Query 004126
Match_columns 772
No_of_seqs 250 out of 982
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 15:07:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q5d_A Atlastin-1; G protein, 100.0 1.8E-34 6E-39 323.6 23.6 313 1-328 69-432 (447)
2 1f5n_A Interferon-induced guan 99.9 6.3E-25 2.2E-29 253.7 32.9 330 2-353 41-423 (592)
3 4ido_A Atlastin-1; GTPase, GTP 99.9 3.7E-22 1.3E-26 223.4 26.0 304 1-326 69-430 (457)
4 3iev_A GTP-binding protein ERA 99.8 1.5E-18 5E-23 185.5 12.7 166 1-179 12-182 (308)
5 1wf3_A GTP-binding protein; GT 99.7 5.1E-18 1.7E-22 181.2 11.7 185 1-201 9-204 (301)
6 1ega_A Protein (GTP-binding pr 99.7 4.4E-18 1.5E-22 181.3 7.2 184 1-200 10-204 (301)
7 2j69_A Bacterial dynamin-like 99.5 2.8E-12 9.7E-17 151.3 26.0 116 2-136 72-244 (695)
8 1jwy_B Dynamin A GTPase domain 99.5 3.7E-14 1.3E-18 149.8 8.8 166 2-178 27-261 (315)
9 4dhe_A Probable GTP-binding pr 99.5 1.2E-13 4.1E-18 137.7 11.5 167 2-181 32-213 (223)
10 1mky_A Probable GTP-binding pr 99.4 1.2E-13 4.2E-18 154.2 10.3 162 2-179 4-166 (439)
11 3gee_A MNME, tRNA modification 99.4 7.3E-13 2.5E-17 150.0 14.3 224 2-262 236-472 (476)
12 3iby_A Ferrous iron transport 99.4 1.8E-13 6E-18 142.7 8.0 159 2-180 4-167 (256)
13 3i8s_A Ferrous iron transport 99.4 2.1E-13 7.2E-18 143.2 8.4 160 2-180 6-170 (274)
14 2qu8_A Putative nucleolar GTP- 99.4 1.2E-12 4.2E-17 132.0 13.6 167 2-179 32-205 (228)
15 3pqc_A Probable GTP-binding pr 99.4 1.7E-12 5.9E-17 125.4 14.1 161 2-178 26-193 (195)
16 2hjg_A GTP-binding protein ENG 99.4 2.2E-13 7.5E-18 152.0 5.9 158 2-179 6-165 (436)
17 2xtp_A GTPase IMAP family memb 99.4 8.1E-13 2.8E-17 136.2 9.3 164 2-179 25-208 (260)
18 2dyk_A GTP-binding protein; GT 99.4 1.5E-12 5E-17 122.0 10.2 156 2-178 4-161 (161)
19 3a1s_A Iron(II) transport prot 99.4 1.7E-12 6E-17 135.2 11.5 177 2-199 8-194 (258)
20 2aka_B Dynamin-1; fusion prote 99.4 7.7E-13 2.6E-17 138.3 8.8 160 2-175 29-249 (299)
21 1svi_A GTP-binding protein YSX 99.4 3.9E-12 1.3E-16 123.6 13.1 161 2-178 26-194 (195)
22 1xzp_A Probable tRNA modificat 99.4 1.1E-12 3.7E-17 148.8 10.2 157 2-177 246-403 (482)
23 3k53_A Ferrous iron transport 99.4 1.2E-12 4E-17 136.6 9.2 178 2-199 6-189 (271)
24 2hjg_A GTP-binding protein ENG 99.3 1.3E-12 4.3E-17 145.9 9.7 164 2-178 178-348 (436)
25 2e87_A Hypothetical protein PH 99.3 2.2E-11 7.5E-16 132.3 18.8 184 2-199 170-354 (357)
26 2wjg_A FEOB, ferrous iron tran 99.3 2.5E-12 8.5E-17 124.3 9.5 177 2-197 10-186 (188)
27 4dcu_A GTP-binding protein ENG 99.3 8.3E-13 2.8E-17 148.2 7.0 160 2-179 26-185 (456)
28 3b1v_A Ferrous iron uptake tra 99.3 5E-12 1.7E-16 133.1 12.5 173 2-198 6-189 (272)
29 1mky_A Probable GTP-binding pr 99.3 1.5E-12 5.2E-17 145.3 8.7 164 2-178 183-354 (439)
30 4dcu_A GTP-binding protein ENG 99.3 7E-12 2.4E-16 140.7 12.9 164 2-178 198-368 (456)
31 2wji_A Ferrous iron transport 99.3 4.2E-12 1.4E-16 121.4 9.5 153 2-177 6-163 (165)
32 2gj8_A MNME, tRNA modification 99.3 2.1E-12 7.3E-17 124.9 6.7 159 2-179 7-166 (172)
33 3lxw_A GTPase IMAP family memb 99.3 3.8E-12 1.3E-16 131.5 9.0 125 2-136 24-153 (247)
34 3geh_A MNME, tRNA modification 99.3 2.3E-12 7.9E-17 145.4 6.7 159 2-180 227-385 (462)
35 2nzj_A GTP-binding protein REM 99.3 2.8E-11 9.7E-16 114.8 13.1 160 2-177 7-167 (175)
36 4a9a_A Ribosome-interacting GT 99.2 1.4E-11 4.8E-16 135.6 9.8 118 2-134 75-194 (376)
37 4dsu_A GTPase KRAS, isoform 2B 99.2 6.1E-11 2.1E-15 113.9 13.1 157 2-178 7-165 (189)
38 2qpt_A EH domain-containing pr 99.2 1.2E-11 3.9E-16 142.5 9.3 129 1-143 67-239 (550)
39 2x2e_A Dynamin-1; nitration, h 99.2 4.6E-12 1.6E-16 137.5 5.6 161 2-174 34-253 (353)
40 3qq5_A Small GTP-binding prote 99.2 1.8E-11 6.3E-16 136.6 9.7 159 2-180 37-197 (423)
41 2erx_A GTP-binding protein DI- 99.2 2.2E-10 7.5E-15 107.9 13.9 161 2-180 6-168 (172)
42 3clv_A RAB5 protein, putative; 99.2 1E-10 3.5E-15 112.9 11.6 158 2-177 10-202 (208)
43 1ek0_A Protein (GTP-binding pr 99.2 8.6E-11 2.9E-15 110.5 10.6 160 2-179 6-169 (170)
44 3lxx_A GTPase IMAP family memb 99.2 6E-11 2E-15 120.8 10.2 129 2-141 32-164 (239)
45 1c1y_A RAS-related protein RAP 99.2 2.9E-10 9.9E-15 106.8 14.2 156 2-177 6-165 (167)
46 1z0j_A RAB-22, RAS-related pro 99.2 7E-11 2.4E-15 111.3 10.0 159 2-178 9-168 (170)
47 1u8z_A RAS-related protein RAL 99.2 1.6E-10 5.6E-15 108.1 12.4 155 2-176 7-164 (168)
48 2efe_B Small GTP-binding prote 99.2 1.2E-10 4.3E-15 111.2 11.6 161 2-180 15-176 (181)
49 3q72_A GTP-binding protein RAD 99.2 1.1E-10 3.6E-15 110.1 10.6 156 2-176 5-161 (166)
50 1kao_A RAP2A; GTP-binding prot 99.2 8.9E-11 3E-15 109.8 9.9 155 2-176 6-163 (167)
51 2ce2_X GTPase HRAS; signaling 99.2 2.8E-10 9.5E-15 106.1 13.2 156 2-177 6-163 (166)
52 3bc1_A RAS-related protein RAB 99.1 3.5E-10 1.2E-14 108.7 14.0 155 2-177 14-183 (195)
53 3tw8_B RAS-related protein RAB 99.1 2.2E-10 7.5E-15 109.0 12.3 155 2-178 12-170 (181)
54 1r2q_A RAS-related protein RAB 99.1 1.1E-10 3.7E-15 109.8 10.0 159 2-178 9-168 (170)
55 3t5d_A Septin-7; GTP-binding p 99.1 2E-10 6.7E-15 120.1 12.9 174 2-185 11-210 (274)
56 2fn4_A P23, RAS-related protei 99.1 2.2E-10 7.7E-15 108.9 12.2 156 2-177 12-170 (181)
57 1wxq_A GTP-binding protein; st 99.1 5.7E-12 1.9E-16 139.6 1.2 87 2-95 3-113 (397)
58 3q85_A GTP-binding protein REM 99.1 1.2E-10 4E-15 110.1 10.1 158 2-177 5-165 (169)
59 2bov_A RAla, RAS-related prote 99.1 3.9E-10 1.3E-14 110.2 13.9 157 2-178 17-176 (206)
60 3con_A GTPase NRAS; structural 99.1 3.5E-10 1.2E-14 109.6 13.4 156 2-177 24-181 (190)
61 2a9k_A RAS-related protein RAL 99.1 3.4E-10 1.2E-14 108.2 13.2 156 2-177 21-179 (187)
62 2fg5_A RAB-22B, RAS-related pr 99.1 5E-11 1.7E-15 116.5 7.4 160 2-179 26-186 (192)
63 1z0f_A RAB14, member RAS oncog 99.1 3.1E-10 1.1E-14 107.8 12.5 158 2-177 18-176 (179)
64 1r8s_A ADP-ribosylation factor 99.1 3.7E-10 1.3E-14 106.1 12.7 154 2-179 3-162 (164)
65 2g6b_A RAS-related protein RAB 99.1 2.4E-10 8.1E-15 109.1 11.4 158 2-178 13-173 (180)
66 1lnz_A SPO0B-associated GTP-bi 99.1 9.4E-11 3.2E-15 127.5 9.5 165 2-179 161-330 (342)
67 1zd9_A ADP-ribosylation factor 99.1 4E-10 1.4E-14 109.7 13.0 153 2-179 25-185 (188)
68 1x3s_A RAS-related protein RAB 99.1 1E-10 3.5E-15 113.1 8.6 160 2-178 18-177 (195)
69 1wms_A RAB-9, RAB9, RAS-relate 99.1 2.9E-10 9.9E-15 108.2 11.5 161 2-178 10-173 (177)
70 3cph_A RAS-related protein SEC 99.1 1.2E-10 4E-15 114.7 9.1 156 2-177 23-180 (213)
71 2y8e_A RAB-protein 6, GH09086P 99.1 1.4E-10 5E-15 110.1 9.1 158 2-179 17-177 (179)
72 1g16_A RAS-related protein SEC 99.1 1.1E-10 3.7E-15 110.0 7.9 157 2-178 6-164 (170)
73 3t5g_A GTP-binding protein RHE 99.1 3.1E-10 1.1E-14 108.8 11.2 157 2-178 9-168 (181)
74 3zvr_A Dynamin-1; hydrolase, D 99.1 2.8E-10 9.7E-15 135.0 12.9 160 2-175 54-274 (772)
75 2cxx_A Probable GTP-binding pr 99.1 3.2E-10 1.1E-14 109.1 11.1 158 2-178 4-183 (190)
76 2oil_A CATX-8, RAS-related pro 99.1 3.4E-10 1.2E-14 110.1 11.3 158 2-177 28-186 (193)
77 1z06_A RAS-related protein RAB 99.1 4.2E-10 1.4E-14 109.3 11.8 159 2-178 23-187 (189)
78 3oes_A GTPase rhebl1; small GT 99.1 3.1E-10 1.1E-14 111.7 10.8 157 2-178 27-186 (201)
79 2gf0_A GTP-binding protein DI- 99.1 4.6E-10 1.6E-14 109.0 12.0 161 2-180 11-172 (199)
80 3tkl_A RAS-related protein RAB 99.1 4.4E-10 1.5E-14 108.9 11.7 156 2-177 19-177 (196)
81 1upt_A ARL1, ADP-ribosylation 99.1 3E-10 1E-14 107.3 10.1 151 2-178 10-168 (171)
82 2gf9_A RAS-related protein RAB 99.1 1.9E-10 6.6E-15 111.7 8.9 159 2-178 25-184 (189)
83 4bas_A ADP-ribosylation factor 99.1 1.7E-10 5.7E-15 112.2 8.3 156 2-178 20-188 (199)
84 3kkq_A RAS-related protein M-R 99.1 3.3E-10 1.1E-14 108.9 10.2 155 2-176 21-179 (183)
85 1z2a_A RAS-related protein RAB 99.1 3E-10 1E-14 106.8 9.6 155 2-177 8-165 (168)
86 1zbd_A Rabphilin-3A; G protein 99.1 7.7E-10 2.6E-14 108.4 12.7 158 2-177 11-169 (203)
87 3dz8_A RAS-related protein RAB 99.1 1.5E-10 5.2E-15 112.8 7.6 158 2-177 26-184 (191)
88 2lkc_A Translation initiation 99.1 2.5E-10 8.7E-15 108.7 8.6 151 2-177 11-169 (178)
89 2h57_A ADP-ribosylation factor 99.1 4.8E-10 1.6E-14 108.9 10.4 155 2-177 24-185 (190)
90 2f7s_A C25KG, RAS-related prot 99.0 7.1E-10 2.4E-14 110.0 11.4 152 2-177 28-197 (217)
91 2cjw_A GTP-binding protein GEM 99.0 8.8E-10 3E-14 108.5 11.9 159 2-177 9-170 (192)
92 3reg_A RHO-like small GTPase; 99.0 2.3E-10 7.8E-15 111.6 7.0 156 2-178 26-187 (194)
93 2atv_A RERG, RAS-like estrogen 99.0 9.9E-10 3.4E-14 107.4 11.5 155 2-177 31-189 (196)
94 2hxs_A RAB-26, RAS-related pro 99.0 8.9E-10 3E-14 104.9 10.6 163 2-181 9-175 (178)
95 1fzq_A ADP-ribosylation factor 99.0 1.9E-09 6.4E-14 104.6 12.9 155 2-179 19-178 (181)
96 1z08_A RAS-related protein RAB 99.0 3.8E-10 1.3E-14 106.5 7.8 155 2-178 9-168 (170)
97 2a5j_A RAS-related protein RAB 99.0 3E-10 1E-14 110.7 7.1 158 2-177 24-182 (191)
98 2qtf_A Protein HFLX, GTP-bindi 99.0 1.1E-09 3.9E-14 119.8 12.5 165 2-177 182-352 (364)
99 2bme_A RAB4A, RAS-related prot 99.0 9.1E-10 3.1E-14 105.8 10.3 156 2-177 13-171 (186)
100 2il1_A RAB12; G-protein, GDP, 99.0 7.7E-10 2.6E-14 108.2 9.7 156 2-177 29-188 (192)
101 1zj6_A ADP-ribosylation factor 99.0 1.1E-09 3.8E-14 106.1 10.8 156 2-180 19-179 (187)
102 1ksh_A ARF-like protein 2; sma 99.0 8.5E-10 2.9E-14 106.4 9.9 153 2-180 21-181 (186)
103 2atx_A Small GTP binding prote 99.0 7.5E-10 2.6E-14 107.8 9.6 155 2-177 21-191 (194)
104 4djt_A GTP-binding nuclear pro 99.0 3.8E-10 1.3E-14 112.1 7.6 161 2-180 14-176 (218)
105 3cbq_A GTP-binding protein REM 99.0 1.5E-09 5.3E-14 107.0 11.9 161 2-180 26-189 (195)
106 2hup_A RAS-related protein RAB 99.0 8.3E-10 2.8E-14 109.1 9.7 155 2-178 32-192 (201)
107 1vg8_A RAS-related protein RAB 99.0 1.3E-09 4.3E-14 106.9 10.8 158 2-178 11-174 (207)
108 2b6h_A ADP-ribosylation factor 99.0 1.5E-09 5.2E-14 106.5 11.2 154 2-178 32-190 (192)
109 1h65_A Chloroplast outer envel 99.0 2.2E-09 7.6E-14 111.7 13.1 127 2-138 42-170 (270)
110 2h17_A ADP-ribosylation factor 99.0 1E-09 3.6E-14 105.9 9.8 150 2-175 24-179 (181)
111 2g3y_A GTP-binding protein GEM 99.0 2.3E-09 8E-14 108.3 12.6 159 2-177 40-201 (211)
112 2www_A Methylmalonic aciduria 99.0 5E-10 1.7E-14 121.8 8.2 149 1-179 76-279 (349)
113 1f6b_A SAR1; gtpases, N-termin 99.0 1.2E-09 4E-14 107.9 10.0 152 2-176 28-196 (198)
114 2x77_A ADP-ribosylation factor 99.0 1.5E-09 5E-14 105.2 10.2 154 2-178 25-183 (189)
115 2bcg_Y Protein YP2, GTP-bindin 99.0 2.6E-09 9E-14 105.0 12.1 157 2-178 11-170 (206)
116 2fv8_A H6, RHO-related GTP-bin 99.0 5.6E-10 1.9E-14 110.5 7.4 158 2-180 28-201 (207)
117 2p5s_A RAS and EF-hand domain 99.0 9.2E-10 3.2E-14 108.1 8.9 159 2-178 31-196 (199)
118 1mh1_A RAC1; GTP-binding, GTPa 99.0 5E-10 1.7E-14 107.2 6.7 158 2-180 8-181 (186)
119 3bwd_D RAC-like GTP-binding pr 99.0 3.3E-10 1.1E-14 108.3 5.3 157 2-179 11-181 (182)
120 1m2o_B GTP-binding protein SAR 99.0 1E-09 3.4E-14 107.6 8.9 152 2-176 26-189 (190)
121 2j0v_A RAC-like GTP-binding pr 99.0 7.1E-10 2.4E-14 109.6 7.8 158 2-180 12-181 (212)
122 2q3h_A RAS homolog gene family 99.0 9.2E-10 3.2E-14 107.7 8.4 156 2-178 23-194 (201)
123 3j2k_7 ERF3, eukaryotic polype 99.0 3.2E-09 1.1E-13 118.8 13.2 152 2-171 20-217 (439)
124 1ky3_A GTP-binding protein YPT 99.0 1.9E-09 6.6E-14 102.5 9.8 160 2-177 11-176 (182)
125 2yc2_C IFT27, small RAB-relate 98.9 2E-09 7E-14 105.0 10.2 168 2-196 23-203 (208)
126 3lvq_E ARF-GAP with SH3 domain 98.9 1.3E-09 4.5E-14 122.9 10.0 156 2-180 325-485 (497)
127 2ew1_A RAS-related protein RAB 98.9 2.3E-09 7.7E-14 106.7 10.4 155 2-178 29-188 (201)
128 4gzl_A RAS-related C3 botulinu 98.9 1E-09 3.5E-14 108.7 7.5 154 2-176 33-202 (204)
129 2fu5_C RAS-related protein RAB 98.9 1.1E-09 3.7E-14 105.2 7.3 157 2-178 11-170 (183)
130 2gco_A H9, RHO-related GTP-bin 98.9 7.5E-10 2.6E-14 109.1 6.3 154 2-175 28-196 (201)
131 3o47_A ADP-ribosylation factor 98.9 6E-10 2E-14 120.0 5.9 152 2-179 168-327 (329)
132 2o52_A RAS-related protein RAB 98.9 1.3E-09 4.5E-14 107.4 7.7 156 2-177 28-186 (200)
133 2j1l_A RHO-related GTP-binding 98.9 1.4E-09 4.7E-14 108.6 7.9 152 2-176 37-206 (214)
134 2fh5_B SR-beta, signal recogni 98.9 1.8E-08 6.1E-13 99.6 15.9 129 2-149 10-145 (214)
135 3def_A T7I23.11 protein; chlor 98.9 2.9E-09 1E-13 110.4 10.6 124 2-136 39-165 (262)
136 1moz_A ARL1, ADP-ribosylation 98.9 9.2E-10 3.2E-14 105.5 6.3 154 2-178 21-179 (183)
137 3cpj_B GTP-binding protein YPT 98.9 4.7E-09 1.6E-13 105.2 11.2 159 2-180 16-177 (223)
138 3sjy_A Translation initiation 98.9 3E-09 1E-13 117.5 10.7 159 2-181 11-194 (403)
139 3l0i_B RAS-related protein RAB 98.9 5.2E-10 1.8E-14 109.9 3.7 158 2-179 36-196 (199)
140 3ihw_A Centg3; RAS, centaurin, 98.9 1.1E-08 3.6E-13 99.9 12.6 150 2-177 23-178 (184)
141 3t34_A Dynamin-related protein 98.9 5.1E-09 1.7E-13 113.6 11.1 125 1-137 36-218 (360)
142 3t1o_A Gliding protein MGLA; G 98.9 3.6E-09 1.2E-13 102.0 8.6 163 2-177 17-190 (198)
143 1wb1_A Translation elongation 98.9 5E-09 1.7E-13 118.7 11.1 156 2-178 22-188 (482)
144 3llu_A RAS-related GTP-binding 98.9 1.6E-08 5.3E-13 99.2 13.0 159 2-176 23-194 (196)
145 2ged_A SR-beta, signal recogni 98.9 2.2E-08 7.6E-13 97.0 13.9 132 2-151 51-188 (193)
146 3r7w_A Gtpase1, GTP-binding pr 98.9 4.5E-09 1.5E-13 111.9 9.7 179 2-197 6-196 (307)
147 3th5_A RAS-related C3 botulinu 98.4 2.6E-10 8.9E-15 112.3 0.0 153 2-175 33-201 (204)
148 1tq4_A IIGP1, interferon-induc 98.8 1E-08 3.5E-13 114.2 12.4 212 1-250 71-317 (413)
149 1kk1_A EIF2gamma; initiation o 98.8 1.4E-08 4.7E-13 112.3 13.3 160 2-180 13-201 (410)
150 2p67_A LAO/AO transport system 98.8 5.4E-09 1.8E-13 113.1 9.8 148 1-178 58-260 (341)
151 3p32_A Probable GTPase RV1496/ 98.8 1.2E-09 4.2E-14 118.7 4.4 147 2-179 82-284 (355)
152 3gj0_A GTP-binding nuclear pro 98.8 3.6E-09 1.2E-13 105.5 7.4 156 2-178 18-174 (221)
153 2iwr_A Centaurin gamma 1; ANK 98.8 2.1E-08 7.2E-13 95.7 12.4 150 2-177 10-167 (178)
154 3izq_1 HBS1P, elongation facto 98.8 7.8E-09 2.7E-13 120.4 10.4 156 2-169 170-362 (611)
155 3c5c_A RAS-like protein 12; GD 98.8 2.2E-08 7.4E-13 97.6 11.4 156 2-176 24-183 (187)
156 3q3j_B RHO-related GTP-binding 98.8 5.1E-09 1.8E-13 104.7 6.6 156 2-178 30-202 (214)
157 3dpu_A RAB family protein; roc 98.8 1.7E-08 5.8E-13 115.3 11.4 153 2-180 44-209 (535)
158 3tr5_A RF-3, peptide chain rel 98.8 8.8E-09 3E-13 118.0 8.8 114 2-135 16-147 (528)
159 1udx_A The GTP-binding protein 98.8 1.6E-08 5.5E-13 112.7 10.6 162 1-179 159-325 (416)
160 3ec1_A YQEH GTPase; atnos1, at 98.8 5.5E-09 1.9E-13 114.5 6.7 142 2-162 165-314 (369)
161 1pui_A ENGB, probable GTP-bind 98.7 4E-08 1.4E-12 96.6 11.6 161 2-178 29-198 (210)
162 2wkq_A NPH1-1, RAS-related C3 98.7 6.9E-09 2.3E-13 109.2 6.0 156 2-178 158-329 (332)
163 3p26_A Elongation factor 1 alp 98.7 1.6E-08 5.6E-13 114.3 9.0 156 2-170 36-229 (483)
164 2zej_A Dardarin, leucine-rich 98.7 2.6E-08 8.9E-13 96.7 9.1 158 2-179 5-178 (184)
165 3mca_A HBS1, elongation factor 98.7 3.7E-09 1.2E-13 122.8 3.6 158 2-178 180-396 (592)
166 1s0u_A EIF-2-gamma, translatio 98.7 4.6E-08 1.6E-12 108.2 12.1 160 2-180 11-199 (408)
167 2qm8_A GTPase/ATPase; G protei 98.7 1.1E-08 3.9E-13 110.6 6.9 145 1-176 57-258 (337)
168 1m7b_A RND3/RHOE small GTP-bin 98.7 1.1E-08 3.6E-13 99.1 5.8 153 2-175 10-179 (184)
169 3h2y_A GTPase family protein; 98.7 1.7E-09 5.8E-14 118.5 0.2 140 2-160 163-311 (368)
170 2elf_A Protein translation elo 98.7 3.7E-08 1.3E-12 108.0 10.8 143 2-179 24-180 (370)
171 2xex_A Elongation factor G; GT 98.7 4.6E-08 1.6E-12 115.5 11.9 115 2-136 13-141 (693)
172 1nrj_B SR-beta, signal recogni 98.7 1.3E-07 4.5E-12 93.7 12.9 119 2-138 15-136 (218)
173 2c78_A Elongation factor TU-A; 98.7 4.2E-08 1.4E-12 108.3 10.2 115 2-136 14-142 (405)
174 3izy_P Translation initiation 98.7 3.7E-09 1.3E-13 121.4 1.7 154 2-179 7-168 (537)
175 1gwn_A RHO-related GTP-binding 98.6 4.9E-08 1.7E-12 97.2 8.1 153 2-175 31-200 (205)
176 1zun_B Sulfate adenylate trans 98.6 9.2E-08 3.1E-12 106.6 11.0 151 2-171 27-216 (434)
177 1f60_A Elongation factor EEF1A 98.6 4.5E-08 1.5E-12 110.1 6.9 152 2-171 10-204 (458)
178 2ohf_A Protein OLA1, GTP-bindi 98.6 4.5E-08 1.5E-12 108.4 6.6 85 2-93 25-126 (396)
179 1d2e_A Elongation factor TU (E 98.6 7.4E-08 2.5E-12 106.2 8.0 158 2-179 6-195 (397)
180 2ywe_A GTP-binding protein LEP 98.6 3.1E-07 1.1E-11 106.8 13.4 157 2-182 9-187 (600)
181 1dar_A EF-G, elongation factor 98.5 2.6E-07 8.9E-12 109.1 12.7 115 2-136 15-143 (691)
182 1g7s_A Translation initiation 98.5 1.5E-07 5.1E-12 109.4 10.2 154 2-179 8-218 (594)
183 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 5.1E-08 1.7E-12 107.9 5.9 86 2-93 23-125 (392)
184 1yrb_A ATP(GTP)binding protein 98.5 1.8E-07 6E-12 95.7 9.3 165 1-178 16-256 (262)
185 2f9l_A RAB11B, member RAS onco 98.5 5.2E-07 1.8E-11 88.5 12.0 156 2-177 8-166 (199)
186 2qag_C Septin-7; cell cycle, c 98.5 5.1E-07 1.7E-11 100.7 13.3 175 2-186 34-234 (418)
187 1puj_A YLQF, conserved hypothe 98.5 1.3E-07 4.3E-12 100.1 7.6 57 2-64 123-179 (282)
188 4dkx_A RAS-related protein RAB 98.5 4E-07 1.4E-11 92.4 11.0 158 2-181 16-178 (216)
189 1jal_A YCHF protein; nucleotid 98.5 6.2E-08 2.1E-12 106.2 5.3 83 2-94 5-107 (363)
190 3cb4_D GTP-binding protein LEP 98.5 4.1E-07 1.4E-11 105.7 12.3 157 2-182 7-185 (599)
191 3c5h_A Glucocorticoid receptor 98.5 3.2E-07 1.1E-11 94.8 9.9 56 121-177 197-253 (255)
192 1jny_A EF-1-alpha, elongation 98.5 2E-07 7E-12 103.9 8.6 152 2-171 9-205 (435)
193 1r5b_A Eukaryotic peptide chai 98.4 2.2E-07 7.5E-12 104.8 8.0 151 2-171 46-244 (467)
194 3avx_A Elongation factor TS, e 98.4 4.9E-07 1.7E-11 111.0 11.4 156 2-179 299-486 (1289)
195 2qag_A Septin-2, protein NEDD5 98.4 3.5E-07 1.2E-11 99.8 9.2 60 2-61 40-106 (361)
196 1zo1_I IF2, translation initia 98.4 4.7E-08 1.6E-12 111.4 2.0 151 1-175 6-163 (501)
197 1oix_A RAS-related protein RAB 98.4 8.8E-07 3E-11 86.7 9.6 154 2-176 32-189 (191)
198 2h5e_A Peptide chain release f 98.4 1.2E-06 4.1E-11 100.4 12.2 115 2-136 16-148 (529)
199 2wsm_A Hydrogenase expression/ 98.4 5.8E-07 2E-11 89.3 7.7 147 2-180 33-215 (221)
200 3szr_A Interferon-induced GTP- 98.3 9.1E-06 3.1E-10 94.6 18.7 24 1-24 47-70 (608)
201 2qnr_A Septin-2, protein NEDD5 98.3 9.2E-07 3.1E-11 94.1 9.1 162 2-174 21-209 (301)
202 2rdo_7 EF-G, elongation factor 98.3 2.5E-06 8.6E-11 100.9 12.6 112 2-135 13-147 (704)
203 2dy1_A Elongation factor G; tr 98.3 2.5E-06 8.5E-11 100.3 12.3 112 2-135 12-139 (665)
204 2dby_A GTP-binding protein; GD 98.3 6.9E-07 2.4E-11 98.0 6.9 85 2-94 4-110 (368)
205 3sop_A Neuronal-specific septi 98.3 2.7E-06 9.1E-11 89.4 10.8 130 2-141 5-159 (270)
206 2qag_B Septin-6, protein NEDD5 98.1 4E-06 1.4E-10 93.7 7.7 60 2-62 45-107 (427)
207 3cnl_A YLQF, putative uncharac 98.0 2.3E-06 7.8E-11 89.5 4.2 57 2-64 102-158 (262)
208 1n0u_A EF-2, elongation factor 97.9 1.6E-05 5.3E-10 96.0 7.5 114 2-135 22-163 (842)
209 2j37_W Signal recognition part 97.8 3.7E-05 1.3E-09 87.7 10.0 119 1-137 103-255 (504)
210 2hf9_A Probable hydrogenase ni 97.8 1.3E-05 4.3E-10 79.9 4.9 55 123-177 165-222 (226)
211 2v3c_C SRP54, signal recogniti 97.8 4.6E-05 1.6E-09 85.3 8.7 119 1-136 101-252 (432)
212 3r7w_B Gtpase2, GTP-binding pr 97.5 0.0022 7.6E-08 69.4 16.5 174 2-200 2-188 (331)
213 3j25_A Tetracycline resistance 97.4 0.00043 1.5E-08 81.0 11.4 114 2-135 5-132 (638)
214 3vqt_A RF-3, peptide chain rel 97.4 0.00082 2.8E-08 77.3 12.9 113 2-135 34-165 (548)
215 3dm5_A SRP54, signal recogniti 97.3 0.00091 3.1E-08 75.1 11.8 120 1-137 102-254 (443)
216 2rcn_A Probable GTPase ENGC; Y 97.2 0.00015 5.2E-09 79.3 3.8 58 1-61 217-279 (358)
217 1t9h_A YLOQ, probable GTPase E 97.1 0.00013 4.3E-09 78.3 2.0 59 1-63 175-237 (307)
218 1j8m_F SRP54, signal recogniti 97.1 0.002 6.8E-08 68.4 10.9 121 1-136 100-253 (297)
219 3kl4_A SRP54, signal recogniti 96.9 0.002 6.9E-08 72.1 9.2 121 1-136 99-252 (433)
220 1u0l_A Probable GTPase ENGC; p 96.9 0.00081 2.8E-08 71.2 5.4 60 1-63 171-234 (301)
221 2yv5_A YJEQ protein; hydrolase 96.8 0.0012 4.1E-08 70.1 6.4 58 1-62 167-228 (302)
222 4fn5_A EF-G 1, elongation fact 96.5 0.019 6.4E-07 67.9 13.9 111 2-135 16-150 (709)
223 2xxa_A Signal recognition part 96.2 0.013 4.3E-07 65.6 9.5 29 2-30 103-138 (433)
224 4gp7_A Metallophosphoesterase; 95.6 0.0047 1.6E-07 59.5 2.5 21 1-21 11-31 (171)
225 3c8u_A Fructokinase; YP_612366 95.6 0.0041 1.4E-07 61.6 2.1 22 1-22 24-45 (208)
226 3tr0_A Guanylate kinase, GMP k 95.4 0.0051 1.8E-07 59.9 2.2 22 1-22 9-30 (205)
227 3ney_A 55 kDa erythrocyte memb 95.4 0.0043 1.5E-07 62.3 1.6 55 1-60 21-76 (197)
228 1lvg_A Guanylate kinase, GMP k 95.4 0.0062 2.1E-07 60.2 2.7 22 1-22 6-27 (198)
229 1kgd_A CASK, peripheral plasma 95.4 0.0053 1.8E-07 59.5 2.2 22 1-22 7-28 (180)
230 1znw_A Guanylate kinase, GMP k 95.4 0.0053 1.8E-07 60.8 2.1 22 1-22 22-43 (207)
231 1ye8_A Protein THEP1, hypothet 95.3 0.0067 2.3E-07 59.4 2.5 21 2-22 3-23 (178)
232 3tif_A Uncharacterized ABC tra 95.1 0.0076 2.6E-07 61.6 2.5 22 1-22 33-54 (235)
233 1z6g_A Guanylate kinase; struc 95.1 0.0082 2.8E-07 60.3 2.6 22 1-22 25-46 (218)
234 2pcj_A ABC transporter, lipopr 95.1 0.0074 2.5E-07 61.2 2.3 22 1-22 32-53 (224)
235 1zp6_A Hypothetical protein AT 95.1 0.0079 2.7E-07 58.0 2.4 22 1-22 11-32 (191)
236 1sgw_A Putative ABC transporte 95.1 0.0095 3.2E-07 60.3 3.0 22 1-22 37-58 (214)
237 1g6h_A High-affinity branched- 95.0 0.0091 3.1E-07 61.8 2.5 22 1-22 35-56 (257)
238 2onk_A Molybdate/tungstate ABC 94.9 0.0098 3.4E-07 61.1 2.6 22 1-22 26-47 (240)
239 4g1u_C Hemin import ATP-bindin 94.9 0.01 3.5E-07 61.9 2.6 22 1-22 39-60 (266)
240 1mv5_A LMRA, multidrug resista 94.9 0.01 3.5E-07 60.9 2.5 22 1-22 30-51 (243)
241 1ji0_A ABC transporter; ATP bi 94.8 0.01 3.6E-07 60.7 2.5 22 1-22 34-55 (240)
242 2cbz_A Multidrug resistance-as 94.8 0.011 3.6E-07 60.6 2.5 22 1-22 33-54 (237)
243 1b0u_A Histidine permease; ABC 94.8 0.011 3.6E-07 61.6 2.5 22 1-22 34-55 (262)
244 2pze_A Cystic fibrosis transme 94.8 0.011 3.8E-07 60.1 2.5 22 1-22 36-57 (229)
245 3gfo_A Cobalt import ATP-bindi 94.8 0.011 3.8E-07 62.1 2.5 22 1-22 36-57 (275)
246 1s96_A Guanylate kinase, GMP k 94.8 0.01 3.6E-07 60.0 2.2 22 1-22 18-39 (219)
247 3a00_A Guanylate kinase, GMP k 94.7 0.012 4.3E-07 57.1 2.6 22 1-22 3-24 (186)
248 2px0_A Flagellar biosynthesis 94.7 0.012 4.1E-07 62.4 2.6 29 1-29 107-142 (296)
249 2qi9_C Vitamin B12 import ATP- 94.7 0.012 4E-07 60.9 2.5 22 1-22 28-49 (249)
250 2ff7_A Alpha-hemolysin translo 94.7 0.012 4.1E-07 60.7 2.5 22 1-22 37-58 (247)
251 3asz_A Uridine kinase; cytidin 94.6 0.01 3.5E-07 58.3 1.8 22 1-22 8-29 (211)
252 2d2e_A SUFC protein; ABC-ATPas 94.6 0.013 4.3E-07 60.5 2.6 22 1-22 31-52 (250)
253 1vpl_A ABC transporter, ATP-bi 94.6 0.013 4.3E-07 61.0 2.5 22 1-22 43-64 (256)
254 3b85_A Phosphate starvation-in 94.6 0.01 3.6E-07 59.6 1.8 22 1-22 24-45 (208)
255 2olj_A Amino acid ABC transpor 94.6 0.013 4.4E-07 61.1 2.5 22 1-22 52-73 (263)
256 2nq2_C Hypothetical ABC transp 94.6 0.013 4.5E-07 60.6 2.5 22 1-22 33-54 (253)
257 2zu0_C Probable ATP-dependent 94.6 0.014 4.7E-07 60.9 2.6 22 1-22 48-69 (267)
258 2ixe_A Antigen peptide transpo 94.5 0.013 4.6E-07 61.2 2.5 22 1-22 47-68 (271)
259 1kag_A SKI, shikimate kinase I 94.5 0.016 5.5E-07 54.8 2.7 22 1-22 6-27 (173)
260 2j41_A Guanylate kinase; GMP, 94.5 0.013 4.6E-07 56.9 2.2 23 1-23 8-30 (207)
261 2v9p_A Replication protein E1; 94.5 0.013 4.3E-07 62.7 2.1 22 1-22 128-149 (305)
262 2ghi_A Transport protein; mult 94.4 0.015 5E-07 60.4 2.5 22 1-22 48-69 (260)
263 4a74_A DNA repair and recombin 94.4 0.012 4.2E-07 57.9 1.8 22 1-22 27-48 (231)
264 2yz2_A Putative ABC transporte 94.4 0.015 5E-07 60.6 2.5 22 1-22 35-56 (266)
265 2qor_A Guanylate kinase; phosp 94.4 0.015 5.3E-07 57.2 2.4 36 1-41 14-52 (204)
266 2ihy_A ABC transporter, ATP-bi 94.4 0.016 5.4E-07 61.0 2.5 22 1-22 49-70 (279)
267 2bbw_A Adenylate kinase 4, AK4 94.4 0.017 5.7E-07 58.6 2.6 23 1-23 29-54 (246)
268 3aez_A Pantothenate kinase; tr 94.3 0.015 5.2E-07 62.1 2.2 22 1-22 92-113 (312)
269 2eyu_A Twitching motility prot 94.2 0.016 5.4E-07 60.3 2.2 22 1-22 27-48 (261)
270 2i3b_A HCR-ntpase, human cance 94.1 0.022 7.5E-07 56.4 2.8 22 1-22 3-24 (189)
271 2ehv_A Hypothetical protein PH 94.0 0.018 6.3E-07 57.4 2.2 21 1-21 32-52 (251)
272 4eun_A Thermoresistant glucoki 94.0 0.02 6.7E-07 56.3 2.2 21 1-21 31-51 (200)
273 1ex7_A Guanylate kinase; subst 94.0 0.022 7.6E-07 56.5 2.5 35 2-41 4-41 (186)
274 2qt1_A Nicotinamide riboside k 93.9 0.028 9.5E-07 55.2 3.0 28 1-28 23-52 (207)
275 2bdt_A BH3686; alpha-beta prot 93.8 0.021 7.3E-07 55.1 2.1 21 1-21 4-24 (189)
276 2pjz_A Hypothetical protein ST 93.8 0.023 8E-07 59.2 2.5 23 1-23 32-54 (263)
277 3nh6_A ATP-binding cassette SU 93.8 0.016 5.4E-07 61.9 1.1 22 1-22 82-103 (306)
278 2bbs_A Cystic fibrosis transme 93.7 0.022 7.5E-07 60.3 2.2 22 1-22 66-87 (290)
279 3tau_A Guanylate kinase, GMP k 93.7 0.023 8E-07 56.3 2.2 22 1-22 10-31 (208)
280 3lnc_A Guanylate kinase, GMP k 93.7 0.02 6.7E-07 57.5 1.5 22 1-22 29-51 (231)
281 1knq_A Gluconate kinase; ALFA/ 93.6 0.025 8.6E-07 53.8 2.2 21 1-21 10-30 (175)
282 2pt7_A CAG-ALFA; ATPase, prote 93.5 0.029 9.8E-07 60.3 2.6 22 1-22 173-194 (330)
283 1jjv_A Dephospho-COA kinase; P 93.5 0.038 1.3E-06 54.1 3.2 27 2-28 5-31 (206)
284 2if2_A Dephospho-COA kinase; a 93.4 0.035 1.2E-06 54.1 2.9 27 2-28 4-30 (204)
285 1z47_A CYSA, putative ABC-tran 93.4 0.03 1E-06 61.1 2.6 22 1-22 43-64 (355)
286 4dzz_A Plasmid partitioning pr 93.4 0.53 1.8E-05 45.3 11.2 113 2-135 4-143 (206)
287 3tui_C Methionine import ATP-b 93.4 0.031 1.1E-06 61.2 2.6 22 1-22 56-77 (366)
288 1htw_A HI0065; nucleotide-bind 93.3 0.029 1E-06 54.0 2.1 23 1-23 35-57 (158)
289 2jeo_A Uridine-cytidine kinase 93.3 0.028 9.6E-07 57.1 2.1 22 1-22 27-48 (245)
290 3lw7_A Adenylate kinase relate 93.3 0.034 1.2E-06 51.8 2.5 19 1-19 3-21 (179)
291 2yyz_A Sugar ABC transporter, 93.3 0.032 1.1E-06 60.9 2.6 22 1-22 31-52 (359)
292 1g29_1 MALK, maltose transport 93.2 0.033 1.1E-06 61.1 2.6 22 1-22 31-52 (372)
293 3jvv_A Twitching mobility prot 93.2 0.029 1E-06 61.0 2.2 21 1-21 125-145 (356)
294 2gza_A Type IV secretion syste 93.2 0.035 1.2E-06 60.2 2.8 22 1-22 177-198 (361)
295 3fvq_A Fe(3+) IONS import ATP- 93.2 0.031 1.1E-06 61.1 2.3 22 1-22 32-53 (359)
296 1np6_A Molybdopterin-guanine d 93.2 0.032 1.1E-06 54.6 2.2 22 1-22 8-29 (174)
297 2ffh_A Protein (FFH); SRP54, s 93.2 0.29 9.9E-06 54.6 10.1 29 1-29 100-134 (425)
298 3cwq_A Para family chromosome 93.2 0.42 1.4E-05 47.3 10.4 109 2-135 3-133 (209)
299 3rlf_A Maltose/maltodextrin im 93.2 0.035 1.2E-06 61.1 2.6 22 1-22 31-52 (381)
300 2it1_A 362AA long hypothetical 93.2 0.035 1.2E-06 60.7 2.6 22 1-22 31-52 (362)
301 1v43_A Sugar-binding transport 93.1 0.037 1.2E-06 60.7 2.6 22 1-22 39-60 (372)
302 1rj9_A FTSY, signal recognitio 93.0 0.033 1.1E-06 59.3 2.1 21 1-21 104-124 (304)
303 1sq5_A Pantothenate kinase; P- 93.0 0.031 1.1E-06 59.2 1.9 22 1-22 82-103 (308)
304 3kb2_A SPBC2 prophage-derived 93.0 0.039 1.3E-06 51.7 2.3 21 1-21 3-23 (173)
305 1cke_A CK, MSSA, protein (cyti 92.9 0.041 1.4E-06 54.4 2.5 27 2-28 8-35 (227)
306 3uie_A Adenylyl-sulfate kinase 92.9 0.037 1.3E-06 54.3 2.1 22 1-22 27-48 (200)
307 3ec2_A DNA replication protein 92.7 0.042 1.4E-06 52.6 2.3 21 2-22 41-61 (180)
308 3gd7_A Fusion complex of cysti 92.7 0.041 1.4E-06 60.7 2.3 22 1-22 49-70 (390)
309 3d31_A Sulfate/molybdate ABC t 92.6 0.031 1.1E-06 60.7 1.3 22 1-22 28-49 (348)
310 1ly1_A Polynucleotide kinase; 92.6 0.057 2E-06 51.0 3.0 28 1-28 4-33 (181)
311 1p9r_A General secretion pathw 92.6 0.041 1.4E-06 61.2 2.2 22 1-22 169-190 (418)
312 1lw7_A Transcriptional regulat 92.5 0.038 1.3E-06 59.6 1.9 21 2-22 173-193 (365)
313 2ewv_A Twitching motility prot 92.5 0.041 1.4E-06 60.1 2.1 21 1-21 138-158 (372)
314 2w0m_A SSO2452; RECA, SSPF, un 92.5 0.044 1.5E-06 53.7 2.1 21 1-21 25-45 (235)
315 1cr0_A DNA primase/helicase; R 92.5 0.039 1.3E-06 57.3 1.8 21 1-21 37-57 (296)
316 1rz3_A Hypothetical protein rb 92.4 0.043 1.5E-06 54.0 1.9 21 1-21 24-44 (201)
317 4e22_A Cytidylate kinase; P-lo 92.4 0.056 1.9E-06 55.4 2.7 24 1-24 29-55 (252)
318 3e70_C DPA, signal recognition 92.3 0.047 1.6E-06 58.8 2.2 22 1-22 131-152 (328)
319 3b9q_A Chloroplast SRP recepto 92.3 0.048 1.6E-06 57.9 2.2 22 1-22 102-123 (302)
320 1oxx_K GLCV, glucose, ABC tran 92.3 0.029 1E-06 61.0 0.5 22 1-22 33-54 (353)
321 2f1r_A Molybdopterin-guanine d 92.3 0.024 8.2E-07 55.3 -0.2 22 1-22 4-25 (171)
322 2jaq_A Deoxyguanosine kinase; 92.2 0.057 2E-06 52.0 2.5 21 1-21 2-22 (205)
323 3t61_A Gluconokinase; PSI-biol 92.1 0.064 2.2E-06 52.3 2.7 21 1-21 20-40 (202)
324 1nij_A Hypothetical protein YJ 92.1 0.076 2.6E-06 56.5 3.4 22 1-22 6-27 (318)
325 1nks_A Adenylate kinase; therm 92.1 0.057 1.9E-06 51.5 2.2 21 1-21 3-23 (194)
326 3tqc_A Pantothenate kinase; bi 92.0 0.054 1.9E-06 58.2 2.2 21 1-21 94-114 (321)
327 2vp4_A Deoxynucleoside kinase; 92.0 0.048 1.6E-06 54.9 1.7 22 1-22 22-43 (230)
328 2kjq_A DNAA-related protein; s 92.0 0.055 1.9E-06 51.3 2.0 21 2-22 39-59 (149)
329 3ozx_A RNAse L inhibitor; ATP 91.9 0.059 2E-06 61.8 2.5 22 1-22 27-48 (538)
330 1kht_A Adenylate kinase; phosp 91.9 0.067 2.3E-06 51.0 2.5 21 1-21 5-25 (192)
331 2npi_A Protein CLP1; CLP1-PCF1 91.6 0.064 2.2E-06 60.4 2.4 22 1-22 140-161 (460)
332 1vht_A Dephospho-COA kinase; s 91.6 0.084 2.9E-06 52.1 2.9 28 1-28 6-33 (218)
333 3j16_B RLI1P; ribosome recycli 91.5 0.072 2.5E-06 62.0 2.6 22 1-22 105-126 (608)
334 2oap_1 GSPE-2, type II secreti 91.5 0.075 2.5E-06 60.6 2.7 22 1-22 262-283 (511)
335 1yqt_A RNAse L inhibitor; ATP- 91.4 0.076 2.6E-06 60.8 2.6 22 1-22 49-70 (538)
336 1u0l_A Probable GTPase ENGC; p 91.3 0.31 1.1E-05 51.2 7.1 118 35-173 48-167 (301)
337 2cvh_A DNA repair and recombin 91.2 0.077 2.6E-06 51.8 2.1 21 1-21 22-42 (220)
338 2og2_A Putative signal recogni 91.1 0.077 2.6E-06 57.9 2.2 21 1-21 159-179 (359)
339 2rhm_A Putative kinase; P-loop 91.0 0.081 2.8E-06 50.6 2.1 20 1-20 7-26 (193)
340 2plr_A DTMP kinase, probable t 91.0 0.09 3.1E-06 51.0 2.4 21 1-21 6-26 (213)
341 3cm0_A Adenylate kinase; ATP-b 91.0 0.094 3.2E-06 50.1 2.5 20 1-20 6-25 (186)
342 1gtv_A TMK, thymidylate kinase 91.0 0.039 1.3E-06 53.9 -0.3 21 1-21 2-22 (214)
343 1odf_A YGR205W, hypothetical 3 90.9 0.082 2.8E-06 55.8 2.2 21 1-21 33-53 (290)
344 1n0w_A DNA repair protein RAD5 90.9 0.087 3E-06 52.3 2.2 22 1-22 26-47 (243)
345 2z0h_A DTMP kinase, thymidylat 90.9 0.095 3.2E-06 50.3 2.4 21 1-21 2-22 (197)
346 3b5x_A Lipid A export ATP-bind 90.8 0.093 3.2E-06 60.4 2.7 22 1-22 371-392 (582)
347 3ozx_A RNAse L inhibitor; ATP 90.8 0.09 3.1E-06 60.3 2.5 22 1-22 296-317 (538)
348 1yqt_A RNAse L inhibitor; ATP- 90.8 0.094 3.2E-06 60.1 2.6 22 1-22 314-335 (538)
349 3bk7_A ABC transporter ATP-bin 90.7 0.091 3.1E-06 61.1 2.5 22 1-22 119-140 (607)
350 2yhs_A FTSY, cell division pro 90.7 0.085 2.9E-06 60.0 2.2 21 1-21 295-315 (503)
351 3euj_A Chromosome partition pr 90.6 0.088 3E-06 59.7 2.2 22 1-22 31-52 (483)
352 3b60_A Lipid A export ATP-bind 90.6 0.088 3E-06 60.6 2.2 22 1-22 371-392 (582)
353 1ixz_A ATP-dependent metallopr 90.6 0.1 3.6E-06 52.7 2.5 21 2-22 52-72 (254)
354 2yl4_A ATP-binding cassette SU 90.6 0.083 2.8E-06 61.0 2.0 22 1-22 372-393 (595)
355 3qf4_B Uncharacterized ABC tra 90.6 0.087 3E-06 60.9 2.1 22 1-22 383-404 (598)
356 2x8a_A Nuclear valosin-contain 90.5 0.11 3.7E-06 54.1 2.6 20 2-21 47-66 (274)
357 2pez_A Bifunctional 3'-phospho 90.4 0.11 3.8E-06 49.6 2.4 21 1-21 7-27 (179)
358 3vaa_A Shikimate kinase, SK; s 90.4 0.11 3.8E-06 50.7 2.5 21 1-21 27-47 (199)
359 2v54_A DTMP kinase, thymidylat 90.4 0.11 3.8E-06 50.2 2.4 22 1-22 6-27 (204)
360 3bk7_A ABC transporter ATP-bin 90.4 0.11 3.6E-06 60.6 2.6 22 1-22 384-405 (607)
361 1qhx_A CPT, protein (chloramph 90.3 0.11 3.9E-06 49.1 2.4 20 2-21 6-25 (178)
362 1nlf_A Regulatory protein REPA 90.2 0.095 3.2E-06 54.1 1.8 21 1-21 32-52 (279)
363 4a82_A Cystic fibrosis transme 90.1 0.083 2.8E-06 60.8 1.5 22 1-22 369-390 (578)
364 1tev_A UMP-CMP kinase; ploop, 90.1 0.12 4.2E-06 49.2 2.4 20 1-20 5-24 (196)
365 2pbr_A DTMP kinase, thymidylat 89.9 0.13 4.4E-06 49.1 2.4 21 1-21 2-22 (195)
366 3iij_A Coilin-interacting nucl 89.9 0.15 5.2E-06 48.6 2.9 20 1-20 13-32 (180)
367 1e6c_A Shikimate kinase; phosp 89.7 0.16 5.6E-06 47.7 3.0 21 1-21 4-24 (173)
368 2yvu_A Probable adenylyl-sulfa 89.7 0.14 4.7E-06 49.3 2.4 21 1-21 15-35 (186)
369 3qf4_A ABC transporter, ATP-bi 89.7 0.097 3.3E-06 60.5 1.6 22 1-22 371-392 (587)
370 2wwf_A Thymidilate kinase, put 89.7 0.12 4.2E-06 50.2 2.1 20 1-20 12-31 (212)
371 1in4_A RUVB, holliday junction 89.7 0.14 4.8E-06 54.5 2.7 22 1-22 53-74 (334)
372 1xjc_A MOBB protein homolog; s 89.6 0.13 4.4E-06 50.3 2.2 21 1-21 6-26 (169)
373 1uf9_A TT1252 protein; P-loop, 89.6 0.16 5.6E-06 48.9 2.9 28 1-28 10-37 (203)
374 3kta_A Chromosome segregation 89.5 0.12 4.2E-06 49.2 1.9 21 1-21 28-48 (182)
375 3j16_B RLI1P; ribosome recycli 89.4 0.14 4.8E-06 59.6 2.7 21 2-22 381-401 (608)
376 1iy2_A ATP-dependent metallopr 89.4 0.15 5.1E-06 52.5 2.5 21 2-22 76-96 (278)
377 2c95_A Adenylate kinase 1; tra 89.3 0.14 4.7E-06 49.1 2.1 20 1-20 11-30 (196)
378 1nn5_A Similar to deoxythymidy 89.3 0.14 4.6E-06 50.0 2.1 20 1-20 11-30 (215)
379 1svm_A Large T antigen; AAA+ f 89.2 0.13 4.6E-06 56.3 2.1 21 1-21 171-191 (377)
380 1via_A Shikimate kinase; struc 89.2 0.18 6.3E-06 47.9 2.8 20 2-21 7-26 (175)
381 4eaq_A DTMP kinase, thymidylat 89.1 0.16 5.4E-06 51.5 2.5 21 1-21 28-48 (229)
382 2bwj_A Adenylate kinase 5; pho 89.1 0.15 5.1E-06 49.0 2.1 21 1-21 14-34 (199)
383 3fb4_A Adenylate kinase; psych 88.9 0.18 6.3E-06 49.4 2.7 19 2-20 3-21 (216)
384 1y63_A LMAJ004144AAA protein; 88.9 0.18 6.1E-06 48.7 2.5 27 2-28 13-41 (184)
385 1zd8_A GTP:AMP phosphotransfer 88.8 0.15 5.3E-06 50.7 2.1 20 1-20 9-28 (227)
386 2obl_A ESCN; ATPase, hydrolase 88.8 0.14 4.8E-06 55.4 1.9 22 1-22 73-94 (347)
387 2dpy_A FLII, flagellum-specifi 88.5 0.15 5E-06 57.1 1.9 22 1-22 159-180 (438)
388 1m7g_A Adenylylsulfate kinase; 88.4 0.17 5.9E-06 49.8 2.1 21 1-21 27-47 (211)
389 1zak_A Adenylate kinase; ATP:A 88.4 0.2 6.9E-06 49.6 2.6 20 1-20 7-26 (222)
390 2cdn_A Adenylate kinase; phosp 88.3 0.19 6.7E-06 48.8 2.4 20 1-20 22-41 (201)
391 1qf9_A UMP/CMP kinase, protein 88.3 0.18 6.1E-06 47.9 2.1 21 1-21 8-28 (194)
392 3dl0_A Adenylate kinase; phosp 88.1 0.23 7.7E-06 48.8 2.7 19 2-20 3-21 (216)
393 2pt5_A Shikimate kinase, SK; a 88.0 0.25 8.5E-06 46.3 2.9 20 2-21 3-22 (168)
394 2vli_A Antibiotic resistance p 88.0 0.16 5.6E-06 48.1 1.6 20 1-20 7-26 (183)
395 3a4m_A L-seryl-tRNA(SEC) kinas 87.9 0.21 7E-06 51.3 2.4 21 1-21 6-26 (260)
396 1qhl_A Protein (cell division 87.9 0.049 1.7E-06 55.6 -2.3 21 2-22 30-50 (227)
397 2xb4_A Adenylate kinase; ATP-b 87.9 0.22 7.4E-06 49.8 2.5 20 1-20 2-21 (223)
398 1ukz_A Uridylate kinase; trans 87.7 0.22 7.5E-06 48.3 2.4 20 1-20 17-36 (203)
399 1pzn_A RAD51, DNA repair and r 87.7 0.18 6E-06 54.5 1.8 22 1-22 133-154 (349)
400 3trf_A Shikimate kinase, SK; a 87.7 0.25 8.6E-06 47.1 2.7 19 2-20 8-26 (185)
401 1aky_A Adenylate kinase; ATP:A 87.6 0.23 7.7E-06 49.1 2.4 20 1-20 6-25 (220)
402 3nwj_A ATSK2; P loop, shikimat 87.6 0.24 8.3E-06 51.1 2.7 21 1-21 50-70 (250)
403 2iw3_A Elongation factor 3A; a 87.2 0.15 5.3E-06 62.3 1.1 22 1-22 701-722 (986)
404 1hqc_A RUVB; extended AAA-ATPa 87.1 0.28 9.4E-06 51.0 2.8 26 2-27 41-69 (324)
405 2ze6_A Isopentenyl transferase 86.9 0.24 8.1E-06 50.8 2.2 20 2-21 4-23 (253)
406 2iyv_A Shikimate kinase, SK; t 86.7 0.32 1.1E-05 46.4 2.8 20 1-20 4-23 (184)
407 3ux8_A Excinuclease ABC, A sub 86.4 0.2 6.9E-06 58.6 1.5 20 1-20 350-369 (670)
408 1jbk_A CLPB protein; beta barr 86.4 0.36 1.2E-05 45.0 2.9 21 2-22 46-66 (195)
409 1f2t_A RAD50 ABC-ATPase; DNA d 86.3 0.32 1.1E-05 45.9 2.5 19 2-20 26-44 (149)
410 2f6r_A COA synthase, bifunctio 86.1 0.25 8.6E-06 51.5 1.9 28 1-28 77-104 (281)
411 1e4v_A Adenylate kinase; trans 86.1 0.31 1.1E-05 48.0 2.4 19 2-20 3-21 (214)
412 3r20_A Cytidylate kinase; stru 86.1 0.3 1E-05 50.0 2.4 19 2-20 12-30 (233)
413 1vma_A Cell division protein F 85.9 0.28 9.6E-06 52.2 2.2 21 1-21 106-126 (306)
414 3be4_A Adenylate kinase; malar 85.7 0.3 1E-05 48.4 2.1 20 1-20 7-26 (217)
415 2p5t_B PEZT; postsegregational 85.7 0.27 9.1E-06 50.2 1.8 20 2-21 35-54 (253)
416 2dr3_A UPF0273 protein PH0284; 85.6 0.32 1.1E-05 48.2 2.2 20 1-20 25-44 (247)
417 4f4c_A Multidrug resistance pr 85.4 0.27 9.3E-06 62.1 2.0 22 1-22 1107-1128(1321)
418 2grj_A Dephospho-COA kinase; T 85.3 0.32 1.1E-05 48.1 2.1 28 1-28 14-42 (192)
419 3ake_A Cytidylate kinase; CMP 85.2 0.36 1.2E-05 46.6 2.4 20 2-21 5-24 (208)
420 1gvn_B Zeta; postsegregational 84.9 0.36 1.2E-05 50.5 2.4 20 2-21 36-55 (287)
421 1ltq_A Polynucleotide kinase; 84.8 0.37 1.3E-05 49.8 2.4 28 1-28 4-33 (301)
422 1ak2_A Adenylate kinase isoenz 84.8 0.38 1.3E-05 48.1 2.4 20 1-20 18-37 (233)
423 2iw3_A Elongation factor 3A; a 84.7 0.32 1.1E-05 59.5 2.1 23 1-23 463-485 (986)
424 3qf7_A RAD50; ABC-ATPase, ATPa 84.5 0.4 1.4E-05 52.0 2.5 19 2-20 26-44 (365)
425 1tf7_A KAIC; homohexamer, hexa 84.4 0.32 1.1E-05 55.2 1.8 19 1-19 41-59 (525)
426 1lv7_A FTSH; alpha/beta domain 83.9 0.46 1.6E-05 48.0 2.6 20 2-21 48-67 (257)
427 1q3t_A Cytidylate kinase; nucl 83.9 0.45 1.5E-05 47.7 2.4 20 2-21 19-38 (236)
428 1uj2_A Uridine-cytidine kinase 83.8 0.44 1.5E-05 48.4 2.4 21 1-21 24-44 (252)
429 3g5u_A MCG1178, multidrug resi 83.8 0.37 1.2E-05 60.8 2.1 22 1-22 418-439 (1284)
430 3kjh_A CO dehydrogenase/acetyl 83.8 2.4 8.3E-05 41.7 7.8 28 2-29 3-36 (254)
431 1p5z_B DCK, deoxycytidine kina 83.8 0.32 1.1E-05 49.6 1.4 21 1-21 26-46 (263)
432 1w1w_A Structural maintenance 83.7 0.39 1.3E-05 52.9 2.1 22 1-22 28-49 (430)
433 1zuh_A Shikimate kinase; alpha 83.6 0.54 1.9E-05 44.1 2.8 19 2-20 10-28 (168)
434 2qby_A CDC6 homolog 1, cell di 83.6 0.44 1.5E-05 50.1 2.4 22 1-22 47-68 (386)
435 3tlx_A Adenylate kinase 2; str 83.2 0.49 1.7E-05 48.0 2.4 20 2-21 32-51 (243)
436 4f4c_A Multidrug resistance pr 83.0 0.42 1.4E-05 60.4 2.2 22 1-22 446-467 (1321)
437 3lda_A DNA repair protein RAD5 83.0 0.45 1.5E-05 52.6 2.2 20 1-20 180-199 (400)
438 4aby_A DNA repair protein RECN 82.9 0.16 5.5E-06 55.2 -1.4 21 1-21 62-82 (415)
439 1tf7_A KAIC; homohexamer, hexa 82.8 0.41 1.4E-05 54.3 1.9 22 1-22 283-304 (525)
440 3bos_A Putative DNA replicatio 82.7 0.59 2E-05 45.7 2.7 20 2-21 55-74 (242)
441 2w58_A DNAI, primosome compone 82.4 0.57 2E-05 45.3 2.5 20 2-21 57-76 (202)
442 3qks_A DNA double-strand break 82.2 0.59 2E-05 46.2 2.5 19 2-20 26-44 (203)
443 3end_A Light-independent proto 82.2 4.3 0.00015 42.0 9.3 28 2-29 44-77 (307)
444 4ag6_A VIRB4 ATPase, type IV s 82.1 0.59 2E-05 50.6 2.7 22 2-23 38-59 (392)
445 3g5u_A MCG1178, multidrug resi 82.1 0.51 1.7E-05 59.5 2.5 22 1-22 1061-1082(1284)
446 2ocp_A DGK, deoxyguanosine kin 82.1 0.52 1.8E-05 47.3 2.1 21 1-21 4-24 (241)
447 3cr8_A Sulfate adenylyltranfer 81.9 0.32 1.1E-05 56.0 0.5 22 1-22 371-392 (552)
448 1fnn_A CDC6P, cell division co 81.5 0.62 2.1E-05 49.3 2.5 21 2-22 47-67 (389)
449 2p65_A Hypothetical protein PF 81.3 0.59 2E-05 43.6 2.1 21 2-22 46-66 (187)
450 3b9p_A CG5977-PA, isoform A; A 81.0 2.9 0.0001 42.8 7.4 20 2-21 57-76 (297)
451 1ewq_A DNA mismatch repair pro 80.7 0.58 2E-05 55.9 2.1 23 1-23 578-600 (765)
452 1wb9_A DNA mismatch repair pro 80.7 0.58 2E-05 56.1 2.2 22 1-22 609-630 (800)
453 4edh_A DTMP kinase, thymidylat 80.7 0.68 2.3E-05 46.4 2.4 20 1-20 8-27 (213)
454 2h92_A Cytidylate kinase; ross 80.6 0.94 3.2E-05 44.3 3.3 28 1-28 5-33 (219)
455 1njg_A DNA polymerase III subu 80.4 0.84 2.9E-05 43.9 2.9 20 2-21 48-67 (250)
456 3co5_A Putative two-component 80.1 0.46 1.6E-05 44.0 0.9 21 2-22 30-50 (143)
457 3pfi_A Holliday junction ATP-d 80.1 0.85 2.9E-05 47.8 3.0 20 2-21 58-77 (338)
458 3qkt_A DNA double-strand break 80.0 0.74 2.5E-05 49.1 2.5 19 2-20 26-44 (339)
459 2o5v_A DNA replication and rep 79.9 0.67 2.3E-05 50.4 2.2 22 1-22 28-49 (359)
460 3v9p_A DTMP kinase, thymidylat 79.8 0.63 2.2E-05 47.4 1.8 21 1-21 27-47 (227)
461 1sxj_E Activator 1 40 kDa subu 79.3 0.69 2.3E-05 48.7 2.0 20 2-21 39-58 (354)
462 2chg_A Replication factor C sm 79.2 0.96 3.3E-05 43.1 2.8 20 2-21 41-60 (226)
463 3hr8_A Protein RECA; alpha and 79.1 0.67 2.3E-05 50.4 1.8 21 1-21 63-83 (356)
464 2qmh_A HPR kinase/phosphorylas 79.1 1.2 4.1E-05 44.9 3.6 35 2-38 37-71 (205)
465 1zu4_A FTSY; GTPase, signal re 79.0 0.74 2.5E-05 49.1 2.1 29 1-29 107-141 (320)
466 3zvl_A Bifunctional polynucleo 79.0 0.8 2.7E-05 50.5 2.4 21 1-21 260-280 (416)
467 1e69_A Chromosome segregation 78.6 0.77 2.6E-05 48.5 2.1 22 1-22 26-47 (322)
468 3lv8_A DTMP kinase, thymidylat 78.4 0.82 2.8E-05 46.8 2.1 21 1-21 29-49 (236)
469 3bgw_A DNAB-like replicative h 78.2 2.9 9.9E-05 46.6 6.7 37 1-37 199-241 (444)
470 4tmk_A Protein (thymidylate ki 77.7 0.9 3.1E-05 45.6 2.2 21 1-21 5-25 (213)
471 1l8q_A Chromosomal replication 77.7 0.94 3.2E-05 47.4 2.4 21 2-22 40-60 (324)
472 4hlc_A DTMP kinase, thymidylat 77.5 1 3.5E-05 44.9 2.5 21 1-21 4-24 (205)
473 3ux8_A Excinuclease ABC, A sub 77.3 0.8 2.8E-05 53.5 1.9 16 1-16 46-61 (670)
474 2ph1_A Nucleotide-binding prot 76.9 8.3 0.00028 39.0 9.2 28 2-29 21-55 (262)
475 1ls1_A Signal recognition part 76.6 0.99 3.4E-05 47.4 2.2 29 1-29 100-134 (295)
476 3umf_A Adenylate kinase; rossm 76.1 1.2 4E-05 45.1 2.5 19 2-20 32-50 (217)
477 3tmk_A Thymidylate kinase; pho 76.0 1 3.5E-05 45.4 2.1 21 1-21 7-27 (216)
478 2r8r_A Sensor protein; KDPD, P 75.9 4.9 0.00017 41.1 7.1 27 2-28 9-41 (228)
479 2v1u_A Cell division control p 75.8 1.2 4.2E-05 46.8 2.7 21 2-22 47-67 (387)
480 1a7j_A Phosphoribulokinase; tr 75.7 0.77 2.6E-05 48.2 1.1 21 1-21 7-27 (290)
481 2fna_A Conserved hypothetical 75.6 1.1 3.7E-05 46.5 2.2 21 1-21 32-52 (357)
482 2ius_A DNA translocase FTSK; n 75.5 1.2 4.1E-05 50.8 2.6 21 1-21 169-189 (512)
483 2r6a_A DNAB helicase, replicat 75.5 1.1 3.7E-05 49.9 2.2 21 1-21 205-225 (454)
484 3sr0_A Adenylate kinase; phosp 75.3 1.4 4.7E-05 44.0 2.7 20 2-21 3-22 (206)
485 2qen_A Walker-type ATPase; unk 75.2 1.2 4.3E-05 46.0 2.5 21 1-21 33-53 (350)
486 2dhr_A FTSH; AAA+ protein, hex 75.1 1.2 4E-05 50.7 2.4 21 2-22 67-87 (499)
487 2zan_A Vacuolar protein sortin 75.0 2.5 8.5E-05 46.8 5.0 20 2-21 170-189 (444)
488 1bif_A 6-phosphofructo-2-kinas 74.9 1.3 4.6E-05 49.3 2.8 20 2-21 42-61 (469)
489 2o8b_B DNA mismatch repair pro 74.8 1 3.6E-05 55.4 2.1 21 1-22 791-811 (1022)
490 3ld9_A DTMP kinase, thymidylat 74.7 1.3 4.4E-05 45.0 2.4 21 1-21 23-43 (223)
491 1ko7_A HPR kinase/phosphatase; 74.7 1.4 4.9E-05 47.1 2.9 27 2-28 147-173 (314)
492 3ea0_A ATPase, para family; al 74.1 23 0.0008 34.6 11.5 29 2-30 7-43 (245)
493 2yv5_A YJEQ protein; hydrolase 74.1 3.3 0.00011 43.5 5.4 86 80-173 76-163 (302)
494 3h4m_A Proteasome-activating n 73.9 1.4 4.8E-05 44.9 2.5 20 2-21 54-73 (285)
495 2vf7_A UVRA2, excinuclease ABC 73.8 0.63 2.1E-05 56.2 -0.2 21 1-21 525-546 (842)
496 3cf0_A Transitional endoplasmi 73.2 1.5 5E-05 45.8 2.4 20 2-21 52-71 (301)
497 2orw_A Thymidine kinase; TMTK, 73.2 1.4 4.9E-05 42.9 2.2 19 2-20 6-24 (184)
498 3thx_A DNA mismatch repair pro 73.0 1.4 4.9E-05 53.7 2.6 19 1-19 664-682 (934)
499 1xwi_A SKD1 protein; VPS4B, AA 72.9 7.1 0.00024 41.2 7.7 20 2-21 48-67 (322)
500 2zr9_A Protein RECA, recombina 72.7 1.3 4.3E-05 47.9 1.8 21 1-21 63-83 (349)
No 1
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=100.00 E-value=1.8e-34 Score=323.60 Aligned_cols=313 Identities=15% Similarity=0.124 Sum_probs=234.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCC---------------CeeeecCCCCCCCCcccceeeEec-------CCCCcEEEEecC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT---------------NFREMDAFKGRSQTTKGIWMARCA-------GIEPCTLIMDLE 58 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt---------------kfsims~~~~r~QTTrGiw~~i~~-------~~~~qil~lDte 58 (772)
+|+|+|+||+|||||||+|||. +.++.+...+..+||+||||+..+ +.+.++||||||
T Consensus 69 vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTe 148 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQ 148 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcCC
Confidence 5899999999999999999986 444444333567899999999642 235689999999
Q ss_pred CCCCcCCCCCccHHHHHHHHHHhhc--ccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC----CCCccEEEEEeCC
Q 004126 59 GTDGRERGEDDTAFEKQSALFALAV--SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS----PRKTTLMFVIRDK 132 (772)
Q Consensus 59 G~~s~er~e~~~~fe~k~alfALa~--sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~----~~k~~llfVIrd~ 132 (772)
|++++++ ++++++.+|||+. |+++|+|++ |..++++...|+.+.+++..+.. +..+.|+|||||+
T Consensus 149 G~~~~~~-----~~~~d~~ifal~~lLSs~~IyN~~----~~i~~~~l~~L~~~~e~~~~~~~~~~~~~fp~l~wvvRD~ 219 (447)
T 3q5d_A 149 GTFDSQS-----TLRDSATVFALSTMISSIQVYNLS----QNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDW 219 (447)
T ss_dssp CCCSSHH-----HHHHHHHHHHHHHHHCSEEEEEES----SSCCHHHHHHHHHHHHHHHHTSCCCSSCSEEEEEEEEEEE
T ss_pred ccccccc-----chhhhHHHHHHHHHHhhHHHHhhc----ccccHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEeec
Confidence 9997764 4667788888875 999999995 67788889999999998765322 2467899999999
Q ss_pred CCCC-hhchHHHHHHHHHHHhhcCCC-CCCcc--CCCchhhH-HHHHhhcCCCccc--------------hhHHHHHHHH
Q 004126 133 TRTP-LENLEPVLREDIQKIWDSVPK-PQAHM--ETPLSEFF-NVEVVALSSFEEK--------------EELFKEQVAS 193 (772)
Q Consensus 133 d~t~-~e~l~~~l~~~l~~iw~~i~k-psa~~--~~~l~dlf-~~~~~~Lph~~~~--------------~~~F~~~v~~ 193 (772)
.... .+.-..+-.++++..+..... +.+.. ...+.++| ++.++.|||+.++ +++|.+++..
