP-MPQTREHILLARQ--------VGVPYIVVFLNKCDMVDDEELLELVEMEV 154 (394)
T ss_pred -HHH-HHHHHHHhhCCEEEEEEECCC-CC-cHHHHHHHHHHHH--------cCCCEEEEEEEecccCCHHHHHHHHHHHH
Confidence 244 344667789999988776533 21 1122233333322 3444 557899999876543332 33
Q ss_pred HHHHHHH-h----hcCCCCCCccC
Q 004126 145 REDIQKI-W----DSVPKPQAHME 163 (772)
Q Consensus 145 ~~~l~~i-w----~~i~kpsa~~~ 163 (772)
.+.+..+ + -.+.+.|++.+
T Consensus 155 ~~~l~~~~~~~~~~~ii~vSa~~g 178 (394)
T TIGR00485 155 RELLSEYDFPGDDTPIIRGSALKA 178 (394)
T ss_pred HHHHHhcCCCccCccEEECccccc
Confidence 3344333 2 12445566654
No 188
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.56 E-value=3.5e-07 Score=89.81 Aligned_cols=150 Identities=12% Similarity=0.085 Sum_probs=87.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+++|||||++++.+..|.. ...+|+...+....... ...+.++||||...... ..-.
T Consensus 3 ~~i~G~~~~GKtsl~~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 67 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTTNGYPT-----EYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK----------LRPL 67 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC-----CCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc----------cccc
Confidence 6899999999999999999887743 23456544443332222 34678899999741111 1123
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhc--CCCCccEEEEEeCCCCCChh------------chH-HHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF--SPRKTTLMFVIRDKTRTPLE------------NLE-PVL 144 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf--~~~k~~llfVIrd~d~t~~e------------~l~-~~l 144 (772)
.+..+|++|+.....+.. =++.+.+..+..+ .....|+++|.||.|+.+.. .+. +..
T Consensus 68 ~~~~a~~~i~v~d~~~~~--------sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 139 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPS--------SFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRA 139 (173)
T ss_pred ccCCCcEEEEEEECCCHH--------HHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHH
Confidence 567899887644332211 1111111111111 11458999999999975322 111 111
Q ss_pred HHHHHHHhh-cCCCCCCccCCCchhhHHHHH
Q 004126 145 REDIQKIWD-SVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 145 ~~~l~~iw~-~i~kpsa~~~~~l~dlf~~~~ 174 (772)
.+.....+. .+.+.|+..+.+++++|+...
T Consensus 140 ~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 140 KALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 122222333 577899999999999998643
No 189
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.55 E-value=8e-07 Score=88.17 Aligned_cols=151 Identities=14% Similarity=0.058 Sum_probs=86.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCccccee--eEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM--ARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~--~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|||||||+.++.+..|.- ....|+-..+. -.......++.++||+|-+ +. . .....
T Consensus 4 i~iiG~~~vGKSsli~~~~~~~f~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~---~~----~---~~~~~ 68 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYTTNAFPG-----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE---DY----D---RLRPL 68 (174)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-----cCCCcceeeeEEEEEECCEEEEEEEEECCCch---hh----h---hhhhh
Confidence 6799999999999999999877742 11223322211 1122233578899999964 11 1 12223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCChhc------------hH-HHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTPLEN------------LE-PVL 144 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~~e~------------l~-~~l 144 (772)
.+..+|++|+.....+.. -+..+.+..++.+. ....|+++|.||.|+.+... +. +..
T Consensus 69 ~~~~~d~~ilv~d~~~~~--------sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 140 (174)
T cd01871 69 SYPQTDVFLICFSLVSPA--------SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 140 (174)
T ss_pred hcCCCCEEEEEEECCCHH--------HHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHH
Confidence 467899998755443321 12222211111111 24689999999998753211 11 111
Q ss_pred HHHHHHHhh-cCCCCCCccCCCchhhHHHHHh
Q 004126 145 REDIQKIWD-SVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 145 ~~~l~~iw~-~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
.+...+++. .+.+.|+.++.+++++|+....
T Consensus 141 ~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 141 LAMAKEIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHHHcCCcEEEEecccccCCHHHHHHHHHH
Confidence 112222332 4678899999999999987654
No 190
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.55 E-value=2.5e-07 Score=95.26 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=75.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHH---
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL--- 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~al--- 78 (772)
|.++|+.+|||||+.|.|+|......+. +...+|+..-.........++.|+||||+...... + ....+.+..
T Consensus 3 IlllG~tGsGKSs~~N~ilg~~~f~~~~--~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~-~-~~~~~~i~~~l~ 78 (212)
T PF04548_consen 3 ILLLGKTGSGKSSLGNSILGKEVFKSGS--SAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGS-D-EEIIREIKRCLS 78 (212)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS-SS--T--TTSS--SS-EEEEEEETTEEEEEEE--SSEETTEE-H-HHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcccceeecc--ccCCcccccceeeeeecceEEEEEeCCCCCCCccc-H-HHHHHHHHHHHH
Confidence 5789999999999999999988754332 33456777766666667789999999999644432 1 333333322
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC-CCccEEEEEeCCCCCChhchHHHHH
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTPLENLEPVLR 145 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~-~k~~llfVIrd~d~t~~e~l~~~l~ 145 (772)
......+++|+.+ +.++........++.+ .++|++ --..+++|+...+..+...+++.+.
T Consensus 79 ~~~~g~ha~llVi---~~~r~t~~~~~~l~~l----~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~ 139 (212)
T PF04548_consen 79 LCSPGPHAFLLVI---PLGRFTEEDREVLELL----QEIFGEEIWKHTIVVFTHADELEDDSLEDYLK 139 (212)
T ss_dssp HTTT-ESEEEEEE---ETTB-SHHHHHHHHHH----HHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHH
T ss_pred hccCCCeEEEEEE---ecCcchHHHHHHHHHH----HHHccHHHHhHhhHHhhhccccccccHHHHHh
Confidence 2233478887655 4456665555444444 457876 2344566666554333333444333
No 191
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.54 E-value=1.1e-06 Score=85.53 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=87.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccce--eeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--MARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw--~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.++|.+++|||||++++.+..|.- ..-.|.|.- +...... ...+-+.||+|.. +. . ...
T Consensus 3 i~vvG~~~~GKTsli~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~---~~------~-~~~ 66 (161)
T cd04117 3 LLLIGDSGVGKTCLLCRFTDNEFHS------SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE---RY------Q-TIT 66 (161)
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCC------CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH---hH------H-hhH
Confidence 6899999999999999999988852 223344432 2222222 2467789999954 11 1 112
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh-cCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD-SVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~-~i~ 156 (772)
...+..+|++++.....+.. ...-++...+..... .....|+++|-||.|+.....+.......+.+.|. ...
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~-----sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 140 (161)
T cd04117 67 KQYYRRAQGIFLVYDISSER-----SYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFF 140 (161)
T ss_pred HHHhcCCcEEEEEEECCCHH-----HHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 23456889987754433221 111122211111111 23468999999999975433322212222223332 456
Q ss_pred CCCCccCCCchhhHHHHHh
Q 004126 157 KPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~ 175 (772)
+.|+..+.+++++|+-...
T Consensus 141 e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 141 ETSACTNSNIKESFTRLTE 159 (161)
T ss_pred EEeCCCCCCHHHHHHHHHh
Confidence 7789999999999987653
No 192
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.53 E-value=5.1e-07 Score=106.44 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=94.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCC--------cccceeeEe---------cCCCCcEEEEecCCCCCcC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQT--------TKGIWMARC---------AGIEPCTLIMDLEGTDGRE 64 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QT--------TrGiw~~i~---------~~~~~qil~lDteG~~s~e 64 (772)
++|||.+++|||||+++|....-.+.... ...|+ +||+-+... .....++.|+||||...
T Consensus 6 i~IIGh~d~GKTTL~~rLl~~~g~i~~~~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d-- 82 (595)
T TIGR01393 6 FSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD-- 82 (595)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCcccc-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH--
Confidence 68999999999999999987422211100 01122 244432211 12235789999999861
Q ss_pred CCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh--hchHH
Q 004126 65 RGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL--ENLEP 142 (772)
Q Consensus 65 r~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~--e~l~~ 142 (772)
|. .....+++.+|++|+.+...+ |. .......+....+ ...|+++|+||+|+... +...+
T Consensus 83 -------F~-~~v~~~l~~aD~aILVvDat~-g~-~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~~~~~~~~ 144 (595)
T TIGR01393 83 -------FS-YEVSRSLAACEGALLLVDAAQ-GI-EAQTLANVYLALE--------NDLEIIPVINKIDLPSADPERVKK 144 (595)
T ss_pred -------HH-HHHHHHHHhCCEEEEEecCCC-CC-CHhHHHHHHHHHH--------cCCCEEEEEECcCCCccCHHHHHH
Confidence 21 233456889999988765432 10 1111111111222 45789999999997532 22222
Q ss_pred HHHHHHHHHhhcCCCCCCccCCCchhhHHHHHhhcCCCcc
Q 004126 143 VLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEE 182 (772)
Q Consensus 143 ~l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~~~Lph~~~ 182 (772)
.+.+.+..-+.++...|+..+.+++++|+.....+|....
T Consensus 145 el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~ 184 (595)
T TIGR01393 145 EIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPKG 184 (595)
T ss_pred HHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCCC
Confidence 2222221002246778999999999999999999997643
No 193
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.53 E-value=8.6e-07 Score=95.17 Aligned_cols=60 Identities=22% Similarity=0.078 Sum_probs=40.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCC-----CCCCCcccc-eeeEecCCC--CcEEEEecCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFK-----GRSQTTKGI-WMARCAGIE--PCTLIMDLEGTD 61 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~-----~r~QTTrGi-w~~i~~~~~--~qil~lDteG~~ 61 (772)
|.++|..|+|||||+|+|||..+...+... ...+|+.-. ......... .++.++||||+.
T Consensus 7 I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfg 74 (276)
T cd01850 7 IMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFG 74 (276)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcc
Confidence 679999999999999999999988654210 134454322 222222222 479999999996
No 194
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.53 E-value=1.2e-06 Score=91.20 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=87.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+++|||||+|++.+-+|.- .. +|-|.-..........+.++||+|.. +. .. .....+
T Consensus 3 IvivG~~~vGKTSLi~r~~~~~f~~------~~-~Tig~~~~~~~~~~~~l~iwDt~G~e---~~---~~----l~~~~~ 65 (220)
T cd04126 3 VVLLGDMNVGKTSLLHRYMERRFKD------TV-STVGGAFYLKQWGPYNISIWDTAGRE---QF---HG----LGSMYC 65 (220)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC------CC-CccceEEEEEEeeEEEEEEEeCCCcc---cc---hh----hHHHHh
Confidence 6899999999999999999998852 12 23332222222234578999999975 11 11 222336
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc----------------hHHHHH
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN----------------LEPVLR 145 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~----------------l~~~l~ 145 (772)
..+|++|+.....+.. ...-++..+....+. .....|+++|.||.|+...+. ....-.
T Consensus 66 ~~ad~~IlV~Dvt~~~-----Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~ 139 (220)
T cd04126 66 RGAAAVILTYDVSNVQ-----SLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTL 139 (220)
T ss_pred ccCCEEEEEEECCCHH-----HHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCH
Confidence 7899998765443321 111121111111111 124688999999999754100 011011
Q ss_pred HHHHHHhh------------------cCCCCCCccCCCchhhHHHHHhhc
Q 004126 146 EDIQKIWD------------------SVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 146 ~~l~~iw~------------------~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
++...++. .....|+.++.++.++|......+
T Consensus 140 ~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 140 EDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 11212222 234679999999999998877544
No 195
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.52 E-value=7.8e-07 Score=93.39 Aligned_cols=115 Identities=18% Similarity=0.134 Sum_probs=69.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeee------------ecCC--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFRE------------MDAF--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsi------------ms~~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e 67 (772)
|+|+|.+|+|||||.|+|.+..=.+ ++.. ..+.++|.+.-.......+.++.++||||...
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~----- 76 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD----- 76 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc-----
Confidence 7899999999999999998642111 1100 01112222223333444678999999999851
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
|. ..+..++..+|.+++.+...+ |. ......+++.+.+ ...|+++++||+|...
T Consensus 77 ----f~-~~~~~~l~~aD~~IlVvd~~~-g~-~~~~~~~~~~~~~--------~~~P~iivvNK~D~~~ 130 (237)
T cd04168 77 ----FI-AEVERSLSVLDGAILVISAVE-GV-QAQTRILWRLLRK--------LNIPTIIFVNKIDRAG 130 (237)
T ss_pred ----hH-HHHHHHHHHhCeEEEEEeCCC-CC-CHHHHHHHHHHHH--------cCCCEEEEEECccccC
Confidence 11 234557788999988776543 21 1111112222222 5678899999999753
No 196
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.51 E-value=1.2e-06 Score=87.53 Aligned_cols=151 Identities=15% Similarity=0.083 Sum_probs=85.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|+|++++|||||+|++.+-.|.- ....|+...++...... ...+.++||+|....... +. .
T Consensus 4 i~ivG~~g~GKStLl~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-------~~---~ 68 (187)
T cd04129 4 LVIVGDGACGKTSLLSVFTLGEFPE-----EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL-------RP---L 68 (187)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCc-----ccCCcccceEEEEEEECCEEEEEEEEECCCChhcccc-------ch---h
Confidence 6899999999999999998666631 12234444444333222 245678899997522211 11 2
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCChh----------chH-HHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTPLE----------NLE-PVLRE 146 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~~e----------~l~-~~l~~ 146 (772)
.+..+|++++.....+ ...+..+.+..+.... ....|+++|.||+|+.+.. ... ....+
T Consensus 69 ~~~~a~~~llv~~i~~--------~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 140 (187)
T cd04129 69 SYSKAHVILIGFAVDT--------PDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKR 140 (187)
T ss_pred hcCCCCEEEEEEECCC--------HHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHH
Confidence 3578888876543211 1122222111111111 1368999999999864211 111 11111
Q ss_pred HHHHHh-hcCCCCCCccCCCchhhHHHHHh
Q 004126 147 DIQKIW-DSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 147 ~l~~iw-~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
..+.++ ......|+.++.+++++|+....
T Consensus 141 ~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 170 (187)
T cd04129 141 VAKEIGAKKYMECSALTGEGVDDVFEAATR 170 (187)
T ss_pred HHHHhCCcEEEEccCCCCCCHHHHHHHHHH
Confidence 122232 24678899999999999987653
No 197
>PRK12739 elongation factor G; Reviewed
Probab=98.51 E-value=6.3e-07 Score=107.51 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=75.5
Q ss_pred EEEeCCCCCChHHHHhHHhCC-----Ceeeec-------CC--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT-----NFREMD-------AF--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt-----kfsims-------~~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e 67 (772)
|+|||.+++|||||.|+|+.. ++..++ .. .....+|...-.......+.++.|+||||.+
T Consensus 11 i~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~------ 84 (691)
T PRK12739 11 IGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV------ 84 (691)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH------
Confidence 789999999999999999752 111111 00 0123455554444444467899999999975
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
+|+. .+.-++..+|++|+.+...+ |. ......++..+.+ ...|++++|||+|..+
T Consensus 85 ---~f~~-e~~~al~~~D~~ilVvDa~~-g~-~~qt~~i~~~~~~--------~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 ---DFTI-EVERSLRVLDGAVAVFDAVS-GV-EPQSETVWRQADK--------YGVPRIVFVNKMDRIG 139 (691)
T ss_pred ---HHHH-HHHHHHHHhCeEEEEEeCCC-CC-CHHHHHHHHHHHH--------cCCCEEEEEECCCCCC
Confidence 2444 57888999999998887533 21 2222334444443 5678899999999864
No 198
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.50 E-value=1.3e-06 Score=92.20 Aligned_cols=154 Identities=10% Similarity=0.065 Sum_probs=90.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|||||||+|++.+..|.. ....|+........... ..++-++||+|.+. . ..++ ..
T Consensus 3 VvvlG~~gvGKTSLi~r~~~~~f~~-----~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~---~----~~~~---~~ 67 (247)
T cd04143 3 MVVLGASKVGKTAIVSRFLGGRFEE-----QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHP---F----PAMR---RL 67 (247)
T ss_pred EEEECcCCCCHHHHHHHHHcCCCCC-----CCCCChhHhEEEEEEECCEEEEEEEEECCCChh---h----hHHH---HH
Confidence 7899999999999999999888852 12334433333222222 34677999999641 1 1122 23
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhh-----c---CCCCccEEEEEeCCCCCChhch-HHHHHHHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRL-----F---SPRKTTLMFVIRDKTRTPLENL-EPVLREDIQK 150 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~l-----f---~~~k~~llfVIrd~d~t~~e~l-~~~l~~~l~~ 150 (772)
.+..+|++|+.....+. ....-++.+.+-.++. + .....|+++|.||+|+.....+ .+.+.+.+..
T Consensus 68 ~~~~ad~iIlVfdv~~~-----~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~ 142 (247)
T cd04143 68 SILTGDVFILVFSLDNR-----ESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG 142 (247)
T ss_pred HhccCCEEEEEEeCCCH-----HHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh
Confidence 45689998775433221 1111122222211111 0 1146899999999997532211 1233333322
Q ss_pred H-hhcCCCCCCccCCCchhhHHHHHh
Q 004126 151 I-WDSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 151 i-w~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
. .-.+.+.|+..+.+++++|+..+.
T Consensus 143 ~~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 143 DENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 2 123678899999999999998765
No 199
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.50 E-value=1.6e-06 Score=91.94 Aligned_cols=162 Identities=19% Similarity=0.243 Sum_probs=100.6
Q ss_pred EEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhh
Q 004126 3 HIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALA 82 (772)
Q Consensus 3 aIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa 82 (772)
-|+|+.++|||.|+|+||+...+.++.. +-||+---+-+.......++++||||+....++ |.+ -++...--|.
T Consensus 43 Li~G~TG~GKSSliNALF~~~~~~v~~v---g~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~--D~~-~r~~~~d~l~ 116 (296)
T COG3596 43 LLMGATGAGKSSLINALFQGEVKEVSKV---GVGTDITTRLRLSYDGENLVLWDTPGLGDGKDK--DAE-HRQLYRDYLP 116 (296)
T ss_pred EEecCCCCcHHHHHHHHHhccCceeeec---ccCCCchhhHHhhccccceEEecCCCcccchhh--hHH-HHHHHHHHhh
Confidence 3899999999999999998888777732 334433323333445689999999999754444 133 3556667778
Q ss_pred cccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC------------ChhchHHHHHHHHH-
Q 004126 83 VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT------------PLENLEPVLREDIQ- 149 (772)
Q Consensus 83 ~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t------------~~e~l~~~l~~~l~- 149 (772)
..|++++.+...|-. -+-...++..|.-. ..+.+++|||+-.|.+ |...+++.+.+..+
T Consensus 117 ~~DLvL~l~~~~dra--L~~d~~f~~dVi~~------~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~ 188 (296)
T COG3596 117 KLDLVLWLIKADDRA--LGTDEDFLRDVIIL------GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA 188 (296)
T ss_pred hccEEEEeccCCCcc--ccCCHHHHHHHHHh------ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence 899886655543322 22344455555431 1347889998877643 23344444443333
Q ss_pred --HHhhcCCCC---CCccCCCchhhHHHHHhhcC
Q 004126 150 --KIWDSVPKP---QAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 150 --~iw~~i~kp---sa~~~~~l~dlf~~~~~~Lp 178 (772)
+...++.+. ++-..-+++.+....+..||
T Consensus 189 ~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 189 LGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 234444433 33345678888888888888
No 200
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.50 E-value=9.7e-07 Score=91.81 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=63.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC-eeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN-FREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk-fsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
+|+|+|++++|||||+|.|.+.. ..+.+ ...|.+ .+.+....++.|+||||-. ..++-
T Consensus 41 ~i~ivG~~~~GKstl~~~l~~~~~~~~~~-------~~~g~i-~i~~~~~~~i~~vDtPg~~-------------~~~l~ 99 (225)
T cd01882 41 VVAVVGPPGVGKTTLIKSLVKNYTKQNIS-------DIKGPI-TVVTGKKRRLTFIECPNDI-------------NAMID 99 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCccc-------cccccE-EEEecCCceEEEEeCCchH-------------HHHHH
Confidence 48999999999999999999852 11111 122221 2333467899999999732 22344
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCcc-EEEEEeCCCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LMFVIRDKTRTP 136 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~-llfVIrd~d~t~ 136 (772)
++..+|++++.+.... |. ......+++.+.+ ...| +++|+||+|..+
T Consensus 100 ~ak~aDvVllviDa~~-~~-~~~~~~i~~~l~~--------~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 100 IAKVADLVLLLIDASF-GF-EMETFEFLNILQV--------HGFPRVMGVLTHLDLFK 147 (225)
T ss_pred HHHhcCEEEEEEecCc-CC-CHHHHHHHHHHHH--------cCCCeEEEEEeccccCC
Confidence 5688999987665421 11 1112233444433 3344 556999999863
No 201
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.49 E-value=1.3e-06 Score=102.85 Aligned_cols=111 Identities=22% Similarity=0.252 Sum_probs=66.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC------------------CCcEEEEecCCCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI------------------EPCTLIMDLEGTDG 62 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~------------------~~qil~lDteG~~s 62 (772)
+|+|+|.+++|||||||+|.|+.+..-. .+..|+++=....+.+ -..+.|+||||..
T Consensus 8 ~V~i~Gh~~~GKTSLl~~l~~~~v~~~~----~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e- 82 (586)
T PRK04004 8 IVVVLGHVDHGKTTLLDKIRGTAVAAKE----AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE- 82 (586)
T ss_pred EEEEECCCCCCHHHHHHHHhCcccccCC----CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH-
Confidence 4899999999999999999998665322 1223333211111110 0137899999964
Q ss_pred cCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 63 RERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 63 ~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
.|.. .....++.+|++|+.+...+ |. .......++.+.. ...|+++|+||+|..
T Consensus 83 --------~f~~-~~~~~~~~aD~~IlVvDa~~-g~-~~qt~e~i~~~~~--------~~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 --------AFTN-LRKRGGALADIAILVVDINE-GF-QPQTIEAINILKR--------RKTPFVVAANKIDRI 136 (586)
T ss_pred --------HHHH-HHHHhHhhCCEEEEEEECCC-CC-CHhHHHHHHHHHH--------cCCCEEEEEECcCCc
Confidence 1211 12235678999988775532 21 1122223332222 567899999999975
No 202
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.47 E-value=1.3e-06 Score=89.60 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=67.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCc-------------ccceeeEe---------cCCCCcEEEEecCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTT-------------KGIWMARC---------AGIEPCTLIMDLEG 59 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTT-------------rGiw~~i~---------~~~~~qil~lDteG 59 (772)
|+|+|..++|||||+++|.+..+.+... ++++.. ||+-+... ......+.++||||
T Consensus 3 v~iiG~~~~GKTtL~~~l~~~~~~~~~~--~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 3 VAIAGHLHHGKTSLLDMLIEQTHDLTPS--GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCccc--ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 7899999999999999999877665311 111211 22211100 01235789999999
Q ss_pred CCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 60 TDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 60 ~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
.. +| ...+..++..+|++++.+...+ |. ......+++.... ...|+++|+||.|..
T Consensus 81 ~~---------~f-~~~~~~~~~~aD~~llVvD~~~-~~-~~~~~~~~~~~~~--------~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HV---------NF-MDEVAAALRLSDGVVLVVDVVE-GV-TSNTERLIRHAIL--------EGLPIVLVINKIDRL 136 (213)
T ss_pred Cc---------ch-HHHHHHHHHhCCEEEEEEECCC-CC-CHHHHHHHHHHHH--------cCCCEEEEEECcccC
Confidence 75 12 2345677889999988775532 11 0111112222221 458899999999975
No 203
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.46 E-value=2.7e-07 Score=88.61 Aligned_cols=54 Identities=22% Similarity=0.185 Sum_probs=43.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD 61 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~ 61 (772)
|.++|.+|+|||||+|+|.|.++..++ ..+++||+...-.. +..+.++||||+-
T Consensus 86 ~~~~G~~~vGKstlin~l~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~i~DtpG~~ 139 (141)
T cd01857 86 IGLVGYPNVGKSSLINALVGKKKVSVS---ATPGKTKHFQTIFL---TPTITLCDCPGLV 139 (141)
T ss_pred EEEECCCCCCHHHHHHHHhCCCceeeC---CCCCcccceEEEEe---CCCEEEEECCCcC
Confidence 689999999999999999999886555 35678888654322 3478999999985
No 204
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=3.5e-06 Score=91.38 Aligned_cols=217 Identities=19% Similarity=0.182 Sum_probs=118.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCee---------eecCC---CCCCCCcccceeeEecCCCCcEEEEecCCCCCc-----
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFR---------EMDAF---KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR----- 63 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfs---------ims~~---~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~----- 63 (772)
+|.++|.||+|||||||.|-|-... -+|+. -++.||- +|=.-| ....|||+||+-+.+.
T Consensus 190 VIgvlG~QgsGKStllslLaans~~~dyr~yvFRpvS~Ea~E~~~~qt~-~Id~~i---~q~~i~fldtqpl~sfsi~e~ 265 (491)
T KOG4181|consen 190 VIGVLGGQGSGKSTLLSLLAANSLDYDYRQYVFRPVSPEADECIFAQTH-KIDPNI---GQKSILFLDTQPLQSFSIRER 265 (491)
T ss_pred EEEeecCCCccHHHHHHHHhccChHHhhHHHhcccCChhhhhhhcccee-cccccc---ccceEEeeccccccchHHHhh
Confidence 4789999999999999999986432 22221 1333332 222111 1346888888766432
Q ss_pred ----------CCCCCccH---HHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHH--HhhcCC-------C
Q 004126 64 ----------ERGEDDTA---FEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVM--MRLFSP-------R 121 (772)
Q Consensus 64 ----------er~e~~~~---fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evn--l~lf~~-------~ 121 (772)
+.+.+... +--+++-|-|.+|++||+... |.++..-+.+|++.-.+- +-.|.+ .
T Consensus 266 ~i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d----~~~d~~lir~L~~Ae~~rP~laifrh~~~~~r~~ 341 (491)
T KOG4181|consen 266 HILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVID----GLADEQLIRLLNAAERLRPTLAIFRHCKGYVRDH 341 (491)
T ss_pred hhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEec----chhHHHHHHHHHHHHhhCcccCcccccccccccc
Confidence 22222122 223667888999999998764 222222222333332221 223433 4
Q ss_pred CccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCccCCCchhhHHHHHh-hcCCCccchh------HHHHHHHHH
Q 004126 122 KTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVV-ALSSFEEKEE------LFKEQVASL 194 (772)
Q Consensus 122 k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~~-~Lph~~~~~~------~F~~~v~~L 194 (772)
++.|+||-+|....+.+--+ .+.+.+.-+.+.+++.+.-.+.-+.....++ .||--...++ .|.|.+.++
T Consensus 342 ~p~lVFv~~KA~riDf~pr~---rerl~~~~~~l~~~S~lpyKg~~~~~~~nvfreL~pe~~~~~~~afl~~~~E~v~e~ 418 (491)
T KOG4181|consen 342 MPQLVFVRAKAHRIDFEPRQ---RERLDKKLAYLYGPSGLPYKGRGDARCLNVFRELLPEVSSNKATAFLSCLGELVREF 418 (491)
T ss_pred CcceEEEeccccccccChHH---HHHHHHHHHHHhcccCCccccchhhhhhhcccccCccccchhhhHHHHhhHHHHHhh
Confidence 78899998888544333211 1223322233445666554455555555544 2333333322 788999999
Q ss_pred HhhhcccCCCCCCCCCCCCcccCCchhHhHHHHHHHHHhc
Q 004126 195 RQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEIWKVIKEN 234 (772)
Q Consensus 195 r~~f~~~~~~~~~~~~~~~~ip~dg~~~y~~~iW~~I~~n 234 (772)
|.|+...-.+-+. -.|.-.=.-+.+.||..|+..
T Consensus 419 rer~~kg~~~~~~------~~~~~dek~~~~~~~~~ir~~ 452 (491)
T KOG4181|consen 419 RERILKGCTRISM------CHTSTDEKELSEAIWFEIRAE 452 (491)
T ss_pred hHhhcCCCcccee------eccccccchHHHHHHHHHHHH
Confidence 9999842222111 111111124678999999983
No 205
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.46 E-value=1.8e-06 Score=85.81 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=86.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEe--cCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC--AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~--~~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+++|||||++++.+-+|.- ....|+...+.-.. ......+.++||+|-..-. .....
T Consensus 4 i~vvG~~~vGKTsl~~~~~~~~f~~-----~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~~ 68 (175)
T cd01874 4 CVVVGDGAVGKTCLLISYTTNKFPS-----EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD----------RLRPL 68 (175)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC-----CCCCceeeeeEEEEEECCEEEEEEEEECCCccchh----------hhhhh
Confidence 6899999999999999999988831 12233322222111 1223577899999985211 11223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHH-HHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHH-------------H
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLK-TVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL-------------R 145 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLk-tv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l-------------~ 145 (772)
.+..+|++|+.....+.. ...-++ ...+. ++.. ..+.|+++|.||.|+.+.+.+.+.+ .
T Consensus 69 ~~~~a~~~ilv~d~~~~~-----s~~~~~~~w~~~-i~~~-~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~ 141 (175)
T cd01874 69 SYPQTDVFLVCFSVVSPS-----SFENVKEKWVPE-ITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGE 141 (175)
T ss_pred hcccCCEEEEEEECCCHH-----HHHHHHHHHHHH-HHHh-CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHH
Confidence 567899987755432211 111111 11111 1111 1468999999999875432221111 1
Q ss_pred HHHHHHh-hcCCCCCCccCCCchhhHHHHHh
Q 004126 146 EDIQKIW-DSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 146 ~~l~~iw-~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
+....+. ..+.+.|+.++.+++++|+....
T Consensus 142 ~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 142 KLARDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred HHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 1111232 24678899999999999987543
No 206
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.45 E-value=1.5e-06 Score=91.61 Aligned_cols=121 Identities=17% Similarity=0.110 Sum_probs=73.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCccccee-----------eEecC-----------------------
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-----------ARCAG----------------------- 47 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~-----------~i~~~----------------------- 47 (772)
+++||+||+|||||||+|.|..|-..+ .+.|||-... .+...
T Consensus 29 i~vvG~~~~GKSt~l~~i~g~~~~~~~----~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 29 IAVVGGQSAGKSSVLENFVGRDFLPRG----SGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred EEEEcCCCccHHHHHHHHhCCCccccC----CCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 789999999999999999998743322 2344433221 11100
Q ss_pred ------------------CCCcEEEEecCCCCCcCC-CC--CccHHHHHHHHHHhhc-ccEEEEeeccc-cccccccCCH
Q 004126 48 ------------------IEPCTLIMDLEGTDGRER-GE--DDTAFEKQSALFALAV-SDIVLINMWCH-DIGREQAANK 104 (772)
Q Consensus 48 ------------------~~~qil~lDteG~~s~er-~e--~~~~fe~k~alfALa~-sDvliiNl~~~-dig~~~~~n~ 104 (772)
.-.++.++||||+...+. ++ +...-..+.+..++.. .+++++.+... ++. .....
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~--~~d~l 182 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA--NSDAL 182 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC--chhHH
Confidence 116899999999974432 11 1234456778888884 55776665442 222 11111
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 105 PLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 105 ~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
.+.+.+ .+...+.++|++|.|...