T Consensus 220 ~~~l~~~~g~~t~~eyLe~~L~~~~~~~~~~~~~r~~i~~~F~~~~cf~lp~P~~~v~~~~~~~~~l~~L~~~F~~~l~~ 299 (447)
T 3q5d_A 220 SFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKI 299 (447)
T ss_dssp CCTTTSCSBHHHHHHHHHHHHHSSTTCSSSSCCHHHHHHHHEEEEEEEEEECCCHHHHHCTTCCSBGGGSCHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCceEEeccCcccchhhhhhhhcchhhccHHHHHHHHH
Confidence 6421 111112334555555543221 11221 13477888 5788899998632 4799999999
Q ss_pred HHhhhcccCCCCCCCCCCCCcccCCchhHhHHHHHHHHHhcCCCCCchhHHHHHHhhhHHHHHHHHHhhhhhhhHHHHHH
Q 004126 194 LRQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEA 273 (772)
Q Consensus 194 Lr~~f~~~~~~~~~~~~~~~~ip~dg~~~y~~~iW~~I~~nkdLdlPtq~~mvA~~RC~Ei~~~~l~~f~~~~~~~~l~~ 273 (772)
|+..+..+..-. .+...+..+++.+|..|++.+|++|++|...++|++.+++|+++|.+++.++++.|.. .+++
T Consensus 300 l~~~i~~~~~~~-~K~~~G~~vtg~~L~~~~~~yv~ain~~~~P~~~s~~~~~a~~~~~~a~~~A~~~Y~~-----~m~~ 373 (447)
T 3q5d_A 300 LIPWLLSPESLD-IKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNK-----KMEE 373 (447)
T ss_dssp HHHHHHSTTTCC-CCEETTEECBHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred HHHHhcCccccc-ccccCCEeecHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 999999543211 0112234455666999999999999999999999999999999999999999999964 2333
Q ss_pred HHhc-CC---hhhHHHHHHHHHHHHhhchhhhhccchHHHHHHHHHHHHHHHHHhhHHH
Q 004126 274 AVQS-GP---ISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPA 328 (772)
Q Consensus 274 ~v~~-g~---v~~fg~~~~~~~~~~L~~yd~~AsrY~~~V~~~kr~eL~~~i~~~l~~~ 328 (772)
.+.. .+ .++|.......+++||+.|++.+..+.+.++++.+++|+++|...+..+
T Consensus 374 ~~~~~~p~~~~~~L~~~h~~~~~~al~~F~~~~~~g~~~~~~~~~~~L~~~l~~~~~~~ 432 (447)
T 3q5d_A 374 ICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQY 432 (447)
T ss_dssp HHCSSSSCCCHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 12 3469999999999999999999966689999999999999998775544
No 2
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.94 E-value=6.3e-25 Score=253.69 Aligned_cols=330 Identities=17% Similarity=0.167 Sum_probs=224.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC---CCCcEEEEecCCCCCcCCCCCccHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG---IEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~---~~~qil~lDteG~~s~er~e~~~~fe~k~al 78 (772)
|+|+|+||||||||||+|+|.+..+ +.......||+|+|++..+. .+..++++||||+.+++++.. . ....+
T Consensus 41 VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~-~---~~~~~ 115 (592)
T 1f5n_A 41 VAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDN-Q---NDSWI 115 (592)
T ss_dssp EEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCC-T---THHHH
T ss_pred EEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccch-h---HHHHH
Confidence 7899999999999999999998543 21112347899999985433 457899999999998887533 2 23455
Q ss_pred HHhh--cccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC------------------CCccEEEEEeCCCCCCh-
Q 004126 79 FALA--VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP------------------RKTTLMFVIRDKTRTPL- 137 (772)
Q Consensus 79 fALa--~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~------------------~k~~llfVIrd~d~t~~- 137 (772)
||++ .|+++|+|.- |..+..+..++..+.+..-.+..+ ..+.|+||+||+.....
T Consensus 116 fala~llss~lv~n~~----~~i~~~dl~~l~~v~e~~~~l~~k~~~~~~~~~~~~~~~~~~~fP~~~wvvRD~~l~~~~ 191 (592)
T 1f5n_A 116 FALAVLLSSTFVYNSI----GTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLEA 191 (592)
T ss_dssp HHHHHHHCSEEEEEEE----SCSSHHHHHTTHHHHTHHHHCBSCCC-------CCGGGGHHHHCCEEEEEEETCCCCCCC
T ss_pred HHHHHHhcCeEEEECC----CCccHHHHHHHHHHHHHhhhhhcccCcccccccccchhhhhccCCceEEEEecccchhcc
Confidence 5555 4889999863 344566777788888876555432 24789999999964311
Q ss_pred hchHHHHHHHHHHHhhcCCCCCC------ccCCCchhhHH-HHHhhcCCCccc--------------hhHHHHHHHHHHh
Q 004126 138 ENLEPVLREDIQKIWDSVPKPQA------HMETPLSEFFN-VEVVALSSFEEK--------------EELFKEQVASLRQ 196 (772)
Q Consensus 138 e~l~~~l~~~l~~iw~~i~kpsa------~~~~~l~dlf~-~~~~~Lph~~~~--------------~~~F~~~v~~Lr~ 196 (772)
+.-.-+-.++++..+........ .....+..||. ...+.|||+... +++|.+++..|++
T Consensus 192 ~g~~~t~~eyLe~~L~~~~~~~~~~~~~n~~R~~I~~~F~~~~cf~lp~P~~~~~l~~L~~~~~~~L~peF~~~l~~l~~ 271 (592)
T 1f5n_A 192 DGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKLQDEELDPEFVQQVADFCS 271 (592)
T ss_dssp SSSCCCHHHHHHHHTCCCCCCSHHHHHHHHHHHHHHHHCSCEEEEECCCCSCGGGGGGGGGSCGGGSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhhccCCChhhHhhhhHHHHHHHhCCCCcEEEeCCCCcHHHHhhhccCChhhCCHHHHHHHHHHHH
Confidence 10000123455555442211000 00123445553 455677776432 5799999999999
Q ss_pred hhcccCCCCCCCCCCCCcccCCc--hhHhHHHHHHHHHhcCCCCCchhHHHHHHhhhHHHHHHHHHhhhhhhhHHHHHHH
Q 004126 197 RFYHSVAPGGLAGDRRGVVPASG--FSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAA 274 (772)
Q Consensus 197 ~f~~~~~~~~~~~~~~~~ip~dg--~~~y~~~iW~~I~~nkdLdlPtq~~mvA~~RC~Ei~~~~l~~f~~~~~~~~l~~~ 274 (772)
++.....|..+. +++|+.| |..|+..+|++|+++.-..+++...++|+..|..+..+++..|.. .+.+.
T Consensus 272 ~i~~~~~~K~~~----gg~~vtG~~L~~l~~~yv~ain~g~vP~~~s~~~a~a~~e~~~av~~A~~~Y~~-----~M~~~ 342 (592)
T 1f5n_A 272 YIFSNSKTKTLS----GGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQ-----QMGQK 342 (592)
T ss_dssp HHHHHCCCCEET----TTEECBHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHccccceeec----CCccccHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHhh
Confidence 999876654332 3355555 999999999999999999999999999999999999999999964 23333
Q ss_pred HhcCC---hhhHHHHHHHHHHHHhhchhhhhccchHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHH
Q 004126 275 VQSGP---ISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQ---SMLGHIRSGTLDKFKDAF 348 (772)
Q Consensus 275 v~~g~---v~~fg~~~~~~~~~~L~~yd~~AsrY~~~V~~~kr~eL~~~i~~~l~~~f~---~~L~~l~~~~l~~fk~~l 348 (772)
+ .-+ ...|-..-.....+|++.|+..+.. .+..+-+.+|...|...+..+.. ..-...++.+++.+...+
T Consensus 343 ~-~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~---d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ll~~l~~~l 418 (592)
T 1f5n_A 343 V-QLPTESLQELLDLHRDSEREAIEVFIRSSFK---DVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPL 418 (592)
T ss_dssp C-CSSCSSHHHHHHHHHHHHHHHHHHHHHHCCC---CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-CCCCCCHHHHHHHHHHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 223 2357777888899999999987642 33455667777777766554443 223346777777777777
Q ss_pred HHhhc
Q 004126 349 DKALS 353 (772)
Q Consensus 349 ~~~l~ 353 (772)
...++
T Consensus 419 ~~~i~ 423 (592)
T 1f5n_A 419 EEEVK 423 (592)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66555
No 3
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=99.90 E-value=3.7e-22 Score=223.37 Aligned_cols=304 Identities=16% Similarity=0.139 Sum_probs=211.5
Q ss_pred CEEEeCCCCCChHHHHhHHh------------------CCCeeeecCCCCCCCCcccceeeEecC-------CCCcEEEE
Q 004126 1 MCHIFFVIMTGKSTLLNHLF------------------GTNFREMDAFKGRSQTTKGIWMARCAG-------IEPCTLIM 55 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf------------------Gtkfsims~~~~r~QTTrGiw~~i~~~-------~~~qil~l 55 (772)
+|+|+|++++|||||||+|+ ++.|++.+ +..+||+|||||..+. .+..+++|
T Consensus 69 vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~---~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG---GSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCC---SSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred EEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCC---CCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 58999999999999999776 47899876 5688999999997541 23579999
Q ss_pred ecCCCCCcCCCCCccHHHHHHHHHHhh--cccEEEEeeccccccccccCCHHHHHHHHHHHHhh----cCCCCccEEEEE
Q 004126 56 DLEGTDGRERGEDDTAFEKQSALFALA--VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRL----FSPRKTTLMFVI 129 (772)
Q Consensus 56 DteG~~s~er~e~~~~fe~k~alfALa--~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~l----f~~~k~~llfVI 129 (772)
||||+.+.+++ .++...+|||+ +|+++|+|+. |..+.....-|..+.++.-.. |....+.++|++
T Consensus 146 DTEG~~d~~~~-----~~~d~~ifaLa~LLSS~~IyN~~----~~i~~~~L~~L~~~tel~~~i~~~~~~~~Fp~f~wlv 216 (457)
T 4ido_A 146 DTQGTFDSQST-----LRDSATVFALSTMISSIQVYNLS----QNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLV 216 (457)
T ss_dssp EECCBTCTTCC-----HHHHHHHHHHHHHHCSEEEEEEE----SSCCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEE
T ss_pred eccCCCCcccC-----ccccHHHHHHHHHHhhheeeccc----ccCCHHHHHHHHHHHHHHHHHhhhcccccCCceEEEE
Confidence 99999988764 35667778777 6999999985 333445556666666643221 223567899999
Q ss_pred eCCCCCCh-hchHHHHHHHHHHHhhcCCCCCCccC-----CCchhhH-HHHHhhcCCCcc--------------chhHHH
Q 004126 130 RDKTRTPL-ENLEPVLREDIQKIWDSVPKPQAHME-----TPLSEFF-NVEVVALSSFEE--------------KEELFK 188 (772)
Q Consensus 130 rd~d~t~~-e~l~~~l~~~l~~iw~~i~kpsa~~~-----~~l~dlf-~~~~~~Lph~~~--------------~~~~F~ 188 (772)
||+..... +.-...-.+++++.-. +. +..... ..+..+| +...+.|||... =+++|.
T Consensus 217 RDf~l~l~~~~g~~t~~eyLe~~L~-~~-~g~~~~~~~iR~~I~~~F~~~~Cf~lp~P~~~~~~~~~~~~~l~dL~peF~ 294 (457)
T 4ido_A 217 RDWSFPYEFSYGADGGAKFLEKRLK-VS-GNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFI 294 (457)
T ss_dssp ETCCCTTTSCSBHHHHHHHHHHHHC-CC-TTSCHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHCTTCCCCGGGSCHHHH
T ss_pred ecCCccccccCCCCCHHHHHHHHhc-cC-CCCCHHHHHHHHHHHHhCCCCcEEEcCCCchhhhhchhhhcChhhCCHHHH
Confidence 99975311 1111122334443222 11 111000 1122222 123456777631 157899
Q ss_pred HHHHHHHhhhcccCC--CCCCCCCCCCcccCCchhHhHHHHHHHHHhcCCCCCchhHHHHHHhhhHHHHHHHHHhhhhhh
Q 004126 189 EQVASLRQRFYHSVA--PGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANE 266 (772)
Q Consensus 189 ~~v~~Lr~~f~~~~~--~~~~~~~~~~~ip~dg~~~y~~~iW~~I~~nkdLdlPtq~~mvA~~RC~Ei~~~~l~~f~~~~ 266 (772)
+++..|+..+..+.. +..+ .+..+....|..|+..+.++|+++.-..+++....+|+..|..+..+|++.|..
T Consensus 295 ~ql~~l~~~I~~~~~l~~K~i---~G~~vtg~~L~~lv~~Yv~ain~g~vP~~esa~~a~ae~en~~Av~~A~~~Y~~-- 369 (457)
T 4ido_A 295 KNLKILIPWLLSPESLDIKEI---NGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNK-- 369 (457)
T ss_dssp HHHHHHHHHHHSTTTCCCCEE---TTEECBHHHHHHHHHHHHHHHHSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhcccccccccc---CCEeecHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999999996443 3222 223344455999999999999999888999999999999999999999999954
Q ss_pred hHHHHHHHHhc-CC---hhhHHHHHHHHHHHHhhchhhhhccchHHHHHHHHHHHHHHHHHhhH
Q 004126 267 EWCELEAAVQS-GP---ISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQ 326 (772)
Q Consensus 267 ~~~~l~~~v~~-g~---v~~fg~~~~~~~~~~L~~yd~~AsrY~~~V~~~kr~eL~~~i~~~l~ 326 (772)
.+.+.+.. -+ .++|-..-....++|++.|+..+....+.++++-+.+|+..|.....
T Consensus 370 ---~M~~~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~g~~d~~~~~~~~L~~~l~~~~~ 430 (457)
T 4ido_A 370 ---KMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYI 430 (457)
T ss_dssp ---HHHHHHSTTSCCCCHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 33343321 12 34699999999999999999877677888888888888887776643
No 4
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.76 E-value=1.5e-18 Score=185.50 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=127.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC-CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI-EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~-~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
||+|+|+||+|||||+|+|+|.++++++ ..+|||++.+.++.+.. +.+++|+||||.+........+..++..+..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s---~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKVSIIS---PKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCC---SSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccccC---CCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 6999999999999999999999999887 57999999999999988 8999999999998655222246788889999
Q ss_pred HhhcccEEEEeeccccccccccCCHHH-HHHHHHHHHhhcCCCCccEEEEEeCCCCC-ChhchHHHHHHHHHHH--hhcC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPL-LKTVFQVMMRLFSPRKTTLMFVIRDKTRT-PLENLEPVLREDIQKI--WDSV 155 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~l-Lktv~evnl~lf~~~k~~llfVIrd~d~t-~~e~l~~~l~~~l~~i--w~~i 155 (772)
++..+|++|+.+...+.- ...+..+ ++.+. ....|+++|+||+|.. +.+.+...+.+..+.+ +..+
T Consensus 89 ~l~~aD~il~VvD~~~~~--~~~~~~~~~~~l~--------~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 89 SLEEADVILFMIDATEGW--RPRDEEIYQNFIK--------PLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHCSEEEEEEETTTBS--CHHHHHHHHHHTG--------GGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HhhcCCEEEEEEeCCCCC--CchhHHHHHHHHH--------hcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence 999999998866543211 1111111 22222 2568999999999987 6666665544433333 2457
Q ss_pred CCCCCccCCCchhhHHHHHhhcCC
Q 004126 156 PKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
.+.|+..+.+++++|+.....+|.
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEEeCCCCCCHHHHHHHHHHhCcc
Confidence 789999999999999999888874
No 5
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.74 E-value=5.1e-18 Score=181.18 Aligned_cols=185 Identities=17% Similarity=0.053 Sum_probs=131.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
+|+|||+||+|||||+|+|+|.++++++ .++||||..+.++.+..+.++.|+||||.+.+. .. .+.+++..+..+
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs---~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~-~~-l~~~~~~~~~~~ 83 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPIS---PRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM-DA-LGEFMDQEVYEA 83 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCC---SSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC-SH-HHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeec---CCCCceeEEEEEEEEeCCcEEEEecCccccchh-hH-HHHHHHHHHHHH
Confidence 5899999999999999999999999877 579999999999988888999999999998443 32 367788889999
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc-hHHHHHHHHHHHhhcCCCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN-LEPVLREDIQKIWDSVPKPQ 159 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~-l~~~l~~~l~~iw~~i~kps 159 (772)
+..+|++|+.+...+- .......+++.+.+ . ..+.|+++|+||+|+.+.+. +.+.+.+. .-+..+.+.|
T Consensus 84 l~~ad~il~VvD~~~~--~~~~~~~i~~~l~~----~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iS 153 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHP--PTPEDELVARALKP----L--VGKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLS 153 (301)
T ss_dssp TSSCSEEEEEEETTSC--CCHHHHHHHHHHGG----G--TTTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECC
T ss_pred HhcCCEEEEEEECCCC--CChHHHHHHHHHHh----h--cCCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEe
Confidence 9999999887755321 01111112222222 1 03689999999999875443 33322221 0134567889
Q ss_pred CccCCCchhhHHHHHhhcCCCc----------cchhHHHHHHHHHHhhhccc
Q 004126 160 AHMETPLSEFFNVEVVALSSFE----------EKEELFKEQVASLRQRFYHS 201 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~Lph~~----------~~~~~F~~~v~~Lr~~f~~~ 201 (772)
+..+.+++++|+.....+|... -+++.|. ..+.+|..+...
T Consensus 154 A~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~-~~e~~Re~~~~~ 204 (301)
T 1wf3_A 154 ALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEW-VAEILREEAMKR 204 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHH-HHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHH-HHHHHHHHHHHH
Confidence 9999999999999988875311 1244453 556667776643
No 6
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.71 E-value=4.4e-18 Score=181.33 Aligned_cols=184 Identities=15% Similarity=0.144 Sum_probs=129.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
+|+|+|+||+|||||+|+|.|.++++++ +++||||....|+.+..+.++.|+||||.+...+.. ....+++.+..+
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~~i~s---~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~-l~~~~~~~~~~~ 85 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKISITS---RKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRA-INRLMNKAASSS 85 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECC---CCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHH-HHHHHTCCTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC---CCCCcceeeEEEEEEECCeeEEEEECcCCCccchhh-HHHHHHHHHHHH
Confidence 5899999999999999999999999877 579999999999998888899999999997222211 123344556677
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC-hhchHHHHHHHHHHH-hhcCCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP-LENLEPVLREDIQKI-WDSVPKP 158 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~-~e~l~~~l~~~l~~i-w~~i~kp 158 (772)
+..+|++++.+...+++ +....+++.+. ..+.|.++|+||+|... .+.+.+.+.+..+.. |..+.+.
T Consensus 86 l~~~D~vl~Vvd~~~~~---~~~~~i~~~l~--------~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 86 IGDVELVIFVVEGTRWT---PDDEMVLNKLR--------EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp CCCEEEEEEEEETTCCC---HHHHHHHHHHH--------SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred HhcCCEEEEEEeCCCCC---HHHHHHHHHHH--------hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEE
Confidence 88999998766554322 11222233222 25789999999999875 444444433322111 3347788
Q ss_pred CCccCCCchhhHHHHHhhcCCCc--c-------chhHHHHHHHHHHhhhcc
Q 004126 159 QAHMETPLSEFFNVEVVALSSFE--E-------KEELFKEQVASLRQRFYH 200 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lph~~--~-------~~~~F~~~v~~Lr~~f~~ 200 (772)
|+..+.+++++++.....+|... | .++.|. ..+.+|..+..
T Consensus 155 SA~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~-~~e~~re~l~~ 204 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFM-ASEIIREKLMR 204 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHH-HHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHH-HHHHHHHHHHH
Confidence 99999999999999998887422 1 245554 45556776653
No 7
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.48 E-value=2.8e-12 Score=151.33 Aligned_cols=116 Identities=19% Similarity=0.138 Sum_probs=72.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCC--------------cccceeeE-------------ecCCC-----
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQT--------------TKGIWMAR-------------CAGIE----- 49 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QT--------------TrGiw~~i-------------~~~~~----- 49 (772)
|+|+|.+|+|||||+|+|+|.++.+++. .+.| |+...-|. .....
T Consensus 72 V~VvG~~naGKSSLlNaLlg~~~~~v~~---~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 72 LLVLGDMKRGKSTFLNALIGENLLPSDV---NPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp EEEECCTTSCHHHHHHHHHTSSCSCCCC---CTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCC---CCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 7899999999999999999999887663 3444 22210000 00000
Q ss_pred -------------------------CcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCH
Q 004126 50 -------------------------PCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANK 104 (772)
Q Consensus 50 -------------------------~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~ 104 (772)
..+.++||||+..... ....+...+..+|++|+.+...+.. ..
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i~~aD~vL~Vvda~~~~-----s~ 216 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYVNNCHAILFVMRASQPC-----TL 216 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHHHSSSEEEEEEETTSTT-----CH
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHHHhCCEEEEEEeCCCcc-----ch
Confidence 4799999999974331 1345666778999998877653211 11
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 105 PLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 105 ~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
.-+..+.+ .......|+++|+||+|..+
T Consensus 217 ~e~~~l~~----~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 217 GERRYLEN----YIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp HHHHHHHH----HTTTSCCCEEEEEECGGGGG
T ss_pred hHHHHHHH----HHHhhCCCEEEEEECccccc
Confidence 11222211 11224567999999998753
No 8
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.48 E-value=3.7e-14 Score=149.80 Aligned_cols=166 Identities=15% Similarity=0.129 Sum_probs=97.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCe-----eeecCCCCCC---CCccc----------------------------------
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNF-----REMDAFKGRS---QTTKG---------------------------------- 39 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkf-----sims~~~~r~---QTTrG---------------------------------- 39 (772)
|+|+|.||+|||||+|+|+|.++ .+++ .++ |||++
T Consensus 27 I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 27 IVVVGSQSSGKSSVLENIVGRDFLPRGSGIVT---RRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp EEEEECSSSSHHHHHHHHHTSCCCCC-----------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHCCCcCCCCCCcee---eeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 89999999999999999999998 5555 355 78875
Q ss_pred ----ceee-------------EecCCCCcEEEEecCCCCCcCCC---CCccHHHHHHHHHHhhcccEEEEeecccccccc
Q 004126 40 ----IWMA-------------RCAGIEPCTLIMDLEGTDGRERG---EDDTAFEKQSALFALAVSDIVLINMWCHDIGRE 99 (772)
Q Consensus 40 ----iw~~-------------i~~~~~~qil~lDteG~~s~er~---e~~~~fe~k~alfALa~sDvliiNl~~~dig~~ 99 (772)
.++| +......++.|+||||++..... .....+.+..+..++..+|++|+.+...+.+..
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~ 183 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence 2221 12223468999999999842211 113567788899999999988776654222211
Q ss_pred ccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc-hHHHHHHHHHH--H-hhcCCCCCCcc---CCCchhhHHH
Q 004126 100 QAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN-LEPVLREDIQK--I-WDSVPKPQAHM---ETPLSEFFNV 172 (772)
Q Consensus 100 ~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~-l~~~l~~~l~~--i-w~~i~kpsa~~---~~~l~dlf~~ 172 (772)
......+++.+. +...|+++|+||+|..+.+. +.+.+.+.+.. . |..+...++.. +.++.++++.
T Consensus 184 ~~~~~~i~~~~~--------~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 184 NSDALQLAKEVD--------PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp TCSHHHHHHHHC--------SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred hhHHHHHHHHhC--------CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 221123333332 25789999999999764433 33333221111 1 44455556554 5666666665
Q ss_pred HHhhcC
Q 004126 173 EVVALS 178 (772)
Q Consensus 173 ~~~~Lp 178 (772)
....+|
T Consensus 256 ~~~~~~ 261 (315)
T 1jwy_B 256 EILYFK 261 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 544443
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.48 E-value=1.2e-13 Score=137.66 Aligned_cols=167 Identities=14% Similarity=0.030 Sum_probs=108.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCC-eeeecCCCCCCCCcccceeeEec-CCCCcEEEEecCCCCCcCCCCCccHHHHH---H
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN-FREMDAFKGRSQTTKGIWMARCA-GIEPCTLIMDLEGTDGRERGEDDTAFEKQ---S 76 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk-fsims~~~~r~QTTrGiw~~i~~-~~~~qil~lDteG~~s~er~e~~~~fe~k---~ 76 (772)
|+|+|.+|+|||||+|+|+|.+ +..++ ..+.||+.+...... .....+.++||||++........+..... .
T Consensus 32 i~v~G~~~~GKSslin~l~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 32 IAFAGRSNAGKSTAINVLCNQKRLAFAS---KTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp EEEEESCHHHHHHHHHHHTTCSSSSCTT---CCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHhCCCcceeec---CCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 7899999999999999999997 55555 467789987555444 55689999999998744322111111122 2
Q ss_pred HHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHHh-
Q 004126 77 ALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKIW- 152 (772)
Q Consensus 77 alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~iw- 152 (772)
.+.....+|++|+.+...+ + .......+++.+.+ ...|+++|+||+|+.+.+.+. ..+.+.+..++
T Consensus 109 ~~~~~~~~d~vi~v~d~~~-~-~~~~~~~~~~~l~~--------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARR-P-LTELDRRMIEWFAP--------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHCTTEEEEEEEEETTS-C-CCHHHHHHHHHHGG--------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcCcCEEEEEEeCCC-C-CCHHHHHHHHHHHh--------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 2333444888877665433 1 11112223333322 568999999999987665543 33334444431
Q ss_pred ------hcCCCCCCccCCCchhhHHHHHhhcCCCc
Q 004126 153 ------DSVPKPQAHMETPLSEFFNVEVVALSSFE 181 (772)
Q Consensus 153 ------~~i~kpsa~~~~~l~dlf~~~~~~Lph~~ 181 (772)
..+.+.|+..+.+++++|+.....+|...
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 24678899999999999999998888653
No 10
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.45 E-value=1.2e-13 Score=154.18 Aligned_cols=162 Identities=14% Similarity=0.105 Sum_probs=102.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|||+||||||||+|+|.|.++++++ ..+.|||+...+.....+.++.++||||+....... .+..++..+..++
T Consensus 4 v~ivG~pnvGKStL~nrl~~~~~~~v~---~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~-~~~~~~~~~~~~~ 79 (439)
T 1mky_A 4 VLIVGRPNVGKSTLFNKLVKKKKAIVE---DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI-ISQKMKEVTLNMI 79 (439)
T ss_dssp EEEECCTTSSHHHHHHHHHC-----------------CCSEEEEEETTEEEEEEECTTTTSSGGGC-CCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCceec---CCCCCccceeeEEEEECCeEEEEEECCCccccccch-HHHHHHHHHHHHH
Confidence 799999999999999999999998876 468999999988887777789999999997322111 2556778889999
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i~kpsa 160 (772)
..||++|+.+...+ |. ...+..+.+.+.+ ..+|+++|+||+|.... .......+.... ...+.+.|+
T Consensus 80 ~~ad~il~V~D~~~-~~-~~~d~~i~~~l~~--------~~~p~ilv~NK~D~~~~--~~~~~~~~~~~lg~~~~~~iSA 147 (439)
T 1mky_A 80 READLVLFVVDGKR-GI-TKEDESLADFLRK--------STVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSA 147 (439)
T ss_dssp TTCSEEEEEEETTT-CC-CHHHHHHHHHHHH--------HTCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBT
T ss_pred HhCCEEEEEEECCC-CC-CHHHHHHHHHHHH--------cCCCEEEEEeCCCCccc--cHHHHHHHHHhcCCCCEEEEec
Confidence 99999988775422 10 1111222232322 46889999999987422 011110111111 124567899
Q ss_pred ccCCCchhhHHHHHhhcCC
Q 004126 161 HMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lph 179 (772)
..+.++.++|+.....+|.
T Consensus 148 ~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 148 EHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhccc
Confidence 9999999999998887763
No 11
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.42 E-value=7.3e-13 Score=149.99 Aligned_cols=224 Identities=14% Similarity=0.051 Sum_probs=116.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|.||+|||||+|+|.|..+.+++ ..+.||++............+.++||||.... +.. ...+..+.+...+
T Consensus 236 V~ivG~~nvGKSSLln~L~~~~~a~vs---~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~-~~~-ve~~gi~~~~~~~ 310 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLLGQERAIVS---HMPGTTRDYIEECFIHDKTMFRLTDTAGLREA-GEE-IEHEGIRRSRMKM 310 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC---------------------CEEEEETTEEEEEEC----------------------CCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcccC---CCCCceEEEEEEEEEECCeEEEEEECCCCCcc-hhH-HHHHHHHHHHhhc
Confidence 789999999999999999999888777 46889999988877777789999999999632 211 1333345566778
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i~kpsa 160 (772)
..+|++|+.+...+.. . ..-++...++.-.+ ...|+++|+||+|+.+...... +.+... |..+.+.|+
T Consensus 311 ~~aD~vl~VvD~s~~~---s--~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSA 379 (476)
T 3gee_A 311 AEADLILYLLDLGTER---L--DDELTEIRELKAAH---PAAKFLTVANKLDRAANADALI---RAIADGTGTEVIGISA 379 (476)
T ss_dssp SSCSEEEEEEETTTCS---S--GGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTTHHHH---HHHHHHHTSCEEECBT
T ss_pred ccCCEEEEEEECCCCc---c--hhhhHHHHHHHHhc---CCCCEEEEEECcCCCCccchhH---HHHHhcCCCceEEEEE
Confidence 8999998866543321 1 10022222211111 2689999999999875544331 222222 345778899
Q ss_pred ccCCCchhhHHHHHhhcC-CCccc-------h----hHHHHHHHHHHhhhcccCCCCCCCCCCCCcccCCchhHhHHHHH
Q 004126 161 HMETPLSEFFNVEVVALS-SFEEK-------E----ELFKEQVASLRQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEIW 228 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lp-h~~~~-------~----~~F~~~v~~Lr~~f~~~~~~~~~~~~~~~~ip~dg~~~y~~~iW 228 (772)
.++.+++++|+.....++ +.... + +...+....|++-.. . + ....|.+=++..+...|
T Consensus 380 ktg~GI~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~~~-~-----l----~~~~~~dl~a~~lr~a~ 449 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNALE-L-----I----AHESETELIAFELRAAL 449 (476)
T ss_dssp TTTBSHHHHHHHHTHHHHSSCCCCTTSCCCCSHHHHHHHHHHHHHHHHHHT-T-----T----TTTCCSSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccCCCCcccccccHHHHHHHHHHHHHHHHHHH-H-----H----HcCCCHHHHHHHHHHHH
Confidence 999999999999877665 32211 1 122223333333222 1 1 12355565666666666
Q ss_pred HHHHhcCCCCCchhHHHHHHhhhHHHHHHHHHhh
Q 004126 229 KVIKENKDLDLPAHKVMVATVRCEEIANEKYSSF 262 (772)
Q Consensus 229 ~~I~~nkdLdlPtq~~mvA~~RC~Ei~~~~l~~f 262 (772)
+.+.. +.-.+-.+++.+..+..|
T Consensus 450 ~~Lg~-----------itG~~~~edlL~~iF~~F 472 (476)
T 3gee_A 450 DYVGQ-----------ITGKVVNEEVLNTIFDKF 472 (476)
T ss_dssp HHHHH-----------HHTSSCCSSHHHHHHTTS
T ss_pred HHHHH-----------HhCCCCcHHHHHHHHhcC
Confidence 66654 444556666666666666
No 12
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.42 E-value=1.8e-13 Score=142.70 Aligned_cols=159 Identities=16% Similarity=0.052 Sum_probs=107.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|.||+|||||+|+|.|.++.+.+ .+.||.....+.....+..+.++||||+.+..........+...+...+
T Consensus 4 I~lvG~~n~GKSTL~n~L~g~~~~v~~----~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 4 ALLIGNPNCGKTTLFNALTNANQRVGN----WPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSEEEEE----CTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCccC----CCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 789999999999999999999987654 5889999888888777779999999999854432100122333333334
Q ss_pred --hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHHhhcCC
Q 004126 82 --AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKIWDSVP 156 (772)
Q Consensus 82 --a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~iw~~i~ 156 (772)
..+|++|+.+...+. ..+..++..+.+ ...|+++|+||+|..+...+. +.+.+.+ --.+.
T Consensus 80 ~~~~~d~vi~VvDas~~----~~~~~l~~~l~~--------~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l---g~~vi 144 (256)
T 3iby_A 80 IDLEYDCIINVIDACHL----ERHLYLTSQLFE--------LGKPVVVALNMMDIAEHRGISIDTEKLESLL---GCSVI 144 (256)
T ss_dssp HHSCCSEEEEEEEGGGH----HHHHHHHHHHTT--------SCSCEEEEEECHHHHHHTTCEECHHHHHHHH---CSCEE
T ss_pred hhCCCCEEEEEeeCCCc----hhHHHHHHHHHH--------cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc---CCCEE
Confidence 789999876654331 122222333322 578999999999865333222 2233322 23577
Q ss_pred CCCCccCCCchhhHHHHHhhcCCC
Q 004126 157 KPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
+.|+..+.+++++|+..... ++.
T Consensus 145 ~~SA~~g~gi~el~~~i~~~-~~~ 167 (256)
T 3iby_A 145 PIQAHKNIGIPALQQSLLHC-SQK 167 (256)
T ss_dssp ECBGGGTBSHHHHHHHHHTC-CSC
T ss_pred EEECCCCCCHHHHHHHHHhh-hcC
Confidence 88999999999999988776 443
No 13
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.41 E-value=2.1e-13 Score=143.16 Aligned_cols=160 Identities=13% Similarity=0.050 Sum_probs=109.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHH--HHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQS--ALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~--alf 79 (772)
|+++|.+|+|||||+|+|.|.++.+.+ .+.||.....+.....+..+.++||||..+..........+... ...
T Consensus 6 I~lvG~~n~GKSTLin~l~g~~~~v~~----~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 6 IGLIGNPNSGKTTLFNQLTGSRQRVGN----WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp EEEEECTTSSHHHHHHHHHTTCEEEEE----CTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCcccCC----CCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 789999999999999999999976544 57789888888887777899999999998544110001122222 233
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHHhhcCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKIWDSVP 156 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~iw~~i~ 156 (772)
....+|++|+.+...+. ..+..++..+.+ ...|+++|+||+|..+...+. +.+.+.+ --.+.
T Consensus 82 ~~~~~d~ii~VvD~~~~----~~~~~~~~~l~~--------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l---g~~~i 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNL----ERNLYLTLQLLE--------LGIPCIVALNMLDIAEKQNIRIEIDALSARL---GCPVI 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGH----HHHHHHHHHHHH--------HTCCEEEEEECHHHHHHTTEEECHHHHHHHH---TSCEE
T ss_pred hhcCCCEEEEEecCCCh----HHHHHHHHHHHh--------cCCCEEEEEECccchhhhhHHHHHHHHHHhc---CCCEE
Confidence 45789999876654331 123334444444 478999999999875433222 2232222 23477
Q ss_pred CCCCccCCCchhhHHHHHhhcCCC
Q 004126 157 KPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
+.|+..+.+++++|+.....++..
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcC
Confidence 889999999999999988888754
No 14
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.41 E-value=1.2e-12 Score=132.03 Aligned_cols=167 Identities=12% Similarity=0.050 Sum_probs=100.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|+|.+|.+ + +.+.||+.+..+........+.++||||.......+. ...+........
T Consensus 32 I~vvG~~~vGKSsLin~l~~~~~~~-~---~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~~~ 106 (228)
T 2qu8_A 32 IILSGAPNVGKSSFMNIVSRANVDV-Q---SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENR-NTIEMTTITALA 106 (228)
T ss_dssp EEEECSTTSSHHHHHHHHTTTCEEE-E---CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGC-CHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcc-C---CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchh-hhHHHHHHHHhh
Confidence 7899999999999999999999984 3 3578999998887766677899999999964321111 222222222225
Q ss_pred hcccEEEEeeccccccccc-cCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHh------hc
Q 004126 82 AVSDIVLINMWCHDIGREQ-AANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW------DS 154 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~-~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw------~~ 154 (772)
..+|++|+.+...+..... .....+++.+.+ . ....|+++|+||+|+.+...+.....+.+..+. ..
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~----~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKS----V--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK 180 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT----C--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHH----h--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce
Confidence 6778887765543322111 001112222221 0 137899999999998655444322222222221 34
Q ss_pred CCCCCCccCCCchhhHHHHHhhcCC
Q 004126 155 VPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
+...|+..+.+++++|+.....+..
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 181 FSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHHHH
Confidence 6788999999999999988877643
No 15
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.41 E-value=1.7e-12 Score=125.39 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=102.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHH---HH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQS---AL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~---al 78 (772)
|.|+|.+|+|||||+|+|+|..+...+ +.+.||+.+..... +.++.++||||++........+...+.. ..
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 26 VAFVGRSNVGKSSLLNALFNRKIAFVS---KTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSCCSCCC---SSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCcccccc---CCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 789999999999999999999977665 45678888766554 4679999999976432211101111222 22
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHH---HHHHHHHh-hc
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL---REDIQKIW-DS 154 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l---~~~l~~iw-~~ 154 (772)
.....+|++++.+...+. .......+++.+.+ ...|+++|+||+|+.+.+...... .+....+. ..
T Consensus 100 ~~~~~~~~vi~v~d~~~~--~~~~~~~~~~~~~~--------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIP--PQDSDLMMVEWMKS--------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHCTTEEEEEEEEETTSC--CCHHHHHHHHHHHH--------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred hcCcCceEEEEEecCCCC--CCHHHHHHHHHHHH--------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence 223345877765543221 01112233344444 478999999999987655444332 22222111 14
Q ss_pred CCCCCCccCCCchhhHHHHHhhcC
Q 004126 155 VPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
+.+.|+..+.+++++|+.....++
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC
T ss_pred eEEEecCCCCCHHHHHHHHHHHhh
Confidence 667899999999999998877665
No 16
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.37 E-value=2.2e-13 Score=152.01 Aligned_cols=158 Identities=15% Similarity=0.174 Sum_probs=97.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|||+||+|||||+|+|.|.++++++ ..+.|||+...+.....+..+.++||||....... ....++..+..++
T Consensus 6 V~ivG~~nvGKStL~n~l~~~~~~~v~---~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~--~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 6 VAIVGRPNVGKSTIFNRIAGERISIVE---DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP--FLAQIRQQAEIAM 80 (436)
T ss_dssp EEEECSTTSSHHHHHHHHEEEECC--------------CEEEECTTCSSCCEEEC---------C--HHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCceeec---CCCCCccceEEEEEEECCceEEEEECCCCCCcchh--HHHHHHHHHHHHH
Confidence 899999999999999999999999876 46889999998888877889999999999732211 2345667788899
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh-chHHHHHHHHHHH-hhcCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKI-WDSVPKPQ 159 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e-~l~~~l~~~l~~i-w~~i~kps 159 (772)
..+|++|+.+...+ |. ......+.+.+ .+..+|+++|+||+|..+.+ .+.+. . .. ...+.+.|
T Consensus 81 ~~ad~il~vvD~~~-~~-~~~d~~~~~~l--------~~~~~pvilv~NK~D~~~~~~~~~~~----~-~lg~~~~~~iS 145 (436)
T 2hjg_A 81 DEADVIIFMVNGRE-GV-TAADEEVAKIL--------YRTKKPVVLAVNKLDNTEMRANIYDF----Y-SLGFGEPYPIS 145 (436)
T ss_dssp HHCSEEEEEEETTT-CS-CHHHHHHHHHH--------TTCCSCEEEEEECCCC-----CCCSS----G-GGSSCCCEECB
T ss_pred HhCCEEEEEEeCCC-CC-CHHHHHHHHHH--------HHcCCCEEEEEECccCccchhhHHHH----H-HcCCCCeEEEe
Confidence 99999988765422 11 11111111211 23678999999999975432 11110 0 11 23466789
Q ss_pred CccCCCchhhHHHHHhhcCC
Q 004126 160 AHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~Lph 179 (772)
+..+.++.++|+.....+|.
T Consensus 146 A~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 146 GTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp TTTTBTHHHHHHHHHHTGGG
T ss_pred CcCCCChHHHHHHHHHhcCc
Confidence 99999999999999888874
No 17
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.37 E-value=8.1e-13 Score=136.18 Aligned_cols=164 Identities=13% Similarity=0.050 Sum_probs=103.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCC-CcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHH---HHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQ-TTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFE---KQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~Q-TTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe---~k~a 77 (772)
|.|+|.+|+|||||+|+|+|.+..+.+ ..++ ||++...+.....+.++.|+||||..... ... ..+. .+.+
T Consensus 25 I~lvG~~g~GKStl~n~l~~~~~~~~~---~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~-~~~-~~~~~~i~~~~ 99 (260)
T 2xtp_A 25 IILVGKTGTGKSAAGNSILRKQAFESK---LGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK-DHC-EALYKEVQRCY 99 (260)
T ss_dssp EEEEECTTSCHHHHHHHHHTSCCSCCC---TTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS-CCC-HHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcccC---CCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC-CCH-HHHHHHHHHHH
Confidence 789999999999999999999865544 2455 89999888887778899999999987443 222 3433 4555
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC-CCccEEEEEe-CCCCCChhchHHH--------HHHH
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIR-DKTRTPLENLEPV--------LRED 147 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~-~k~~llfVIr-d~d~t~~e~l~~~--------l~~~ 147 (772)
..++..+|++|+.+... +.... ...+.+...++|+. ...|.++|++ |.|+.+. .+... +.+.
T Consensus 100 ~~~~~~~d~il~V~d~~---~~~~~----~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLG---RYTSQ----DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHTTCCSEEEEEEETT---CCCHH----HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHH
T ss_pred HhcCCCCcEEEEEEeCC---CCCHH----HHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHH
Confidence 66788999998766543 22221 12222322334443 1456667776 9887632 23221 2222
Q ss_pred HHHH------hhcCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 148 IQKI------WDSVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 148 l~~i------w~~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
+..+ |.. .+.|+..+.+++++|+.+...++.
T Consensus 172 ~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 172 VAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHh
Confidence 2222 221 455666777777877776665543
No 18
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.37 E-value=1.5e-12 Score=122.05 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=101.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.+|+|||||+|+|.|..+...+ ..+.||+..........+..+.++||||...... . ....+......+
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~-~~~~~~~~~~~~ 77 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKRSAVVA---DVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK--W-EKKIQEKVDRAL 77 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCCC--------------CCEEEEEEETTEEEEEEECGGGCSSSS--C-CHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCCeeecc---CCCCceecceEEEEEeCCceEEEEECCCCCCccc--h-HHHHHHHHHHHH
Confidence 689999999999999999999987655 3567888877766666667899999999874321 2 333455666778
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh-chHHHHHHHHHHH-hhcCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKI-WDSVPKPQ 159 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e-~l~~~l~~~l~~i-w~~i~kps 159 (772)
..+|++|+.+...+. .......+.+.+.+ ...|+++|+||+|..+.+ .+++. . .+ ...+.+.|
T Consensus 78 ~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~--------~~~p~ilv~nK~Dl~~~~~~~~~~-~----~~~~~~~~~~S 142 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAE--LTQADYEVAEYLRR--------KGKPVILVATKVDDPKHELYLGPL-Y----GLGFGDPIPTS 142 (161)
T ss_dssp TTCSEEEEEEESSSC--CCHHHHHHHHHHHH--------HTCCEEEEEECCCSGGGGGGCGGG-G----GGSSCSCEECB
T ss_pred HhCCEEEEEEECCCc--ccHhHHHHHHHHHh--------cCCCEEEEEECcccccchHhHHHH-H----hCCCCCeEEEe
Confidence 899999886654331 11111223333332 468899999999986442 22211 1 11 22467889
Q ss_pred CccCCCchhhHHHHHhhcC
Q 004126 160 AHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~Lp 178 (772)
+..+.+++++|+.....+|
T Consensus 143 a~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 143 SEHARGLEELLEAIWERLP 161 (161)
T ss_dssp TTTTBSHHHHHHHHHHHCC
T ss_pred cccCCChHHHHHHHHHhCc
Confidence 9999999999999888776
No 19
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.36 E-value=1.7e-12 Score=135.22 Aligned_cols=177 Identities=12% Similarity=0.039 Sum_probs=116.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|.||+|||||+|+|.|.++.+.+ .+.||.....+........+.++||||..+...... .+...+. ....
T Consensus 8 I~lvG~~nvGKTsL~n~l~g~~~~~~~----~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~e~v~~~-~~~~ 81 (258)
T 3a1s_A 8 VALAGCPNVGKTSLFNALTGTKQYVAN----WPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSI-DEKIARD-YLLK 81 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHTTCEEEEE----CTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSH-HHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHHHHHCCCCcccC----CCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCH-HHHHHHH-HHhh
Confidence 789999999999999999999998644 467888888887776677999999999985433211 1111111 1112
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHHhhcCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~iw~~i~kp 158 (772)
..+|++++.+...+.. .+..++..+.+ ...|+++|+||+|......+. ..+.+.+ --.+.+.
T Consensus 82 ~~~d~ii~V~D~t~~~----~~~~~~~~l~~--------~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l---g~~vi~~ 146 (258)
T 3a1s_A 82 GDADLVILVADSVNPE----QSLYLLLEILE--------MEKKVILAMTAIDEAKKTGMKIDRYELQKHL---GIPVVFT 146 (258)
T ss_dssp SCCSEEEEEEETTSCH----HHHHHHHHHHT--------TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH---CSCEEEC
T ss_pred cCCCEEEEEeCCCchh----hHHHHHHHHHh--------cCCCEEEEEECcCCCCccchHHHHHHHHHHc---CCCEEEE
Confidence 5799987766543321 12223333333 578999999999864322221 2222222 2246788
Q ss_pred CCccCCCchhhHHHHHhhcCC------Cc-cchhHHHHHHHHHHhhhc
Q 004126 159 QAHMETPLSEFFNVEVVALSS------FE-EKEELFKEQVASLRQRFY 199 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lph------~~-~~~~~F~~~v~~Lr~~f~ 199 (772)
|+..+.+++++|+.....++. .. .-.+++.+.+.++.+.+.