T Consensus 183 ~ia~~l--------d~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 183 KLAKEV--------DPQGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHH--------HHcCCcEEEEEECCCCCC
Confidence 222222 336789999999998753
No 207
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.44 E-value=4.2e-07 Score=97.89 Aligned_cols=56 Identities=25% Similarity=0.221 Sum_probs=45.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~ 63 (772)
|.++|.||||||||+|+|.|.+...++ ..+.|||+...-.. +.++.++||||+--+
T Consensus 124 ~~~~G~pnvGKSsliN~l~~~~~~~~~---~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~ 179 (287)
T PRK09563 124 AMIIGIPNVGKSTLINRLAGKKIAKTG---NRPGVTKAQQWIKL---GKGLELLDTPGILWP 179 (287)
T ss_pred EEEECCCCCCHHHHHHHHhcCCccccC---CCCCeEEEEEEEEe---CCcEEEEECCCcCCC
Confidence 679999999999999999999886666 46789999753222 357999999999733
No 208
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.44 E-value=1.6e-06 Score=97.81 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=94.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEe-------------------cC-----------CCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC-------------------AG-----------IEPC 51 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~-------------------~~-----------~~~q 51 (772)
|+|+|.+++|||||+++|-|..+.... ....||+-+... +. ....
T Consensus 7 i~iiG~~~~GKSTL~~~Lt~~~~d~~~-----~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 7 IGMVGHVDHGKTTLTKALTGVWTDTHS-----EELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred EEEEccCCCCHHHHHHHHhCeecccCH-----hHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 789999999999999999775432211 111222222111 00 1246
Q ss_pred EEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeC
Q 004126 52 TLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRD 131 (772)
Q Consensus 52 il~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd 131 (772)
+-++||||-. .|. +....+++.+|++|+.+...+ |.........+..+ ++. ..+++++|+||
T Consensus 82 i~liDtPGh~---------~f~-~~~~~g~~~aD~aIlVVDa~~-g~~~~qt~e~l~~l-----~~~--gi~~iIVvvNK 143 (406)
T TIGR03680 82 VSFVDAPGHE---------TLM-ATMLSGAALMDGALLVIAANE-PCPQPQTKEHLMAL-----EII--GIKNIVIVQNK 143 (406)
T ss_pred EEEEECCCHH---------HHH-HHHHHHHHHCCEEEEEEECCC-CccccchHHHHHHH-----HHc--CCCeEEEEEEc
Confidence 8899999942 343 445667788999988876643 11011112222222 111 23578999999
Q ss_pred CCCCChhchHHH---HHHHHHHHh---hcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 132 KTRTPLENLEPV---LREDIQKIW---DSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 132 ~d~t~~e~l~~~---l~~~l~~iw---~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
+|+.+.+..... +.+.+...| -.+.+.|+..+.+++++++.....+|..
T Consensus 144 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~ 198 (406)
T TIGR03680 144 IDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTP 198 (406)
T ss_pred cccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCC
Confidence 998765544322 222222221 2366789999999999999998878754
No 209
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.43 E-value=1.6e-06 Score=97.95 Aligned_cols=149 Identities=10% Similarity=0.076 Sum_probs=88.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCC------------------------ee---eecCC--CCCCCCcccceeeEecCCCCcE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN------------------------FR---EMDAF--KGRSQTTKGIWMARCAGIEPCT 52 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk------------------------fs---ims~~--~~r~QTTrGiw~~i~~~~~~qi 52 (772)
|+|+|..++|||||+++|+... |. +||.. ......|...-.......+.++
T Consensus 3 ~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~ 82 (406)
T TIGR02034 3 FLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKF 82 (406)
T ss_pred EEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEE
Confidence 7899999999999999997421 10 22211 1122344555444555567899
Q ss_pred EEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCC
Q 004126 53 LIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 132 (772)
Q Consensus 53 l~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~ 132 (772)
.|+||||.. +|.. ....+++.+|++|+.+...+ |. .......+..+.. . ..+++++|+||+
T Consensus 83 ~liDtPGh~---------~f~~-~~~~~~~~aD~allVVda~~-G~-~~qt~~~~~~~~~-----~--~~~~iivviNK~ 143 (406)
T TIGR02034 83 IVADTPGHE---------QYTR-NMATGASTADLAVLLVDARK-GV-LEQTRRHSYIASL-----L--GIRHVVLAVNKM 143 (406)
T ss_pred EEEeCCCHH---------HHHH-HHHHHHhhCCEEEEEEECCC-CC-ccccHHHHHHHHH-----c--CCCcEEEEEEec
Confidence 999999932 3433 34568899999998776532 21 1122222222222 1 235688999999
Q ss_pred CCCC--hhchH---HHHHHHHHHH-hh--cCCCCCCccCCCchhh
Q 004126 133 TRTP--LENLE---PVLREDIQKI-WD--SVPKPQAHMETPLSEF 169 (772)
Q Consensus 133 d~t~--~e~l~---~~l~~~l~~i-w~--~i~kpsa~~~~~l~dl 169 (772)
|..+ .+.++ +.+...+..+ +. .+.+.|+..+.++.+.
T Consensus 144 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 144 DLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 9863 22222 2222222222 22 4678899999988764
No 210
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.43 E-value=3.2e-07 Score=89.43 Aligned_cols=53 Identities=17% Similarity=0.143 Sum_probs=42.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGT 60 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~ 60 (772)
+.++|.||+|||||+|.|.|.+-..++ ..+-||++...... +..+.++||||+
T Consensus 103 ~~~~G~~~~GKstlin~l~~~~~~~~~---~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 103 VGVIGYPNVGKSSVINALLNKLKLKVG---NVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred EEEEccCCCCHHHHHHHHHcccccccc---CCCCcccceEEEEe---cCCEEEEECCCC
Confidence 679999999999999999998754444 34678888665443 367999999996
No 211
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.43 E-value=1.6e-06 Score=92.68 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=66.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecC--CCC---CCCCcc---------cc----eeeEecCCCCcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDA--FKG---RSQTTK---------GI----WMARCAGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~--~~~---r~QTTr---------Gi----w~~i~~~~~~qil~lDteG~~s~ 63 (772)
|+|+|.+|+|||||+|+|....=.|-.. ..+ .+.|+. |+ ........+..+.++||||..
T Consensus 5 i~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~-- 82 (267)
T cd04169 5 FAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE-- 82 (267)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch--
Confidence 7899999999999999998532111110 000 111221 11 111223356789999999964
Q ss_pred CCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 64 ERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 64 er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
+|. ..+..++..+|++|+.+...+ |... ....+++... ..+.|+++++||+|...
T Consensus 83 -------df~-~~~~~~l~~aD~~IlVvda~~-g~~~-~~~~i~~~~~--------~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 -------DFS-EDTYRTLTAVDSAVMVIDAAK-GVEP-QTRKLFEVCR--------LRGIPIITFINKLDREG 137 (267)
T ss_pred -------HHH-HHHHHHHHHCCEEEEEEECCC-CccH-HHHHHHHHHH--------hcCCCEEEEEECCccCC
Confidence 122 224556789999988776532 2111 1111222221 15678999999998643
No 212
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.40 E-value=6.7e-07 Score=100.72 Aligned_cols=161 Identities=20% Similarity=0.104 Sum_probs=102.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
+-|+|.||+|||.++|.+--.+..|- +.+=|||+.++|...-..-...++||||+..++-. +.+..|+++ .-||
T Consensus 171 lllcG~PNVGKSSf~~~vtradvevq----pYaFTTksL~vGH~dykYlrwQViDTPGILD~plE-drN~IEmqs-ITAL 244 (620)
T KOG1490|consen 171 LLVCGYPNVGKSSFNNKVTRADDEVQ----PYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEE-DRNIIEMQI-ITAL 244 (620)
T ss_pred EEEecCCCCCcHhhcccccccccccC----CcccccchhhhhhhhhheeeeeecCCccccCcchh-hhhHHHHHH-HHHH
Confidence 35899999999999999988887763 57889999999998777777889999999977754 346666654 4455
Q ss_pred hc-ccEEEEeecc-ccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH---HHHHHHHHHh-hcC
Q 004126 82 AV-SDIVLINMWC-HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP---VLREDIQKIW-DSV 155 (772)
Q Consensus 82 a~-sDvliiNl~~-~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~---~l~~~l~~iw-~~i 155 (772)
|. =-+|++-|.. ..-|...++-..|.+.+ -.||. .+++++|+||+|.-+.+.|.+ .+.+.+...- -.|
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsI----KpLFa--NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v 318 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSI----KPLFA--NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKV 318 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHh----HHHhc--CCceEEEeecccccCccccCHHHHHHHHHHHhccCceE
Confidence 42 2234443433 22332222222233322 22443 678999999999766665553 3333332221 224
Q ss_pred CCCCCccCCCchhhHHHHH
Q 004126 156 PKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~ 174 (772)
...|.....++-++-+...
T Consensus 319 ~~tS~~~eegVm~Vrt~AC 337 (620)
T KOG1490|consen 319 VQTSCVQEEGVMDVRTTAC 337 (620)
T ss_pred EEecccchhceeeHHHHHH
Confidence 5667777777766655433
No 213
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.40 E-value=4.3e-07 Score=99.56 Aligned_cols=74 Identities=27% Similarity=0.323 Sum_probs=54.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|||.||||||||+|+|.|.+...++ .+|-|||+...=.. +..+.++||||+--+... + . ...+..+
T Consensus 135 v~vvG~PNVGKSslIN~L~~k~~~~~s---~~PG~Tk~~q~i~~---~~~i~LlDtPGii~~~~~-~-~----~~v~~~l 202 (322)
T COG1161 135 VGVVGYPNVGKSTLINRLLGKKVAKTS---NRPGTTKGIQWIKL---DDGIYLLDTPGIIPPKFD-D-D----ELVLLKL 202 (322)
T ss_pred EEEEcCCCCcHHHHHHHHhcccceeeC---CCCceecceEEEEc---CCCeEEecCCCcCCCCcc-c-h----HHHhhcc
Confidence 679999999999999999999997777 57899999764333 355999999999844432 2 1 4444555
Q ss_pred hcccEE
Q 004126 82 AVSDIV 87 (772)
Q Consensus 82 a~sDvl 87 (772)
+..+.+
T Consensus 203 ~~~~~I 208 (322)
T COG1161 203 APKGEI 208 (322)
T ss_pred cccccc
Confidence 555544
No 214
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.39 E-value=2e-06 Score=86.27 Aligned_cols=155 Identities=13% Similarity=0.075 Sum_probs=84.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.++||||||+|++.+..|.-. ...|.-..+..... .....+.++||+|-..-. .....
T Consensus 3 ivivG~~~vGKTsli~~~~~~~~~~~-----~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~----------~l~~~ 67 (189)
T cd04134 3 VVVLGDGACGKTSLLNVFTRGYFPQV-----YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD----------RLRSL 67 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCc-----cCCcceeeeEEEEEECCEEEEEEEEECCCChhcc----------ccccc
Confidence 68999999999999999999888531 11122111211111 123467899999964111 01112
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-------------HHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-------------PVLRE 146 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-------------~~l~~ 146 (772)
.+..+|++|+.....+..-.+......+..+.+ . ....|+++|.||.|+....... +...+
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~-----~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 141 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIRE-----H-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLA 141 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----h-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHH
Confidence 357889887654333221111000001122211 1 1468999999999975332111 11111
Q ss_pred HHHHHh-hcCCCCCCccCCCchhhHHHHHhhc
Q 004126 147 DIQKIW-DSVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 147 ~l~~iw-~~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
...... -...+.|+..+.+++++|+.....+
T Consensus 142 ~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 142 VAKRINALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred HHHHcCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 111221 1356789999999999998765433
No 215
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.39 E-value=4.4e-06 Score=85.42 Aligned_cols=132 Identities=12% Similarity=0.174 Sum_probs=76.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|+++||||||+|+|.+.+|...- +-|+...-..... .....+.++||||-. .+ +.....
T Consensus 3 vll~G~~~sGKTsL~~~l~~~~~~~t~-----~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~---------~~-~~~~~~ 67 (203)
T cd04105 3 VLLLGPSDSGKTALFTKLTTGKYRSTV-----TSIEPNVATFILNSEGKGKKFRLVDVPGHP---------KL-RDKLLE 67 (203)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCcc-----CcEeecceEEEeecCCCCceEEEEECCCCH---------HH-HHHHHH
Confidence 689999999999999999998764321 1112221111111 224568899999954 11 223344
Q ss_pred Hhhcc-cEEEEeeccccccccccCCHHHHHHHHHHHHhh-cCCCCccEEEEEeCCCCC---ChhchHHHHHHHHHHH
Q 004126 80 ALAVS-DIVLINMWCHDIGREQAANKPLLKTVFQVMMRL-FSPRKTTLMFVIRDKTRT---PLENLEPVLREDIQKI 151 (772)
Q Consensus 80 ALa~s-DvliiNl~~~dig~~~~~n~~lLktv~evnl~l-f~~~k~~llfVIrd~d~t---~~e~l~~~l~~~l~~i 151 (772)
.+..+ +.+|+.+...+.. ..-......+.++.... ..+...|+++|.||.|+. +.+.+++.+...++++
T Consensus 68 ~~~~~~~~vV~VvD~~~~~---~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~ 141 (203)
T cd04105 68 TLKNSAKGIVFVVDSATFQ---KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTL 141 (203)
T ss_pred HHhccCCEEEEEEECccch---hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHH
Confidence 45666 8888877654321 00001111111211110 112578999999999863 5566777777777766
No 216
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.37 E-value=2e-06 Score=95.66 Aligned_cols=198 Identities=20% Similarity=0.191 Sum_probs=103.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCee-eecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFR-EMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfs-ims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|+|.+|+|||||+|+|.|.+=. .-++.+|...||...-.-..+ ..+++.+.|.||+..+... ...|..+ .-
T Consensus 38 IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~--~~~Yl~~---~~ 111 (376)
T PF05049_consen 38 IAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFP--PEEYLKE---VK 111 (376)
T ss_dssp EEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS----HHHHHHH---TT
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCC--HHHHHHH---cc
Confidence 789999999999999999984221 112234666788888766553 3478999999999755432 2566554 35
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCC-----------C-ChhchHHHHHHHH
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR-----------T-PLENLEPVLREDI 148 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~-----------t-~~e~l~~~l~~~l 148 (772)
+..-|++||... +|.......|.+.+.+ .+++++||-.|+|. + +.+.+.+.++++.
T Consensus 112 ~~~yD~fiii~s----~rf~~ndv~La~~i~~--------~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c 179 (376)
T PF05049_consen 112 FYRYDFFIIISS----ERFTENDVQLAKEIQR--------MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENC 179 (376)
T ss_dssp GGG-SEEEEEES----SS--HHHHHHHHHHHH--------TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHH
T ss_pred ccccCEEEEEeC----CCCchhhHHHHHHHHH--------cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHH
Confidence 678898887432 4555555566788877 78999999988863 1 2233333444432
Q ss_pred H-HHh-hcCCCC-----CC--ccCCCchhhHHHHHhhcCCCcc----------chhHHHHHHHHHHhhhcccCCCCCCCC
Q 004126 149 Q-KIW-DSVPKP-----QA--HMETPLSEFFNVEVVALSSFEE----------KEELFKEQVASLRQRFYHSVAPGGLAG 209 (772)
Q Consensus 149 ~-~iw-~~i~kp-----sa--~~~~~l~dlf~~~~~~Lph~~~----------~~~~F~~~v~~Lr~~f~~~~~~~~~~~ 209 (772)
. .+- ..+..| |. +....+..|-+....-||...- -.+.-......|++++-... +..
T Consensus 180 ~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~~fllsLp~is~~~I~kKk~~lk~~Iw~~A----l~s 255 (376)
T PF05049_consen 180 LENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRHAFLLSLPNISEAAIEKKKESLKQKIWLEA----LKS 255 (376)
T ss_dssp HHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHHHHHHHS---SHHHHHHHHHHHHHHHHHHH----HHT
T ss_pred HHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHH----HHH
Confidence 2 221 123333 22 2333445555666666764321 13333344555665554211 112
Q ss_pred CCCCcccCCchh
Q 004126 210 DRRGVVPASGFS 221 (772)
Q Consensus 210 ~~~~~ip~dg~~ 221 (772)
.....+|+.|+.
T Consensus 256 ~~~a~iP~~g~~ 267 (376)
T PF05049_consen 256 AAVATIPVPGLS 267 (376)
T ss_dssp --BSS-CCCSS-
T ss_pred HHhccCCCcccc
Confidence 223468888876
No 217
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.37 E-value=2.1e-06 Score=97.35 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=91.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCC--ee-----------------------eecCC--CCCCCCcccceeeEecCCCCcEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN--FR-----------------------EMDAF--KGRSQTTKGIWMARCAGIEPCTLI 54 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk--fs-----------------------ims~~--~~r~QTTrGiw~~i~~~~~~qil~ 54 (772)
|+|+|..++|||||+++|+... +. ++|.. .....+|...-.......+.++.|
T Consensus 10 v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~i 89 (426)
T TIGR00483 10 VAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTI 89 (426)
T ss_pred EEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEE
Confidence 7899999999999999998421 11 12211 112345555555555556789999
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeecccccccc-ccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCC
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGRE-QAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 133 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~-~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d 133 (772)
+|||| | .+|. +....++..+|++|+.+...+-.-+ .......+... +.+ ..+++++|+||+|
T Consensus 90 iDtpG-h--------~~f~-~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-----~~~--~~~~iIVviNK~D 152 (426)
T TIGR00483 90 VDCPG-H--------RDFI-KNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-----RTL--GINQLIVAINKMD 152 (426)
T ss_pred EECCC-H--------HHHH-HHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-----HHc--CCCeEEEEEEChh
Confidence 99999 3 1233 3445567889999887765432100 01111111111 111 2357999999999
Q ss_pred CCC--hhch---HHHHHHHHHHH-h----hcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 134 RTP--LENL---EPVLREDIQKI-W----DSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 134 ~t~--~e~l---~~~l~~~l~~i-w----~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
+.+ .+.+ .+.+.+.+... + -.+.+.|+..+.++.+.+. .+|.|
T Consensus 153 l~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~----~~~w~ 205 (426)
T TIGR00483 153 SVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE----NTPWY 205 (426)
T ss_pred ccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc----CCccc
Confidence 863 3322 23333333322 1 1356779999999988654 35655
No 218
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.34 E-value=4.7e-06 Score=86.13 Aligned_cols=151 Identities=9% Similarity=-0.067 Sum_probs=85.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeE----ecCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR----CAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i----~~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.+||.+|||||||+++++..+|.. ..++|-|.-... .......+-++||+|... -+ ...
T Consensus 16 i~vvG~~gvGKTsli~~~~~~~f~~------~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~---------~~~ 79 (219)
T PLN03071 16 LVIVGDGGTGKTTFVKRHLTGEFEK------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FG---------GLR 79 (219)
T ss_pred EEEECcCCCCHHHHHHHHhhCCCCC------ccCCccceeEEEEEEEECCeEEEEEEEECCCchh-hh---------hhh
Confidence 6899999999999999998877752 234444432221 122335788999999641 11 111
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh-cCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD-SVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~-~i~ 156 (772)
..-+..+|++|+.....+.-.... -...++.+.+ . ....|+++|.||.|+.+.+...+.+ +.. +-+. ...
T Consensus 80 ~~~~~~~~~~ilvfD~~~~~s~~~-i~~w~~~i~~----~--~~~~piilvgNK~Dl~~~~v~~~~~-~~~-~~~~~~~~ 150 (219)
T PLN03071 80 DGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCR----V--CENIPIVLCGNKVDVKNRQVKAKQV-TFH-RKKNLQYY 150 (219)
T ss_pred HHHcccccEEEEEEeCCCHHHHHH-HHHHHHHHHH----h--CCCCcEEEEEEchhhhhccCCHHHH-HHH-HhcCCEEE
Confidence 123457787766443322110000 0011112211 1 2468999999999975332222222 111 1121 245
Q ss_pred CCCCccCCCchhhHHHHHhhc
Q 004126 157 KPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~L 177 (772)
..|+..+.+++++|+.....+
T Consensus 151 e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 151 EISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred EcCCCCCCCHHHHHHHHHHHH
Confidence 779999999999998876554
No 219
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.33 E-value=1.6e-06 Score=90.71 Aligned_cols=200 Identities=20% Similarity=0.254 Sum_probs=120.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCC-----CcCCCCCccHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD-----GRERGEDDTAFEKQS 76 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~-----s~er~e~~~~fe~k~ 76 (772)
|++||.||+||||||-.+-+|+=..-+ .-=||--.+-|+..-.+..|=++|.||+- |+.|| . .
T Consensus 65 ValIGfPSVGKStlLs~iT~T~SeaA~----yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRG--R------Q 132 (364)
T KOG1486|consen 65 VALIGFPSVGKSTLLSKITSTHSEAAS----YEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRG--R------Q 132 (364)
T ss_pred EEEecCCCccHHHHHHHhhcchhhhhc----eeeeEEEeecceEEecCceEEEecCcccccccccCCCCC--c------e
Confidence 799999999999999999998766543 56688888888888888999999999985 33444 1 2
Q ss_pred HHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCC------CChhchH-----HHHH
Q 004126 77 ALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR------TPLENLE-----PVLR 145 (772)
Q Consensus 77 alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~------t~~e~l~-----~~l~ 145 (772)
+......||+++..+. .++.......|-+.+-+|-++|-. +++.+.|-..+-+. +|+-... ..|.
T Consensus 133 viavArtaDlilMvLD---atk~e~qr~~le~ELe~vGiRLNk-~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILh 208 (364)
T KOG1486|consen 133 VIAVARTADLILMVLD---ATKSEDQREILEKELEAVGIRLNK-RKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILH 208 (364)
T ss_pred EEEEeecccEEEEEec---CCcchhHHHHHHHHHHHhceeccC-CCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHH
Confidence 3344457999977664 443333333333667666676644 56777777776642 2443333 2222
Q ss_pred HHHHHHhh-cCCCCCCccCCCchhhHHHHHh---hcC-CCccc--hhHHHHHHHHHHhhhcccCCCCCC-CCCCCCcccC
Q 004126 146 EDIQKIWD-SVPKPQAHMETPLSEFFNVEVV---ALS-SFEEK--EELFKEQVASLRQRFYHSVAPGGL-AGDRRGVVPA 217 (772)
Q Consensus 146 ~~l~~iw~-~i~kpsa~~~~~l~dlf~~~~~---~Lp-h~~~~--~~~F~~~v~~Lr~~f~~~~~~~~~-~~~~~~~ip~ 217 (772)
++ +|.+ ++.- -++..++||.|++.- ++| -|.|. ..-=.++|..|-+ .|+.+ -++.-+ .
T Consensus 209 ey--kI~Naevl~---ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlAr------~PnsvViSC~m~-l-- 274 (364)
T KOG1486|consen 209 EY--KIHNAEVLF---REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLAR------QPNSVVISCNMK-L-- 274 (364)
T ss_pred HH--eeccceEEE---ecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHHhc------CCCcEEEEeccc-c--
Confidence 22 2432 2221 246889999998731 222 11222 1112344554433 23322 112111 2
Q ss_pred CchhHhHHHHHHHHH
Q 004126 218 SGFSFSAHEIWKVIK 232 (772)
Q Consensus 218 dg~~~y~~~iW~~I~ 232 (772)
++...++.||+..+
T Consensus 275 -nld~lle~iWe~l~ 288 (364)
T KOG1486|consen 275 -NLDRLLERIWEELN 288 (364)
T ss_pred -CHHHHHHHHHHHhc
Confidence 35667899999875
No 220
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.33 E-value=5.6e-06 Score=86.31 Aligned_cols=112 Identities=23% Similarity=0.290 Sum_probs=67.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCe----------eeecCCCCCCCCcccceeeE------ec--------CCCCcEEEEec
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNF----------REMDAFKGRSQTTKGIWMAR------CA--------GIEPCTLIMDL 57 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkf----------sims~~~~r~QTTrGiw~~i------~~--------~~~~qil~lDt 57 (772)
|+|+|..++|||||+++|++..= ..|+.. ..--.||+-+.. .. ....++.++||
T Consensus 3 vaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~--~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 3 ICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSR--EDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCC--HHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 79999999999999999985321 111110 000112222111 11 12568899999
Q ss_pred CCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 58 EGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 58 eG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
||... | ...+..++..+|++|+.+...+ |. ......+++...+ ...|+++|+||+|+.
T Consensus 81 PG~~~---------f-~~~~~~~l~~aD~~ilVvD~~~-g~-~~~t~~~l~~~~~--------~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVD---------F-SSEVTAALRLCDGALVVVDAVE-GV-CVQTETVLRQALK--------ERVKPVLVINKIDRL 138 (222)
T ss_pred CCccc---------c-HHHHHHHHHhcCeeEEEEECCC-CC-CHHHHHHHHHHHH--------cCCCEEEEEECCCcc
Confidence 99861 2 2356778899999988776532 21 1122233333333 457899999999975
No 221
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.33 E-value=1.1e-06 Score=94.06 Aligned_cols=54 Identities=28% Similarity=0.305 Sum_probs=43.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD 61 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~ 61 (772)
|.++|.||+|||||+|+|.|.+...++ ..+.|||+.-.-.. ...+.++||||+-
T Consensus 121 ~~~vG~~nvGKSslin~l~~~~~~~~~---~~~g~T~~~~~~~~---~~~~~l~DtPG~~ 174 (276)
T TIGR03596 121 AMIVGIPNVGKSTLINRLAGKKVAKVG---NRPGVTKGQQWIKL---SDGLELLDTPGIL 174 (276)
T ss_pred EEEECCCCCCHHHHHHHHhCCCccccC---CCCCeecceEEEEe---CCCEEEEECCCcc
Confidence 689999999999999999999876666 35778998643222 3578999999997
No 222
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.32 E-value=7.8e-06 Score=83.83 Aligned_cols=154 Identities=14% Similarity=0.063 Sum_probs=91.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccce--eeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--MARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw--~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.++|..+||||||++++.+-.|.. .-.+|-|+- ....... ...+-+.||+|-. +. +...
T Consensus 3 vvvlG~~gVGKTSli~r~~~~~f~~------~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe---~~-------~~l~ 66 (202)
T cd04120 3 VIIIGSRGVGKTSLMRRFTDDTFCE------ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE---RF-------NSIT 66 (202)
T ss_pred EEEECcCCCCHHHHHHHHHhCCCCC------cCCCcceeEEEEEEEEECCEEEEEEEEeCCCch---hh-------HHHH
Confidence 6899999999999999999888852 223444322 2222222 3567899999864 21 1222
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHH-HHHHHhh-cC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE-DIQKIWD-SV 155 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~-~l~~iw~-~i 155 (772)
-.-+..+|++|+.....+... ..-++...+. ++-....+.|+++|.||.|+.+...+.....+ ..+.++. .+
T Consensus 67 ~~y~~~ad~iIlVfDvtd~~S-----f~~l~~w~~~-i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~ 140 (202)
T cd04120 67 SAYYRSAKGIILVYDITKKET-----FDDLPKWMKM-IDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRF 140 (202)
T ss_pred HHHhcCCCEEEEEEECcCHHH-----HHHHHHHHHH-HHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEE
Confidence 344678999988654433221 1112221111 11122356899999999998654444322222 2222221 25
Q ss_pred CCCCCccCCCchhhHHHHHhhc
Q 004126 156 PKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~L 177 (772)
...||..+.+++++|+-....+
T Consensus 141 ~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 141 CEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 5789999999999998766443
No 223
>PRK10218 GTP-binding protein; Provisional
Probab=98.29 E-value=6.5e-06 Score=97.26 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=95.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCC--e--------eeecCCCCCCCCcccceeeEe----cCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN--F--------REMDAFKGRSQTTKGIWMARC----AGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk--f--------sims~~~~r~QTTrGiw~~i~----~~~~~qil~lDteG~~s~er~e 67 (772)
|+|+|..++|||||+++|.+.. | .+||. ....-+||+-+... ...+..+.++||||..
T Consensus 8 IaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~--~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~------ 79 (607)
T PRK10218 8 IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDS--NDLEKERGITILAKNTAIKWNDYRINIVDTPGHA------ 79 (607)
T ss_pred EEEECCCCCcHHHHHHHHHHhcCCcccccccceeeecc--ccccccCceEEEEEEEEEecCCEEEEEEECCCcc------
Confidence 7899999999999999999632 2 12221 11234566654322 2356789999999964
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC--ChhchHHHHH
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT--PLENLEPVLR 145 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t--~~e~l~~~l~ 145 (772)
+|. .....++..+|.+|+.+...+ |. .......++...+ ...|.++|+||+|.. ..+...+.+.
T Consensus 80 ---df~-~~v~~~l~~aDg~ILVVDa~~-G~-~~qt~~~l~~a~~--------~gip~IVviNKiD~~~a~~~~vl~ei~ 145 (607)
T PRK10218 80 ---DFG-GEVERVMSMVDSVLLVVDAFD-GP-MPQTRFVTKKAFA--------YGLKPIVVINKVDRPGARPDWVVDQVF 145 (607)
T ss_pred ---hhH-HHHHHHHHhCCEEEEEEeccc-Cc-cHHHHHHHHHHHH--------cCCCEEEEEECcCCCCCchhHHHHHHH
Confidence 121 234557789999988776532 21 1112223333333 467778999999964 2222222333
Q ss_pred HHHHHH-h------hcCCCCCCccCC----------CchhhHHHHHhhcCCCc
Q 004126 146 EDIQKI-W------DSVPKPQAHMET----------PLSEFFNVEVVALSSFE 181 (772)
Q Consensus 146 ~~l~~i-w------~~i~kpsa~~~~----------~l~dlf~~~~~~Lph~~ 181 (772)
+.+..+ . -.|...|+..+. ++..+++.++..+|...
T Consensus 146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 146 DLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred HHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 322111 0 014556777776 57889999999999774
No 224
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.29 E-value=3.7e-06 Score=99.34 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=91.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCC--e-------eeecCCCCCCCCcccceeeE-------e--cCCCCcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN--F-------REMDAFKGRSQTTKGIWMAR-------C--AGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk--f-------sims~~~~r~QTTrGiw~~i-------~--~~~~~qil~lDteG~~s~ 63 (772)
++|+|..++|||||+++|+... + .++|.. ..--+||+-+.. . .+....+.++||||...
T Consensus 10 i~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~--~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d- 86 (600)
T PRK05433 10 FSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSM--DLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD- 86 (600)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCc--hHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH-
Confidence 6899999999999999998621 1 111110 000123332111 0 22346789999999861
Q ss_pred CCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh--hchH
Q 004126 64 ERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL--ENLE 141 (772)
Q Consensus 64 er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~--e~l~ 141 (772)
|. .....+++.+|.+|+.+...+ |. +......+....+ ...|+++|+||+|..+. +...
T Consensus 87 --------F~-~~v~~sl~~aD~aILVVDas~-gv-~~qt~~~~~~~~~--------~~lpiIvViNKiDl~~a~~~~v~ 147 (600)
T PRK05433 87 --------FS-YEVSRSLAACEGALLVVDASQ-GV-EAQTLANVYLALE--------NDLEIIPVLNKIDLPAADPERVK 147 (600)
T ss_pred --------HH-HHHHHHHHHCCEEEEEEECCC-CC-CHHHHHHHHHHHH--------CCCCEEEEEECCCCCcccHHHHH
Confidence 21 123446788999988775532 10 1111111111111 46789999999997432 2222
Q ss_pred HHHHHHHHHHhhcCCCCCCccCCCchhhHHHHHhhcCCCc
Q 004126 142 PVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFE 181 (772)
Q Consensus 142 ~~l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~~~Lph~~ 181 (772)
+.+.+.+..-+.++...|+..+.+++++++.....+|...