T Consensus 147 SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~y~~~~~~~i~~~~~~~~ 194 (258)
T 3a1s_A 147 SSVTGEGLEELKEKIVEYAQKNTILHRMILDYGEKVESEIKKVENFLR 194 (258)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSSSCSCCCCCCCCHHHHHHHHHHHHHHT
T ss_pred EeeCCcCHHHHHHHHHHHhhccccCCCcccCCchhHHHHHHHHHHHHh
Confidence 999999999999988765421 11 114567778888887774
No 20
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.36 E-value=7.7e-13 Score=138.29 Aligned_cols=160 Identities=13% Similarity=0.056 Sum_probs=98.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCee-----eecCCCCCCC----------------------Ccccc-----------eee
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFR-----EMDAFKGRSQ----------------------TTKGI-----------WMA 43 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfs-----ims~~~~r~Q----------------------TTrGi-----------w~~ 43 (772)
|+|+|.||+|||||+|+|.|.+|. +++ ..++ ||+.. +.|
T Consensus 29 i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t---~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g 105 (299)
T 2aka_B 29 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT---RRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSC---SSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred EEEEeCCCCCHHHHHHHHHCCCcCCCCCCccc---ccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999986 433 2344 66652 111
Q ss_pred ----Eec---------CCCCcEEEEecCCCCCcCC---CCCccHHHHHHHHHHhhcccEEE-EeeccccccccccCCH--
Q 004126 44 ----RCA---------GIEPCTLIMDLEGTDGRER---GEDDTAFEKQSALFALAVSDIVL-INMWCHDIGREQAANK-- 104 (772)
Q Consensus 44 ----i~~---------~~~~qil~lDteG~~s~er---~e~~~~fe~k~alfALa~sDvli-iNl~~~dig~~~~~n~-- 104 (772)
+.+ ....++.|+||||+..... .++.....+..+...+..++.+| +.+...+ + .....
T Consensus 106 ~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-~--~~~~~~~ 182 (299)
T 2aka_B 106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-D--LANSDAL 182 (299)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS-C--GGGCHHH
T ss_pred cCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCc-c--hhhhHHH
Confidence 111 1136899999999975432 11111244556667777777665 3343321 1 11111
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc-hHHHHHHHHHHH---hhcCCCCCCccCCCchhhHHHHHh
Q 004126 105 PLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN-LEPVLREDIQKI---WDSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 105 ~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~-l~~~l~~~l~~i---w~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
.+++.+ .+...|+++|+||+|+.+... ..+.+...+..+ |..+...|+..+.+++++|+....
T Consensus 183 ~~~~~~--------~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 183 KIAKEV--------DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHHH--------CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHHHh--------CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 122222 225789999999999764432 333333211111 556889999999999999987654
No 21
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.36 E-value=3.9e-12 Score=123.61 Aligned_cols=161 Identities=8% Similarity=0.002 Sum_probs=92.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCee-eecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFR-EMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfs-ims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|.|+|.+|+|||||+|+|+|.+|. ..+ +.+.||+.+..... +..+.++||||+.........+.-........
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~~~~~~~---~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 26 IALAGRSNVGKSSFINSLINRKNLARTS---SKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC----------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCccccC---CCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 789999999999999999999853 333 45677887655443 35899999999764332211011111222222
Q ss_pred hhc---ccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH----hh
Q 004126 81 LAV---SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI----WD 153 (772)
Q Consensus 81 La~---sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i----w~ 153 (772)
+.. +|++++.+...+.- ......+++.+.+ ...|+++|+||+|+.+.+.+.....+..+.+ ..
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~--------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAP--SNDDVQMYEFLKY--------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHHH--------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HhhhhcCCEEEEEEECCCCC--CHHHHHHHHHHHH--------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 333 48887766543211 1112223344433 6789999999999876655543322221112 12
Q ss_pred cCCCCCCccCCCchhhHHHHHhhcC
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
.+.+.|+..+.+++++|+.....++
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 4667899999999999998776553
No 22
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.36 E-value=1.1e-12 Score=148.79 Aligned_cols=157 Identities=17% Similarity=0.099 Sum_probs=107.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|.||+|||||||+|.|..+.+++ ..+.||++...+........+.++||||+........ ..+..+.++..+
T Consensus 246 V~ivG~pnvGKSSLln~L~~~~~a~vs---~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~v-e~~gi~~~~~~~ 321 (482)
T 1xzp_A 246 MVIVGKPNVGKSTLLNRLLNEDRAIVT---DIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLV-ERLGIERTLQEI 321 (482)
T ss_dssp EEEECCHHHHTCHHHHHHHHHTBCCCC---CSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTC-CCCCHHHHHHHH
T ss_pred EEEECcCCCcHHHHHHHHHCCCCCccC---CCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhH-HHHHHHHHHHHh
Confidence 789999999999999999999988776 4688999999888877778899999999862211111 222234556678
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHh-hcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-~~i~kpsa 160 (772)
..+|++|+.+...+.- ...+..+++. . ..+|+++|+||+|+.+.... +.+.+... | ..+...|+
T Consensus 322 ~~aD~vl~VvD~s~~~--s~~~~~il~~--------l--~~~piivV~NK~DL~~~~~~-~~~~~~~~--~~~~~i~iSA 386 (482)
T 1xzp_A 322 EKADIVLFVLDASSPL--DEEDRKILER--------I--KNKRYLVVINKVDVVEKINE-EEIKNKLG--TDRHMVKISA 386 (482)
T ss_dssp HHCSEEEEEEETTSCC--CHHHHHHHHH--------H--TTSSEEEEEEECSSCCCCCH-HHHHHHHT--CSTTEEEEEG
T ss_pred hcccEEEEEecCCCCC--CHHHHHHHHH--------h--cCCCEEEEEECcccccccCH-HHHHHHhc--CCCcEEEEEC
Confidence 8999998877543321 1111222211 1 36789999999998643222 12222111 2 14667899
Q ss_pred ccCCCchhhHHHHHhhc
Q 004126 161 HMETPLSEFFNVEVVAL 177 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~L 177 (772)
.++.+++++|+.....+
T Consensus 387 ktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 387 LKGEGLEKLEESIYRET 403 (482)
T ss_dssp GGTCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999876544
No 23
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.35 E-value=1.2e-12 Score=136.60 Aligned_cols=178 Identities=12% Similarity=0.028 Sum_probs=111.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|.+|+|||||+|+|.|..+.+.. .+.+|.....+.....+..+.++||||..+..... ..-.........
T Consensus 6 i~lvG~~g~GKTTL~n~l~g~~~~~~~----~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~~~ 79 (271)
T 3k53_A 6 VALVGNPNVGKTTIFNALTGLRQHVGN----WPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS--IDELIARNFILD 79 (271)
T ss_dssp EEEEECSSSSHHHHHHHHHTTCEEEEE----CTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC--HHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCCcccCC----CCCeEEEeeEEEEEECCceEEEEeCCCccccccCC--HHHHHHHHhhhc
Confidence 789999999999999999999996543 57788888888877777789999999998533221 111111122233
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHHhhcCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~iw~~i~kp 158 (772)
..+|++++.+...+. ..+..+...+.+ ....|+++|+||+|+.+..... ..+.+. +--.+.+.
T Consensus 80 ~~~d~vi~v~D~~~~----~~~~~~~~~~~~-------~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~---lg~~~~~~ 145 (271)
T 3k53_A 80 GNADVIVDIVDSTCL----MRNLFLTLELFE-------MEVKNIILVLNKFDLLKKKGAKIDIKKMRKE---LGVPVIPT 145 (271)
T ss_dssp TCCSEEEEEEEGGGH----HHHHHHHHHHHH-------TTCCSEEEEEECHHHHHHHTCCCCHHHHHHH---HSSCEEEC
T ss_pred cCCcEEEEEecCCcc----hhhHHHHHHHHh-------cCCCCEEEEEEChhcCcccccHHHHHHHHHH---cCCcEEEE
Confidence 679998776644321 112222233333 1238999999999864332222 222222 22346788
Q ss_pred CCccCCCchhhHHHHHhhcCCCc---cchhHHHHHHHHHHhhhc
Q 004126 159 QAHMETPLSEFFNVEVVALSSFE---EKEELFKEQVASLRQRFY 199 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lph~~---~~~~~F~~~v~~Lr~~f~ 199 (772)
|+..+.++.++|+.....++... .-+..|.+++++..+++.
T Consensus 146 Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~ 189 (271)
T 3k53_A 146 NAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHIS 189 (271)
T ss_dssp BGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHH
Confidence 99999999999998876654321 122334444444444443
No 24
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.35 E-value=1.3e-12 Score=145.88 Aligned_cols=164 Identities=14% Similarity=0.120 Sum_probs=107.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCC-CCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERG-EDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~-e~~~~fe~k~alfA 80 (772)
|+|+|.||+|||||+|+|.|..+.+++ ..+.||++.........+..+.++||||...+.+. +....|....++.+
T Consensus 178 i~lvG~~nvGKSSLin~l~~~~~~~~~---~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 254 (436)
T 2hjg_A 178 FCLIGRPNVGKSSLVNAMLGEERVIVS---NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 254 (436)
T ss_dssp EEEECSTTSSHHHHHHHHHTSTTEEEC------------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHhCCCceeec---CCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHH
Confidence 789999999999999999999998776 36789999887777666778999999998644332 11134544445678
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHH-----hhc
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKI-----WDS 154 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~i-----w~~ 154 (772)
+..+|++|+.+...+-- ...+..++..+.+ ..+++++|+||+|+.+.+... +.+.+.+... |..
T Consensus 255 ~~~ad~~llv~D~~~~~--s~~~~~~~~~~~~--------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (436)
T 2hjg_A 255 IDRSEVVAVVLDGEEGI--IEQDKRIAGYAHE--------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 324 (436)
T ss_dssp HHHCSEEEEEEETTTCC--CHHHHHHHHHHHH--------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSC
T ss_pred HHhCCEEEEEEcCCcCC--cHHHHHHHHHHHH--------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCC
Confidence 88999998876553311 1122233444433 678999999999976543321 2222222222 445
Q ss_pred CCCCCCccCCCchhhHHHHHhhcC
Q 004126 155 VPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
+...|+.++.+++++|+.....+.
T Consensus 325 ~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 325 ILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHHH
Confidence 678899999999999998776554
No 25
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.34 E-value=2.2e-11 Score=132.33 Aligned_cols=184 Identities=20% Similarity=0.131 Sum_probs=117.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|.+|+|||||+|.|.|..+.+- +.+-||++...+........+.++||||.....-.+. ...+++... ++
T Consensus 170 v~lvG~~gvGKSTLin~L~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-~~~~~~~~~-~~ 243 (357)
T 2e87_A 170 VVIAGHPNVGKSTLLKALTTAKPEIA----SYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISER-NEIEKQAIL-AL 243 (357)
T ss_dssp EEEECSTTSSHHHHHHHHCSSCCEEE----CCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTS-CHHHHHHHH-GG
T ss_pred EEEECCCCCCHHHHHHHHhCCCCccC----CCCCeeeceeEEEEEecCceEEEEeCCCccccchhhh-hHHHHHHHH-HH
Confidence 78999999999999999999986543 3577899988877765667899999999975443332 445544433 55
Q ss_pred h-cccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCC
Q 004126 82 A-VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a-~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa 160 (772)
. .+|++|+.+...+. .+-+..-...+++....++. ..|+++|+||+|..+...+.+ +.+.+...-..+...|+
T Consensus 244 ~~~ad~illV~D~s~~---~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~iSA 317 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEH---CGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKR-LEKFVKEKGLNPIKISA 317 (357)
T ss_dssp GGTCSEEEEEECTTCT---TSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHH-HHHHHHHTTCCCEECBT
T ss_pred HhcCCEEEEEEeCCcc---ccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHH-HHHHHHhcCCCeEEEeC
Confidence 4 58988776653221 11122222222222222332 689999999999987655432 22222222224667899
Q ss_pred ccCCCchhhHHHHHhhcCCCccchhHHHHHHHHHHhhhc
Q 004126 161 HMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFY 199 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lph~~~~~~~F~~~v~~Lr~~f~ 199 (772)
..+.+++++|+.....+... .+.-+...++..-+||.
T Consensus 318 ~~g~gi~~l~~~i~~~l~~~--~~~~~~~~~~~~l~r~~ 354 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRPL--AEKVAREKIERELRRYR 354 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTTTT
T ss_pred CCCcCHHHHHHHHHHHHHHH--HhhhcchhHHHHHHhhh
Confidence 99999999999988877322 22334445555555543
No 26
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.33 E-value=2.5e-12 Score=124.30 Aligned_cols=177 Identities=13% Similarity=0.034 Sum_probs=100.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|.+|+|||||+|+|.|..+.+.. .+.+|.....+.....+..+.++||||......... ....... .+.-
T Consensus 10 i~lvG~~gvGKStL~~~l~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-~~~~~~~-~~~~ 83 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGENVYIGN----WPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI-DEIIARD-YIIN 83 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTTCEEEEE----CTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH-HHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCccccC----CCCeeccceEEEEEeCCcEEEEEECCCcCccccccH-HHHHHHH-HHhc
Confidence 789999999999999999998876543 466777777776666678899999999873321100 1111111 1122
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCc
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 161 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~ 161 (772)
..+|++++.+...+. . ....++..+.+ ...|+++|.||.|......+.....+..+.+--.+.+.|+.
T Consensus 84 ~~~~~~i~v~d~~~~---~-~~~~~~~~~~~--------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL---E-RNLYLTLQLME--------MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAA 151 (188)
T ss_dssp HCCSEEEEEEEGGGH---H-HHHHHHHHHHT--------TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGG
T ss_pred cCCCEEEEEecchhH---H-HHHHHHHHHHh--------cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEec
Confidence 458988765543221 1 11112222222 57889999999986422211111111111222246678999
Q ss_pred cCCCchhhHHHHHhhcCCCccchhHHHHHHHHHHhh
Q 004126 162 METPLSEFFNVEVVALSSFEEKEELFKEQVASLRQR 197 (772)
Q Consensus 162 ~~~~l~dlf~~~~~~Lph~~~~~~~F~~~v~~Lr~~ 197 (772)
.+.+++++|+.....++...- ++.|..+++++.++
T Consensus 152 ~~~~v~~l~~~i~~~~~~~~~-~~~~~~~~~~~~~~ 186 (188)
T 2wjg_A 152 KKMGIEELKKAISIAVKDKKT-AEIKYPNFEPYIKK 186 (188)
T ss_dssp GTBSHHHHHHHHHHHHTTC-----------------
T ss_pred CCCCHHHHHHHHHHHHHhccC-ccCCCHHHHHHHHh
Confidence 999999999998887776542 23555555555443
No 27
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.33 E-value=8.3e-13 Score=148.19 Aligned_cols=160 Identities=14% Similarity=0.154 Sum_probs=99.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|||++|||||||+|+|.|.++++++ ..+.||+....+.....+..+.++||||+...... .+...+..+..++
T Consensus 26 V~lvG~~nvGKSTL~n~l~~~~~~~v~---~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~--~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 26 VAIVGRPNVGKSTIFNRIAGERISIVE---DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP--FLAQIRQQAEIAM 100 (456)
T ss_dssp EEEECSSSSSHHHHHHHHEEEEEC--------------CEEEECTTCSSCCEEECCCC------C--CHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhCCCCcccC---CCCCcceeEEEEEEEECCceEEEEECCCCCCcchH--HHHHHHHHHHhhH
Confidence 899999999999999999999999876 36889999999888877889999999999732221 3566677888999
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCc
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 161 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~ 161 (772)
..+|++|+.+...+ | .......+.+.+. ...+|+++|+||+|....+. ...+....-+..+.+.|+.
T Consensus 101 ~~ad~il~VvD~~~-~-~~~~d~~l~~~l~--------~~~~pvilV~NK~D~~~~~~---~~~e~~~lg~~~~~~iSA~ 167 (456)
T 4dcu_A 101 DEADVIIFMVNGRE-G-VTAADEEVAKILY--------RTKKPVVLAVNKLDNTEMRA---NIYDFYSLGFGEPYPISGT 167 (456)
T ss_dssp HHCSEEEEEEESSS-C-SCHHHHHHHHHHT--------TCCSCEEEEEECC------------CCSGGGSSSSEEECCTT
T ss_pred hhCCEEEEEEeCCC-C-CChHHHHHHHHHH--------HcCCCEEEEEECccchhhhh---hHHHHHHcCCCceEEeecc
Confidence 99999988765422 1 1111222223322 26789999999998753221 0000000012334577899
Q ss_pred cCCCchhhHHHHHhhcCC
Q 004126 162 METPLSEFFNVEVVALSS 179 (772)
Q Consensus 162 ~~~~l~dlf~~~~~~Lph 179 (772)
.+.++.++++.....+|.
T Consensus 168 ~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TCTTHHHHHHHHHTTGGG
T ss_pred cccchHHHHHHHHhhccc
Confidence 999999999998877764
No 28
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.33 E-value=5e-12 Score=133.06 Aligned_cols=173 Identities=14% Similarity=0.033 Sum_probs=111.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|.||+|||||+|+|.|.++.+. ..+.||.....+.... ...+.++||||..+-... . .+...+...+
T Consensus 6 I~lvG~~nvGKSTL~n~L~g~~~~v~----~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~---~-~~e~v~~~~~ 76 (272)
T 3b1v_A 6 IALIGNPNSGKTSLFNLITGHNQRVG----NWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY---S-PEAKVARDYL 76 (272)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCCCCC----SSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS---S-HHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCCCCccc----CCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCC---C-hHHHHHHHHH
Confidence 78999999999999999999886543 3577888887777776 778999999999854322 1 1122222222
Q ss_pred --hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHHhhcCC
Q 004126 82 --AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKIWDSVP 156 (772)
Q Consensus 82 --a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~iw~~i~ 156 (772)
..+|++|+.+...+.. .+..+...+.+ ...|+++|+||+|......+. ..+.+.+ --.+.
T Consensus 77 ~~~~~d~vi~V~D~t~~e----~~~~~~~~l~~--------~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g~~vi 141 (272)
T 3b1v_A 77 LSQRADSILNVVDATNLE----RNLYLTTQLIE--------TGIPVTIALNMIDVLDGQGKKINVDKLSYHL---GVPVV 141 (272)
T ss_dssp HTTCCSEEEEEEEGGGHH----HHHHHHHHHHH--------TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH---TSCEE
T ss_pred hcCCCCEEEEEecCCchH----hHHHHHHHHHh--------cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc---CCCEE
Confidence 3699887665543321 12223333333 578999999999864222111 2233222 22477
Q ss_pred CCCCccCCCchhhHHHHHhhcCCCc------cchhHHHHHHHHHHhhh
Q 004126 157 KPQAHMETPLSEFFNVEVVALSSFE------EKEELFKEQVASLRQRF 198 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lph~~------~~~~~F~~~v~~Lr~~f 198 (772)
+.|+..+.+++++|+.....++... .-...+.+.+..|...+
T Consensus 142 ~~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~~~~~e~~i~~~~~~~ 189 (272)
T 3b1v_A 142 ATSALKQTGVDQVVKKAAHTTTSTVGDLAFPIYDDRLEAAISQILEVL 189 (272)
T ss_dssp ECBTTTTBSHHHHHHHHHHSCTTTCCSCCCCCCCHHHHHHHHHHHHHH
T ss_pred EEEccCCCCHHHHHHHHHHHHhhccCCCccCCCCHHHHHHHHHHHHHH
Confidence 8899999999999999887664321 11334555566666555
No 29
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.32 E-value=1.5e-12 Score=145.35 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=102.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCC--CCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERG--EDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~--e~~~~fe~k~alf 79 (772)
|+|||++|+|||||+|+|.|..+.+++ ..+.||+....+.....+..+.++||||....... +....|....+..
T Consensus 183 vaivG~~gvGKSTLln~l~g~~~~~v~---~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 183 VAIVGRPNVGKSTLFNAILNKERALVS---PIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp EEEECSTTSSHHHHHHHHHTSTTEEEC---CCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCcccccC---CCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHH
Confidence 789999999999999999999988887 46889999887777666668899999998522211 0011222234566
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc--hH---HHHHHHHHHH-hh
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN--LE---PVLREDIQKI-WD 153 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~--l~---~~l~~~l~~i-w~ 153 (772)
++..+|++++.+...+-- ...+..+...+.+ ..+++++|+||+|+.+.+. .+ +.+.+.+... |.
T Consensus 260 ~i~~ad~vllv~d~~~~~--~~~~~~i~~~l~~--------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGI--TRQDQRMAGLMER--------RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS 329 (439)
T ss_dssp HHHHCSEEEEEEETTTCC--CHHHHHHHHHHHH--------TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred HHhhCCEEEEEEeCCCCC--CHHHHHHHHHHHH--------cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCC
Confidence 788999998766543211 1111222233333 5789999999999764332 22 2222222111 34
Q ss_pred cCCCCCCccCCCchhhHHHHHhhcC
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
.+...|+..+.+++++|+.....++
T Consensus 330 ~~~~~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 330 PLIFTSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667899999999999998876554
No 30
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.31 E-value=7e-12 Score=140.66 Aligned_cols=164 Identities=14% Similarity=0.135 Sum_probs=112.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCC-ccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGED-DTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~-~~~fe~k~alfA 80 (772)
|+++|.+|+|||||+|+|.|....+++ ..+.||+..........+..+.++||||+..+.+-.. ...|....++.+
T Consensus 198 i~ivG~~~vGKSslin~l~~~~~~~~~---~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 274 (456)
T 4dcu_A 198 FCLIGRPNVGKSSLVNAMLGEERVIVS---NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 274 (456)
T ss_dssp EEEECSTTSSHHHHHHHHHTSTTEEEC---C------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHH
T ss_pred eEEecCCCCCHHHHHHHHhCCCccccC---CCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHH
Confidence 689999999999999999998877766 4688999988777776677899999999875443211 134555556778
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhch-HHHHHHHHHHH-----hhc
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL-EPVLREDIQKI-----WDS 154 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l-~~~l~~~l~~i-----w~~ 154 (772)
+..+|++|+.+...+ + .......+++.+.+ ...|+++|+||+|+.+.+.. .+.+.+.+... |..
T Consensus 275 ~~~ad~~llviD~~~-~-~~~~~~~~~~~~~~--------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 275 IDRSEVVAVVLDGEE-G-IIEQDKRIAGYAHE--------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp HHHCSEEEEEEETTT-C-CCHHHHHHHHHHHH--------TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred HhhCCEEEEEEeCCC-C-cCHHHHHHHHHHHH--------cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC
Confidence 899999988776533 1 11222334444444 67899999999997643322 23333444433 456
Q ss_pred CCCCCCccCCCchhhHHHHHhhcC
Q 004126 155 VPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
+...|+..+.+++++|+.....++
T Consensus 345 ~~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 345 ILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEEEcCCCCcCHHHHHHHHHHHHH
Confidence 778899999999999998877654
No 31
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.31 E-value=4.2e-12 Score=121.43 Aligned_cols=153 Identities=15% Similarity=0.039 Sum_probs=94.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH-
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA- 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA- 80 (772)
|+|+|++|+|||||+|+|.|..+.+. ..+.+|+....+.....+..+.++||||....... . .....+...
T Consensus 6 v~lvG~~gvGKStL~~~l~~~~~~~~----~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---~-~~~~~~~~~~ 77 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGENVYIG----NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN---S-IDEIIARDYI 77 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCCSSSCC---------CCCCCEEEEEETTEEEEEEECCCCSCSSSS---S-HHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCeecc----CCCCcceeeeEEEEEECCcEEEEEECCCcccCCCc---c-hhHHHHHHHH
Confidence 78999999999999999999887542 24667777766666655678999999998743211 1 111222222
Q ss_pred -hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhch---HHHHHHHHHHHhhcCC
Q 004126 81 -LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL---EPVLREDIQKIWDSVP 156 (772)
Q Consensus 81 -La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l---~~~l~~~l~~iw~~i~ 156 (772)
...+|++++.+...+. . ....++..+.+ ...|+++|.||+|+.....+ .+.+.+. ....+.
T Consensus 78 ~~~~~~~~i~v~D~~~~---~-~~~~~~~~~~~--------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~ 142 (165)
T 2wji_A 78 INEKPDLVVNIVDATAL---E-RNLYLTLQLME--------MGANLLLALNKMDLAKSLGIEIDVDKLEKI---LGVKVV 142 (165)
T ss_dssp HHHCCSEEEEEEETTCH---H-HHHHHHHHHHH--------TTCCEEEEEECHHHHHHTTCCCCHHHHHHH---HTSCEE
T ss_pred hcCCCCEEEEEecCCch---h-HhHHHHHHHHh--------cCCCEEEEEEchHhccccChhhHHHHHHHH---hCCCEE
Confidence 2478998776544321 1 11112222222 46889999999986322111 1222222 222466
Q ss_pred CCCCccCCCchhhHHHHHhhc
Q 004126 157 KPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~L 177 (772)
+.|+..+.+++++|+.....+
T Consensus 143 ~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 143 PLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp ECBGGGTBSHHHHHHHHHHHT
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 789999999999999876543
No 32
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.29 E-value=2.1e-12 Score=124.87 Aligned_cols=159 Identities=16% Similarity=0.033 Sum_probs=103.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|++|+|||||+|+|.|..+.+++ ..+.||++...+.....+.++.++||||..... .. ...+....+...+
T Consensus 7 i~ivG~~g~GKStLl~~l~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~-~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGREAAIVT---DIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS-DE-VERIGIERAWQEI 81 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCCSCCC---SSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS-SH-HHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCcceee---CCCCceeceeeEEEEECCeEEEEEECCCcccch-hH-HHHHHHHHHHHHH
Confidence 789999999999999999999887665 467899988877776666678999999986321 10 0111122244567
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh-chHHHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e-~l~~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.+...+.... ....++..+.+ ......|+++|+||+|+.+.. .... .....+...|+
T Consensus 82 ~~ad~~i~v~D~~~~~s~--~~~~~~~~~~~-----~~~~~~p~ilv~NK~Dl~~~~~~~~~-------~~~~~~~~~SA 147 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAV--DPAEIWPEFIA-----RLPAKLPITVVRNKADITGETLGMSE-------VNGHALIRLSA 147 (172)
T ss_dssp HTCSEEEEEEETTTCCCC--SHHHHCHHHHH-----HSCTTCCEEEEEECHHHHCCCCEEEE-------ETTEEEEECCT
T ss_pred HhCCEEEEEEECCCCCCH--HHHHHHHHHHH-----hcccCCCEEEEEECccCCcchhhhhh-------ccCCceEEEeC
Confidence 899999887655432211 11222232322 112468899999999863211 1000 01224667899
Q ss_pred ccCCCchhhHHHHHhhcCC
Q 004126 161 HMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lph 179 (772)
..+.+++++|+.....++.
T Consensus 148 ~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 148 RTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTCTTHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHhhh
Confidence 9999999999998877754
No 33
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.29 E-value=3.8e-12 Score=131.46 Aligned_cols=125 Identities=13% Similarity=0.061 Sum_probs=81.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHH---HHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFE---KQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe---~k~al 78 (772)
|++||++|+|||||+|+|+|.++.+.+. +...||+....+.....+.++.|+||||+........ +.+. .+...
T Consensus 24 I~lvG~~g~GKSSlin~l~~~~~~~~~~--~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~~~~i~~~~~ 100 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSILGQRRFFSRL--GATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKT-DPGCEERGHCYL 100 (247)
T ss_dssp EEEESSTTSSHHHHHHHHHTSCCC-----------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHH-STTSHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhCCCCccccC--CCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcH-HHHHHHHHHHHH
Confidence 7899999999999999999999987663 1223999998888887888999999999974433210 1222 22233
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC--CCccEEEEEeCCCCCC
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRTP 136 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~--~k~~llfVIrd~d~t~ 136 (772)
.+...+|++|+.+. +++.......+++. ...+|+. .+.|+++|+||.|+.+
T Consensus 101 ~~~~~~d~il~V~d---~~~~~~~~~~~~~~----l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 101 LSAPGPHALLLVTQ---LGRFTAQDQQAVRQ----VRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHTTCCSEEEEEEE---TTBCCHHHHHHHHH----HHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred hcCCCCCEEEEEEe---CCCCCHHHHHHHHH----HHHHhChhhhccEEEEEEchHhcCC
Confidence 44589999987664 44333222223333 3445554 3788999999998753
No 34
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.28 E-value=2.3e-12 Score=145.38 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=97.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|.||+|||||+|+|.|..+.+++ ..+.||+.............+.++||||+..... . ...+..+.+...+
T Consensus 227 V~ivG~~nvGKSSLln~L~~~~~a~v~---~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~-~-ve~~gi~~~~~~~ 301 (462)
T 3geh_A 227 VAIVGRPNVGKSSLLNAWSQSDRAIVT---DLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD-Q-VEKIGVERSRQAA 301 (462)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHBSCCS---CCTTCCHHHHHHEEEETTEEEEECC----------------------CCC
T ss_pred EEEEcCCCCCHHHHHHHHhCCCccccc---CCCCeeEEEEEEEEEECCEEEEEEECCccccchh-H-HHHHHHHHHhhhh
Confidence 789999999999999999999988876 3588999987666666677899999999963221 1 1233334566678
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCc
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 161 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~ 161 (772)
..+|++|+.+...+.- ......+++.+ ..+|+++|+||+|+.+...... +. .+.. ...+...|+.
T Consensus 302 ~~aD~vl~VvD~s~~~--~~~~~~i~~~l----------~~~piivV~NK~Dl~~~~~~~~-~~-~~~~-~~~~i~iSAk 366 (462)
T 3geh_A 302 NTADLVLLTIDAATGW--TTGDQEIYEQV----------KHRPLILVMNKIDLVEKQLITS-LE-YPEN-ITQIVHTAAA 366 (462)
T ss_dssp CSCSEEEEEEETTTCS--CHHHHHHHHHH----------TTSCEEEEEECTTSSCGGGSTT-CC-CCTT-CCCEEEEBTT
T ss_pred hcCCEEEEEeccCCCC--CHHHHHHHHhc----------cCCcEEEEEECCCCCcchhhHH-HH-Hhcc-CCcEEEEECC
Confidence 8899998876543311 11112222222 2368999999999875544320 00 0000 1135567899
Q ss_pred cCCCchhhHHHHHhhcCCC
Q 004126 162 METPLSEFFNVEVVALSSF 180 (772)
Q Consensus 162 ~~~~l~dlf~~~~~~Lph~ 180 (772)
.+.+++++|+.....+.+.
T Consensus 367 tg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 367 QKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp TTBSHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999887766544
No 35
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.27 E-value=2.8e-11 Score=114.82 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=85.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.|..+....+ ...+|..............+.++||||....+.. ......+
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~ 75 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGKQERDLHE---QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKS--------WSQESCL 75 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC-----CC---CSSSSEEEEEEEETTEEEEEEEECCC-------C--------HHHHHTT
T ss_pred EEEECCCCccHHHHHHHHhcCCCccccC---ccccceeEEEEEECCEEEEEEEEecCCCCccchh--------hhHHhhc
Confidence 7899999999999999999999986553 2334433222222223347899999998632111 1223345
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.....+.. ...-++...+...........|+++|+||+|+.+...+. +...+.....--.+.+.|+
T Consensus 76 ~~~~~~i~v~d~~~~~-----s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 150 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRG-----SFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSA 150 (175)
T ss_dssp TSCSEEEEEEETTCHH-----HHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBT
T ss_pred ccCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEec
Confidence 6788887755432211 111111111111111122478999999999986543332 1222222222224678899
Q ss_pred ccCCCchhhHHHHHhhc
Q 004126 161 HMETPLSEFFNVEVVAL 177 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~L 177 (772)
..+.+++++|+.....+
T Consensus 151 ~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 151 TLQHNVAELFEGVVRQL 167 (175)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999876554
No 36
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.4e-11 Score=135.63 Aligned_cols=118 Identities=16% Similarity=0.069 Sum_probs=83.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|||+||+|||||+|+|.|.+..+- ..+.||+....|+...++.++.|+||||+..... + ..-+....+..+
T Consensus 75 V~ivG~PNvGKSTL~n~Lt~~~~~v~----~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~-~--~~~~g~~~l~~i 147 (376)
T 4a9a_A 75 VGFVGFPSVGKSTLLSKLTGTESEAA----EYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK-D--GRGRGKQVIAVA 147 (376)
T ss_dssp EEEECCCCHHHHHHHHHHHSBCCCGG----GTCSSCCCEEEEEEEETTEEEEEEECGGGCCC--------CHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCccc----CCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch-h--hhHHHHHHHHHH
Confidence 79999999999999999999996653 4799999999999999999999999999973221 1 222335677888
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC--CCccEEEEEeCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTR 134 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~--~k~~llfVIrd~d~ 134 (772)
..||++++.+.+.+.- . -.+.+ +.-|..+.. .++|..+++|+.|.
T Consensus 148 ~~ad~il~vvD~~~p~----~---~~~~i-~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPL----H---HKQII-EKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHCSEEEEEEETTSHH----H---HHHHH-HHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HhcCccccccccCccH----H---HHHHH-HHHHHHhhHhhccCChhhhhhHhhh
Confidence 9999998887653211 1 11111 112333332 45667788999864
No 37
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.23 E-value=6.1e-11 Score=113.90 Aligned_cols=157 Identities=10% Similarity=-0.007 Sum_probs=95.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|+|..|.. ....||............ ..+.++||||..... . ....
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~---------~~~~ 71 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNHFVD-----EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-A---------MRDQ 71 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSCCC-----CCCTTCCEEEEEEEEETTEEEEEEEEECCCC---C-T---------THHH
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC-----CCCCCchheEEEEEEECCcEEEEEEEECCCcHHHH-H---------HHHH
Confidence 6899999999999999999988743 234566554444333333 346789999965211 1 1123
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 159 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kps 159 (772)
.+..+|++++.+...+.. ...-+....+...+.......|+++|+||.|+.+.+...+.+.+.....--.+.+.|
T Consensus 72 ~~~~~~~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 146 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTK-----SFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETS 146 (189)
T ss_dssp HHHHCSEEEEEEETTCHH-----HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECC
T ss_pred HHhcCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 345688887755443211 111122222222223333678999999999986544333333333333323467789
Q ss_pred CccCCCchhhHHHHHhhcC
Q 004126 160 AHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~Lp 178 (772)
+..+.+++++|+.....+.
T Consensus 147 a~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 147 AKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998776654
No 38
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.23 E-value=1.2e-11 Score=142.52 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=82.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCee--eecCCCCCCCCcccceeeEecCCC-----------------------------
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFR--EMDAFKGRSQTTKGIWMARCAGIE----------------------------- 49 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfs--ims~~~~r~QTTrGiw~~i~~~~~----------------------------- 49 (772)
+|+|+|.+|+|||||+|+|+|.++. .++ ..+|||+- .++.....
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs---~~p~T~~~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQEVPGSRVG---PEPTTDCF--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCCSSCCCC---SSCCCCSE--EEEECCSSSEEECCC------------------CCCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCccccCccC---CCCccceE--EEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 4899999999999999999999997 344 47888772 22222111
Q ss_pred ------------CcEEEEecCCCCCcCCCCCccHH-HHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHh
Q 004126 50 ------------PCTLIMDLEGTDGRERGEDDTAF-EKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMR 116 (772)
Q Consensus 50 ------------~qil~lDteG~~s~er~e~~~~f-e~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~ 116 (772)
.+++|+||||++..........+ ....+...+..+|++|+.+...+.+... ....+++.+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~-~~~~~l~~l------ 214 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISD-EFSEAIGAL------ 214 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCH-HHHHHHHHT------
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCH-HHHHHHHHH------
Confidence 37999999999854332111111 2456677788999998877664432111 111122222
Q ss_pred hcCCCCccEEEEEeCCCCCChhchHHH
Q 004126 117 LFSPRKTTLMFVIRDKTRTPLENLEPV 143 (772)
Q Consensus 117 lf~~~k~~llfVIrd~d~t~~e~l~~~ 143 (772)
.....++++|+||+|..+.+.+.+.
T Consensus 215 --~~~~~pvilVlNK~Dl~~~~el~~~ 239 (550)
T 2qpt_A 215 --RGHEDKIRVVLNKADMVETQQLMRV 239 (550)
T ss_dssp --TTCGGGEEEEEECGGGSCHHHHHHH
T ss_pred --HhcCCCEEEEEECCCccCHHHHHHH
Confidence 2256889999999998876665543
No 39
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.23 E-value=4.6e-12 Score=137.48 Aligned_cols=161 Identities=15% Similarity=0.058 Sum_probs=92.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCee-----eecCCCCCCC----------------------Cccc-----------ce--
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFR-----EMDAFKGRSQ----------------------TTKG-----------IW-- 41 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfs-----ims~~~~r~Q----------------------TTrG-----------iw-- 41 (772)
|+|+|.||+|||||||+|.|.+|. +++ .+|+ ||++ .+
T Consensus 34 I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t---~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 34 IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT---RRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp EEEECBTTSSHHHHHHTTTTSCCSCCCSSSCC---CSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCCCCccc---ccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 799999999999999999999986 444 3455 7765 22
Q ss_pred --eeEecC---------CCCcEEEEecCCCCCcCCCC---CccHHHHHHHHHHh-hcccEEEEeeccccccccccCCHHH
Q 004126 42 --MARCAG---------IEPCTLIMDLEGTDGRERGE---DDTAFEKQSALFAL-AVSDIVLINMWCHDIGREQAANKPL 106 (772)
Q Consensus 42 --~~i~~~---------~~~qil~lDteG~~s~er~e---~~~~fe~k~alfAL-a~sDvliiNl~~~dig~~~~~n~~l 106 (772)
.|+... ...++.|+||||+...+.+. +.....+......+ ..++++++.+.... + .. +...
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~-~--~~-~~~~ 186 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-D--LA-NSDA 186 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS-C--GG-GCHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC-c--cc-hhHH
Confidence 222211 24689999999998544321 11123334444444 34556655443321 1 11 1111
Q ss_pred HHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc-hHHHHHHHHHH---HhhcCCCCCCccCCCchhhHHHHH
Q 004126 107 LKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN-LEPVLREDIQK---IWDSVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 107 Lktv~evnl~lf~~~k~~llfVIrd~d~t~~e~-l~~~l~~~l~~---iw~~i~kpsa~~~~~l~dlf~~~~ 174 (772)
++.+.+ ..+...++++|+||+|..+... ..+.+...... -|..+...|+..+.+++++++...
T Consensus 187 ~~i~~~-----~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~ 253 (353)
T 2x2e_A 187 LKVAKE-----VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA 253 (353)
T ss_dssp HHHHHH-----HCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHH
T ss_pred HHHHHH-----hCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHH
Confidence 112211 2235789999999999764332 33222211100 145677888888888888877543
No 40
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.21 E-value=1.8e-11 Score=136.65 Aligned_cols=159 Identities=13% Similarity=0.018 Sum_probs=101.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCC-cEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEP-CTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~-qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|+|..|+|||||+|+|.|..+...+ ..+.||............. .+.++||||.+... .. ...+.+.+...
T Consensus 37 I~IvG~~~vGKSTLin~L~~~~~~~~~---~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~--~l-~~~~~~~~~~~ 110 (423)
T 3qq5_A 37 IVVAGRRNVGKSSFMNALVGQNVSIVS---DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG--EL-GRLRVEKARRV 110 (423)
T ss_dssp EEEECSCSTTTTTTTTSSCC----------------CCCCEEEEEETTTEEEEEEECSSTTCCC--TT-CCCCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCccC---CCCCeeeeeEEEEEEECCCCeEEEEECcCCCccc--ch-hHHHHHHHHHH
Confidence 789999999999999999999998766 3577787776655554444 89999999997322 11 22333446677
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHH-HHhhcCCCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ-KIWDSVPKPQ 159 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~-~iw~~i~kps 159 (772)
+..+|++|+.+.. +. ......+++.+.+ .+.|+++|+||+|..+.+..+ ..+.+. .+--.+...|
T Consensus 111 l~~aD~vllVvD~---~~-~~~~~~~l~~l~~--------~~~piIvV~NK~Dl~~~~~~~--~~~~l~~~~g~~v~~vS 176 (423)
T 3qq5_A 111 FYRADCGILVTDS---AP-TPYEDDVVNLFKE--------MEIPFVVVVNKIDVLGEKAEE--LKGLYESRYEAKVLLVS 176 (423)
T ss_dssp HTSCSEEEEECSS---SC-CHHHHHHHHHHHH--------TTCCEEEECCCCTTTTCCCTH--HHHHSSCCTTCCCCCCS
T ss_pred HhcCCEEEEEEeC---CC-hHHHHHHHHHHHh--------cCCCEEEEEeCcCCCCccHHH--HHHHHHHHcCCCEEEEE
Confidence 8899999886643 32 2223334455544 578999999999986544331 111111 1122577889
Q ss_pred CccCCCchhhHHHHHhhcCCC
Q 004126 160 AHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~Lph~ 180 (772)
+..+.+++++|+.....+|..
T Consensus 177 Aktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSCCC
T ss_pred CCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999988654
No 41
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.18 E-value=2.2e-10 Score=107.89 Aligned_cols=161 Identities=14% Similarity=0.184 Sum_probs=94.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.+|+|||||+|+|.|.+|..... ...+.+++..+. .......+.++||||... . . ......+
T Consensus 6 i~v~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~~~~~~~--~~~~~~~~~~~Dt~G~~~---~----~---~~~~~~~ 72 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKGTFRESYI-PTVEDTYRQVIS--CDKSICTLQITDTTGSHQ---F----P---AMQRLSI 72 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTCCCCSSCC-CCSCEEEEEEEE--ETTEEEEEEEEECCSCSS---C----H---HHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCC-CCccccEEEEEE--ECCEEEEEEEEECCCchh---h----H---HHHHHhc
Confidence 7899999999999999999988753211 012223332211 111234689999999641 1 1 2233456
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC-CCccEEEEEeCCCCCChhchHHHHHHHHHHHhh-cCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD-SVPKPQ 159 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~-~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~-~i~kps 159 (772)
..+|++|+.+...+..... .-..++..+.+ .... ...|+++|+||+|+.+...+.....+.+..-+. .+...|
T Consensus 73 ~~~~~~i~v~d~~~~~~~~-~~~~~~~~i~~----~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 147 (172)
T 2erx_A 73 SKGHAFILVYSITSRQSLE-ELKPIYEQICE----IKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETS 147 (172)
T ss_dssp HHCSEEEEEEETTCHHHHH-TTHHHHHHHHH----HHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred ccCCEEEEEEECcCHHHHH-HHHHHHHHHHH----HhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEec
Confidence 6789988766543221111 11122222322 1111 468899999999976544433221222222222 466789
Q ss_pred CccCCCchhhHHHHHhhcCCC
Q 004126 160 AHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~Lph~ 180 (772)
+..+.+++++|+.....+.+.
T Consensus 148 a~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 148 AKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp TTTTBSHHHHHHHHHHTCCSS
T ss_pred CCCCcCHHHHHHHHHHHHhhh
Confidence 999999999999988877654
No 42
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.17 E-value=1e-10 Score=112.87 Aligned_cols=158 Identities=11% Similarity=0.012 Sum_probs=85.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecC-------------------CCCCCCCcccceeeEecCCC-------------
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDA-------------------FKGRSQTTKGIWMARCAGIE------------- 49 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~-------------------~~~r~QTTrGiw~~i~~~~~------------- 49 (772)
|.|+|.+|+|||||+|+|+|..|..-.. ..+++++|+..+.++.....
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNEN 89 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTT
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCc
Confidence 7899999999999999999987652100 00112333333333222110
Q ss_pred ---CcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEE
Q 004126 50 ---PCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLM 126 (772)
Q Consensus 50 ---~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~ll 126 (772)
..+.++||||.. +.. ......+..+|++|+.+...+.. -+..+.+....+......|++
T Consensus 90 ~~~~~~~i~Dt~G~~---~~~-------~~~~~~~~~~d~~i~v~D~~~~~--------s~~~~~~~~~~i~~~~~~pii 151 (208)
T 3clv_A 90 LCNIKFDIWDTAGQE---RYA-------SIVPLYYRGATCAIVVFDISNSN--------TLDRAKTWVNQLKISSNYIII 151 (208)
T ss_dssp TCEEEEEEEECTTGG---GCT-------TTHHHHHTTCSEEEEEEETTCHH--------HHHHHHHHHHHHHHHSCCEEE
T ss_pred cceeEEEEEECCCcH---HHH-------HHHHHHhcCCCEEEEEEECCCHH--------HHHHHHHHHHHHHhhCCCcEE
Confidence 578999999953 111 12334567899998766543211 111111111111111348999
Q ss_pred EEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCccCCCchhhHHHHHhhc
Q 004126 127 FVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 127 fVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
+|+||+|....+...+.+.+......-.+.+.|+..+.+++++|+.....+
T Consensus 152 lv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 152 LVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp EEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 999999932222222333444433323566789999999999998776543
No 43
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.17 E-value=8.6e-11 Score=110.48 Aligned_cols=160 Identities=9% Similarity=-0.059 Sum_probs=93.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.+|+|||||+|+|+|..+..... +...+|..............+.++||||.. +. +......+
T Consensus 6 i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~---~~-------~~~~~~~~ 73 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSNDFAENKE--PTIGAAFLTQRVTINEHTVKFEIWDTAGQE---RF-------ASLAPXYY 73 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEEETTEEEEEEEEEECCSG---GG-------GGGHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEECCCCh---hh-------hhhhhhhh
Confidence 6899999999999999999988763110 111112222222222233478999999954 11 11234456
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh---hchH-HHHHHHHHHHhhcCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL---ENLE-PVLREDIQKIWDSVPK 157 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~---e~l~-~~l~~~l~~iw~~i~k 157 (772)
..+|++|+.+...+.. ...-++...+..... .....|+++|+||+|+.+. ..+. +...+.....--.+.+
T Consensus 74 ~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~ 147 (170)
T 1ek0_A 74 RNAQAALVVYDVTKPQ-----SFIKARHWVKELHEQ-ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFE 147 (170)
T ss_dssp TTCSEEEEEEETTCHH-----HHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEE
T ss_pred ccCcEEEEEEecCChH-----HHHHHHHHHHHHHHh-cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 7899998766443211 111111111111111 1357889999999987543 2222 2222222222224677
Q ss_pred CCCccCCCchhhHHHHHhhcCC
Q 004126 158 PQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~Lph 179 (772)
.|+..+.+++++|+.....++.
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 148 TSAKTGENVNDVFLGIGEKIPL 169 (170)
T ss_dssp CCTTTCTTHHHHHHHHHTTSCC
T ss_pred EeCCCCCCHHHHHHHHHHHHhh
Confidence 8999999999999998877764
No 44
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.17 E-value=6e-11 Score=120.83 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=76.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHH---HHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAF---EKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~f---e~k~al 78 (772)
|+|+|++|+|||||+|+|+|..+..... +...||+....+.....+..+.++||||+....... ... ..+...
T Consensus 32 i~lvG~~g~GKStlin~l~g~~~~~~~~--~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~--~~~~~~~~~~~~ 107 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSILGRKVFHSGT--AAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPN--AETSKEIIRCIL 107 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTSCCSCC---------CCSCEEEEEEETTEEEEEEECCSCC-----C--HHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCccCC--CCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCH--HHHHHHHHHHHH
Confidence 7899999999999999999998854321 122688888877777677899999999998544321 222 223333
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC-CCccEEEEEeCCCCCChhchH
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTPLENLE 141 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~-~k~~llfVIrd~d~t~~e~l~ 141 (772)
.+...+|++|+.+.. ++........++.+. ..|+. ...|+++|+|++|..+.+.+.
T Consensus 108 ~~~~~~~~~l~v~d~---~~~~~~~~~~l~~~~----~~~~~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 108 LTSPGPHALLLVVPL---GRYTEEEHKATEKIL----KMFGERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HTTTCCSEEEEEEET---TCCSSHHHHHHHHHH----HHHHHHHGGGEEEEEECGGGC------
T ss_pred hcCCCCcEEEEEeeC---CCCCHHHHHHHHHHH----HHhhhhccceEEEEEeCCccCCcccHH
Confidence 344567999876644 333332333333332 23322 345899999999875544443
No 45
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.17 E-value=2.9e-10 Score=106.75 Aligned_cols=156 Identities=12% Similarity=0.011 Sum_probs=92.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+..|.. ....|+.......... ....+.++||||.... + . ....
T Consensus 6 i~v~G~~~~GKssli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-~-----~----~~~~ 70 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGIFVE-----KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF-T-----A----MRDL 70 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCCCCC-----SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSS-T-----T----HHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC-----CCCCCccceEEEEEEECCEEEEEEEEECCChHHH-H-----H----HHHH
Confidence 6899999999999999999987753 1233443333222222 2346889999996511 1 1 1223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHH-hhcCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKI-WDSVPK 157 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~i-w~~i~k 157 (772)
.+..+|++++.+...+... ..-+....+...+.......|+++|+||.|+.+...+. +...+....+ ...+.+
T Consensus 71 ~~~~~d~~i~v~d~~~~~s-----~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1c1y_A 71 YMKNGQGFALVYSITAQST-----FNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLE 145 (167)
T ss_dssp HHHHCSEEEEEEETTCHHH-----HHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEE
T ss_pred HhccCCEEEEEEECCCHHH-----HHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEE
Confidence 3567898877654433211 11111222212222233578999999999986433332 2233333232 234667
Q ss_pred CCCccCCCchhhHHHHHhhc
Q 004126 158 PQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~L 177 (772)
.|+..+.+++++|+.....+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 89999999999999876543
No 46
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.17 E-value=7e-11 Score=111.31 Aligned_cols=159 Identities=13% Similarity=0.018 Sum_probs=94.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.|.+|..... +...+|..............+.++||||..... ......+
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~~~~ 76 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDSFDPNIN--PTIGASFMTKTVQYQNELHKFLIWDTAGLERFR----------ALAPMYY 76 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCTTCC--CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG----------GGTHHHH
T ss_pred EEEECcCCCCHHHHHHHHHcCCCCCCCC--CceeEEEEEEEEEECCeEEEEEEEcCCCchhhh----------cccHhhC
Confidence 6899999999999999999998753211 122223322222222334678999999975211 1223346
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.+...+.. ...-++...+. +.-......|+++|.||+|+.+...+. +...+......-.+.+.|+
T Consensus 77 ~~~~~~i~v~d~~~~~-----s~~~~~~~~~~-l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 150 (170)
T 1z0j_A 77 RGSAAAIIVYDITKEE-----TFSTLKNWVRE-LRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSA 150 (170)
T ss_dssp TTCSEEEEEEETTCHH-----HHHHHHHHHHH-HHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred cCCCEEEEEEECcCHH-----HHHHHHHHHHH-HHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 7889987765442211 11111111111 111234678899999999986543332 2222222233234667899
Q ss_pred ccCCCchhhHHHHHhhcC
Q 004126 161 HMETPLSEFFNVEVVALS 178 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lp 178 (772)
..+.+++++|+.....++
T Consensus 151 ~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 151 KNAININELFIEISRRIP 168 (170)
T ss_dssp TTTBSHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999998877665
No 47
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.17 E-value=1.6e-10 Score=108.10 Aligned_cols=155 Identities=10% Similarity=0.014 Sum_probs=91.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|.+|+|||||+|+|.|.+|.. ....|+.......... ....+.++||||.. +. +.....
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~---~~-------~~~~~~ 71 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDEFVE-----DYEPTKADSYRKKVVLDGEEVQIDILDTAGQE---DY-------AAIRDN 71 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCS-----CCCTTCCEEEEEEEEETTEEEEEEEEECCC------C-------HHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhCccCC-----CCCCCcceEEEEEEEECCEEEEEEEEECCCcc---hh-------HHHHHH
Confidence 6899999999999999999988742 1233443333322222 22478999999954 11 122334
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++++.+...+... ..-++...+...........|+++|+||+|+.+...+. +...+.....--.+.+.
T Consensus 72 ~~~~~d~~i~v~d~~~~~s-----~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T 1u8z_A 72 YFRSGEGFLCVFSITEMES-----FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVET 146 (168)
T ss_dssp HHHHCSEEEEEEETTCHHH-----HHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred HhhcCCEEEEEEECCCHHH-----HHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEe
Confidence 4668999887665433211 11122222212222223578999999999975432222 22233333222246788
Q ss_pred CCccCCCchhhHHHHHhh
Q 004126 159 QAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~ 176 (772)
|+..+.+++++|+.....
T Consensus 147 Sa~~~~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 147 SAKTRANVDKVFFDLMRE 164 (168)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 999999999999876654
No 48
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.16 E-value=1.2e-10 Score=111.18 Aligned_cols=161 Identities=12% Similarity=-0.017 Sum_probs=93.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.+.++..... +...++..............+.++||||... -+ ......+
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~---------~~~~~~~ 82 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQE--STIGAAFFSQTLAVNDATVKFEIWDTAGQER-YH---------SLAPMYY 82 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCCCTTTSC--CCSCCSEEEEEEEETTEEEEEEEEECCCSGG-GG---------GGTHHHH
T ss_pred EEEECcCCCCHHHHHHHHHcCCCCCcCC--CCceeEEEEEEEEECCEEEEEEEEeCCCChh-hh---------hhhHHHh
Confidence 6899999999999999999988864321 1111112222111222245899999999541 11 1223446
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhch-HHHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL-EPVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l-~~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.+...+.. ...-++...+.... ......|+++|+||.|+.+...+ .+.+.+.....--.+...|+
T Consensus 83 ~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~-~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQA-----SFERAKKWVQELQA-QGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSA 156 (181)
T ss_dssp TTCSEEEEEEETTCHH-----HHHHHHHHHHHHHH-HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCS
T ss_pred ccCCEEEEEEECCCHH-----HHHHHHHHHHHHHH-hcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEEC
Confidence 7899998766442211 11111111111111 12247889999999998543332 22233333222224667899
Q ss_pred ccCCCchhhHHHHHhhcCCC
Q 004126 161 HMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lph~ 180 (772)
..+.+++++|+.....++..
T Consensus 157 ~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 157 KTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp SSCTTHHHHHHHHHHTCC--
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999988877654
No 49
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.16 E-value=1.1e-10 Score=110.13 Aligned_cols=156 Identities=14% Similarity=0.054 Sum_probs=81.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.+|+|||||+|+|.|..+...++ ...||+...+. .......+.++||||...... .....+
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 70 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVEDGPEAE---AAGHTYDRSIV-VDGEEASLMVYDIWEQDGGRW----------LPGHCM 70 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-------------CEEEEEEE-ETTEEEEEEEEECC-----------------------
T ss_pred EEEECCCCCCHHHHHHHHcCccccCCCC---ccccceEEEEE-ECCEEEEEEEEECCCCccchh----------hhhhhh
Confidence 6899999999999999999998876653 45677653332 223345788999999762211 112234
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHH-HHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL-REDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l-~~~l~~iw~~i~kpsa 160 (772)
..+|++++.....+.. ...-++.......+.......|+++|.||.|+.+...+.... .+........+.+.|+
T Consensus 71 ~~~~~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (166)
T 3q72_A 71 AMGDAYVIVYSVTDKG-----SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 145 (166)
T ss_dssp --CCEEEEEEETTCHH-----HHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBG
T ss_pred hhCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEecc
Confidence 6788887755432211 111121111111111122578999999999986544433222 2222222334677899
Q ss_pred ccCCCchhhHHHHHhh
Q 004126 161 HMETPLSEFFNVEVVA 176 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~ 176 (772)
..+.+++++|+.....
T Consensus 146 ~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 146 ALHHNVQALFEGVVRQ 161 (166)
T ss_dssp GGTBSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999877654
No 50
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.16 E-value=8.9e-11 Score=109.81 Aligned_cols=155 Identities=14% Similarity=0.047 Sum_probs=91.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+..|... ...|+........... ...+.++||||.. +. . .....
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---~~----~---~~~~~ 70 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGTFIEK-----YDPTIEDFYRKEIEVDSSPSVLEILDTAGTE---QF----A---SMRDL 70 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCSC-----CCTTCCEEEEEEEEETTEEEEEEEEECCCTT---CC----H---HHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCCccc-----CCCCcceeEEEEEEECCEEEEEEEEECCCch---hh----H---HHHHH
Confidence 78999999999999999999887532 2234433332222222 2458899999954 11 1 12233
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++++.+...+.. ...-++...+..+........|+++|+||.|+.+...+. ....+.....--.+.+.
T Consensus 71 ~~~~~~~~i~v~d~~~~~-----s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1kao_A 71 YIKNGQGFILVYSLVNQQ-----SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMET 145 (167)
T ss_dssp HHHHCSEEEEEEETTCHH-----HHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEE
T ss_pred HhccCCEEEEEEeCCCHH-----HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEe
Confidence 467789888766543321 111122222222223333578999999999975433332 22222222222245677
Q ss_pred CCccCCCchhhHHHHHhh
Q 004126 159 QAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~ 176 (772)
|+..+.+++++|+.....
T Consensus 146 Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 146 SAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHH
Confidence 899999999999876554
No 51
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.15 E-value=2.8e-10 Score=106.08 Aligned_cols=156 Identities=11% Similarity=0.000 Sum_probs=92.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|.+|+|||||+|+|.|..+... ...|+.......... ....+.++||||... . .. ....
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---~---~~----~~~~ 70 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNHFVDE-----CDPTIEDSYRKQVVIDGETCLLDILDTAGQEE---Y---SA----MRDQ 70 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSCCSC-----CCTTCCEEEEEEEEETTEEEEEEEEECCCCSS---C---CH----HHHH
T ss_pred EEEECCCCCCHHHHHHHHHhCcCccc-----cCCccceEEEEEEEECCEEEEEEEEECCCchh---h---hH----HHHH
Confidence 78999999999999999999887532 233444333222222 234678999999641 1 11 2223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 159 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kps 159 (772)
.+..+|++++.+...+.. ...-++...+.........+.|+++|+||+|..+.+...+...+..+..--.+.+.|
T Consensus 71 ~~~~~~~~i~v~d~~~~~-----~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 145 (166)
T 2ce2_X 71 YMRTGEGFLCVFAINNTK-----SFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETS 145 (166)
T ss_dssp HHHHCSEEEEEEETTCHH-----HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEEC
T ss_pred hhccCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEec
Confidence 456788887766543221 111112222211222223478999999999976533323333333322222466779
Q ss_pred CccCCCchhhHHHHHhhc
Q 004126 160 AHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~L 177 (772)
+..+.+++++|+.....+
T Consensus 146 a~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 146 AKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999998876554
No 52
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.15 E-value=3.5e-10 Score=108.71 Aligned_cols=155 Identities=12% Similarity=0.006 Sum_probs=95.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceee---EecCC-----------CCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA---RCAGI-----------EPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~---i~~~~-----------~~qil~lDteG~~s~er~e 67 (772)
|.|+|.+|+|||||+|+|.+.+|.. ...+|.|.-.. ..... ...+.++||||.. +
T Consensus 14 i~v~G~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---~-- 82 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDGKFNS------KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE---R-- 82 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCC------SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG---G--
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCc------CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH---H--
Confidence 6899999999999999999988752 23344443222 11111 2478999999973 1
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHH
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLRE 146 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~ 146 (772)
+ +......+..+|++|+.+...+... ..-++...+.........+.|+++|+||+|+.+...+. +.+.+
T Consensus 83 ----~-~~~~~~~~~~~d~~i~v~d~~~~~s-----~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 152 (195)
T 3bc1_A 83 ----F-RSLTTAFFRDAMGFLLLFDLTNEQS-----FLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARE 152 (195)
T ss_dssp ----G-HHHHHHTTTTCSEEEEEEETTCHHH-----HHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ----H-HHHHHHHHcCCCEEEEEEECCCHHH-----HHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 1 2345666789999988665433211 11111222211111122578999999999986433222 22333
Q ss_pred HHHHHhhcCCCCCCccCCCchhhHHHHHhhc
Q 004126 147 DIQKIWDSVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 147 ~l~~iw~~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
.....--.+...|+..+.+++++|+.....+
T Consensus 153 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 153 LAEKYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333322467789999999999999877654
No 53
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.15 E-value=2.2e-10 Score=109.01 Aligned_cols=155 Identities=12% Similarity=-0.021 Sum_probs=92.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.|..+.... .+.+|...........+ ..+.++||||.... +.. ...