T Consensus 148 ~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 148 QEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 2222211100124678899999999999999999998764
No 225
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.28 E-value=2.6e-06 Score=78.16 Aligned_cols=116 Identities=17% Similarity=0.208 Sum_probs=61.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.++||||||+++|.|..+..-+.......+|-+............+.+.|++|-...... .. ..+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~---~~~ 71 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ-------HQ---FFL 71 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT-------SH---HHH
T ss_pred EEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc-------cc---chh
Confidence 68999999999999999999998711110012223333323333333345788999988522211 11 127
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKT 133 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d 133 (772)
..+|++|+.....+.. ...-+..+.+ .+.... ....|+++|.+|.|
T Consensus 72 ~~~d~~ilv~D~s~~~-----s~~~~~~~~~-~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPE-----SLEYLSQLLK-WLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHH-----HHHHHHHHHH-HHHHHHHHSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChH-----HHHHHHHHHH-HHHHHHccCCCCCEEEEEeccC
Confidence 8899998865443321 1111211211 111111 24599999999876
No 226
>PRK12289 GTPase RsgA; Reviewed
Probab=98.27 E-value=1e-06 Score=97.75 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=43.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCC---CCCCC-CcccceeeEecCCCCcEEEEecCCCCCcCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAF---KGRSQ-TTKGIWMARCAGIEPCTLIMDLEGTDGRER 65 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~---~~r~Q-TTrGiw~~i~~~~~~qil~lDteG~~s~er 65 (772)
++|+|++|+|||||+|+|.|..-..+++. .+|++ |||++-+-..+ . ..+++||||+..+..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~--~-g~~liDTPG~~~~~l 239 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP--N-GGLLADTPGFNQPDL 239 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC--C-CcEEEeCCCcccccc
Confidence 57999999999999999998755444432 22333 89998655443 2 238999999975443
No 227
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.25 E-value=1.1e-05 Score=80.93 Aligned_cols=154 Identities=13% Similarity=0.074 Sum_probs=86.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCccccee--eEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM--ARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~--~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.++|..++|||+|++++.+..|.- ....|-|.-. -..... ...+-+.||.|-. + | +...
T Consensus 3 i~vlG~~~vGKTsLi~~~~~~~f~~------~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~---~------~-~~~~ 66 (182)
T cd04128 3 IGLLGDAQIGKTSLMVKYVEGEFDE------DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR---E------F-INML 66 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC------CCCCccceEEEEEEEEECCEEEEEEEEeCCCch---h------H-HHhh
Confidence 6799999999999999999988852 1122333211 111222 3467899999864 1 1 1133
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC---h-h--chHHHHHHHHHHH
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP---L-E--NLEPVLREDIQKI 151 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~---~-e--~l~~~l~~~l~~i 151 (772)
...+..+|++++.....+.. ...-++...+...+ +.+...| ++|.||.|+.. . + .+.+...+..+..
T Consensus 67 ~~~~~~a~~iilv~D~t~~~-----s~~~i~~~~~~~~~-~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~ 139 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKS-----TLNSIKEWYRQARG-FNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAM 139 (182)
T ss_pred HHHCcCCCEEEEEEECcCHH-----HHHHHHHHHHHHHH-hCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHc
Confidence 35678999998765443221 11111111111111 2234456 57899999742 1 1 1111111111122
Q ss_pred hhcCCCCCCccCCCchhhHHHHHhhcC
Q 004126 152 WDSVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 152 w~~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
-..+.+.|+..+.+++++|+.....+.
T Consensus 140 ~~~~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 140 KAPLIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 224667899999999999998765543
No 228
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.25 E-value=8.4e-06 Score=96.26 Aligned_cols=158 Identities=18% Similarity=0.212 Sum_probs=94.1
Q ss_pred EEEeCCCCCChHHHHhHHhCC--Cee--------eecCCCCCCCCcccceeeE----ecCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT--NFR--------EMDAFKGRSQTTKGIWMAR----CAGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt--kfs--------ims~~~~r~QTTrGiw~~i----~~~~~~qil~lDteG~~s~er~e 67 (772)
|+|||..++|||||+++|+.. .|. +||. ..---.||+-+.. ....+..+.++||||-.
T Consensus 4 IaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~--~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~------ 75 (594)
T TIGR01394 4 IAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDS--NDLERERGITILAKNTAIRYNGTKINIVDTPGHA------ 75 (594)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccC--chHHHhCCccEEeeeEEEEECCEEEEEEECCCHH------
Confidence 789999999999999999852 121 1221 0011234553322 12256789999999963
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC--hhchHHHHH
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP--LENLEPVLR 145 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~--~e~l~~~l~ 145 (772)
+|. .....++..+|.+|+.+...+ |- .......++.+.+ .+.|+++|+||+|... .+.+.+.+.
T Consensus 76 ---DF~-~ev~~~l~~aD~alLVVDa~~-G~-~~qT~~~l~~a~~--------~~ip~IVviNKiD~~~a~~~~v~~ei~ 141 (594)
T TIGR01394 76 ---DFG-GEVERVLGMVDGVLLLVDASE-GP-MPQTRFVLKKALE--------LGLKPIVVINKIDRPSARPDEVVDEVF 141 (594)
T ss_pred ---HHH-HHHHHHHHhCCEEEEEEeCCC-CC-cHHHHHHHHHHHH--------CCCCEEEEEECCCCCCcCHHHHHHHHH
Confidence 232 234567889999988776543 31 1122223333333 5678899999999743 222333333
Q ss_pred HHHHHH-hh------cCCCCCCccCC----------CchhhHHHHHhhcCCCc
Q 004126 146 EDIQKI-WD------SVPKPQAHMET----------PLSEFFNVEVVALSSFE 181 (772)
Q Consensus 146 ~~l~~i-w~------~i~kpsa~~~~----------~l~dlf~~~~~~Lph~~ 181 (772)
..+..+ .. .+...|+..+. ++..+|+.++..+|...
T Consensus 142 ~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 142 DLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred HHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 322211 11 13445666664 68899999999998764
No 229
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.25 E-value=2.3e-06 Score=85.29 Aligned_cols=147 Identities=22% Similarity=0.218 Sum_probs=94.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|+++||||||||+|.+..+.. .+.|.|.-+...+..+..+.+.|++|-.+-..- -..| +
T Consensus 17 ililGl~~sGKTtll~~l~~~~~~~-------~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~--w~~y--------~ 79 (175)
T PF00025_consen 17 ILILGLDGSGKTTLLNRLKNGEISE-------TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPL--WKSY--------F 79 (175)
T ss_dssp EEEEESTTSSHHHHHHHHHSSSEEE-------EEEESSEEEEEEEETTEEEEEEEESSSGGGGGG--GGGG--------H
T ss_pred EEEECCCccchHHHHHHhhhccccc-------cCcccccccceeeeCcEEEEEEecccccccccc--ceee--------c
Confidence 6799999999999999999877654 445777777766667889999999996522111 0112 3
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCC---ChhchHHHHH-HHHH-HH-h
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRT---PLENLEPVLR-EDIQ-KI-W 152 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t---~~e~l~~~l~-~~l~-~i-w 152 (772)
..+|.+|+.+...+..+...+ ...|.. +... ...|++++.||.|.. +.+.+...+. ..+. .. |
T Consensus 80 ~~~~~iIfVvDssd~~~l~e~-~~~L~~-------ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~ 151 (175)
T PF00025_consen 80 QNADGIIFVVDSSDPERLQEA-KEELKE-------LLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPW 151 (175)
T ss_dssp TTESEEEEEEETTGGGGHHHH-HHHHHH-------HHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCE
T ss_pred cccceeEEEEecccceeeccc-ccchhh-------hcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCce
Confidence 578999888866554332221 222222 2222 478999999999864 3344443321 1221 11 3
Q ss_pred hcCCCCCCccCCCchhhHHHHH
Q 004126 153 DSVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 153 ~~i~kpsa~~~~~l~dlf~~~~ 174 (772)
. +.+.++..+.++.+.|+-..
T Consensus 152 ~-v~~~sa~~g~Gv~e~l~WL~ 172 (175)
T PF00025_consen 152 S-VFSCSAKTGEGVDEGLEWLI 172 (175)
T ss_dssp E-EEEEBTTTTBTHHHHHHHHH
T ss_pred E-EEeeeccCCcCHHHHHHHHH
Confidence 2 55678888999888887544
No 230
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.25 E-value=6.5e-06 Score=83.46 Aligned_cols=153 Identities=9% Similarity=-0.055 Sum_probs=89.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceee--Ee--cCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA--RC--AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~--i~--~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|+|-+++||||||+++.+-+|.. .-.+|-|.-.- .. ......+-+.||+|-. + |. .+.
T Consensus 9 ivviG~~~vGKTsll~~~~~~~~~~------~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~---~------~~-~l~ 72 (189)
T cd04121 9 FLLVGDSDVGKGEILASLQDGSTES------PYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG---R------FC-TIF 72 (189)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC------CCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH---H------HH-HHH
Confidence 6799999999999999999887752 11223222111 11 1123567789999874 1 11 122
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~ 156 (772)
...+..+|++|+.....+...... +-+.+-++ .+ .. ++.|+++|-||.|+.....+. +...+..+.......
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~----~~~w~~~i-~~-~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~ 145 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDG----IDRWIKEI-DE-HA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFF 145 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHH----HHHHHHHH-HH-hC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEE
Confidence 334579999988654433221111 11111121 11 11 478999999999975322222 223333333322467
Q ss_pred CCCCccCCCchhhHHHHHhhc
Q 004126 157 KPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~L 177 (772)
..|+..+.+++++|+-....+
T Consensus 146 e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 146 EVSPLCNFNITESFTELARIV 166 (189)
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 889999999999998776544
No 231
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.25 E-value=1.1e-06 Score=92.80 Aligned_cols=60 Identities=22% Similarity=0.101 Sum_probs=42.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeee---cCCCCCC-CCcccceeeEecCCCCcEEEEecCCCCCcCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREM---DAFKGRS-QTTKGIWMARCAGIEPCTLIMDLEGTDGRER 65 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsim---s~~~~r~-QTTrGiw~~i~~~~~~qil~lDteG~~s~er 65 (772)
+.++|.+|+|||||+|+|.|..-..+ +...+|+ .||++.-+-... .-.++||||+...+-
T Consensus 123 ~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~----~~~liDtPG~~~~~l 186 (245)
T TIGR00157 123 SVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH----GGLIADTPGFNEFGL 186 (245)
T ss_pred EEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC----CcEEEeCCCccccCC
Confidence 67999999999999999999643332 2212332 388887654442 238999999985553
No 232
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.23 E-value=1.7e-05 Score=88.79 Aligned_cols=123 Identities=14% Similarity=0.123 Sum_probs=78.8
Q ss_pred EEEeCCCCCChHHHHhHHhCC----Cee-----------eecCCCCCC-CCcccce-----eeEecC--CCCcEEEEecC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT----NFR-----------EMDAFKGRS-QTTKGIW-----MARCAG--IEPCTLIMDLE 58 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt----kfs-----------ims~~~~r~-QTTrGiw-----~~i~~~--~~~qil~lDte 58 (772)
++++|+-|+||||++|++.|. .++ +.+...||- -||-=.+ |-+... ....+.++||.
T Consensus 20 IGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcv 99 (492)
T TIGR02836 20 IGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCV 99 (492)
T ss_pred EEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECC
Confidence 689999999999999999999 888 776543433 3444444 233332 34799999999
Q ss_pred CCCCcCCCCCccHHHHHH----------------------HHHHhh-cccEEEEeecccccc---c--cccCCHHHHHHH
Q 004126 59 GTDGRERGEDDTAFEKQS----------------------ALFALA-VSDIVLINMWCHDIG---R--EQAANKPLLKTV 110 (772)
Q Consensus 59 G~~s~er~e~~~~fe~k~----------------------alfALa-~sDvliiNl~~~dig---~--~~~~n~~lLktv 110 (772)
|++-.. .+ +..+..- +...+. .||+-|+..-.-.+| | |..+...++..+
T Consensus 100 G~~v~G--al-G~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 100 GYTVKG--AL-GYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred CcccCC--Cc-cceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 998322 11 1111111 456677 799988766222222 2 223334445555
Q ss_pred HHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 111 FQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 111 ~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
.+ .++|+++|+|+.+..
T Consensus 177 k~--------~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 177 KE--------LNKPFIILLNSTHPY 193 (492)
T ss_pred Hh--------cCCCEEEEEECcCCC
Confidence 55 789999999999843
No 233
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.23 E-value=7.3e-06 Score=92.78 Aligned_cols=160 Identities=12% Similarity=0.028 Sum_probs=92.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCccccee---eEe-----------cC----C--------CCcEEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM---ARC-----------AG----I--------EPCTLIM 55 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~---~i~-----------~~----~--------~~qil~l 55 (772)
|+|+|.-++|||||+.+|.|.-..-.... -....|-..=. .+. .. . ..++.|+
T Consensus 12 i~v~Gh~d~GKSTL~~~L~~~~~d~~~~E-~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~li 90 (411)
T PRK04000 12 IGMVGHVDHGKTTLVQALTGVWTDRHSEE-LKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFV 90 (411)
T ss_pred EEEEccCCCCHHHHHHHhhCeecccCHhH-HhcCcEEEecccccccccccccCccccccccccccccccccccccEEEEE
Confidence 78999999999999999977532211110 01122322100 000 00 0 2578999
Q ss_pred ecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 56 DLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 56 DteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
||||- .+|. ...+.+++.+|++++.+...+.. ........+..+.. . ..+++++|+||+|+.
T Consensus 91 DtPG~---------~~f~-~~~~~~~~~~D~~llVVDa~~~~-~~~~t~~~l~~l~~-----~--~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 91 DAPGH---------ETLM-ATMLSGAALMDGAILVIAANEPC-PQPQTKEHLMALDI-----I--GIKNIVIVQNKIDLV 152 (411)
T ss_pred ECCCH---------HHHH-HHHHHHHhhCCEEEEEEECCCCC-CChhHHHHHHHHHH-----c--CCCcEEEEEEeeccc
Confidence 99993 2343 35667778899998877654311 01111222222211 1 235689999999987
Q ss_pred ChhchHH---HHHHHHHHH---hhcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 136 PLENLEP---VLREDIQKI---WDSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 136 ~~e~l~~---~l~~~l~~i---w~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
+.+.... .+.+.+... +..+.+.|+..+.+++++++.....+|..
T Consensus 153 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 153 SKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred cchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 6544332 222222211 12356789999999999999988877753
No 234
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.23 E-value=6.8e-06 Score=93.95 Aligned_cols=149 Identities=13% Similarity=0.167 Sum_probs=87.4
Q ss_pred EEEeCCCCCChHHHHhHHhCC--Cee-----------------------eecCC--CCCCCCcccceeeEecCCCCcEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT--NFR-----------------------EMDAF--KGRSQTTKGIWMARCAGIEPCTLI 54 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt--kfs-----------------------ims~~--~~r~QTTrGiw~~i~~~~~~qil~ 54 (772)
|+++|..++|||||+.+|+.. .+. +||.. ......|-..-.......+..+.|
T Consensus 10 v~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~l 89 (446)
T PTZ00141 10 LVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTI 89 (446)
T ss_pred EEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEE
Confidence 789999999999999999751 010 22211 011123333322223345678999
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeecccccccc------ccCCHHHHHHHHHHHHhhcCCCCccEEEE
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGRE------QAANKPLLKTVFQVMMRLFSPRKTTLMFV 128 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~------~~~n~~lLktv~evnl~lf~~~k~~llfV 128 (772)
+|||| | .+|. +....++..+|+.|+.+...+ |-. .+.....+..+.. -..+.++++
T Consensus 90 IDtPG-h--------~~f~-~~~~~g~~~aD~ailVVda~~-G~~e~~~~~~~qT~eh~~~~~~-------~gi~~iiv~ 151 (446)
T PTZ00141 90 IDAPG-H--------RDFI-KNMITGTSQADVAILVVASTA-GEFEAGISKDGQTREHALLAFT-------LGVKQMIVC 151 (446)
T ss_pred EECCC-h--------HHHH-HHHHHhhhhcCEEEEEEEcCC-CceecccCCCccHHHHHHHHHH-------cCCCeEEEE
Confidence 99999 3 2453 355777899999998776532 211 1222233333333 023558899
Q ss_pred EeCCCCCC-------hhchHHHHHHHHHHH-hh----cCCCCCCccCCCchh
Q 004126 129 IRDKTRTP-------LENLEPVLREDIQKI-WD----SVPKPQAHMETPLSE 168 (772)
Q Consensus 129 Ird~d~t~-------~e~l~~~l~~~l~~i-w~----~i~kpsa~~~~~l~d 168 (772)
|||+|... .+.+.+.+.+.+..+ |. .+++.|++.+.++.+
T Consensus 152 vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 152 INKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99999432 233344555555443 42 256889999988764
No 235
>PRK12288 GTPase RsgA; Reviewed
Probab=98.22 E-value=1.6e-06 Score=96.12 Aligned_cols=60 Identities=20% Similarity=0.106 Sum_probs=43.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCC---CCCCC-CcccceeeEecCCCCcEEEEecCCCCCcC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAF---KGRSQ-TTKGIWMARCAGIEPCTLIMDLEGTDGRE 64 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~---~~r~Q-TTrGiw~~i~~~~~~qil~lDteG~~s~e 64 (772)
++++|.+|+|||||+|+|.|..-..+++. .+|++ ||++.-+-..+. ...++||||+.+-.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~---~~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH---GGDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC---CCEEEECCCCCccc
Confidence 68999999999999999999755444333 23333 787776655532 34689999997444
No 236
>PRK13796 GTPase YqeH; Provisional
Probab=98.19 E-value=1.9e-06 Score=96.08 Aligned_cols=54 Identities=20% Similarity=0.124 Sum_probs=41.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCC-----eeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN-----FREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD 61 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk-----fsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~ 61 (772)
|.+||.+|+|||||+|+|++.. ...+| ..|-||++...-.. +....++||||+.
T Consensus 163 v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s---~~pGTT~~~~~~~l---~~~~~l~DTPGi~ 221 (365)
T PRK13796 163 VYVVGVTNVGKSTLINRIIKEITGEKDVITTS---RFPGTTLDKIEIPL---DDGSFLYDTPGII 221 (365)
T ss_pred EEEEcCCCCcHHHHHHHHHhhccCccceEEec---CCCCccceeEEEEc---CCCcEEEECCCcc
Confidence 6799999999999999999643 22234 46779999775433 2346899999997
No 237
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.17 E-value=1.5e-05 Score=78.14 Aligned_cols=147 Identities=13% Similarity=0.117 Sum_probs=84.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|..++|||||++++.+..|.-. ..||-+.........+ ..+.+.||.|... ..+
T Consensus 3 i~vvG~~gvGKTsli~~~~~~~f~~~------~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-------~~~------- 62 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLTGSYVQL------ESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-------AQF------- 62 (158)
T ss_pred EEEECCCCCcHHHHHHHHHhCCCCCC------CCCCccceEEEEEECCEEEEEEEEECCCCCc-------hhH-------
Confidence 68999999999999999888777421 1234443322222222 4578899998851 111
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC--ChhchHHHHHHHHH-HHh-hcC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT--PLENLEPVLREDIQ-KIW-DSV 155 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t--~~e~l~~~l~~~l~-~iw-~~i 155 (772)
...+|++|+.....+...++ -++...+...+.......|+++|.||.|+. +...+.....+.+. ..+ -..
T Consensus 63 -~~~~~~~ilv~d~~~~~sf~-----~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~ 136 (158)
T cd04103 63 -ASWVDAVIFVFSLENEASFQ-----TVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSY 136 (158)
T ss_pred -HhcCCEEEEEEECCCHHHHH-----HHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcE
Confidence 24688887755443322111 112222211122222467999999998752 22233322222222 222 136
Q ss_pred CCCCCccCCCchhhHHHHH
Q 004126 156 PKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~ 174 (772)
.+.|+..+.+++++|+...
T Consensus 137 ~e~SAk~~~~i~~~f~~~~ 155 (158)
T cd04103 137 YETCATYGLNVERVFQEAA 155 (158)
T ss_pred EEEecCCCCCHHHHHHHHH
Confidence 6789999999999998654
No 238
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.14 E-value=1.5e-06 Score=86.34 Aligned_cols=61 Identities=21% Similarity=0.169 Sum_probs=36.2
Q ss_pred EEEeCCCCCChHHHHhHHhCC-Ceee--ecCCCCCC-CCcccceeeEecCCCCcEEEEecCCCCCcCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT-NFRE--MDAFKGRS-QTTKGIWMARCAGIEPCTLIMDLEGTDGRER 65 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt-kfsi--ms~~~~r~-QTTrGiw~~i~~~~~~qil~lDteG~~s~er 65 (772)
+.++|..++|||||+|.|+|. .+.+ ++...+|+ .||+..-+-.. +....++||||+.+..-
T Consensus 38 ~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 38 SVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSFGL 102 (161)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE---TTSEEEECSHHHHT--G
T ss_pred EEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec---CCCcEEEECCCCCcccc
Confidence 679999999999999999997 3332 33333343 47777666555 35789999999975543
No 239
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.14 E-value=1.7e-05 Score=86.07 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=83.8
Q ss_pred CEEEeCCCCCChHHHHhHHhC------CCeeeecCCCCCCCCcccce--------------------------eeEe---
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG------TNFREMDAFKGRSQTTKGIW--------------------------MARC--- 45 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG------tkfsims~~~~r~QTTrGiw--------------------------~~i~--- 45 (772)
+|.|+|+||+|||||++.|.+ .++.+++.-...+-|++.++ .+..
T Consensus 36 ~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (300)
T TIGR00750 36 RVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGLSQAT 115 (300)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccchhHHH
Confidence 478999999999999999874 45555442211221211111 0000
Q ss_pred -------cCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhc
Q 004126 46 -------AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF 118 (772)
Q Consensus 46 -------~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf 118 (772)
......+||+||+|.. + ... ..+..+|.+++.... . .... |+.+.+ .+
T Consensus 116 ~~~~~~l~~~g~D~viidT~G~~--~-----~e~------~i~~~aD~i~vv~~~-~------~~~e-l~~~~~---~l- 170 (300)
T TIGR00750 116 RELILLLDAAGYDVIIVETVGVG--Q-----SEV------DIANMADTFVVVTIP-G------TGDD-LQGIKA---GL- 170 (300)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCc--h-----hhh------HHHHhhceEEEEecC-C------ccHH-HHHHHH---HH-
Confidence 0135789999999975 1 111 135567777654321 1 1111 111111 01
Q ss_pred CCCCccEEEEEeCCCCCChhchH---HHHHHHHHHH------hh-cCCCCCCccCCCchhhHHHHHhhcC
Q 004126 119 SPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKI------WD-SVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 119 ~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~i------w~-~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
...+.++|+||+|..+.+... ..+...+..+ |. .+.+.|+..+.+++++++.....+.
T Consensus 171 --~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 171 --MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred --hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 235678999999987554321 1122222222 43 3677899999999999887765533
No 240
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.14 E-value=2.7e-06 Score=94.61 Aligned_cols=56 Identities=21% Similarity=0.158 Sum_probs=43.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCC-----eeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN-----FREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk-----fsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~ 63 (772)
|.+||.+|+|||||+|+|++.. ...+| +.|-||++...... +..+.++||||+...
T Consensus 157 v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s---~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 157 VYVVGVTNVGKSSLINKLLKQNNGDKDVITTS---PFPGTTLDLIEIPL---DDGHSLYDTPGIINS 217 (360)
T ss_pred EEEECCCCCCHHHHHHHHHhhccCCcceeeec---CCCCeEeeEEEEEe---CCCCEEEECCCCCCh
Confidence 6899999999999999999953 23334 57889999876544 345789999999743
No 241
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.13 E-value=2e-05 Score=90.46 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=98.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEe-----------------------------cC-----
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC-----------------------------AG----- 47 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~-----------------------------~~----- 47 (772)
|+++|.-..|||||+-+|-|..-.-..+...|+-|-. +|.. ..
T Consensus 37 ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~---lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 37 IGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIK---LGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred EEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchh---ccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 6889999999999999999964433222212222211 1110 00
Q ss_pred -CCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEE
Q 004126 48 -IEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLM 126 (772)
Q Consensus 48 -~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~ll 126 (772)
...++.|+||||- ..| .+.+..+++.+|++++.+...+-+- .......+..+. +. .-++++
T Consensus 114 ~~~~~i~~IDtPGH---------~~f-i~~m~~g~~~~D~alLVVda~~g~~-~~qT~ehl~i~~-----~l--gi~~iI 175 (460)
T PTZ00327 114 TLKRHVSFVDCPGH---------DIL-MATMLNGAAVMDAALLLIAANESCP-QPQTSEHLAAVE-----IM--KLKHII 175 (460)
T ss_pred cccceEeeeeCCCH---------HHH-HHHHHHHHhhCCEEEEEEECCCCcc-chhhHHHHHHHH-----Hc--CCCcEE
Confidence 0247899999992 234 4567888999999988776643210 111111222111 11 235789
Q ss_pred EEEeCCCCCChhchHHHHHH---HHHHH---hhcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 127 FVIRDKTRTPLENLEPVLRE---DIQKI---WDSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 127 fVIrd~d~t~~e~l~~~l~~---~l~~i---w~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
+||||+|+.+.+.+++.+.+ .+... +..+.+.|+..+.+++.|++.....+|..
T Consensus 176 VvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 176 ILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred EEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 99999998876655543322 22211 34578899999999999999998888754
No 242
>PRK13351 elongation factor G; Reviewed
Probab=98.12 E-value=1.1e-05 Score=96.77 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=65.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCC--eeeecCCC-CCCCC-------cccceee----EecCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN--FREMDAFK-GRSQT-------TKGIWMA----RCAGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk--fsims~~~-~r~QT-------TrGiw~~----i~~~~~~qil~lDteG~~s~er~e 67 (772)
|+|+|..++|||||+|+|+... ..-+.... +...+ .||+-+. .......++.++||||..
T Consensus 11 i~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~------ 84 (687)
T PRK13351 11 IGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI------ 84 (687)
T ss_pred EEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH------
Confidence 7899999999999999998521 11111000 00000 1222211 122246789999999975
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
+|. ..+..++..+|++|+.+...+-- ......++..+.+ ...|+++|+||.|..
T Consensus 85 ---df~-~~~~~~l~~aD~~ilVvd~~~~~--~~~~~~~~~~~~~--------~~~p~iiviNK~D~~ 138 (687)
T PRK13351 85 ---DFT-GEVERSLRVLDGAVVVFDAVTGV--QPQTETVWRQADR--------YGIPRLIFINKMDRV 138 (687)
T ss_pred ---HHH-HHHHHHHHhCCEEEEEEeCCCCC--CHHHHHHHHHHHh--------cCCCEEEEEECCCCC
Confidence 122 24566788999998877653311 1111222222222 567889999999865
No 243
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.09 E-value=4.1e-05 Score=78.30 Aligned_cols=151 Identities=11% Similarity=-0.047 Sum_probs=79.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec----CCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA----GIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~----~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|+|+|++|||||||+|+++...|. +...+|-|.-..... .....+-+.||+|-... . ..+
T Consensus 12 v~liG~~g~GKTtLi~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~--~-----~~~--- 75 (215)
T PTZ00132 12 LILVGDGGVGKTTFVKRHLTGEFE------KKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF--G-----GLR--- 75 (215)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCC------CCCCCccceEEEEEEEEECCeEEEEEEEECCCchhh--h-----hhh---
Confidence 689999999999999876554453 234566665443322 23356778999985311 1 111
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 157 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~k 157 (772)
...+..+|++|+.....+- . ...-++....-..+. ....|+++|.||+|..+.+...+.+ +.....--...+
T Consensus 76 ~~~~~~~~~~i~v~d~~~~---~--s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~e 147 (215)
T PTZ00132 76 DGYYIKGQCAIIMFDVTSR---I--TYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQI-TFHRKKNLQYYD 147 (215)
T ss_pred HHHhccCCEEEEEEECcCH---H--HHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHH-HHHHHcCCEEEE
Confidence 1224467888765543211 1 111111111101111 1357888999999875332222211 111111112446
Q ss_pred CCCccCCCchhhHHHHHhh
Q 004126 158 PQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~ 176 (772)
.|+..+.++++.|......
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~ 166 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARR 166 (215)
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 6777888877777554433
No 244
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.08 E-value=3e-05 Score=90.42 Aligned_cols=126 Identities=18% Similarity=0.266 Sum_probs=73.2
Q ss_pred EEEeCCCCCChHHHHhHHh--CCCeeeecCCCCCC--C----------CcccceeeE----ecCCCCcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLF--GTNFREMDAFKGRS--Q----------TTKGIWMAR----CAGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf--Gtkfsims~~~~r~--Q----------TTrGiw~~i----~~~~~~qil~lDteG~~s~ 63 (772)
++|||.+++|||||+++|+ +.-+..+....+++ + -+||+-+.. ....+.++.++||||..
T Consensus 14 iaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~-- 91 (527)
T TIGR00503 14 FAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHE-- 91 (527)
T ss_pred EEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChh--
Confidence 6899999999999999985 32232222111111 1 123443321 12246889999999973
Q ss_pred CCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC--ChhchH
Q 004126 64 ERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT--PLENLE 141 (772)
Q Consensus 64 er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t--~~e~l~ 141 (772)
+|. ..+..++..+|++|+.+...+ |. . ...+.++++. .....|+++++||+|.. +.+.+.
T Consensus 92 -------df~-~~~~~~l~~aD~aIlVvDa~~-gv-~----~~t~~l~~~~----~~~~~PiivviNKiD~~~~~~~~ll 153 (527)
T TIGR00503 92 -------DFS-EDTYRTLTAVDNCLMVIDAAK-GV-E----TRTRKLMEVT----RLRDTPIFTFMNKLDRDIRDPLELL 153 (527)
T ss_pred -------hHH-HHHHHHHHhCCEEEEEEECCC-CC-C----HHHHHHHHHH----HhcCCCEEEEEECccccCCCHHHHH
Confidence 122 235667889999988776533 21 1 1122233211 11568899999999974 344444
Q ss_pred HHHHHH
Q 004126 142 PVLRED 147 (772)
Q Consensus 142 ~~l~~~ 147 (772)
+.+.+.
T Consensus 154 ~~i~~~ 159 (527)
T TIGR00503 154 DEVENE 159 (527)
T ss_pred HHHHHH
Confidence 444443
No 245
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.06 E-value=3.2e-05 Score=77.94 Aligned_cols=154 Identities=13% Similarity=0.057 Sum_probs=86.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceee-E--ecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA-R--CAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~-i--~~~~~~qil~lDteG~~s~er~e~~~~fe~k~al 78 (772)
|.++|..++|||+|++++.+-.|.- ....|-|.-.. . .......+-+.||+|-. +. . .+.-
T Consensus 6 i~~vG~~~vGKTsli~~~~~~~f~~------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e---~~------~-~l~~ 69 (191)
T cd01875 6 CVVVGDGAVGKTCLLICYTTNAFPK------EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQE---EY------D-RLRT 69 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCc------CCCCceEeeeEEEEEECCEEEEEEEEECCCch---hh------h-hhhh
Confidence 6799999999999999999888842 11223232211 1 11223467889999874 21 1 1122
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHH--HHHHHHHhhcCCCCccEEEEEeCCCCCChhc------------hH-HH
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLK--TVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN------------LE-PV 143 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLk--tv~evnl~lf~~~k~~llfVIrd~d~t~~e~------------l~-~~ 143 (772)
.-+..+|++|+.....+... ..-++ ...++.- .. ...|+++|.||.|+..... +. +.
T Consensus 70 ~~~~~a~~~ilvydit~~~S-----f~~~~~~w~~~i~~--~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~ 141 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSS-----YENVRHKWHPEVCH--HC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQ 141 (191)
T ss_pred hhccCCCEEEEEEECCCHHH-----HHHHHHHHHHHHHh--hC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHH
Confidence 23568998877543333221 11121 1111111 11 4689999999999753211 11 11
Q ss_pred HHHHHHHHhh-cCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 144 LREDIQKIWD-SVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 144 l~~~l~~iw~-~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
..+.....+. ...+.||..+.++.++|+.....+-+
T Consensus 142 ~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 142 GGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 1111112221 35678899999999999887765543
No 246
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.05 E-value=6.9e-05 Score=75.42 Aligned_cols=153 Identities=17% Similarity=0.100 Sum_probs=85.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|-+++|||+|++++.+..|.- ....|.-..+.-... .....+-+.||+|-. +. ..+...
T Consensus 8 ivvvGd~~vGKTsli~~~~~~~f~~-----~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e---~~-------~~~~~~ 72 (182)
T cd04172 8 IVVVGDSQCGKTALLHVFAKDCFPE-----NYVPTVFENYTASFEIDTQRIELSLWDTSGSP---YY-------DNVRPL 72 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC-----ccCCceeeeeEEEEEECCEEEEEEEEECCCch---hh-------Hhhhhh
Confidence 6899999999999999999988852 122233212111111 123467899999863 21 112234
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh-----------h-chH-HHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL-----------E-NLE-PVLRE 146 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~-----------e-~l~-~~l~~ 146 (772)
.+..+|++|+... +.... +=..+++...+. ++-+. ...|+++|.||.|+... + .+. +...+
T Consensus 73 ~~~~ad~~ilvyD---it~~~-Sf~~~~~~w~~~-i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (182)
T cd04172 73 SYPDSDAVLICFD---ISRPE-TLDSVLKKWKGE-IQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred hcCCCCEEEEEEE---CCCHH-HHHHHHHHHHHH-HHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence 5678999877543 33211 111111111111 11112 46899999999997421 0 111 12222
Q ss_pred HHHHHhh-cCCCCCCccCCC-chhhHHHHHh
Q 004126 147 DIQKIWD-SVPKPQAHMETP-LSEFFNVEVV 175 (772)
Q Consensus 147 ~l~~iw~-~i~kpsa~~~~~-l~dlf~~~~~ 175 (772)
.-+.+.. .....|+..+.+ +.++|+....
T Consensus 147 ~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 147 MAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 2223332 355779999998 9999987654
No 247
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.04 E-value=1.9e-05 Score=80.89 Aligned_cols=149 Identities=9% Similarity=-0.068 Sum_probs=87.0
Q ss_pred eCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEe----cCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 5 FFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC----AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 5 vG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~----~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
||.++||||||++++.+-.|. ...++|-|.-.... ......+-+.||+|-. +. +.+....
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~------~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e---~~-------~~l~~~~ 64 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE------KKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE---KF-------GGLRDGY 64 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC------CCCCCceeEEEEEEEEEECCEEEEEEEEECCCch---hh-------hhhhHHH
Confidence 699999999999999977774 23345554322111 1234578899999874 11 1223345
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcCCCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVPKPQ 159 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i~kps 159 (772)
+..+|++|+.....+-..+... ...++.+.+ . ....|+++|.||.|+...+...+.+ +..... | .....|
T Consensus 65 ~~~ad~~ilV~D~t~~~S~~~i-~~w~~~i~~----~--~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~-~~~e~S 135 (200)
T smart00176 65 YIQGQCAIIMFDVTARVTYKNV-PNWHRDLVR----V--CENIPIVLCGNKVDVKDRKVKAKSI-TFHRKKNL-QYYDIS 135 (200)
T ss_pred hcCCCEEEEEEECCChHHHHHH-HHHHHHHHH----h--CCCCCEEEEEECcccccccCCHHHH-HHHHHcCC-EEEEEe
Confidence 6788998776544332111100 011111211 1 1478999999999975322212222 111111 3 356789
Q ss_pred CccCCCchhhHHHHHhhcC
Q 004126 160 AHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~Lp 178 (772)
+..+.++.++|+.....+.
T Consensus 136 Ak~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 136 AKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998876553
No 248
>PRK12740 elongation factor G; Reviewed
Probab=98.02 E-value=4.8e-05 Score=91.09 Aligned_cols=111 Identities=13% Similarity=0.059 Sum_probs=64.7
Q ss_pred eCCCCCChHHHHhHHhCCCeeeecC--CCC------------CCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCcc
Q 004126 5 FFVIMTGKSTLLNHLFGTNFREMDA--FKG------------RSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDT 70 (772)
Q Consensus 5 vG~~ssGKSTLLN~LfGtkfsims~--~~~------------r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~ 70 (772)
||.+++|||||.|+|+...=.+... ..+ ..+.|-+.-.......+.++.++||||..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~--------- 71 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHV--------- 71 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcH---------
Confidence 6999999999999996532111110 000 11222222223333356799999999975
Q ss_pred HHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 71 AFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 71 ~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
+| ...+..++..+|++|+.+...+ |. ......++..+.. ...|+++|+||+|..
T Consensus 72 ~~-~~~~~~~l~~aD~vllvvd~~~-~~-~~~~~~~~~~~~~--------~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 72 DF-TGEVERALRVLDGAVVVVCAVG-GV-EPQTETVWRQAEK--------YGVPRIIFVNKMDRA 125 (668)
T ss_pred HH-HHHHHHHHHHhCeEEEEEeCCC-Cc-CHHHHHHHHHHHH--------cCCCEEEEEECCCCC
Confidence 12 1234567889999988776533 21 1111222222222 467888999999865
No 249
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.99 E-value=4.5e-05 Score=76.30 Aligned_cols=152 Identities=14% Similarity=0.055 Sum_probs=82.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEe--cCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC--AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~--~~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|.+++|||+|++++.+-.|.. ....|.-..+.-.. ....-.+-+.||+|-. +.. .....
T Consensus 4 iv~vG~~~vGKTsli~~~~~~~f~~-----~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~---~~~-------~~~~~ 68 (178)
T cd04131 4 IVVVGDVQCGKTALLQVFAKDCYPE-----TYVPTVFENYTASFEIDEQRIELSLWDTSGSP---YYD-------NVRPL 68 (178)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCC-----CcCCceEEEEEEEEEECCEEEEEEEEECCCch---hhh-------hcchh
Confidence 6899999999999999999988852 11223222221111 1223467899999853 210 11223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHH-HHHHHHHhhcCCCCccEEEEEeCCCCCCh------------hchH-HHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLK-TVFQVMMRLFSPRKTTLMFVIRDKTRTPL------------ENLE-PVLR 145 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLk-tv~evnl~lf~~~k~~llfVIrd~d~t~~------------e~l~-~~l~ 145 (772)
.+..+|++|+.....+..-+ ..+++ .+.++ +-+. ...|+++|-||.|+.+. ..+. +...
T Consensus 69 ~~~~a~~~ilvfdit~~~Sf----~~~~~~w~~~i--~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 69 CYPDSDAVLICFDISRPETL----DSVLKKWRGEI--QEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred hcCCCCEEEEEEECCChhhH----HHHHHHHHHHH--HHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHH
Confidence 46789998775543222111 11111 11111 1112 46899999999997431 0111 1111
Q ss_pred HHHHHHhh-cCCCCCCccCCC-chhhHHHHHh
Q 004126 146 EDIQKIWD-SVPKPQAHMETP-LSEFFNVEVV 175 (772)
Q Consensus 146 ~~l~~iw~-~i~kpsa~~~~~-l~dlf~~~~~ 175 (772)
+.-+.+-. .....|+..+.+ +.++|+....
T Consensus 142 ~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 142 AIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred HHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 11111111 235678999985 9999987665
No 250
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.98 E-value=2.9e-05 Score=93.81 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=69.5
Q ss_pred EEEeCCCCCChHHHHhHHhCC----------CeeeecCC--CCCCCCcccc----eeeEecCCCCcEEEEecCCCCCcCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT----------NFREMDAF--KGRSQTTKGI----WMARCAGIEPCTLIMDLEGTDGRER 65 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt----------kfsims~~--~~r~QTTrGi----w~~i~~~~~~qil~lDteG~~s~er 65 (772)
|+|+|..++|||||.++|+.. +-..++.. ....++|.+. +.......+.++.++||||.+.
T Consensus 22 I~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~--- 98 (720)
T TIGR00490 22 IGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD--- 98 (720)
T ss_pred EEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc---
Confidence 789999999999999999741 00112210 0012233322 1112334568999999999972
Q ss_pred CCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 66 GEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 66 ~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
|. ..+..++..+|++|+.+...+ |. ......+++...+ .+.|.++|+||+|..
T Consensus 99 ------f~-~~~~~al~~aD~~llVvda~~-g~-~~~t~~~~~~~~~--------~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 99 ------FG-GDVTRAMRAVDGAIVVVCAVE-GV-MPQTETVLRQALK--------ENVKPVLFINKVDRL 151 (720)
T ss_pred ------cH-HHHHHHHHhcCEEEEEEecCC-CC-CccHHHHHHHHHH--------cCCCEEEEEEChhcc
Confidence 11 345678899999998886532 21 1222334444333 456778999999864
No 251
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.97 E-value=4.3e-05 Score=89.13 Aligned_cols=114 Identities=21% Similarity=0.286 Sum_probs=67.3
Q ss_pred EEEeCCCCCChHHHHhHHhC--CCeeeecCCCC--CCCC----------cccceeeEe----cCCCCcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFG--TNFREMDAFKG--RSQT----------TKGIWMARC----AGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG--tkfsims~~~~--r~QT----------TrGiw~~i~----~~~~~qil~lDteG~~s~ 63 (772)
|+|||.+++|||||.++|+. ..++......+ .+++ .||+-+... ...+..+.++||||..
T Consensus 13 i~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~-- 90 (526)
T PRK00741 13 FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE-- 90 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCch--
Confidence 78999999999999999973 22222221111 1122 234332221 1245789999999964
Q ss_pred CCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 64 ERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 64 er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
+|.. .+..++..+|++|+.+...+ |. . .-.+.+++... ..+.|+++++||+|..
T Consensus 91 -------df~~-~~~~~l~~aD~aIlVvDa~~-gv-~----~~t~~l~~~~~----~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 91 -------DFSE-DTYRTLTAVDSALMVIDAAK-GV-E----PQTRKLMEVCR----LRDTPIFTFINKLDRD 144 (526)
T ss_pred -------hhHH-HHHHHHHHCCEEEEEEecCC-CC-C----HHHHHHHHHHH----hcCCCEEEEEECCccc
Confidence 2221 24556789999988776532 21 1 11223332211 1578899999999875
No 252
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.96 E-value=0.00015 Score=75.74 Aligned_cols=151 Identities=15% Similarity=0.058 Sum_probs=84.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|||.+++|||+|++++.+..|.. ....|.-..+...... ....+-+.||+|-. .|. .+.-.
T Consensus 4 IvvvGd~~vGKTsLi~~~~~~~f~~-----~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e---------~~~-~l~~~ 68 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAKDAYPG-----SYVPTVFENYTASFEIDKRRIELNMWDTSGSS---------YYD-NVRPL 68 (222)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC-----ccCCccccceEEEEEECCEEEEEEEEeCCCcH---------HHH-HHhHH
Confidence 6799999999999999999988852 1223333333211222 23467789999864 111 12334
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCCh-hch-----------HHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTPL-ENL-----------EPVLR 145 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~~-e~l-----------~~~l~ 145 (772)
.+..+|++|+.....+. .-+..+.+....... ....|+++|.||.|+... ..+ ...-.
T Consensus 69 ~~~~~d~illvfdis~~--------~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g 140 (222)
T cd04173 69 AYPDSDAVLICFDISRP--------ETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQG 140 (222)
T ss_pred hccCCCEEEEEEECCCH--------HHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHH
Confidence 57899999876543332 122222221111111 146899999999997431 111 11111
Q ss_pred HHHH-HHhh-cCCCCCCccCCC-chhhHHHHHh
Q 004126 146 EDIQ-KIWD-SVPKPQAHMETP-LSEFFNVEVV 175 (772)
Q Consensus 146 ~~l~-~iw~-~i~kpsa~~~~~-l~dlf~~~~~ 175 (772)
+.+. .+.. .....|+..+.+ +.++|+....
T Consensus 141 ~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 141 TVLAKQVGAVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred HHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHH
Confidence 1111 2221 234568887774 9999987554
No 253
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.94 E-value=3.7e-05 Score=85.67 Aligned_cols=83 Identities=23% Similarity=0.167 Sum_probs=63.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCe-eeecCCCCCCCCcccceeeEecCCC-----------------CcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNF-REMDAFKGRSQTTKGIWMARCAGIE-----------------PCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkf-sims~~~~r~QTTrGiw~~i~~~~~-----------------~qil~lDteG~~s~ 63 (772)
+.|||.||+|||||+|+|-+.+. .+ . .-|=||...-.|+.+.++ .++.|+|.||+-..
T Consensus 5 ~GivGlPn~GKSTlfnaLT~~~~~~~-a---~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 5 GGIVGLPNVGKSTLFAATTNLLGNEA-A---NPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred EEEECCCCCChHHHHHHHhCCCcccc-C---CCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 57999999999999999999986 43 2 358899999999988755 47999999999632
Q ss_pred C-CCCCc-cHHHHHHHHHHhhcccEEEEeecc
Q 004126 64 E-RGEDD-TAFEKQSALFALAVSDIVLINMWC 93 (772)
Q Consensus 64 e-r~e~~-~~fe~k~alfALa~sDvliiNl~~ 93 (772)
. .|+.. +.| +.-+..+|+++..+-+
T Consensus 81 As~g~Glgn~f-----L~~ir~~d~l~hVvr~ 107 (368)
T TIGR00092 81 ASKGEGLGNQF-----LANIREVDIIQHVVRC 107 (368)
T ss_pred hhcccCcchHH-----HHHHHhCCEEEEEEeC
Confidence 2 23221 334 4457899999888876
No 254
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.94 E-value=7.7e-05 Score=74.77 Aligned_cols=154 Identities=13% Similarity=0.103 Sum_probs=87.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEe--cCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC--AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~--~~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|-+++|||+|++++....|.- ....|.-..+.-.. ......+-++||+|...-.+ +...
T Consensus 4 ivv~G~~~vGKTsli~~~~~~~f~~-----~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~----------~~~~ 68 (176)
T cd04133 4 CVTVGDGAVGKTCMLICYTSNKFPT-----DYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR----------LRPL 68 (176)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC-----CCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc----------cchh
Confidence 6799999999999999999988852 11222222121111 12335778999999751111 1123
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHH-HHHHHHHhhcCCCCccEEEEEeCCCCCChh----------chH-HHHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLK-TVFQVMMRLFSPRKTTLMFVIRDKTRTPLE----------NLE-PVLRED 147 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLk-tv~evnl~lf~~~k~~llfVIrd~d~t~~e----------~l~-~~l~~~ 147 (772)
.+..+|.+|+.....+.--.. .+++ .+.++ .-. ..+.|+++|-||.|+.+.. .+. +...+.
T Consensus 69 ~~~~a~~~ilvyd~~~~~Sf~----~~~~~w~~~i--~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~ 141 (176)
T cd04133 69 SYRGADVFVLAFSLISRASYE----NVLKKWVPEL--RHY-APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEEL 141 (176)
T ss_pred hcCCCcEEEEEEEcCCHHHHH----HHHHHHHHHH--HHh-CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHH
Confidence 467889887754332211111 0111 11111 111 1478999999999975431 121 122222
Q ss_pred HHHHhh-cCCCCCCccCCCchhhHHHHHhhc
Q 004126 148 IQKIWD-SVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 148 l~~iw~-~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
....+. .....|+..+.+++++|+.....+
T Consensus 142 a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 142 RKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 222233 256789999999999999877644
No 255
>PTZ00416 elongation factor 2; Provisional
Probab=97.93 E-value=6.3e-05 Score=92.32 Aligned_cols=112 Identities=20% Similarity=0.203 Sum_probs=70.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCc----------ccceee-------Eec-------CCCCcEEEEec
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTT----------KGIWMA-------RCA-------GIEPCTLIMDL 57 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTT----------rGiw~~-------i~~-------~~~~qil~lDt 57 (772)
|+|+|..++|||||+++|++..=.+-... .+.|+ ||+-+. ..+ ..+..|.|+||
T Consensus 22 i~iiGh~d~GKTTL~~~Ll~~~g~i~~~~--~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt 99 (836)
T PTZ00416 22 MSVIAHVDHGKSTLTDSLVCKAGIISSKN--AGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS 99 (836)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCccccc--CCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence 78999999999999999997321111100 01111 122111 100 11457999999
Q ss_pred CCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 58 EGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 58 eG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
||.+ +|. ..+..|+..+|++|+.+...+ |-. .....+++.+.+ .+.|++++|||+|..
T Consensus 100 PG~~---------~f~-~~~~~al~~~D~ailVvda~~-g~~-~~t~~~~~~~~~--------~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 100 PGHV---------DFS-SEVTAALRVTDGALVVVDCVE-GVC-VQTETVLRQALQ--------ERIRPVLFINKVDRA 157 (836)
T ss_pred CCHH---------hHH-HHHHHHHhcCCeEEEEEECCC-CcC-ccHHHHHHHHHH--------cCCCEEEEEEChhhh
Confidence 9986 233 346888999999999887533 221 233456666665 678999999999864
No 256
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.93 E-value=0.00012 Score=76.78 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=83.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.+||.++||||+|++++.+-.|.- ....|.-..+.-... ...-.+-+.||+|-. + | +.+.-.
T Consensus 16 IvvvGd~~VGKTsLi~r~~~~~F~~-----~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e---~------~-~~~~~~ 80 (232)
T cd04174 16 LVLVGDVQCGKTAMLQVLAKDCYPE-----TYVPTVFENYTAGLETEEQRVELSLWDTSGSP---Y------Y-DNVRPL 80 (232)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC-----CcCCceeeeeEEEEEECCEEEEEEEEeCCCch---h------h-HHHHHH
Confidence 6799999999999999999988852 122232212211111 123567899999853 2 1 112334
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHH-HHHHHHhhcCCCCccEEEEEeCCCCCCh------------hchH-HHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKT-VFQVMMRLFSPRKTTLMFVIRDKTRTPL------------ENLE-PVLR 145 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLkt-v~evnl~lf~~~k~~llfVIrd~d~t~~------------e~l~-~~l~ 145 (772)
.+..+|++|+.....+. ..-. .+++. +.++. + .. ...|+++|.||.|+... ..+. +...
T Consensus 81 ~~~~ad~vIlVyDit~~---~Sf~-~~~~~w~~~i~-~-~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~ 153 (232)
T cd04174 81 CYSDSDAVLLCFDISRP---ETVD-SALKKWKAEIM-D-YC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGC 153 (232)
T ss_pred HcCCCcEEEEEEECCCh---HHHH-HHHHHHHHHHH-H-hC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHH
Confidence 56889998775443221 1110 11111 11111 1 11 36789999999997421 1111 1111
Q ss_pred HHHHHHhh-cCCCCCCccCC-CchhhHHHHHhhc
Q 004126 146 EDIQKIWD-SVPKPQAHMET-PLSEFFNVEVVAL 177 (772)
Q Consensus 146 ~~l~~iw~-~i~kpsa~~~~-~l~dlf~~~~~~L 177 (772)
+..+.+-. .....|+..+. +++++|+......
T Consensus 154 ~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 154 ALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 11111111 13467888887 7999998766544
No 257
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.93 E-value=1.5e-05 Score=77.35 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=40.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGT 60 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~ 60 (772)
|.++|.+|+|||||+|+|.|......++ .+.||++.-+... +..+.++||||+
T Consensus 104 ~~~ig~~~~Gkssl~~~l~~~~~~~~~~---~~~~t~~~~~~~~---~~~~~~~DtpGi 156 (156)
T cd01859 104 VGVVGYPNVGKSSIINALKGRHSASTSP---SPGYTKGEQLVKI---TSKIYLLDTPGV 156 (156)
T ss_pred EEEECCCCCCHHHHHHHHhCCCccccCC---CCCeeeeeEEEEc---CCCEEEEECcCC
Confidence 5799999999999999999977655553 4567877543322 347899999996
No 258
>PRK00098 GTPase RsgA; Reviewed
Probab=97.91 E-value=1.3e-05 Score=87.00 Aligned_cols=61 Identities=25% Similarity=0.151 Sum_probs=41.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCC---CCCCC-CcccceeeEecCCCCcEEEEecCCCCCcC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAF---KGRSQ-TTKGIWMARCAGIEPCTLIMDLEGTDGRE 64 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~---~~r~Q-TTrGiw~~i~~~~~~qil~lDteG~~s~e 64 (772)
++.++|++|+|||||+|.|.|..-...+.. .++++ ||++.-+.... ....++||||+.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~---~~~~~~DtpG~~~~~ 230 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP---GGGLLIDTPGFSSFG 230 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC---CCcEEEECCCcCccC
Confidence 368999999999999999999643322221 22333 77776554443 234889999997543
No 259
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.91 E-value=5.5e-05 Score=72.73 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=86.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeE--ec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR--CA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i--~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.++|.++||||||+|.+.+..|.- ....|-|.=... .. .....+-+.|++|-. + |.. ..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~---~------~~~-~~ 65 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGEFPE------NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQE---R------FDS-LR 65 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSTTS------SSETTSSEEEEEEEEEETTEEEEEEEEEETTSG---G------GHH-HH
T ss_pred EEEECCCCCCHHHHHHHHHhhcccc------ccccccccccccccccccccccccccccccccc---c------ccc-cc
Confidence 6899999999999999999998852 233343222221 11 233568899999853 2 111 12
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH-HHHHHHHHHhhcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP-VLREDIQKIWDSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~-~l~~~l~~iw~~i~ 156 (772)
...+..+|++|+... +... +...-++...+..... .+..+|+++|-+|.|......+.. ...+.....-....
T Consensus 66 ~~~~~~~~~~ii~fd---~~~~--~S~~~~~~~~~~i~~~-~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~ 139 (162)
T PF00071_consen 66 DIFYRNSDAIIIVFD---VTDE--ESFENLKKWLEEIQKY-KPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYF 139 (162)
T ss_dssp HHHHTTESEEEEEEE---TTBH--HHHHTHHHHHHHHHHH-STTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEE
T ss_pred ccccccccccccccc---cccc--cccccccccccccccc-ccccccceeeeccccccccccchhhHHHHHHHHhCCEEE
Confidence 234678998876432 3211 1122222222211111 224588999999998765443332 22222222212344
Q ss_pred CCCCccCCCchhhHHHHHhh
Q 004126 157 KPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~ 176 (772)
..++..+.++.++|...+..
T Consensus 140 e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 140 EVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp EEBTTTTTTHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 56788889999999876543
No 260
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.86 E-value=0.00011 Score=74.89 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=80.9
Q ss_pred EEEeCCCCCChHHHHhHHh-CCCeeeecCCCCCCCCcc--cceee----------EecCCCCcEEEEecCCCCCcCCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLF-GTNFREMDAFKGRSQTTK--GIWMA----------RCAGIEPCTLIMDLEGTDGRERGED 68 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf-Gtkfsims~~~~r~QTTr--Giw~~----------i~~~~~~qil~lDteG~~s~er~e~ 68 (772)
|.++|-+++|||+|+++.+ +..|.--.-......|+- +...- ...+....+.+.||+|.+...
T Consensus 5 iv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~~---- 80 (195)
T cd01873 5 CVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDKD---- 80 (195)
T ss_pred EEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhhh----
Confidence 6899999999999997544 433321000001223331 11110 122334678899999986211
Q ss_pred ccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHH-HHHHHHHhhcCCCCccEEEEEeCCCCCCh----------
Q 004126 69 DTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLK-TVFQVMMRLFSPRKTTLMFVIRDKTRTPL---------- 137 (772)
Q Consensus 69 ~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLk-tv~evnl~lf~~~k~~llfVIrd~d~t~~---------- 137 (772)
+ ...+..+|++|+.....+. . ...-++ ...+. ++-.. ...|+++|.||.|+...
T Consensus 81 -----~---~~~~~~ad~iilv~d~t~~---~--Sf~~~~~~w~~~-i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 81 -----R---RFAYGRSDVVLLCFSIASP---N--SLRNVKTMWYPE-IRHFC-PRVPVILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred -----h---cccCCCCCEEEEEEECCCh---h--HHHHHHHHHHHH-HHHhC-CCCCEEEEEEchhccccccchhhhccc
Confidence 1 1246789998775443221 1 111121 11111 11111 46789999999996421
Q ss_pred ---------hchH-HHHHHHHHHHhhcCCCCCCccCCCchhhHHHHH
Q 004126 138 ---------ENLE-PVLREDIQKIWDSVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 138 ---------e~l~-~~l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~ 174 (772)
..+. +...+.-.++--.....|+..+.+++++|+...
T Consensus 146 ~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~ 192 (195)
T cd01873 146 PLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAI 192 (195)
T ss_pred ccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHH
Confidence 1111 111222222212355679999999999998765
No 261
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.85 E-value=1.9e-05 Score=85.31 Aligned_cols=60 Identities=23% Similarity=0.119 Sum_probs=41.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCC---CCC-CCCcccceeeEecCCCCcEEEEecCCCCCc
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAF---KGR-SQTTKGIWMARCAGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~---~~r-~QTTrGiw~~i~~~~~~qil~lDteG~~s~ 63 (772)
++.++|++|+|||||+|.|+|......++. .++ ..||++..+-... ...+++||||+...
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~---~~~~liDtPG~~~~ 226 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP---GGGLLIDTPGFREF 226 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC---CCCEEEECCCCCcc
Confidence 478999999999999999999754433221 122 2478877554443 23478999999643
No 262
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.82 E-value=8.7e-05 Score=89.89 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=67.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCc----------cccee--------eEecCCCCcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTT----------KGIWM--------ARCAGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTT----------rGiw~--------~i~~~~~~qil~lDteG~~s~ 63 (772)
|+|+|..++|||||.++|+...=.+-... .+.+| ||+-+ +.....+.++.|+||||.+.
T Consensus 23 i~iigh~d~GKTTL~e~ll~~~g~i~~~~--~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d- 99 (731)
T PRK07560 23 IGIIAHIDHGKTTLSDNLLAGAGMISEEL--AGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD- 99 (731)
T ss_pred EEEEEeCCCCHHHHHHHHHHHcCCcchhh--cCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC-
Confidence 78999999999999999985211111000 01111 22211 11123467899999999972
Q ss_pred CCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 64 ERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 64 er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
|. ..+.-++..+|++|+.+...+ |. ......+++...+ .+.|.+++|||+|..
T Consensus 100 --------f~-~~~~~~l~~~D~avlVvda~~-g~-~~~t~~~~~~~~~--------~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 100 --------FG-GDVTRAMRAVDGAIVVVDAVE-GV-MPQTETVLRQALR--------ERVKPVLFINKVDRL 152 (731)
T ss_pred --------hH-HHHHHHHHhcCEEEEEEECCC-CC-CccHHHHHHHHHH--------cCCCeEEEEECchhh
Confidence 32 356778899999988776532 21 2223334444333 345668999999864
No 263
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0016 Score=76.56 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCe
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNF 24 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkf 24 (772)
|+|.|+.|+||||+.|+|+-.++
T Consensus 112 V~ifGrts~GKSt~iNAmL~~kl 134 (749)
T KOG0448|consen 112 VAIFGRTSAGKSTVINAMLHKKL 134 (749)
T ss_pred EEEeCCCCCcHHHHHHHHHHHhh
Confidence 89999999999999999996544
No 264
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.75 E-value=3.2e-05 Score=77.75 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCe
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNF 24 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkf 24 (772)
+.++|.+|+|||||+|+|+|...
T Consensus 130 ~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 130 VYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcc
Confidence 67999999999999999999654
No 265
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.75 E-value=2.9e-05 Score=83.92 Aligned_cols=61 Identities=25% Similarity=0.194 Sum_probs=46.0
Q ss_pred EEEeCCCCCChHHHHhHHhCC---CeeeecCCCCCCC-CcccceeeEecCCCCcEEEEecCCCCCcCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT---NFREMDAFKGRSQ-TTKGIWMARCAGIEPCTLIMDLEGTDGRER 65 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt---kfsims~~~~r~Q-TTrGiw~~i~~~~~~qil~lDteG~~s~er 65 (772)
.+++|.-++|||||+|+|.+. +...+|+..+|++ ||++.-|-..+ ..=.++||||+.+.+-
T Consensus 167 svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~---~gG~iiDTPGf~~~~l 231 (301)
T COG1162 167 TVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP---GGGWIIDTPGFRSLGL 231 (301)
T ss_pred EEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC---CCCEEEeCCCCCccCc
Confidence 578999999999999999983 4445565555666 88888876664 2336789999986664
No 266
>PRK13768 GTPase; Provisional
Probab=97.71 E-value=0.0001 Score=78.18 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=87.9
Q ss_pred EEEeCCCCCChHHHHhHHh------CCCeeeecCCCCCCC--Cccc----ceee------E---ec--------------
Q 004126 2 CHIFFVIMTGKSTLLNHLF------GTNFREMDAFKGRSQ--TTKG----IWMA------R---CA-------------- 46 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf------Gtkfsims~~~~r~Q--TTrG----iw~~------i---~~-------------- 46 (772)
+.|.|++||||||+...+. |.++.+++.-.+... .+++ -|.. . .+
T Consensus 5 i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~~~~ 84 (253)
T PRK13768 5 VFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLLTK 84 (253)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 5789999999999877665 677777653211110 0000 1111 0 01
Q ss_pred ---------CCCCcEEEEecCCCCCcC--CCCCccHHHHHHHHHHhhc--ccEEEEeeccccccccccCCHHHHHHHHHH
Q 004126 47 ---------GIEPCTLIMDLEGTDGRE--RGEDDTAFEKQSALFALAV--SDIVLINMWCHDIGREQAANKPLLKTVFQV 113 (772)
Q Consensus 47 ---------~~~~qil~lDteG~~s~e--r~e~~~~fe~k~alfALa~--sDvliiNl~~~dig~~~~~n~~lLktv~ev 113 (772)
.....++++||||....- +... ..+. ..+.. ++++++.+.....- ..........+. .
T Consensus 85 ~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~-~~~~-----~~l~~~~~~~ii~liD~~~~~--~~~d~~~~~~l~-~ 155 (253)
T PRK13768 85 ADEIKEEIESLDADYVLVDTPGQMELFAFRESG-RKLV-----ERLSGSSKSVVVFLIDAVLAK--TPSDFVSLLLLA-L 155 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHH-HHHH-----HHHHhcCCeEEEEEechHHhC--CHHHHHHHHHHH-H
Confidence 012479999999986432 2110 1121 12222 78887766542211 111111111110 0
Q ss_pred HHhhcCCCCccEEEEEeCCCCCChhchH---HHHH------------------------HHHHHHh--hcCCCCCCccCC
Q 004126 114 MMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLR------------------------EDIQKIW--DSVPKPQAHMET 164 (772)
Q Consensus 114 nl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~------------------------~~l~~iw--~~i~kpsa~~~~ 164 (772)
...+ ....|+++|+||.|..+.+..+ +.+. +.+..+. ..+.+.|+..+.
T Consensus 156 ~~~~--~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~ 233 (253)
T PRK13768 156 SVQL--RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGE 233 (253)
T ss_pred HHHH--HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCc
Confidence 0001 1468999999999976544332 2222 1222332 245677888888
Q ss_pred CchhhHHHHHhhcCC
Q 004126 165 PLSEFFNVEVVALSS 179 (772)
Q Consensus 165 ~l~dlf~~~~~~Lph 179 (772)
+++++.+.+...||.