T Consensus 12 i~v~G~~~~GKssl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~~---------~~~ 77 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADNTFSGSY----ITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF-RTI---------TST 77 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSCC---CC----TTTBSEEEEEEEEEETTEEEEEEEEEETTGGGC-SSC---------CGG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCcc----CCCceeEEEEEEEEECCEEEEEEEEcCCCchhh-hhh---------HHH
Confidence 689999999999999999999887432 33344444433333333 57899999995422 111 122
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHH-HHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLK-TVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPK 157 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLk-tv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~k 157 (772)
.+..+|++|+.+...+.. ...-++ .+.++. . .....|+++|+||+|+.+...+. ....+........+..
T Consensus 78 ~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~-~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 149 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAE-----SFVNVKRWLHEIN-Q--NCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFE 149 (181)
T ss_dssp GGTTCSEEEEEEETTCHH-----HHHHHHHHHHHHH-H--HCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEE
T ss_pred HhccCCEEEEEEECCCHH-----HHHHHHHHHHHHH-H--hCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEE
Confidence 357889998766543311 111111 111111 1 11468999999999976544333 2222222233335677
Q ss_pred CCCccCCCchhhHHHHHhhcC
Q 004126 158 PQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~Lp 178 (772)
.|+..+.+++++|+.....+.
T Consensus 150 ~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 150 TSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 899999999999998766543
No 54
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.15 E-value=1.1e-10 Score=109.80 Aligned_cols=159 Identities=10% Similarity=-0.012 Sum_probs=92.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.+.++..... +...++..............+.++||||... . +......+
T Consensus 9 i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~---~-------~~~~~~~~ 76 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKGQFHEFQE--STIGAAFLTQTVCLDDTTVKFEIWDTAGQER---Y-------HSLAPMYY 76 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEEETTEEEEEEEEEECCSGG---G-------GGGHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceEEEEEEEEECCEEEEEEEEeCCCcHH---h-------hhhhHHhc
Confidence 6899999999999999999988764221 1111222222222222345789999999541 1 11234456
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.+...+.. ...-++...+...+ ......|+++|.||+|+.+...+. +...+.....--.+.+.|+
T Consensus 77 ~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~-~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (170)
T 1r2q_A 77 RGAQAAIVVYDITNEE-----SFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSA 150 (170)
T ss_dssp TTCSEEEEEEETTCHH-----HHHHHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred cCCCEEEEEEECCCHH-----HHHHHHHHHHHHHH-hcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeC
Confidence 7899998766442211 11111111111111 122568899999999975433222 2222222222224567899
Q ss_pred ccCCCchhhHHHHHhhcC
Q 004126 161 HMETPLSEFFNVEVVALS 178 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lp 178 (772)
..+.+++++|+.....++
T Consensus 151 ~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 151 KTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TTCTTHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999887765
No 55
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.14 E-value=2e-10 Score=120.06 Aligned_cols=174 Identities=14% Similarity=0.019 Sum_probs=84.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCC--CCCCCCcccceee--EecCCC--CcEEEEecCCCCCcCCCCC-ccH---
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAF--KGRSQTTKGIWMA--RCAGIE--PCTLIMDLEGTDGRERGED-DTA--- 71 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~--~~r~QTTrGiw~~--i~~~~~--~qil~lDteG~~s~er~e~-~~~--- 71 (772)
|+|+|.+|+|||||+|+|||++..+.+.. ..+..+|-++-.. ...... ..+.++||||+........ ...
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~ 90 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVID 90 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHH
Confidence 78999999999999999999988765420 0011233332222 222222 2899999999853221111 011
Q ss_pred HHHHHHHHHhh-------------cccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh
Q 004126 72 FEKQSALFALA-------------VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 138 (772)
Q Consensus 72 fe~k~alfALa-------------~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e 138 (772)
|....-...+. .+|++++.+....-+... ....+++.+ . .+.|+++|+||+|..+.+
T Consensus 91 ~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~-~d~~~l~~l--------~-~~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 91 YIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKP-LDIEFMKRL--------H-EKVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCH-HHHHHHHHH--------T-TTSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCH-HHHHHHHHH--------h-ccCCEEEEEeccCCCCHH
Confidence 11111011122 266777666432212111 112222222 1 278999999999976655
Q ss_pred chHH---HHHHHHHHHhhcCCCCCCccCCCchhhHHHHHhhcCCCccchh
Q 004126 139 NLEP---VLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEE 185 (772)
Q Consensus 139 ~l~~---~l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~~~Lph~~~~~~ 185 (772)
.+.. .+.+.+..---.+.+.++..+.++.++++.....+|......+
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~~vv~s~ 210 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSN 210 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSEECCCCC
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCcEEEEee
Confidence 5443 3344443221236778899999999999999999988766533
No 56
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.14 E-value=2.2e-10 Score=108.94 Aligned_cols=156 Identities=13% Similarity=0.040 Sum_probs=95.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|+|..|.. ....||...+........ ..+.++||||.... +. . ...
T Consensus 12 i~v~G~~~~GKssli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-~~-~--------~~~ 76 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQSYFVS-----DYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF-GA-M--------REQ 76 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHSSCCS-----SCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTT-SC-C--------HHH
T ss_pred EEEECCCCCCHHHHHHHHHhCcCcc-----ccCCCcCceEEEEEEECCEEEEEEEEECCCchhh-HH-H--------HHH
Confidence 6899999999999999999987642 345666665554444332 47889999996521 11 1 122
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+.. ...-++...+..++.......|+++|+||.|+.+...+. ....+.....--.+...
T Consensus 77 ~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 151 (181)
T 2fn4_A 77 YMRAGHGFLLVFAINDRQ-----SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEA 151 (181)
T ss_dssp HHHHCSEEEEEEETTCHH-----HHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHhhCCEEEEEEeCCCHH-----HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEe
Confidence 346789887765443211 111122222222233334678999999999976543332 22222222222246678
Q ss_pred CCccCCCchhhHHHHHhhc
Q 004126 159 QAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~L 177 (772)
|+..+.+++++|+.....+
T Consensus 152 Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 152 SAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999876554
No 57
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.14 E-value=5.7e-12 Score=139.60 Aligned_cols=87 Identities=14% Similarity=-0.041 Sum_probs=46.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC---------------------C---CCcEEEEec
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG---------------------I---EPCTLIMDL 57 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~---------------------~---~~qil~lDt 57 (772)
|+|||+||+|||||+|+|.|.+ +.++ +.++||+....|+... . ..++.|+||
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~-~~~~---~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD-VEIA---NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC-Cccc---CCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 7899999999999999999998 4444 5899999988886421 1 247999999
Q ss_pred CCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeecccc
Q 004126 58 EGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHD 95 (772)
Q Consensus 58 eG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~d 95 (772)
||+..... + ..-+....+.++..+|++++.+.+.+
T Consensus 79 pG~~~~a~-~--~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 79 AGLVPGAH-E--GRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp C------------------CCCSSTTCSEEEEEEETTC
T ss_pred CCcccchh-h--hhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 99963110 0 11111222345789999998887643
No 58
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.14 E-value=1.2e-10 Score=110.14 Aligned_cols=158 Identities=13% Similarity=0.038 Sum_probs=84.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|||||||+|+|.|..+..... +.+|.......... ...++.++||||...... . ....
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~---~~~~ 71 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQGDHAHE----MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG------W---LQDH 71 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC----------------CEEEEEEEETTEEEEEEEECCCCC-----------------CH
T ss_pred EEEECCCCCCHHHHHHHHHhccCccccc----CCCcCCeeeEEEEECCeEEEEEEEECCCccccch------h---hhhh
Confidence 6899999999999999999988876542 22333333322222 235788999999862221 1 1112
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++++.....+.. ...-++.......+.....+.|+++|+||.|+.+...+. +...+.....-..+.+.
T Consensus 72 ~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (169)
T 3q85_A 72 CLQTGDAFLIVFSVTDRR-----SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIET 146 (169)
T ss_dssp HHHHCSEEEEEEETTCHH-----HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhccCCEEEEEEECCChH-----HHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEe
Confidence 344688887755443211 111111111111111122478999999999976433332 22222222332356788
Q ss_pred CCccCCCchhhHHHHHhhc
Q 004126 159 QAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~L 177 (772)
|+..+.+++++|+.....+
T Consensus 147 Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 147 SAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred cCccCCCHHHHHHHHHHHH
Confidence 9999999999999876543
No 59
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.14 E-value=3.9e-10 Score=110.22 Aligned_cols=157 Identities=10% Similarity=0.014 Sum_probs=95.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|||||||+|+|.|..|.. ....||...........+ ..+.++||||.. +. . .....
T Consensus 17 i~v~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~---~~---~----~~~~~ 81 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYDEFVE-----DYEPTKADSYRKKVVLDGEEVQIDILDTAGQE---DY---A----AIRDN 81 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCT-----TCCTTCCEEEEEEEEETTEEEEEEEEECCCTT---CC---H----HHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC-----CCCCccceEEEEEEEECCEEEEEEEEcCCChh---hh---H----HHHHH
Confidence 6899999999999999999988742 233444444333332222 478999999964 11 1 12334
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+.. ...-+....+...........|+++|+||.|+.+...+. +.+.+.....--.+...
T Consensus 82 ~~~~~~~~i~v~d~~~~~-----s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (206)
T 2bov_A 82 YFRSGEGFLCVFSITEME-----SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVET 156 (206)
T ss_dssp HHHHCSEEEEEEETTCHH-----HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred HHhhCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEE
Confidence 466789888765443321 111122222222222233578999999999986433222 22333333332246778
Q ss_pred CCccCCCchhhHHHHHhhcC
Q 004126 159 QAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lp 178 (772)
|+..+.+++++|+.....+.
T Consensus 157 Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 157 SAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998876654
No 60
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.14 E-value=3.5e-10 Score=109.56 Aligned_cols=156 Identities=11% Similarity=-0.013 Sum_probs=90.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|.+|||||||+|+|.|..|.. ....||...+....... ...+.++||||..... .....
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~ 88 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNHFVD-----EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----------AMRDQ 88 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSCCS-----CCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred EEEECcCCCCHHHHHHHHHcCCCcc-----ccCCccceEEEEEEEECCEEEEEEEEECCChHHHH----------HHHHH
Confidence 6899999999999999999988753 22345544443333222 2458899999964111 12234
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 159 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kps 159 (772)
.+..+|++++.+...+.. ...-++...+...........|+++|+||+|+.+.+...+.+.+..+..--.+...|
T Consensus 89 ~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 163 (190)
T 3con_A 89 YMRTGEGFLCVFAINNSK-----SFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETS 163 (190)
T ss_dssp -CTTCSEEEEEEETTCHH-----HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECC
T ss_pred hhCcCCEEEEEEECcCHH-----HHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEe
Confidence 567899998766543321 111122222211122222478999999999976533222233333333322467789
Q ss_pred CccCCCchhhHHHHHhhc
Q 004126 160 AHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~L 177 (772)
+..+.+++++|+.....+
T Consensus 164 a~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 164 AKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999998876654
No 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.14 E-value=3.4e-10 Score=108.22 Aligned_cols=156 Identities=10% Similarity=0.019 Sum_probs=94.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+.+|.. ....||...+....... ...+.++||||.. +. +.....
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~---~~-------~~~~~~ 85 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDEFVE-----DYEPTKADSYRKKVVLDGEEVQIDILDTAGQE---DY-------AAIRDN 85 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCC-----SCCTTCCEEEEEEEEETTEEEEEEEEECCCTT---CC-------HHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCC-----cCCCccceEEEEEEEECCEEEEEEEEECCCCc---cc-------HHHHHH
Confidence 6899999999999999999988743 22334444443322222 2478999999954 11 123334
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+... ..-++...+...........|+++|+||+|+.+...+. ..+.+..+..--.+...
T Consensus 86 ~~~~~d~~i~v~d~~~~~s-----~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (187)
T 2a9k_A 86 YFRSGEGFLCVFSITEMES-----FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVET 160 (187)
T ss_dssp HHHHCSEEEEEEETTCHHH-----HHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HhccCCEEEEEEECcCHHH-----HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEe
Confidence 5678999987665433221 11111222212222233578999999999975432222 22233333322246778
Q ss_pred CCccCCCchhhHHHHHhhc
Q 004126 159 QAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~L 177 (772)
|+..+.+++++|+.....+
T Consensus 161 Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 161 SAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 9999999999999876654
No 62
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.13 E-value=5e-11 Score=116.49 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=96.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|+|..|.... .+...+|..............+.++||||... -+ ......+
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~---------~~~~~~~ 93 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDHFDHNI--SPTIGASFMTKTVPCGNELHKFLIWDTAGQER-FH---------SLAPMYY 93 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCCCCTTC--CCCSSEEEEEEEEECSSSEEEEEEEEECCSGG-GG---------GGTHHHH
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCc--CCCcceeEEEEEEEeCCEEEEEEEEcCCCchh-hH---------hhhHHhh
Confidence 789999999999999999998875211 12333444333333333446899999999541 11 1223446
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.+...+.. ...-++...+. +.-......|+++|+||+|+.+...+. +.+.+....+-..+...|+
T Consensus 94 ~~~d~iilV~d~~~~~-----s~~~~~~~~~~-i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 167 (192)
T 2fg5_A 94 RGSAAAVIVYDITKQD-----SFYTLKKWVKE-LKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSA 167 (192)
T ss_dssp TTCSEEEEEEETTCTH-----HHHHHHHHHHH-HHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBT
T ss_pred ccCCEEEEEEeCCCHH-----HHHHHHHHHHH-HHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 7899998766543321 11111111111 111123578999999999975433222 2233333223224667899
Q ss_pred ccCCCchhhHHHHHhhcCC
Q 004126 161 HMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lph 179 (772)
..+.+++++|+.....++.
T Consensus 168 ~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 168 KNAINIEELFQGISRQIPP 186 (192)
T ss_dssp TTTBSHHHHHHHHHHTCC-
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 9999999999998887764
No 63
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.13 E-value=3.1e-10 Score=107.76 Aligned_cols=158 Identities=12% Similarity=0.026 Sum_probs=92.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.+.+|..... +...++.....-........+.++||||.. +. +......+
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---~~-------~~~~~~~~ 85 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIEVSGQKIKLQIWDTAGQE---RF-------RAVTRSYY 85 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCSSCT--TSCCCCEEEEEEEETTEEEEEEEEECTTGG---GT-------CHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceEEEEEEEEECCeEEEEEEEECCCCh---Hh-------hhhHHHHh
Confidence 6899999999999999999988853211 111112222222222233578999999953 11 12344557
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.+...+.. ...-++...+. +......+.|+++|+||+|+.+...+. +.+.+......-.+...|+
T Consensus 86 ~~~d~~i~v~d~~~~~-----s~~~~~~~~~~-~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (179)
T 1z0f_A 86 RGAAGALMVYDITRRS-----TYNHLSSWLTD-ARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASA 159 (179)
T ss_dssp HTCSEEEEEEETTCHH-----HHHTHHHHHHH-HHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred ccCCEEEEEEeCcCHH-----HHHHHHHHHHH-HHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 7899998866543221 11111111111 111223578999999999985433222 2233333332224667899
Q ss_pred ccCCCchhhHHHHHhhc
Q 004126 161 HMETPLSEFFNVEVVAL 177 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~L 177 (772)
..+.+++++|+.....+
T Consensus 160 ~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 160 KTGENVEDAFLEAAKKI 176 (179)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998766543
No 64
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.12 E-value=3.7e-10 Score=106.12 Aligned_cols=154 Identities=12% Similarity=0.028 Sum_probs=96.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.+|+|||||+|+|.+..|.- ...|.|............+.++||||... + +......+
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~~~~-------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~---------~-~~~~~~~~ 65 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGEIVT-------TIPTIGFNVETVEYKNISFTVWDVGGQDK---------I-RPLWRHYF 65 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSC-------CCCCSSCCEEEEECSSCEEEEEECCCCGG---------G-HHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHcCCcCc-------ccCcCceeEEEEEECCEEEEEEEcCCChh---------h-HHHHHHHh
Confidence 7899999999999999999987752 12366655555555678999999999741 1 22344567
Q ss_pred hcccEEEEeeccccccccccCCHHHH-HHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh-----cC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLL-KTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD-----SV 155 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lL-ktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~-----~i 155 (772)
..+|++|+.+...+.. ...-+ +.+.+ .+......+.|+++|.||.|+.+....+ .+.+.+..-+. .+
T Consensus 66 ~~~d~~i~v~d~~~~~-----s~~~~~~~~~~-~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~ 138 (164)
T 1r8s_A 66 QNTQGLIFVVDSNDRE-----RVNEAREELMR-MLAEDELRDAVLLVFANKQDLPNAMNAA-EITDKLGLHSLRHRNWYI 138 (164)
T ss_dssp TTCSEEEEEEETTCGG-----GHHHHHHHHHH-HHTCGGGTTCEEEEEEECTTSTTCCCHH-HHHHHTTGGGCSSCCEEE
T ss_pred ccCCEEEEEEECCCHH-----HHHHHHHHHHH-HHhchhhcCCeEEEEEECcCCcCCCCHH-HHHHHhCcccccCccEEE
Confidence 8999998766543321 11111 11111 1111112478999999999986543222 22222211110 25
Q ss_pred CCCCCccCCCchhhHHHHHhhcCC
Q 004126 156 PKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
...|+..+.+++++|+.....++.
T Consensus 139 ~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 139 QATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp EECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEcccCCCcCHHHHHHHHHHHHhh
Confidence 578999999999999988877654
No 65
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=2.4e-10 Score=109.12 Aligned_cols=158 Identities=9% Similarity=-0.049 Sum_probs=92.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+.+|.... ..+.++........... ...+.++||||.... +.....
T Consensus 13 i~v~G~~~~GKssli~~l~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~~~ 79 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGAFLAGT---FISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERF----------RSVTHA 79 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCCCC---CCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------C
T ss_pred EEEECcCCCCHHHHHHHHHhCCCCCCC---cCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHH----------HHHHHH
Confidence 689999999999999999999886422 12333333333332222 247899999995411 122344
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+.. ...-++...+.... ......|+++|+||+|+.+...+. +...+..+...-.+...
T Consensus 80 ~~~~~d~ii~v~d~~~~~-----s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKA-----SFDNIQAWLTEIHE-YAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMET 153 (180)
T ss_dssp CGGGCSEEEEEEETTCHH-----HHHTHHHHHHHHHH-HSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HccCCCEEEEEEECCCHH-----HHHHHHHHHHHHHH-hCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEE
Confidence 567899998866543211 11111111111111 122578999999999986543322 22222222222246678
Q ss_pred CCccCCCchhhHHHHHhhcC
Q 004126 159 QAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lp 178 (772)
|+..+.+++++|+.....+.
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 154 SAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998776554
No 66
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.12 E-value=9.4e-11 Score=127.46 Aligned_cols=165 Identities=14% Similarity=0.043 Sum_probs=106.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC-CcEEEEecCCCCC-cCCCC-CccHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE-PCTLIMDLEGTDG-RERGE-DDTAFEKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~-~qil~lDteG~~s-~er~e-~~~~fe~k~al 78 (772)
|+|||.||+|||||||+|.+.++.+- ..+.||...-.+.....+ ..+.++||||+.. ..++. ....| +
T Consensus 161 V~lvG~~nvGKSTLln~L~~~~~~i~----~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~f-----l 231 (342)
T 1lnz_A 161 VGLVGFPSVGKSTLLSVVSSAKPKIA----DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQF-----L 231 (342)
T ss_dssp EEEESSTTSSHHHHHHHSEEECCEES----STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHH-----H
T ss_pred eeeeCCCCCCHHHHHHHHHcCCCccc----cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHH-----H
Confidence 78999999999999999999988763 357899988888877665 7899999999742 11111 11233 3
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC--CCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCC
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 156 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~--~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~ 156 (772)
..+..+|++|+.+...+... .....-++.+.+ .+..+.+ ...|+++|+||+|+.+.+...+.+.+.+... ..+.
T Consensus 232 ~~i~~~d~ll~VvD~s~~~~--~~~~~~~~~~~~-eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~-~~v~ 307 (342)
T 1lnz_A 232 RHIERTRVIVHVIDMSGLEG--RDPYDDYLTINQ-ELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDD-YPVF 307 (342)
T ss_dssp HHHHHCCEEEEEEESSCSSC--CCHHHHHHHHHH-HHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSC-CCBC
T ss_pred HHHHhccEEEEEEECCcccc--cChHHHHHHHHH-HHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcC-CCEE
Confidence 44677999988776543210 011111222222 1233332 4788999999999865432111222211100 2577
Q ss_pred CCCCccCCCchhhHHHHHhhcCC
Q 004126 157 KPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
+.|+..+.+++++|+.+...+..
T Consensus 308 ~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 308 PISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp CCSSCCSSTTHHHHHHHHHHHTS
T ss_pred EEECCCCcCHHHHHHHHHHHHhh
Confidence 89999999999999988776653
No 67
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.12 E-value=4e-10 Score=109.71 Aligned_cols=153 Identities=11% Similarity=0.046 Sum_probs=95.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.+.+|.. ....|-|.-..........+.++||||.. .| +......+
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~---------~~-~~~~~~~~ 88 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQFNE------DMIPTVGFNMRKITKGNVTIKLWDIGGQP---------RF-RSMWERYC 88 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCC------SCCCCCSEEEEEEEETTEEEEEEEECCSH---------HH-HTTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC------ccCCCCceeEEEEEeCCEEEEEEECCCCH---------hH-HHHHHHHH
Confidence 6899999999999999999988862 12234444334444556789999999964 11 12233446
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC---CCCccEEEEEeCCCCCChhchHHHHHHHHHHHh-----h
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS---PRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-----D 153 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~---~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-----~ 153 (772)
..+|++|+.+...+.. . +..+.+....+.. ..+.|+++|+||+|+.+....+ .+.+.+...+ -
T Consensus 89 ~~~d~ii~v~D~~~~~-----s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 159 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQE-----K---IEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEK-ELIEKMNLSAIQDREI 159 (188)
T ss_dssp TTCSEEEEEEETTCGG-----G---HHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHH-HHHHHTTGGGCCSSCE
T ss_pred ccCCEEEEEEECCCHH-----H---HHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHH-HHHHHhChhhhccCCe
Confidence 7899998866543321 1 1111111112222 2578999999999986432222 2222221111 1
Q ss_pred cCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
.+...|+..+.+++++|+.....+..
T Consensus 160 ~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 160 CCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 24578999999999999988877654
No 68
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=1e-10 Score=113.12 Aligned_cols=160 Identities=14% Similarity=-0.049 Sum_probs=93.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.+..|..... +...++..............+.++||||... -+. .....+
T Consensus 18 i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~---------~~~~~~ 85 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTDDTFDPELA--ATIGVDFKVKTISVDGNKAKLAIWDTAGQER-FRT---------LTPSYY 85 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCTTCC--CCCSEEEEEEEEEETTEEEEEEEEEECSSGG-GCC---------SHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCccCC--CccceEEEEEEEEECCeEEEEEEEeCCCchh-hhh---------hhHHHh
Confidence 7899999999999999999998863221 1111222222112222345789999999641 111 123446
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCCc
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 161 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa~ 161 (772)
..+|++|+.+...+.. ...-++...+...........|+++|+||.|+.+.+...+...+......-.+...|+.
T Consensus 86 ~~~d~ii~v~d~~~~~-----s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (195)
T 1x3s_A 86 RGAQGVILVYDVTRRD-----TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAK 160 (195)
T ss_dssp TTCCEEEEEEETTCHH-----HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred ccCCEEEEEEECcCHH-----HHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCC
Confidence 7899998766442211 11112222221111112257899999999998543322222333333332246678999
Q ss_pred cCCCchhhHHHHHhhcC
Q 004126 162 METPLSEFFNVEVVALS 178 (772)
Q Consensus 162 ~~~~l~dlf~~~~~~Lp 178 (772)
.+.+++++|+.....++
T Consensus 161 ~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKII 177 (195)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998776654
No 69
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.11 E-value=2.9e-10 Score=108.22 Aligned_cols=161 Identities=13% Similarity=-0.015 Sum_probs=92.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+.+|.... .+.++........... ...+.++||||.. .+ +.....
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~-~~~~~~ 75 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNKFDTQL----FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE---------RF-RSLRTP 75 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCC--------CCSEEEEEEEEEETTEEEEEEEEECCCCG---------GG-HHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCC----CCceeeeEEEEEEEECCEEEEEEEEeCCCch---------hh-hhhHHH
Confidence 689999999999999999998886321 1222222222222222 2478999999953 11 123344
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHh-hcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-~~i~kp 158 (772)
.+..+|++|+.+...+...... -...++.+... .........|+++|+||.|+.+.+...+.+.+...... ..+.+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~-~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
T 1wms_A 76 FYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYY-ADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFET 153 (177)
T ss_dssp GGTTCSEEEEEEETTCHHHHHT-HHHHHHHHHHH-HTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEEC
T ss_pred HHhcCCEEEEEEECcCHHHHHH-HHHHHHHHHHH-ccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEE
Confidence 5678999887664432211000 01112222211 11111256899999999998633322233333332121 246678
Q ss_pred CCccCCCchhhHHHHHhhcC
Q 004126 159 QAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lp 178 (772)
|+..+.+++++|+.....+.
T Consensus 154 Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 154 SAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998776553
No 70
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.11 E-value=1.2e-10 Score=114.70 Aligned_cols=156 Identities=11% Similarity=-0.019 Sum_probs=91.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|+|.+|..-. .+.+|...........+ ..+.++||||.... +. ....
T Consensus 23 i~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~---------~~~~ 88 (213)
T 3cph_A 23 ILLIGDSGVGKSCLLVRFVEDKFNPSF----ITTIGIDFKIKTVDINGKKVKLQLWDTAGQERF-RT---------ITTA 88 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHCCCCCSS----SCCCSCCEEEEEEEETTEEEEEEEECCTTGGGG-TC---------CCHH
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccc----CCcccceEEEEEEEECCEEEEEEEEeCCCcHHH-HH---------HHHH
Confidence 789999999999999999999885321 22233333322222222 57899999996521 11 1234
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 159 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kps 159 (772)
.+..+|++|+.+...+.. ...-++...+.... ......|+++|+||+|+.+.+.......+.....--.+.+.|
T Consensus 89 ~~~~~d~ii~v~d~~~~~-----s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 162 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDER-----TFTNIKQWFKTVNE-HANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESS 162 (213)
T ss_dssp HHTTCSEEEEEEETTCHH-----HHHTHHHHHHHHHH-HTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECB
T ss_pred HhccCCEEEEEEECCCHH-----HHHHHHHHHHHHHH-hcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEe
Confidence 457899998766543221 11111111111111 122468999999999984332222222222222222467789
Q ss_pred CccCCCchhhHHHHHhhc
Q 004126 160 AHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~L 177 (772)
+..+.+++++|+.....+
T Consensus 163 a~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 163 AKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp TTTTBSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999998766544
No 71
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.11 E-value=1.4e-10 Score=110.07 Aligned_cols=158 Identities=9% Similarity=0.029 Sum_probs=94.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+.+|.... .+.+|...........+ ..+.++||||.... +. ....
T Consensus 17 i~v~G~~~~GKssli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-~~---------~~~~ 82 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYDSFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RS---------LIPS 82 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCSSC----CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-GG---------GSHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCC----CCceeeEEEEEEEEECCeEEEEEEEECCCcHHH-HH---------HHHH
Confidence 689999999999999999998886422 23333333333332222 47899999995411 11 1223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+..... .-...+..+.+ ....+.|+++|+||+|+.+...+. ....+......-.+...
T Consensus 83 ~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~-----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (179)
T 2y8e_A 83 YIRDSTVAVVVYDITNTNSFH-QTSKWIDDVRT-----ERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 156 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHH-THHHHHHHHHH-----HHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred HhcCCCEEEEEEECCCHHHHH-HHHHHHHHHHH-----hcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEE
Confidence 456899998766543211000 00111122211 112578999999999975433332 22222232332346678
Q ss_pred CCccCCCchhhHHHHHhhcCC
Q 004126 159 QAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lph 179 (772)
|+..+.+++++|+.....++.
T Consensus 157 Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 157 SAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp BTTTTBSHHHHHHHHHHTCC-
T ss_pred eCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999998887764
No 72
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.10 E-value=1.1e-10 Score=110.03 Aligned_cols=157 Identities=11% Similarity=-0.015 Sum_probs=90.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.|.+|.... .+.+|........... ...+.++||||... -+. ....
T Consensus 6 i~v~G~~~~GKssli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~---------~~~~ 71 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDKFNPSF----ITTIGIDFKIKTVDINGKKVKLQIWDTAGQER-FRT---------ITTA 71 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCCCCC-----------CCEEEEEEESSSCEEEEEEECCTTGGG-TSC---------CCHH
T ss_pred EEEECcCCCCHHHHHHHHHhCCCCCCC----CCccceeEEEEEEEECCEEEEEEEEeCCCChh-hhh---------hHHH
Confidence 689999999999999999999886321 2222322322222222 34789999999642 111 1233
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 159 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kps 159 (772)
.+..+|++|+.+...+.. ...-++...+...+ ......|+++|+||+|+.+.+...+...+......-.+.+.|
T Consensus 72 ~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 145 (170)
T 1g16_A 72 YYRGAMGIILVYDITDER-----TFTNIKQWFKTVNE-HANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESS 145 (170)
T ss_dssp HHTTEEEEEEEEETTCHH-----HHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECB
T ss_pred HhccCCEEEEEEECCCHH-----HHHHHHHHHHHHHH-hcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEE
Confidence 457899987766443211 11111111111111 122478999999999984322222222333333322467789
Q ss_pred CccCCCchhhHHHHHhhcC
Q 004126 160 AHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~Lp 178 (772)
+..+.+++++|+.....++
T Consensus 146 a~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 146 AKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998776554
No 73
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.10 E-value=3.1e-10 Score=108.85 Aligned_cols=157 Identities=11% Similarity=0.038 Sum_probs=92.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+.+|.. ....||............ ..+.++||||.+.- +... ..
T Consensus 9 i~~~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~~-~~-------- 73 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFVEGQFVD-----SYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY-SIFP-QT-------- 73 (181)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSCCS-----CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTT-CCCC-GG--------
T ss_pred EEEECcCCCCHHHHHHHHHcCCCCC-----CCCCCccccEEEEEEECCEEEEEEEEeCCCchhh-hHHH-HH--------
Confidence 7899999999999999999777642 234455544433333333 46789999997632 2111 22
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.....+.. ...-++...+..++.......|+++|+||+|+.+...+. +...+.....-..+.+.
T Consensus 74 ~~~~~~~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIK-----SFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLES 148 (181)
T ss_dssp GTTTCSEEEEEEETTCHH-----HHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHhcCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEE
Confidence 245789988766543221 111122222222233334578999999999975433332 23333333332346778
Q ss_pred CCccCCCchhhHHHHHhhcC
Q 004126 159 QAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lp 178 (772)
|+..+.+++++|+.....+.
T Consensus 149 Sa~~~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 149 SAKENQTAVDVFRRIILEAE 168 (181)
T ss_dssp CTTSHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHH
Confidence 99999999999988766553
No 74
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.10 E-value=2.8e-10 Score=135.00 Aligned_cols=160 Identities=14% Similarity=0.096 Sum_probs=97.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccc-----------e-----------------------------
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-----------W----------------------------- 41 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGi-----------w----------------------------- 41 (772)
|+|+|.||+|||||||+|+|..|--. +.+-|||-. |
T Consensus 54 I~vvG~~saGKSSllnaL~g~~~LP~----g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 54 IAVVGGQSAGKSSVLENFVGRDFLPR----GSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp EEEEECTTTCHHHHHHHHHSSCCSCC----SSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhCCCccCc----CCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 78999999999999999999887321 122344311 1
Q ss_pred ------------eeEecCCCCcEEEEecCCCCCcCCCCCc----cHHHHHHHHHHhhcccEEEEeeccc-cccccccCCH
Q 004126 42 ------------MARCAGIEPCTLIMDLEGTDGRERGEDD----TAFEKQSALFALAVSDIVLINMWCH-DIGREQAANK 104 (772)
Q Consensus 42 ------------~~i~~~~~~qil~lDteG~~s~er~e~~----~~fe~k~alfALa~sDvliiNl~~~-dig~~~~~n~ 104 (772)
+-+......+++|+||||++....+... ..+......+....+|++++.+... +++ ..+..
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~--~~d~l 207 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA--NSDAL 207 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS--SCHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc--hhHHH
Confidence 1111123458999999999964432110 1222223334446899998877653 222 11111
Q ss_pred HHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHH---HHhhcCCCCCCccCCCchhhHHHHHh
Q 004126 105 PLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQ---KIWDSVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 105 ~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~---~iw~~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
.+++.+.+ ...|+++|+||+|..+.+... ..+..... .-|..+.+.|+.++.+++++++.+..
T Consensus 208 ~ll~~L~~--------~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 208 KIAKEVDP--------QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHCT--------TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHHh--------cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 24444433 578999999999987554332 22211110 01667999999999999999987654
No 75
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.10 E-value=3.2e-10 Score=109.13 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=89.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCC-ccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGED-DTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~-~~~fe~k~alfA 80 (772)
|.|+|.+|+|||||+|+|.|.+|..- ..+.+|+........ .+.++||||......-.. .++..+......
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~~~~~----~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKKVRRG----KRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCCCSSS----SSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCcCCccC----CCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999988642 245667665544332 889999999753221100 011112222222
Q ss_pred ----hhcccEEEEeeccccccccccC------------CHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh-chHHH
Q 004126 81 ----LAVSDIVLINMWCHDIGREQAA------------NKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPV 143 (772)
Q Consensus 81 ----La~sDvliiNl~~~dig~~~~~------------n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e-~l~~~ 143 (772)
...+++++. ..|....... ...+++.+.. ...|+++|+||+|..+.. ...+.
T Consensus 76 ~~~~~~~~~~v~~---v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~piilv~nK~Dl~~~~~~~~~~ 144 (190)
T 2cxx_A 76 IEDNAKNIDVAVL---VVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--------LDIPTIVAVNKLDKIKNVQEVINF 144 (190)
T ss_dssp HHHHGGGCCEEEE---EEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--------TTCCEEEEEECGGGCSCHHHHHHH
T ss_pred HHhhhccCCEEEE---EEcchhhhhHHHhhhccCccHHHHHHHHHHHh--------cCCceEEEeehHhccCcHHHHHHH
Confidence 333455543 3332211100 0001111111 578999999999976543 11122
Q ss_pred HHHHHHHHh----hcCCCCCCccCCCchhhHHHHHhhcC
Q 004126 144 LREDIQKIW----DSVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 144 l~~~l~~iw----~~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
+.+.+..-+ ..+.+.|+..+.+++++|+.....++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 145 LAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp HHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 222221101 13567899999999999998776554
No 76
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.09 E-value=3.4e-10 Score=110.06 Aligned_cols=158 Identities=10% Similarity=-0.017 Sum_probs=91.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.|..|..... +...++.............++.++||||.... +. .....+
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~---------~~~~~~ 95 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNEFSHDSR--TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERY-RA---------ITSAYY 95 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSCCCSSCC--CCSSEEEEEEEEEETTEEEEEEEEEESCCCTT-CT---------THHHHH
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEeCCCchhh-hh---------hhHHHh
Confidence 6899999999999999999998875331 11111111111112223467899999998521 11 223446
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.+...+.. ...-+...++.... ......|+++|+||+|+.+...+. ....+......-.+...|+
T Consensus 96 ~~~d~vi~v~D~~~~~-----s~~~~~~~l~~i~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 169 (193)
T 2oil_A 96 RGAVGALLVFDLTKHQ-----TYAVVERWLKELYD-HAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSA 169 (193)
T ss_dssp TTCCEEEEEEETTCHH-----HHHTHHHHHHHHHT-TSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECT
T ss_pred ccCCEEEEEEECCCHH-----HHHHHHHHHHHHHH-hcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 7899887765432211 11111111111111 122578999999999975433222 2222222222224667899
Q ss_pred ccCCCchhhHHHHHhhc
Q 004126 161 HMETPLSEFFNVEVVAL 177 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~L 177 (772)
..+.+++++|+.....+
T Consensus 170 ~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 170 LDSTNVELAFETVLKEI 186 (193)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998776544
No 77
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.09 E-value=4.2e-10 Score=109.30 Aligned_cols=159 Identities=9% Similarity=-0.013 Sum_probs=90.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|++..|.... .+..+.......... ....+.++||||.. .|.......
T Consensus 23 i~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~ 89 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAGRFPDRT----EATIGVDFRERAVDIDGERIKIQLWDTAGQE---------RFRKSMVQH 89 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSCCSSC----CCCCSCCEEEEEEEETTEEEEEEEEECCCSH---------HHHTTTHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCC----CCCcceEEEEEEEEECCEEEEEEEEECCCch---------hhhhhhhHH
Confidence 689999999999999999998886422 111111122222222 23578999999953 222123344
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+.. ...-++...+...+.......|+++|+||+|+.+...+. +...+.....--.+...
T Consensus 90 ~~~~~d~iilv~D~~~~~-----s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 164 (189)
T 1z06_A 90 YYRNVHAVVFVYDMTNMA-----SFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFET 164 (189)
T ss_dssp HHTTCCEEEEEEETTCHH-----HHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEC
T ss_pred HhcCCCEEEEEEECcCHH-----HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEE
Confidence 567899998866543211 011111122222222334678999999999985443332 22222222222245678
Q ss_pred CCccC---CCchhhHHHHHhhcC
Q 004126 159 QAHME---TPLSEFFNVEVVALS 178 (772)
Q Consensus 159 sa~~~---~~l~dlf~~~~~~Lp 178 (772)
|+..+ .++.++|+.....++
T Consensus 165 Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 165 SAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp CSSSGGGGSCHHHHHHHHC----
T ss_pred eCCcCCcccCHHHHHHHHHHHHh
Confidence 89988 899999988766554
No 78
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.09 E-value=3.1e-10 Score=111.67 Aligned_cols=157 Identities=11% Similarity=0.090 Sum_probs=95.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.|.+|.. ....|+...+...... ....+.++||||.... +.. ...
T Consensus 27 i~vvG~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~---------~~~ 91 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVEGEFSE-----GYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY-SIL---------PYS 91 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCS-----CCCCCSEEEEEEEEC----CEEEEEEEECCCCTT-CCC---------CGG
T ss_pred EEEECCCCcCHHHHHHHHHhCCCCC-----CCCCccceEEEEEEEECCEEEEEEEEECCCccch-HHH---------HHH
Confidence 6899999999999999999999873 2345666555444443 3456789999996522 211 122
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH-HHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP-VLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~-~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+.. ...-++...+.........+.|+++|+||+|+.+...+.. ...+........+...
T Consensus 92 ~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 166 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLH-----SFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMES 166 (201)
T ss_dssp GTTTCCEEEEEEETTCHH-----HHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred HHhcCCEEEEEEeCCCHH-----HHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEE
Confidence 356789998766443211 1111222222111222235789999999999865444332 2222222333356788
Q ss_pred CCccCCCchhhHHHHHhhcC
Q 004126 159 QAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lp 178 (772)
|+..+.+++++|+.....+.
T Consensus 167 Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 167 SARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp CTTCHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998776553
No 79
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.09 E-value=4.6e-10 Score=109.04 Aligned_cols=161 Identities=15% Similarity=0.104 Sum_probs=93.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.|..|...... ..+.+++..+ ........+.++||||.+ +. . ......+
T Consensus 11 i~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~--~~~~~~~~~~l~Dt~G~~---~~---~----~~~~~~~ 77 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVKGTFRDTYIP-TIEDTYRQVI--SCDKSVCTLQITDTTGSH---QF---P----AMQRLSI 77 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCCCCTTSC-CCCEEEEEEE--EETTEEEEEEEEECCGGG---SC---H----HHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHcCCCCCcccC-ccccceeEEE--EECCEEEEEEEEeCCChH---Hh---H----HHHHHhh
Confidence 78999999999999999999887632110 1111222111 111223478999999954 11 1 2233456
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC-CCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~-~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.+...+..... .-...+..+.+ +... ...|+++|+||.|+.+.+.......+.....--.+...|+
T Consensus 78 ~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~----~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (199)
T 2gf0_A 78 SKGHAFILVFSVTSKQSLE-ELGPIYKLIVQ----IKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSA 152 (199)
T ss_dssp HHCSEEEEEEETTCHHHHH-TTHHHHHHHHH----HHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred ccCCEEEEEEECcCHHHHH-HHHHHHHHHHH----HhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEec
Confidence 7789888766543221111 11112222222 1111 3678999999999865332222222222222224677899
Q ss_pred ccCCCchhhHHHHHhhcCCC
Q 004126 161 HMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lph~ 180 (772)
..+.+++++|+.....+...
T Consensus 153 ~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 153 KMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp TTTBSHHHHHHHHHHHCSSS
T ss_pred CCCCCHHHHHHHHHHHHhhh
Confidence 99999999999988877654
No 80
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.09 E-value=4.4e-10 Score=108.94 Aligned_cols=156 Identities=13% Similarity=0.011 Sum_probs=94.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+..+.... .+.+|............ ..+.++||||.. .-+. ....
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~---------~~~~ 84 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDTYTESY----ISTIGVDFKIRTIELDGKTIKLQIWDTAGQE-RFRT---------ITSS 84 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCSCC----CCCSSEEEEEEEEEETTEEEEEEEEEECCSG-GGCT---------THHH
T ss_pred EEEECcCCCCHHHHHHHHHcCCCCCCC----CCcccceEEEEEEEECCEEEEEEEEECCCcH-hhhh---------hHHH
Confidence 689999999999999999998886532 23344444333333332 478999999954 1111 2234
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH-HHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP-VLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~-~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+.. ...-++...+.. .-......|+++|+||+|+.+...+.. ...+....+.-.+.+.
T Consensus 85 ~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~i-~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (196)
T 3tkl_A 85 YYRGAHGIIVVYDVTDQE-----SFNNVKQWLQEI-DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 158 (196)
T ss_dssp HHTTCSEEEEEEETTCHH-----HHHTHHHHHHHH-HHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEE
T ss_pred HHhhCCEEEEEEECcCHH-----HHHHHHHHHHHH-HHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEE
Confidence 467899998766443311 111111111111 112235789999999999865544432 2222222222346677
Q ss_pred CCccCCCchhhHHHHHhhc
Q 004126 159 QAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~L 177 (772)
|+..+.+++++|+.....+
T Consensus 159 Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 159 SAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 8999999999988765544
No 81
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.08 E-value=3e-10 Score=107.28 Aligned_cols=151 Identities=16% Similarity=0.048 Sum_probs=94.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|++..|.. ...|.|.-..........+.++||||..... . .....+
T Consensus 10 i~v~G~~~~GKssl~~~l~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-~---------~~~~~~ 72 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQVGEVVT-------TIPTIGFNVETVTYKNLKFQVWDLGGLTSIR-P---------YWRCYY 72 (171)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSCCC-------CCCCSSEEEEEEEETTEEEEEEEECCCGGGG-G---------GGGGGC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-------cCCcCccceEEEEECCEEEEEEECCCChhhh-H---------HHHHHh
Confidence 7899999999999999999988752 1234455444444456789999999975211 1 112345
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCCChhchHHHHHHHHHHHh-----h
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-----D 153 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-----~ 153 (772)
..+|++|+.+...+.. ...-+ .+....+... ...|+++|+||.|+.+.....+ +.+.+...+ -
T Consensus 73 ~~~d~ii~v~d~~~~~-----s~~~~---~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~ 143 (171)
T 1upt_A 73 SNTDAVIYVVDSCDRD-----RIGIS---KSELVAMLEEEELRKAILVVFANKQDMEQAMTSSE-MANSLGLPALKDRKW 143 (171)
T ss_dssp TTCSEEEEEEETTCCT-----THHHH---HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH-HHHHHTGGGCTTSCE
T ss_pred ccCCEEEEEEECCCHH-----HHHHH---HHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHH-HHHHhCchhccCCce
Confidence 6899998866543322 11111 1111122222 5789999999999865433222 222221111 0
Q ss_pred cCCCCCCccCCCchhhHHHHHhhcC
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
.+.+.|+..+.+++++|+.....++
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 144 QIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCcCHHHHHHHHHHHHh
Confidence 3567899999999999998876654
No 82
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.08 E-value=1.9e-10 Score=111.66 Aligned_cols=159 Identities=10% Similarity=-0.056 Sum_probs=93.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.|.+|..... +...+|..............+.++||||.... +. .....+
T Consensus 25 i~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~---------~~~~~~ 92 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADDSFTPAFV--STVGIDFKVKTVYRHDKRIKLQIWDTAGQERY-RT---------ITTAYY 92 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCCCEEEEEEEEETTEEEEEEEEECCSCCSS-CC---------SGGGGG
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCcC--CceeEEEEEEEEEECCeEEEEEEEeCCCcHHH-hh---------hHHHhc
Confidence 6899999999999999999998864221 11112222221122223458899999996521 11 112346
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.+...+..... .-..++..+.+ ......|+++|+||+|+.+...+. +.+.+..+.+--.+...|+
T Consensus 93 ~~~d~ii~v~d~~~~~s~~-~~~~~~~~i~~-----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFA-AVQDWATQIKT-----YSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASA 166 (189)
T ss_dssp TTCSEEEEEEETTCHHHHH-THHHHHHHHHH-----HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred cCCCEEEEEEECCCHHHHH-HHHHHHHHHHH-----hcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence 7899998766543211100 00111222211 123578999999999986433322 2222222223225678899
Q ss_pred ccCCCchhhHHHHHhhcC
Q 004126 161 HMETPLSEFFNVEVVALS 178 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lp 178 (772)
..+.+++++|+.....++
T Consensus 167 ~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 167 KENINVKQVFERLVDVIC 184 (189)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998776553
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.08 E-value=1.7e-10 Score=112.23 Aligned_cols=156 Identities=12% Similarity=0.036 Sum_probs=92.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|||||||+|+|.|.+|..++. ..|.|.-..........+.++||||..... . .....+
T Consensus 20 i~v~G~~~~GKSsl~~~l~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~---------~~~~~~ 84 (199)
T 4bas_A 20 VVMCGLDNSGKTTIINQVKPAQSSSKHI-----TATVGYNVETFEKGRVAFTVFDMGGAKKFR-G---------LWETYY 84 (199)
T ss_dssp EEEECCTTSCHHHHHHHHSCCC----CC-----CCCSSEEEEEEEETTEEEEEEEECCSGGGG-G---------GGGGGC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccccc-----ccccceeEEEEEeCCEEEEEEECCCCHhHH-H---------HHHHHH
Confidence 7899999999999999999999986421 224444444444567789999999985211 1 112335
Q ss_pred hcccEEEEeeccccccccccCCHHHH-HHHHHHHHh--hc--C--CCCccEEEEEeCCCCCChhchHHHHHHHHH--HH-
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLL-KTVFQVMMR--LF--S--PRKTTLMFVIRDKTRTPLENLEPVLREDIQ--KI- 151 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lL-ktv~evnl~--lf--~--~~k~~llfVIrd~d~t~~e~l~~~l~~~l~--~i- 151 (772)
..+|++|+.+...+.. ...-+ +.+.++.-. +. . ....|+++|+||+|+.+....++ +.+.+. .+
T Consensus 85 ~~~d~ii~v~D~~~~~-----s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~-~~~~~~~~~~~ 158 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHL-----RLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAE-LVEILDLTTLM 158 (199)
T ss_dssp TTCSEEEEEEETTCGG-----GHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHH-HHHHHTHHHHH
T ss_pred hcCCEEEEEEECCcHH-----HHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHH-HHHHhcchhhc
Confidence 7899998866543321 11111 111111000 00 0 03789999999999865533221 112221 11
Q ss_pred ---hhcCCCCCCccCCCchhhHHHHHhhcC
Q 004126 152 ---WDSVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 152 ---w~~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
--.+...|+..+.+++++|+.....+.
T Consensus 159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 159 GDHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp TTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred cCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 113567899999999999998776554
No 84
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.08 E-value=3.3e-10 Score=108.85 Aligned_cols=155 Identities=14% Similarity=0.063 Sum_probs=92.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCC--cEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEP--CTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~--qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|++..|.. ....|+............. .+-++||||... -+. ....
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~---------~~~~ 85 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKIFVD-----DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE-FSA---------MREQ 85 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCS-----CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGG-GCS---------SHHH
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC-----CCCCCccceeEEEEEeCCcEEEEEEEECCCchh-hHH---------HHHH
Confidence 6899999999999999999987753 2334444443333333333 345699999641 111 1123
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+.. ...-++...+...+.......|+++|.||.|+.+...+. +...+....+--.+.+.
T Consensus 86 ~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 160 (183)
T 3kkq_A 86 YMRTGDGFLIVYSVTDKA-----SFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIET 160 (183)
T ss_dssp HHHHCSEEEEEEETTCHH-----HHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEE
T ss_pred HHhcCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEe
Confidence 356799998766543211 111122222222233334678999999999976433332 22233333332346677
Q ss_pred CCc-cCCCchhhHHHHHhh
Q 004126 159 QAH-METPLSEFFNVEVVA 176 (772)
Q Consensus 159 sa~-~~~~l~dlf~~~~~~ 176 (772)
|+. .+.+++++|+.....
T Consensus 161 Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 161 SAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp BCSSSCBSHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHH
Confidence 898 899999999877654
No 85
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.08 E-value=3e-10 Score=106.79 Aligned_cols=155 Identities=8% Similarity=-0.020 Sum_probs=90.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|+|..|.... .+.++.......... ....+.++||||.... +. ....
T Consensus 8 i~v~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~---------~~~~ 73 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKGIFTKDY----KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF-DA---------ITKA 73 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHCCCCCCS----SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGT-TC---------CCHH
T ss_pred EEEECcCCCCHHHHHHHHHcCCCCCCC----CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhH-HH---------HHHH
Confidence 689999999999999999998875321 121222222222222 2357899999996421 11 1223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhch-HHHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL-EPVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l-~~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+..... .-...+..+.+ .. .+.|+++|+||+|+.+...+ .+.+.+.....--.+.+.
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~---~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFE-AISSWREKVVA---EV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRT 146 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHH-THHHHHHHHHH---HH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEC
T ss_pred HhcCCCEEEEEEECcCHHHHH-HHHHHHHHHHH---hC---CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEE
Confidence 456899998766543311011 00111222222 11 47899999999997543222 222233333332356788
Q ss_pred CCccCCCchhhHHHHHhhc
Q 004126 159 QAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~L 177 (772)
|+..+.+++++|+.....+
T Consensus 147 Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 147 SVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp BTTTTBSSHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHH
Confidence 9999999999998876543
No 86
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.07 E-value=7.7e-10 Score=108.43 Aligned_cols=158 Identities=9% Similarity=-0.032 Sum_probs=94.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.|.+|..... +...+|..............+.++||||.. + + +......+
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---~------~-~~~~~~~~ 78 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDSFTPAFV--STVGIDFKVKTIYRNDKRIKLQIWDTAGLE---R------Y-RTITTAYY 78 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCCCSCCC--CCCSEEEEEEEEEETTEEEEEEEEEECCSG---G------G-HHHHHTTG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcC--CccceeEEEEEEEECCeEEEEEEEECCCch---h------h-cchHHHhh
Confidence 6899999999999999999998864221 111112222222222234588999999974 1 1 22345567
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.+...+.. ...-++...+. +.-+.....|+++|+||+|+.+...+. +...+..+.+--.+...|+
T Consensus 79 ~~~d~ii~v~d~~~~~-----s~~~~~~~~~~-i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
T 1zbd_A 79 RGAMGFILMYDITNEE-----SFNAVQDWSTQ-IKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASA 152 (203)
T ss_dssp GGCSEEEEEEETTCHH-----HHHHHHHHHHH-HHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred cCCCEEEEEEECcCHH-----HHHHHHHHHHH-HHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEEC
Confidence 8899998766543211 11112222111 111223578999999999986533322 2222222222225677899
Q ss_pred ccCCCchhhHHHHHhhc
Q 004126 161 HMETPLSEFFNVEVVAL 177 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~L 177 (772)
..+.+++++|+.....+
T Consensus 153 ~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 153 KDNINVKQTFERLVDVI 169 (203)
T ss_dssp TTTBSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998876544
No 87
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.07 E-value=1.5e-10 Score=112.81 Aligned_cols=158 Identities=9% Similarity=-0.047 Sum_probs=94.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.|..|..... +...++..............+.++||||.. .+ +......+
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---------~~-~~~~~~~~ 93 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDTFTPAFV--STVGIDFKVKTVYRHEKRVKLQIWDTAGQE---------RY-RTITTAYY 93 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTCCCEE--EEETTTEEEEEEEETTTTEEEEEECHHHHH---------HC-HHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhcCCCCcccC--CCeeeEEEEEEEEECCEEEEEEEEeCCChH---------HH-HHHHHHHH
Confidence 7899999999999999999987753221 111122222222333345679999999932 11 23455667
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.+...+... ..-++...+.. .-+.....|+++|.||.|+.+..... ....+.....--.+.+.|+
T Consensus 94 ~~~d~~i~v~d~~~~~s-----~~~~~~~~~~i-~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 167 (191)
T 3dz8_A 94 RGAMGFILMYDITNEES-----FNAVQDWATQI-KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASA 167 (191)
T ss_dssp TTCCEEEEEEETTCHHH-----HHTHHHHHHHH-HHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred ccCCEEEEEEECcCHHH-----HHHHHHHHHHH-HHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEEC
Confidence 88999988665433211 11112221111 11223578999999999975433222 2222222223225678899
Q ss_pred ccCCCchhhHHHHHhhc
Q 004126 161 HMETPLSEFFNVEVVAL 177 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~L 177 (772)
..+.+++++|+.....+
T Consensus 168 ~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 168 KENISVRQAFERLVDAI 184 (191)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999876654
No 88
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.06 E-value=2.5e-10 Score=108.72 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=92.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.+.+|.... .+.+|...........+..+.++||||...- +... ...+
T Consensus 11 i~v~G~~~~GKssl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~~---------~~~~ 76 (178)
T 2lkc_A 11 VTIMGHVDHGKTTLLDAIRHSKVTEQE----AGGITQHIGAYQVTVNDKKITFLDTPGHEAF-TTMR---------ARGA 76 (178)
T ss_dssp EEEESCTTTTHHHHHHHHHTTCSSCSS----CCSSSTTCCCCEEEETTEEEEESCCCSSSSS-SCSC---------CSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCccccCC----CCceeEeeeEEEEEeCCceEEEEECCCCHHH-HHHH---------HHHH
Confidence 789999999999999999999886422 3445555544444445678899999997522 2111 1235
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh--hchHHHHHHHHHH---Hh---h
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL--ENLEPVLREDIQK---IW---D 153 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~--e~l~~~l~~~l~~---iw---~ 153 (772)
..+|++|+.+...+. .....+..+.. ......|+++|+||.|+.+. +.+...+.+ ... -| -
T Consensus 77 ~~~d~~i~v~d~~~~-----~~~~~~~~l~~-----~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~ 145 (178)
T 2lkc_A 77 QVTDIVILVVAADDG-----VMPQTVEAINH-----AKAANVPIIVAINKMDKPEANPDRVMQELME-YNLVPEEWGGDT 145 (178)
T ss_dssp CCCCEEEEEEETTCC-----CCHHHHHHHHH-----HGGGSCCEEEEEETTTSSCSCHHHHHHHHTT-TTCCBTTTTSSE
T ss_pred hhCCEEEEEEECCCC-----CcHHHHHHHHH-----HHhCCCCEEEEEECccCCcCCHHHHHHHHHh-cCcChhHcCCcc
Confidence 678999876643221 11222222211 11257889999999998642 222222111 100 02 1
Q ss_pred cCCCCCCccCCCchhhHHHHHhhc
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
.+.+.|+..+.+++++|+.....+
T Consensus 146 ~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 146 IFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHHHHHhh
Confidence 456788888999999988766544
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.06 E-value=4.8e-10 Score=108.94 Aligned_cols=155 Identities=12% Similarity=0.038 Sum_probs=95.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.|..+.+. ...+|.|.........+..+.++||||...-.. .....+
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~ 88 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKPSNAQSQ-----NILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN----------LWEHYY 88 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSCGGGCCS-----SCCCCSSEEEEEEECSSCEEEEEEECCSTTTGG----------GGGGGG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCC-----CcCCccceeEEEEEECCEEEEEEECCCCHHHHH----------HHHHHH
Confidence 78999999999999999999884332 234566766666666678999999999652111 112345
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC--CCccEEEEEeCCCCCChhchHHHHHHHHH--HH---hhc
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRTPLENLEPVLREDIQ--KI---WDS 154 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~--~k~~llfVIrd~d~t~~e~l~~~l~~~l~--~i---w~~ 154 (772)
..+|++|+.+...+.. ...-+...+...++.... .+.|+++|+||+|+.+....+ .+.+.+. .+ --.
T Consensus 89 ~~~d~ii~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~ 162 (190)
T 2h57_A 89 KEGQAIIFVIDSSDRL-----RMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSV-KVSQLLCLENIKDKPWH 162 (190)
T ss_dssp GGCSEEEEEEETTCHH-----HHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHH-HHHHHHTGGGCCSSCEE
T ss_pred hcCCEEEEEEECCCHH-----HHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHH-HHHHHhChhhccCCceE
Confidence 7899998766543211 111111111111111111 478999999999986432222 2222221 11 013
Q ss_pred CCCCCCccCCCchhhHHHHHhhc
Q 004126 155 VPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
+...|+..+.+++++|+.....+
T Consensus 163 ~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 163 ICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHC
T ss_pred EEEccCCCCcCHHHHHHHHHHHH
Confidence 56789999999999999877655
No 90
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.05 E-value=7.1e-10 Score=110.03 Aligned_cols=152 Identities=13% Similarity=0.047 Sum_probs=93.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeE----ecCC----------CCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR----CAGI----------EPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i----~~~~----------~~qil~lDteG~~s~er~e 67 (772)
|.|+|.+|+|||||+|+|.+.+|.. ...+|.++-... .... ...+.++||||..
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------ 95 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNKFNP------KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------ 95 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSCCCC------EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCc------CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence 7899999999999999999988842 334454432211 1111 3578999999932
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCCChhchH-HH
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRTPLENLE-PV 143 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t~~e~l~-~~ 143 (772)
.| +......+..+|++|+.+...+ ..-+..+.+..-.+... ...|+++|+||+|+.+...+. ..