T Consensus 234 gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 234 GFDELYAAIQEVFCG 248 (253)
T ss_pred CHHHHHHHHHHHcCC
Confidence 888888888887775
No 267
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00025 Score=78.64 Aligned_cols=82 Identities=20% Similarity=0.135 Sum_probs=61.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC------------------CcEEEEecCCCC-C
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE------------------PCTLIMDLEGTD-G 62 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~------------------~qil~lDteG~~-s 62 (772)
+.|||.||+|||||.|+|-.....+- +.|=||-..-.|+...++ .++=|+|+.|+- |
T Consensus 5 ~GIVGlPNVGKSTlFnAlT~~~a~~a----NYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 5 IGIVGLPNVGKSTLFNALTKAGAEIA----NYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred eEEecCCCCcHHHHHHHHHcCCcccc----CCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 67999999999999999999885443 478899888888876522 367789999885 2
Q ss_pred --cCCCCCccHHHHHHHHHHhhcccEEEEeecc
Q 004126 63 --RERGEDDTAFEKQSALFALAVSDIVLINMWC 93 (772)
Q Consensus 63 --~er~e~~~~fe~k~alfALa~sDvliiNl~~ 93 (772)
..+|.. +.|+ --+..+|.++-.+-|
T Consensus 81 As~GeGLG-NkFL-----~~IRevdaI~hVVr~ 107 (372)
T COG0012 81 ASKGEGLG-NKFL-----DNIREVDAIIHVVRC 107 (372)
T ss_pred cccCCCcc-hHHH-----HhhhhcCeEEEEEEe
Confidence 334432 5664 447899999888776
No 268
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.69 E-value=0.00018 Score=75.92 Aligned_cols=111 Identities=21% Similarity=0.193 Sum_probs=70.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCC-----CCcCCCCCccHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGT-----DGRERGEDDTAFEKQS 76 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~-----~s~er~e~~~~fe~k~ 76 (772)
|..+|-||+||||||+.|.|+-=.+-+ .--||--.+-|+..-....|=++|.||+ ||+.||. .
T Consensus 62 vg~vgFPSvGksTl~~~l~g~~s~vas----yefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~--------q 129 (358)
T KOG1487|consen 62 VGFVGFPSVGKSTLLSKLTGTFSEVAA----YEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGK--------Q 129 (358)
T ss_pred eeEEecCccchhhhhhhhcCCCCcccc----ccceeEEEecceEeccccceeeecCcchhcccccCCCCcc--------E
Confidence 678999999999999999997555433 3446666666666666788999999998 4555552 2
Q ss_pred HHHHhhcccEEEEeeccc-cccccccCCHHHHHHHHHHHHhhcCC----CCccEEEEEeCCC
Q 004126 77 ALFALAVSDIVLINMWCH-DIGREQAANKPLLKTVFQVMMRLFSP----RKTTLMFVIRDKT 133 (772)
Q Consensus 77 alfALa~sDvliiNl~~~-dig~~~~~n~~lLktv~evnl~lf~~----~k~~llfVIrd~d 133 (772)
.......+.++++.+.+. .++ . |.+.|--|.=|+- ..+.+.+-=+|.+
T Consensus 130 viavartcnli~~vld~~kp~~-----h----k~~ie~eleg~girlnk~pp~i~~kkKdkg 182 (358)
T KOG1487|consen 130 VIAVARTCNLIFIVLDVLKPLS-----H----KKIIEKELEGFGIRLNKQPPNIGTKKKDKG 182 (358)
T ss_pred EEEEeecccEEEEEeeccCccc-----H----HHHHHHhhhcceeeccCCCCCccccccccC
Confidence 223334788888877652 222 2 4455555555542 2333444445553
No 269
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.64 E-value=0.00056 Score=69.40 Aligned_cols=116 Identities=17% Similarity=0.070 Sum_probs=65.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC---CCcEEEEecCCCCCcCCCCCccHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI---EPCTLIMDLEGTDGRERGEDDTAFEKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~---~~qil~lDteG~~s~er~e~~~~fe~k~al 78 (772)
|.|+|..|+|||||+|+|.+-.|... .+-|.-..+.+..... ...+.++||+|...-. ...-
T Consensus 8 ivv~G~~g~GKTtl~~~l~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~----------~~~~ 72 (219)
T COG1100 8 IVVLGDGGVGKTTLLNRLVGDEFPEG-----YPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR----------SLRP 72 (219)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCccc-----CCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHH----------HHHH
Confidence 67999999999999999999999842 2222222222222221 2348889999986211 1222
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 137 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~ 137 (772)
.-...++.+++.....+.- .-..+.+...+.-..+. ....++++|.+|.|+.+.
T Consensus 73 ~y~~~~~~~l~~~d~~~~~----~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 73 EYYRGANGILIVYDSTLRE----SSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDE 126 (219)
T ss_pred HHhcCCCEEEEEEecccch----hhhHHHHHHHHHHHHhC-CCCceEEEEecccccccc
Confidence 2335677776644433311 11122233332211111 135899999999987544
No 270
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.58 E-value=0.00057 Score=84.17 Aligned_cols=112 Identities=19% Similarity=0.239 Sum_probs=69.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCc----------ccceee-------E-------------ecCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTT----------KGIWMA-------R-------------CAGIEPC 51 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTT----------rGiw~~-------i-------------~~~~~~q 51 (772)
|+|+|..++|||||+++|+...=.|-.. ..+.|+ ||+-+. . ....+..
T Consensus 22 i~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
T PLN00116 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYL 99 (843)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceE
Confidence 7899999999999999998532111110 011111 121111 1 0112345
Q ss_pred EEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeC
Q 004126 52 TLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRD 131 (772)
Q Consensus 52 il~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd 131 (772)
|-++||||-. +|... +..|+..+|..|+.+.+.+ |-. .....+++.+.+ .+.|++++|||
T Consensus 100 inliDtPGh~---------dF~~e-~~~al~~~D~ailVvda~~-Gv~-~~t~~~~~~~~~--------~~~p~i~~iNK 159 (843)
T PLN00116 100 INLIDSPGHV---------DFSSE-VTAALRITDGALVVVDCIE-GVC-VQTETVLRQALG--------ERIRPVLTVNK 159 (843)
T ss_pred EEEECCCCHH---------HHHHH-HHHHHhhcCEEEEEEECCC-CCc-ccHHHHHHHHHH--------CCCCEEEEEEC
Confidence 6799999973 45443 4788899999998887642 211 123345555555 68899999999
Q ss_pred CCCC
Q 004126 132 KTRT 135 (772)
Q Consensus 132 ~d~t 135 (772)
+|..
T Consensus 160 ~D~~ 163 (843)
T PLN00116 160 MDRC 163 (843)
T ss_pred Cccc
Confidence 9976
No 271
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.56 E-value=0.00013 Score=77.59 Aligned_cols=145 Identities=18% Similarity=0.219 Sum_probs=81.1
Q ss_pred EEEeCCCCCChHHHHhHHh------CCCeeeecCCCCCCCCcccceeeEecC----------------------------
Q 004126 2 CHIFFVIMTGKSTLLNHLF------GTNFREMDAFKGRSQTTKGIWMARCAG---------------------------- 47 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf------Gtkfsims~~~~r~QTTrGiw~~i~~~---------------------------- 47 (772)
|.|-|+|++|||||++.|. |.++.|+.-- +.+.-|-|.++|=-..
T Consensus 32 iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD-PSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~~t 110 (266)
T PF03308_consen 32 IGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD-PSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSRAT 110 (266)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE--GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHHHH
T ss_pred EEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC-CCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccHhH
Confidence 6789999999999999997 7888887321 3455677777763221
Q ss_pred ---------CCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHH-HHHHHHHHhh
Q 004126 48 ---------IEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLL-KTVFQVMMRL 117 (772)
Q Consensus 48 ---------~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lL-ktv~evnl~l 117 (772)
-...+|++-|-|+.- .+.+ -...+|++++.+-- ..| +..-.+ .-++|
T Consensus 111 ~~~v~ll~aaG~D~IiiETVGvGQ-------sE~~------I~~~aD~~v~v~~P-g~G----D~iQ~~KaGimE----- 167 (266)
T PF03308_consen 111 RDAVRLLDAAGFDVIIIETVGVGQ-------SEVD------IADMADTVVLVLVP-GLG----DEIQAIKAGIME----- 167 (266)
T ss_dssp HHHHHHHHHTT-SEEEEEEESSST-------HHHH------HHTTSSEEEEEEES-STC----CCCCTB-TTHHH-----
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCc-------cHHH------HHHhcCeEEEEecC-CCc----cHHHHHhhhhhh-----
Confidence 236888888888861 1211 23578887765532 222 211111 22333
Q ss_pred cCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH------hh-cCCCCCCccCCCchhhHHHHHh
Q 004126 118 FSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI------WD-SVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 118 f~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i------w~-~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
..=+|||||.|...-+.....+...+... |. .|.+.++.++.+++++++.+..
T Consensus 168 -----iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 168 -----IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp -----H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred -----hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 22369999999544444444444444322 43 4566788999999999987644
No 272
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.55 E-value=0.00031 Score=71.23 Aligned_cols=132 Identities=12% Similarity=0.141 Sum_probs=72.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|-|+|+.+|||++|.+.|..-++.-.=. +- +...+... .......+-++|+||=. +=|. .+.... ..+
T Consensus 6 vlL~Gps~SGKTaLf~~L~~~~~~~T~t--S~-e~n~~~~~--~~~~~~~~~lvD~PGH~-rlr~----~~~~~~--~~~ 73 (181)
T PF09439_consen 6 VLLVGPSGSGKTALFSQLVNGKTVPTVT--SM-ENNIAYNV--NNSKGKKLRLVDIPGHP-RLRS----KLLDEL--KYL 73 (181)
T ss_dssp EEEE-STTSSHHHHHHHHHHSS---B-----S-SEEEECCG--SSTCGTCECEEEETT-H-CCCH----HHHHHH--HHH
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcCCeec--cc-cCCceEEe--ecCCCCEEEEEECCCcH-HHHH----HHHHhh--hch
Confidence 6799999999999999999764422111 11 22222111 22345688999999964 3332 232221 135
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhc-----CCCCccEEEEEeCCCCC---ChhchHHHHHHHHHHHh
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF-----SPRKTTLMFVIRDKTRT---PLENLEPVLREDIQKIW 152 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf-----~~~k~~llfVIrd~d~t---~~e~l~~~l~~~l~~iw 152 (772)
..+-.||+.++..... .-++.+.|.-..++ .+.++|++++.||.|.. |...++..|+..++++-
T Consensus 74 ~~~k~IIfvvDSs~~~-------~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~~lr 145 (181)
T PF09439_consen 74 SNAKGIIFVVDSSTDQ-------KELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEIDKLR 145 (181)
T ss_dssp GGEEEEEEEEETTTHH-------HHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHHHHH
T ss_pred hhCCEEEEEEeCccch-------hhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHHHHH
Confidence 6677888877653211 11222222222222 24789999999999863 66778888888888773
No 273
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00043 Score=79.52 Aligned_cols=146 Identities=19% Similarity=0.259 Sum_probs=102.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC---CCcEEEEecCCCCC----cCCCCCccHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI---EPCTLIMDLEGTDG----RERGEDDTAFE 73 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~---~~qil~lDteG~~s----~er~e~~~~fe 73 (772)
+|+|+|.==-||||||-.+=+++++-..+ +-=|.+|-....+.+ ...|.||||||=.+ +.||
T Consensus 7 vVtimGHVDHGKTtLLD~IR~t~Va~~Ea----GGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRG------- 75 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKIRKTNVAAGEA----GGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARG------- 75 (509)
T ss_pred EEEEeCcccCCccchhhhHhcCccccccC----CceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcC-------
Confidence 48999999999999999999999986543 567888877777653 46999999999531 2232
Q ss_pred HHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC--ChhchHHHHHHH-H-H
Q 004126 74 KQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT--PLENLEPVLRED-I-Q 149 (772)
Q Consensus 74 ~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t--~~e~l~~~l~~~-l-~ 149 (772)
-+.+|++|+.+...| |..+ +...-++.... .++|+++++||+|+. +.+.+...+.+. + .
T Consensus 76 -------a~vtDIaILVVa~dD-Gv~p-QTiEAI~hak~--------a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~ 138 (509)
T COG0532 76 -------ASVTDIAILVVAADD-GVMP-QTIEAINHAKA--------AGVPIVVAINKIDKPEANPDKVKQELQEYGLVP 138 (509)
T ss_pred -------CccccEEEEEEEccC-Ccch-hHHHHHHHHHH--------CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCH
Confidence 268999998876543 3222 22333444444 799999999999975 334444443332 1 1
Q ss_pred HHhh---cCCCCCCccCCCchhhHHHHH
Q 004126 150 KIWD---SVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 150 ~iw~---~i~kpsa~~~~~l~dlf~~~~ 174 (772)
.-|. .+++.||..+.++++|++...
T Consensus 139 E~~gg~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 139 EEWGGDVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred hhcCCceEEEEeeccCCCCHHHHHHHHH
Confidence 1254 456889999999999998754
No 274
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.55 E-value=8.1e-05 Score=84.69 Aligned_cols=54 Identities=20% Similarity=0.157 Sum_probs=44.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD 61 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~ 61 (772)
|.+||.||||||.++|+|.|.|--=+|. -|--||+.-.-.+ ...+.+.||||+-
T Consensus 317 VG~VGYPNVGKSSTINaLvG~KkVsVS~---TPGkTKHFQTi~l---s~~v~LCDCPGLV 370 (562)
T KOG1424|consen 317 VGFVGYPNVGKSSTINALVGRKKVSVSS---TPGKTKHFQTIFL---SPSVCLCDCPGLV 370 (562)
T ss_pred EEeecCCCCchhHHHHHHhcCceeeeec---CCCCcceeEEEEc---CCCceecCCCCcc
Confidence 7899999999999999999976655553 4667998876555 4788999999997
No 275
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00064 Score=73.44 Aligned_cols=43 Identities=28% Similarity=0.139 Sum_probs=35.6
Q ss_pred EEEeCCCCCChHHHHhHHh------CCCeeeecCCCCCCCCcccceeeEe
Q 004126 2 CHIFFVIMTGKSTLLNHLF------GTNFREMDAFKGRSQTTKGIWMARC 45 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf------Gtkfsims~~~~r~QTTrGiw~~i~ 45 (772)
|.|-|.|++|||||+-.|. |.+++|+.-- +.+|-|.|.++|=-
T Consensus 54 iGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD-PSSp~TGGsiLGDR 102 (323)
T COG1703 54 IGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD-PSSPFTGGSILGDR 102 (323)
T ss_pred EEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC-CCCCCCCccccccH
Confidence 6789999999999999987 7889988432 56788999998843
No 276
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.43 E-value=0.0011 Score=65.89 Aligned_cols=148 Identities=19% Similarity=0.201 Sum_probs=92.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|-|+|+-||||+|++++|.|...+.+++ |.|--+--...++.++.+.|+-|=-. ++..---=.
T Consensus 19 iLiLGLdNsGKTti~~kl~~~~~~~i~p-------t~gf~Iktl~~~~~~L~iwDvGGq~~----------lr~~W~nYf 81 (185)
T KOG0073|consen 19 ILILGLDNSGKTTIVKKLLGEDTDTISP-------TLGFQIKTLEYKGYTLNIWDVGGQKT----------LRSYWKNYF 81 (185)
T ss_pred EEEEecCCCCchhHHHHhcCCCccccCC-------ccceeeEEEEecceEEEEEEcCCcch----------hHHHHHHhh
Confidence 5689999999999999999999777664 45555544455789999999877542 122222234
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC---ChhchHHHHHHHHHHH-----hh
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT---PLENLEPVLREDIQKI-----WD 153 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t---~~e~l~~~l~~~l~~i-----w~ 153 (772)
+.+|-+|+.+...|.-|.++.-..|-..+.+ -++ ..+|++++-|+.|.. ..+.+...+ +++.+ |.
T Consensus 82 estdglIwvvDssD~~r~~e~~~~L~~lL~e--erl---aG~~~Lvlank~dl~~~l~~~~i~~~~--~L~~l~ks~~~~ 154 (185)
T KOG0073|consen 82 ESTDGLIWVVDSSDRMRMQECKQELTELLVE--ERL---AGAPLLVLANKQDLPGALSLEEISKAL--DLEELAKSHHWR 154 (185)
T ss_pred hccCeEEEEEECchHHHHHHHHHHHHHHHhh--hhh---cCCceEEEEecCcCccccCHHHHHHhh--CHHHhccccCce
Confidence 6889996666554444433322212122222 111 348899999999864 344454332 22223 66
Q ss_pred cCCCCCCccCCCchhhHHHHH
Q 004126 154 SVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~ 174 (772)
+.+.++.++.++.+=|+-..
T Consensus 155 -l~~cs~~tge~l~~gidWL~ 174 (185)
T KOG0073|consen 155 -LVKCSAVTGEDLLEGIDWLC 174 (185)
T ss_pred -EEEEeccccccHHHHHHHHH
Confidence 78889988887766665443
No 277
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.41 E-value=0.00049 Score=74.59 Aligned_cols=156 Identities=14% Similarity=0.097 Sum_probs=84.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCC-----CeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT-----NFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQ 75 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt-----kfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k 75 (772)
+|.|+|.|||||||||++|.+. ++.++. +..+|+.+.-+ + ...+.+++.+-|.+.- .. ...|..
T Consensus 106 ~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~---gD~~t~~Da~r-I-~~~g~pvvqi~tG~~C----hl--~a~mv~ 174 (290)
T PRK10463 106 VLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIE---GDQQTVNDAAR-I-RATGTPAIQVNTGKGC----HL--DAQMIA 174 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCCEEEEC---CCcCcHHHHHH-H-HhcCCcEEEecCCCCC----cC--cHHHHH
Confidence 4789999999999999888763 455554 34444333221 1 1123456666554332 11 344555
Q ss_pred HHHHHhhc--ccEEEEeeccccccc--cccCCHHHHHHHHHH-HHhh--c-C-C------CCccEEEEEeCCCCCCh--h
Q 004126 76 SALFALAV--SDIVLINMWCHDIGR--EQAANKPLLKTVFQV-MMRL--F-S-P------RKTTLMFVIRDKTRTPL--E 138 (772)
Q Consensus 76 ~alfALa~--sDvliiNl~~~dig~--~~~~n~~lLktv~ev-nl~l--f-~-~------~k~~llfVIrd~d~t~~--e 138 (772)
.|+..|.. .|+++|- .+|. .++ .. -|..-+.+ .+.+ + . + ....-++||||+|+.+. .
T Consensus 175 ~Al~~L~~~~~d~liIE----nvGnLvcPa-~f-dlge~~~v~vlsV~eg~dkplKyp~~f~~ADIVVLNKiDLl~~~~~ 248 (290)
T PRK10463 175 DAAPRLPLDDNGILFIE----NVGNLVCPA-SF-DLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNF 248 (290)
T ss_pred HHHHHHhhcCCcEEEEE----CCCCccCCC-cc-chhhceeEEEEECccccccchhccchhhcCcEEEEEhHHcCcccHH
Confidence 66666664 4666552 2332 111 00 00000000 0000 0 0 0 12445899999998763 2
Q ss_pred chHHHHHHHHHHH--hhcCCCCCCccCCCchhhHHHHH
Q 004126 139 NLEPVLREDIQKI--WDSVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 139 ~l~~~l~~~l~~i--w~~i~kpsa~~~~~l~dlf~~~~ 174 (772)
.++. +.+++..+ +..|.+.|+..+.+++++.+...
T Consensus 249 dle~-~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~ 285 (290)
T PRK10463 249 DVEK-CIACAREVNPEIEIILISATSGEGMDQWLNWLE 285 (290)
T ss_pred HHHH-HHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3443 33445455 56788889999999999988754
No 278
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0011 Score=73.02 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=79.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--------------------------------
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI-------------------------------- 48 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~-------------------------------- 48 (772)
||-++|.+|+||||.+|+|.+..|.-+-. |---|| ..+.++..++
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~ri--GpEPTt-d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRI--GPEPTT-DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCcccc--CCCCCc-ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 68899999999999999999988874432 222233 2333332220
Q ss_pred ---------CCcEEEEecCCCCCcCCCCCc--cHHHHHHHHHHhhcccEEEEeeccc--cccccccCCHHHHHHHHHHHH
Q 004126 49 ---------EPCTLIMDLEGTDGRERGEDD--TAFEKQSALFALAVSDIVLINMWCH--DIGREQAANKPLLKTVFQVMM 115 (772)
Q Consensus 49 ---------~~qil~lDteG~~s~er~e~~--~~fe~k~alfALa~sDvliiNl~~~--dig~~~~~n~~lLktv~evnl 115 (772)
=..|-++||||+.+.++..-. -+|---.-.|| .-+|.+|+....| ||+ + ..+.+..
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFa-eR~D~IiLlfD~hKLDIs--d-----Ef~~vi~--- 205 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFA-ERVDRIILLFDAHKLDIS--D-----EFKRVID--- 205 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHH-HhccEEEEEechhhcccc--H-----HHHHHHH---
Confidence 047889999999976643111 12333333443 4689888766555 444 1 1222222
Q ss_pred hhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh
Q 004126 116 RLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 153 (772)
Q Consensus 116 ~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~ 153 (772)
+|-+ +.-.+=+|+||.|.+..++|-.. +-..+|+
T Consensus 206 aLkG-~EdkiRVVLNKADqVdtqqLmRV---yGALmWs 239 (532)
T KOG1954|consen 206 ALKG-HEDKIRVVLNKADQVDTQQLMRV---YGALMWS 239 (532)
T ss_pred HhhC-CcceeEEEeccccccCHHHHHHH---HHHHHHh
Confidence 2222 33445579999998877665433 2234687
No 279
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.26 E-value=0.0015 Score=75.00 Aligned_cols=153 Identities=13% Similarity=0.140 Sum_probs=82.8
Q ss_pred EEEeCCCCCChHHHHhHHhC-CC---------e---------------eeecCC--CCCCCCcccceeeEecCCCCcEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFG-TN---------F---------------REMDAF--KGRSQTTKGIWMARCAGIEPCTLI 54 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG-tk---------f---------------sims~~--~~r~QTTrGiw~~i~~~~~~qil~ 54 (772)
|+++|.-.+|||||+-+|+- ++ + .+||.. ......|-.+-..........+-+
T Consensus 10 i~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~l 89 (447)
T PLN00043 10 IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTV 89 (447)
T ss_pred EEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEE
Confidence 68999999999999988862 11 1 123321 011112222212222234568899
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccc-cCC-HHHHHHHHHHHHhhcCCCCccEEEEEeCC
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQ-AAN-KPLLKTVFQVMMRLFSPRKTTLMFVIRDK 132 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~-~~n-~~lLktv~evnl~lf~~~k~~llfVIrd~ 132 (772)
+||||- .+|.. ....++..+|+.|+.+...+ |-.. +-. .+-.+....+ +.....+++++++||+
T Consensus 90 iDtPGh---------~df~~-~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~---~~~~gi~~iIV~vNKm 155 (447)
T PLN00043 90 IDAPGH---------RDFIK-NMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALL---AFTLGVKQMICCCNKM 155 (447)
T ss_pred EECCCH---------HHHHH-HHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHH---HHHcCCCcEEEEEEcc
Confidence 999994 34554 34667789999998887654 3111 110 0111111110 0001345689999999
Q ss_pred CCCChh-------chHHHHHHHHHHH-hh----cCCCCCCccCCCchh
Q 004126 133 TRTPLE-------NLEPVLREDIQKI-WD----SVPKPQAHMETPLSE 168 (772)
Q Consensus 133 d~t~~e-------~l~~~l~~~l~~i-w~----~i~kpsa~~~~~l~d 168 (772)
|..+.+ .+.+.+...+..+ |. .+++.|++.+.++.+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 975322 2223344444433 22 245778998888754
No 280
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.23 E-value=0.0032 Score=64.78 Aligned_cols=116 Identities=12% Similarity=0.117 Sum_probs=67.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceee--Eec-------CCCCcEEEEecCCCCCcCCCCCccHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA--RCA-------GIEPCTLIMDLEGTDGRERGEDDTAF 72 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~--i~~-------~~~~qil~lDteG~~s~er~e~~~~f 72 (772)
|.++|-.++|||+|+|++.+..|.- ..+.|-|.-.. ... .....+-+.||+|-. + |
T Consensus 3 IvlvGd~gVGKTSLi~~~~~~~f~~------~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e---~------~ 67 (202)
T cd04102 3 VLVVGDSGVGKSSLVHLICKNQVLG------RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE---S------V 67 (202)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC------CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch---h------H
Confidence 6899999999999999999988852 23444442111 111 112357789999874 1 1
Q ss_pred HHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHh-----------------hcCCCCccEEEEEeCCCCC
Q 004126 73 EKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMR-----------------LFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 73 e~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~-----------------lf~~~k~~llfVIrd~d~t 135 (772)
+...-..+..+|++|+.....+. .. -..+-+.+.++... .+.....|+++|-||.|+.
T Consensus 68 -~~l~~~~yr~ad~iIlVyDvtn~---~S-f~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 68 -KSTRAVFYNQVNGIILVHDLTNR---KS-SQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred -HHHHHHHhCcCCEEEEEEECcCh---HH-HHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 11223346789999875543221 11 11122222232211 1223468999999999986
Q ss_pred Ch
Q 004126 136 PL 137 (772)
Q Consensus 136 ~~ 137 (772)
+.
T Consensus 143 ~~ 144 (202)
T cd04102 143 PE 144 (202)
T ss_pred hh
Confidence 54
No 281
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.19 E-value=0.00029 Score=76.56 Aligned_cols=146 Identities=21% Similarity=0.158 Sum_probs=81.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC-------CeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT-------NFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFE 73 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt-------kfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe 73 (772)
+|++||..|+|||||+|+|-+. -|++.|+ |++-.-| + ....+++.||=|+-+.--..+-..|
T Consensus 180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDp------T~h~a~L---p-sg~~vlltDTvGFisdLP~~LvaAF- 248 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDP------TLHSAHL---P-SGNFVLLTDTVGFISDLPIQLVAAF- 248 (410)
T ss_pred eEEEEeecCccHHHHHHHHHhhhcCccchhheeccc------hhhhccC---C-CCcEEEEeechhhhhhCcHHHHHHH-
Confidence 4899999999999999999985 4566653 2222221 1 3467899999999843321111122
Q ss_pred HHHHHHHhhcccEEEEeeccccccccccC--CHHHHHHHHHHHHhhcCCCCccEEE----EEeCCCCCChhchHHHHHHH
Q 004126 74 KQSALFALAVSDIVLINMWCHDIGREQAA--NKPLLKTVFQVMMRLFSPRKTTLMF----VIRDKTRTPLENLEPVLRED 147 (772)
Q Consensus 74 ~k~alfALa~sDvliiNl~~~dig~~~~~--n~~lLktv~evnl~lf~~~k~~llf----VIrd~d~t~~e~l~~~l~~~ 147 (772)
+..|.-.+.||++|-.. |+...... ....|+++.+ +=- +.-|++- |-|++|..+.+- +. ..
T Consensus 249 -~ATLeeVaeadlllHvv---DiShP~ae~q~e~Vl~vL~~----igv-~~~pkl~~mieVdnkiD~e~~~~-e~--E~- 315 (410)
T KOG0410|consen 249 -QATLEEVAEADLLLHVV---DISHPNAEEQRETVLHVLNQ----IGV-PSEPKLQNMIEVDNKIDYEEDEV-EE--EK- 315 (410)
T ss_pred -HHHHHHHhhcceEEEEe---ecCCccHHHHHHHHHHHHHh----cCC-CcHHHHhHHHhhccccccccccC-cc--cc-
Confidence 45666688999886654 44432221 2223444433 211 1222222 334444322111 00 00
Q ss_pred HHHHhhcCCCCCCccCCCchhhHHHHHh
Q 004126 148 IQKIWDSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 148 l~~iw~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
...+.+|++++.+++++.+.+-.
T Consensus 316 -----n~~v~isaltgdgl~el~~a~~~ 338 (410)
T KOG0410|consen 316 -----NLDVGISALTGDGLEELLKAEET 338 (410)
T ss_pred -----CCccccccccCccHHHHHHHHHH
Confidence 11456788889999998876543
No 282
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.16 E-value=0.0011 Score=65.49 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=54.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCC----CeeeecCCCCC----C----CCcccceeeEec----------------------
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT----NFREMDAFKGR----S----QTTKGIWMARCA---------------------- 46 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt----kfsims~~~~r----~----QTTrGiw~~i~~---------------------- 46 (772)
++.|+|..++|||||++++++. ++.++-...|. + +...+++ .+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~-~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEII-EMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEE-EeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 4679999999999999999864 33332211110 0 1111111 1111
Q ss_pred ---CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeecc
Q 004126 47 ---GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWC 93 (772)
Q Consensus 47 ---~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~ 93 (772)
....+.||+||||++.+..- .+.++.+.++-+....|.++..+..
T Consensus 81 ~~~~~~~d~I~IEt~G~~~p~~~--~~~~~~~~~~~~~~~~d~vv~vvDa 128 (158)
T cd03112 81 DAGKIAFDRIVIETTGLADPGPV--AQTFFMDEELAERYLLDGVITLVDA 128 (158)
T ss_pred HhccCCCCEEEEECCCcCCHHHH--HHHHhhchhhhcceeeccEEEEEEh
Confidence 12478999999999955432 2455556667777788888777654
No 283
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.09 E-value=0.00089 Score=72.56 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=44.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCe-----eeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNF-----REMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQS 76 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkf-----sims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~ 76 (772)
|=|||.||+|||+|+|++-.... +.+. ++|--||-+--=+.-.....+-++||||+-.+ +-.+ .+-+.++
T Consensus 146 vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG---~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P-~I~~-~e~~lKL 220 (335)
T KOG2485|consen 146 VMVVGVPNVGKSSLINALRNVHLRKKKAARVG---AEPGVTRRVSERIRISHRPPVYLIDTPGILVP-SIVD-VEDGLKL 220 (335)
T ss_pred EEEEcCCCCChHHHHHHHHHHHhhhccceecc---CCCCceeeehhheEeccCCceEEecCCCcCCC-CCCC-HHHhhhh
Confidence 45899999999999999875333 3222 34555554432222234567889999999955 5444 3444443
No 284
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.07 E-value=0.0032 Score=64.53 Aligned_cols=53 Identities=17% Similarity=0.146 Sum_probs=35.2
Q ss_pred CccEEEEEeCCCCCCh--hchHHHHHHHHHHH--hhcCCCCCCccCCCchhhHHHHHh
Q 004126 122 KTTLMFVIRDKTRTPL--ENLEPVLREDIQKI--WDSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 122 k~~llfVIrd~d~t~~--e~l~~~l~~~l~~i--w~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
..+.++|+||+|..+. ..+. .+.+.+..+ +..+...|+..+.+++++|+....
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~-~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~ 204 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVE-KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEG 204 (207)
T ss_pred hhCCEEEEEHHHccccchhhHH-HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999998643 2222 233334333 245777899999999999987643
No 285
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.05 E-value=0.00096 Score=65.23 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=78.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
++++|.||||||||.|.++--++.. ----|+|.-|-..+...-.|.+.|.||-. +-| ...|+ =-
T Consensus 23 l~lvGLq~sGKtt~Vn~ia~g~~~e------dmiptvGfnmrk~tkgnvtiklwD~gGq~-rfr----smWer-----yc 86 (186)
T KOG0075|consen 23 LSLVGLQNSGKTTLVNVIARGQYLE------DMIPTVGFNMRKVTKGNVTIKLWDLGGQP-RFR----SMWER-----YC 86 (186)
T ss_pred EEEEeeccCCcceEEEEEeeccchh------hhcccccceeEEeccCceEEEEEecCCCc-cHH----HHHHH-----Hh
Confidence 6899999999999999998766652 12247888888888888899999999864 212 12222 12
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC--CCccEEEEEeCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRT 135 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~--~k~~llfVIrd~d~t 135 (772)
..+|++++.+...|.+...++.. .|+.+.. .+ .+.|+++.-||.|..