T Consensus 96 ---~~-~~~~~~~~~~~d~iilV~D~~~--------~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~ 163 (217)
T 2f7s_A 96 ---RF-RSLTTAFFRDAMGFLLMFDLTS--------QQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQ 163 (217)
T ss_dssp ---HH-HHHHHHHHTTCCEEEEEEETTC--------HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHH
T ss_pred ---hH-HhHHHHHhcCCCEEEEEEECcC--------HHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHH
Confidence 22 3445666789999988664322 11222222211112211 568999999999986433332 22
Q ss_pred HHHHHHHHhhcCCCCCCccCCCchhhHHHHHhhc
Q 004126 144 LREDIQKIWDSVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 144 l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
+.+......-.+...|+..+.+++++|+.....+
T Consensus 164 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 164 ARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp HHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 2333333323466779999999999998776543
No 91
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.04 E-value=8.8e-10 Score=108.47 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=84.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEe--cCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC--AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~--~~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|||.+|+|||||+|++.|.+..+.+. .++|+........ .+...+++++||.|..+.++.-- .. .+
T Consensus 9 v~lvG~~~vGKSsL~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~-~~------~~ 78 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFAGVHDSMDSD---XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLH-DH------CM 78 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSCCC-------GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTG-GG------HH
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCcCcc---ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHH-Hh------hc
Confidence 7899999999999999999877665542 2334433322222 22234678999999886443311 11 12
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh-cCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD-SVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~-~i~kp 158 (772)
..+|++|+.....+.. ...-+....+...++......|+++|.||+|+.....+...-.+.+...+. .+...
T Consensus 79 --~~~~~~i~v~dv~~~~-----s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~ 151 (192)
T 2cjw_A 79 --QVGDAYLIVYSITDRA-----SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIET 151 (192)
T ss_dssp --HHCSEEEEEEETTCHH-----HHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred --ccCCEEEEEEECCCHH-----HHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEe
Confidence 3455554433222211 111112222111122222468899999999975432222111111111222 45678
Q ss_pred CCccCCCchhhHHHHHhhc
Q 004126 159 QAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~L 177 (772)
|+..+.+++++|+.....+
T Consensus 152 SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 152 SAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHH
Confidence 9999999999999877655
No 92
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.03 E-value=2.3e-10 Score=111.61 Aligned_cols=156 Identities=13% Similarity=0.003 Sum_probs=92.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+.+|.. ....|+........... ...+.++||||...- +. ....
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~---------~~~~ 90 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKGEIPT-----AYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY-DR---------LRPL 90 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCS-----SCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-TT---------TGGG
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCC-----ccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHH-HH---------HhHh
Confidence 6899999999999999999998742 23344443333333222 245689999995411 11 1223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh---hchHHHHHHHHHHH-hhcC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL---ENLEPVLREDIQKI-WDSV 155 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~---e~l~~~l~~~l~~i-w~~i 155 (772)
.+..+|++|+.+...+..........++..+.+ . ....|+++|.||.|+.+. +...+...+....+ +..+
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH-----Y-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAY 164 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----H-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCE
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHH-----h-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEE
Confidence 467899998766443221100000011111111 1 146899999999997532 22223333333333 2236
Q ss_pred CCCCCccCCCchhhHHHHHhhcC
Q 004126 156 PKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
...|+..+.+++++|+.....+.
T Consensus 165 ~~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 165 IEASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHHH
Confidence 67899999999999998876553
No 93
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.03 E-value=9.9e-10 Score=107.43 Aligned_cols=155 Identities=13% Similarity=0.052 Sum_probs=92.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceee--EecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA--RCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~--i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+.+|.... ..|+...+.. ........+.++||||... + .....
T Consensus 31 i~v~G~~~vGKSsli~~l~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~---------~~~~~ 94 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFLTKRFIWEY-----DPTLESTYRHQATIDDEVVSMEILDTAGQED--T---------IQREG 94 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCSCC-----CTTCCEEEEEEEEETTEEEEEEEEECCCCCC--C---------HHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccc-----CCCCCceEEEEEEECCEEEEEEEEECCCCCc--c---------cchhh
Confidence 689999999999999999998885321 2222222222 1122235688999999873 1 12234
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+... ..-++...+...........|+++|.||.|+.+...+. +...+......-.+.+.
T Consensus 95 ~~~~~d~iilv~D~~~~~s-----~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 169 (196)
T 2atv_A 95 HMRWGEGFVLVYDITDRGS-----FEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYEC 169 (196)
T ss_dssp HHHHCSEEEEEEETTCHHH-----HHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEEC
T ss_pred hhccCCEEEEEEECcCHHH-----HHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEE
Confidence 4567899987665433221 11112222212222223578999999999975432222 22222222222246678
Q ss_pred CCccCC-CchhhHHHHHhhc
Q 004126 159 QAHMET-PLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~-~l~dlf~~~~~~L 177 (772)
|+..+. +++++|+.....+
T Consensus 170 Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 170 SACTGEGNITEIFYELCREV 189 (196)
T ss_dssp CTTTCTTCHHHHHHHHHHHH
T ss_pred CCCcCCcCHHHHHHHHHHHH
Confidence 999999 9999999876544
No 94
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.02 E-value=8.9e-10 Score=104.93 Aligned_cols=163 Identities=11% Similarity=-0.034 Sum_probs=94.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC---CcEEEEecCCCCCcCCCCCccHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE---PCTLIMDLEGTDGRERGEDDTAFEKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~---~qil~lDteG~~s~er~e~~~~fe~k~al 78 (772)
|.|+|.+|+|||||+|+|.+.+|.... .+.++...........+ ..+.++||||... -+. ...
T Consensus 9 i~v~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~-~~~---------~~~ 74 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQETFGKQY----KQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI-GGK---------MLD 74 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGGGTTHHH----HHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT-TCT---------THH
T ss_pred EEEECcCCCCHHHHHHHHHhCcCCCCC----CCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc-ccc---------hhh
Confidence 789999999999999999998875211 12222233333333322 5889999999641 111 123
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCC
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPK 157 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~k 157 (772)
..+..+|++|+.+...+..... .-...++.+.+..-. ....+++++|.||+|+.+...+. +...+......-.+..
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~--~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 2hxs_A 75 KYIYGAQGVLLVYDITNYQSFE-NLEDWYTVVKKVSEE--SETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHF 151 (178)
T ss_dssp HHHTTCSEEEEEEETTCHHHHH-THHHHHHHHHHHHHH--HTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEE
T ss_pred HHHhhCCEEEEEEECCCHHHHH-HHHHHHHHHHHHhcc--cCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEE
Confidence 3467899998866543321111 001112222211000 01345589999999975432222 2222222222224677
Q ss_pred CCCccCCCchhhHHHHHhhcCCCc
Q 004126 158 PQAHMETPLSEFFNVEVVALSSFE 181 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~Lph~~ 181 (772)
.|+..+.+++++|+.....++...
T Consensus 152 ~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 152 VSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp ECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred EeCCCCCCHHHHHHHHHHHHHhhh
Confidence 899999999999999888776653
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.02 E-value=1.9e-09 Score=104.64 Aligned_cols=155 Identities=10% Similarity=0.034 Sum_probs=93.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|.+|+|||||+|+|.|..+...++ |.|............+.++||||... + +......+
T Consensus 19 i~ivG~~~vGKSsL~~~l~~~~~~~~~~-------t~g~~~~~~~~~~~~l~i~Dt~G~~~---------~-~~~~~~~~ 81 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLASEDISHITP-------TQGFNIKSVQSQGFKLNVWDIGGQRK---------I-RPYWRSYF 81 (181)
T ss_dssp EEEEESTTSSHHHHHHHHCCSCCEEEEE-------ETTEEEEEEEETTEEEEEEECSSCGG---------G-HHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcccC-------cCCeEEEEEEECCEEEEEEECCCCHH---------H-HHHHHHHh
Confidence 7899999999999999999998876543 22322222223456889999999641 1 23344566
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHh-----hcCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-----DSVP 156 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-----~~i~ 156 (772)
..+|++++.+...+.. ...-++..+.-.++.......|+++|.||+|+.+....+ .+.+.+..-+ -.+.
T Consensus 82 ~~~~~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (181)
T 1fzq_A 82 ENTDILIYVIDSADRK-----RFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPAS-EIAEGLNLHTIRDRVWQIQ 155 (181)
T ss_dssp TTCSEEEEEEETTCGG-----GHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHH-HHHHHTTGGGCCSSCEEEE
T ss_pred CCCCEEEEEEECcCHH-----HHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHH-HHHHHhCchhccCCceEEE
Confidence 8899998866543321 111111111111111112568999999999986443322 2222221101 1255
Q ss_pred CCCCccCCCchhhHHHHHhhcCC
Q 004126 157 KPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
+.|+..+.+++++|+.....++.
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 156 SCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp ECCTTTCTTHHHHHHHHHHTC--
T ss_pred EccCCCCCCHHHHHHHHHHHHHh
Confidence 78999999999999988877653
No 96
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.02 E-value=3.8e-10 Score=106.47 Aligned_cols=155 Identities=12% Similarity=0.021 Sum_probs=88.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccc--eeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGI--WMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGi--w~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|+|.+|+|||||+|+|.+.+|... ...|-|. ....... ....+.++||||.... + ...
T Consensus 9 i~v~G~~~~GKssli~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-~---------~~~ 72 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCENKFNDK------HITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF-H---------ALG 72 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHCCCCSS------CCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred EEEECcCCCCHHHHHHHHHcCCCCcC------CCCccceEEEEEEEEECCEEEEEEEEECCCcHhh-h---------hhH
Confidence 68999999999999999999887532 2222222 2122222 2347889999995411 1 112
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~ 156 (772)
...+..+|++|+.+...+.. ...-++...+. +.-......|+++|+||.|+.+...+. +...+.....-..+.
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~-~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (170)
T 1z08_A 73 PIYYRDSNGAILVYDITDED-----SFQKVKNWVKE-LRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHY 146 (170)
T ss_dssp CCSSTTCSEEEEEEETTCHH-----HHHHHHHHHHH-HHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE
T ss_pred HHHhccCCEEEEEEECcCHH-----HHHHHHHHHHH-HHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEE
Confidence 23456899998766543211 11111111111 111112468999999999975432222 222222222222456
Q ss_pred CCCCccCCCchhhHHHHHhhcC
Q 004126 157 KPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
+.|+..+.+++++|+.....++
T Consensus 147 ~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 147 HTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHh
Confidence 7799999999999998776554
No 97
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.02 E-value=3e-10 Score=110.68 Aligned_cols=158 Identities=14% Similarity=0.031 Sum_probs=90.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.+.+|...... ...++.....-........+.++||||... -+. .....+
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~---------~~~~~~ 91 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVNIDGKQIKLQIWDTAGQES-FRS---------ITRSYY 91 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGG-TSC---------CCHHHH
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCCC--cccceeEEEEEEECCEEEEEEEEECCCchh-hhh---------hHHHHh
Confidence 68999999999999999999988754321 111111111111122235789999999642 111 122345
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCCCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kpsa 160 (772)
..+|++|+.+...+.. ...-++..++. +.-......|+++|+||.|+.+...+. +...+......-.+...|+
T Consensus 92 ~~~d~ii~v~d~~~~~-----s~~~~~~~l~~-i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 165 (191)
T 2a5j_A 92 RGAAGALLVYDITRRE-----TFNHLTSWLED-ARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSA 165 (191)
T ss_dssp TTCSEEEEEEETTCHH-----HHHTHHHHHHH-HHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECT
T ss_pred ccCCEEEEEEECCCHH-----HHHHHHHHHHH-HHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeC
Confidence 6899998866543311 11111111111 111123578999999999985433332 2222222222224667899
Q ss_pred ccCCCchhhHHHHHhhc
Q 004126 161 HMETPLSEFFNVEVVAL 177 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~L 177 (772)
..+.+++++|+.....+
T Consensus 166 ~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 166 KTACNVEEAFINTAKEI 182 (191)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998776544
No 98
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.01 E-value=1.1e-09 Score=119.81 Aligned_cols=165 Identities=15% Similarity=0.045 Sum_probs=95.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|++|+|||||||+|.|..+.+ + +.+.||++...+.....+..+.++||+|....-....-..| +.++..+
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~-~---~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f--~~tl~~~ 255 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKV-D---TKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF--FVTLSEA 255 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC---------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH--HHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHCCCccc-c---CCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH--HHHHHHH
Confidence 8899999999999999999998743 2 46789998887777766678899999997421111100112 3456678
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH---HHHHHHHHH-h--hcC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP---VLREDIQKI-W--DSV 155 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~---~l~~~l~~i-w--~~i 155 (772)
..+|++++.+...+. ......-++.+.++ +..++....|+++|.||+|..+.. ... .+......+ - ..+
T Consensus 256 ~~aD~il~VvD~s~~---~~~~~~~~~~~~~~-L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 256 KYSDALILVIDSTFS---ENLLIETLQSSFEI-LREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp GGSSEEEEEEETTSC---HHHHHHHHHHHHHH-HHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEE
T ss_pred HhCCEEEEEEECCCC---cchHHHHHHHHHHH-HHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcE
Confidence 899999876643221 10011112222222 222333467899999999975432 111 111111122 1 135
Q ss_pred CCCCCccCCCchhhHHHHHhhc
Q 004126 156 PKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~L 177 (772)
.+.|+..+.+++++++.+...+
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHh
Confidence 6789999999999998876544
No 99
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.01 E-value=9.1e-10 Score=105.81 Aligned_cols=156 Identities=12% Similarity=0.000 Sum_probs=92.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|||||||+|+|++.+|.... .+.++............ ..+.++||||.. .+ +.....
T Consensus 13 i~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~-~~~~~~ 78 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEKKFKDDS----NHTIGVEFGSKIINVGGKYVKLQIWDTAGQE---------RF-RSVTRS 78 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSCCTTC----CCCSEEEEEEEEEEETTEEEEEEEEEECCSG---------GG-HHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCC----CCccceEEEEEEEEECCEEEEEEEEeCCCcH---------HH-HHHHHH
Confidence 689999999999999999999887532 22222222222222222 478999999953 11 223455
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+.. ...-++...+. +......+.|+++|+||+|+.+...+. ....+.....--.+...
T Consensus 79 ~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~-~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (186)
T 2bme_A 79 YYRGAAGALLVYDITSRE-----TYNALTNWLTD-ARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLET 152 (186)
T ss_dssp TSTTCSEEEEEEETTCHH-----HHHTHHHHHHH-HHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHhcCCEEEEEEECcCHH-----HHHHHHHHHHH-HHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEe
Confidence 678899998766543311 11111111111 111223578999999999975433222 12222222221235678
Q ss_pred CCccCCCchhhHHHHHhhc
Q 004126 159 QAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~L 177 (772)
|+..+.+++++|+.....+
T Consensus 153 Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 153 SALTGENVEEAFVQCARKI 171 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999998766544
No 100
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.01 E-value=7.7e-10 Score=108.24 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=87.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.|.+|.... .+.++.......... ....+.++||||.. .+ +.....
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---------~~-~~~~~~ 94 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDTFCEAC----KSTVGVDFKIKTVELRGKKIRLQIWDTAGQE---------RF-NSITSA 94 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC------------CCTTEEEEEEEEEETTEEEEEEEEEECCSG---------GG-HHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcCC----CCccceeEEEEEEEECCeEEEEEEEeCCCcH---------HH-HHHHHH
Confidence 689999999999999999999886432 122222222222222 23478999999943 11 233455
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHH-hhcCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKI-WDSVPK 157 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~i-w~~i~k 157 (772)
.+..+|++|+.+...+.. ...-++...+. +........|+++|+||+|+.+...+. +...+..+.+ -..+..
T Consensus 95 ~~~~~d~iilV~D~~~~~-----s~~~~~~~~~~-i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (192)
T 2il1_A 95 YYRSAKGIILVYDITKKE-----TFDDLPKWMKM-IDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCE 168 (192)
T ss_dssp HHHHCSEEEEEEETTCHH-----HHHTHHHHHHH-HHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEE
T ss_pred HhcCCCEEEEEEECcCHH-----HHHHHHHHHHH-HHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEE
Confidence 567899998866543211 11111211111 122233578999999999975433332 2222222222 123567
Q ss_pred CCCccCCCchhhHHHHHhhc
Q 004126 158 PQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~L 177 (772)
.|+..+.+++++|+.....+
T Consensus 169 ~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 169 ASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 89999999999998776543
No 101
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=1.1e-09 Score=106.13 Aligned_cols=156 Identities=13% Similarity=0.050 Sum_probs=91.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|||||||+|+|.+.+|....+ |.|.-.......+..+.++||||..... . .....+
T Consensus 19 i~v~G~~~~GKssl~~~l~~~~~~~~~~-------t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~---------~~~~~~ 81 (187)
T 1zj6_A 19 VIIVGLDNAGKTTILYQFSMNEVVHTSP-------TIGSNVEEIVINNTRFLMWDIGGQESLR-S---------SWNTYY 81 (187)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSCEEEEC-------CSCSSCEEEEETTEEEEEEECCC----C-G---------GGHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcCcC-------CCccceEEEEECCEEEEEEECCCCHhHH-H---------HHHHHh
Confidence 7899999999999999999888864332 2222222233346789999999985211 1 112335
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hh----cCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WD----SVP 156 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~----~i~ 156 (772)
..+|++|+.+...+.. ...-+...+...++.......|+++|+||.|+.+....+ .+.+.+... .. .+.
T Consensus 82 ~~~d~ii~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~-~i~~~~~~~~~~~~~~~~~ 155 (187)
T 1zj6_A 82 TNTEFVIVVVDSTDRE-----RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA-EISQFLKLTSIKDHQWHIQ 155 (187)
T ss_dssp TTCCEEEEEEETTCTT-----THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHH-HHHHHHTGGGCCSSCEEEE
T ss_pred cCCCEEEEEEeCCCHH-----HHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHH-HHHHHhChhhhcCCCcEEE
Confidence 7899998866543321 111121111111111112578999999999986432222 222222110 01 356
Q ss_pred CCCCccCCCchhhHHHHHhhcCCC
Q 004126 157 KPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
..|+..+.+++++|+.....++..
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred EccCCCCcCHHHHHHHHHHHHHHH
Confidence 789999999999999888776543
No 102
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.01 E-value=8.5e-10 Score=106.43 Aligned_cols=153 Identities=13% Similarity=0.028 Sum_probs=93.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.|.++.. ...|.|.-..........+.++||||..... ......+
T Consensus 21 i~v~G~~~~GKssl~~~l~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~~~~ 83 (186)
T 1ksh_A 21 LLMLGLDNAGKTTILKKFNGEDVDT-------ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR----------SYWRNYF 83 (186)
T ss_dssp EEEECSTTSSHHHHHHHHTTCCCSS-------CCCCSSEEEEEEEETTEEEEEEEECCSHHHH----------TTGGGGC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCc-------ccccCccceEEEEECCEEEEEEECCCCHhHH----------HHHHHHh
Confidence 6899999999999999999987221 2234444333344456789999999975211 1122346
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC---CCCccEEEEEeCCCCCChhchHHHHHHHHHH-----Hhh
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS---PRKTTLMFVIRDKTRTPLENLEPVLREDIQK-----IWD 153 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~---~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~-----iw~ 153 (772)
..+|++|+.+...+.. .. ..+.+...++.. ....|+++|+||.|+.+....+ .+.+.+.. .--
T Consensus 84 ~~~d~ii~v~d~~~~~-----s~---~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~ 154 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQ-----RM---QDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN-AIQEALELDSIRSHHW 154 (186)
T ss_dssp TTCSEEEEEEETTCGG-----GH---HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH-HHHHHTTGGGCCSSCE
T ss_pred cCCCEEEEEEECcCHH-----HH---HHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHH-HHHHHhChhhccCCce
Confidence 7899998866543321 11 111111112222 2578999999999986543322 22222210 001
Q ss_pred cCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
.+.+.|+..+.+++++|+.....++..
T Consensus 155 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 155 RIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 356788999999999999888777654
No 103
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=7.5e-10 Score=107.75 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=91.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+..|.. ....|+...........+ ..+.++||||.... +. ....
T Consensus 21 i~v~G~~~~GKssli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~---------~~~~ 85 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYANDAFPE-----EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY-DR---------LRPL 85 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHSSCCC-----SCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSS-TT---------TGGG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-----CCCCcccceeEEEEEECCEEEEEEEEECCCCcch-hH---------HHHH
Confidence 6899999999999999999987742 234565544433333332 46789999997522 11 1123
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc------------hH-HHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN------------LE-PVLRE 146 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~------------l~-~~l~~ 146 (772)
.+..+|++|+.+...+..........++..+.+ . ....|+++|+||.|+.+... +. +...+
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKE-----Y-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----H-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----h-CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH
Confidence 467899998765443221111000011222221 1 13789999999999864321 11 11222
Q ss_pred HHHHHhh-cCCCCCCccCCCchhhHHHHHhhc
Q 004126 147 DIQKIWD-SVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 147 ~l~~iw~-~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
....+-. .+...|+..+.+++++|+.....+
T Consensus 160 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 160 LAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2222211 466789999999999998876654
No 104
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.01 E-value=3.8e-10 Score=112.10 Aligned_cols=161 Identities=7% Similarity=-0.092 Sum_probs=89.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC-CcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE-PCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~-~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|+|.+|+|||||+|+|+|.+|..... ....++............ ..+.++||||..... . . . ...
T Consensus 14 i~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~-~-~-------~~~ 81 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLDGRFEKNYN--ATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA-V-L-K-------DVY 81 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTTCSTTCEEE--TTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTS-C-C-C-------HHH
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCCC--CccceeeEEEEEEeCCCcEEEEEEEecCCchhhc-h-H-H-------HHH
Confidence 6899999999999999999988763221 111111111111111111 468999999975222 1 1 1 122
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH-HHHHHHHHHhhcCCCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP-VLREDIQKIWDSVPKPQ 159 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~-~l~~~l~~iw~~i~kps 159 (772)
+..+|++|+.+...+..... .-...++.+.. ......|+++|+||+|+.+...+.. ...+........+...|
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~-----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (218)
T 4djt_A 82 YIGASGAILFFDVTSRITCQ-NLARWVKEFQA-----VVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEIS 155 (218)
T ss_dssp HTTCSEEEEEEETTCHHHHH-THHHHHHHHHH-----HHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEB
T ss_pred hhcCCEEEEEEeCCCHHHHH-HHHHHHHHHHH-----hcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEe
Confidence 56799998766543321000 00011122211 1124689999999999875533332 22222222222466789
Q ss_pred CccCCCchhhHHHHHhhcCCC
Q 004126 160 AHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 160 a~~~~~l~dlf~~~~~~Lph~ 180 (772)
+..+.+++++|+.....+...
T Consensus 156 a~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 156 AKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp TTTTBTTTHHHHHHHHHHHCC
T ss_pred cCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999887666543
No 105
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.01 E-value=1.5e-09 Score=106.95 Aligned_cols=161 Identities=13% Similarity=0.058 Sum_probs=93.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|||.+|||||||+|+|.|.++.... .+.||.......... ...++.++||+|.... ..+++. .
T Consensus 26 i~vvG~~~vGKSsLi~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~------~~~~~~---~ 92 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFGGLQGDSAH----EPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA------GGWLRD---H 92 (195)
T ss_dssp EEEECSTTSSHHHHHHHTCCEECCGGG----TTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG------GHHHHH---H
T ss_pred EEEECCCCCCHHHHHHHHHhccCCccC----CCCcccceEEEEEEECCEEEEEEEEecCCCccc------hhhhHH---H
Confidence 789999999999999999987765422 233444433333222 2346788999998521 222332 3
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.....+..... .+.+.+.++ .........|+++|.||+|+.+...+. +...+.....--.+...
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~----~~~~~~~~i-~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~ 167 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFS----KVPETLLRL-RAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIET 167 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHH----THHHHHHHH-HHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEE
T ss_pred hhccCCEEEEEEECCCHHHHH----HHHHHHHHH-HHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEE
Confidence 356789988755433221111 111111111 111112468999999999986433222 12222221221246678
Q ss_pred CCccCCCchhhHHHHHhhcCCC
Q 004126 159 QAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lph~ 180 (772)
|+..+.+++++|+.....+...
T Consensus 168 Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 168 SAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp BTTTTBSHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999887766543
No 106
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.00 E-value=8.3e-10 Score=109.10 Aligned_cols=155 Identities=12% Similarity=0.069 Sum_probs=90.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccc--eeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGI--WMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGi--w~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|+|.+|+|||||+|+|.+.+|.. ...+|.|+ ........ ...+.++||||.. + | +...
T Consensus 32 i~vvG~~~vGKSsli~~l~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---~------~-~~~~ 95 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTGAFSE------RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE---R------F-RTIT 95 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCC----------------CEEEEEEEETTEEEEEEEECCTTCG---G------G-HHHH
T ss_pred EEEECcCCCCHHHHHHHHhhCCCCC------CCCCCcceEEEEEEEEECCEEEEEEEEECCCcH---h------H-HHHH
Confidence 7899999999999999999988863 23444432 22222222 2488999999963 1 1 2234
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhh-cC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWD-SV 155 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~-~i 155 (772)
...+..+|++|+.+...+..... .-...++.+.+ ....+.|+++|.||.|+.+...+. +.+.+..+...- .+
T Consensus 96 ~~~~~~~d~iilv~D~~~~~s~~-~~~~~~~~i~~-----~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 169 (201)
T 2hup_A 96 QSYYRSANGAILAYDITKRSSFL-SVPHWIEDVRK-----YAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCA 169 (201)
T ss_dssp HHHHTTCSEEEEEEETTBHHHHH-THHHHHHHHHH-----HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEE
T ss_pred HHHHhhCCEEEEEEECCCHHHHH-HHHHHHHHHHH-----hcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEE
Confidence 55678899998866543221110 00111222221 123568999999999986432222 222333333222 46
Q ss_pred CCCCCccCCCchhhHHHHHhhcC
Q 004126 156 PKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
...|+..+.+++++|+.....++
T Consensus 170 ~~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 170 IETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 78899999999999998776553
No 107
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.00 E-value=1.3e-09 Score=106.85 Aligned_cols=158 Identities=9% Similarity=-0.032 Sum_probs=92.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.|..|.... .+.+|........... ...+.++||||.... +.. ...
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~---------~~~ 76 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVNKKFSNQY----KATIGADFLTKEVMVDDRLVTMQIWDTAGQERF-QSL---------GVA 76 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCSSC----CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGG-SCS---------CCG
T ss_pred EEEECcCCCCHHHHHHHHHcCCCCCCC----CCcccceEEEEEEEECCEEEEEEEEeCCCcHHH-HHh---------HHH
Confidence 789999999999999999999886421 2222233333322222 347899999996522 211 112
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC---CCCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS---PRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSV 155 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~---~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i 155 (772)
.+..+|++|+.+...+.. ...-+....+....... ....|+++|+||.|+.+.+...+.+.+..... ...+
T Consensus 77 ~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPN-----TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPY 151 (207)
T ss_dssp GGTTCSEEEEEEETTCHH-----HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCE
T ss_pred HHhCCcEEEEEEECCCHH-----HHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceE
Confidence 356889998766443211 11111111111111111 14689999999999864333223333332212 1235
Q ss_pred CCCCCccCCCchhhHHHHHhhcC
Q 004126 156 PKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
...|+..+.+++++|+.....++
T Consensus 152 ~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 152 FETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 67899999999999998877664
No 108
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.99 E-value=1.5e-09 Score=106.46 Aligned_cols=154 Identities=16% Similarity=0.050 Sum_probs=92.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|||||||+|+|.+.+|... ..|.|............+.++||||...- +. .....+
T Consensus 32 i~v~G~~~vGKSsLi~~l~~~~~~~~-------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~---------~~~~~~ 94 (192)
T 2b6h_A 32 ILMVGLDAAGKTTILYKLKLGEIVTT-------IPTIGFNVETVEYKNICFTVWDVGGQDKI-RP---------LWRHYF 94 (192)
T ss_dssp EEEEESTTSSHHHHHHHHCSSCCEEE-------EEETTEEEEEEEETTEEEEEEECC------CT---------THHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhCCcccc-------CCcCceeEEEEEECCEEEEEEECCCCHhH-HH---------HHHHHh
Confidence 78999999999999999999887632 23666555445556678999999998521 11 122345
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh-----cCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD-----SVP 156 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~-----~i~ 156 (772)
..+|++|+.+...+.. ...-+...+...+......+.|+++|+||.|+.+....+ .+.+.+...+. .+.
T Consensus 95 ~~~d~iilv~D~~~~~-----s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~-~i~~~~~~~~~~~~~~~~~ 168 (192)
T 2b6h_A 95 QNTQGLIFVVDSNDRE-----RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVS-ELTDKLGLQHLRSRTWYVQ 168 (192)
T ss_dssp HTCCEEEEEEETTCGG-----GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH-HHHHHTTGGGCSSCCEEEE
T ss_pred ccCCEEEEEEECCCHH-----HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHH-HHHHHhCcccccCCceEEE
Confidence 7899998866543321 111111111111111111478999999999986543322 22222211110 256
Q ss_pred CCCCccCCCchhhHHHHHhhcC
Q 004126 157 KPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
..|+..+.+++++|+.....+.
T Consensus 169 ~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 169 ATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp ECBTTTTBTHHHHHHHHHHHTT
T ss_pred ECcCCCcCCHHHHHHHHHHHHh
Confidence 7899999999999998776553
No 109
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.99 E-value=2.2e-09 Score=111.70 Aligned_cols=127 Identities=14% Similarity=0.045 Sum_probs=80.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH-H
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF-A 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alf-A 80 (772)
|.++|.+|+|||||+|+|+|..+..++. .+.||+.............+.++||||......- ...+...+..+ .
T Consensus 42 I~vvG~~g~GKSSLin~l~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~--~~~~~~~i~~~~~ 116 (270)
T 1h65_A 42 ILVMGKGGVGKSSTVNSIIGERVVSISP---FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI--NDMALNIIKSFLL 116 (270)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCCSCCCS---SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE--CHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCCCcccccC---CCCcceeeEEEEEeeCCeEEEEEECCCCCCCccc--hHHHHHHHHHHhh
Confidence 6899999999999999999999876663 4567776665555556678999999998633211 12333333222 1
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC-CCccEEEEEeCCCCCChh
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTPLE 138 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~-~k~~llfVIrd~d~t~~e 138 (772)
...+|++|+.+.. +..+.......+++.+.+ .|+. ...|+++|+||+|..+.+
T Consensus 117 ~~~~d~il~v~~~-d~~~~~~~~~~~~~~l~~----~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 117 DKTIDVLLYVDRL-DAYRVDNLDKLVAKAITD----SFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TCEECEEEEEEES-SCCCCCHHHHHHHHHHHH----HHCGGGGGGEEEEEECCSCCCGG
T ss_pred cCCCCEEEEEEeC-CCCcCCHHHHHHHHHHHH----HhCcccccCEEEEEECcccCCcC
Confidence 2368999876433 212222222233443333 3332 126899999999987654
No 110
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.99 E-value=1e-09 Score=105.90 Aligned_cols=150 Identities=12% Similarity=0.064 Sum_probs=90.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|+|.+|....+. -|.-.......+..+.++||||..... . .....+
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~~~~~~~t-------~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~---------~~~~~~ 86 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSMNEVVHTSPT-------IGSNVEEIVINNTRFLMWDIGGQESLR-S---------SWNTYY 86 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHTTSCEEEECC-------SSSSCEEEEETTEEEEEEEESSSGGGT-C---------GGGGGG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCccCCc-------CceeeEEEEECCEEEEEEECCCCHhHH-H---------HHHHHh
Confidence 78999999999999999999999655432 122122222345789999999985211 1 112335
Q ss_pred hcccEEEEeeccccccccccCCHHHH-HHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHh-h----cC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLL-KTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-D----SV 155 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lL-ktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-~----~i 155 (772)
..+|++|+.+...+.. ...-+ +.+.+ .++.......|+++|+||.|+.+....+ .+.+.+...+ . .+
T Consensus 87 ~~~d~ii~v~D~~~~~-----s~~~~~~~~~~-~~~~~~~~~~piilv~NK~Dl~~~~~~~-~i~~~~~~~~~~~~~~~~ 159 (181)
T 2h17_A 87 TNTEFVIVVVDSTDRE-----RISVTREELYK-MLAHEDLRKAGLLIFANKQDVKECMTVA-EISQFLKLTSIKDHQWHI 159 (181)
T ss_dssp TTCCEEEEEEETTCTT-----THHHHHHHHHH-HHTCGGGTTCEEEEEEECTTSTTCCCHH-HHHHHTTGGGCCSSCEEE
T ss_pred ccCCEEEEEEECCCHH-----HHHHHHHHHHH-HHhChhhCCCeEEEEEECCCcccCCCHH-HHHHHhCcccccCCceEE
Confidence 7899998866543321 11111 11211 1111112578999999999985432222 2222221111 0 35
Q ss_pred CCCCCccCCCchhhHHHHHh
Q 004126 156 PKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~ 175 (772)
...|+..+.+++++|+....
T Consensus 160 ~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 160 QACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp EECBTTTTBTHHHHHHHHHT
T ss_pred EEccCCCCcCHHHHHHHHHh
Confidence 67899999999999987654
No 111
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.99 E-value=2.3e-09 Score=108.31 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=88.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|||.+|+|||||+|++.|.+..+.+. .++|+......... ....+++++||+|..+.+ .+ ....
T Consensus 40 VvlvG~~~vGKSSLl~r~~~~~~~~~~~---~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~------~~---l~~~ 107 (211)
T 2g3y_A 40 VVLIGEQGVGKSTLANIFAGVHDSMDSD---CEVLGEDTYERTLMVDGESATIILLDMWENKGEN------EW---LHDH 107 (211)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCCTTCCC------CCTTEEEEEEEETTEEEEEEEECCTTTTHHH------HH---HHHC
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCc---CCccceeeEEEEEEECCeeeEEEEeecCCCcchh------hh---HHHH
Confidence 7899999999999999999987766542 34454443322222 223467899999976311 11 1222
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh-cCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD-SVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~-~i~kp 158 (772)
....+|++|+.....+.. ...-++...+...++......|+++|.||+|+.....+.....+.+...+. .+...
T Consensus 108 ~~~~a~~~ilVydvt~~~-----sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~ 182 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRA-----SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIET 182 (211)
T ss_dssp CCCCCSEEEEEEETTCHH-----HHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred HHhhCCEEEEEEECCCHH-----HHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEE
Confidence 234566665544322211 111111111111111112468999999999985433222111111111222 46678
Q ss_pred CCccCCCchhhHHHHHhhc
Q 004126 159 QAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~L 177 (772)
||..+.+++++|+.....+
T Consensus 183 SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 183 SAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999998876544
No 112
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.99 E-value=5e-10 Score=121.80 Aligned_cols=149 Identities=9% Similarity=0.081 Sum_probs=85.1
Q ss_pred CEEEeCCCCCChHHHHhHHhC------CCeeeecCCCCCCCCc-------------------------------------
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG------TNFREMDAFKGRSQTT------------------------------------- 37 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG------tkfsims~~~~r~QTT------------------------------------- 37 (772)
+|+|+|+||+|||||||+|.| .++.|+.. .++|+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~---dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV---DPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC---CC----------------CCSTTCTTEEEECC---------C
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee---cCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 489999999999999999997 56666652 23332
Q ss_pred ccceeeEe--cCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHH
Q 004126 38 KGIWMARC--AGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMM 115 (772)
Q Consensus 38 rGiw~~i~--~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl 115 (772)
|...-++. ...+.+++|+||+|+... .+ .....+|++++.+.. +. +... +.+..
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~-------~~------~l~~~~d~vl~V~d~---~~--~~~~---~~i~~--- 208 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS-------EF------AVADMVDMFVLLLPP---AG--GDEL---QGIKR--- 208 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C-------HH------HHHTTCSEEEEEECC---C------------------
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh-------hh------hHHhhCCEEEEEEcC---Cc--chhH---HHhHH---
Confidence 22211111 124578999999998611 11 114689988765543 21 1111 11111
Q ss_pred hhcCCCCccEEEEEeCCCCCChhchHH---HHHHHHH------HHhh-cCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 116 RLFSPRKTTLMFVIRDKTRTPLENLEP---VLREDIQ------KIWD-SVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 116 ~lf~~~k~~llfVIrd~d~t~~e~l~~---~l~~~l~------~iw~-~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
.+ ...+.++|+||+|..+.+.... .+...+. ..|. .+...|+..+.+++++++.+...+++
T Consensus 209 ~i---l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 209 GI---IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp -----CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HH---HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 11 1346789999999865443222 2222221 1232 45678999999999999988776653
No 113
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.98 E-value=1.2e-09 Score=107.94 Aligned_cols=152 Identities=16% Similarity=-0.009 Sum_probs=84.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|.+|+|||||+|+|.|.+|....+ |.|.-.+.....+.++.++||||.. .-+. .....+
T Consensus 28 i~lvG~~~vGKSsLi~~l~~~~~~~~~~-------t~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~---------~~~~~~ 90 (198)
T 1f6b_A 28 LVFLGLDNAGKTTLLHMLKDDRLGQHVP-------TLHPTSEELTIAGMTFTTFDLGGHI-QARR---------VWKNYL 90 (198)
T ss_dssp EEEEEETTSSHHHHHHHHSCC------C-------CCCCSCEEEEETTEEEEEEEECC-----CC---------GGGGGG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCccCC-------CCCceeEEEEECCEEEEEEECCCcH-hhHH---------HHHHHH
Confidence 7899999999999999999998865432 2222233334445789999999965 2221 112235
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH----------
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI---------- 151 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i---------- 151 (772)
..+|++|+.+...+.. ...-+....+..++.-.....|+++|.||+|+..... .+.+.+.+...
T Consensus 91 ~~~d~~i~v~D~~~~~-----s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T 1f6b_A 91 PAINGIVFLVDCADHE-----RLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS-EERLREMFGLYGQTTGKGSVS 164 (198)
T ss_dssp GGCSEEEEEEETTCGG-----GHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC-HHHHHHHHTCTTTCCCSSCCC
T ss_pred hcCCEEEEEEECCCHH-----HHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCC-HHHHHHHhCcccccccccccc
Confidence 6899998866543321 1111111111111111125789999999999754111 12223322210
Q ss_pred ------h-hcCCCCCCccCCCchhhHHHHHhh
Q 004126 152 ------W-DSVPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 152 ------w-~~i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
+ ..+.+.|+..+.+++++|+.....
T Consensus 165 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 165 LKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 0 135567899999999999876544
No 114
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.98 E-value=1.5e-09 Score=105.24 Aligned_cols=154 Identities=15% Similarity=0.080 Sum_probs=93.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|++..|.... .|.|.-..........+.++||||......- . . ..+
T Consensus 25 i~v~G~~~~GKssli~~l~~~~~~~~~-------~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-~-~--------~~~ 87 (189)
T 2x77_A 25 VLMLGLDNAGKTSILYRLHLGDVVTTV-------PTVGVNLETLQYKNISFEVWDLGGQTGVRPY-W-R--------CYF 87 (189)
T ss_dssp EEEEEETTSSHHHHHHHTCCSCCEEEC-------SSTTCCEEEEEETTEEEEEEEECCSSSSCCC-C-S--------SSS
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCcC-------CCCceEEEEEEECCEEEEEEECCCCHhHHHH-H-H--------HHh
Confidence 789999999999999999988876422 2344433344445678999999998632211 1 1 234
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHh-----hcCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-----DSVP 156 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-----~~i~ 156 (772)
..+|++|+.+...+..... .+...+.+ .++.......|+++|+||.|+.+....++ +.+.+..-+ -.+.
T Consensus 88 ~~~d~ii~v~d~~~~~s~~----~~~~~~~~-~~~~~~~~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~ 161 (189)
T 2x77_A 88 SDTDAVIYVVDSTDRDRMG----VAKHELYA-LLDEDELRKSLLLIFANKQDLPDAASEAE-IAEQLGVSSIMNRTWTIV 161 (189)
T ss_dssp TTCCEEEEEEETTCCTTHH----HHHHHHHH-HHTCSTTTTCEEEEEEECTTSTTCCCHHH-HHHHTTGGGCCSSCEEEE
T ss_pred hcCCEEEEEEeCCCHHHHH----HHHHHHHH-HHhhhhcCCCeEEEEEECCCCcCCCCHHH-HHHHhChhhccCCceEEE
Confidence 6899998866543322111 11111111 11111125789999999999865433221 222221101 0356
Q ss_pred CCCCccCCCchhhHHHHHhhcC
Q 004126 157 KPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
+.|+..+.+++++|+.....++
T Consensus 162 ~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 162 KSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EccCCCccCHHHHHHHHHHHHH
Confidence 7889999999999998776654
No 115
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.98 E-value=2.6e-09 Score=105.04 Aligned_cols=157 Identities=14% Similarity=-0.025 Sum_probs=93.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.|..|.... .+.++........... ...+.++||||.... +.. ...
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~---------~~~ 76 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFSDDTYTNDY----ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF-RTI---------TSS 76 (206)
T ss_dssp EEEEESTTSSHHHHHHHHHHCCCCTTC----CCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT-TCC---------CGG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCC----CCcccceeEEEEEEECCEEEEEEEEeCCChHHH-HHH---------HHH
Confidence 689999999999999999998886422 1222222222222222 247899999996522 211 123
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+.. ...-++...+. +.-+.....|+++|+||.|+.+...+. +...+......-.+...
T Consensus 77 ~~~~~d~vilv~d~~~~~-----s~~~~~~~~~~-i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQE-----SFNGVKMWLQE-IDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLET 150 (206)
T ss_dssp GGTTCSEEEEEEETTCHH-----HHHHHHHHHHH-HHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEC
T ss_pred hccCCCEEEEEEECcCHH-----HHHHHHHHHHH-HHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEE
Confidence 457899998766443211 11112222211 111223578999999999986543332 22222222222246678
Q ss_pred CCccCCCchhhHHHHHhhcC
Q 004126 159 QAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lp 178 (772)
|+..+.+++++|+.....++
T Consensus 151 Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 151 SALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998877664
No 116
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.98 E-value=5.6e-10 Score=110.51 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=88.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+..|.... ..||...+....... ...+.++||||..... . ....
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~---------~~~~ 92 (207)
T 2fv8_A 28 LVVVGDGACGKTCLLIVFSKDEFPEVY-----VPTVFENYVADIEVDGKQVELALWDTAGQEDYD-R---------LRPL 92 (207)
T ss_dssp EEEEECTTSSHHHHHHHHHHSSCC------------CCEEEEEEEETTEEEEEEEEECTTCTTCT-T---------TGGG
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCcC-----CCcccceEEEEEEECCEEEEEEEEECCCcHHHH-H---------HHHh
Confidence 789999999999999999998886422 223322222222222 2478899999965211 1 1123
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHH-------------HH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL-------------RE 146 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l-------------~~ 146 (772)
.+..+|++|+.+...+..........+++.+.+ . ....|+++|+||.|+.+.+...+.+ .+
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 166 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKH-----F-CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA 166 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHH-----H-STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----h-CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHH
Confidence 457899998765432211000000111122211 1 1478899999999976443222111 11
Q ss_pred HHHHHhh-cCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 147 DIQKIWD-SVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 147 ~l~~iw~-~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
....+.. .+...|+..+.+++++|+.....+.+.
T Consensus 167 ~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 167 MAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred HHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 1111111 456789999999999999887665443
No 117
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.97 E-value=9.2e-10 Score=108.08 Aligned_cols=159 Identities=13% Similarity=-0.016 Sum_probs=87.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|+|..|..... +...+|..............+.++||||.. +. +......+
T Consensus 31 i~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---~~-------~~~~~~~~ 98 (199)
T 2p5s_A 31 IVLAGDAAVGKSSFLMRLCKNEFRENIS--ATLGVDFQMKTLIVDGERTVLQLWDTAGQE---RF-------RSIAKSYF 98 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCT---TC-------HHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHhCCCCccCC--CCccceeEEEEEEECCEEEEEEEEECCCCc---ch-------hhhHHHHH
Confidence 6899999999999999999988753210 111112222112222233568899999954 11 12344556
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh------hchH-HHHHHHHHHHhhc
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL------ENLE-PVLREDIQKIWDS 154 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~------e~l~-~~l~~~l~~iw~~ 154 (772)
..+|++|+.+...+.. ...-++...+. +.-......|+++|+||.|+.+. ..+. +...+........
T Consensus 99 ~~~d~iilv~d~~~~~-----s~~~~~~~~~~-i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~ 172 (199)
T 2p5s_A 99 RKADGVLLLYDVTCEK-----SFLNIREWVDM-IEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL 172 (199)
T ss_dssp HHCSEEEEEEETTCHH-----HHHTHHHHHHH-HHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE
T ss_pred hhCCEEEEEEECCChH-----HHHHHHHHHHH-HHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe
Confidence 7899998866543211 11111111111 11112246899999999997421 1221 2222222222224
Q ss_pred CCCCCCccCCCchhhHHHHHhhcC
Q 004126 155 VPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 155 i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
+...|+..+.+++++|+.....+.
T Consensus 173 ~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 173 FCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHH
Confidence 667899999999999988766543
No 118
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.97 E-value=5e-10 Score=107.22 Aligned_cols=158 Identities=14% Similarity=0.028 Sum_probs=91.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|.+|+|||||+|+|.+..|.- ....|+...+...... ....+.++||||.... +. ....
T Consensus 8 i~~~G~~~~GKssl~~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~---------~~~~ 72 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTNAFPG-----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-DR---------LRPL 72 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSCCS-----SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG-TT---------TGGG
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC-----CcCCcccceeEEEEEECCEEEEEEEEECCCCHhH-HH---------HHHH
Confidence 6899999999999999999887742 2234554433222222 2346779999998522 11 1122
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-------------HHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-------------PVLRE 146 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-------------~~l~~ 146 (772)
.+..+|++|+.+...+..........++..+.+ .. ...|+++|+||+|+.+..... +...+
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRH-----HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 146 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----HS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHH-----hC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH
Confidence 457899998766443211111000011222221 11 378999999999875432111 11111
Q ss_pred HHHHHh-hcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 147 DIQKIW-DSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 147 ~l~~iw-~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
....+. ..+.+.|+..+.+++++|+.....+++.
T Consensus 147 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 147 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred HHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 111111 1466789999999999999988877654
No 119
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.97 E-value=3.3e-10 Score=108.34 Aligned_cols=157 Identities=11% Similarity=0.067 Sum_probs=84.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|++.+.+|.. ....|+...+..... .....+.++||||...- +. ....
T Consensus 11 i~v~G~~~~GKssl~~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~---------~~~~ 75 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYTSNTFPT-----DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDY-NR---------LRPL 75 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCC---------------CBCCCC-------CEEECCCC-CTT-TT---------TGGG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC-----CCCCeeeeeEEEEEEECCEEEEEEEEECCCChhh-hh---------hHHh
Confidence 6899999999999999999988753 223444333221111 12346679999996521 11 1123
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhch-----------HHHHHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL-----------EPVLREDI 148 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l-----------~~~l~~~l 148 (772)
.+..+|++|+.+...+..........+++.+.+ .. .+.|+++|+||+|+.+.... .+...+..
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 149 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKH-----YA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----HC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----hC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence 457899998766543211100000011121211 11 37899999999986543221 11222222
Q ss_pred HHHh-hcCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 149 QKIW-DSVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 149 ~~iw-~~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
..+. ..+.+.|+..+.+++++|+.....+.+
T Consensus 150 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 150 KLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp HHHTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHcCCCEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 2222 146778999999999999988766543
No 120
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.97 E-value=1e-09 Score=107.56 Aligned_cols=152 Identities=13% Similarity=-0.014 Sum_probs=91.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+++|.+|+|||||+|+|.+.+|.... +|.|...+.....+..+.++||||... .+. .....+
T Consensus 26 i~~vG~~~vGKSsli~~l~~~~~~~~~-------~t~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~---------~~~~~~ 88 (190)
T 1m2o_B 26 LLFLGLDNAGKTTLLHMLKNDRLATLQ-------PTWHPTSEELAIGNIKFTTFDLGGHIQ-ARR---------LWKDYF 88 (190)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCCCC-------CCCSCEEEEEEETTEEEEEEECCCSGG-GTT---------SGGGGC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCccc-------cCCCCCeEEEEECCEEEEEEECCCCHH-HHH---------HHHHHH
Confidence 789999999999999999998886433 344444444444567899999999862 221 111235
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH----------
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI---------- 151 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i---------- 151 (772)
..+|++|+.+...+.. ...-++......++.....+.|+++|.||+|+.+... .+.+.+.+...
T Consensus 89 ~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPE-----RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS-EAELRSALGLLNTTGSQRIEG 162 (190)
T ss_dssp TTCCEEEEEEETTCGG-----GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTCSSCCC---CCS
T ss_pred hcCCEEEEEEECCChH-----HHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCC-HHHHHHHhCCccccccccccc
Confidence 6899998866543322 1111111111111111125789999999999754211 12222222110
Q ss_pred -h-hcCCCCCCccCCCchhhHHHHHhh
Q 004126 152 -W-DSVPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 152 -w-~~i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
+ -.+.+.|+..+.+++++|+.....
T Consensus 163 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 163 QRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 0 125567899999999999876543
No 121
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.97 E-value=7.1e-10 Score=109.62 Aligned_cols=158 Identities=11% Similarity=0.040 Sum_probs=94.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+.+|.. ....|+...+.......+ ..+.++||||...- +. ....
T Consensus 12 i~i~G~~~~GKTsli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~---------~~~~ 76 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSNKFPT-----DYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDY-SR---------LRPL 76 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCS-----SCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCC-CC-----------CG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCc-----cCCCccceeEEEEEEECCEEEEEEEEECCCcHHH-HH---------HHHh
Confidence 6899999999999999999988742 234555544433333322 47899999998521 11 1123
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhch---------HHHHHHHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL---------EPVLREDIQK 150 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l---------~~~l~~~l~~ 150 (772)
.+..+|++|+.+...+..........++..+.+ .. ...|+++|+||.|+.+.... .....+....
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~-----~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRR-----FA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ 150 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----HC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----hC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH
Confidence 467899998866443211000000011111111 11 37899999999986433221 1222222222
Q ss_pred Hh-hcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 151 IW-DSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 151 iw-~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
+- ..+...|+..+.+++++|+.....+...
T Consensus 151 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 151 IGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred cCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 22 2467889999999999999888766543
No 122
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.97 E-value=9.2e-10 Score=107.70 Aligned_cols=156 Identities=15% Similarity=0.060 Sum_probs=88.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+..|.. ....||...+.......+ ..+.++||||...- +. . ...
T Consensus 23 i~~~G~~~~GKssl~~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~-~--------~~~ 87 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYTTNGYPT-----EYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF-DK-L--------RPL 87 (201)
T ss_dssp EEEECSTTSSHHHHHHHHHC-------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTC-SS-S--------GGG
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC-----CCCCcccceeEEEEEECCEEEEEEEEECCCCHHH-HH-H--------hHh
Confidence 6899999999999999999988642 345666655544433333 35669999998622 11 1 112
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh------------chH-HHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE------------NLE-PVLRE 146 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e------------~l~-~~l~~ 146 (772)
.+..+|++|+.+...+..........++..+.+ .. ...|+++|.||+|+.+.. .+. +...+
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 161 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-----HC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL 161 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----HC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHH-----hC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH
Confidence 457899998766543221111000011111211 11 378999999999975421 111 12222
Q ss_pred HHHHHhh-cCCCCCCccCCCchhhHHHHHhhcC
Q 004126 147 DIQKIWD-SVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 147 ~l~~iw~-~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
....+.. .+...|+..+.+++++|+.....+.
T Consensus 162 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 162 LAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 2222221 4678899999999999998766543
No 123
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.95 E-value=3.2e-09 Score=118.83 Aligned_cols=152 Identities=13% Similarity=0.056 Sum_probs=91.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCC---------------------CCCCC------CcccceeeEecCCCCcEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAF---------------------KGRSQ------TTKGIWMARCAGIEPCTLI 54 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~---------------------~~r~Q------TTrGiw~~i~~~~~~qil~ 54 (772)
|+|+|.+|+|||||+|+|++..-.+.... ..+.+ +|.++-.......+.++.|
T Consensus 20 i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~i 99 (439)
T 3j2k_7 20 VVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTI 99 (439)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEE
Confidence 68999999999999999976532221100 01222 3444444445556789999
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccc-----cCCHHHHHHHHHHHHhhcCCCCcc-EEEE
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQ-----AANKPLLKTVFQVMMRLFSPRKTT-LMFV 128 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~-----~~n~~lLktv~evnl~lf~~~k~~-llfV 128 (772)
+||||.. +| .+....++..+|++|+.+...+--.+. +.....+..+.. ...| +++|
T Consensus 100 iDTPGh~---------~f-~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--------~~v~~iIvv 161 (439)
T 3j2k_7 100 LDAPGHK---------SF-VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--------AGVKHLIVL 161 (439)
T ss_pred EECCChH---------HH-HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--------cCCCeEEEE
Confidence 9999942 23 345666788999999877653311000 122222222222 3344 9999
Q ss_pred EeCCCCCChh-------chHHHHHHHHHHH-hh-----cCCCCCCccCCCchhhHH
Q 004126 129 IRDKTRTPLE-------NLEPVLREDIQKI-WD-----SVPKPQAHMETPLSEFFN 171 (772)
Q Consensus 129 Ird~d~t~~e-------~l~~~l~~~l~~i-w~-----~i~kpsa~~~~~l~dlf~ 171 (772)
+||+|+.+.+ .+.+.+.+.+..+ +. .+.+.|+..+.++.++++
T Consensus 162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 162 INKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9999985421 2223333333222 21 367889999999999765
No 124
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.95 E-value=1.9e-09 Score=102.54 Aligned_cols=160 Identities=9% Similarity=0.028 Sum_probs=86.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC---CCCcEEEEecCCCCCcCCCCCccHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG---IEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~---~~~qil~lDteG~~s~er~e~~~~fe~k~al 78 (772)
|.|+|.+|+|||||+|+|.|..|.... .+.++.......... ....+.++||||.... + ....
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~---------~~~~ 76 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVNDKYSQQY----KATIGADFLTKEVTVDGDKVATMQVWDTAGQERF-Q---------SLGV 76 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCCCTTC-------CCCSCEEEEECCSSSCCEEEEEECCC--------------------
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCccc----CCccceEEEEEEEEEcCCcEEEEEEEECCCChHh-h---------hhhH
Confidence 689999999999999999998876321 122222233333322 2347899999995311 1 1223
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc-h-HHHHHHHHHHHh-hcC
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN-L-EPVLREDIQKIW-DSV 155 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~-l-~~~l~~~l~~iw-~~i 155 (772)
..+..+|++|+.+...+..... .-...+..+... .........|+++|+||.|+.+.+. + .+.+.+.....+ ..+
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~-~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFE-NIKSWRDEFLVH-ANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHH-THHHHHHHHHHH-HCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred HHhhcCCEEEEEEECCChHHHH-HHHHHHHHHHHH-hcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE
Confidence 3467899998766443321100 001111222110 1111125789999999999853322 2 122222222122 235
Q ss_pred CCCCCccCCCchhhHHHHHhhc
Q 004126 156 PKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~L 177 (772)
...|+..+.+++++|+.....+
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 5778999999999998876543
No 125
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.95 E-value=2e-09 Score=105.01 Aligned_cols=168 Identities=13% Similarity=0.111 Sum_probs=69.3
Q ss_pred EEEeCCCCCChHHHHhHHhCC--CeeeecCCCCCCCCcc-cceeeEecCC----CCcEEEEecCCCCCcCCCCCccHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT--NFREMDAFKGRSQTTK-GIWMARCAGI----EPCTLIMDLEGTDGRERGEDDTAFEK 74 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt--kfsims~~~~r~QTTr-Giw~~i~~~~----~~qil~lDteG~~s~er~e~~~~fe~ 74 (772)
|.|+|.+|+|||||+|+|.|. .|. + ....||. .......... ...+.++||||.. .+ +
T Consensus 23 i~v~G~~~~GKssli~~l~~~~~~~~--~---~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~-~ 87 (208)
T 2yc2_C 23 VAVVGEATVGKSALISMFTSKGSKFL--K---DYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD---------LY-K 87 (208)
T ss_dssp EEEC---------------------------------------CEEEECTTSSEEEEEEEEETTTTH---------HH-H
T ss_pred EEEECCCCCCHHHHHHHHHhCCCccc--C---CCCCccceEEEEEEEEECCcccEEEEEEEECCCcH---------HH-H
Confidence 689999999999999999998 554 2 1222332 2333333333 3479999999974 11 2
Q ss_pred HHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCCC-hhchH-HHHHHHHH
Q 004126 75 QSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRTP-LENLE-PVLREDIQ 149 (772)
Q Consensus 75 k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t~-~e~l~-~~l~~~l~ 149 (772)
......+..+|++|+.+...+.. ...-++...+.... ... ...|+++|+||+|+.+ ...+. +.+.+...
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~i~~-~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~ 161 (208)
T 2yc2_C 88 EQISQYWNGVYYAILVFDVSSME-----SFESCKAWFELLKS-ARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWAT 161 (208)
T ss_dssp HHHSTTCCCCCEEEEEEETTCHH-----HHHHHHHHHHHHHH-HCSCTTSCCEEEEEEECC-------CCCHHHHHHHHH
T ss_pred HHHHHHHhhCcEEEEEEECCCHH-----HHHHHHHHHHHHHH-hhcccccCCcEEEEEECcccchhhccCCHHHHHHHHH
Confidence 23445567899998766442211 11112222211111 122 4789999999999865 33332 22333333
Q ss_pred HHhhcCCCCCCcc-CCCchhhHHHHHhhcCCCccchhHHHHHHHHHHh
Q 004126 150 KIWDSVPKPQAHM-ETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQ 196 (772)
Q Consensus 150 ~iw~~i~kpsa~~-~~~l~dlf~~~~~~Lph~~~~~~~F~~~v~~Lr~ 196 (772)
.+--.+...|+.. +.+++++|+.....+. +.+.+.++.|+.
T Consensus 162 ~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~------~~~~~~~~~~~~ 203 (208)
T 2yc2_C 162 TNTLDFFDVSANPPGKDADAPFLSIATTFY------RNYEDKVAAFQD 203 (208)
T ss_dssp HTTCEEEECCC-------CHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred HcCCEEEEeccCCCCcCHHHHHHHHHHHHH------HHHHhhHHHHHH
Confidence 3222467789999 9999999998877653 334455555543
No 126
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.95 E-value=1.3e-09 Score=122.92 Aligned_cols=156 Identities=12% Similarity=-0.004 Sum_probs=100.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|||.+|+|||||+|+|.|.+|.. ..+|.|.-.+........+.++||+|...-. ......+
T Consensus 325 i~lvG~~nvGKSsLl~~l~~~~~~~-------~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~~ 387 (497)
T 3lvq_E 325 ILMLGLDAAGKTTILYKLKLGQSVT-------TIPTVGFNVETVTYKNVKFNVWDVGGQDKIR----------PLWRHYY 387 (497)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSCCC-------CCCCSSEEEEEEESSSCEEEEEEECCCGGGS----------GGGGGGG
T ss_pred EEEEcCCCCCHHHHHHHHhcCCCCC-------cCCccceeEEEEEeCCEEEEEEECCCcHHHH----------HHHHHHh
Confidence 6899999999999999999988653 2358888888777778899999999964211 1234457
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH-----hhcCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-----WDSVP 156 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-----w~~i~ 156 (772)
..+|++|+.+...+.. ...-+...+.-.++......+|+++|+||+|+.+..... .+.+.+..- ...+.
T Consensus 388 ~~ad~~i~V~D~~~~~-----s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 461 (497)
T 3lvq_E 388 TGTQGLIFVVDCADRD-----RIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH-EIQEKLGLTRIRDRNWYVQ 461 (497)
T ss_dssp TTCCEEEEEEETTCGG-----GHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHH-HHHHHTTCTTCCSSCEEEE
T ss_pred ccCCEEEEEEECcchh-----HHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHH-HHHHHhchhhhhcCCeEEE
Confidence 7899998866543322 111121111111111111578999999999986433222 122222110 01266
Q ss_pred CCCCccCCCchhhHHHHHhhcCCC
Q 004126 157 KPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
..|+.++.+++++|+.+...+..+
T Consensus 462 ~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 462 PSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp ECBTTTTBTHHHHHHHHHHHCC--
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc
Confidence 789999999999999988777544
No 127
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.94 E-value=2.3e-09 Score=106.71 Aligned_cols=155 Identities=12% Similarity=0.025 Sum_probs=92.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCccc--ceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKG--IWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrG--iw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|+|+|.+|+|||||+|+|.+..|... ..+|.| ......... ..++.++||||.. + | +...
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---~------~-~~~~ 92 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQGLFPPG------QGATIGVDFMIKTVEINGEKVKLQIWDTAGQE---R------F-RSIT 92 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSCCTT------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSG---G------G-HHHH
T ss_pred EEEECcCCCCHHHHHHHHHhCCCCCC------CCCccceeEEEEEEEECCEEEEEEEEECCCcH---H------H-HHHH
Confidence 68999999999999999999888631 223322 222222222 2478999999953 1 1 2344
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~ 156 (772)
...+..+|++|+.+...+.. ...-++...+. +.-....+.|+++|.||+|+.+...+. +...+......-.+.
T Consensus 93 ~~~~~~~d~~i~v~D~~~~~-----s~~~~~~~~~~-i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 166 (201)
T 2ew1_A 93 QSYYRSANALILTYDITCEE-----SFRCLPEWLRE-IEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYL 166 (201)
T ss_dssp GGGSTTCSEEEEEEETTCHH-----HHHTHHHHHHH-HHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEE
T ss_pred HHHHhcCCEEEEEEECCCHH-----HHHHHHHHHHH-HHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEE
Confidence 55678899998866443211 11111111111 111223578999999999975433322 222222222222466
Q ss_pred CCCCccCCCchhhHHHHHhhcC
Q 004126 157 KPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
+.|+..+.+++++|+.....+.
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 167 ETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999988765543
No 128
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.94 E-value=1e-09 Score=108.71 Aligned_cols=154 Identities=14% Similarity=0.034 Sum_probs=89.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCC--cEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEP--CTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~--qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|++.+..|.- ....||...........+. .+.++||||...-. . ....
T Consensus 33 i~vvG~~~~GKSsLi~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~---------~~~~ 97 (204)
T 4gzl_A 33 CVVVGDGAVGKTCLLISYTTNAFPG-----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-R---------LRPL 97 (204)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCC------CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT-T---------TGGG
T ss_pred EEEECcCCCCHHHHHHHHHhCCCCC-----CcCCeecceeEEEEEECCEEEEEEEEECCCchhhH-H---------HHHH
Confidence 6899999999999999999877742 2344565544443333333 45599999985211 1 1122
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-------------HHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-------------PVLRE 146 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-------------~~l~~ 146 (772)
.+..+|++|+.+...+..........+++.+.+ . ....|+++|+||+|+.+..... +...+
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-----H-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----H-CSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----h-CCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence 467899998866543321111000011112211 1 1478999999999875433211 11111
Q ss_pred HHHHHh-hcCCCCCCccCCCchhhHHHHHhh
Q 004126 147 DIQKIW-DSVPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 147 ~l~~iw-~~i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
....+. ..+.+.|+..+.+++++|+.....
T Consensus 172 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 222221 236678999999999999887653
No 129
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.93 E-value=1.1e-09 Score=105.19 Aligned_cols=157 Identities=8% Similarity=-0.087 Sum_probs=69.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|||||||+|+|.+..|..-. .+.++........... ...+.++||||...- + .....
T Consensus 11 i~v~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~---------~~~~~ 76 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSEDAFNSTF----ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-R---------TITTA 76 (183)
T ss_dssp EEEECCCCC----------------CH----HHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CCT
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCC----CCcccceeEEEEEEECCEEEEEEEEcCCCChhh-h---------hhHHH
Confidence 789999999999999999998875321 1222322222222222 257899999996521 1 11223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhch-HHHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL-EPVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l-~~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+.. ...-++...+. +.-......|+++|.||+|+.+...+ .+.+.+......-.+...
T Consensus 77 ~~~~~d~~i~v~d~~~~~-----s~~~~~~~~~~-i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 150 (183)
T 2fu5_C 77 YYRGAMGIMLVYDITNEK-----SFDNIRNWIRN-IEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMET 150 (183)
T ss_dssp TTTTCSEEEEEEETTCHH-----HHHHHHHHHHH-HHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEEC
T ss_pred HHhcCCEEEEEEECcCHH-----HHHHHHHHHHH-HHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEE
Confidence 456899998766443211 11111111111 11112257899999999998643322 122233333332356788
Q ss_pred CCccCCCchhhHHHHHhhcC
Q 004126 159 QAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lp 178 (772)
|+..+.+++++|+.....+.
T Consensus 151 Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 151 SAKANINVENAFFTLARDIK 170 (183)
T ss_dssp CC---CCHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998766553
No 130
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.93 E-value=7.5e-10 Score=109.06 Aligned_cols=154 Identities=14% Similarity=0.082 Sum_probs=88.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec-CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA-GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~-~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|.|+|.+|+|||||+|+|.+.+|.... .+.++......+.. .....+.++||||...- +. .....
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-~~---------~~~~~ 93 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQFPEVY----VPTVFENYIADIEVDGKQVELALWDTAGQEDY-DR---------LRPLS 93 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSCCSSC----CCSSCCCCEEEEEETTEEEEEEEECCCCSGGG-TT---------TGGGG
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCccc----CCcccceEEEEEEECCEEEEEEEEECCCchhH-HH---------HHHHh
Confidence 689999999999999999998886321 23333333222211 12247889999996421 11 11224
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-------------HHHHHH
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-------------PVLRED 147 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-------------~~l~~~ 147 (772)
+..+|++|+.+...+..........+++.+.+ +. ...|+++|+||+|+.+..... +...+.
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (201)
T 2gco_A 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKH-----FC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM 167 (201)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----HS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-----hC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHH
Confidence 67899998765432211000000011122211 11 378999999999976542211 111222
Q ss_pred HHHHhh-cCCCCCCccCCCchhhHHHHHh
Q 004126 148 IQKIWD-SVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 148 l~~iw~-~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
...+.. .+...|+..+.+++++|+....
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~~l~~~i~~ 196 (201)
T 2gco_A 168 ANRISAFGYLECSAKTKEGVREVFEMATR 196 (201)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHhCCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 222222 4667899999999999987654
No 131
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.93 E-value=6e-10 Score=120.00 Aligned_cols=152 Identities=13% Similarity=0.051 Sum_probs=96.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.+.+|... ..|.++-..........+.|+||||-. +.. ......+
T Consensus 168 I~ivG~~~vGKSsLl~~l~~~~~~~~-------~pT~~~~~~~~~~~~~~l~i~Dt~G~~---~~~-------~~~~~~~ 230 (329)
T 3o47_A 168 ILMVGLDAAGKTTILYKLKLGEIVTT-------IPTIGFNVETVEYKNISFTVWDVGGQD---KIR-------PLWRHYF 230 (329)
T ss_dssp EEEEESTTSSHHHHHHHTCSSCCEEE-------EEETTEEEEEEEETTEEEEEEECC--------C-------CSHHHHH
T ss_pred EEEECCCCccHHHHHHHHhCCCCCCc-------ccccceEEEEEecCcEEEEEEECCCCH---hHH-------HHHHHHh
Confidence 78999999999999999999987531 237777776666677889999999943 111 1123446
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC---CCccEEEEEeCCCCCChhchHHHHHHHHHHHh-----h
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP---RKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-----D 153 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~---~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-----~ 153 (772)
..+|++|+.+...+.. .. ..+.+....+... ...|+++|+||+|+.+....++ +.+.+.... -
T Consensus 231 ~~ad~vilV~D~~~~~-----s~---~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~-i~~~~~~~~~~~~~~ 301 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRE-----RV---NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE-ITDKLGLHSLRHRNW 301 (329)
T ss_dssp TTEEEEEEEEETTCSS-----SH---HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH-HHHHHTCTTCCSSCE
T ss_pred ccCCEEEEEEECCchH-----HH---HHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHH-HHHHhchhhhhcCCC
Confidence 7899998876544322 11 1111111222222 4789999999999865443332 222221111 1
Q ss_pred cCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
.+...|+..+.+++++|+.+...+..
T Consensus 302 ~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 302 YIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 25578999999999999988876653
No 132
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.92 E-value=1.3e-09 Score=107.43 Aligned_cols=156 Identities=13% Similarity=-0.010 Sum_probs=84.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|++.+|.... .+.++.......... ....+.++||||... -+. ....
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-~~~---------~~~~ 93 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIENKFKQDS----NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER-FRS---------VTRS 93 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC----------------CCEEEEEEEETTEEEEEEEECCTTHHH-HSC---------CCHH
T ss_pred EEEECcCCCCHHHHHHHHHhCCCCccC----CCcccceeEEEEEEECCeeeEEEEEcCCCcHh-HHH---------HHHH
Confidence 689999999999999999999887532 121221221122222 235889999999641 111 1234
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+... ..-++...+. +........|+++|+||+|+.+...+. ....+.....--.+.+.
T Consensus 94 ~~~~~d~~i~v~d~~~~~s-----~~~~~~~~~~-~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 167 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRET-----YNSLAAWLTD-ARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 167 (200)
T ss_dssp HHTTCSEEEEEEETTCHHH-----HHTHHHHHHH-HHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred HhccCCEEEEEEECcCHHH-----HHHHHHHHHH-HHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEE
Confidence 4678999988665433211 1111111111 111122578999999999975433222 12222222222235678
Q ss_pred CCccCCCchhhHHHHHhhc
Q 004126 159 QAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~L 177 (772)
|+..+.+++++|+.....+
T Consensus 168 SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 168 SALTGENVEEAFLKCARTI 186 (200)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999998766544
No 133
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.92 E-value=1.4e-09 Score=108.56 Aligned_cols=152 Identities=13% Similarity=0.060 Sum_probs=79.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+.+|... ...|+...+...... ....+.++||||...-. .....
T Consensus 37 i~vvG~~~vGKSsli~~l~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------~~~~~ 101 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADGAFPES-----YTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD----------RLRPL 101 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC------------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred EEEECcCCCCHHHHHHHHHcCCCCCC-----CCCccceeEEEEEEECCEEEEEEEEECCCchhhh----------HHHHH
Confidence 78999999999999999999887532 233443333322222 23478899999964111 11223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCChhchHH-------------HH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTPLENLEP-------------VL 144 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~~e~l~~-------------~l 144 (772)
.+..+|++|+.+...+.. -+..+.+..+.... ..+.|+++|+||+|+.+.....+ ..
T Consensus 102 ~~~~~d~~i~v~d~~~~~--------s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 173 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPN--------SFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG 173 (214)
T ss_dssp ---CEEEEEEEEETTCHH--------HHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH
T ss_pred HhccCCEEEEEEECcCHH--------HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHH
Confidence 456899998765432211 11111111111111 14689999999999765432211 11
Q ss_pred HHHHHHHhh-cCCCCCCccCCCchhhHHHHHhh
Q 004126 145 REDIQKIWD-SVPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 145 ~~~l~~iw~-~i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
.+....+.. .+...|+..+.+++++|+.....
T Consensus 174 ~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 206 (214)
T 2j1l_A 174 QEMARSVGAVAYLECSARLHDNVHAVFQEAAEV 206 (214)
T ss_dssp HHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 222222221 46778999999999999887654
No 134
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.92 E-value=1.8e-08 Score=99.63 Aligned_cols=129 Identities=13% Similarity=0.164 Sum_probs=74.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC---CCcEEEEecCCCCCcCCCCCccHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI---EPCTLIMDLEGTDGRERGEDDTAFEKQSAL 78 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~---~~qil~lDteG~~s~er~e~~~~fe~k~al 78 (772)
|.|+|.+|+|||||+|+|.+..|.. ..+.|+.+... .... ...+.++||||.. .|......
T Consensus 10 i~vvG~~~~GKTsli~~l~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~---------~~~~~~~~ 73 (214)
T 2fh5_B 10 VLFVGLCDSGKTLLFVRLLTGQYRD-----TQTSITDSSAI--YKVNNNRGNSLTLIDLPGHE---------SLRFQLLD 73 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCC-----BCCCCSCEEEE--EECSSTTCCEEEEEECCCCH---------HHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCccc-----ccCCcceeeEE--EEecCCCccEEEEEECCCCh---------hHHHHHHH
Confidence 6899999999999999999988753 12333333322 2222 4679999999975 22222333
Q ss_pred HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHh-hcCCCCccEEEEEeCCCCCCh---hchHHHHHHHHH
Q 004126 79 FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMR-LFSPRKTTLMFVIRDKTRTPL---ENLEPVLREDIQ 149 (772)
Q Consensus 79 fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~-lf~~~k~~llfVIrd~d~t~~---e~l~~~l~~~l~ 149 (772)
..+..+|++|+.+...+. ...-....+.+.+.... .......|+++|+||.|+.+. +.+.+.+.+.+.
T Consensus 74 ~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 74 RFKSSARAVVFVVDSAAF---QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 145 (214)
T ss_dssp HHGGGEEEEEEEEETTTH---HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred HHHhhCCEEEEEEECCCc---CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence 347889999876643221 11111122222221111 112357899999999997543 333344444443
No 135
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.92 E-value=2.9e-09 Score=110.43 Aligned_cols=124 Identities=15% Similarity=0.008 Sum_probs=78.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|.+|+|||||+|+|+|.++..++ ..+.||...........+..+.++||||....... . ..+.+.+ ...+
T Consensus 39 I~lvG~~g~GKSSLin~l~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~-~-~~~~~~i-~~~l 112 (262)
T 3def_A 39 VLVLGKGGVGKSSTVNSLIGEQVVRVS---PFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYV-N-HQALELI-KGFL 112 (262)
T ss_dssp EEEEECTTSSHHHHHHHHHTSCCSCCC---SSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEE-C-HHHHHHH-HHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcccC---CCCCcceeeEEEEEEECCeeEEEEECCCCCCcccc-h-HHHHHHH-HHHH
Confidence 789999999999999999999987665 35677887777766667779999999999743221 1 2333222 1222
Q ss_pred --hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC-CCccEEEEEeCCCCCC
Q 004126 82 --AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTP 136 (772)
Q Consensus 82 --a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~-~k~~llfVIrd~d~t~ 136 (772)
..+|++|+.+.... .+.......+++.+.+ .++. ...|+++|+||+|+.+
T Consensus 113 ~~~~~~~il~V~~~d~-~~~~~~~~~~~~~l~~----~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDV-YAVDELDKQVVIAITQ----TFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSC-SCCCHHHHHHHHHHHH----HHCGGGGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCC-CCCCHHHHHHHHHHHH----HhchhhhcCEEEEEeCcccCC
Confidence 26888877543322 2122222234444433 3332 2358999999999853
No 136
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.92 E-value=9.2e-10 Score=105.49 Aligned_cols=154 Identities=13% Similarity=0.044 Sum_probs=89.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|+|||||+|+|.+.++....+ |.|............+.++||||.... +. . ....+
T Consensus 21 i~v~G~~~~GKssli~~l~~~~~~~~~~-------t~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~-~--------~~~~~ 83 (183)
T 1moz_A 21 ILILGLDGAGKTTILYRLQIGEVVTTKP-------TIGFNVETLSYKNLKLNVWDLGGQTSI-RP-Y--------WRCYY 83 (183)
T ss_dssp EEEEEETTSSHHHHHHHTCCSEEEEECS-------STTCCEEEEEETTEEEEEEEEC----C-CT-T--------GGGTT
T ss_pred EEEECCCCCCHHHHHHHHhcCCcCccCC-------cCccceEEEEECCEEEEEEECCCCHhH-HH-H--------HHHHh
Confidence 7899999999999999999988854332 333333333334578899999998632 11 1 12235
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHh-----hcCC
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-----DSVP 156 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw-----~~i~ 156 (772)
..+|++|+.+...+.. ...-+...+...++.......|+++|+||.|+.+....+ .+.+.+.... -.+.
T Consensus 84 ~~~d~ii~v~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~i~~~~~~~~~~~~~~~~~ 157 (183)
T 1moz_A 84 ADTAAVIFVVDSTDKD-----RMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSAS-EVSKELNLVELKDRSWSIV 157 (183)
T ss_dssp TTEEEEEEEEETTCTT-----THHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHH-HHHHHTTTTTCCSSCEEEE
T ss_pred ccCCEEEEEEECCCHH-----HHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHH-HHHHHhCcccccCCceEEE
Confidence 6899998766543321 111111111111111112578999999999976432222 2222221100 0355
Q ss_pred CCCCccCCCchhhHHHHHhhcC
Q 004126 157 KPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
..|+..+.+++++|+.....++
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 158 ASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp EEBGGGTBTHHHHHHHHHHHHH
T ss_pred EccCCCCcCHHHHHHHHHHHHH
Confidence 6788999999999988776553
No 137
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.91 E-value=4.7e-09 Score=105.21 Aligned_cols=159 Identities=11% Similarity=-0.056 Sum_probs=89.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+..|..... +.++........... ...+.++||||... -+. . ...
T Consensus 16 i~v~G~~~vGKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~-~--------~~~ 81 (223)
T 3cpj_B 16 IVLIGDSGVGKSNLLSRFTKNEFNMDSK----STIGVEFATRTLEIEGKRIKAQIWDTAGQER-YRA-I--------TSA 81 (223)
T ss_dssp EEEESCTTSSHHHHHHHHHHCCCCC----------CCSEEEEEEEETTEEEEEEEECCTTTTT-TTC-C--------CGG
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCC----CcccceeEEEEEEECCEEEEEEEEECCCccc-hhh-h--------HHH
Confidence 6899999999999999999999875431 111111211112222 24789999999652 111 1 123
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+.. ....++..++. +.-......|+++|+||+|+.+...+. +...+......-.+...
T Consensus 82 ~~~~~d~vilV~D~~~~~-----s~~~~~~~l~~-i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 155 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSS-----SYENCNHWLSE-LRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTET 155 (223)
T ss_dssp GTTTCCEEEEEEC-CCHH-----HHHHHHHHHHH-HHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HhccCCEEEEEEeCCCHH-----HHHHHHHHHHH-HHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 356899887755432211 11112111111 111123578999999999975433222 22222222222246678
Q ss_pred CCccCCCchhhHHHHHhhcCCC
Q 004126 159 QAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lph~ 180 (772)
|+..+.+++++|+.....+...
T Consensus 156 Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 156 SALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp CCC-CCCHHHHHHHHHHHHTTC
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988776654
No 138
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.91 E-value=3e-09 Score=117.45 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=94.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCccccee------eEe--------c-----CCCCcEEEEecCCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM------ARC--------A-----GIEPCTLIMDLEGTDG 62 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~------~i~--------~-----~~~~qil~lDteG~~s 62 (772)
|+++|.+|+|||||+|+|.|....... +...+|.+... ++. . .....+.++||||-
T Consensus 11 I~vvG~~~~GKSTLi~~L~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh-- 85 (403)
T 3sjy_A 11 IGVVGHVDHGKTTLVQAITGIWTSKKL---GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH-- 85 (403)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCCCSSS---EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC--
T ss_pred EEEECCCCCCHHHHHHHHhCccccccc---CccccceeeccccccccceecccccccccccccccccceEEEEECCCc--
Confidence 789999999999999999995433211 11122211110 000 0 01157899999993
Q ss_pred cCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH
Q 004126 63 RERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 142 (772)
Q Consensus 63 ~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~ 142 (772)
..| .+.....++.+|++|+.+...+-. ........+..+.. . ..+|+++|+||+|+.+.+....
T Consensus 86 -------~~~-~~~~~~~~~~~D~~ilVvda~~~~-~~~qt~~~~~~~~~-----~--~~~~iivviNK~Dl~~~~~~~~ 149 (403)
T 3sjy_A 86 -------EVL-MATMLSGAALMDGAILVVAANEPF-PQPQTREHFVALGI-----I--GVKNLIIVQNKVDVVSKEEALS 149 (403)
T ss_dssp -------GGG-HHHHHHHHTTCSEEEEEEETTSCS-SCHHHHHHHHHHHH-----H--TCCCEEEEEECGGGSCHHHHHH
T ss_pred -------HHH-HHHHHHHHhhCCEEEEEEECCCCC-CcHHHHHHHHHHHH-----c--CCCCEEEEEECccccchHHHHH
Confidence 123 234566678999998877654311 01111112222211 1 2358999999999887665543
Q ss_pred HHHHHHHHH---h---hcCCCCCCccCCCchhhHHHHHhhcCCCc
Q 004126 143 VLREDIQKI---W---DSVPKPQAHMETPLSEFFNVEVVALSSFE 181 (772)
Q Consensus 143 ~l~~~l~~i---w---~~i~kpsa~~~~~l~dlf~~~~~~Lph~~ 181 (772)
...+..+.+ + ..+.+.|+..+.+++++|+.....+|...
T Consensus 150 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 150 QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 333222211 1 13667899999999999999988777543
No 139
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.89 E-value=5.2e-10 Score=109.87 Aligned_cols=158 Identities=12% Similarity=0.005 Sum_probs=86.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+.+|.... .+.+|............ ..+.++||||..... ... . .
T Consensus 36 i~vvG~~~~GKSsli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-~~~-~--------~ 101 (199)
T 3l0i_B 36 LLLIGDSGVGKSCLLLRFADDTYTESY----ISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-TIT-S--------S 101 (199)
T ss_dssp EEEECCTTSCCTTTTTSSBCCCCCCHH----HHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC-CCS-C--------C
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCc----CCcccceEEEEEEEECCEEEEEEEEECCCcHhHH-HHH-H--------H
Confidence 689999999999999999998886543 13333333333333222 478999999965222 111 1 2
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.+...+. ....-++...+. +.-......|+++|+||+|+.+...+. ....+....+.-.+.+.
T Consensus 102 ~~~~~d~~i~v~d~~~~-----~s~~~~~~~~~~-i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~v 175 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQ-----ESFNNVKQWLQE-IDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 175 (199)
T ss_dssp --CCCSEEEECC-CCCS-----HHHHHHHHHHHH-HHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCC
T ss_pred HhhcCCEEEEEEECCCH-----HHHHHHHHHHHH-HHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEE
Confidence 34679999775543321 111112211111 111122478999999999976443222 11112222223357788
Q ss_pred CCccCCCchhhHHHHHhhcCC
Q 004126 159 QAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~Lph 179 (772)
|+..+.+++++|+.....+..
T Consensus 176 SA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 176 SAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp CC---HHHHHHHHHHTTTTTT
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999887766543
No 140
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.88 E-value=1.1e-08 Score=99.87 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=89.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|+|.+|||||||+|++.+..|... ..+|.+.+.......+ ..+.++||+|... |.
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~------ 81 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGTYVQE------ESPEGGRFKKEIVVDGQSYLLLIRDEGGPPE---------LQ------ 81 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSSCCCC------CCTTCEEEEEEEEETTEEEEEEEEECSSSCC---------HH------
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCC------cCCCcceEEEEEEECCEEEEEEEEECCCChh---------hh------
Confidence 68999999999999999999988632 2334554433322232 4567799999741 11
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC--ChhchH-HHHHHHHHHHh-hcC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT--PLENLE-PVLREDIQKIW-DSV 155 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t--~~e~l~-~~l~~~l~~iw-~~i 155 (772)
.+..+|++|+.....+.. ...-+....+...+.......|+++|.||.|+. ....+. +...+....+. ..+
T Consensus 82 ~~~~~~~~i~v~d~~~~~-----s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEI-----SFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTY 156 (184)
T ss_dssp HHHHCSEEEEEEETTCHH-----HHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEE
T ss_pred eecCCCEEEEEEECcCHH-----HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeE
Confidence 355789987765433211 111111111111111111468999999999973 222222 22333333332 346
Q ss_pred CCCCCccCCCchhhHHHHHhhc
Q 004126 156 PKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~L 177 (772)
...|+..+.+++++|+.....+
T Consensus 157 ~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 157 YETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 6789999999999999776543
No 141
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.88 E-value=5.1e-09 Score=113.64 Aligned_cols=125 Identities=12% Similarity=0.072 Sum_probs=76.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccce-------------e-------------------------
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-------------M------------------------- 42 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw-------------~------------------------- 42 (772)
.|+|||.+|||||||||+|.|..|--. +.+.|||... .
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~----~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPR----GSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCC----CSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCC----CCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 378999999999999999999887321 2334443311 1
Q ss_pred -----------------eEecCCCCcEEEEecCCCCCcCCC---CCccHHHHHHHHHHhhcccEEEEeeccccccccccC
Q 004126 43 -----------------ARCAGIEPCTLIMDLEGTDGRERG---EDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAA 102 (772)
Q Consensus 43 -----------------~i~~~~~~qil~lDteG~~s~er~---e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~ 102 (772)
.+......++.++||||+.....+ .......+..+...+..+|++|+.+...... ..
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~---~~ 188 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD---LA 188 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC---GG
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC---cC
Confidence 111112457899999999854321 1123445667778889999887765432111 11
Q ss_pred CHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh
Q 004126 103 NKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 137 (772)
Q Consensus 103 n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~ 137 (772)
+...++.+.+ +.+...++++|+||+|..+.
T Consensus 189 ~~~~~~l~~~-----~~~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 189 TSDAIKISRE-----VDPSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp GCHHHHHHHH-----SCTTCTTEEEEEECGGGCCT
T ss_pred CHHHHHHHHH-----hcccCCCEEEEEeCCccCCC
Confidence 1222332222 23356789999999997643
No 142
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.87 E-value=3.6e-09 Score=102.05 Aligned_cols=163 Identities=10% Similarity=0.015 Sum_probs=92.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCC----CCCCCCcccceeeE-----ecCCCCcEEEEecCCCCCcCCCCCccHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAF----KGRSQTTKGIWMAR-----CAGIEPCTLIMDLEGTDGRERGEDDTAF 72 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~----~~r~QTTrGiw~~i-----~~~~~~qil~lDteG~~s~er~e~~~~f 72 (772)
|.|+|.+|+|||||+|.|.|......... .....+|.|.-... ......++.++||||.. +. .
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~---~~---~-- 88 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV---FY---N-- 88 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC---SC---S--
T ss_pred EEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH---HH---H--
Confidence 68999999999999999998654432110 00122344432221 11223478999999964 11 1
Q ss_pred HHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhh-cCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH
Q 004126 73 EKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRL-FSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 151 (772)
Q Consensus 73 e~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~l-f~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i 151 (772)
......+..+|++|+.+...+. + ...+...+..+.+....+ ......|+++|.||.|+.+.... +.+.+..+..
T Consensus 89 --~~~~~~~~~~d~~i~v~D~~~~-~-~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~ 163 (198)
T 3t1o_A 89 --ASRKLILRGVDGIVFVADSAPN-R-LRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPV-EMVRAVVDPE 163 (198)
T ss_dssp --HHHHHHTTTCCEEEEEEECCGG-G-HHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCH-HHHHHHHCTT
T ss_pred --HHHHHHHhcCCEEEEEEECCcc-h-hhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCH-HHHHHHHHhc
Confidence 1233467889999886644311 0 001222233332211111 11267899999999997543222 2223333222
Q ss_pred -hhcCCCCCCccCCCchhhHHHHHhhc
Q 004126 152 -WDSVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 152 -w~~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
+..+.+.|+..+.+++++|+.....+
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 21466789999999999998776543
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.87 E-value=5e-09 Score=118.69 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=94.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCC----eeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN----FREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk----fsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|+++|.+++|||||+|+|.|.. ++-.... ..+.+|.++-......+...+.++||||.. +| .+..
T Consensus 22 I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e-~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~---------~~-~~~~ 90 (482)
T 1wb1_A 22 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPES-QKRGITIDIGFSAFKLENYRITLVDAPGHA---------DL-IRAV 90 (482)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSHH---------HH-HHHH
T ss_pred EEEECCCCChHHHHHHHHHCCCccccccccccc-ccCccEEecceEEEEECCEEEEEEECCChH---------HH-HHHH
Confidence 7899999999999999999987 3221111 223355554333334455789999999952 23 3455
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHH--h
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKI--W 152 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~i--w 152 (772)
...++.+|++|+.+...+ |. .......+..+.. ...|.++|+||+|+.+.+.++ +.+.+.+... +
T Consensus 91 ~~~~~~aD~~ilVvda~~-g~-~~qt~e~l~~~~~--------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 160 (482)
T 1wb1_A 91 VSAADIIDLALIVVDAKE-GP-KTQTGEHMLILDH--------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL 160 (482)
T ss_dssp HHHTTSCCEEEEEEETTT-CS-CHHHHHHHHHHHH--------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG
T ss_pred HHHHhhCCEEEEEEecCC-Cc-cHHHHHHHHHHHH--------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc
Confidence 677889999988776532 11 1112222222222 456679999999988754433 3333333322 1
Q ss_pred --hcCCCCCCccCCCchhhHHHHHhhcC
Q 004126 153 --DSVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 153 --~~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
..+.+.|+..+.+++++++.....+|
T Consensus 161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 161 KNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 23567899999999999998877654
No 144
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.86 E-value=1.6e-08 Score=99.22 Aligned_cols=159 Identities=12% Similarity=-0.013 Sum_probs=89.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|||||||+|.|+|.....-+ .+...|++-+...+.......+.++||||...-.+. . .. ....+
T Consensus 23 i~~vG~~~vGKTsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---~-~~---~~~~~ 93 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVVFHKMSPNET--LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP---T-FD---YEMIF 93 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHSCCCGGGG--GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT---T-CC---HHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCcce--eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh---h-hh---ccccc
Confidence 689999999999999999995333211 133444444444443345678999999996521111 0 00 02334
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhc-CCCCccEEEEEeCCCCCChhchH---HHHHH-HHHHHhh---
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF-SPRKTTLMFVIRDKTRTPLENLE---PVLRE-DIQKIWD--- 153 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf-~~~k~~llfVIrd~d~t~~e~l~---~~l~~-~l~~iw~--- 153 (772)
..+|++|+.+...+- . ...++.+.+....+. .....|+++|.||+|+.+.+... ..+.. ..+.+-.
T Consensus 94 ~~~~~~i~v~d~~~~--~----~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 94 RGTGALIYVIDAQDD--Y----MEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HTCSEEEEEEETTSC--C----HHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCEEEEEEECCCc--h----HHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 679999876654331 1 112222222111111 12578999999999987643221 11211 1111111
Q ss_pred -----cCCCCCCccCCCchhhHHHHHhh
Q 004126 154 -----SVPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 154 -----~i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
.+...|+.. .+++++|+..+..
T Consensus 168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp TTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred hcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 244668888 8899998876653
No 145
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.86 E-value=2.2e-08 Score=96.99 Aligned_cols=132 Identities=11% Similarity=0.069 Sum_probs=71.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|.+|||||||+|+|.|..+...-. ...+.+|... ....+.++||||.... +... ..+ ....+
T Consensus 51 i~vvG~~g~GKSsll~~l~~~~~~~~~~-~~~~~~~~~~-------~~~~~~l~Dt~G~~~~-~~~~-~~~----~~~~~ 116 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAADY-------DGSGVTLVDFPGHVKL-RYKL-SDY----LKTRA 116 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSCC-------------CC-------CCTTCSEEEETTCCBS-SCCH-HHH----HHHHG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCcccc-cCCCceeeee-------cCCeEEEEECCCCchH-HHHH-HHH----HHhhc
Confidence 7899999999999999999988754211 1223333322 4568899999998732 2211 222 22234
Q ss_pred hcccEEEEeeccc-cccccccCCHHHHHHHHHHH--HhhcCCCCccEEEEEeCCCCCChh---chHHHHHHHHHHH
Q 004126 82 AVSDIVLINMWCH-DIGREQAANKPLLKTVFQVM--MRLFSPRKTTLMFVIRDKTRTPLE---NLEPVLREDIQKI 151 (772)
Q Consensus 82 a~sDvliiNl~~~-dig~~~~~n~~lLktv~evn--l~lf~~~k~~llfVIrd~d~t~~e---~l~~~l~~~l~~i 151 (772)
..+|++|+.+... +.. .-..+...+.++. .........|+++|+||+|+.+.. .+.+.+.+.+.++
T Consensus 117 ~~~~~~i~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~l~~l 188 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPK----KLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKV 188 (193)
T ss_dssp GGEEEEEEEEETTCCHH----HHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCCch----hHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHHHHHH
Confidence 5689997766443 111 1011112222211 011123578999999999976443 3445555555544
No 146
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.86 E-value=4.5e-09 Score=111.91 Aligned_cols=179 Identities=9% Similarity=0.029 Sum_probs=106.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC-CCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG-IEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~-~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+++|.+|||||||+|+++|......+ ..+.+|.++-.+.... ...++.++||||...- ...+.+......
T Consensus 6 I~lvG~~~vGKSSLi~~l~~~~~~~~~---~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~~ 77 (307)
T 3r7w_A 6 LLLMGRSGSGKSSMRSIIFSNYSAFDT---RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDHI 77 (307)
T ss_dssp EEEECCTTSSHHHHHHHHHSCCCTGGG---GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCccc---cCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHHH
Confidence 689999999999999999998555544 3688999998887653 4568999999997521 012223445556
Q ss_pred hhcccEEEEeeccccccccccCCH-HHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHHhh---
Q 004126 81 LAVSDIVLINMWCHDIGREQAANK-PLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKIWD--- 153 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~-~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~iw~--- 153 (772)
+..+|++|+.+...+.... .+. .+.+.+.++. -. ....|+++|+||+|+.+.+... ....+++..+-.
T Consensus 78 ~~~ad~vi~V~D~t~~~s~--~~l~~~~~~l~~l~--~~-~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 78 FQMVQVLIHVFDVESTEVL--KDIEIFAKALKQLR--KY-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG 152 (307)
T ss_dssp HTTCSEEEEEEETTCSCHH--HHHHHHHHHHHHHH--HH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCEEEEEEECCChhhH--HHHHHHHHHHHHHH--Hh-CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence 7789999876654332110 011 1112222211 01 2468999999999987633221 122233333322
Q ss_pred ----cCCCCCCccCCCchhhHHHHHhhcCCCccchhHHHHHHHHHHhh
Q 004126 154 ----SVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQR 197 (772)
Q Consensus 154 ----~i~kpsa~~~~~l~dlf~~~~~~Lph~~~~~~~F~~~v~~Lr~~ 197 (772)
.+...|+.. .++.+.|...+..+-. +.+.+.+.+..+...
T Consensus 153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~li~---~~~~le~~l~~~~~~ 196 (307)
T 3r7w_A 153 FPNLIGFPTSIWD-ESLYKAWSQIVCSLIP---NMSNHQSNLKKFKEI 196 (307)
T ss_dssp CCSCEEEECCTTS-SHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeeecC-ChHHHHHHHHHHHHcC---CHHHHHHHHHHHHhh
Confidence 334567766 6777777766654422 234455555555443
No 147
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.37 E-value=2.6e-10 Score=112.29 Aligned_cols=153 Identities=14% Similarity=0.041 Sum_probs=86.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+..|.. ....||...+....... ...+.++||||..... .....
T Consensus 33 i~v~G~~~~GKSsli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~~ 97 (204)
T 3th5_A 33 CVVVGDGAVGKTCLLISYTTNAFPG-----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD----------RLRPL 97 (204)
Confidence 6899999999999999999988742 22345544443332222 2355699999964111 12223
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-------------HHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-------------PVLRE 146 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-------------~~l~~ 146 (772)
.+..+|++|+.+...+..........++..+.+ . ..+.|+++|+||+|+.+..... +...+
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~-----~-~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRH-----H-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
Confidence 456788887755433322111110011222211 0 0278999999999975432111 11111
Q ss_pred HHHHHhh-cCCCCCCccCCCchhhHHHHHh
Q 004126 147 DIQKIWD-SVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 147 ~l~~iw~-~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
....+.. .+...|+..+.+++++|+....
T Consensus 172 ~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 1111111 4667889999999999886543
No 148
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.85 E-value=1e-08 Score=114.23 Aligned_cols=212 Identities=16% Similarity=0.136 Sum_probs=116.4
Q ss_pred CEEEeCCCCCChHHHHhHHhC----CCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG----TNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQS 76 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG----tkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~ 76 (772)
+|+|+|++|+|||||||.|.| ++-+|.. +..+|||..++--. ....++.+.|+||++.. +. ..+.-+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~---~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~-~~----~~~~~L 141 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKT---GVVEVTMERHPYKH-PNIPNVVFWDLPGIGST-NF----PPDTYL 141 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCC---CC----CCCEEEEC-SSCTTEEEEECCCGGGS-SC----CHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEE---CCeecceeEEeccc-cccCCeeehHhhcccch-HH----HHHHHH
Confidence 479999999999999999999 4444433 45677775332221 12358999999999732 21 222333
Q ss_pred HHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC------------ChhchHHHH
Q 004126 77 ALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT------------PLENLEPVL 144 (772)
Q Consensus 77 alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t------------~~e~l~~~l 144 (772)
..+.+...|..++ .+.|+.+.....+.+.+.. .++|+++|+++.+.. ..+.+.+.+
T Consensus 142 ~~~~L~~~~~~~~----lS~G~~~kqrv~la~aL~~--------~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l 209 (413)
T 1tq4_A 142 EKMKFYEYDFFII----ISATRFKKNDIDIAKAISM--------MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI 209 (413)
T ss_dssp HHTTGGGCSEEEE----EESSCCCHHHHHHHHHHHH--------TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HHcCCCccCCeEE----eCCCCccHHHHHHHHHHHh--------cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence 3445666666543 2445333333344455554 578999999998632 122233333
Q ss_pred HHHHH----HH---hhcCCCCCC--ccCCCchhhHHHHHhhcCCCccc----------hhHHHHHHHHHHhhhcccCCCC
Q 004126 145 REDIQ----KI---WDSVPKPQA--HMETPLSEFFNVEVVALSSFEEK----------EELFKEQVASLRQRFYHSVAPG 205 (772)
Q Consensus 145 ~~~l~----~i---w~~i~kpsa--~~~~~l~dlf~~~~~~Lph~~~~----------~~~F~~~v~~Lr~~f~~~~~~~ 205 (772)
.+... +. +..++..|+ .++.+++++.+.....||.-... ...-......+++.+-...
T Consensus 210 ~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~~~~~~~e~k~~~~~~~i~~~a--- 286 (413)
T 1tq4_A 210 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEG--- 286 (413)
T ss_dssp HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHHHHhcccchHHHHHHHHHHHHHHHHHHH---
Confidence 33221 11 113345577 55567999999999888854311 1111223333333333111
Q ss_pred CCCCCCCCcccCCchhHhHHHHHHHHHhcCCCCCchhHHHHHHhh
Q 004126 206 GLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVR 250 (772)
Q Consensus 206 ~~~~~~~~~ip~dg~~~y~~~iW~~I~~nkdLdlPtq~~mvA~~R 250 (772)
+....-..+|+-|+..- .|+|.|..|++.||
T Consensus 287 -~~a~~~~~~P~~g~~~~-------------~~~~~~~~~l~~~~ 317 (413)
T 1tq4_A 287 -FAADLVNIIPSLTFLLD-------------SDLETLKKSMKFYR 317 (413)
T ss_dssp -HHTCCBSSCTTSSCCCH-------------HHHHHHHHHHHHHH
T ss_pred -HHhhhcccCCCcchhcc-------------ccHHHHHHHHHHHH
Confidence 11112245788776532 24778888888876
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.85 E-value=1.4e-08 Score=112.34 Aligned_cols=160 Identities=13% Similarity=0.029 Sum_probs=96.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC---------------C--------CCcEEEEecC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG---------------I--------EPCTLIMDLE 58 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~---------------~--------~~qil~lDte 58 (772)
|+|+|..++|||||+|+|.|.......+. ..+..|.++-...... + ...+.|+|||
T Consensus 13 I~iiG~~~~GKSTLi~~L~g~~~~~~~~e-~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtP 91 (410)
T 1kk1_A 13 IGMVGHVDHGKTTLTKALTGVWTDTHSEE-LRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAP 91 (410)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCCC--CGG-GGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECS
T ss_pred EEEECCCCCCHHHHHHHHhCCccccChhh-hcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECC
Confidence 68999999999999999999765433221 1122343321111000 0 1578999999
Q ss_pred CCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh
Q 004126 59 GTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 138 (772)
Q Consensus 59 G~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e 138 (772)
|- .+|. +.....++.+|++|+.+...+-. ........+..+.. . ..+++++|+||+|+.+.+
T Consensus 92 Gh---------~~f~-~~~~~~~~~~D~~ilVvda~~g~-~~~qt~e~l~~~~~-----~--~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 92 GH---------EALM-TTMLAGASLMDGAILVIAANEPC-PRPQTREHLMALQI-----I--GQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp SH---------HHHH-HHHHHCGGGCSEEEEEEETTSCS-SCHHHHHHHHHHHH-----H--TCCCEEEEEECGGGSCHH
T ss_pred Ch---------HHHH-HHHHhhhhhCCEEEEEEECCCCC-CChhHHHHHHHHHH-----c--CCCcEEEEEECccCCCHH
Confidence 93 2343 45567788999998877654311 01111222222211 1 236799999999987765
Q ss_pred chHHH---HHHHHHHHh---hcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 139 NLEPV---LREDIQKIW---DSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 139 ~l~~~---l~~~l~~iw---~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
..... +.+.+...+ ..+.+.|+..+.+++++++.....+|..
T Consensus 154 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 154 KALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 43322 222222111 1356789999999999999998878754
No 150
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.84 E-value=5.4e-09 Score=113.08 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=87.5
Q ss_pred CEEEeCCCCCChHHHHhHHh------CCCeeeecCCCCCCCCcc--cceeeEec--------------------------
Q 004126 1 MCHIFFVIMTGKSTLLNHLF------GTNFREMDAFKGRSQTTK--GIWMARCA-------------------------- 46 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf------Gtkfsims~~~~r~QTTr--Giw~~i~~-------------------------- 46 (772)
+|+|+|+||+|||||+|.|. |.++.+++. -++||+ |.+++...
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~---d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV---DPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE---CCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee---cCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 37899999999999999996 678888874 356654 22222100
Q ss_pred -----------CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHH
Q 004126 47 -----------GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMM 115 (772)
Q Consensus 47 -----------~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl 115 (772)
..+.+++|+||||+...+ . ..+..+|++++.+.... | . ....++. ..
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~-------~------~~~~~aD~vl~Vvd~~~-~--~--~~~~l~~-~~--- 192 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSE-------T------EVARMVDCFISLQIAGG-G--D--DLQGIKK-GL--- 192 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHH-------H------HHHTTCSEEEEEECC-----------CCCCH-HH---
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchH-------H------HHHHhCCEEEEEEeCCc-c--H--HHHHHHH-hh---
Confidence 135789999999986211 1 12589999977664321 1 1 1001110 00
Q ss_pred hhcCCCCccEEEEEeCCCCCChhchHH---HHHHHHHHH------h-hcCCCCCCccCCCchhhHHHHHhhcC
Q 004126 116 RLFSPRKTTLMFVIRDKTRTPLENLEP---VLREDIQKI------W-DSVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 116 ~lf~~~k~~llfVIrd~d~t~~e~l~~---~l~~~l~~i------w-~~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
...|.++|+||+|..+...+.. .+.+.+..+ | ..+.+.|+.++.+++++++.....++
T Consensus 193 -----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 193 -----MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp -----HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred -----hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1356789999999876544432 222222211 2 23567889999999999998766543
No 151
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.84 E-value=1.2e-09 Score=118.69 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=89.8
Q ss_pred EEEeCCCCCChHHHHhHHh------CCCeeeecCCCCCCCCcc--c-----------------ceee-------------
Q 004126 2 CHIFFVIMTGKSTLLNHLF------GTNFREMDAFKGRSQTTK--G-----------------IWMA------------- 43 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf------Gtkfsims~~~~r~QTTr--G-----------------iw~~------------- 43 (772)
|+|+|.||+|||||+|+|. |.++.+++. -+|+|. | +.+-
T Consensus 82 I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~---Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 158 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV---DPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTR 158 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE---C----------------CHHHHTCTTEEEECCC--CCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec---CCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchhH
Confidence 7899999999999999996 778888764 344443 1 1110
Q ss_pred -------EecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHH-HHHHHHH
Q 004126 44 -------RCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLK-TVFQVMM 115 (772)
Q Consensus 44 -------i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLk-tv~evnl 115 (772)
.+...+.+++|+||||+.. . ....+..+|++|+.+.. +. +.....++ .+
T Consensus 159 ~t~d~i~~~~~~~~~~iiiDTpGi~~-------~------~~~~~~~aD~vl~V~d~---~~--~~~~~~l~~~~----- 215 (355)
T 3p32_A 159 ATRETVVLLEAAGFDVILIETVGVGQ-------S------EVAVANMVDTFVLLTLA---RT--GDQLQGIKKGV----- 215 (355)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCSS-------H------HHHHHTTCSEEEEEEES---ST--TCTTTTCCTTS-----
T ss_pred HHHHHHHHHhhCCCCEEEEeCCCCCc-------H------HHHHHHhCCEEEEEECC---CC--CccHHHHHHhH-----
Confidence 0011457899999999751 1 11234889999887653 21 11111111 11
Q ss_pred hhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHH------h-hcCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 116 RLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKI------W-DSVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 116 ~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~i------w-~~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
...|.++|+||+|..+..... ..+.+.+..+ | ..+.+.|+.++.+++++++.+...++.
T Consensus 216 -----~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 216 -----LELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp -----GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred -----hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 235889999999986554433 2333333222 3 246778999999999999887765543
No 152
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.83 E-value=3.6e-09 Score=105.52 Aligned_cols=156 Identities=8% Similarity=-0.116 Sum_probs=93.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCee-eecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFR-EMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfs-ims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|.|+|.+|||||||+|++++..|. ..+ +...+|..............+.++||||.. .-+.. ....
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-~~~~~---------~~~~ 84 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYV---ATLGVEVHPLVFHTNRGPIKFNVWDTAGQE-KFGGL---------RDGY 84 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHHHTCEEE---TTTTEEEEEEEEEETTEEEEEEEEEECSGG-GTSCC---------CHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCCC---CccceeEEEEEEEECCEEEEEEEEeCCChH-HHhHH---------HHHH
Confidence 689999999999999995544443 333 345567766666555555688999999964 22211 1223
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcCCCCCC
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 160 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i~kpsa 160 (772)
+..+|++|+.+...+..... .-...+..+.+ . ....|+++|+||+|+.+...... ..+......-.+...|+
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~----~--~~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa 156 (221)
T 3gj0_A 85 YIQAQCAIIMFDVTSRVTYK-NVPNWHRDLVR----V--CENIPIVLCGNKVDIKDRKVKAK-SIVFHRKKNLQYYDISA 156 (221)
T ss_dssp HTTCCEEEEEEETTCHHHHH-THHHHHHHHHH----H--STTCCEEEEEECTTSSSCSSCGG-GCCHHHHHTCEEEECBG
T ss_pred HhcCCEEEEEEECCCHHHHH-HHHHHHHHHHH----h--CCCCCEEEEEECCccccccccHH-HHHHHHHcCCEEEEEeC
Confidence 56899998766443211000 00111222221 1 13789999999999754332221 11112222234677899
Q ss_pred ccCCCchhhHHHHHhhcC
Q 004126 161 HMETPLSEFFNVEVVALS 178 (772)
Q Consensus 161 ~~~~~l~dlf~~~~~~Lp 178 (772)
..+.+++++|+.....+.
T Consensus 157 ~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 157 KSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp GGTBTTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998776553
No 153
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.83 E-value=2.1e-08 Score=95.72 Aligned_cols=150 Identities=13% Similarity=0.099 Sum_probs=87.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.++|.+|+|||||+|+|.+.+|.... .|+...+..... .....+.++||||... . .
T Consensus 10 i~~vG~~~vGKTsli~~l~~~~~~~~~------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~--------~ 68 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTGSYQVLE------KTESEQYKKEMLVDGQTHLVLIREEAGAPD-------A--------K 68 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHSCCCCCS------SCSSSEEEEEEEETTEEEEEEEEECSSSCC-------H--------H
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCcC------CCcceeEEEEEEECCEEEEEEEEECCCCch-------h--------H
Confidence 789999999999999999999987522 122222222111 1234678899999651 1 1
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcC--CCCccEEEEEeCCCCCC--hhch-HHHHHHHHHHHh-h
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS--PRKTTLMFVIRDKTRTP--LENL-EPVLREDIQKIW-D 153 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~--~~k~~llfVIrd~d~t~--~e~l-~~~l~~~l~~iw-~ 153 (772)
.+..+|++|+.....+.. ...-++...+....+.. ....|+++|.||.|+.+ ...+ .+...+...... -
T Consensus 69 ~~~~~d~~ilv~D~~~~~-----s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~ 143 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDEN-----SFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRC 143 (178)
T ss_dssp HHHHCSEEEEEEETTCHH-----HHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSE
T ss_pred HHHhCCEEEEEEECcCHH-----HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCC
Confidence 245689998765432211 11112221111111111 25789999999999731 1111 122222222332 2
Q ss_pred cCCCCCCccCCCchhhHHHHHhhc
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
.+...|+..+.+++++|+.....+
T Consensus 144 ~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 144 SYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEEeccccCCHHHHHHHHHHHH
Confidence 466789999999999999876554
No 154
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.81 E-value=7.8e-09 Score=120.43 Aligned_cols=156 Identities=14% Similarity=0.127 Sum_probs=93.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecC----------CCCC-----------------CCCcccceeeEecCCCCcEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDA----------FKGR-----------------SQTTKGIWMARCAGIEPCTLI 54 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~----------~~~r-----------------~QTTrGiw~~i~~~~~~qil~ 54 (772)
|+|+|.+|+|||||+|+|++....+... ..|+ +.+|..+..........++.|
T Consensus 170 V~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~i 249 (611)
T 3izq_1 170 FVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTI 249 (611)
T ss_dssp EEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEE
Confidence 7899999999999999999886655321 0111 235666555666667789999
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCC
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 134 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~ 134 (772)
+||||.. .| .+.+..++..+|++|+.+...+ |... ..+.+.....+....+.....+++++|+||+|+
T Consensus 250 iDTPG~e---------~f-~~~~~~~~~~aD~~llVVDa~~-g~~e-~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl 317 (611)
T 3izq_1 250 VDAPGHR---------DF-VPNAIMGISQADMAILCVDCST-NAFE-SGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 317 (611)
T ss_dssp EECCSSS---------CH-HHHHTTTSSCCSEEEEEEECSH-HHHH-TTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTT
T ss_pred EECCCCc---------cc-HHHHHHHHhhcCceEEEEECCC-Cccc-ccchhhhHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 9999963 12 4556677889999988775532 1000 000000011111111111123569999999998
Q ss_pred CC--hhc---hHHHHHHHHHHH-h----hcCCCCCCccCCCchhh
Q 004126 135 TP--LEN---LEPVLREDIQKI-W----DSVPKPQAHMETPLSEF 169 (772)
Q Consensus 135 t~--~e~---l~~~l~~~l~~i-w----~~i~kpsa~~~~~l~dl 169 (772)
.+ .+. +.+.+...+..+ + ..+.+.|+..+.++.++
T Consensus 318 ~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 318 VDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 75 222 223333333332 1 24678899999999876
No 155
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.80 E-value=2.2e-08 Score=97.59 Aligned_cols=156 Identities=11% Similarity=-0.010 Sum_probs=87.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|||||||+|+|.+.+|.. ....|+...+...... ....+.++||||.. .-+. . . .
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~-~-~--------~ 87 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKRFIS-----EYDPNLEDTYSSEETVDHQPVHLRVMDTADLD-TPRN-C-E--------R 87 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSCCS-----CCCTTCCEEEEEEEEETTEEEEEEEEECCC----CCC-T-H--------H
T ss_pred EEEECCCCCcHHHHHHHHHhCCCCc-----ccCCCccceeeEEEEECCEEEEEEEEECCCCC-cchh-H-H--------H
Confidence 7899999999999999999988752 2344555444322222 23467889999975 1111 1 1 2
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
.+..+|++|+.....+...... -...++.+.+.... .....|+++|.||+|+.....+. +...+....+--.+...
T Consensus 88 ~~~~~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 164 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQSFDS-SSSYLELLALHAKE--TQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEV 164 (187)
T ss_dssp HHTTCSEEEEEEETTCHHHHHH-HHHHHHHHHHHHHH--HCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEC
T ss_pred HHhhCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhhc--cCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEE
Confidence 3467888877554332110000 00111222110000 01478899999999975332222 22222222332246678
Q ss_pred CC-ccCCCchhhHHHHHhh
Q 004126 159 QA-HMETPLSEFFNVEVVA 176 (772)
Q Consensus 159 sa-~~~~~l~dlf~~~~~~ 176 (772)
|+ ..+.+++++|+.....
T Consensus 165 Sa~~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 165 SACLDFEHVQHVFHEAVRE 183 (187)
T ss_dssp CSSSCSHHHHHHHHHHHHH
T ss_pred eecCccccHHHHHHHHHHH
Confidence 88 7899999999877654
No 156
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.78 E-value=5.1e-09 Score=104.70 Aligned_cols=156 Identities=12% Similarity=0.004 Sum_probs=90.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|||||||+|+|.+..|.. ....|+...+...... ....+.++||+|...- +. ....
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-~~---------~~~~ 94 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKDCYPE-----TYVPTVFENYTACLETEEQRVELSLWDTSGSPYY-DN---------VRPL 94 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCS-----SCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGG-TT---------TGGG
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCC-----CcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhH-HH---------HHHH
Confidence 6899999999999999999988853 1233333222222222 2357889999997521 11 1122
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh------------hch-HHHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL------------ENL-EPVLRE 146 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~------------e~l-~~~l~~ 146 (772)
.+..+|++|+.+...+.......-..+++.+.+ . ....|+++|.||+|+.+. ..+ .+...+
T Consensus 95 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~----~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (214)
T 3q3j_B 95 CYSDSDAVLLCFDISRPETVDSALKKWRTEILD----Y--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168 (214)
T ss_dssp GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHH----H--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHH----h--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence 356899998866543321111000111222222 1 147899999999997531 111 122222
Q ss_pred HHHHHhh-cCCCCCCccCCC-chhhHHHHHhhcC
Q 004126 147 DIQKIWD-SVPKPQAHMETP-LSEFFNVEVVALS 178 (772)
Q Consensus 147 ~l~~iw~-~i~kpsa~~~~~-l~dlf~~~~~~Lp 178 (772)
....+.. .+...|+..+.+ ++++|+.....+.
T Consensus 169 ~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 2323322 467789999998 9999998776543
No 157
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.78 E-value=1.7e-08 Score=115.35 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=83.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeE--------e----cCCCCcEEEEecCCCCCcCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR--------C----AGIEPCTLIMDLEGTDGRERGEDD 69 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i--------~----~~~~~qil~lDteG~~s~er~e~~ 69 (772)
|+++|.+|+|||||+|+|.|.+|.. ....|-|+-... . ......+.+.||||...- +. .
T Consensus 44 V~lvG~~~vGKSSLl~~l~~~~~~~------~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~-~~-~- 114 (535)
T 3dpu_A 44 VHLIGDGMAGKTSLLKQLIGETFDP------KESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIM-HA-S- 114 (535)
T ss_dssp EEEESSSCSSHHHHHHHHHC-----------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTT-TT-T-
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC------CCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHH-HH-H-
Confidence 7899999999999999999998852 122233322211 1 112468999999995421 11 1
Q ss_pred cHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHH
Q 004126 70 TAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDI 148 (772)
Q Consensus 70 ~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l 148 (772)
. .+.+..+|++|+.+...+ . .....+++.+.+ +. .+.|+++|.||+|..+...+. +.+.+..
T Consensus 115 ~-------~~~l~~~d~ii~V~D~s~---~-~~~~~~~~~l~~-----~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~ 177 (535)
T 3dpu_A 115 H-------QFFMTRSSVYMLLLDSRT---D-SNKHYWLRHIEK-----YG-GKSPVIVVMNKIDENPSYNIEQKKINERF 177 (535)
T ss_dssp C-------HHHHHSSEEEEEEECGGG---G-GGHHHHHHHHHH-----HS-SSCCEEEEECCTTTCTTCCCCHHHHHHHC
T ss_pred H-------HHHccCCcEEEEEEeCCC---c-hhHHHHHHHHHH-----hC-CCCCEEEEEECCCcccccccCHHHHHHHH
Confidence 1 123557998877654322 1 122223333333 11 358899999999986544432 2233322
Q ss_pred HHHhhcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 149 QKIWDSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 149 ~~iw~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
..+-..+.+.|+.++.+++++|+.....+.+.
T Consensus 178 ~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 178 PAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp GGGTTCEEECCC-----CTTHHHHHHHHHTCT
T ss_pred HhcCCceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 22222367889999999999999887776653
No 158
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.77 E-value=8.8e-09 Score=118.04 Aligned_cols=114 Identities=18% Similarity=0.142 Sum_probs=68.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeee----------------ecC--CCCCCCCcccceeeEecCCCCcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFRE----------------MDA--FKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsi----------------ms~--~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~ 63 (772)
|+|+|.+|+|||||+|+|++..-.+ ++. ......+|...-.......+..+.++||||...
T Consensus 16 IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~d- 94 (528)
T 3tr5_A 16 FAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHAD- 94 (528)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTT-
T ss_pred EEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchh-
Confidence 7899999999999999997322211 000 000012233333333334567899999999641
Q ss_pred CCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 64 ERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 64 er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
| ...+..++..+|++|+.+...+ |. ......+++.+.+ ...|+++|+||+|+.
T Consensus 95 --------f-~~~~~~~l~~aD~allVvDa~~-g~-~~~t~~~~~~~~~--------~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 95 --------F-TEDTYRTLTAVDSALMVIDAAK-GV-EPRTIKLMEVCRL--------RHTPIMTFINKMDRD 147 (528)
T ss_dssp --------C-CHHHHHGGGGCSEEEEEEETTT-CS-CHHHHHHHHHHHT--------TTCCEEEEEECTTSC
T ss_pred --------H-HHHHHHHHHhCCEEEEEEeCCC-CC-CHHHHHHHHHHHH--------cCCCEEEEEeCCCCc
Confidence 1 1246678899999988776533 10 1112222332222 578999999999975
No 159
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.77 E-value=1.6e-08 Score=112.74 Aligned_cols=162 Identities=15% Similarity=0.064 Sum_probs=101.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC-CcEEEEecCCCCCc-CCCC-CccHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE-PCTLIMDLEGTDGR-ERGE-DDTAFEKQSA 77 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~-~qil~lDteG~~s~-er~e-~~~~fe~k~a 77 (772)
.|+|||++|+|||||||.|.|.+..+- +.+-||...-+|.....+ ..+.+.||||+... ..+. ....|
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~----~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f----- 229 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIA----PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF----- 229 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEEC----CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH-----
T ss_pred EEEEECCCCCcHHHHHHHHHcCCcccc----CcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHH-----
Confidence 378999999999999999999887653 467788888888877654 78999999998521 1111 11223
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCC--CCccEEEEEeCCCCCChhchHHHHHHHHHHHhhcC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 155 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~--~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~~i 155 (772)
+..+..+|++|..+... + ....-+....+.-. .+.+ ...|.++|+|+.|....+.+ ..+.+.+...-..+
T Consensus 230 l~~~era~~lL~vvDls---~---~~~~~ls~g~~el~-~la~aL~~~P~ILVlNKlDl~~~~~~-~~l~~~l~~~g~~v 301 (416)
T 1udx_A 230 LRHIARTRVLLYVLDAA---D---EPLKTLETLRKEVG-AYDPALLRRPSLVALNKVDLLEEEAV-KALADALAREGLAV 301 (416)
T ss_dssp HHHHTSSSEEEEEEETT---S---CHHHHHHHHHHHHH-HHCHHHHHSCEEEEEECCTTSCHHHH-HHHHHHHHTTTSCE
T ss_pred HHHHHHHHhhhEEeCCc---c---CCHHHHHHHHHHHH-HHhHHhhcCCEEEEEECCChhhHHHH-HHHHHHHHhcCCeE
Confidence 22356789887655432 1 11111222211111 1111 24677788899998755322 22333332111146
Q ss_pred CCCCCccCCCchhhHHHHHhhcCC
Q 004126 156 PKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 156 ~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
...|+..+.+++++++.....++.