T Consensus 87 R~v~aivY~VDaad~~k~~~sr~-EL~~LL~------k~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 87 RGVSAIVYVVDAADPDKLEASRS-ELHDLLD------KPSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred hcCcEEEEEeecCCcccchhhHH-HHHHHhc------chhhcCCcEEEecccccCc
Confidence 46788988888888776666543 3433322 12 578999999999764
No 286
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0034 Score=70.45 Aligned_cols=166 Identities=12% Similarity=0.126 Sum_probs=92.3
Q ss_pred EEEeCCCCCChHHHHhHHhCC------------------------Ceee-ecCCCCCCCCcccceeeEec----CCCCcE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT------------------------NFRE-MDAFKGRSQTTKGIWMARCA----GIEPCT 52 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt------------------------kfsi-ms~~~~r~QTTrGiw~~i~~----~~~~qi 52 (772)
+.++|...+|||||+-+|+=. +|+. ||.. +--=-||+-+-+.. ++...+
T Consensus 10 l~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~t--keERerGvTi~~~~~~fet~k~~~ 87 (428)
T COG5256 10 LVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKT--KEERERGVTIDVAHSKFETDKYNF 87 (428)
T ss_pred EEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCC--hhHHhcceEEEEEEEEeecCCceE
Confidence 568999999999999999821 2332 2311 11112344444333 245678
Q ss_pred EEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccc----cc-cccCCHHHHHHHHHHHHhhcCCCCccEEE
Q 004126 53 LIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDI----GR-EQAANKPLLKTVFQVMMRLFSPRKTTLMF 127 (772)
Q Consensus 53 l~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~di----g~-~~~~n~~lLktv~evnl~lf~~~k~~llf 127 (772)
=++|+|| | .+|- +-..-..+.+|+-|+.+.+.+- |- ..|+...-+....- . --..+++
T Consensus 88 tIiDaPG-H--------rdFv-knmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t------l-Gi~~lIV 150 (428)
T COG5256 88 TIIDAPG-H--------RDFV-KNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART------L-GIKQLIV 150 (428)
T ss_pred EEeeCCc-h--------HHHH-HHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh------c-CCceEEE
Confidence 9999999 6 2232 2233444667787777776322 10 01221111111100 0 3567999
Q ss_pred EEeCCCCCC--hh---chHHHHHHHHHHH-hhc----CCCCCCccCCCchhhHHHHHhhcCCCccchhHHHHHHH
Q 004126 128 VIRDKTRTP--LE---NLEPVLREDIQKI-WDS----VPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVA 192 (772)
Q Consensus 128 VIrd~d~t~--~e---~l~~~l~~~l~~i-w~~----i~kpsa~~~~~l~dlf~~~~~~Lph~~~~~~~F~~~v~ 192 (772)
+|||.|..+ .+ ++...+...+..+ |.. .+|.|+++|.++.+-= ...|+|. -+-|.+.+.
T Consensus 151 avNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s----~~~pWY~--GpTLleaLd 219 (428)
T COG5256 151 AVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS----ENMPWYK--GPTLLEALD 219 (428)
T ss_pred EEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC----cCCcCcc--CChHHHHHh
Confidence 999999874 33 3334444433333 542 4688999999987664 3567764 445555554
No 287
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0033 Score=72.41 Aligned_cols=150 Identities=18% Similarity=0.118 Sum_probs=96.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC-CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG-IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~-~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
+|+|+|.=-=||+|||-+|=+++++-.- .+--|.||=.=..+. ....|-|+||||=- .|.-.- --
T Consensus 155 VVTiMGHVDHGKTTLLD~lRks~VAA~E----~GGITQhIGAF~V~~p~G~~iTFLDTPGHa---------AF~aMR-aR 220 (683)
T KOG1145|consen 155 VVTIMGHVDHGKTTLLDALRKSSVAAGE----AGGITQHIGAFTVTLPSGKSITFLDTPGHA---------AFSAMR-AR 220 (683)
T ss_pred eEEEeecccCChhhHHHHHhhCceehhh----cCCccceeceEEEecCCCCEEEEecCCcHH---------HHHHHH-hc
Confidence 5899999999999999999999998543 344566553333332 45789999999953 121100 11
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCC--CChhchHHHHH-HHHH--HH--h
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR--TPLENLEPVLR-EDIQ--KI--W 152 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~--t~~e~l~~~l~-~~l~--~i--w 152 (772)
....+||+++.+-..|--..| ...-++..+. ...|++++|||+|. ++.+...+.|. ..+. .+ -
T Consensus 221 GA~vtDIvVLVVAadDGVmpQ--T~EaIkhAk~--------A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGd 290 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDGVMPQ--TLEAIKHAKS--------ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGD 290 (683)
T ss_pred cCccccEEEEEEEccCCccHh--HHHHHHHHHh--------cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCc
Confidence 235899998877543322111 1223444444 68999999999985 35555544332 2221 12 1
Q ss_pred hcCCCCCCccCCCchhhHHHHH
Q 004126 153 DSVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 153 ~~i~kpsa~~~~~l~dlf~~~~ 174 (772)
-.++++|++++.+++.|-+...
T Consensus 291 VQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 291 VQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred eeEEEeecccCCChHHHHHHHH
Confidence 2467999999999999987653
No 288
>PLN00023 GTP-binding protein; Provisional
Probab=97.03 E-value=0.0042 Score=68.52 Aligned_cols=116 Identities=15% Similarity=0.052 Sum_probs=65.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEe--cC---------------CCCcEEEEecCCCCCcC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC--AG---------------IEPCTLIMDLEGTDGRE 64 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~--~~---------------~~~qil~lDteG~~s~e 64 (772)
|.|+|..+||||||++++.+..|.. ..+.|-|.-..+. .. ....+-+.||.|-.
T Consensus 24 IVLLGdsGVGKTSLI~rf~~g~F~~------~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE--- 94 (334)
T PLN00023 24 VLVVGDSGVGKSSLVHLIVKGSSIA------RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE--- 94 (334)
T ss_pred EEEECCCCCcHHHHHHHHhcCCccc------ccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh---
Confidence 6899999999999999999988852 3444544422111 11 12347799999864
Q ss_pred CCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhh-cC---------CCCccEEEEEeCCCC
Q 004126 65 RGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRL-FS---------PRKTTLMFVIRDKTR 134 (772)
Q Consensus 65 r~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~l-f~---------~~k~~llfVIrd~d~ 134 (772)
+. . ...-.-+..+|++|+.....+. . +-..+-+.+.++.... |. ....|+++|-||.|+
T Consensus 95 rf------r-sL~~~yyr~AdgiILVyDITdr---~-SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 95 RY------K-DCRSLFYSQINGVIFVHDLSQR---R-TKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred hh------h-hhhHHhccCCCEEEEEEeCCCH---H-HHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 11 1 1222236789999775543221 1 1111212222221110 11 024789999999998
Q ss_pred CCh
Q 004126 135 TPL 137 (772)
Q Consensus 135 t~~ 137 (772)
.+.
T Consensus 164 ~~~ 166 (334)
T PLN00023 164 APK 166 (334)
T ss_pred ccc
Confidence 654
No 289
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=96.96 E-value=0.00029 Score=81.94 Aligned_cols=57 Identities=33% Similarity=0.444 Sum_probs=48.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC--CeeeecCCCCCCCCcccceeeEecCCC---CcEEEEecCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT--NFREMDAFKGRSQTTKGIWMARCAGIE---PCTLIMDLEGT 60 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt--kfsims~~~~r~QTTrGiw~~i~~~~~---~qil~lDteG~ 60 (772)
+|+|+|+.++|||.+||.+.|. .|++-+. ..-||+|+|||..+.++ ..++++||||.
T Consensus 34 Vv~i~g~~~~gksfiln~la~~~~gf~~~s~---~~~~~~~~w~w~~p~~k~~~~~l~Lld~eg~ 95 (552)
T KOG2037|consen 34 VVAIVGLYRTGKSFILNQLAGKRIGFSVAST---DKPVTKGIWMWCVPHGKSFLLNLVLLDTEGL 95 (552)
T ss_pred EEEEEEEEcCCCceehhhhHhhhcCCCcccc---cccceeeEEEEEeecCCccchhhhhhccccc
Confidence 4899999999999999999995 4665553 35599999999999754 68899999998
No 290
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=96.95 E-value=0.0048 Score=63.32 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=90.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|.+++|||.|..+..+..|.-- ..-|.-..+.-... .....+-|+||.|.+ + -..|+ ..
T Consensus 6 vvvlG~~gVGKSal~~qf~~~~f~~~-----y~ptied~y~k~~~v~~~~~~l~ilDt~g~~--~-----~~~~~---~~ 70 (196)
T KOG0395|consen 6 VVVLGAGGVGKSALTIQFLTGRFVED-----YDPTIEDSYRKELTVDGEVCMLEILDTAGQE--E-----FSAMR---DL 70 (196)
T ss_pred EEEECCCCCCcchheeeecccccccc-----cCCCccccceEEEEECCEEEEEEEEcCCCcc--c-----ChHHH---HH
Confidence 78999999999999999999999742 22233222222222 344677899999943 1 12222 23
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh-cCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD-SVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~-~i~kp 158 (772)
.+..+|-.++.--..+.. ....++.+.+.-++.-+....|+++|.||.|+...-.+...-.+.+...|. .....
T Consensus 71 ~~~~~~gF~lVysitd~~-----SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~ 145 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRS-----SFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIET 145 (196)
T ss_pred hhccCcEEEEEEECCCHH-----HHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEe
Confidence 455667765543333322 233344444433444444678999999999976533333221233344564 23456
Q ss_pred CCccCCCchhhHHHHHhh
Q 004126 159 QAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~ 176 (772)
|+..+.++++.|...+..
T Consensus 146 Sak~~~~v~~~F~~L~r~ 163 (196)
T KOG0395|consen 146 SAKLNYNVDEVFYELVRE 163 (196)
T ss_pred eccCCcCHHHHHHHHHHH
Confidence 777777888887765543
No 291
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.93 E-value=0.007 Score=61.31 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=93.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeee----cCC--CCCCCCcccceeeEecCCC-CcEEEEecCCCCCcCCCCCccHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREM----DAF--KGRSQTTKGIWMARCAGIE-PCTLIMDLEGTDGRERGEDDTAFEK 74 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsim----s~~--~~r~QTTrGiw~~i~~~~~-~qil~lDteG~~s~er~e~~~~fe~ 74 (772)
|.|+|++++||+|.+-++.-...-++ +.. .++.+||-..=.|.+...+ .-+=++||||=. | =+||.
T Consensus 13 Ivv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~---R----F~fm~ 85 (187)
T COG2229 13 IVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE---R----FKFMW 85 (187)
T ss_pred EEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH---H----HHHHH
Confidence 67999999999999999988664222 111 2345788777777776655 788899999953 3 35666
Q ss_pred HHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCC-ccEEEEEeCCCCC---ChhchHHHHHHHHHH
Q 004126 75 QSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK-TTLMFVIRDKTRT---PLENLEPVLREDIQK 150 (772)
Q Consensus 75 k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k-~~llfVIrd~d~t---~~e~l~~~l~~~l~~ 150 (772)
..... .++=+|+.+.....-. . ....++. .|..++ .|+++++||.|+- |.|.+.+.+...+
T Consensus 86 ~~l~~---ga~gaivlVDss~~~~-~-~a~~ii~--------f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~-- 150 (187)
T COG2229 86 EILSR---GAVGAIVLVDSSRPIT-F-HAEEIID--------FLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL-- 150 (187)
T ss_pred HHHhC---CcceEEEEEecCCCcc-h-HHHHHHH--------HHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc--
Confidence 55443 3555666565422110 0 1122222 222244 9999999999863 5666655544332
Q ss_pred HhhcCCCCCCccCCCchhhHHHHHh
Q 004126 151 IWDSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 151 iw~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
+--.+++.++-++.+..+-++....
T Consensus 151 ~~~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 151 LSVPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred CCCceeeeecccchhHHHHHHHHHh
Confidence 1223556667777777776665443
No 292
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.89 E-value=0.0073 Score=59.12 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=18.6
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
.+.++|+++|||||++..|-.
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998875
No 293
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=96.77 E-value=0.0041 Score=67.30 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=63.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCC-----CCCCCcccceee--Eec--CCCCcEEEEecCCCCCcCCCCC----
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFK-----GRSQTTKGIWMA--RCA--GIEPCTLIMDLEGTDGRERGED---- 68 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~-----~r~QTTrGiw~~--i~~--~~~~qil~lDteG~~s~er~e~---- 68 (772)
+-++|..|+||||++|.||++.+-..+... +...|++ +-.. ... +..-.+-|+||||+...-..+.
T Consensus 7 ImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~ 85 (281)
T PF00735_consen 7 IMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLE-IEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEP 85 (281)
T ss_dssp EEEEECTTSSHHHHHHHHHTSS---------S------SCEE-EEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhcccccccccccccccccccccc-eeeEEEEeccCCcceEEEEEeCCCccccccchhhhHH
Confidence 458999999999999999998776553100 1111211 1111 111 1124678999999863222111
Q ss_pred -----ccHHHHHHHHHH------hh--cccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 69 -----DTAFEKQSALFA------LA--VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 69 -----~~~fe~k~alfA------La--~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
+..|+.-+.... .. -.|++|+-+....-|..+ .-+..+.++ ..+++++=||-|.|.-
T Consensus 86 I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~----~Di~~mk~L------s~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 86 IVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKP----LDIEFMKRL------SKRVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-H----HHHHHHHHH------TTTSEEEEEESTGGGS
T ss_pred HHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchH----HHHHHHHHh------cccccEEeEEeccccc
Confidence 011111111110 11 257777766532222111 122333321 1478999999999754
Q ss_pred Chhch---HHHHHHHHH
Q 004126 136 PLENL---EPVLREDIQ 149 (772)
Q Consensus 136 ~~e~l---~~~l~~~l~ 149 (772)
..+++ +..+.+++.
T Consensus 156 t~~el~~~k~~i~~~l~ 172 (281)
T PF00735_consen 156 TPEELQAFKQRIREDLE 172 (281)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34433 355555553
No 294
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.74 E-value=0.0092 Score=68.14 Aligned_cols=29 Identities=21% Similarity=0.048 Sum_probs=25.9
Q ss_pred CEEEeCCCCCChHHHHhHHh------CCCeeeecC
Q 004126 1 MCHIFFVIMTGKSTLLNHLF------GTNFREMDA 29 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf------Gtkfsims~ 29 (772)
+|.++|+|||||||+...|- |.++.+++.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 47899999999999999997 888888875
No 295
>PRK01889 GTPase RsgA; Reviewed
Probab=96.72 E-value=0.0011 Score=73.92 Aligned_cols=60 Identities=28% Similarity=0.318 Sum_probs=38.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecC-----CCCCCCCcccceeeEecCCCCcEEEEecCCCCCcC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDA-----FKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRE 64 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~-----~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~e 64 (772)
.++++|.+|+|||||+|+|.|..-..... ..++ .||+..-++..+. ...++||||+....
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~-~tt~~~~l~~l~~---~~~l~DtpG~~~~~ 261 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGR-HTTTHRELHPLPS---GGLLIDTPGMRELQ 261 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCc-chhhhccEEEecC---CCeecCCCchhhhc
Confidence 37899999999999999999853221111 1122 3555555554432 23567999996433
No 296
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.0071 Score=70.54 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=39.1
Q ss_pred CEEEeCCCCCChHHHHhHHhC--------CCeeeecCCCCCCC-----CcccceeeEec---------------CCCCcE
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG--------TNFREMDAFKGRSQ-----TTKGIWMARCA---------------GIEPCT 52 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG--------tkfsims~~~~r~Q-----TTrGiw~~i~~---------------~~~~qi 52 (772)
+++|+|+.|+||||++.+|.+ .++.+++.-.-|.. -+.+..+++.. ..+.++
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~DL 431 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKL 431 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCCE
Confidence 478999999999999999874 45666663211110 01122222211 135789
Q ss_pred EEEecCCCCC
Q 004126 53 LIMDLEGTDG 62 (772)
Q Consensus 53 l~lDteG~~s 62 (772)
||+||+|...
T Consensus 432 VLIDTaG~s~ 441 (559)
T PRK12727 432 VLIDTAGMGQ 441 (559)
T ss_pred EEecCCCcch
Confidence 9999999973
No 297
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.51 E-value=0.016 Score=72.54 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=61.8
Q ss_pred CChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC------------------CCcEEEEecCCCCCcCCCCCccH
Q 004126 10 TGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI------------------EPCTLIMDLEGTDGRERGEDDTA 71 (772)
Q Consensus 10 sGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~------------------~~qil~lDteG~~s~er~e~~~~ 71 (772)
++|+|||-+|=||+++--- .+-=|.+|=....+.+ -+.+.|+||||-. .
T Consensus 472 ~~KTtLLD~iR~t~v~~~E----aGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe---------~ 538 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKE----AGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE---------A 538 (1049)
T ss_pred cccccHHHHHhCCCccccc----CCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH---------H
Confidence 4699999999999985322 3445555543333221 1348999999932 2
Q ss_pred HHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 72 FEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 72 fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
|. ......+..+|++++.+...+ |- .......++.+.. .+.|+++|+||+|..+
T Consensus 539 F~-~lr~~g~~~aDivlLVVDa~~-Gi-~~qT~e~I~~lk~--------~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 539 FT-SLRKRGGSLADLAVLVVDINE-GF-KPQTIEAINILRQ--------YKTPFVVAANKIDLIP 592 (1049)
T ss_pred HH-HHHHhhcccCCEEEEEEECcc-cC-CHhHHHHHHHHHH--------cCCCEEEEEECCCCcc
Confidence 21 122334678999988776532 21 1122222333322 4678999999999864
No 298
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.0079 Score=60.50 Aligned_cols=160 Identities=15% Similarity=0.109 Sum_probs=106.0
Q ss_pred EEEeCCCCCChHHHHhHH---hCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHL---FGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~L---fGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~al 78 (772)
|-|+|+-|+||+|+|-++ |-..+..+++ .+-++|-|.-.|........+.|.|.-|=. ..+.+--
T Consensus 20 vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~--~ki~~tvgLnig~i~v~~~~l~fwdlgGQe----------~lrSlw~ 87 (197)
T KOG0076|consen 20 VLILGLDNAGKTTFLEALKTDFSKAYGGLNP--SKITPTVGLNIGTIEVCNAPLSFWDLGGQE----------SLRSLWK 87 (197)
T ss_pred heeeccccCCchhHHHHHHHHHHhhhcCCCH--HHeecccceeecceeeccceeEEEEcCChH----------HHHHHHH
Confidence 569999999999999776 3345556664 588999999999888888899999965532 2333333
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh---chHHHHHHHHHHH---h
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE---NLEPVLREDIQKI---W 152 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e---~l~~~l~~~l~~i---w 152 (772)
-=...++.+|+.+...+-.|.+.+ ++.|+..+.-=.-...|+++..|+-|..+.. .+...+.. .+.+ =
T Consensus 88 ~yY~~~H~ii~viDa~~~eR~~~~-----~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~~~rd 161 (197)
T KOG0076|consen 88 KYYWLAHGIIYVIDATDRERFEES-----KTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL-AELIPRRD 161 (197)
T ss_pred HHHHHhceeEEeecCCCHHHHHHH-----HHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhcCCcc
Confidence 335678899888876554444432 3333321111011478999999999876443 33333332 3333 1
Q ss_pred hcCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 153 DSVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 153 ~~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
.-+.+.|++.+.++.+-..-.+..+|.
T Consensus 162 ~~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 162 NPFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred CccccchhhhcccHHHHHHHHHHHHhh
Confidence 235678999999999888877777764
No 299
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=96.49 E-value=0.023 Score=59.98 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=67.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|-++|+.+||||+..+.+|+.--. -+.. .=..|++--.--+.....-.+=+.|+||.+..-.. +.......-+
T Consensus 2 iLLmG~~~SGKTSi~~vIF~~~~p-~dT~-~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~-----~~~~~~~~if 74 (232)
T PF04670_consen 2 ILLMGPRRSGKTSIRSVIFHKYSP-RDTL-RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN-----YFNSQREEIF 74 (232)
T ss_dssp EEEEESTTSSHHHHHHHHHS---G-GGGG-G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT-----THTCCHHHHH
T ss_pred EEEEcCCCCChhhHHHHHHcCCCc-hhcc-ccCCcCCceEEEEecCCCcEEEEEEcCCccccccc-----cccccHHHHH
Confidence 568999999999999999984321 1100 01223332222222234458899999999844321 1111122335
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHH
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 145 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~ 145 (772)
+.+++||+.+...+- .+. .+..-+...++ ++.-++ ++..+.+.|+|+|..+.+.-.....
T Consensus 75 ~~v~~LIyV~D~qs~-~~~-~~l~~~~~~i~-~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~ 134 (232)
T PF04670_consen 75 SNVGVLIYVFDAQSD-DYD-EDLAYLSDCIE-ALRQYS-PNIKVFVFIHKMDLLSEDEREEIFR 134 (232)
T ss_dssp CTESEEEEEEETT-S-TCH-HHHHHHHHHHH-HHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHH
T ss_pred hccCEEEEEEEcccc-cHH-HHHHHHHHHHH-HHHHhC-CCCeEEEEEeecccCCHHHHHHHHH
Confidence 789999887765311 112 22223333333 122222 4677889999999876655443333
No 300
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.011 Score=68.34 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=101.3
Q ss_pred EEeCCCCCChHHHHhHHhCC---------CeeeecCC--------CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCC
Q 004126 3 HIFFVIMTGKSTLLNHLFGT---------NFREMDAF--------KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRER 65 (772)
Q Consensus 3 aIvG~~ssGKSTLLN~LfGt---------kfsims~~--------~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er 65 (772)
+||-.=-=|||||.-.|+-. +=++||.. +=++|||.-.|.. +...-+-++||||=- -=+
T Consensus 64 sIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~---~~~ylLNLIDTPGHv-DFs 139 (650)
T KOG0462|consen 64 SIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD---GQSYLLNLIDTPGHV-DFS 139 (650)
T ss_pred EEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc---CCceEEEeecCCCcc-ccc
Confidence 45555567999999998741 11222211 1146788777765 344667799999954 222
Q ss_pred CCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCC--CChhchHHH
Q 004126 66 GEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR--TPLENLEPV 143 (772)
Q Consensus 66 ~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~--t~~e~l~~~ 143 (772)
+ +. --+|+.+|=+|+.+...+ | ..-+|++...+-+ ...-.++-||||+|+ +..+.++..
T Consensus 140 ~----EV-----sRslaac~G~lLvVDA~q-----G---vqAQT~anf~lAf--e~~L~iIpVlNKIDlp~adpe~V~~q 200 (650)
T KOG0462|consen 140 G----EV-----SRSLAACDGALLVVDASQ-----G---VQAQTVANFYLAF--EAGLAIIPVLNKIDLPSADPERVENQ 200 (650)
T ss_pred c----ee-----hehhhhcCceEEEEEcCc-----C---chHHHHHHHHHHH--HcCCeEEEeeeccCCCCCCHHHHHHH
Confidence 2 22 245788888877775421 1 1225665433222 145668899999997 355666655
Q ss_pred HHHHHHHHhhcCCCCCCccCCCchhhHHHHHhhcCCCccchh
Q 004126 144 LREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEE 185 (772)
Q Consensus 144 l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~~~Lph~~~~~~ 185 (772)
+.+-...--+++...|+.+|.+++++++.++...|-..-.++
T Consensus 201 ~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d 242 (650)
T KOG0462|consen 201 LFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRD 242 (650)
T ss_pred HHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCCCC
Confidence 544333224567788999999999999999999997765533
No 301
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.43 E-value=0.0053 Score=65.62 Aligned_cols=21 Identities=43% Similarity=0.399 Sum_probs=20.0
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
|++|+|+.++||||||+.|.|
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999998
No 302
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.025 Score=64.11 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=107.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.-.|.==-||+||+-.+.|..-+..-+. ++.+||-++=++-.+.++..+-|+|+||-- +| -+..+.++
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~Ee-kKRG~TiDlg~~y~~~~d~~~~fIDvpgh~---------~~-i~~miag~ 71 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEE-KKRGITIDLGFYYRKLEDGVMGFIDVPGHP---------DF-ISNLLAGL 71 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhh-hhcCceEeeeeEeccCCCCceEEeeCCCcH---------HH-HHHHHhhh
Confidence 34456666799999999999988887664 788999999888888888999999999863 23 34667788
Q ss_pred hcccEEEEeeccc-cccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-h--hcCCC
Q 004126 82 AVSDIVLINMWCH-DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-W--DSVPK 157 (772)
Q Consensus 82 a~sDvliiNl~~~-dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w--~~i~k 157 (772)
..+|..++.+.+. .+--..+ .++ ..+.+|+ .+..++|+.+.|.++.+.+++.+.+-+... | ..|.+
T Consensus 72 ~~~d~alLvV~~deGl~~qtg------EhL--~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~ 141 (447)
T COG3276 72 GGIDYALLVVAADEGLMAQTG------EHL--LILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFK 141 (447)
T ss_pred cCCceEEEEEeCccCcchhhH------HHH--HHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcccccccccc
Confidence 8888887777652 1221122 222 2244444 466789999999998776664444333222 3 35678
Q ss_pred CCCccCCCchhhHHHHHhhc
Q 004126 158 PQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~L 177 (772)
.|+..+.+++++-+-+...+
T Consensus 142 ~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 142 TSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccccCCCHHHHHHHHHHhh
Confidence 89988998888876554443
No 303
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.025 Score=67.16 Aligned_cols=150 Identities=21% Similarity=0.319 Sum_probs=91.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC------------------CCCcEEEEecCCCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG------------------IEPCTLIMDLEGTDG 62 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~------------------~~~qil~lDteG~~s 62 (772)
+|+|+|.--+||+-||-.|=||+++-..+ +-.|..|=....+. .-+-++++||||-.
T Consensus 477 IcCilGHVDTGKTKlld~ir~tNVqegea----ggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE- 551 (1064)
T KOG1144|consen 477 ICCILGHVDTGKTKLLDKIRGTNVQEGEA----GGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE- 551 (1064)
T ss_pred eEEEeecccccchHHHHHhhccccccccc----cceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch-
Confidence 47899999999999999999999986543 22333332222221 22679999999932
Q ss_pred cCCCCCccHHHHHHHHHHhhcccEEEEeecc-ccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCC------C
Q 004126 63 RERGEDDTAFEKQSALFALAVSDIVLINMWC-HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR------T 135 (772)
Q Consensus 63 ~er~e~~~~fe~k~alfALa~sDvliiNl~~-~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~------t 135 (772)
.|-| +-.+..+.||+.|+.+.. |.+ ++ ....-++.+.. +++|+++++|++|. +
T Consensus 552 --------sFtn-lRsrgsslC~~aIlvvdImhGl--ep-qtiESi~lLR~--------rktpFivALNKiDRLYgwk~~ 611 (1064)
T KOG1144|consen 552 --------SFTN-LRSRGSSLCDLAILVVDIMHGL--EP-QTIESINLLRM--------RKTPFIVALNKIDRLYGWKSC 611 (1064)
T ss_pred --------hhhh-hhhccccccceEEEEeehhccC--Cc-chhHHHHHHHh--------cCCCeEEeehhhhhhcccccC
Confidence 2222 112334678887776654 332 22 22222333333 89999999999974 3
Q ss_pred ChhchHHH-----------HHHHHHHH---h-------------------hcCCCCCCccCCCchhhHHHHHh
Q 004126 136 PLENLEPV-----------LREDIQKI---W-------------------DSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 136 ~~e~l~~~-----------l~~~l~~i---w-------------------~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
|..-+..+ +...++.| + -+|+|.|++.|.++-||+-+++.
T Consensus 612 p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ 684 (1064)
T KOG1144|consen 612 PNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQ 684 (1064)
T ss_pred CCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHH
Confidence 44333222 22222222 1 24778899999999999877653
No 304
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.32 E-value=0.0062 Score=66.86 Aligned_cols=81 Identities=20% Similarity=0.126 Sum_probs=53.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC-----------------CCcEEEEecCCCC-C-
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI-----------------EPCTLIMDLEGTD-G- 62 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~-----------------~~qil~lDteG~~-s- 62 (772)
+.|||.|||||||++|+|-..+...- .-|=||-..--|....+ ..++=++|+-|+- |
T Consensus 23 iGIVGlPNvGKST~fnalT~~~a~~~----NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 23 IGIVGLPNVGKSTFFNALTKSKAGAA----NFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred eeEeeCCCCchHHHHHHHhcCCCCcc----CCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 57999999999999999998776622 34566665555555432 2588899998875 1
Q ss_pred -cCCCCCccHHHHHHHHHHhhcccEEEEeec
Q 004126 63 -RERGEDDTAFEKQSALFALAVSDIVLINMW 92 (772)
Q Consensus 63 -~er~e~~~~fe~k~alfALa~sDvliiNl~ 92 (772)
..+|.. +.|... +..+|-++-.+-
T Consensus 99 s~G~GLG-N~FLs~-----iR~vDaifhVVr 123 (391)
T KOG1491|consen 99 SAGEGLG-NKFLSH-----IRHVDAIFHVVR 123 (391)
T ss_pred ccCcCch-HHHHHh-----hhhccceeEEEE
Confidence 223322 566443 566776654443
No 305
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.24 E-value=0.0026 Score=66.74 Aligned_cols=21 Identities=48% Similarity=0.381 Sum_probs=19.9
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
||+|+|+-+||||||||.|=|
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999877
No 306
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.03 Score=56.03 Aligned_cols=19 Identities=26% Similarity=0.090 Sum_probs=17.2
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
+.|-|+|+||||||+-.+.
T Consensus 8 i~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred EEEeCCCCccHHHHHHHHH
Confidence 5789999999999998877
No 307
>PF10220 DUF2146: Uncharacterized conserved protein (DUF2146); InterPro: IPR019354 Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes []. NMD is a surveillance mechanism that detects and degrades mRNAs containing premature translation termination codons.
Probab=96.18 E-value=1.4 Score=54.85 Aligned_cols=190 Identities=19% Similarity=0.209 Sum_probs=102.0
Q ss_pred CEEEeCCCC--CChHHHHhHHhCCCeeeecCCCCC-CCCcccceeeEecCCCCcEEEEecCCCCCcCCC-----------
Q 004126 1 MCHIFFVIM--TGKSTLLNHLFGTNFREMDAFKGR-SQTTKGIWMARCAGIEPCTLIMDLEGTDGRERG----------- 66 (772)
Q Consensus 1 ~VaIvG~~s--sGKSTLLN~LfGtkfsims~~~~r-~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~----------- 66 (772)
+|.|||+.+ .||++++|.+++.++--......- ...|-+ +-+ .-..+..+|++|+.|+.....-
T Consensus 13 VVGViGKS~~~~~k~~~iN~~~~~nvF~~~~~~~~~~~~~~~-Ie~-Yy~~e~riLyLhl~si~D~~~L~~l~~~l~~~~ 90 (895)
T PF10220_consen 13 VVGVIGKSSLGKGKSSLINKLLDFNVFPSQTSEPDESGNTCQ-IEA-YYDTEERILYLHLQSILDTAILAMLCKSLSSKL 90 (895)
T ss_pred EEEEEeCCCcccchhhhHHHHHhcCCCCCcccccccCCCCce-EEE-EEcCCCCEEEEEccCcCCHHHHHHHHHHHhccC
Confidence 588999998 677999999998765433221111 111222 222 3345789999999998633310
Q ss_pred --CCccHH-------HHHHHHHHhhcccEEEEee--ccccccccccCCHHHHH---HHHHH-HHh-----hcC-------
Q 004126 67 --EDDTAF-------EKQSALFALAVSDIVLINM--WCHDIGREQAANKPLLK---TVFQV-MMR-----LFS------- 119 (772)
Q Consensus 67 --e~~~~f-------e~k~alfALa~sDvliiNl--~~~dig~~~~~n~~lLk---tv~ev-nl~-----lf~------- 119 (772)
.+...| .-+..+|.+.+++|||+.= |..|+. =..+++ .+.+. .++ |+.