T Consensus 302 i~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 302 LPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEECCCccCHHHHHHHHHHHHHh
Confidence 778999999999999988776643
No 160
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.77 E-value=5.5e-09 Score=114.49 Aligned_cols=142 Identities=11% Similarity=0.033 Sum_probs=83.4
Q ss_pred EEEeCCCCCChHHHHhHHhCC-----CeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT-----NFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQS 76 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt-----kfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~ 76 (772)
|.++|.+|+|||||+|+|+|. +...++ ..+.||++....... ..+.++||||+...... ..++...
T Consensus 165 i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~---~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~---~~~l~~~ 235 (369)
T 3ec1_A 165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTS---YFPGTTLDMIEIPLE---SGATLYDTPGIINHHQM---AHFVDAR 235 (369)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE---ECTTSSCEEEEEECS---TTCEEEECCSCCCCSSG---GGGSCTT
T ss_pred EEEEcCCCCchHHHHHHHHhhccCCccceeec---CCCCeEEeeEEEEeC---CCeEEEeCCCcCcHHHH---HHHHhHH
Confidence 789999999999999999997 444455 357799998765542 45899999999854321 1111111
Q ss_pred HHHH---hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh
Q 004126 77 ALFA---LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 153 (772)
Q Consensus 77 alfA---La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~ 153 (772)
.+.. ....|.+++.+...+- ...+ +...+. .....+.|+++|+++.|......++......-+.+-.
T Consensus 236 ~l~~~~~~~~i~~~~~~l~~~~~-~~~g-~l~~l~--------~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~ 305 (369)
T 3ec1_A 236 DLKIITPKREIHPRVYQLNEGQT-LFFG-GLARLD--------YIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE 305 (369)
T ss_dssp THHHHSCSSCCCCEEEEECTTEE-EEET-TTEEEE--------EEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT
T ss_pred HHHHHhcccccCceEEEEcCCce-EEEC-CEEEEE--------EccCCCceEEEEecCCcccccccHHHHHHHHHHhcCC
Confidence 2222 2567777655533110 0011 110111 1112578899999999976555555433333233333
Q ss_pred cCCCCCCcc
Q 004126 154 SVPKPQAHM 162 (772)
Q Consensus 154 ~i~kpsa~~ 162 (772)
.+.+|.+-.
T Consensus 306 ~l~p~~~~~ 314 (369)
T 3ec1_A 306 LLSPPSKRY 314 (369)
T ss_dssp TBCSSCGGG
T ss_pred ccCCCCchh
Confidence 466776543
No 161
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.75 E-value=4e-08 Score=96.62 Aligned_cols=161 Identities=12% Similarity=0.034 Sum_probs=80.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCe-eeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCC-CCccHHHHHHH--
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNF-REMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERG-EDDTAFEKQSA-- 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkf-sims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~-e~~~~fe~k~a-- 77 (772)
|+|+|++|+|||||+|+|.|..| ..++ +.+.||+.. +..... ..+.++||||....... +....+.....
T Consensus 29 v~lvG~~g~GKSTLl~~l~g~~~~~~~~---~~~G~~~~~--~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 29 VAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGRTQLI--NLFEVA-DGKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp EEEEECTTSSHHHHHTTTCCC----------------CCE--EEEEEE-TTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCcccccc---CCCccceee--EEEEec-CCEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 78999999999999999999884 3323 234455532 222222 27889999998532111 00012222221
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH---HHHHHHHHHH--h
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE---PVLREDIQKI--W 152 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~---~~l~~~l~~i--w 152 (772)
......+|.+++.....+.. ......+.+.+.. ...|.++|.|++|..+..... ..+...+... .
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~--------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~ 172 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPL--KDLDQQMIEWAVD--------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD 172 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHHH--------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred HHhhhcccEEEEEEECCCCC--chhHHHHHHHHHH--------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence 12234677766544332211 1011112222222 467888999999875443221 1222222111 1
Q ss_pred hcCCCCCCccCCCchhhHHHHHhhcC
Q 004126 153 DSVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 153 ~~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
-.+.+.|++.+.++.++++.....++
T Consensus 173 ~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 173 VQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CceEEEeecCCCCHHHHHHHHHHHHh
Confidence 12346788888899999887766544
No 162
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.74 E-value=6.9e-09 Score=109.19 Aligned_cols=156 Identities=14% Similarity=0.050 Sum_probs=92.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|++.+..|.- ....||...+.......+ ..+.++||||..... . ....
T Consensus 158 i~i~G~~~~GKssli~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~---------~~~~ 222 (332)
T 2wkq_A 158 CVVVGDGAVGKTCLLISYTTNAFPG-----EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-R---------LRPL 222 (332)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCC-----SCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-T---------TGGG
T ss_pred EEEECCCCCChHHHHHHHHhCCCCc-----ccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-H---------HHHH
Confidence 6899999999999999999887742 245677666655444333 345599999975221 1 1123
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhc------------hH-HHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN------------LE-PVLRE 146 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~------------l~-~~l~~ 146 (772)
.+..+|++|+.+...+..........+++.+.+ .. .+.|+++|.||+|+.+... +. ....+
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-----~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 296 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH-----HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 296 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-----HC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-----hC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHH
Confidence 457899998766443211000000001112211 11 3789999999998743211 11 11112
Q ss_pred HHHHHh-hcCCCCCCccCCCchhhHHHHHhhcC
Q 004126 147 DIQKIW-DSVPKPQAHMETPLSEFFNVEVVALS 178 (772)
Q Consensus 147 ~l~~iw-~~i~kpsa~~~~~l~dlf~~~~~~Lp 178 (772)
...... ..+.+.|+..+.+++++|+.....+.
T Consensus 297 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 297 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 222221 14667899999999999998776543
No 163
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.72 E-value=1.6e-08 Score=114.29 Aligned_cols=156 Identities=13% Similarity=0.093 Sum_probs=89.3
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeec-------------------------CC--CCCCCCcccceeeEecCCCCcEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMD-------------------------AF--KGRSQTTKGIWMARCAGIEPCTLI 54 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims-------------------------~~--~~r~QTTrGiw~~i~~~~~~qil~ 54 (772)
|+|+|.+|+|||||+|+|++....+.. .. ...+.+|..+-.........++.|
T Consensus 36 i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~i 115 (483)
T 3p26_A 36 FVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTI 115 (483)
T ss_dssp EEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceEEE
Confidence 689999999999999999876222111 00 011234444444445567789999
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccC-CHHHHHHHHHHHHhhcCCCCccEEEEEeCCC
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAA-NKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 133 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~-n~~lLktv~evnl~lf~~~k~~llfVIrd~d 133 (772)
+||||.. +| .+....++..+|++|+.+...+-..+.+- -....+........ ...+++++|+||+|
T Consensus 116 iDTPG~~---------~f-~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---~~~~~iIvviNK~D 182 (483)
T 3p26_A 116 VDAPGHR---------DF-VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMD 182 (483)
T ss_dssp ECCCCCG---------GG-HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH---TTCCCEEEEEECGG
T ss_pred EECCCcH---------HH-HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---cCCCcEEEEEECcC
Confidence 9999983 12 34566778899999887765331111000 00111111111111 12357999999999
Q ss_pred CCC--hhc---hHHHHHHHHHHH-h----hcCCCCCCccCCCchhhH
Q 004126 134 RTP--LEN---LEPVLREDIQKI-W----DSVPKPQAHMETPLSEFF 170 (772)
Q Consensus 134 ~t~--~e~---l~~~l~~~l~~i-w----~~i~kpsa~~~~~l~dlf 170 (772)
+.+ .+. +.+.+.+.+..+ + ..+.+.|+..+.++.++.
T Consensus 183 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 183 NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 865 222 223333333222 1 246788999999998764
No 164
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.72 E-value=2.6e-08 Score=96.65 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=79.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec-------CCCCcEEEEecCCCCCcCCCCCccHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA-------GIEPCTLIMDLEGTDGRERGEDDTAFEK 74 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~-------~~~~qil~lDteG~~s~er~e~~~~fe~ 74 (772)
|+|+|++|+|||||+|+|.|..-... +..++|.|+-..... .....+.++||+|.... +.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~~~~~~----~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~-------- 71 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKTKKSDL----GMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEF-YS-------- 71 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC---------------CSEEEEEEEC---------CEEEEEEECSHHHH-HT--------
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccC----CCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHH-HH--------
Confidence 78999999999999999999532211 234556655433221 13467889999997511 11
Q ss_pred HHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHhh-
Q 004126 75 QSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD- 153 (772)
Q Consensus 75 k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw~- 153 (772)
.....+..+|++++... +.....+-..+-+.+.++... ....|+++|.||+|+.+...+.....+..+.+..
T Consensus 72 -~~~~~~~~~~~~i~v~d---~~~~~~s~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 144 (184)
T 2zej_A 72 -THPHFMTQRALYLAVYD---LSKGQAEVDAMKPWLFNIKAR---ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNK 144 (184)
T ss_dssp -TSHHHHHHSEEEEEEEE---GGGCHHHHHTHHHHHHHHHHH---CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTC
T ss_pred -hhHHHccCCcEEEEEEe---CCcchhHHHHHHHHHHHHHhh---CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHh
Confidence 11223456787765433 321111101111222111111 1368899999999986544433222222222211
Q ss_pred -------cCCCCCCccCC-CchhhHHHHHhhcCC
Q 004126 154 -------SVPKPQAHMET-PLSEFFNVEVVALSS 179 (772)
Q Consensus 154 -------~i~kpsa~~~~-~l~dlf~~~~~~Lph 179 (772)
.+...|+..+. ++.++++.+...++.
T Consensus 145 ~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 145 RGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred cCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 13345666665 677777766655543
No 165
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.72 E-value=3.7e-09 Score=122.76 Aligned_cols=158 Identities=9% Similarity=-0.001 Sum_probs=75.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecC-------------------------C--CCCCCCcccceeeEecCCCCcEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDA-------------------------F--KGRSQTTKGIWMARCAGIEPCTLI 54 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~-------------------------~--~~r~QTTrGiw~~i~~~~~~qil~ 54 (772)
|+|+|.+|+|||||+|+|++..-.+.+. . ...+.+|.++..........++.|
T Consensus 180 I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~i 259 (592)
T 3mca_A 180 LVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEI 259 (592)
T ss_dssp EEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------C
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEE
Confidence 7899999999999999998643332211 0 013467777776666666789999
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccc----cc-cccCCHHHHHHHHHHHHhhcCCCCc-cEEEE
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDI----GR-EQAANKPLLKTVFQVMMRLFSPRKT-TLMFV 128 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~di----g~-~~~~n~~lLktv~evnl~lf~~~k~-~llfV 128 (772)
+||||...--+ ....++..+|++|+.+...+- |- ........+..+.. ... ++++|
T Consensus 260 iDTPGh~~f~~----------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--------lgip~iIvv 321 (592)
T 3mca_A 260 GDAPGHRDFIS----------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--------LGISEIVVS 321 (592)
T ss_dssp CEEESSSEEEE----------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--------SSCCCEEEE
T ss_pred EECCChHHHHH----------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--------cCCCeEEEE
Confidence 99999752111 112345678988776665331 10 01222223333332 334 49999
Q ss_pred EeCCCCCC--hhchHHHHHHHHHHHh----------hcCCCCCCccCCCch--------------hhHHHHHhhcC
Q 004126 129 IRDKTRTP--LENLEPVLREDIQKIW----------DSVPKPQAHMETPLS--------------EFFNVEVVALS 178 (772)
Q Consensus 129 Ird~d~t~--~e~l~~~l~~~l~~iw----------~~i~kpsa~~~~~l~--------------dlf~~~~~~Lp 178 (772)
+||+|+.+ .+.+... .+.+..+. -.+++.|+..+.++. .|++.+...+|
T Consensus 322 iNKiDl~~~~~~~~~~i-~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 322 VNKLDLMSWSEDRFQEI-KNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp EECGGGGTTCHHHHHHH-HHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred EeccccccccHHHHHHH-HHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 99999864 3333322 22333322 136788999999997 67777766666
No 166
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.72 E-value=4.6e-08 Score=108.16 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=88.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC---------------C--------CCcEEEEecC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG---------------I--------EPCTLIMDLE 58 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~---------------~--------~~qil~lDte 58 (772)
|+|+|..++|||||+|+|.|......... ..+..|.++-...... + ...+.|+|||
T Consensus 11 I~iiG~~d~GKSTLi~~L~g~~~~~~~~e-~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtP 89 (408)
T 1s0u_A 11 IGMVGHVDHGKTSLTKALTGVWTDRHSEE-LRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSP 89 (408)
T ss_dssp EEEESCTTSSHHHHHHHHHSCCCCC--------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECS
T ss_pred EEEEcCCCCCHHHHHHHHhCCccccCccc-ccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECC
Confidence 68999999999999999999765433321 1122233321111000 1 1478999999
Q ss_pred CCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh
Q 004126 59 GTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 138 (772)
Q Consensus 59 G~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e 138 (772)
|- .+|. +.....++.+|++|+.+...+-. ........+..+. .. ..+++++|+||+|+.+.+
T Consensus 90 Gh---------~~f~-~~~~~~~~~~D~~ilVvda~~g~-~~~qt~e~l~~~~-----~l--~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 90 GH---------ETLM-ATMLSGASLMDGAILVIAANEPC-PQPQTKEHLMALE-----IL--GIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp SH---------HHHH-HHHHTTCSCCSEEEEEEETTSCS-SCHHHHHHHHHHH-----HT--TCCCEEEEEECTTSSCTT
T ss_pred CH---------HHHH-HHHHHhHhhCCEEEEEEECCCCC-CCchhHHHHHHHH-----Hc--CCCeEEEEEEccCCCCHH
Confidence 93 2343 34556677899998877654311 0111111222111 11 235799999999987654
Q ss_pred chH---HHHHHHHHHHh---hcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 139 NLE---PVLREDIQKIW---DSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 139 ~l~---~~l~~~l~~iw---~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
.+. +.+.+.+...+ ..+.+.|+..+.+++++++.....+|..
T Consensus 152 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 152 QAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp TTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 332 23333332221 1356789999999999999998877754
No 167
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.71 E-value=1.1e-08 Score=110.63 Aligned_cols=145 Identities=17% Similarity=0.194 Sum_probs=82.5
Q ss_pred CEEEeCCCCCChHHHHhHHh------CCCeeeecCCCCCCCCcc--cceeeE----------------------------
Q 004126 1 MCHIFFVIMTGKSTLLNHLF------GTNFREMDAFKGRSQTTK--GIWMAR---------------------------- 44 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf------Gtkfsims~~~~r~QTTr--Giw~~i---------------------------- 44 (772)
+|+|+|++|+|||||||.|. |.++.+.+. .+++++ |.+.+.
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~---d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV---DPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE---CGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE---cCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 48999999999999999998 567777763 344443 111110
Q ss_pred ---------ecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHH-HHHHHHHHH
Q 004126 45 ---------CAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKP-LLKTVFQVM 114 (772)
Q Consensus 45 ---------~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~-lLktv~evn 114 (772)
+...+.+++|+||+|+..++ . .....+|++++.+.. +. +.... +.+.+.+
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~-------~------~v~~~~d~vl~v~d~---~~--~~~~~~i~~~i~~-- 193 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSE-------T------AVADLTDFFLVLMLP---GA--GDELQGIKKGIFE-- 193 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCH-------H------HHHTTSSEEEEEECS---CC--------CCTTHHH--
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcch-------h------hHHhhCCEEEEEEcC---CC--cccHHHHHHHHhc--
Confidence 11146799999999997221 1 113688988765532 21 11100 1011122
Q ss_pred HhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHH----------h-hcCCCCCCccCCCchhhHHHHHhh
Q 004126 115 MRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI----------W-DSVPKPQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 115 l~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i----------w-~~i~kpsa~~~~~l~dlf~~~~~~ 176 (772)
.+.++|+||+|+.+.........+.+... | ..+...|++.+.+++++++.+...
T Consensus 194 --------~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 194 --------LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp --------HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred --------cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 34578889999754332221112222211 2 234556788888888888776543
No 168
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.71 E-value=1.1e-08 Score=99.08 Aligned_cols=153 Identities=16% Similarity=0.067 Sum_probs=83.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|+|||||+|+|.+..|... ...|+-........ .....+.++||||...- +. ....
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-~~---------~~~~ 74 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDCFPEN-----YVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-DN---------VRPL 74 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCSS-----CCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-TT---------TGGG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCC-----CCCccceeEEEEEEECCEEEEEEEEECCCChhh-hh---------hHHh
Confidence 68999999999999999999888521 11122111111111 22357899999996421 11 1122
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh------------chH-HHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE------------NLE-PVLRE 146 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e------------~l~-~~l~~ 146 (772)
.+..+|++|+.+...+. .. -..+.+...+. ++-+. ...|+++|.||.|+.+.. .+. +...+
T Consensus 75 ~~~~~~~~i~v~d~~~~---~s-~~~~~~~~~~~-i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 148 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRP---ET-LDSVLKKWKGE-IQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 148 (184)
T ss_dssp GCTTCSEEEEEEETTCH---HH-HHHHHHTHHHH-HHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hcCCCcEEEEEEECCCH---HH-HHHHHHHHHHH-HHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH
Confidence 45789999776543221 10 01111111110 11111 468999999999975321 111 12222
Q ss_pred HHHHHh-hcCCCCCCc-cCCCchhhHHHHHh
Q 004126 147 DIQKIW-DSVPKPQAH-METPLSEFFNVEVV 175 (772)
Q Consensus 147 ~l~~iw-~~i~kpsa~-~~~~l~dlf~~~~~ 175 (772)
....+. ..+.+.|+. .+.+++++|+....
T Consensus 149 ~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~ 179 (184)
T 1m7b_A 149 MAKQIGAATYIECSALQSENSVRDIFHVATL 179 (184)
T ss_dssp HHHHHTCSEEEECBTTTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEeeecCCCcCHHHHHHHHHH
Confidence 222232 246677887 57789999887654
No 169
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.71 E-value=1.7e-09 Score=118.53 Aligned_cols=140 Identities=11% Similarity=0.016 Sum_probs=77.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCC------eeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN------FREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQ 75 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk------fsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k 75 (772)
|+++|.+|+|||||+|+|+|.. ...++ ..+.||++....... ..+.++||||+..+..- ..++..
T Consensus 163 i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~---~~~gtT~~~~~~~~~---~~~~liDtPG~~~~~~~---~~~l~~ 233 (368)
T 3h2y_A 163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTS---HFPGTTLDLIDIPLD---EESSLYDTPGIINHHQM---AHYVGK 233 (368)
T ss_dssp EEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEE---CCC----CEEEEESS---SSCEEEECCCBCCTTSG---GGGSCH
T ss_pred EEEecCCCCChhHHHHHHHhhhccccccceecC---CCCCeecceEEEEec---CCeEEEeCCCcCcHHHH---HHHhhH
Confidence 6899999999999999999963 33344 468899998775543 34899999999755321 121111
Q ss_pred H---HHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHh
Q 004126 76 S---ALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 152 (772)
Q Consensus 76 ~---alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw 152 (772)
. ..+.....+.+++.+...+ ....+ +...+..+ ...+.|+++|+++.|......++.....+-+.+-
T Consensus 234 ~~l~~~~~~~~i~~~~~~l~~~~-~~~~g-~l~~~d~l--------~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g 303 (368)
T 3h2y_A 234 QSLKLITPTKEIKPMVFQLNEEQ-TLFFS-GLARFDYV--------SGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAG 303 (368)
T ss_dssp HHHHHHSCSSCCCCEEEEECTTE-EEEET-TTEEEEEE--------ESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBT
T ss_pred HHHHHhccccccCceEEEEcCCC-EEEEc-ceEEEEEe--------cCCCceEEEEecCccccccccHHHHHHHHHHHhC
Confidence 1 2233455665554443210 00011 11011111 1257899999999998766666544433332222
Q ss_pred hcCCCCCC
Q 004126 153 DSVPKPQA 160 (772)
Q Consensus 153 ~~i~kpsa 160 (772)
..+.+|++
T Consensus 304 ~~l~p~~~ 311 (368)
T 3h2y_A 304 DLLSPPTP 311 (368)
T ss_dssp TTBCSSCH
T ss_pred CccCCCch
Confidence 34566654
No 170
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.70 E-value=3.7e-08 Score=108.04 Aligned_cols=143 Identities=12% Similarity=0.064 Sum_probs=92.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|+|+|.+++|||||+|+|.. ..+|.++-.......+.++.++||||.. +| .+....++
T Consensus 24 i~iiG~~d~GKSTL~~~L~~------------~giTi~~~~~~~~~~~~~i~iiDtPGh~---------~f-~~~~~~~~ 81 (370)
T 2elf_A 24 VAIIGTEKSGRTSLAANLGK------------KGTSSDITMYNNDKEGRNMVFVDAHSYP---------KT-LKSLITAL 81 (370)
T ss_dssp EEEEESTTSSHHHHHHTTSE------------EEEESSSEEEEECSSSSEEEEEECTTTT---------TC-HHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh------------CCEEEEeeEEEEecCCeEEEEEECCChH---------HH-HHHHHHHH
Confidence 78999999999999999981 2344444444555567889999999964 12 23445567
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccE-EEEEe-CCCCCChhchHHHHHHHHHHHh-------
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTL-MFVIR-DKTRTPLENLEPVLREDIQKIW------- 152 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~l-lfVIr-d~d~t~~e~l~~~l~~~l~~iw------- 152 (772)
..+|++|+.+. +.|... .....+..+.. ...|. ++|+| |+|+ +.+.++.. .+.+..+.
T Consensus 82 ~~aD~ailVvd--~~g~~~-qt~e~~~~~~~--------~~i~~~ivvvNNK~Dl-~~~~~~~~-~~~i~~~l~~~~~~~ 148 (370)
T 2elf_A 82 NISDIAVLCIP--PQGLDA-HTGECIIALDL--------LGFKHGIIALTRSDST-HMHAIDEL-KAKLKVITSGTVLQD 148 (370)
T ss_dssp HTCSEEEEEEC--TTCCCH-HHHHHHHHHHH--------TTCCEEEEEECCGGGS-CHHHHHHH-HHHHHHHTTTSTTTT
T ss_pred HHCCEEEEEEc--CCCCcH-HHHHHHHHHHH--------cCCCeEEEEEEeccCC-CHHHHHHH-HHHHHHHHHhcCCCc
Confidence 89999988775 333211 11112222222 34454 89999 9999 65544322 22222221
Q ss_pred hcCCC--CCCcc---CCCchhhHHHHHhhcCC
Q 004126 153 DSVPK--PQAHM---ETPLSEFFNVEVVALSS 179 (772)
Q Consensus 153 ~~i~k--psa~~---~~~l~dlf~~~~~~Lph 179 (772)
..+.+ .|+.. +.+++++++.....+|.
T Consensus 149 ~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 149 WECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp CEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred eEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 13556 89999 99999999998887765
No 171
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.69 E-value=4.6e-08 Score=115.49 Aligned_cols=115 Identities=15% Similarity=0.054 Sum_probs=70.4
Q ss_pred EEEeCCCCCChHHHHhHHhCC--Cee----------eecC--CCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT--NFR----------EMDA--FKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt--kfs----------ims~--~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e 67 (772)
|+|+|.+|+|||||+|+|++. .+. +++. ....+++|.+.-.......+.++.++||||...
T Consensus 13 I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d----- 87 (693)
T 2xex_A 13 IGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD----- 87 (693)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS-----
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc-----
Confidence 789999999999999999952 221 1110 001345666665555555678999999999851
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
. . ..+..++..+|++|+.+...+ | .......+++.+.+ .+.|+++|+||+|+.+
T Consensus 88 f-~----~~~~~~l~~aD~~llVvDa~~-g-~~~~~~~~~~~~~~--------~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 88 F-T----VEVERSLRVLDGAVTVLDAQS-G-VEPQTETVWRQATT--------YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp C-C----HHHHHHHHHCSEEEEEEETTT-B-SCHHHHHHHHHHHH--------TTCCEEEEEECTTSTT
T ss_pred h-H----HHHHHHHHHCCEEEEEECCCC-C-CcHHHHHHHHHHHH--------cCCCEEEEEECCCccc
Confidence 1 1 234567788999988776533 1 11122333343333 5789999999999764
No 172
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.68 E-value=1.3e-07 Score=93.68 Aligned_cols=119 Identities=9% Similarity=-0.028 Sum_probs=68.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.|+|++|||||||+|+|.+..|...-.. ..+.++... ....+.++||||... -+ ..........+
T Consensus 15 i~~~G~~g~GKTsl~~~l~~~~~~~~~~~-~~~~~~~~~-------~~~~~~l~Dt~G~~~-~~-----~~~~~~~~~~~ 80 (218)
T 1nrj_B 15 IIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAADY-------DGSGVTLVDFPGHVK-LR-----YKLSDYLKTRA 80 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSCCCBCCC-SSCEEETTG-------GGSSCEEEECCCCGG-GT-----HHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCeeee-cCceEEEEe-------eCceEEEEECCCcHH-HH-----HHHHHHHHhcc
Confidence 68999999999999999999887642110 122222222 346889999999852 11 11122222233
Q ss_pred hcccEEEEeeccc-cccccccCCHHHHHHHHHHHH--hhcCCCCccEEEEEeCCCCCChh
Q 004126 82 AVSDIVLINMWCH-DIGREQAANKPLLKTVFQVMM--RLFSPRKTTLMFVIRDKTRTPLE 138 (772)
Q Consensus 82 a~sDvliiNl~~~-dig~~~~~n~~lLktv~evnl--~lf~~~k~~llfVIrd~d~t~~e 138 (772)
..+|++|+.+... +.. .-..+.+.+.++.- ....+...|+++|.||+|+.+..
T Consensus 81 ~~~~~~i~v~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPK----KLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp GGEEEEEEEEETTSCTT----CCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ccCCEEEEEEECCCChH----HHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 4588887766543 221 11112222222211 11123578999999999986543
No 173
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.68 E-value=4.2e-08 Score=108.30 Aligned_cols=115 Identities=12% Similarity=0.076 Sum_probs=68.9
Q ss_pred EEEeCCCCCChHHHHhHHhCC--------Cee---eecCC--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT--------NFR---EMDAF--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGED 68 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt--------kfs---ims~~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~ 68 (772)
|+|+|.+++|||||+|+|.+. .|. .++.. .....+|...-..........+.++||||..
T Consensus 14 I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~------- 86 (405)
T 2c78_A 14 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA------- 86 (405)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG-------
T ss_pred EEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH-------
Confidence 789999999999999999983 221 12210 0011223333222233456789999999964
Q ss_pred ccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCcc-EEEEEeCCCCCC
Q 004126 69 DTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LMFVIRDKTRTP 136 (772)
Q Consensus 69 ~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~-llfVIrd~d~t~ 136 (772)
+| .+....++..+|++|+.+...+ |. .......+..+.+ ...| +++|+||+|+.+
T Consensus 87 --~f-~~~~~~~~~~aD~~ilVvda~~-g~-~~qt~~~l~~~~~--------~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 87 --DY-IKNMITGAAQMDGAILVVSAAD-GP-MPQTREHILLARQ--------VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp --GG-HHHHHHHHTTCSSEEEEEETTT-CC-CHHHHHHHHHHHH--------TTCCCEEEEEECGGGCC
T ss_pred --HH-HHHHHHHHHHCCEEEEEEECCC-CC-cHHHHHHHHHHHH--------cCCCEEEEEEECccccC
Confidence 23 2345566889999988776533 21 1111222222222 3556 899999999874
No 174
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.67 E-value=3.7e-09 Score=121.37 Aligned_cols=154 Identities=15% Similarity=0.107 Sum_probs=99.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecC-CCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG-IEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~-~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
|+|+|.+|+|||||||+|.+.++.... .+.+|.++-...... ....+.|+||||-.. -.. . ....
T Consensus 7 V~IvG~~~vGKTSLl~~L~~~~~~~~~----~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~-f~~-~--------~~~~ 72 (537)
T 3izy_P 7 VTIMGHVDHGKTTLLDKLRKTQVAAME----AGGITQHIGAFLVSLPSGEKITFLDTPGHAA-FSA-M--------RARG 72 (537)
T ss_dssp CEEEESTTTTHHHHHHHHHHHHHHHSS----SCCBCCCTTSCCBCSSCSSCCBCEECSSSCC-TTT-S--------BBSS
T ss_pred EEEECCCCCCHHHHHHHHhCCCccccc----CCceeEEEeEEEEEeCCCCEEEEEECCChHH-HHH-H--------HHHH
Confidence 789999999999999999999988653 466777776655554 345899999999531 111 1 1123
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC--hhchHHHHHHHHH--HHhh---
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP--LENLEPVLREDIQ--KIWD--- 153 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~--~e~l~~~l~~~l~--~iw~--- 153 (772)
+..+|++|+.+...+ |. .......++.+.. ...|+++|+||+|+.+ .+.+...+.+.-. .-|.
T Consensus 73 ~~~aD~vILVVDa~d-g~-~~qt~e~l~~~~~--------~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~ 142 (537)
T 3izy_P 73 TQVTDIVILVVAADD-GV-MKQTVESIQHAKD--------AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDV 142 (537)
T ss_dssp SBSBSSCEEECBSSS-CC-CHHHHHHHHHHHT--------TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSE
T ss_pred HccCCEEEEEEECCC-Cc-cHHHHHHHHHHHH--------cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCc
Confidence 567999988775543 21 1111222222222 5678999999998742 2333333322100 0021
Q ss_pred cCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 154 SVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
.+.+.|+..+.+++++|+.....++.
T Consensus 143 ~iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 143 QAVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp EECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCchhHHHHHHHhhhc
Confidence 46789999999999999988776553
No 175
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.63 E-value=4.9e-08 Score=97.19 Aligned_cols=153 Identities=16% Similarity=0.062 Sum_probs=84.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec--CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA--GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~--~~~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|.|+|.+|||||||+|+|.+..|..- ...|+......... .....+.++||||...- +. ....
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-~~---------~~~~ 95 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKDCFPEN-----YVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-DN---------VRPL 95 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCSS-----CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG-TT---------TGGG
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCC-----cCCccceeEEEEEEECCEEEEEEEEeCCCcHhh-hH---------HHHh
Confidence 78999999999999999999988521 11222111111111 22357899999996521 11 1122
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh------------chH-HHHHH
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE------------NLE-PVLRE 146 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e------------~l~-~~l~~ 146 (772)
.+..+|++|+.+...+.. . -..+.+...+. ++-+. ...|+++|.||+|+.+.. .+. +...+
T Consensus 96 ~~~~~d~~ilv~D~~~~~---s-~~~~~~~~~~~-i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPE---T-LDSVLKKWKGE-IQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp GCTTCSEEEEEEETTCHH---H-HHHHHHTHHHH-HHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred hccCCCEEEEEEECCCHH---H-HHHHHHHHHHH-HHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence 457899988765433211 0 01111111111 11111 468999999999975321 111 11222
Q ss_pred HHHHHh-hcCCCCCCc-cCCCchhhHHHHHh
Q 004126 147 DIQKIW-DSVPKPQAH-METPLSEFFNVEVV 175 (772)
Q Consensus 147 ~l~~iw-~~i~kpsa~-~~~~l~dlf~~~~~ 175 (772)
....+. ..+...|+. .+.+++++|+....
T Consensus 170 ~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 170 MAKQIGAATYIECSALQSENSVRDIFHVATL 200 (205)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeeccCCcCHHHHHHHHHH
Confidence 222222 245677887 56789999887654
No 176
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.62 E-value=9.2e-08 Score=106.63 Aligned_cols=151 Identities=13% Similarity=0.022 Sum_probs=83.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecC-------CCCCCCCcccce----------------------eeEecCCCCcE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDA-------FKGRSQTTKGIW----------------------MARCAGIEPCT 52 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~-------~~~r~QTTrGiw----------------------~~i~~~~~~qi 52 (772)
|+|+|.+++|||||+|+|++..-.+.+. ...++.||++.+ ..........+
T Consensus 27 i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~ 106 (434)
T 1zun_B 27 FLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKF 106 (434)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEE
T ss_pred EEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCceE
Confidence 6899999999999999998765222211 112445553322 11223345679
Q ss_pred EEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCC
Q 004126 53 LIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 132 (772)
Q Consensus 53 l~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~ 132 (772)
.++||||.. +|. +.....++.+|++|+.+...+ |. .......+..+.. . ..+++++|+||+
T Consensus 107 ~iiDtpGh~---------~f~-~~~~~~~~~aD~~ilVvDa~~-g~-~~qt~~~l~~~~~-----~--~~~~iIvviNK~ 167 (434)
T 1zun_B 107 IIADTPGHE---------QYT-RNMATGASTCDLAIILVDARY-GV-QTQTRRHSYIASL-----L--GIKHIVVAINKM 167 (434)
T ss_dssp EEEECCCSG---------GGH-HHHHHHHTTCSEEEEEEETTT-CS-CHHHHHHHHHHHH-----T--TCCEEEEEEECT
T ss_pred EEEECCChH---------HHH-HHHHHHHhhCCEEEEEEECCC-CC-cHHHHHHHHHHHH-----c--CCCeEEEEEEcC
Confidence 999999942 232 233456789999988776533 11 1111111222211 1 234699999999
Q ss_pred CCCC--hhchH---HHHHHHHHHHh-----hcCCCCCCccCCCchhhHH
Q 004126 133 TRTP--LENLE---PVLREDIQKIW-----DSVPKPQAHMETPLSEFFN 171 (772)
Q Consensus 133 d~t~--~e~l~---~~l~~~l~~iw-----~~i~kpsa~~~~~l~dlf~ 171 (772)
|+.+ .+.+. +.+.+.++.+- ..+.+.|+..+.++.++|+
T Consensus 168 Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 168 DLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 9865 22222 22333222221 2356789999999998765
No 177
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.57 E-value=4.5e-08 Score=110.12 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=87.8
Q ss_pred EEEeCCCCCChHHHHhHHhCC--Cee----------------------ee-cCC--CCCCCCcccceeeEecCCCCcEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT--NFR----------------------EM-DAF--KGRSQTTKGIWMARCAGIEPCTLI 54 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt--kfs----------------------im-s~~--~~r~QTTrGiw~~i~~~~~~qil~ 54 (772)
|+|+|.+|+|||||+|+|.+. .|. ++ +.. .....+|.++-.........++.|
T Consensus 10 i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~i 89 (458)
T 1f60_A 10 VVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTV 89 (458)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEE
Confidence 789999999999999999874 221 11 100 000123333333334456678999
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeecccccccc-----ccCCHHHHHHHHHHHHhhcCCCC-ccEEEE
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGRE-----QAANKPLLKTVFQVMMRLFSPRK-TTLMFV 128 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~-----~~~n~~lLktv~evnl~lf~~~k-~~llfV 128 (772)
+||||-. +| .+....+++.+|++|+.+...+--.. .+.....+..+.. .. +++++|
T Consensus 90 iDtPGh~---------~f-~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--------~~v~~iivv 151 (458)
T 1f60_A 90 IDAPGHR---------DF-IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--------LGVRQLIVA 151 (458)
T ss_dssp EECCCCT---------TH-HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--------TTCCEEEEE
T ss_pred EECCCcH---------HH-HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--------cCCCeEEEE
Confidence 9999932 23 34566778999999887754321000 0011111111111 23 459999
Q ss_pred EeCCCCCC--hhch---HHHHHHHHHHH-h----hcCCCCCCccCCCchhhHH
Q 004126 129 IRDKTRTP--LENL---EPVLREDIQKI-W----DSVPKPQAHMETPLSEFFN 171 (772)
Q Consensus 129 Ird~d~t~--~e~l---~~~l~~~l~~i-w----~~i~kpsa~~~~~l~dlf~ 171 (772)
+||+|+.+ .+.+ .+.+.+.+..+ + ..+.+.|++.+.++.++.+
T Consensus 152 iNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~ 204 (458)
T 1f60_A 152 VNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT 204 (458)
T ss_dssp EECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCS
T ss_pred EEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccc
Confidence 99999863 3332 23344444433 2 2467889999999877643
No 178
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.57 E-value=4.5e-08 Score=108.39 Aligned_cols=85 Identities=15% Similarity=0.026 Sum_probs=50.1
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC-----------------CcEEEEecCCCCCcC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE-----------------PCTLIMDLEGTDGRE 64 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~-----------------~qil~lDteG~~s~e 64 (772)
|+|||+||+|||||+|+|.|.++. ++ ..++||.+...|....++ .++.|+||||+.. .
T Consensus 25 vgIVG~pnvGKSTL~n~Ltg~~~~-~~---~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~-~ 99 (396)
T 2ohf_A 25 IGIVGLPNVGKSTFFNVLTNSQAS-AE---NFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK-G 99 (396)
T ss_dssp EEEECCSSSSHHHHHHHHHC-----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred EEEECCCCCCHHHHHHHHHCCCcc-cc---CCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc-c
Confidence 789999999999999999999983 33 579999988888776532 3599999999973 2
Q ss_pred CCCCccHHHHHHHHHHhhcccEEEEeecc
Q 004126 65 RGEDDTAFEKQSALFALAVSDIVLINMWC 93 (772)
Q Consensus 65 r~e~~~~fe~k~alfALa~sDvliiNl~~ 93 (772)
+.+ +.-+....+..+..+|++++.+.+
T Consensus 100 as~--~~glg~~~l~~ir~aD~Il~VvD~ 126 (396)
T 2ohf_A 100 AHN--GQGLGNAFLSHISACDGIFHLTRA 126 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC
T ss_pred cch--hhHHHHHHHHHHHhcCeEEEEEec
Confidence 211 111222456678899999887765
No 179
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.56 E-value=7.4e-08 Score=106.21 Aligned_cols=158 Identities=14% Similarity=0.100 Sum_probs=89.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCC-------e---eeecCCC--CCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN-------F---REMDAFK--GRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDD 69 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk-------f---sims~~~--~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~ 69 (772)
|+|+|.+++|||||+|+|.+.. | +.++... .....|.+.-..........+.|+||||..
T Consensus 6 I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~-------- 77 (397)
T 1d2e_A 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA-------- 77 (397)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH--------
T ss_pred EEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH--------
Confidence 6899999999999999999842 1 1222100 011123332111233456789999999963
Q ss_pred cHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCcc-EEEEEeCCCCCC-hhch---HHHH
Q 004126 70 TAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LMFVIRDKTRTP-LENL---EPVL 144 (772)
Q Consensus 70 ~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~-llfVIrd~d~t~-~e~l---~~~l 144 (772)
+|.. ....++..+|++|+.+...+ |. .......+..+.. ...| +++|+||+|+.+ .+.+ .+.+
T Consensus 78 -~f~~-~~~~~~~~aD~~ilVvda~~-g~-~~qt~e~l~~~~~--------~~vp~iivviNK~Dl~~~~~~~~~~~~~~ 145 (397)
T 1d2e_A 78 -DYVK-NMITGTAPLDGCILVVAAND-GP-MPQTREHLLLARQ--------IGVEHVVVYVNKADAVQDSEMVELVELEI 145 (397)
T ss_dssp -HHHH-HHHHTSSCCSEEEEEEETTT-CS-CHHHHHHHHHHHH--------TTCCCEEEEEECGGGCSCHHHHHHHHHHH
T ss_pred -HHHH-HHHhhHhhCCEEEEEEECCC-CC-CHHHHHHHHHHHH--------cCCCeEEEEEECcccCCCHHHHHHHHHHH
Confidence 3433 45667889999988776533 21 1111222222222 3556 789999999874 3322 2233
Q ss_pred HHHHHHH-h----hcCCCCCCccCCC----------chhhHHHHHhhcCC
Q 004126 145 REDIQKI-W----DSVPKPQAHMETP----------LSEFFNVEVVALSS 179 (772)
Q Consensus 145 ~~~l~~i-w----~~i~kpsa~~~~~----------l~dlf~~~~~~Lph 179 (772)
.+.+... + -.+.+.|+..+.+ +.++++.....+|.
T Consensus 146 ~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 146 RELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 3333322 1 1345567766443 66777776666654
No 180
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.56 E-value=3.1e-07 Score=106.77 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=89.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCee---------eecCCCCCCCCccccee-----eE-e---cCCCCcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFR---------EMDAFKGRSQTTKGIWM-----AR-C---AGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfs---------ims~~~~r~QTTrGiw~-----~i-~---~~~~~qil~lDteG~~s~ 63 (772)
|+|+|..++|||||+|+|++..-. +++.. ..-.+||+-+ .+ . ......+.++||||..
T Consensus 9 I~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~--~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~-- 84 (600)
T 2ywe_A 9 FCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTL--DVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV-- 84 (600)
T ss_dssp EEEECC--CCHHHHHHHHHHHHTC-------------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG--
T ss_pred EEEECCCCCCHHHHHHHHHhccCCcccccccccccccc--hhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH--
Confidence 689999999999999999863111 11100 0001233221 11 1 1123577899999974
Q ss_pred CCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHH
Q 004126 64 ERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 143 (772)
Q Consensus 64 er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~ 143 (772)
+|. .....+++.+|.+|+.+...+-- .......+....+ ...|+++|+||+|+.+.+ ....
T Consensus 85 -------dF~-~ev~r~l~~aD~aILVVDa~~gv--~~qt~~~~~~a~~--------~~ipiIvviNKiDl~~a~-~~~v 145 (600)
T 2ywe_A 85 -------DFS-YEVSRALAACEGALLLIDASQGI--EAQTVANFWKAVE--------QDLVIIPVINKIDLPSAD-VDRV 145 (600)
T ss_dssp -------GGH-HHHHHHHHTCSEEEEEEETTTBC--CHHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC-HHHH
T ss_pred -------hHH-HHHHHHHHhCCEEEEEEECCCCc--cHHHHHHHHHHHH--------CCCCEEEEEeccCccccC-HHHH
Confidence 121 13345678899998877653311 1111222222222 578899999999985432 2221
Q ss_pred HHHHHHHH----hhcCCCCCCccCCCchhhHHHHHhhcCCCcc
Q 004126 144 LREDIQKI----WDSVPKPQAHMETPLSEFFNVEVVALSSFEE 182 (772)
Q Consensus 144 l~~~l~~i----w~~i~kpsa~~~~~l~dlf~~~~~~Lph~~~ 182 (772)
.+.+... ...+...|+..+.+++++|+.....+|....
T Consensus 146 -~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~ 187 (600)
T 2ywe_A 146 -KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKG 187 (600)
T ss_dssp -HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred -HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccccc
Confidence 2223222 1247788999999999999999999997653
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.55 E-value=2.6e-07 Score=109.10 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=66.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCCee------------eecCC--CCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFR------------EMDAF--KGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfs------------ims~~--~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e 67 (772)
|+|+|.+++|||||+|+|+..... +++.. .....+|.+.-..........+.++||||...
T Consensus 15 I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d----- 89 (691)
T 1dar_A 15 IGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD----- 89 (691)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT-----
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc-----
Confidence 789999999999999999842111 11100 00122333333333333567899999999741
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
| ...+..++..+|.+|+.+...+-- ......+++.+.+ .+.|+++|+||+|...
T Consensus 90 ----f-~~~~~~~l~~aD~~ilVvDa~~g~--~~~t~~~~~~~~~--------~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 90 ----F-TIEVERSMRVLDGAIVVFDSSQGV--EPQSETVWRQAEK--------YKVPRIAFANKMDKTG 143 (691)
T ss_dssp ----C-HHHHHHHHHHCSEEEEEEETTTCS--CHHHHHHHHHHHH--------TTCCEEEEEECTTSTT
T ss_pred ----h-HHHHHHHHHHCCEEEEEEECCCCc--chhhHHHHHHHHH--------cCCCEEEEEECCCccc
Confidence 1 234566778899998877653311 1122223333333 5788999999999753
No 182
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.54 E-value=1.5e-07 Score=109.38 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=90.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEec------------------CCCCcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA------------------GIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~------------------~~~~qil~lDteG~~s~ 63 (772)
|+|+|.+++|||||+|+|.|+.+..-. .+..|..+-....+ .....+.|+||||...-
T Consensus 8 V~IvGh~d~GKTTLl~~L~~~~v~~~e----~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 8 VSVLGHVDHGKTTLLDHIRGSAVASRE----AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHSCC--------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred EEEECCCCCcHHHHHHHHhcccCcccc----CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 789999999999999999998764322 11233332111111 11235999999996421
Q ss_pred CCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh------
Q 004126 64 ERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL------ 137 (772)
Q Consensus 64 er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~------ 137 (772)
...- ..++..+|++|+.+...+ |. .......++.+.. ...|+++|+||+|+.+.
T Consensus 84 -~~~~---------~r~~~~aD~aILVvDa~~-Gv-~~qT~e~l~~l~~--------~~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 84 -TTLR---------KRGGALADLAILIVDINE-GF-KPQTQEALNILRM--------YRTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp -TTSB---------CSSSBSCSEEEEEEETTT-CC-CHHHHHHHHHHHH--------TTCCEEEEEECGGGSTTCCCCTT
T ss_pred -HHHH---------HHHHhhCCEEEEEEECCC-Cc-cHhHHHHHHHHHH--------cCCeEEEEecccccccccccccC
Confidence 1110 124678999988776543 21 1122233333333 67899999999997531
Q ss_pred -----------hchHHHHHH----HHHHH---------hh---------cCCCCCCccCCCchhhHHHHHhhcCC
Q 004126 138 -----------ENLEPVLRE----DIQKI---------WD---------SVPKPQAHMETPLSEFFNVEVVALSS 179 (772)
Q Consensus 138 -----------e~l~~~l~~----~l~~i---------w~---------~i~kpsa~~~~~l~dlf~~~~~~Lph 179 (772)
+.+.+.+.+ ..+.+ |. .+.+.|+.++.+++++++.....+|.
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 112221111 11111 10 35678999999999999998876653
No 183
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.54 E-value=5.1e-08 Score=107.92 Aligned_cols=86 Identities=14% Similarity=0.034 Sum_probs=63.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC-----------------CcEEEEecCCCCCcC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE-----------------PCTLIMDLEGTDGRE 64 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~-----------------~qil~lDteG~~s~e 64 (772)
|+|||+||+|||||+|+|.|.+++.++ +.|+||+....|.....+ .++.++||||+...-
T Consensus 23 vgiVG~pnaGKSTL~n~Ltg~~~a~~~---~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 23 TGIVGMPNVGKSTFFRAITKSVLGNPA---NYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp EEEEECSSSSHHHHHHHHHHSTTTSTT---CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccc---CCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 789999999999999999999986555 589999999988877654 368999999987322
Q ss_pred CCCCccHHHHHHHHHHhhcccEEEEeecc
Q 004126 65 RGEDDTAFEKQSALFALAVSDIVLINMWC 93 (772)
Q Consensus 65 r~e~~~~fe~k~alfALa~sDvliiNl~~ 93 (772)
.. ++.+....+..+..+|.++..+.+
T Consensus 100 s~---~e~L~~~fl~~ir~~d~il~Vvd~ 125 (392)
T 1ni3_A 100 ST---GVGLGNAFLSHVRAVDAIYQVVRA 125 (392)
T ss_dssp CS---SSSSCHHHHHHHTTCSEEEEEEEC
T ss_pred cH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 111112334567789988776654
No 184
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.53 E-value=1.8e-07 Score=95.68 Aligned_cols=165 Identities=10% Similarity=-0.021 Sum_probs=91.1
Q ss_pred CEEEeCCCCCChHHHHhHHh-----CCCeeeecCCCCCCC----------------Ccccceee-------Eec------
Q 004126 1 MCHIFFVIMTGKSTLLNHLF-----GTNFREMDAFKGRSQ----------------TTKGIWMA-------RCA------ 46 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf-----Gtkfsims~~~~r~Q----------------TTrGiw~~-------i~~------ 46 (772)
++.++|++|||||||+|+|. |.++.+++. -+| +++.+... +++
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~---D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL---DTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC---CSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC---CCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 36789999999999999999 999999984 344 23322100 000
Q ss_pred -------------CCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHH
Q 004126 47 -------------GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV 113 (772)
Q Consensus 47 -------------~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~ev 113 (772)
..+.+++++||||..+.... ... ......+++. ++++..+...... ....+.......
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~---~~l-~~~~~~~~~~-~~iv~vvD~~~~~----~~~~~~~~~~~~ 163 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLF---HEF-GVRLMENLPY-PLVVYISDPEILK----KPNDYCFVRFFA 163 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHH---SHH-HHHHHHTSSS-CEEEEEECGGGCC----SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchhhh---hhh-HHHHHHHHhh-ceEEeccchhhhc----CHHHHHHHHHHH
Confidence 01358999999998632110 111 1112234566 7776655432211 111122111100
Q ss_pred HHhhcCCCCccEEEEEeCCCCCChhch---HHHHH------HH------------------HHHH--hhcCCCCCCccCC
Q 004126 114 MMRLFSPRKTTLMFVIRDKTRTPLENL---EPVLR------ED------------------IQKI--WDSVPKPQAHMET 164 (772)
Q Consensus 114 nl~lf~~~k~~llfVIrd~d~t~~e~l---~~~l~------~~------------------l~~i--w~~i~kpsa~~~~ 164 (772)
.......+.|+++|+||+|..+...+ ++.+. +. ++.+ ...+.+.|+..+.
T Consensus 164 -~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~ 242 (262)
T 1yrb_A 164 -LLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTRE 242 (262)
T ss_dssp -HHHHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCT
T ss_pred -HHHhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcc
Confidence 00001135788999999997654322 22111 11 1121 1157788999999
Q ss_pred CchhhHHHHHhhcC
Q 004126 165 PLSEFFNVEVVALS 178 (772)
Q Consensus 165 ~l~dlf~~~~~~Lp 178 (772)
+++++++.....++
T Consensus 243 gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 243 GFEDLETLAYEHYC 256 (262)
T ss_dssp THHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc
Confidence 99999998766553
No 185
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.52 E-value=5.2e-07 Score=88.51 Aligned_cols=156 Identities=15% Similarity=-0.008 Sum_probs=83.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC--CCcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI--EPCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~--~~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|+|++|+|||||+|.|.|..|..... +..+.....+..... ...+.++||+|.... +. . ...
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~~~~~~~----~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~-~~-~--------~~~ 73 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNEFNLESK----STIGVEFATRSIQVDGKTIKAQIWDTAGQERY-RR-I--------TSA 73 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSCCCC-------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT-TC-C--------CHH
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEEEECCEEEEEEEEECCCchhh-hh-h--------hHH
Confidence 7899999999999999999998875431 221112222222222 235678999996522 11 1 112
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPKP 158 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~kp 158 (772)
....+|++++.....+..... .....++.+.+ ....+.|+++|++|+|+....... ..........--.+...
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~-----~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~ 147 (199)
T 2f9l_A 74 YYRGAVGALLVYDIAKHLTYE-NVERWLKELRD-----HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIET 147 (199)
T ss_dssp HHTTCSEEEEEEETTCHHHHH-THHHHHHHHHH-----HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHhcCCEEEEEEECcCHHHHH-HHHHHHHHHHH-----hcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEE
Confidence 234678776644332221111 00111111111 122468899999999975433221 11111111111123457
Q ss_pred CCccCCCchhhHHHHHhhc
Q 004126 159 QAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 159 sa~~~~~l~dlf~~~~~~L 177 (772)
|++.+.++.++|+.....+
T Consensus 148 Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 148 SALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 8888999999998876554
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.52 E-value=5.1e-07 Score=100.71 Aligned_cols=175 Identities=13% Similarity=0.000 Sum_probs=74.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCC---CCCCCCcccceeeEecCC---CCcEEEEecCCCCCcCCCCC-ccHH--
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAF---KGRSQTTKGIWMARCAGI---EPCTLIMDLEGTDGRERGED-DTAF-- 72 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~---~~r~QTTrGiw~~i~~~~---~~qil~lDteG~~s~er~e~-~~~f-- 72 (772)
|+|||+.|+|||||||.|+|..+...+.. ....+|++-..++..... ...+-++||+|......... ....
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~ 113 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVID 113 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHH
Confidence 68999999999999999999987432210 011334432223332211 23578999999964322110 0010
Q ss_pred -HH-HH----------HHHHhhc--ccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChh
Q 004126 73 -EK-QS----------ALFALAV--SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 138 (772)
Q Consensus 73 -e~-k~----------alfALa~--sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e 138 (772)
.. +. +...+.+ ++++++-+-...-|... ....+++.+ . .+.++++|++|+|..+..
T Consensus 114 ~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~-~d~~~lk~L--------~-~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 114 YIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKP-LDIEFMKRL--------H-EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCH-HHHHHHHHH--------T-TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCH-HHHHHHHHH--------h-ccCcEEEEEEcccCccHH
Confidence 00 00 0001223 34454422211012111 111222222 1 378999999999976554
Q ss_pred chH---HHHHHHHHHHhhcCCCCCCccCCCchhhHHHHHhhcCCCccchhH
Q 004126 139 NLE---PVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEEL 186 (772)
Q Consensus 139 ~l~---~~l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~~~Lph~~~~~~~ 186 (772)
.+. +.+.+.+....-.+...++..+.+..+.|......+|+.......
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPfavv~s~~ 234 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNT 234 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------CCEEECC---
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCcceeecce
Confidence 444 455555554444566778888888888888888889988775543
No 187
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.50 E-value=1.3e-07 Score=100.05 Aligned_cols=57 Identities=23% Similarity=0.178 Sum_probs=37.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRE 64 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~e 64 (772)
|.++|.||+|||||+|+|.|.+...++ +.+.|||+...-.. ...+.++||||+..+.
T Consensus 123 v~~vG~~nvGKSsliN~l~~~~~~~~~---~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 123 ALIIGIPNVGKSTLINRLAKKNIAKTG---DRPGITTSQQWVKV---GKELELLDTPGILWPK 179 (282)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCCC---------------CCEEE---TTTEEEEECCCCCCSC
T ss_pred EEEEecCCCchHHHHHHHhcCceeecC---CCCCeeeeeEEEEe---CCCEEEEECcCcCCCC
Confidence 689999999999999999999876666 46789998753222 4589999999998543
No 188
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.50 E-value=4e-07 Score=92.35 Aligned_cols=158 Identities=14% Similarity=0.043 Sum_probs=86.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceee--EecC--CCCcEEEEecCCCCCcCCCCCccHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA--RCAG--IEPCTLIMDLEGTDGRERGEDDTAFEKQSA 77 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~--i~~~--~~~qil~lDteG~~s~er~e~~~~fe~k~a 77 (772)
|.|||.+|||||+|+|++.+-.|.. ..+.|-|+-.. .... ....+-++||+|-. +.. .+.
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~f~~------~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe---~~~-------~l~ 79 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDSFDN------TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE---RFR-------SLI 79 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCC----------------CEEEEEECSSCEEEEEEECCSCTT---TCG-------GGH
T ss_pred EEEECcCCcCHHHHHHHHHhCCCCC------CcCCccceEEEEEEEEecceEEEEEEEECCCch---hhh-------hHH
Confidence 7899999999999999999888853 23344443211 1111 22456799999964 221 122
Q ss_pred HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHH-HHHHHHHHHhhcCC
Q 004126 78 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP-VLREDIQKIWDSVP 156 (772)
Q Consensus 78 lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~-~l~~~l~~iw~~i~ 156 (772)
..-+..+|++|+.....+..... .+-+.+.++ .+ ......|+++|.||.|+.....+.. ...+....+--...
T Consensus 80 ~~~~~~a~~~ilv~di~~~~Sf~----~i~~~~~~i-~~-~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~ 153 (216)
T 4dkx_A 80 PSYIRDSAAAVVVYDITNVNSFQ----QTTKWIDDV-RT-ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFI 153 (216)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHH----THHHHHHHH-HH-HHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred HHHhccccEEEEEeecchhHHHH----HHHHHHHHH-HH-hcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeE
Confidence 23457889887755433221111 111111111 11 1225789999999999754433321 11122222212345
Q ss_pred CCCCccCCCchhhHHHHHhhcCCCc
Q 004126 157 KPQAHMETPLSEFFNVEVVALSSFE 181 (772)
Q Consensus 157 kpsa~~~~~l~dlf~~~~~~Lph~~ 181 (772)
..||..+.+++++|+.+...++...
T Consensus 154 e~SAktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 154 ETSAKAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp EEBTTTTBSHHHHHHHHHHHC----
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhhh
Confidence 6799999999999999888887543
No 189
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.50 E-value=6.2e-08 Score=106.20 Aligned_cols=83 Identities=20% Similarity=0.198 Sum_probs=58.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC-----------------CcEEEEecCCCCCcC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE-----------------PCTLIMDLEGTDGRE 64 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~-----------------~qil~lDteG~~s~e 64 (772)
|+|||.||+|||||+|+|.|.++.+ + ..+.||.+.-.|....++ .++.|+||||+....
T Consensus 5 I~IVG~pnvGKSTL~n~Lt~~~~~v-~---~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 5 CGIVGLPNVGKSTLFNALTKAGIEA-A---NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHTC----------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred EEEECCCCCCHHHHHHHHHCCCCcc-c---CCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 7899999999999999999998543 2 468899998888776654 579999999997221
Q ss_pred ---CCCCccHHHHHHHHHHhhcccEEEEeeccc
Q 004126 65 ---RGEDDTAFEKQSALFALAVSDIVLINMWCH 94 (772)
Q Consensus 65 ---r~e~~~~fe~k~alfALa~sDvliiNl~~~ 94 (772)
++-. ..| +..+..+|++++.+.+.
T Consensus 81 ~~~~gl~-~~f-----l~~ir~ad~il~VvD~~ 107 (363)
T 1jal_A 81 SKGEGLG-NKF-----LANIRETDAIGHVVRCF 107 (363)
T ss_dssp HHHGGGT-CCH-----HHHHHTCSEEEEEEECS
T ss_pred cccchHH-HHH-----HHHHHhcCeEEEEEecC
Confidence 1110 222 34578999998877653
No 190
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.50 E-value=4.1e-07 Score=105.71 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=87.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeee---------ecCCCCCCCCcccceee----Ee-----cCCCCcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFRE---------MDAFKGRSQTTKGIWMA----RC-----AGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsi---------ms~~~~r~QTTrGiw~~----i~-----~~~~~qil~lDteG~~s~ 63 (772)
|+|+|..++|||||+|+|++..-.+ ++.. ..--+||+-.. .. ......+-++||||..