T Consensus 91 ~~~df~~~~~~~E~q~lr~LlFLFsVCHIIIlV~p~~~FD~~-----y~rlFr~l~~lRqk~l~p~L~~~L~~~~~~~~w 165 (895)
T PF10220_consen 91 SPSDFHSFWKDMESQYLRMLLFLFSVCHIIILVHPTSTFDLN-----YLRLFRALDMLRQKKLLPFLPDLLKDTNLPKDW 165 (895)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhceEEEEEccCceecHH-----HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhh
Confidence 000111 1267899999999997742 223332 112222 22221 111 111
Q ss_pred ----C-CCccEEEEEeCCCC------C------ChhchHHHHHHHHHHHhhcCCCCCC-ccCCCchhhHHH-----HHhh
Q 004126 120 ----P-RKTTLMFVIRDKTR------T------PLENLEPVLREDIQKIWDSVPKPQA-HMETPLSEFFNV-----EVVA 176 (772)
Q Consensus 120 ----~-~k~~llfVIrd~d~------t------~~e~l~~~l~~~l~~iw~~i~kpsa-~~~~~l~dlf~~-----~~~~ 176 (772)
+ ..+.++|+....+. . +...|+..+...+-.|.. -.. +.+..-+-||.+ -++.
T Consensus 166 ~~~gRlC~PRlLF~Fe~~~~~~d~~~~k~~k~e~~~kLE~~lEdQIy~iLr----~~rllTn~s~~sLfalP~n~~FV~~ 241 (895)
T PF10220_consen 166 ISNGRLCSPRLLFLFERNPLRPDGNFDKPKKREPIKKLEHNLEDQIYRILR----KYRLLTNSSSNSLFALPANQQFVFV 241 (895)
T ss_pred hhcCCcCCCcEEEEEecCCcccccccccccchHHHHHHHHHHHHHHHHHHH----HcCccccCCCCcceecCCCCceEEe
Confidence 0 24558898877754 1 233444555555545533 122 234444445433 2345
Q ss_pred cCCCccchhHHHHHHHHHHhhhccc
Q 004126 177 LSSFEEKEELFKEQVASLRQRFYHS 201 (772)
Q Consensus 177 Lph~~~~~~~F~~~v~~Lr~~f~~~ 201 (772)
+++.+..++...+-+.-|...+.+.
T Consensus 242 ~~~~~~~~D~l~~~i~~L~~~l~~~ 266 (895)
T PF10220_consen 242 NPPEEVSEDPLLDMIDMLMETLRKN 266 (895)
T ss_pred cCccccCcchHHHHHHHHHHHhhcc
Confidence 6666666677666677666666643
No 308
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.032 Score=65.03 Aligned_cols=148 Identities=15% Similarity=0.215 Sum_probs=86.6
Q ss_pred EEEeCCCCCChHHHHhHHhCC------------------------Cee-eecCCCCCCCCcccceeeEecC----CCCcE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT------------------------NFR-EMDAFKGRSQTTKGIWMARCAG----IEPCT 52 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt------------------------kfs-ims~~~~r~QTTrGiw~~i~~~----~~~qi 52 (772)
..++|.-.+||||||-+|+-- .++ |+++. +----||+-|-+.+. ....+
T Consensus 180 lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT--~eERerGvTm~v~~~~fes~~~~~ 257 (603)
T KOG0458|consen 180 LVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDET--KEERERGVTMDVKTTWFESKSKIV 257 (603)
T ss_pred EEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccc--hhhhhcceeEEeeeEEEecCceeE
Confidence 468999999999999998721 111 23321 122246777766653 45788
Q ss_pred EEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccc----cccc-cccCCHHHHHHHHHHHHhhcCCCCccEEE
Q 004126 53 LIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCH----DIGR-EQAANKPLLKTVFQVMMRLFSPRKTTLMF 127 (772)
Q Consensus 53 l~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~----dig~-~~~~n~~lLktv~evnl~lf~~~k~~llf 127 (772)
.++|+|| | .| | ..-+......+|+-++.+.+. ..|- ..|.-++....+ +.++ ..-++|
T Consensus 258 tliDaPG-h-----kd---F-i~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~ll-----r~Lg--i~qliv 320 (603)
T KOG0458|consen 258 TLIDAPG-H-----KD---F-IPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLL-----RSLG--ISQLIV 320 (603)
T ss_pred EEecCCC-c-----cc---c-chhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHH-----HHcC--cceEEE
Confidence 9999999 5 11 2 122344445667666666552 1221 123333333322 2222 677999
Q ss_pred EEeCCCCC--C---hhchHHHHHHHHHH-H-hh----cCCCCCCccCCCchh
Q 004126 128 VIRDKTRT--P---LENLEPVLREDIQK-I-WD----SVPKPQAHMETPLSE 168 (772)
Q Consensus 128 VIrd~d~t--~---~e~l~~~l~~~l~~-i-w~----~i~kpsa~~~~~l~d 168 (772)
+|||.|.. + .++++..|.-.|.+ + |. ..+|.|++.|.+|..
T Consensus 321 aiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 321 AINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred EeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 99999876 3 34555666666632 2 32 245889999998743
No 309
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.0037 Score=66.16 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=21.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
||+|||+.++|||||||.+-|-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999994
No 310
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.89 E-value=0.039 Score=70.62 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=75.6
Q ss_pred EEeCCCCCChHHHHhHHhCCCeeeecCCCCC-----CCCcccceeeEecCCCCcEEEEecCCCCCcCCC--CCccHHHHH
Q 004126 3 HIFFVIMTGKSTLLNHLFGTNFREMDAFKGR-----SQTTKGIWMARCAGIEPCTLIMDLEGTDGRERG--EDDTAFEKQ 75 (772)
Q Consensus 3 aIvG~~ssGKSTLLN~LfGtkfsims~~~~r-----~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~--e~~~~fe~k 75 (772)
-|||+|++||||||+.- |..|...+.. ++ ..-|+++=.+. ..+.|++||+|-.-.+.. +. ..-+-.
T Consensus 115 lviG~~gsGKtt~l~~s-gl~~pl~~~~-~~~~~~~~~~t~~c~wwf----~~~avliDtaG~y~~~~~~~~~-~~~~W~ 187 (1169)
T TIGR03348 115 LVIGPPGSGKTTLLQNS-GLKFPLAERL-GAAALRGVGGTRNCDWWF----TDEAVLIDTAGRYTTQDSDPEE-DAAAWL 187 (1169)
T ss_pred EEECCCCCchhHHHHhC-CCCCcCchhh-ccccccCCCCCcccceEe----cCCEEEEcCCCccccCCCcccc-cHHHHH
Confidence 48999999999999999 8888654310 11 12244432222 268899999995532211 11 111112
Q ss_pred HHHHHhh------cccEEEEeeccccccccccC-CHHH---H-HHHHHHHHhhcCCCCccEEEEEeCCCCC-ChhchHHH
Q 004126 76 SALFALA------VSDIVLINMWCHDIGREQAA-NKPL---L-KTVFQVMMRLFSPRKTTLMFVIRDKTRT-PLENLEPV 143 (772)
Q Consensus 76 ~alfALa------~sDvliiNl~~~dig~~~~~-n~~l---L-ktv~evnl~lf~~~k~~llfVIrd~d~t-~~e~l~~~ 143 (772)
.-+--|. -.|=||+.+...++-..+.+ -... + ..+-|+.-+ + ....|+++|+.|+|.. ..+..-..
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-l-g~~~PVYvv~Tk~Dll~GF~~~f~~ 265 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-L-GARFPVYLVLTKADLLAGFEEFFAD 265 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-h-CCCCCEEEEEecchhhcCHHHHHHh
Confidence 2222232 25566666665544311111 1111 1 122221111 1 2589999999999965 34333322
Q ss_pred H-HHHHHHHhhcCCCC
Q 004126 144 L-REDIQKIWDSVPKP 158 (772)
Q Consensus 144 l-~~~l~~iw~~i~kp 158 (772)
+ .+..+.+|--..+.
T Consensus 266 l~~~~r~q~~G~t~~~ 281 (1169)
T TIGR03348 266 LDAEEREQVWGFTFPL 281 (1169)
T ss_pred CCHHHHhhcceeccCC
Confidence 2 33445667633333
No 311
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.88 E-value=0.093 Score=57.94 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=70.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCe-eeecCCCCCCC-CcccceeeEe--c-----------CCCCcEEEEecCCCCCcCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNF-REMDAFKGRSQ-TTKGIWMARC--A-----------GIEPCTLIMDLEGTDGRERG 66 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkf-sims~~~~r~Q-TTrGiw~~i~--~-----------~~~~qil~lDteG~~s~er~ 66 (772)
+.|+|.--|||+||-.+|--+.= +-.| ..|| |+||+-+-.. . .+.-|+-++|+||--|-
T Consensus 10 ~GiLGHvDSGKTtLarals~~~STaAFD---k~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL--- 83 (522)
T KOG0461|consen 10 LGILGHVDSGKTTLARALSELGSTAAFD---KHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL--- 83 (522)
T ss_pred eeeEeeccCchHHHHHHHHhhccchhhc---cCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH---
Confidence 56899999999999999865321 1122 3455 7888874321 1 12357899999996422
Q ss_pred CCccHHHHHHHHHHhhcccEEEEeecccccccc-ccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh
Q 004126 67 EDDTAFEKQSALFALAVSDIVLINMWCHDIGRE-QAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 138 (772)
Q Consensus 67 e~~~~fe~k~alfALa~sDvliiNl~~~dig~~-~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e 138 (772)
-+..+-+..+-|+.|+.+... -|.- +.+.--++-.++. +.+++|||++|.-|..
T Consensus 84 -------IRtiiggaqiiDlm~lviDv~-kG~QtQtAEcLiig~~~c----------~klvvvinkid~lpE~ 138 (522)
T KOG0461|consen 84 -------IRTIIGGAQIIDLMILVIDVQ-KGKQTQTAECLIIGELLC----------KKLVVVINKIDVLPEN 138 (522)
T ss_pred -------HHHHHhhhheeeeeeEEEehh-cccccccchhhhhhhhhc----------cceEEEEeccccccch
Confidence 345555666788888777653 2322 2222223344444 6688999999877663
No 312
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.056 Score=55.51 Aligned_cols=156 Identities=13% Similarity=0.081 Sum_probs=94.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC----CCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG----IEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~----~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.++|-||+||++|+|+..--+|+ .--|-|-|+=--..+. -...+=+.||-|= | .-|-++
T Consensus 25 lVflGdqsVGKTslItRf~yd~fd------~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ---E-------RFrsli 88 (221)
T KOG0094|consen 25 LVFLGDQSVGKTSLITRFMYDKFD------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ---E-------RFRSLI 88 (221)
T ss_pred EEEEccCccchHHHHHHHHHhhhc------ccccceeeeEEEEEEEEEcCcEEEEEEEecccH---H-------HHhhhh
Confidence 568999999999999999988887 2456776664211111 1234557787663 2 223444
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH----HHHHHHHHHhh
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP----VLREDIQKIWD 153 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~----~l~~~l~~iw~ 153 (772)
=.=+.+|+|.||.-...+.+-.. +-...|+.+.. --+...+.+++|-||.|+.+...... .....+.-
T Consensus 89 psY~Rds~vaviVyDit~~~Sfe-~t~kWi~dv~~----e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a--- 160 (221)
T KOG0094|consen 89 PSYIRDSSVAVIVYDITDRNSFE-NTSKWIEDVRR----ERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA--- 160 (221)
T ss_pred hhhccCCeEEEEEEeccccchHH-HHHHHHHHHHh----ccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc---
Confidence 44466899888866555544211 11112333322 11112466778889999876654431 22223322
Q ss_pred cCCCCCCccCCCchhhHHHHHhhcCCCc
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVALSSFE 181 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~Lph~~ 181 (772)
.....++..|.++..+|.-+-..||-..
T Consensus 161 ~f~etsak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 161 EFIETSAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred EEEEecccCCCCHHHHHHHHHHhccCcc
Confidence 2224688899999999999989999864
No 313
>PRK13695 putative NTPase; Provisional
Probab=95.78 E-value=0.036 Score=55.09 Aligned_cols=20 Identities=25% Similarity=0.054 Sum_probs=18.1
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|.|.|.+++|||||+..+.+
T Consensus 3 i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999764
No 314
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=95.63 E-value=0.011 Score=62.16 Aligned_cols=60 Identities=20% Similarity=0.148 Sum_probs=43.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCC----CCCCCCcccceeeEecCC---CCcEEEEecCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAF----KGRSQTTKGIWMARCAGI---EPCTLIMDLEGTD 61 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~----~~r~QTTrGiw~~i~~~~---~~qil~lDteG~~ 61 (772)
|-+||..+.|||||.|.||..++.=-+.. .+-+|||---..+..-.+ .-++-++||||+.
T Consensus 49 IMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfG 115 (336)
T KOG1547|consen 49 IMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFG 115 (336)
T ss_pred EEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcc
Confidence 45899999999999999999876532111 255788875555544332 3588999999997
No 315
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.053 Score=62.75 Aligned_cols=125 Identities=16% Similarity=0.233 Sum_probs=67.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC--CeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT--NFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 78 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt--kfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~al 78 (772)
+|+|+|||++|||||+..|+.. +- +++. -+|.+ .+..++...|-|+.+| -| -.-|-.
T Consensus 71 IvavvGPpGtGKsTLirSlVrr~tk~-ti~~-------i~GPi-TvvsgK~RRiTflEcp-~D--------l~~miD--- 129 (1077)
T COG5192 71 IVAVVGPPGTGKSTLIRSLVRRFTKQ-TIDE-------IRGPI-TVVSGKTRRITFLECP-SD--------LHQMID--- 129 (1077)
T ss_pred EEEeecCCCCChhHHHHHHHHHHHHh-hhhc-------cCCce-EEeecceeEEEEEeCh-HH--------HHHHHh---
Confidence 4789999999999999999862 11 1111 11221 2333455678888887 22 111222
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh-hchHHHHHHHHH-HHhhcCC
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL-ENLEPVLREDIQ-KIWDSVP 156 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~-e~l~~~l~~~l~-~iw~~i~ 156 (772)
...+||+||+.+.. ..|-+- ..|..|..+.. +-.+.++-|+.-.|+-.. ..|. .....+. ++|.+|.
T Consensus 130 -vaKIaDLVlLlIdg-nfGfEM-ETmEFLnil~~-------HGmPrvlgV~ThlDlfk~~stLr-~~KKrlkhRfWtEiy 198 (1077)
T COG5192 130 -VAKIADLVLLLIDG-NFGFEM-ETMEFLNILIS-------HGMPRVLGVVTHLDLFKNPSTLR-SIKKRLKHRFWTEIY 198 (1077)
T ss_pred -HHHhhheeEEEecc-ccCcee-hHHHHHHHHhh-------cCCCceEEEEeecccccChHHHH-HHHHHHhhhHHHHHc
Confidence 23578999876642 222111 12333333222 234567777777776433 3333 2233333 6898876
Q ss_pred C
Q 004126 157 K 157 (772)
Q Consensus 157 k 157 (772)
+
T Consensus 199 q 199 (1077)
T COG5192 199 Q 199 (1077)
T ss_pred C
Confidence 4
No 316
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.57 E-value=0.0079 Score=61.31 Aligned_cols=23 Identities=39% Similarity=0.381 Sum_probs=20.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
.|+|+|+.++|||||||-+-|--
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 38999999999999999999843
No 317
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.55 E-value=0.0071 Score=57.01 Aligned_cols=23 Identities=39% Similarity=0.299 Sum_probs=20.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 37899999999999999999963
No 318
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.50 E-value=0.04 Score=55.23 Aligned_cols=45 Identities=22% Similarity=0.439 Sum_probs=24.3
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 133 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d 133 (772)
|+..+|++++ ..||.-.-......+.|.+ ++. ..+|++.||++..
T Consensus 92 ~~~~~~livi----DEIG~mEl~~~~F~~~v~~----~l~-s~~~vi~vv~~~~ 136 (168)
T PF03266_consen 92 ALSSSDLIVI----DEIGKMELKSPGFREAVEK----LLD-SNKPVIGVVHKRS 136 (168)
T ss_dssp HHHCCHEEEE-------STTCCC-CHHHHHHHH----HHC-TTSEEEEE--SS-
T ss_pred hcCCCCEEEE----eccchhhhcCHHHHHHHHH----HHc-CCCcEEEEEecCC
Confidence 3467887753 4678655555555555544 344 5788999999883
No 319
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.28 E-value=0.031 Score=62.96 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=18.6
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
++.++|++|+||||++.+|.+
T Consensus 139 ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999964
No 320
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=95.27 E-value=0.04 Score=52.95 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=80.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
++.||+-+.||.||-|.|.|...-- .|-| -+ ...+=-.+||||-. -+. ..--...+-.+
T Consensus 4 i~~vG~~gcGKTtL~q~L~G~~~ly-----kKTQ---Av-------e~~d~~~IDTPGEy-~~~-----~~~Y~aL~tt~ 62 (148)
T COG4917 4 IAFVGQVGCGKTTLFQSLYGNDTLY-----KKTQ---AV-------EFNDKGDIDTPGEY-FEH-----PRWYHALITTL 62 (148)
T ss_pred eEEecccccCchhHHHHhhcchhhh-----cccc---ee-------eccCccccCCchhh-hhh-----hHHHHHHHHHh
Confidence 5789999999999999999965431 1211 11 01112245999976 111 11122334456
Q ss_pred hcccEEEEeecccccc-ccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcCCCCC
Q 004126 82 AVSDIVLINMWCHDIG-REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVPKPQ 159 (772)
Q Consensus 82 a~sDvliiNl~~~dig-~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i~kps 159 (772)
+++||+++.--.++.- +.+ +-+-.++ .++++-||.|.|+...+.++.. .+.|-.. -..|...+
T Consensus 63 ~dadvi~~v~~and~~s~f~----p~f~~~~----------~k~vIgvVTK~DLaed~dI~~~-~~~L~eaGa~~IF~~s 127 (148)
T COG4917 63 QDADVIIYVHAANDPESRFP----PGFLDIG----------VKKVIGVVTKADLAEDADISLV-KRWLREAGAEPIFETS 127 (148)
T ss_pred hccceeeeeecccCccccCC----ccccccc----------ccceEEEEecccccchHhHHHH-HHHHHHcCCcceEEEe
Confidence 7899997644332211 000 0111222 2348999999998855444422 2333222 45677789
Q ss_pred CccCCCchhhHHHHHh
Q 004126 160 AHMETPLSEFFNVEVV 175 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~ 175 (772)
+..+.+++++++....
T Consensus 128 ~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 128 AVDNQGVEELVDYLAS 143 (148)
T ss_pred ccCcccHHHHHHHHHh
Confidence 9999999999987543
No 321
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.27 E-value=0.21 Score=42.93 Aligned_cols=62 Identities=23% Similarity=0.106 Sum_probs=42.2
Q ss_pred CEEEeCCCCCChHHHHhHHhC------CCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG------TNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEK 74 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG------tkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~ 74 (772)
++.+.|.+++||||+.+.|.. .++.+++ .++++|++|.-+....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~----------------------d~iivD~~~~~~~~~~-------- 50 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID----------------------DYVLIDTPPGLGLLVL-------- 50 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------CEEEEeCCCCccchhh--------
Confidence 477899999999999888864 2332222 8999999988733321
Q ss_pred HHHHHHhhcccEEEEeecc
Q 004126 75 QSALFALAVSDIVLINMWC 93 (772)
Q Consensus 75 k~alfALa~sDvliiNl~~ 93 (772)
....++..+|.+++-+..
T Consensus 51 -~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 51 -LCLLALLAADLVIIVTTP 68 (99)
T ss_pred -hhhhhhhhCCEEEEecCC
Confidence 024556678888765543
No 322
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.25 E-value=0.013 Score=65.58 Aligned_cols=57 Identities=16% Similarity=0.063 Sum_probs=39.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcc-cceeeEecCCCCcEEEEecCCCCCcCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTK-GIWMARCAGIEPCTLIMDLEGTDGRERG 66 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTr-Giw~~i~~~~~~qil~lDteG~~s~er~ 66 (772)
|.|||.||+|||.++|.|.-.+.=-+. ..|--|| -.|. .-+.+|=++|.||+- ..+.
T Consensus 255 vGViG~PNVGKSSvINsL~~~k~C~vg---~~pGvT~smqeV----~Ldk~i~llDsPgiv-~~~~ 312 (435)
T KOG2484|consen 255 VGIIGYPNVGKSSVINSLKRRKACNVG---NVPGVTRSMQEV----KLDKKIRLLDSPGIV-PPSI 312 (435)
T ss_pred eeeecCCCCChhHHHHHHHHhccccCC---CCccchhhhhhe----eccCCceeccCCcee-ecCC
Confidence 789999999999999999987663222 2233332 2221 136799999999998 4444
No 323
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.20 E-value=0.018 Score=55.58 Aligned_cols=22 Identities=32% Similarity=0.250 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
++.|+|+++||||||++.|.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999985
No 324
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.051 Score=68.66 Aligned_cols=189 Identities=16% Similarity=0.197 Sum_probs=103.5
Q ss_pred EEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec-CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 3 HIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA-GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 3 aIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~-~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
-|||+|++||+|+|... |.+|-+... ...+.+.++=-..|. --.+..|++||.|-.-...+ +....+.+...+
T Consensus 129 ~viG~pgsGKTtal~~s-gl~Fpl~~~--~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s---~~~~~~~~W~~f 202 (1188)
T COG3523 129 MVIGPPGSGKTTALLNS-GLQFPLAEQ--MGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDS---ADEVDRAEWLGF 202 (1188)
T ss_pred EEecCCCCCcchHHhcc-cccCcchhh--hccccccCCCCcccCcccccceEEEcCCcceecccC---cchhhHHHHHHH
Confidence 38999999999998764 777776543 233333333111111 12468899999998744432 233344444332
Q ss_pred ----------hcccEEEEeeccccccccccCCH-HHHHHHH----HHHHhhcCCCCccEEEEEeCCCCCC-hhchHHHHH
Q 004126 82 ----------AVSDIVLINMWCHDIGREQAANK-PLLKTVF----QVMMRLFSPRKTTLMFVIRDKTRTP-LENLEPVLR 145 (772)
Q Consensus 82 ----------a~sDvliiNl~~~dig~~~~~n~-~lLktv~----evnl~lf~~~k~~llfVIrd~d~t~-~e~l~~~l~ 145 (772)
.--|=+|+-+...+++..+.+.. .+.+++- |+.-. .+...|++++++|.|+.| .+..-..+.
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t--L~~~~PVYl~lTk~Dll~GF~efF~~l~ 280 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET--LHARLPVYLVLTKADLLPGFEEFFGSLN 280 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh--hccCCceEEEEecccccccHHHHHhccC
Confidence 23555566666677764443322 3333332 22211 135899999999999865 444333332
Q ss_pred -HHHHHHhhcCCCCCCccCCCchh----hHHHHH----hhcCCCccc---h------hHHHHHHHHHHhhhc
Q 004126 146 -EDIQKIWDSVPKPQAHMETPLSE----FFNVEV----VALSSFEEK---E------ELFKEQVASLRQRFY 199 (772)
Q Consensus 146 -~~l~~iw~~i~kpsa~~~~~l~d----lf~~~~----~~Lph~~~~---~------~~F~~~v~~Lr~~f~ 199 (772)
++.+.+|--..+-++-.+.+.-. .|+... ..+++...+ . =.|-.+...||+++.
T Consensus 281 ~~~r~qvwG~tf~~~~~~~~~~~~~~~~e~~~L~~rl~~~l~~rl~~e~~~~~R~~l~~Fp~q~~~l~~~l~ 352 (1188)
T COG3523 281 KEEREQVWGVTFPLDARRNANLAAELEQEFRLLLDRLNAQLVERLQQERDLEQRGRLLSFPRQLAGLRERLR 352 (1188)
T ss_pred HHHHhhhceeccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHH
Confidence 55667898666666655533322 232222 223332222 1 157777777777763
No 325
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.97 E-value=0.015 Score=60.41 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||||.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 326
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.96 E-value=0.015 Score=59.57 Aligned_cols=22 Identities=27% Similarity=0.251 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 327
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.96 E-value=0.12 Score=56.92 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=22.9
Q ss_pred CEEEeCCCCCChHHHHhHHhC------CCeeeecC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG------TNFREMDA 29 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG------tkfsims~ 29 (772)
++.++|++|+||||++-.|-+ .++.+++.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 478999999999999988875 45666553
No 328
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.94 E-value=0.016 Score=60.54 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=21.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
||+|||..++|||||||.+-|.
T Consensus 34 FvtViGsNGAGKSTlln~iaG~ 55 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGD 55 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCc
Confidence 8999999999999999999995
No 329
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.84 E-value=0.02 Score=58.50 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999994
No 330
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.83 E-value=0.17 Score=54.55 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=22.9
Q ss_pred CEEEeCCCCCChHHHHhHHh------CCCeeeecC
Q 004126 1 MCHIFFVIMTGKSTLLNHLF------GTNFREMDA 29 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf------Gtkfsims~ 29 (772)
++.++|++|+||||++-.|- |.++.+++.
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 36789999999999988885 566766653
No 331
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.018 Score=59.27 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999994
No 332
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=0.039 Score=61.61 Aligned_cols=59 Identities=24% Similarity=0.152 Sum_probs=36.2
Q ss_pred EEeCCCCCChHHHHhHHhCCCeeeecC---CCCCCCCcccceeeEecCCC----CcEEEEecCCCC
Q 004126 3 HIFFVIMTGKSTLLNHLFGTNFREMDA---FKGRSQTTKGIWMARCAGIE----PCTLIMDLEGTD 61 (772)
Q Consensus 3 aIvG~~ssGKSTLLN~LfGtkfsims~---~~~r~QTTrGiw~~i~~~~~----~qil~lDteG~~ 61 (772)
-++|.-+.||||++|.||++.+.-=.. ...++-.|..+-.-.....+ -++=++||||..
T Consensus 25 mvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfG 90 (366)
T KOG2655|consen 25 MVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFG 90 (366)
T ss_pred EEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCc
Confidence 479999999999999999996652100 00122223333322222222 367889999996
No 333
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.78 E-value=0.019 Score=57.77 Aligned_cols=22 Identities=41% Similarity=0.380 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 334
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.77 E-value=0.018 Score=58.92 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 335
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.77 E-value=0.015 Score=57.03 Aligned_cols=28 Identities=25% Similarity=0.181 Sum_probs=21.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDA 29 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~ 29 (772)
|+|.|.||||||||+++|-..++.++.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~g~~~v~E 29 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAARGYPVVPE 29 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHHT-EEE--
T ss_pred EEEECCCCCCHHHHHHHHHHcCCeEEee
Confidence 7899999999999999999887777654
No 336
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=94.77 E-value=3.4 Score=50.83 Aligned_cols=97 Identities=9% Similarity=0.154 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHhhhhhhhHHHHHHHHhcCChhhHHHHHHHHHHHHhhchhhhhccchHHHHHHHHHHHHHHHHHhhHHHH
Q 004126 250 RCEEIANEKYSSFAANEEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAF 329 (772)
Q Consensus 250 RC~Ei~~~~l~~f~~~~~~~~l~~~v~~g~v~~fg~~~~~~~~~~L~~yd~~AsrY~~~V~~~kr~eL~~~i~~~l~~~f 329 (772)
+|.++...+++.|.. +-.-+.+.|-.-. -.+....+....-.-|+.+...+++.+..+-...|...+.. ..-|
T Consensus 296 ~~~~l~~~~L~~YD~--~AsrY~~~V~~~K---r~eL~~~i~~~l~~lf~~qL~~L~~~~l~~Fk~~l~~~lk~--~~~F 368 (742)
T PF05879_consen 296 KLKSLRDKALEEYDE--EASRYHKSVYQEK---RQELESKIDSELQPLFQKQLKHLRKKLLESFKEALSSALKS--GEDF 368 (742)
T ss_pred HHHHHHHHHHHHHHH--HHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCH
Confidence 667777777777743 2223332222111 11112222222233355555566666665555555544432 2377
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 004126 330 QSMLGHIRSGTLDKFKDAFDKALS 353 (772)
Q Consensus 330 ~~~L~~l~~~~l~~fk~~l~~~l~ 353 (772)
...+....+.++..|.+.......
T Consensus 369 a~~v~~~~~~~~~~F~~~a~~~~i 392 (742)
T PF05879_consen 369 AEAVRECKQSALEEFEESAEDLVI 392 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 788888888888999888755433
No 337
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.76 E-value=0.024 Score=56.12 Aligned_cols=54 Identities=20% Similarity=-0.002 Sum_probs=33.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEG 59 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG 59 (772)
++.|+|+++||||||++.|.+..-.+.- ..+-|||....|-. ....+.+++.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~---~~~~~tr~~~~g~~--~~~~~~~~~~~~ 56 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKF---SISATTRKPRPGEV--DGVDYFFVSKEE 56 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccc---cccceeeCCCCCCc--CCcEEEEecHHH
Confidence 4789999999999999999985322211 23557775544322 123444555433
No 338
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.69 E-value=0.02 Score=58.36 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 339
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.69 E-value=0.019 Score=59.23 Aligned_cols=23 Identities=35% Similarity=0.226 Sum_probs=21.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999964
No 340
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.68 E-value=0.02 Score=58.31 Aligned_cols=22 Identities=41% Similarity=0.291 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 341
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=94.67 E-value=0.04 Score=61.26 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=35.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCC--C-CCCC-Ccccc--eeeE--ecCC--CCcEEEEecCCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAF--K-GRSQ-TTKGI--WMAR--CAGI--EPCTLIMDLEGTDG 62 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~--~-~r~Q-TTrGi--w~~i--~~~~--~~qil~lDteG~~s 62 (772)
|-++|.-|+||||++|.|||+.+ ++.. . .++- +.+++ .... +..+ .-++-++||||+..
T Consensus 26 im~~G~sG~GKttfiNtL~~~~l--~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 26 IMVVGESGLGKTTFINTLFGTSL--VDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred EEEecCCCCchhHHHHhhhHhhc--cCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 45799999999999999999933 3321 0 1221 12222 1111 1112 24889999999963
No 342
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.62 E-value=0.022 Score=56.23 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=20.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999963
No 343
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.62 E-value=0.021 Score=58.60 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 344
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=94.61 E-value=0.43 Score=47.32 Aligned_cols=66 Identities=14% Similarity=0.005 Sum_probs=38.0
Q ss_pred CCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEE
Q 004126 48 IEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMF 127 (772)
Q Consensus 48 ~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llf 127 (772)
....++++||||..+. .+..++..||.+|+-+-.... ...-++.+.+. ....+.++.+
T Consensus 91 ~~~d~viiDtpp~~~~------------~~~~~l~~aD~vliv~~~~~~------~~~~~~~~~~~----l~~~~~~~~v 148 (179)
T cd03110 91 EGAELIIIDGPPGIGC------------PVIASLTGADAALLVTEPTPS------GLHDLERAVEL----VRHFGIPVGV 148 (179)
T ss_pred cCCCEEEEECcCCCcH------------HHHHHHHcCCEEEEEecCCcc------cHHHHHHHHHH----HHHcCCCEEE
Confidence 4579999999976521 234467789988875543211 11122222221 1113556789
Q ss_pred EEeCCCCC
Q 004126 128 VIRDKTRT 135 (772)
Q Consensus 128 VIrd~d~t 135 (772)
|+|+++..
T Consensus 149 V~N~~~~~ 156 (179)
T cd03110 149 VINKYDLN 156 (179)
T ss_pred EEeCCCCC
Confidence 99999754
No 345
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.61 E-value=0.02 Score=52.82 Aligned_cols=27 Identities=30% Similarity=0.177 Sum_probs=22.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC-Ceeee
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT-NFREM 27 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt-kfsim 27 (772)
.|.|.|+|+|||||+.+.|... ++.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i 28 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVI 28 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 3789999999999999999764 55544
No 346
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.60 E-value=0.021 Score=58.88 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 47899999999999999999953
No 347
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.60 E-value=0.022 Score=58.00 Aligned_cols=22 Identities=27% Similarity=0.166 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 348
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.59 E-value=0.022 Score=59.79 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+++|+.++||||||++|+|.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999993
No 349
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.58 E-value=0.023 Score=59.30 Aligned_cols=22 Identities=41% Similarity=0.347 Sum_probs=20.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
|++|+||.++||||||.+|.|.
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc
Confidence 6899999999999999999995
No 350
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.56 E-value=0.023 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.164 Sum_probs=20.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
.++|+|+.++|||||+|.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 37899999999999999999963
No 351
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.55 E-value=0.022 Score=59.14 Aligned_cols=22 Identities=45% Similarity=0.344 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 352
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.49 E-value=0.024 Score=58.12 Aligned_cols=22 Identities=45% Similarity=0.339 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 353
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.48 E-value=0.024 Score=57.91 Aligned_cols=22 Identities=32% Similarity=0.393 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999995
No 354
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.48 E-value=0.023 Score=63.41 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=40.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD 61 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~ 61 (772)
|..||.||+|||.++|.|=..++--+.+ -+--|| +|--|.- -..|+++|+||+-
T Consensus 310 VGfiGYPNvGKSSiINTLR~KkVCkvAP---IpGETK-VWQYItL--mkrIfLIDcPGvV 363 (572)
T KOG2423|consen 310 VGFIGYPNVGKSSIINTLRKKKVCKVAP---IPGETK-VWQYITL--MKRIFLIDCPGVV 363 (572)
T ss_pred eeeecCCCCchHHHHHHHhhcccccccC---CCCcch-HHHHHHH--HhceeEecCCCcc
Confidence 6789999999999999999877765553 344454 4432221 2478999999998
No 355
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.47 E-value=0.26 Score=50.52 Aligned_cols=160 Identities=14% Similarity=0.124 Sum_probs=94.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC---CcEEEEecCCCCCcCCCCC-ccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE---PCTLIMDLEGTDGRERGED-DTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~---~qil~lDteG~~s~er~e~-~~~fe~k~a 77 (772)
|.++|--|+|||+|.=+..--+|.- ..-.|+=..++.+....+ -.+.+.||-|-. |... -..|.
T Consensus 8 vvLLG~~~VGKSSlV~Rfvk~~F~e-----~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQE---Ry~slapMYy---- 75 (200)
T KOG0092|consen 8 VVLLGDSGVGKSSLVLRFVKDQFHE-----NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQE---RYHSLAPMYY---- 75 (200)
T ss_pred EEEECCCCCCchhhhhhhhhCcccc-----ccccccccEEEEEEEEeCCcEEEEEEEEcCCcc---ccccccccee----
Confidence 5789999999999999998888874 235566666666554333 356799998864 3321 13443
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhc
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDS 154 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~ 154 (772)
..|+..|+.- |++... -+...++=...|-. ++...+.+|-||.|+...-.+. +....+-+..---
T Consensus 76 ----RgA~AAivvY---Dit~~~-----SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll 143 (200)
T KOG0092|consen 76 ----RGANAAIVVY---DITDEE-----SFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLL 143 (200)
T ss_pred ----cCCcEEEEEE---ecccHH-----HHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCE
Confidence 3677776643 444222 12222221112222 2233445577999987533222 1122222221111
Q ss_pred CCCCCCccCCCchhhHHHHHhhcCCCccchh
Q 004126 155 VPKPQAHMETPLSEFFNVEVVALSSFEEKEE 185 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~~Lph~~~~~~ 185 (772)
...-|+..+.+++++|..+...+|-...+..
T Consensus 144 ~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 144 FFETSAKTGENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred EEEEecccccCHHHHHHHHHHhccCcccccc
Confidence 2245788899999999999999998766643
No 356
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.46 E-value=0.024 Score=58.32 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999995
No 357
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.44 E-value=0.025 Score=58.11 Aligned_cols=22 Identities=41% Similarity=0.330 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 358
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.42 E-value=0.026 Score=58.43 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 359
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.42 E-value=0.026 Score=58.98 Aligned_cols=22 Identities=27% Similarity=0.063 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 360
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.42 E-value=0.025 Score=58.95 Aligned_cols=22 Identities=32% Similarity=0.199 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 361
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.42 E-value=0.024 Score=57.36 Aligned_cols=22 Identities=32% Similarity=0.209 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||||.|.|.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999999995
No 362
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.41 E-value=0.025 Score=58.86 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 363
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.41 E-value=0.023 Score=58.23 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=20.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+++||||||++.|.|.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999873
No 364
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.41 E-value=0.024 Score=59.53 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999995
No 365
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.40 E-value=0.025 Score=58.75 Aligned_cols=22 Identities=18% Similarity=0.085 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||||.|.|.
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 366
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.39 E-value=0.025 Score=58.63 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999995
No 367
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.38 E-value=0.025 Score=59.30 Aligned_cols=22 Identities=27% Similarity=0.227 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 368
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.38 E-value=0.026 Score=57.19 Aligned_cols=22 Identities=41% Similarity=0.200 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
.++|+|+.++||||||+.|.|.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999995
No 369
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.38 E-value=0.026 Score=57.56 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+|||||||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999995
No 370
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.37 E-value=0.026 Score=57.52 Aligned_cols=22 Identities=36% Similarity=0.226 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 371
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=94.36 E-value=0.13 Score=60.77 Aligned_cols=113 Identities=16% Similarity=0.139 Sum_probs=71.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCC--Cc-----ccceeeEecC-----------CCCcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQ--TT-----KGIWMARCAG-----------IEPCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~Q--TT-----rGiw~~i~~~-----------~~~qil~lDteG~~s~ 63 (772)
|+++|.=..||++||..|.+..-.-++....++- |+ +.+-++|... +..-+-+|||||--
T Consensus 131 V~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV-- 208 (971)
T KOG0468|consen 131 VGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV-- 208 (971)
T ss_pred EEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc--
Confidence 7899999999999999999866544432211110 11 1122233221 22455688999854
Q ss_pred CCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCC
Q 004126 64 ERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 134 (772)
Q Consensus 64 er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~ 134 (772)
+|+. -+.-+|+.||.+++.+...+--.. .-..++|...+ ...++.+||||+|.
T Consensus 209 -------nF~D-E~ta~l~~sDgvVlvvDv~EGVml--ntEr~ikhaiq--------~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 209 -------NFSD-ETTASLRLSDGVVLVVDVAEGVML--NTERIIKHAIQ--------NRLPIVVVINKVDR 261 (971)
T ss_pred -------cchH-HHHHHhhhcceEEEEEEcccCcee--eHHHHHHHHHh--------ccCcEEEEEehhHH
Confidence 3443 356788999999887765331100 12235677777 78999999999984
No 372
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.35 E-value=0.027 Score=58.53 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 373
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.35 E-value=0.026 Score=58.44 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+|||||||+.|.|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 374
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.33 E-value=0.028 Score=56.89 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+++||||||.|.|.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 375
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.33 E-value=0.027 Score=57.44 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 376
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.32 E-value=0.027 Score=58.17 Aligned_cols=22 Identities=36% Similarity=0.265 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999995
No 377
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.32 E-value=0.028 Score=57.14 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999953
No 378
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.31 E-value=0.026 Score=59.58 Aligned_cols=22 Identities=27% Similarity=0.140 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 379
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.31 E-value=0.027 Score=59.13 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 380
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.31 E-value=0.026 Score=57.65 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999995
No 381
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.31 E-value=0.027 Score=56.92 Aligned_cols=21 Identities=33% Similarity=0.227 Sum_probs=19.3
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|+|+|+.++|||||||.+++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 478999999999999999985
No 382
>PTZ00099 rab6; Provisional
Probab=94.30 E-value=0.1 Score=52.42 Aligned_cols=115 Identities=9% Similarity=-0.029 Sum_probs=64.6
Q ss_pred CCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEE
Q 004126 49 EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFV 128 (772)
Q Consensus 49 ~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfV 128 (772)
..++.|+||+|.+... . ..-..+..+|++|+.....+.. ...-++..++..++.. ....|+++|
T Consensus 28 ~v~l~iwDt~G~e~~~-~---------~~~~~~~~ad~~ilv~D~t~~~-----sf~~~~~w~~~i~~~~-~~~~piilV 91 (176)
T PTZ00099 28 PVRLQLWDTAGQERFR-S---------LIPSYIRDSAAAIVVYDITNRQ-----SFENTTKWIQDILNER-GKDVIIALV 91 (176)
T ss_pred EEEEEEEECCChHHhh-h---------ccHHHhCCCcEEEEEEECCCHH-----HHHHHHHHHHHHHHhc-CCCCeEEEE
Confidence 4688999999986222 1 1112357899998866543311 1111111111111111 245788999
Q ss_pred EeCCCCCChhchHH-HHHHHHHHHhhcCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 129 IRDKTRTPLENLEP-VLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 129 Ird~d~t~~e~l~~-~l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
.||+|+.....+.. ...+........+.+.|+..+.+++++|+.+...+|-
T Consensus 92 gNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 92 GNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred EECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999753322221 1112222221235678999999999999988776654
No 383
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.30 E-value=0.027 Score=58.41 Aligned_cols=22 Identities=36% Similarity=0.283 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 384
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.29 E-value=0.028 Score=57.45 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 385
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.28 E-value=0.028 Score=56.84 Aligned_cols=23 Identities=30% Similarity=0.196 Sum_probs=20.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999953
No 386
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.28 E-value=0.028 Score=57.26 Aligned_cols=22 Identities=32% Similarity=0.143 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999995
No 387
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.28 E-value=0.028 Score=57.57 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 388
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.25 E-value=0.029 Score=56.61 Aligned_cols=22 Identities=36% Similarity=0.214 Sum_probs=20.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
++.|+|+++||||||||+|.|.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999984
No 389
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.24 E-value=0.029 Score=59.80 Aligned_cols=22 Identities=32% Similarity=0.184 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||||.|.|.
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 390
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.23 E-value=0.029 Score=56.15 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999963
No 391
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=0.029 Score=58.33 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=68.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|-++|+.+|||++|+-+|.-..+. .-+|.-----|.........=++|.||=. +-|... .++.... .++.
T Consensus 41 Vll~Gl~dSGKT~LF~qL~~gs~~-------~TvtSiepn~a~~r~gs~~~~LVD~PGH~-rlR~kl-~e~~~~~-~~ak 110 (238)
T KOG0090|consen 41 VLLVGLSDSGKTSLFTQLITGSHR-------GTVTSIEPNEATYRLGSENVTLVDLPGHS-RLRRKL-LEYLKHN-YSAK 110 (238)
T ss_pred EEEEecCCCCceeeeeehhcCCcc-------CeeeeeccceeeEeecCcceEEEeCCCcH-HHHHHH-HHHcccc-ccce
Confidence 568999999999998877653221 11111111111112233456789999965 444322 2221111 2333
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhc--------CCCCccEEEEEeCCCCC---ChhchHHHHHHHHHH
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF--------SPRKTTLMFVIRDKTRT---PLENLEPVLREDIQK 150 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf--------~~~k~~llfVIrd~d~t---~~e~l~~~l~~~l~~ 150 (772)
+ +++.+.. .. ..+.+.++..-|| ...++|++++-||.|+. |.+.+++.|...+.+
T Consensus 111 a----iVFVVDS---a~-------f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~ 176 (238)
T KOG0090|consen 111 A----IVFVVDS---AT-------FLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHK 176 (238)
T ss_pred e----EEEEEec---cc-------cchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHH
Confidence 3 3232322 10 1122222221222 13689999999999863 778888888888888
Q ss_pred Hh
Q 004126 151 IW 152 (772)
Q Consensus 151 iw 152 (772)
+-
T Consensus 177 lr 178 (238)
T KOG0090|consen 177 LR 178 (238)
T ss_pred HH
Confidence 74
No 392
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.029 Score=57.67 Aligned_cols=22 Identities=32% Similarity=0.264 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 393
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.22 E-value=0.03 Score=57.06 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 394
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.22 E-value=0.071 Score=54.83 Aligned_cols=156 Identities=16% Similarity=0.157 Sum_probs=86.5
Q ss_pred EEEeCCCCCChHHHHhHHhC-----CCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecC-CCCCcCCCCCccHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFG-----TNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLE-GTDGRERGEDDTAFEKQ 75 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG-----tkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDte-G~~s~er~e~~~~fe~k 75 (772)
|.+.|+|+|||+||+=++.. .+++|+. +--.|+.+.=.-... ....++-+=|- |.| + ...|+-
T Consensus 16 i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~---~Di~t~~Da~~l~~~-~g~~i~~v~TG~~CH-----~--da~m~~ 84 (202)
T COG0378 16 IGVGGPPGSGKTALIEKTLRALKDEYKIAVIT---GDIYTKEDADRLRKL-PGEPIIGVETGKGCH-----L--DASMNL 84 (202)
T ss_pred EEecCCCCcCHHHHHHHHHHHHHhhCCeEEEe---ceeechhhHHHHHhC-CCCeeEEeccCCccC-----C--cHHHHH
Confidence 67899999999999988775 3677765 344552222111110 34566666665 665 3 355666
Q ss_pred HHHHHhhc----ccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC-------CCC-cc-----EEEEEeCCCCCChh
Q 004126 76 SALFALAV----SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS-------PRK-TT-----LMFVIRDKTRTPLE 138 (772)
Q Consensus 76 ~alfALa~----sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~-------~~k-~~-----llfVIrd~d~t~~e 138 (772)
.|+.-|.. .|+|+| ...|.--.--.+-|... ..+-+.+ ++| -| =++||||.|+.|.-
T Consensus 85 ~ai~~l~~~~~~~Dll~i----Es~GNL~~~~sp~L~d~--~~v~VidvteGe~~P~K~gP~i~~aDllVInK~DLa~~v 158 (202)
T COG0378 85 EAIEELVLDFPDLDLLFI----ESVGNLVCPFSPDLGDH--LRVVVIDVTEGEDIPRKGGPGIFKADLLVINKTDLAPYV 158 (202)
T ss_pred HHHHHHhhcCCcCCEEEE----ecCcceecccCcchhhc--eEEEEEECCCCCCCcccCCCceeEeeEEEEehHHhHHHh
Confidence 66665554 688865 22331110001111111 1111111 122 22 26899999987654
Q ss_pred chH-HHHHHHHHHH--hhcCCCCCCccCCCchhhHHHHH
Q 004126 139 NLE-PVLREDIQKI--WDSVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 139 ~l~-~~l~~~l~~i--w~~i~kpsa~~~~~l~dlf~~~~ 174 (772)
... +...++..++ -..+...+..++.++++++++..
T Consensus 159 ~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 159 GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHH
Confidence 432 3445555555 23566678889999999987654
No 395
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.22 E-value=0.03 Score=57.28 Aligned_cols=23 Identities=26% Similarity=0.112 Sum_probs=21.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999963
No 396
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.20 E-value=0.026 Score=56.12 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=19.3
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
.++|+|++|||||||+++|..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999996
No 397
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.20 E-value=0.029 Score=58.84 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||||.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999994
No 398
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.20 E-value=0.03 Score=57.72 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=21.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999999963
No 399
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=94.20 E-value=0.029 Score=56.08 Aligned_cols=24 Identities=42% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEeCCCCCChHHHHhHH---hCCCee
Q 004126 2 CHIFFVIMTGKSTLLNHL---FGTNFR 25 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~L---fGtkfs 25 (772)
|+|+|+-|||||||.|+| |||.++
T Consensus 11 VailG~ESsGKStLv~kLA~~fnt~~~ 37 (187)
T COG3172 11 VAILGGESSGKSTLVNKLANIFNTTSA 37 (187)
T ss_pred eeeecCcccChHHHHHHHHHHhCCCch
Confidence 899999999999999987 455443
No 400
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.18 E-value=0.029 Score=58.37 Aligned_cols=22 Identities=23% Similarity=0.055 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhcc
Confidence 4789999999999999999996
No 401
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.18 E-value=0.031 Score=58.99 Aligned_cols=21 Identities=48% Similarity=0.428 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
||+|||+.++||||||.+|-|
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 799999999999999999999
No 402
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.16 E-value=0.11 Score=50.61 Aligned_cols=89 Identities=11% Similarity=0.018 Sum_probs=53.1
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh-cCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD-SVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~-~i~ 156 (772)
..++..+|++++.+...+.- ...+..+.+.+.. ....+|+++|+||+|+.+.+.+...+... .+.+. .+.
T Consensus 3 ~~~l~~aD~il~VvD~~~p~--~~~~~~i~~~l~~------~~~~~p~ilVlNKiDl~~~~~~~~~~~~~-~~~~~~~~~ 73 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPM--GTRCKHVEEYLKK------EKPHKHLIFVLNKCDLVPTWVTARWVKIL-SKEYPTIAF 73 (157)
T ss_pred hHhhhhCCEEEEEEECCCCc--cccCHHHHHHHHh------ccCCCCEEEEEEchhcCCHHHHHHHHHHH-hcCCcEEEE
Confidence 46789999998877653320 1123334444433 01247899999999998766554333322 22221 134
Q ss_pred CCCCccCCCchhhHHHHHh
Q 004126 157 KPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~ 175 (772)
+.|+..+.+++++.+....
T Consensus 74 ~iSa~~~~~~~~L~~~l~~ 92 (157)
T cd01858 74 HASINNPFGKGSLIQLLRQ 92 (157)
T ss_pred EeeccccccHHHHHHHHHH
Confidence 5677778888887776644
No 403
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.16 E-value=0.03 Score=58.76 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 404
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.15 E-value=0.031 Score=58.59 Aligned_cols=22 Identities=27% Similarity=0.150 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 405
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.14 E-value=0.031 Score=58.19 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 406
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.14 E-value=0.032 Score=55.69 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 407
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=94.14 E-value=0.15 Score=49.40 Aligned_cols=93 Identities=16% Similarity=0.041 Sum_probs=56.6
Q ss_pred HHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhc
Q 004126 75 QSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 154 (772)
Q Consensus 75 k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~ 154 (772)
+...-.+..+|++|+.+...+.- ...+..+.+.+.. ..+|+++|+||+|+.+.+.... +....+.....
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~--~~~~~~l~~~~~~--------~~~p~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~ 72 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPE--LTRSRKLERYVLE--------LGKKLLIVLNKADLVPKEVLEK-WKSIKESEGIP 72 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCc--ccCCHHHHHHHHh--------CCCcEEEEEEhHHhCCHHHHHH-HHHHHHhCCCc
Confidence 44555667899998866543211 1223333333322 4689999999999865443322 11111111224
Q ss_pred CCCCCCccCCCchhhHHHHHhhcC
Q 004126 155 VPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
+...|+.++.+++++++.....+|
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 566789999999999998887776
No 408
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.14 E-value=0.059 Score=61.14 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=23.0
Q ss_pred CEEEeCCCCCChHHHHhHHh------CCCeeeecC
Q 004126 1 MCHIFFVIMTGKSTLLNHLF------GTNFREMDA 29 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf------Gtkfsims~ 29 (772)
.|.++|++|+||||++..|. |.++.+++.
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 37899999999999999996 345555554
No 409
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.12 E-value=0.032 Score=56.48 Aligned_cols=22 Identities=32% Similarity=0.197 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 410
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.12 E-value=0.031 Score=58.49 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999994
No 411
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.10 E-value=0.032 Score=56.79 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+.++||||||+.|.|.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 412
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.09 E-value=0.032 Score=59.19 Aligned_cols=22 Identities=32% Similarity=0.307 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 413
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.09 E-value=0.032 Score=58.20 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 414
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.09 E-value=0.031 Score=58.72 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 31 VVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 4789999999999999999984
No 415
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.09 E-value=0.035 Score=56.89 Aligned_cols=22 Identities=41% Similarity=0.428 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 416
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.032 Score=58.54 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999994
No 417
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.06 E-value=0.033 Score=58.23 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 418
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.04 E-value=0.032 Score=57.00 Aligned_cols=23 Identities=30% Similarity=0.213 Sum_probs=21.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|.-
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 47899999999999999999963
No 419
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.04 E-value=0.032 Score=59.56 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 420
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.03 E-value=0.033 Score=58.92 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=20.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999953
No 421
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.02 E-value=0.033 Score=60.91 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+.++||||||+.|.|.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999995
No 422
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.02 E-value=0.032 Score=59.03 Aligned_cols=22 Identities=27% Similarity=0.126 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999995
No 423
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.00 E-value=0.033 Score=58.17 Aligned_cols=22 Identities=36% Similarity=0.262 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999996
No 424
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.036 Score=55.10 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|-
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 425
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.99 E-value=0.033 Score=58.94 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 426
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.99 E-value=0.033 Score=59.26 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999995
No 427
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.98 E-value=0.036 Score=56.45 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=20.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999953
No 428
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.97 E-value=0.033 Score=55.24 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=19.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
++.|+|++|||||||+|.|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 429
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=93.97 E-value=0.034 Score=58.71 Aligned_cols=22 Identities=36% Similarity=0.277 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 430
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.97 E-value=0.036 Score=55.26 Aligned_cols=22 Identities=36% Similarity=0.307 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999996
No 431
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.96 E-value=0.035 Score=57.15 Aligned_cols=22 Identities=32% Similarity=0.301 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 432
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.95 E-value=0.035 Score=58.48 Aligned_cols=23 Identities=30% Similarity=0.231 Sum_probs=20.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999953
No 433
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.94 E-value=0.036 Score=58.36 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+|||||||+.|.|.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999994
No 434
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.94 E-value=0.036 Score=57.68 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=21.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999963
No 435
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.94 E-value=0.036 Score=57.43 Aligned_cols=22 Identities=32% Similarity=0.087 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 436
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.93 E-value=0.036 Score=57.09 Aligned_cols=22 Identities=32% Similarity=0.310 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999995
No 437
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.92 E-value=0.034 Score=59.22 Aligned_cols=22 Identities=27% Similarity=0.128 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+|||||||+.|.|.
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999995
No 438
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.91 E-value=0.037 Score=59.13 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
|++||||.++|||||+..++|
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999999
No 439
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.90 E-value=0.036 Score=57.31 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999953
No 440
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=93.90 E-value=0.037 Score=56.80 Aligned_cols=23 Identities=39% Similarity=0.345 Sum_probs=20.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 47899999999999999999953
No 441
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.90 E-value=0.036 Score=58.68 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 442
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.89 E-value=0.037 Score=56.70 Aligned_cols=22 Identities=41% Similarity=0.378 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 443
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=93.89 E-value=0.037 Score=58.98 Aligned_cols=22 Identities=36% Similarity=0.224 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 444
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.89 E-value=0.048 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=19.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
.+.|.|.++|||||+.|.|...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998864
No 445
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.89 E-value=0.037 Score=56.80 Aligned_cols=22 Identities=36% Similarity=0.273 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999995
No 446
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.89 E-value=0.037 Score=58.06 Aligned_cols=23 Identities=35% Similarity=0.248 Sum_probs=20.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999999953
No 447
>PRK10908 cell division protein FtsE; Provisional
Probab=93.88 E-value=0.038 Score=56.93 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 448
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.87 E-value=0.037 Score=58.21 Aligned_cols=22 Identities=27% Similarity=0.164 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 449
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.87 E-value=0.038 Score=58.06 Aligned_cols=22 Identities=41% Similarity=0.329 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 450
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.86 E-value=0.038 Score=56.84 Aligned_cols=22 Identities=32% Similarity=0.149 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 3789999999999999999995
No 451
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.84 E-value=0.037 Score=59.08 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 41 ~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 41 VTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 452
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.84 E-value=0.036 Score=59.87 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=20.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+.++||||||+.|.|.
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999995
No 453
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.84 E-value=0.04 Score=55.47 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=20.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|.|+|+.+||||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999875
No 454
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.84 E-value=0.038 Score=58.92 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999996
No 455
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.038 Score=57.22 Aligned_cols=23 Identities=26% Similarity=0.108 Sum_probs=20.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999963
No 456
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.82 E-value=0.046 Score=56.22 Aligned_cols=37 Identities=16% Similarity=-0.020 Sum_probs=25.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccc
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGI 40 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGi 40 (772)
++.|+|++++|||||++.|......+.- ..+-|||..
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~~~~~~~---~~~~ttr~~ 51 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRERKLPFHF---VVTATTRPK 51 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhcCCcccc---cccccCCCC
Confidence 4789999999999999999854322211 234566644
No 457
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.81 E-value=0.038 Score=59.18 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 458
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.80 E-value=0.038 Score=58.90 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=20.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999999953
No 459
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.79 E-value=0.038 Score=59.54 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999994
No 460
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.79 E-value=0.051 Score=55.28 Aligned_cols=38 Identities=26% Similarity=0.130 Sum_probs=28.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccce
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW 41 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw 41 (772)
++.|+|+++||||||+++|+...-.+.. ..+-|||-.=
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~~~~~~---~v~~TTR~~r 43 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEHPDFLF---SISCTTRAPR 43 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCcccc---ccCccCCCCC
Confidence 4789999999999999999976423222 2466888653
No 461
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.039 Score=58.90 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 462
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.78 E-value=0.038 Score=58.94 Aligned_cols=22 Identities=32% Similarity=0.255 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999995
No 463
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.78 E-value=0.039 Score=58.01 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 464
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.77 E-value=0.042 Score=54.45 Aligned_cols=22 Identities=36% Similarity=0.197 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999995
No 465
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.77 E-value=0.04 Score=56.11 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999953
No 466
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.77 E-value=0.039 Score=57.92 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=20.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 32 LTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 47899999999999999999953
No 467
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.77 E-value=0.039 Score=59.52 Aligned_cols=22 Identities=27% Similarity=0.304 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999994
No 468
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.76 E-value=0.038 Score=58.72 Aligned_cols=22 Identities=32% Similarity=0.168 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999995
No 469
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.75 E-value=0.041 Score=57.41 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 470
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.75 E-value=0.039 Score=57.86 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 31 VTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999994
No 471
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.74 E-value=0.04 Score=57.87 Aligned_cols=22 Identities=27% Similarity=0.153 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 33 ITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999994
No 472
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.042 Score=55.60 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999953
No 473
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.73 E-value=0.04 Score=59.02 Aligned_cols=22 Identities=41% Similarity=0.261 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999995
No 474
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.72 E-value=0.041 Score=57.09 Aligned_cols=22 Identities=36% Similarity=0.234 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||++.|.|.
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999994
No 475
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.72 E-value=0.04 Score=57.94 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999995
No 476
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.71 E-value=0.041 Score=57.70 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||||.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 32 VNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 477
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.70 E-value=0.042 Score=55.82 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999995
No 478
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.70 E-value=0.043 Score=56.87 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 479
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.69 E-value=0.041 Score=57.86 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 32 ITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999994
No 480
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.68 E-value=0.044 Score=54.79 Aligned_cols=22 Identities=41% Similarity=0.371 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 481
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.67 E-value=0.043 Score=54.50 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999995
No 482
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=93.66 E-value=0.41 Score=51.85 Aligned_cols=55 Identities=24% Similarity=0.160 Sum_probs=41.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGT 60 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~ 60 (772)
+++.|+.|+|||.|||.++-.+..--+ ..+++|-|+-|---.. .....++|.||.
T Consensus 139 ~~~~g~SNVGKSSLln~~~r~k~~~~t-~k~K~g~Tq~in~f~v---~~~~~~vDlPG~ 193 (320)
T KOG2486|consen 139 LAFYGRSNVGKSSLLNDLVRVKNIADT-SKSKNGKTQAINHFHV---GKSWYEVDLPGY 193 (320)
T ss_pred eeeecCCcccHHHHHhhhhhhhhhhhh-cCCCCccceeeeeeec---cceEEEEecCCc
Confidence 578999999999999999998775443 3347777776654333 357788999994
No 483
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.64 E-value=0.042 Score=59.01 Aligned_cols=22 Identities=27% Similarity=0.113 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999995
No 484
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=93.62 E-value=0.044 Score=57.83 Aligned_cols=22 Identities=27% Similarity=0.163 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||||.|.|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999995
No 485
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.61 E-value=0.045 Score=55.87 Aligned_cols=22 Identities=41% Similarity=0.362 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 486
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.61 E-value=0.044 Score=58.29 Aligned_cols=22 Identities=32% Similarity=0.256 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 487
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.61 E-value=0.044 Score=57.60 Aligned_cols=22 Identities=36% Similarity=0.224 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||||.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3789999999999999999995
No 488
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.61 E-value=0.043 Score=58.60 Aligned_cols=22 Identities=32% Similarity=0.212 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999996
No 489
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.60 E-value=0.054 Score=45.86 Aligned_cols=19 Identities=37% Similarity=0.207 Sum_probs=16.6
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
..|.|+.+|||||||.++.
T Consensus 26 tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999998764
No 490
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.59 E-value=0.044 Score=58.08 Aligned_cols=22 Identities=41% Similarity=0.362 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 491
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.58 E-value=0.045 Score=56.61 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|.-
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 47899999999999999999964
No 492
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.58 E-value=0.044 Score=59.08 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 493
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.54 E-value=0.045 Score=57.05 Aligned_cols=22 Identities=27% Similarity=0.135 Sum_probs=20.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|.|+++||||||.+.|.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 494
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.54 E-value=0.13 Score=52.35 Aligned_cols=153 Identities=14% Similarity=0.079 Sum_probs=90.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.-|+||||+|++|=--.+-... =|-|--.--.......+-|.|+-|-+ +=|. +-.--.
T Consensus 20 IlmlGLD~AGKTTILykLk~~E~vttv-------PTiGfnVE~v~ykn~~f~vWDvGGq~-k~R~---------lW~~Y~ 82 (181)
T KOG0070|consen 20 ILMVGLDAAGKTTILYKLKLGEIVTTV-------PTIGFNVETVEYKNISFTVWDVGGQE-KLRP---------LWKHYF 82 (181)
T ss_pred EEEEeccCCCceeeeEeeccCCcccCC-------CccccceeEEEEcceEEEEEecCCCc-cccc---------chhhhc
Confidence 578999999999999988543332211 12333222223356788999998875 2222 111223
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC---ChhchHHHHH--HHHHHHhhcCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT---PLENLEPVLR--EDIQKIWDSVP 156 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t---~~e~l~~~l~--~~l~~iw~~i~ 156 (772)
...+.+|+.++..|.-|...+...|-+.+.+.+ -...|+++.-||.|.. +...+.+.+. ....+-|- |.
T Consensus 83 ~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~-----l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~-iq 156 (181)
T KOG0070|consen 83 QNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE-----LRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWH-IQ 156 (181)
T ss_pred cCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc-----cCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcE-Ee
Confidence 578899998887666554433222222222210 1578999999999853 3333333322 11112265 88
Q ss_pred CCCCccCCCchhhHHHHHhhc
Q 004126 157 KPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~L 177 (772)
...+..+.++.+-++-....+
T Consensus 157 ~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 157 STCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred eccccccccHHHHHHHHHHHH
Confidence 888999999988887655443
No 495
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=93.52 E-value=0.046 Score=57.47 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 496
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.52 E-value=0.056 Score=53.58 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=18.7
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|+|+|+||||||.+.|.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999998
No 497
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.51 E-value=0.047 Score=56.84 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999995
No 498
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=93.50 E-value=0.045 Score=58.20 Aligned_cols=22 Identities=36% Similarity=0.197 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999995
No 499
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.50 E-value=0.047 Score=57.30 Aligned_cols=22 Identities=32% Similarity=0.247 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999995
No 500
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.49 E-value=0.046 Score=58.45 Aligned_cols=22 Identities=27% Similarity=0.147 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 52 ~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 52 VTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999995
Done!