T Consensus 7 I~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~--~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~-- 82 (599)
T 3cb4_D 7 FSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSM--DLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV-- 82 (599)
T ss_dssp EEEECCC----CCHHHHHHHHTTC----------------------------CEEEEEEECTTSCEEEEEEEECCCCG--
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcccccccccccccc--hhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch--
Confidence 6899999999999999998632111 1100 00012333221 11 1123578899999964
Q ss_pred CCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchHHH
Q 004126 64 ERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 143 (772)
Q Consensus 64 er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~~~ 143 (772)
+|. .....+++.+|.+|+.+...+-- .......+....+ ...|+++|+||+|+.+.+ ....
T Consensus 83 -------dF~-~ev~~~l~~aD~aILVVDa~~gv--~~qt~~~~~~~~~--------~~ipiIvViNKiDl~~a~-~~~v 143 (599)
T 3cb4_D 83 -------DFS-YEVSRSLAACEGALLVVDAGQGV--EAQTLANCYTAME--------MDLEVVPVLNKIDLPAAD-PERV 143 (599)
T ss_dssp -------GGH-HHHHHHHHHCSEEEEEEETTTCC--CTHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC-HHHH
T ss_pred -------HHH-HHHHHHHHHCCEEEEEEECCCCC--CHHHHHHHHHHHH--------CCCCEEEeeeccCccccc-HHHH
Confidence 121 23445678899998877653311 1122222222222 567899999999986432 1211
Q ss_pred HHHHHHHHh----hcCCCCCCccCCCchhhHHHHHhhcCCCcc
Q 004126 144 LREDIQKIW----DSVPKPQAHMETPLSEFFNVEVVALSSFEE 182 (772)
Q Consensus 144 l~~~l~~iw----~~i~kpsa~~~~~l~dlf~~~~~~Lph~~~ 182 (772)
.+.+...+ ..+...|+..+.+++++|+.....+|...-
T Consensus 144 -~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~ 185 (599)
T 3cb4_D 144 -AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEG 185 (599)
T ss_dssp -HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred -HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCccc
Confidence 12222222 236778999999999999999999998653
No 191
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.48 E-value=3.2e-07 Score=94.77 Aligned_cols=56 Identities=11% Similarity=-0.004 Sum_probs=36.6
Q ss_pred CCccEEEEEeCCCCCChhchHHHHHHHHHHH-hhcCCCCCCccCCCchhhHHHHHhhc
Q 004126 121 RKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 121 ~k~~llfVIrd~d~t~~e~l~~~l~~~l~~i-w~~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
.+.|+++|.||+|+.+...++ ...+..... .-.+...|+..+.+++++|+.....+
T Consensus 197 ~~~piilV~NK~Dl~~~~~v~-~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 197 TKKPIVVVLTKCDEGVERYIR-DAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TTCCEEEEEECGGGBCHHHHH-HHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCEEEEEEcccccccHHHH-HHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999986544332 222222111 11355689999999999998776543
No 192
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.47 E-value=2e-07 Score=103.93 Aligned_cols=152 Identities=12% Similarity=0.085 Sum_probs=86.0
Q ss_pred EEEeCCCCCChHHHHhHHhCC--Cee-----------------------eecC--CCCCCCCcccceeeEecCCCCcEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT--NFR-----------------------EMDA--FKGRSQTTKGIWMARCAGIEPCTLI 54 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt--kfs-----------------------ims~--~~~r~QTTrGiw~~i~~~~~~qil~ 54 (772)
|+++|.+++|||||+|+|++. .|. +++. ....+.+|.+.-..........+.+
T Consensus 9 I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~i 88 (435)
T 1jny_A 9 LIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTI 88 (435)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEEEE
Confidence 689999999999999999874 232 0110 0012346666555555566789999
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccc------cCCHHHHHHHHHHHHhhcCCCCccEEEE
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQ------AANKPLLKTVFQVMMRLFSPRKTTLMFV 128 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~------~~n~~lLktv~evnl~lf~~~k~~llfV 128 (772)
+||||.. +|. +....++..+|++|+.+...+ |... ......+....+ ...+++++|
T Consensus 89 iDtpG~~---------~f~-~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~-------~~~~~iivv 150 (435)
T 1jny_A 89 IDAPGHR---------DFV-KNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT-------MGLDQLIVA 150 (435)
T ss_dssp CCCSSST---------THH-HHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH-------TTCTTCEEE
T ss_pred EECCCcH---------HHH-HHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH-------cCCCeEEEE
Confidence 9999953 232 345667889999998876654 3111 011111111111 123578999
Q ss_pred EeCCCCCC----hhc---hHHHHHHHHHHH-h----hcCCCCCCccCCCchhhHH
Q 004126 129 IRDKTRTP----LEN---LEPVLREDIQKI-W----DSVPKPQAHMETPLSEFFN 171 (772)
Q Consensus 129 Ird~d~t~----~e~---l~~~l~~~l~~i-w----~~i~kpsa~~~~~l~dlf~ 171 (772)
+||+|+.+ .+. +.+.+.+.+... | -.+.+.|+..+.++.+.++
T Consensus 151 iNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 151 VNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp EECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred EEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 99999865 222 223334433332 2 1356788999999887654
No 193
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.44 E-value=2.2e-07 Score=104.77 Aligned_cols=151 Identities=13% Similarity=0.061 Sum_probs=80.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCC--e----------------------e-eecCC--CCCCCCcccceeeEecCCCCcEEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN--F----------------------R-EMDAF--KGRSQTTKGIWMARCAGIEPCTLI 54 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk--f----------------------s-ims~~--~~r~QTTrGiw~~i~~~~~~qil~ 54 (772)
|+|+|..++|||||+|+|.+.. | + +++.. .....+|.++-......+...+.|
T Consensus 46 i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~i 125 (467)
T 1r5b_A 46 IVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSL 125 (467)
T ss_dssp EEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEE
Confidence 7899999999999999997521 1 1 11100 001224444433334445678999
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeecccccccc------ccCCHHHHHHHHHHHHhhcCCCCcc-EEE
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGRE------QAANKPLLKTVFQVMMRLFSPRKTT-LMF 127 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~------~~~n~~lLktv~evnl~lf~~~k~~-llf 127 (772)
+||||-. +|. +.....++.+|++|+.+...+ |.. .+.....+..... ...| +++
T Consensus 126 iDtPGh~---------~f~-~~~~~~~~~aD~~ilVvDa~~-g~~e~sf~~~~qt~e~l~~~~~--------~~vp~iiv 186 (467)
T 1r5b_A 126 LDAPGHK---------GYV-TNMINGASQADIGVLVISARR-GEFEAGFERGGQTREHAVLART--------QGINHLVV 186 (467)
T ss_dssp CCCCC---------------------TTSCSEEEEEEECST-THHHHTTSTTCCHHHHHHHHHH--------TTCSSEEE
T ss_pred EECCCcH---------HHH-HHHHhhcccCCEEEEEEeCCc-CccccccCCCCcHHHHHHHHHH--------cCCCEEEE
Confidence 9999963 121 233556789999988776533 100 0122222222222 3454 999
Q ss_pred EEeCCCCCC----hhc---hHHHHHHHHHHH-------hhcCCCCCCccCCCchhhHH
Q 004126 128 VIRDKTRTP----LEN---LEPVLREDIQKI-------WDSVPKPQAHMETPLSEFFN 171 (772)
Q Consensus 128 VIrd~d~t~----~e~---l~~~l~~~l~~i-------w~~i~kpsa~~~~~l~dlf~ 171 (772)
|+||+|+.+ .+. +.+.+.+.+... .-.+.+.|+..+.++.++|+
T Consensus 187 viNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 187 VINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp EEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred EEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 999999853 222 223344444333 12367889999999998874
No 194
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.44 E-value=4.9e-07 Score=111.05 Aligned_cols=156 Identities=14% Similarity=0.123 Sum_probs=89.8
Q ss_pred EEEeCCCCCChHHHHhHHhCCC----------eeeecCCCCCCCCccccee----eEecCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN----------FREMDAFKGRSQTTKGIWM----ARCAGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk----------fsims~~~~r~QTTrGiw~----~i~~~~~~qil~lDteG~~s~er~e 67 (772)
|+|+|.+++|||||+|+|.+.. +++++.. ...-|+|+-+ .........+.|+||||..
T Consensus 299 IvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~--~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe------ 370 (1289)
T 3avx_A 299 VGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNA--PEEKARGITINTSHVEYDTPTRHYAHVDCPGHA------ 370 (1289)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHSCC-----------------------CCSCEEEECSSCEEEEEECCCHH------
T ss_pred EEEEcCCCCCHHHHHHHHHhhhccccccccccccccccc--cccccCceeEEEEEEEEcCCCEEEEEEECCChH------
Confidence 7899999999999999999741 2233310 1112344422 1223356789999999953
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCcc-EEEEEeCCCCCCh-hch---HH
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LMFVIRDKTRTPL-ENL---EP 142 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~-llfVIrd~d~t~~-e~l---~~ 142 (772)
+|. +.....+..+|++|+.+...+ |. .......+..+.. ...| +++|+||+|+.+. +.+ .+
T Consensus 371 ---dF~-~~mi~gas~AD~aILVVDAtd-Gv-~~QTrEhL~ll~~--------lgIP~IIVVINKiDLv~d~e~le~i~e 436 (1289)
T 3avx_A 371 ---DYV-KNMITGAAQMDGAILVVAATD-GP-MPQTREHILLGRQ--------VGVPYIIVFLNKCDMVDDEELLELVEM 436 (1289)
T ss_dssp ---HHH-HHHHHTSCCCSEEEEEEETTT-CS-CTTHHHHHHHHHH--------HTCSCEEEEEECCTTCCCHHHHHHHHH
T ss_pred ---HHH-HHHHHHHhhCCEEEEEEcCCc-cC-cHHHHHHHHHHHH--------cCCCeEEEEEeecccccchhhHHHHHH
Confidence 343 445667889999998876644 21 1222223333322 2455 8899999998753 222 22
Q ss_pred HHHHHHHHH-h----hcCCCCCCccC--------CCchhhHHHHHhhcCC
Q 004126 143 VLREDIQKI-W----DSVPKPQAHME--------TPLSEFFNVEVVALSS 179 (772)
Q Consensus 143 ~l~~~l~~i-w----~~i~kpsa~~~--------~~l~dlf~~~~~~Lph 179 (772)
.+.+.+... + -.+.+.|+..+ .++.++|+.....+|.
T Consensus 437 Ei~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 437 EVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 333333332 1 13557788887 3578888888877764
No 195
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.44 E-value=3.5e-07 Score=99.77 Aligned_cols=60 Identities=22% Similarity=0.118 Sum_probs=29.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCC---CCCCCCcccceeeEecC-CC---CcEEEEecCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAF---KGRSQTTKGIWMARCAG-IE---PCTLIMDLEGTD 61 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~---~~r~QTTrGiw~~i~~~-~~---~qil~lDteG~~ 61 (772)
|+|||.+|+|||||+|+|||......+.. .....+|.++-...... .+ ..+.++||||..
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 68999999999999999999765432110 00112344332211111 11 268899999994
No 196
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.43 E-value=4.7e-08 Score=111.38 Aligned_cols=151 Identities=13% Similarity=0.172 Sum_probs=93.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHH
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 80 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfA 80 (772)
.|+|+|.+++|||||+|+|.+.++..-. .+-+|.++-......++..+.|+||||-..- ... ....
T Consensus 6 ~V~IvGhvd~GKTTLl~~L~~~~v~~~e----~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f-~~~---------~~~~ 71 (501)
T 1zo1_I 6 VVTIMGHVDHGKTSLLEYIRSTKVASGE----AGGITQHIGAYHVETENGMITFLDTPGHAAF-TSM---------RARG 71 (501)
T ss_dssp CEEEEESTTSSSHHHHHHHHHHHHSBTT----BCCCCCCSSCCCCCTTSSCCCEECCCTTTCC-TTS---------BCSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCcccc----CCCeeEeEEEEEEEECCEEEEEEECCCcHHH-HHH---------HHHH
Confidence 4899999999999999999998775321 2334544443334445678999999995311 110 0123
Q ss_pred hhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC--hhchHHHHHHH--HHHHhh---
Q 004126 81 LAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP--LENLEPVLRED--IQKIWD--- 153 (772)
Q Consensus 81 La~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~--~e~l~~~l~~~--l~~iw~--- 153 (772)
+..+|++|+.+...+ |. .......+..+.. ...|+++|+||+|+.+ .+.+.+.+.+. +..-|.
T Consensus 72 ~~~aD~aILVVda~~-g~-~~qT~e~l~~~~~--------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~ 141 (501)
T 1zo1_I 72 AQATDIVVLVVAADD-GV-MPQTIEAIQHAKA--------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGES 141 (501)
T ss_dssp SBSCSSEEEEEETTT-BS-CTTTHHHHHHHHH--------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSC
T ss_pred HhhCCEEEEEeeccc-Cc-cHHHHHHHHHHHh--------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCc
Confidence 678999988776533 21 1233334444333 5678999999999753 22332211110 001121
Q ss_pred cCCCCCCccCCCchhhHHHHHh
Q 004126 154 SVPKPQAHMETPLSEFFNVEVV 175 (772)
Q Consensus 154 ~i~kpsa~~~~~l~dlf~~~~~ 175 (772)
.+.+.|+..+.+++++|+....
T Consensus 142 ~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 142 QFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp EEEECCTTTCTTCTTHHHHTTT
T ss_pred cEEEEeeeeccCcchhhhhhhh
Confidence 3667899999999999998754
No 197
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.38 E-value=8.8e-07 Score=86.70 Aligned_cols=154 Identities=16% Similarity=-0.002 Sum_probs=81.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC--CcEEEEecCCCCCcCCCCCccHHHHHHHHH
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE--PCTLIMDLEGTDGRERGEDDTAFEKQSALF 79 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~--~qil~lDteG~~s~er~e~~~~fe~k~alf 79 (772)
|+|+|++|||||||+|.|.|..+.... .+..+.....+.....+ ..+.++||+|... -++-- . .
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~~~~~----~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~-~~~~~-~--------~ 97 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEFNLES----KSTIGVEFATRSIQVDGKTIKAQIWDTAGLER-YRAIT-S--------A 97 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEEEEETTEEEEEEEEEECSCCS-SSCCC-H--------H
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCC----CCccceEEEEEEEEECCEEEEEEEEECCCCcc-hhhhh-H--------H
Confidence 789999999999999999999887532 12111111222222222 3456799999862 22211 1 1
Q ss_pred HhhcccEEEEeeccccccccccCCH-HHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH-HHHHHHHHHHhhcCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANK-PLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKIWDSVPK 157 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~-~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~-~~l~~~l~~iw~~i~k 157 (772)
.+..+|.+++.....+.... .+. ..++.+.+ ....+.++++|++++|+....... ....+.....--.+..
T Consensus 98 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~-----~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld 170 (191)
T 1oix_A 98 YYRGAVGALLVYDIAKHLTY--ENVERWLKELRD-----HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE 170 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHH--HTHHHHHHHHHH-----HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred HhhcCCEEEEEEECcCHHHH--HHHHHHHHHHHH-----hcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 23456766554432222111 011 11111111 122467899999999875432221 1111111111112344
Q ss_pred CCCccCCCchhhHHHHHhh
Q 004126 158 PQAHMETPLSEFFNVEVVA 176 (772)
Q Consensus 158 psa~~~~~l~dlf~~~~~~ 176 (772)
.|++.+.++.++|+.....
T Consensus 171 ~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 171 TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 7889999999999876543
No 198
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.38 E-value=1.2e-06 Score=100.40 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=64.2
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeee--ecCCC-CCC-----------CCcccce----eeEecCCCCcEEEEecCCCCCc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFRE--MDAFK-GRS-----------QTTKGIW----MARCAGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsi--ms~~~-~r~-----------QTTrGiw----~~i~~~~~~qil~lDteG~~s~ 63 (772)
|+|+|.+++|||||+|+|.+..-.+ ..... +++ ..+||+- ..........+.++||||...
T Consensus 16 I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~d- 94 (529)
T 2h5e_A 16 FAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHED- 94 (529)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTT-
T ss_pred EEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChh-
Confidence 7899999999999999999742211 10000 001 1133332 112223467899999999741
Q ss_pred CCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 64 ERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 64 er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
.. ..+..++..+|.+|+.+...+ | .. .-...+.+ .......|+++|+||+|...
T Consensus 95 -----f~----~~~~~~l~~aD~~IlVvDa~~-g----~~-~~t~~~~~----~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 95 -----FS----EDTYRTLTAVDCCLMVIDAAK-G----VE-DRTRKLME----VTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp -----CC----HHHHHGGGGCSEEEEEEETTT-C----SC-HHHHHHHH----HHTTTTCCEEEEEECTTSCC
T ss_pred -----HH----HHHHHHHHHCCEEEEEEeCCc-c----ch-HHHHHHHH----HHHHcCCCEEEEEcCcCCcc
Confidence 11 234557889999988776533 1 11 11122222 11225788999999999753
No 199
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.36 E-value=5.8e-07 Score=89.35 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=82.1
Q ss_pred EEEeCCCCCChHHHHhHHhCC-----CeeeecCCCCCCCCccccee---------eE-----e------------cCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT-----NFREMDAFKGRSQTTKGIWM---------AR-----C------------AGIEP 50 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt-----kfsims~~~~r~QTTrGiw~---------~i-----~------------~~~~~ 50 (772)
|+|+|.+|||||||+|+|.+. ++.+++. -+++|...|. .+ + ...+.
T Consensus 33 i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~---d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 33 VNIMGAIGSGKTLLIERTIERIGNEVKIGAMLG---DVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTTTSCEEEEEC---SCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred EEEEcCCCCCHHHHHHHHHHHhccCCeEEEEec---CCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 789999999999999999975 4666653 3444432211 00 0 11245
Q ss_pred cEEEEecCCC-CCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEE
Q 004126 51 CTLIMDLEGT-DGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVI 129 (772)
Q Consensus 51 qil~lDteG~-~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVI 129 (772)
.++++||+|. ..+... + + .++.+++.+.... + ... ....... ...|.++|+
T Consensus 110 d~iiidt~G~~~~~~~~-~------------~-~~~~~i~vvd~~~-~----~~~-~~~~~~~--------~~~~~iiv~ 161 (221)
T 2wsm_A 110 DLLLIENVGNLICPVDF-D------------L-GENYRVVMVSVTE-G----DDV-VEKHPEI--------FRVADLIVI 161 (221)
T ss_dssp SEEEEEEEEBSSGGGGC-C------------C-SCSEEEEEEEGGG-C----TTH-HHHCHHH--------HHTCSEEEE
T ss_pred CEEEEeCCCCCCCCchh-c------------c-ccCcEEEEEeCCC-c----chh-hhhhhhh--------hhcCCEEEE
Confidence 7888888884 212111 0 0 2334444343221 1 111 1111111 236788999
Q ss_pred eCCCCCChh--chHHHHHHHHHHH--hhcCCCCCCccCCCchhhHHHHHhhcCCC
Q 004126 130 RDKTRTPLE--NLEPVLREDIQKI--WDSVPKPQAHMETPLSEFFNVEVVALSSF 180 (772)
Q Consensus 130 rd~d~t~~e--~l~~~l~~~l~~i--w~~i~kpsa~~~~~l~dlf~~~~~~Lph~ 180 (772)
||+|..+.. .+. .+.+.+..+ ...+...|+..+.+++++|+.....+..+
T Consensus 162 NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 162 NKVALAEAVGADVE-KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp ECGGGHHHHTCCHH-HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred ecccCCcchhhHHH-HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 999975331 222 223333333 23467789999999999999887766543
No 200
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.35 E-value=9.1e-06 Score=94.59 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCe
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNF 24 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkf 24 (772)
.|+|||++|||||||||.|.|..+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-
T ss_pred eEEEECCCCChHHHHHHHHhCCCC
Confidence 379999999999999999999743
No 201
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.33 E-value=9.2e-07 Score=94.11 Aligned_cols=162 Identities=15% Similarity=0.074 Sum_probs=65.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCC--C--CCCCcccceeeEecC---CCCcEEEEecCCCCCc----CCCCCcc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFK--G--RSQTTKGIWMARCAG---IEPCTLIMDLEGTDGR----ERGEDDT 70 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~--~--r~QTTrGiw~~i~~~---~~~qil~lDteG~~s~----er~e~~~ 70 (772)
|+|||+.|+|||||||.|+|.+....+... + ..+|+.-..++.... ....+-++||+|.... ++.....
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~ 100 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTII 100 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHH
Confidence 579999999999999999998443222100 0 012322122333322 2347889999998422 1111101
Q ss_pred HHH-HH--HHHHHh----------hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCCh
Q 004126 71 AFE-KQ--SALFAL----------AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 137 (772)
Q Consensus 71 ~fe-~k--~alfAL----------a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~ 137 (772)
.+. .+ .....+ +.++++++-.-...-|.... ...+++. + ..+.++++|++++|..+.
T Consensus 101 ~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~-~~~~l~~-------l--~~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 101 SYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPL-DVAFMKA-------I--HNKVNIVPVIAKADTLTL 170 (301)
T ss_dssp HHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHH-HHHHHHH-------H--TTTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHH-HHHHHHH-------H--HhcCCEEEEEEeCCCCCH
Confidence 100 00 111111 11333333221111111111 1112221 1 135789999999997654
Q ss_pred hchH---HHHHHHHHHHhhcCCCCCCccCCCchhhHHHHH
Q 004126 138 ENLE---PVLREDIQKIWDSVPKPQAHMETPLSEFFNVEV 174 (772)
Q Consensus 138 e~l~---~~l~~~l~~iw~~i~kpsa~~~~~l~dlf~~~~ 174 (772)
+.+. +.+.+.+....-.+...|+..+ ++++.|+...
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~ 209 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQT 209 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHH
Confidence 4332 3444444443335778888888 8888876544
No 202
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.30 E-value=2.5e-06 Score=100.94 Aligned_cols=112 Identities=17% Similarity=0.126 Sum_probs=65.0
Q ss_pred EEEeCCCCCChHHHHhHHhCC--Cee----------eecCCCCCCCCcccceee----EecCCC-------CcEEEEecC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT--NFR----------EMDAFKGRSQTTKGIWMA----RCAGIE-------PCTLIMDLE 58 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt--kfs----------ims~~~~r~QTTrGiw~~----i~~~~~-------~qil~lDte 58 (772)
|+|+|..++|||||+|+|+.. .+. +++.. . ..-+||+-+. .+...+ ..+.++|||
T Consensus 13 I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~-~-~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTP 90 (704)
T 2rdo_7 13 IGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWM-E-QEQERGITITSAATTAFWSGMAKQYEPHRINIIDTP 90 (704)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecCh-h-hHHhcCceeeeceEEEEECCccccCCceeEEEEeCC
Confidence 789999999999999999753 121 11100 0 0002332221 111122 789999999
Q ss_pred CCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 59 GTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 59 G~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
|.. +| ......++..+|.+|+.+...+ |. ......+++.+.+ .+.|+++|+||+|..
T Consensus 91 G~~---------df-~~~~~~~l~~aD~aIlVvDa~~-gv-~~qt~~~~~~~~~--------~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 91 GHV---------DF-TIEVERSMRVLDGAVMVYCAVG-GV-QPQSETVWRQANK--------YKVPRIAFVNKMDRM 147 (704)
T ss_pred Ccc---------ch-HHHHHHHHHHCCEEEEEEeCCC-CC-cHHHHHHHHHHHH--------cCCCEEEEEeCCCcc
Confidence 974 12 1234567788999988776543 11 1112222222222 578899999999874
No 203
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.29 E-value=2.5e-06 Score=100.32 Aligned_cols=112 Identities=18% Similarity=0.115 Sum_probs=66.4
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCC---CCC---------ccccee----eEecCCCCcEEEEecCCCCCcCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGR---SQT---------TKGIWM----ARCAGIEPCTLIMDLEGTDGRER 65 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r---~QT---------TrGiw~----~i~~~~~~qil~lDteG~~s~er 65 (772)
|+|+|..++|||||+|+|.|....+-.. |. +++ +||+-+ .........+.++||||..
T Consensus 12 i~IiG~~gaGKTTLl~~L~~~~~~~~~~--G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~---- 85 (665)
T 2dy1_A 12 VALVGHAGSGKTTLTEALLYKTGAKERR--GRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG---- 85 (665)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSSSSC--CCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG----
T ss_pred EEEECCCCChHHHHHHHHHHhcCCCCcc--ceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc----
Confidence 7899999999999999999654432110 10 000 122211 1111235678899999964
Q ss_pred CCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 66 GEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 66 ~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
+|. .....++..+|..++.+...+ |. ......+++.+.+ ...|+++|+||+|..
T Consensus 86 -----~f~-~~~~~~l~~ad~~ilVvD~~~-g~-~~qt~~~~~~~~~--------~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 -----DFV-GEIRGALEAADAALVAVSAEA-GV-QVGTERAWTVAER--------LGLPRMVVVTKLDKG 139 (665)
T ss_dssp -----GGH-HHHHHHHHHCSEEEEEEETTT-CS-CHHHHHHHHHHHH--------TTCCEEEEEECGGGC
T ss_pred -----chH-HHHHHHHhhcCcEEEEEcCCc-cc-chhHHHHHHHHHH--------ccCCEEEEecCCchh
Confidence 122 345667788998887665422 21 1112223333333 578899999999875
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.28 E-value=6.9e-07 Score=98.05 Aligned_cols=85 Identities=19% Similarity=0.101 Sum_probs=59.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCC---------------------CCcEEEEecCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI---------------------EPCTLIMDLEGT 60 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~---------------------~~qil~lDteG~ 60 (772)
|+|||.||+|||||+|+|.|.+..+ + ..+.||...-.|....+ ..++.++||||+
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~~~v-~---~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRANALA-A---NYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHTTC-S---SCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcc-c---CCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 7899999999999999999976322 2 46778887777765432 247999999999
Q ss_pred CCcC-CCCCccHHHHHHHHHHhhcccEEEEeeccc
Q 004126 61 DGRE-RGEDDTAFEKQSALFALAVSDIVLINMWCH 94 (772)
Q Consensus 61 ~s~e-r~e~~~~fe~k~alfALa~sDvliiNl~~~ 94 (772)
.... .++... ...+..+..+|++++.+.+.
T Consensus 80 ~~~a~~~~~lg----~~fl~~ir~ad~ii~VvD~~ 110 (368)
T 2dby_A 80 VKGAHKGEGLG----NQFLAHIREVAAIAHVLRCF 110 (368)
T ss_dssp CCCCCSSSCTT----HHHHHHHHTCSEEEEEEECC
T ss_pred cccccccchHH----HHHHHHHHhCCEEEEEEECC
Confidence 7321 111111 23345678999998877653
No 205
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.27 E-value=2.7e-06 Score=89.35 Aligned_cols=130 Identities=15% Similarity=0.065 Sum_probs=68.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCC----CCCCCCcccceeeEecCC---CCcEEEEecCCCCCcCCCCCc----c
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAF----KGRSQTTKGIWMARCAGI---EPCTLIMDLEGTDGRERGEDD----T 70 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~----~~r~QTTrGiw~~i~~~~---~~qil~lDteG~~s~er~e~~----~ 70 (772)
|+|||+.|+|||||||.|+|......+.. ...+++++..-+|..... ...+-+.|++|+.....+... .
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~ 84 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIE 84 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHH
Confidence 78999999999999999999654321110 012345554445555432 247789999999744332210 1
Q ss_pred HHH-----HHHHH---------HHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCC
Q 004126 71 AFE-----KQSAL---------FALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 136 (772)
Q Consensus 71 ~fe-----~k~al---------fALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~ 136 (772)
.+. +.... .+++-+++.++-+....-|.... ...+++.+.+ . .++++||+|.|..+
T Consensus 85 ~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~l-D~~~l~~L~~--------~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 85 KYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPL-DLEFMKHLSK--------V-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHH-HHHHHHHHHT--------T-SEEEEEETTGGGSC
T ss_pred HHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHH-HHHHHHHHHh--------c-CcEEEEEeccccCC
Confidence 111 11111 12333566655554322232221 2333444433 3 89999999998765
Q ss_pred hhchH
Q 004126 137 LENLE 141 (772)
Q Consensus 137 ~e~l~ 141 (772)
.+.+.
T Consensus 155 ~~e~~ 159 (270)
T 3sop_A 155 LEEKS 159 (270)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 206
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.08 E-value=4e-06 Score=93.71 Aligned_cols=60 Identities=20% Similarity=0.055 Sum_probs=37.7
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCC---CcEEEEecCCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIE---PCTLIMDLEGTDG 62 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~---~qil~lDteG~~s 62 (772)
++|||++|+|||||||.|+|..+.-.+.....+.+|+.. ++...... ..+-++|++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~-i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQS-NTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEE-EEEEEEC--CEEEEEEEEEECCCC
T ss_pred EEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEee-EEEEeecCccccccchhhhhhhhh
Confidence 789999999999999999999764322111123344442 33333222 3688999999963
No 207
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.03 E-value=2.3e-06 Score=89.49 Aligned_cols=57 Identities=32% Similarity=0.313 Sum_probs=38.0
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRE 64 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~e 64 (772)
|.++|.||+|||||+|+|+|.++..++ +.+.||++.-.-. .+..+.++||||+..+.
T Consensus 102 v~~vG~~~vGKSslin~l~~~~~~~~~---~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 102 VLIVGVPNTGKSTIINKLKGKRASSVG---AQPGITKGIQWFS---LENGVKILDTPGILYKN 158 (262)
T ss_dssp EEEEESTTSSHHHHHHHHHTTCC-------------CCSCEEE---CTTSCEEESSCEECCCC
T ss_pred eEEeCCCCCCHHHHHHHHhcccccccC---CCCCCccceEEEE---eCCCEEEEECCCcccCc
Confidence 679999999999999999999886555 3567888764221 13578899999998544
No 208
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.85 E-value=1.6e-05 Score=95.99 Aligned_cols=114 Identities=19% Similarity=0.153 Sum_probs=64.9
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCC--------ccccee-----eEe---------------cCCCCcEE
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQT--------TKGIWM-----ARC---------------AGIEPCTL 53 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QT--------TrGiw~-----~i~---------------~~~~~qil 53 (772)
|+|+|.+++|||||+|+|++..-.+.+...+..+. .||+-+ .+. ......+.
T Consensus 22 I~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 101 (842)
T 1n0u_A 22 MSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLIN 101 (842)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEE
Confidence 78999999999999999997532222210000000 122221 110 11245789
Q ss_pred EEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCC
Q 004126 54 IMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 133 (772)
Q Consensus 54 ~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d 133 (772)
++||||... .. ..+..++..+|.+|+.+...+-- ......++..+.+ .+.|+++|+||+|
T Consensus 102 liDTPG~~d------f~----~~~~~~l~~aD~ailVvDa~~g~--~~qt~~~~~~~~~--------~~~p~ilviNK~D 161 (842)
T 1n0u_A 102 LIDSPGHVD------FS----SEVTAALRVTDGALVVVDTIEGV--CVQTETVLRQALG--------ERIKPVVVINKVD 161 (842)
T ss_dssp EECCCCCCS------SC----HHHHHHHHTCSEEEEEEETTTBS--CHHHHHHHHHHHH--------TTCEEEEEEECHH
T ss_pred EEECcCchh------hH----HHHHHHHHhCCEEEEEEeCCCCC--CHHHHHHHHHHHH--------cCCCeEEEEECCC
Confidence 999999751 11 13456778999998877654311 1112222332222 5688899999998
Q ss_pred CC
Q 004126 134 RT 135 (772)
Q Consensus 134 ~t 135 (772)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.84 E-value=3.7e-05 Score=87.66 Aligned_cols=119 Identities=18% Similarity=0.082 Sum_probs=68.6
Q ss_pred CEEEeCCCCCChHHHHhHHh------CCCeeeecCCCCCCCC--------cc-cce-eeEec----------------CC
Q 004126 1 MCHIFFVIMTGKSTLLNHLF------GTNFREMDAFKGRSQT--------TK-GIW-MARCA----------------GI 48 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf------Gtkfsims~~~~r~QT--------Tr-Giw-~~i~~----------------~~ 48 (772)
.|+|+|+||||||||.|+|. |.++.+++.-..|+-+ ++ |+- .+..+ ..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~~~ 182 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNE 182 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHHHC
Confidence 37899999999999999999 9999998753222211 21 111 11111 04
Q ss_pred CCcEEEEecCCCCCcCCCCCccHHHHHHHHH-HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccE-E
Q 004126 49 EPCTLIMDLEGTDGRERGEDDTAFEKQSALF-ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTL-M 126 (772)
Q Consensus 49 ~~qil~lDteG~~s~er~e~~~~fe~k~alf-ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~l-l 126 (772)
+.+++|+||||..... ..++..+... ....+|.+++.++... | . ......+...+ ..++ .
T Consensus 183 ~~DvvIIDTpG~~~~~-----~~l~~el~~~~~~i~pd~vllVvDa~~-g--~-~~~~~a~~~~~---------~~~i~g 244 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQE-----DSLFEEMLQVANAIQPDNIVYVMDASI-G--Q-ACEAQAKAFKD---------KVDVAS 244 (504)
T ss_dssp TCCEEEEEECCCCTTC-----HHHHHHHHHHHHHHCCSEEEEEEETTC-C--T-THHHHHHHHHH---------HHCCCC
T ss_pred CCcEEEEeCCCCcccc-----hhHHHHHHHHHhhhcCceEEEEEeccc-c--c-cHHHHHHHHHh---------hcCceE
Confidence 5789999999998422 2333222111 1226888877776532 2 1 11112222211 2454 7
Q ss_pred EEEeCCCCCCh
Q 004126 127 FVIRDKTRTPL 137 (772)
Q Consensus 127 fVIrd~d~t~~ 137 (772)
+|+||+|....
T Consensus 245 vVlNK~D~~~~ 255 (504)
T 2j37_W 245 VIVTKLDGHAK 255 (504)
T ss_dssp EEEECTTSCCC
T ss_pred EEEeCCccccc
Confidence 99999987643
No 210
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.81 E-value=1.3e-05 Score=79.89 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=35.8
Q ss_pred ccEEEEEeCCCCCChhc-hHHHHHHHHHHH--hhcCCCCCCccCCCchhhHHHHHhhc
Q 004126 123 TTLMFVIRDKTRTPLEN-LEPVLREDIQKI--WDSVPKPQAHMETPLSEFFNVEVVAL 177 (772)
Q Consensus 123 ~~llfVIrd~d~t~~e~-l~~~l~~~l~~i--w~~i~kpsa~~~~~l~dlf~~~~~~L 177 (772)
.|.++|+||+|..+... -...+.+.+..+ ...+...|+..+.+++++|+.....+
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 56799999999754321 112233334333 22466789999999999999876544
No 211
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.75 E-value=4.6e-05 Score=85.31 Aligned_cols=119 Identities=14% Similarity=0.055 Sum_probs=69.4
Q ss_pred CEEEeCCCCCChHHHHhHHhC------CCeeeecCCCCCCC---------------------Ccccce----eeEecCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG------TNFREMDAFKGRSQ---------------------TTKGIW----MARCAGIE 49 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG------tkfsims~~~~r~Q---------------------TTrGiw----~~i~~~~~ 49 (772)
+|+|+|+||||||||.|.|.+ .++.+++.-.-++. ||++.. .++.....
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~~ 180 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFKK 180 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhhC
Confidence 478999999999999999987 56776664211110 444421 12222256
Q ss_pred CcEEEEecCCCCCcCCCCCccHHHHHH-HHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCC-ccEEE
Q 004126 50 PCTLIMDLEGTDGRERGEDDTAFEKQS-ALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK-TTLMF 127 (772)
Q Consensus 50 ~qil~lDteG~~s~er~e~~~~fe~k~-alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k-~~llf 127 (772)
.+++++||||..... ..++..+ ...++..+|.+++.++... | + ..+..+ +.|.... +...+
T Consensus 181 ~D~vIIDT~G~~~~~-----~~l~~~l~~i~~~~~~d~vllVvda~~-g--~----~~~~~~-----~~~~~~~~~i~gv 243 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEE-----KGLLEEMKQIKEITNPDEIILVIDGTI-G--Q----QAGIQA-----KAFKEAVGEIGSI 243 (432)
T ss_dssp CSEEEEECCCSCSSH-----HHHHHHHHHTTSSSCCSEEEEEEEGGG-G--G----GHHHHH-----HHHHTTSCSCEEE
T ss_pred CCEEEEcCCCCcccc-----HHHHHHHHHHHHHhcCcceeEEeeccc-c--H----HHHHHH-----HHHhhcccCCeEE
Confidence 789999999987321 2333322 1222336888887776422 2 1 122222 2232233 44889
Q ss_pred EEeCCCCCC
Q 004126 128 VIRDKTRTP 136 (772)
Q Consensus 128 VIrd~d~t~ 136 (772)
|+|++|...
T Consensus 244 VlnK~D~~~ 252 (432)
T 2v3c_C 244 IVTKLDGSA 252 (432)
T ss_dssp EEECSSSCS
T ss_pred EEeCCCCcc
Confidence 999998764
No 212
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.46 E-value=0.0022 Score=69.36 Aligned_cols=174 Identities=9% Similarity=-0.001 Sum_probs=93.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 81 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfAL 81 (772)
|.++|..|||||+|++.+++..+..-. ..-..|-|+-.... ...-.+-+.||+|-..- +. ..+.. ..-.
T Consensus 2 IvllGdsgvGKTSLl~~~~~~~~~~~~---~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf-~~---~~l~~---~~yy 70 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVFHNMQPLDT---LYLESTSNPSLEHF-STLIDLAVMELPGQLNY-FE---PSYDS---ERLF 70 (331)
T ss_dssp EEEECSTTSSTTHHHHHHHSCCCSGGG---TTCCCCCSCCCEEE-CSSSCEEEEECCSCSSS-CC---CSHHH---HHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCcc---ceecCeeeeeeEEE-ccEEEEEEEECCCchhc-cc---hhhhh---hhhc
Confidence 679999999999999999876443211 11234555443322 22367899999997521 11 11111 1224
Q ss_pred hcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhch---HHHHHHHHHHHhhcC---
Q 004126 82 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL---EPVLREDIQKIWDSV--- 155 (772)
Q Consensus 82 a~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l---~~~l~~~l~~iw~~i--- 155 (772)
..++++|+.....+- ... ...-++.+.+. +.-. .+..|+++|.||.|+.+.+.- .+.+.+....-|.+-
T Consensus 71 r~a~~~IlV~Ditd~--~~~-~~~~l~~~l~~-~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~ 145 (331)
T 3r7w_B 71 KSVGALVYVIDSQDE--YIN-AITNLAMIIEY-AYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLD 145 (331)
T ss_dssp TTCSEEEEECCCSSC--TTH-HHHHHHHHHHH-HHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCS
T ss_pred cCCCEEEEEEECCch--HHH-HHHHHHHHHHH-Hhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhccc
Confidence 689999876644332 111 11112111110 1111 246899999999998765432 122222222223321
Q ss_pred ------CCCCCccCCCchhhHHHHHhhc-CCCccchhHHHHHHHHHHhhhcc
Q 004126 156 ------PKPQAHMETPLSEFFNVEVVAL-SSFEEKEELFKEQVASLRQRFYH 200 (772)
Q Consensus 156 ------~kpsa~~~~~l~dlf~~~~~~L-ph~~~~~~~F~~~v~~Lr~~f~~ 200 (772)
..-|+. +.++.+.|...+..+ |+ ...++.+-+.|..
T Consensus 146 ~~~i~f~eTSAk-d~nV~eAFs~iv~~li~~--------~~~le~~L~~~~~ 188 (331)
T 3r7w_B 146 GVQVSFYLTSIF-DHSIYEAFSRIVQKLIPE--------LSFLENMLDNLIQ 188 (331)
T ss_dssp CCCEEEECCCSS-SSHHHHHHHHHHTTSSTT--------HHHHHHHHTGGGC
T ss_pred ccCceEEEeccC-CCcHHHHHHHHHHHHHhh--------HHHHHHHHHHHHH
Confidence 144565 357888887776544 33 2556667777763
No 213
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.44 E-value=0.00043 Score=80.99 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=69.2
Q ss_pred EEEeCCCCCChHHHHhHHhCC--CeeeecCCCCCCCCc--------ccceeeEe----cCCCCcEEEEecCCCCCcCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT--NFREMDAFKGRSQTT--------KGIWMARC----AGIEPCTLIMDLEGTDGRERGE 67 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt--kfsims~~~~r~QTT--------rGiw~~i~----~~~~~qil~lDteG~~s~er~e 67 (772)
|+|||...+|||||.-+|+-. .++-+.....+.++| |||-+--. .-++..|-++||||--
T Consensus 5 i~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~------ 78 (638)
T 3j25_A 5 IGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHM------ 78 (638)
T ss_dssp CEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSS------
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcH------
Confidence 689999999999999998621 122111111122222 34432211 1256789999999953
Q ss_pred CccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 68 DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 68 ~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
| |- .-+..||..+|..|+.+...+ |- ..+...+++...+ .+.|.+++|||+|..
T Consensus 79 D---F~-~Ev~raL~~~DgavlVVDa~~-GV-~~qT~~v~~~a~~--------~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 79 D---FL-AEVYRSLSVLDGAILLISAKD-GV-QAQTRILFHALRK--------MGIPTIFFINKIDQN 132 (638)
T ss_dssp S---TH-HHHHHHHTTCSEEECCEESSC-TT-CSHHHHHHHHHHH--------HTCSCEECCEECCSS
T ss_pred H---HH-HHHHHHHHHhCEEEEEEeCCC-CC-cHHHHHHHHHHHH--------cCCCeEEEEeccccc
Confidence 2 32 235678899999988887633 21 1223344555555 577788999999863
No 214
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.40 E-value=0.00082 Score=77.32 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=65.8
Q ss_pred EEEeCCCCCChHHHHhHHh--------------CC--CeeeecC---CCCCCCCcccceeeEecCCCCcEEEEecCCCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLF--------------GT--NFREMDA---FKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDG 62 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf--------------Gt--kfsims~---~~~r~QTTrGiw~~i~~~~~~qil~lDteG~~s 62 (772)
|+|||...+|||||.-+|+ |+ +-.+||. ..-|+=|-+-..+.. .-.+..|-++||||--
T Consensus 34 iaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~-~~~~~~iNlIDTPGHv- 111 (548)
T 3vqt_A 34 FAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF-PYRDRVVNLLDTPGHQ- 111 (548)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE-EETTEEEEEECCCCGG-
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEE-EECCEEEEEEeCCCcH-
Confidence 6899999999999999996 11 1123331 111111211111111 1256789999999974
Q ss_pred cCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 63 RERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 63 ~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
+|- .-+..||..+|-.|+.+...+ |- +.....+++...+ .+.|.+++|||+|..
T Consensus 112 --------DF~-~Ev~raL~~~DgAvlVvda~~-GV-~~qT~~v~~~a~~--------~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 112 --------DFS-EDTYRVLTAVDSALVVIDAAK-GV-EAQTRKLMDVCRM--------RATPVMTFVNKMDRE 165 (548)
T ss_dssp --------GCS-HHHHHHHHSCSEEEEEEETTT-BS-CHHHHHHHHHHHH--------TTCCEEEEEECTTSC
T ss_pred --------HHH-HHHHHHHHhcCceEEEeecCC-Cc-ccccHHHHHHHHH--------hCCceEEEEecccch
Confidence 121 124567889999988887633 21 2223334455555 789999999999864
No 215
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.33 E-value=0.00091 Score=75.09 Aligned_cols=120 Identities=12% Similarity=0.044 Sum_probs=70.1
Q ss_pred CEEEeCCCCCChHHHHhHHh------CCCeeeecCCCCCCCC-----cccceeeE--e---c----------------CC
Q 004126 1 MCHIFFVIMTGKSTLLNHLF------GTNFREMDAFKGRSQT-----TKGIWMAR--C---A----------------GI 48 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf------Gtkfsims~~~~r~QT-----TrGiw~~i--~---~----------------~~ 48 (772)
+|.++|+|||||||+++.|. |.++.+++.-..|+.. +.+...++ . . ..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~ 181 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSK 181 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhC
Confidence 37899999999999999998 8888888753333311 11111111 0 0 02
Q ss_pred CCcEEEEecCCCCCcCCCCCccHHHHHH-HHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEE
Q 004126 49 EPCTLIMDLEGTDGRERGEDDTAFEKQS-ALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMF 127 (772)
Q Consensus 49 ~~qil~lDteG~~s~er~e~~~~fe~k~-alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llf 127 (772)
+..++++||+|.+... ...+..+ .+.+....|.+++.++... | + + .+..+ +.|...-.+..+
T Consensus 182 ~~DvVIIDTaGrl~~d-----~~lm~el~~i~~~~~pd~vlLVvDA~~-g--q--~--a~~~a-----~~f~~~~~i~gV 244 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKED-----KALIEEMKQISNVIHPHEVILVIDGTI-G--Q--Q--AYNQA-----LAFKEATPIGSI 244 (443)
T ss_dssp TCSEEEEECCCCSSCC-----HHHHHHHHHHHHHHCCSEEEEEEEGGG-G--G--G--HHHHH-----HHHHHSCTTEEE
T ss_pred CCCEEEEECCCcccch-----HHHHHHHHHHHHhhcCceEEEEEeCCC-c--h--h--HHHHH-----HHHHhhCCCeEE
Confidence 3789999999987322 2333322 2344445787877787643 3 1 1 12111 222224455678
Q ss_pred EEeCCCCCCh
Q 004126 128 VIRDKTRTPL 137 (772)
Q Consensus 128 VIrd~d~t~~ 137 (772)
|++|+|.+..
T Consensus 245 IlTKlD~~~~ 254 (443)
T 3dm5_A 245 IVTKLDGSAK 254 (443)
T ss_dssp EEECCSSCSS
T ss_pred EEECCCCccc
Confidence 9999987643
No 216
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.21 E-value=0.00015 Score=79.27 Aligned_cols=58 Identities=24% Similarity=0.196 Sum_probs=36.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCe-eeecCC---CCCCC-CcccceeeEecCCCCcEEEEecCCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNF-REMDAF---KGRSQ-TTKGIWMARCAGIEPCTLIMDLEGTD 61 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkf-sims~~---~~r~Q-TTrGiw~~i~~~~~~qil~lDteG~~ 61 (772)
+++|+|++|+|||||||.|.|..- ...... .|++. ||+..-++.... ...++||||+.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q---~~~l~dtpgv~ 279 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPH---GGDVIDSPGVR 279 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTT---SCEEEECHHHH
T ss_pred EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECC---CCEecCcccHH
Confidence 378999999999999999999654 221111 13332 666666666542 23568999986
No 217
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.12 E-value=0.00013 Score=78.25 Aligned_cols=59 Identities=22% Similarity=0.141 Sum_probs=33.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCC---CCCC-CCcccceeeEecCCCCcEEEEecCCCCCc
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAF---KGRS-QTTKGIWMARCAGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~---~~r~-QTTrGiw~~i~~~~~~qil~lDteG~~s~ 63 (772)
+++|+|++|+|||||||.|.|..-...... .+++ .||+..-+... . ...++||||+...
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~--~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT--S--GGLVADTPGFSSL 237 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE--T--TEEEESSCSCSSC
T ss_pred EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc--C--CEEEecCCCcccc
Confidence 378999999999999999999642222111 0123 36665432222 1 3578999999743
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.09 E-value=0.002 Score=68.45 Aligned_cols=121 Identities=19% Similarity=0.163 Sum_probs=66.3
Q ss_pred CEEEeCCCCCChHHHHhHHh------CCCeeeecCCCCCCCCc---------cccee--e-------------Eec--CC
Q 004126 1 MCHIFFVIMTGKSTLLNHLF------GTNFREMDAFKGRSQTT---------KGIWM--A-------------RCA--GI 48 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf------Gtkfsims~~~~r~QTT---------rGiw~--~-------------i~~--~~ 48 (772)
+++++|++|+||||+++.|. |.++.+++.-..|+-+. .|+.. + +.. ..
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~ 179 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSE 179 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 36789999999999999998 77888877542333111 01111 0 000 04
Q ss_pred CCcEEEEecCCCCCcCCCCCccHHHHHHH-HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEE
Q 004126 49 EPCTLIMDLEGTDGRERGEDDTAFEKQSA-LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMF 127 (772)
Q Consensus 49 ~~qil~lDteG~~s~er~e~~~~fe~k~a-lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llf 127 (772)
+..++++||||..+. +.+ ...+..+. +.++..+|.+++.++... | . ..++.+.. |.+..+...+
T Consensus 180 ~~D~ViIDTpg~~~~--~~~-~~l~~el~~i~~~~~~d~vllVvda~~-g----~--~~~~~~~~-----~~~~~~i~gv 244 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGY--GEE-AALLEEMKNIYEAIKPDEVTLVIDASI-G----Q--KAYDLASK-----FNQASKIGTI 244 (297)
T ss_dssp TCSEEEEECCCSCCT--TCH-HHHHHHHHHHHHHHCCSEEEEEEEGGG-G----G--GHHHHHHH-----HHHTCTTEEE
T ss_pred CCCEEEEeCCCCccc--ccH-HHHHHHHHHHHHHhcCCEEEEEeeCCc-h----H--HHHHHHHH-----HHhhCCCCEE
Confidence 568999999999841 111 12222221 123335666666665432 2 1 12333322 2212334778
Q ss_pred EEeCCCCCC
Q 004126 128 VIRDKTRTP 136 (772)
Q Consensus 128 VIrd~d~t~ 136 (772)
|+|++|.+.
T Consensus 245 Vlnk~D~~~ 253 (297)
T 1j8m_F 245 IITKMDGTA 253 (297)
T ss_dssp EEECGGGCT
T ss_pred EEeCCCCCc
Confidence 999997653
No 219
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.90 E-value=0.002 Score=72.11 Aligned_cols=121 Identities=18% Similarity=0.125 Sum_probs=66.6
Q ss_pred CEEEeCCCCCChHHHHhHHh------CCCeeeecCCCCCCCC-----cccceeeE-------------------ec--CC
Q 004126 1 MCHIFFVIMTGKSTLLNHLF------GTNFREMDAFKGRSQT-----TKGIWMAR-------------------CA--GI 48 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf------Gtkfsims~~~~r~QT-----TrGiw~~i-------------------~~--~~ 48 (772)
+|.++|+|||||||+++.|. |.++.+++.-..|+-. +.+...++ .. ..
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~ 178 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKN 178 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhc
Confidence 37899999999999999998 7788776632222210 00011110 00 12
Q ss_pred CCcEEEEecCCCCCcCCCCCccHHHHHHH-HHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEE
Q 004126 49 EPCTLIMDLEGTDGRERGEDDTAFEKQSA-LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMF 127 (772)
Q Consensus 49 ~~qil~lDteG~~s~er~e~~~~fe~k~a-lfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llf 127 (772)
+..+|++||||....... ..++.... +......|.+++.++.+. | + +.....+...+ .-.+-.+
T Consensus 179 ~~DvvIIDTaGr~~~~~d---~~lm~el~~i~~~~~pd~vlLVlDa~~-g--q-~a~~~a~~f~~--------~~~~~gV 243 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEE---TKLLEEMKEMYDVLKPDDVILVIDASI-G--Q-KAYDLASRFHQ--------ASPIGSV 243 (433)
T ss_dssp TCSEEEEEECCCSSSCCT---THHHHHHHHHHHHHCCSEEEEEEEGGG-G--G-GGHHHHHHHHH--------HCSSEEE
T ss_pred CCCEEEEECCCCccccCC---HHHHHHHHHHHHhhCCcceEEEEeCcc-c--h-HHHHHHHHHhc--------ccCCcEE
Confidence 578999999997641121 33333322 222224566666676643 3 1 11222333222 2345678
Q ss_pred EEeCCCCCC
Q 004126 128 VIRDKTRTP 136 (772)
Q Consensus 128 VIrd~d~t~ 136 (772)
|++|.|.+.
T Consensus 244 IlTKlD~~a 252 (433)
T 3kl4_A 244 IITKMDGTA 252 (433)
T ss_dssp EEECGGGCS
T ss_pred EEecccccc
Confidence 999998653
No 220
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.86 E-value=0.00081 Score=71.22 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=34.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCCC---CCC-CcccceeeEecCCCCcEEEEecCCCCCc
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFKG---RSQ-TTKGIWMARCAGIEPCTLIMDLEGTDGR 63 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~~---r~Q-TTrGiw~~i~~~~~~qil~lDteG~~s~ 63 (772)
+++|+|++|+|||||||.|.|..-........ .++ ||+..-.-.. ..-..++|+||+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~---~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF---DFGGYVVDTPGFANL 234 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEEC---TTSCEEESSCSSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEc---CCCCEEEECcCCCcc
Confidence 47899999999999999999954322111111 222 4543321111 123478899998633
No 221
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.84 E-value=0.0012 Score=70.09 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=34.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeecCCC---CCCC-CcccceeeEecCCCCcEEEEecCCCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMDAFK---GRSQ-TTKGIWMARCAGIEPCTLIMDLEGTDG 62 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims~~~---~r~Q-TTrGiw~~i~~~~~~qil~lDteG~~s 62 (772)
+++++|++|+|||||||.|. ..-....... ++++ ||+........ .--.++||||+.+
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~---~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFG---KGSFVGDTPGFSK 228 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEET---TTEEEESSCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcC---CCcEEEECcCcCc
Confidence 36899999999999999998 4221111111 1333 55554322221 2357889999873
No 222
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.48 E-value=0.019 Score=67.92 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=63.9
Q ss_pred EEEeCCCCCChHHHHhHHh---CC---------CeeeecCCCCCCC-Cccccee-----eEe-c-----CCCCcEEEEec
Q 004126 2 CHIFFVIMTGKSTLLNHLF---GT---------NFREMDAFKGRSQ-TTKGIWM-----ARC-A-----GIEPCTLIMDL 57 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf---Gt---------kfsims~~~~r~Q-TTrGiw~-----~i~-~-----~~~~qil~lDt 57 (772)
|+|||...+|||||.-+|+ |. +-.+||. ..+ =-|||-+ ... + ..+..|-++||
T Consensus 16 i~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~---~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 16 IGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDW---MVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEECCSSSCHHHHHHHHHHHHHHHHHC---------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCC---hHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 7899999999999999987 21 1112221 000 1134332 111 1 12457889999
Q ss_pred CCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 58 EGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 58 eG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
||-- +|- .-+.-||..+|-.|+.+.+.+ |- ......+++...+ .+.|.+++|||+|..
T Consensus 93 PGHv---------DF~-~Ev~~aLr~~DgavlvVDave-GV-~~qT~~v~~~a~~--------~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 93 PGHV---------DFT-IEVERSLRVLDGAVVVFCGTS-GV-EPQSETVWRQANK--------YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CSCT---------TCH-HHHHHHHHHCSEEEEEEETTT-CS-CHHHHHHHHHHHH--------HTCCEEEEEECSSST
T ss_pred CCCc---------ccH-HHHHHHHHHhCeEEEEEECCC-CC-chhHHHHHHHHHH--------cCCCeEEEEcccccc
Confidence 9964 222 234567889999988887633 21 2223345555555 678899999999963
No 223
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.16 E-value=0.013 Score=65.58 Aligned_cols=29 Identities=17% Similarity=-0.007 Sum_probs=26.2
Q ss_pred EEEeCCCCCChHHHHhHHh-------CCCeeeecCC
Q 004126 2 CHIFFVIMTGKSTLLNHLF-------GTNFREMDAF 30 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf-------Gtkfsims~~ 30 (772)
|.++|++|+||||+...|. |.++.+++.-
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 6789999999999999998 9999998854
No 224
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.57 E-value=0.0047 Score=59.54 Aligned_cols=21 Identities=24% Similarity=0.244 Sum_probs=18.8
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+++|+|+++||||||++.+++
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 478999999999999998765
No 225
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.56 E-value=0.0041 Score=61.60 Aligned_cols=22 Identities=32% Similarity=0.217 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+++||||||++.|.|.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999984
No 226
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.44 E-value=0.0051 Score=59.88 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999999985
No 227
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.40 E-value=0.0043 Score=62.26 Aligned_cols=55 Identities=15% Similarity=-0.019 Sum_probs=35.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCee-eecCCCCCCCCcccceeeEecCCCCcEEEEecCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFR-EMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGT 60 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfs-ims~~~~r~QTTrGiw~~i~~~~~~qil~lDteG~ 60 (772)
+++|+|+.|+|||||+|.|.+..-. +.. +.+-|||..--|-.. ...+.|+|.+.+
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~---~vs~TTR~p~~gE~~--G~~y~fvs~~~f 76 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPEKFVY---PVPYTTRPPRKSEED--GKEYHFISTEEM 76 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEEC---CCCEECSCCCTTCCT--TSSCEECCHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCccEEe---eecccccCCcCCeec--cccceeccHHHh
Confidence 4789999999999999999975321 111 356788877654322 233455555444
No 228
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.40 E-value=0.0062 Score=60.20 Aligned_cols=22 Identities=36% Similarity=0.270 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.|+|||||+|.|.|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4799999999999999999984
No 229
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.40 E-value=0.0053 Score=59.49 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=20.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+||||||+|.|.|.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999984
No 230
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.38 E-value=0.0053 Score=60.79 Aligned_cols=22 Identities=23% Similarity=0.108 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||+|.|.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999995
No 231
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.30 E-value=0.0067 Score=59.40 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=19.7
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
++|+|++++||||||+.|.|.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999985
No 232
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.14 E-value=0.0076 Score=61.63 Aligned_cols=22 Identities=32% Similarity=0.205 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+|||||||+.|.|.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4799999999999999999994
No 233
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.13 E-value=0.0082 Score=60.29 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||+|.|.|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999994
No 234
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.12 E-value=0.0074 Score=61.21 Aligned_cols=22 Identities=36% Similarity=0.146 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 235
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.12 E-value=0.0079 Score=57.97 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=20.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
++.|+|+++||||||++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999985
No 236
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.11 E-value=0.0095 Score=60.30 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999995
No 237
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.95 E-value=0.0091 Score=61.79 Aligned_cols=22 Identities=36% Similarity=0.312 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+||||||||.|.|.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 238
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.94 E-value=0.0098 Score=61.14 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 239
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.86 E-value=0.01 Score=61.89 Aligned_cols=22 Identities=45% Similarity=0.353 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||||.|.|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4799999999999999999995
No 240
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.86 E-value=0.01 Score=60.85 Aligned_cols=22 Identities=23% Similarity=0.019 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+|||||||+.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 241
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.83 E-value=0.01 Score=60.73 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 242
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.81 E-value=0.011 Score=60.62 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+|||||||+.|.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999996
No 243
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.81 E-value=0.011 Score=61.56 Aligned_cols=22 Identities=27% Similarity=0.123 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 244
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.78 E-value=0.011 Score=60.11 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 245
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.76 E-value=0.011 Score=62.08 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+|||||||+.|.|.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999994
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.75 E-value=0.01 Score=60.05 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.|||||||+|.|.|.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 247
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.72 E-value=0.012 Score=57.07 Aligned_cols=22 Identities=45% Similarity=0.323 Sum_probs=20.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+||||||++.|.|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999974
No 248
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.71 E-value=0.012 Score=62.39 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=23.5
Q ss_pred CEEEeCCCCCChHHHHhHHh-------CCCeeeecC
Q 004126 1 MCHIFFVIMTGKSTLLNHLF-------GTNFREMDA 29 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf-------Gtkfsims~ 29 (772)
+|+++|++|+||||+++.|. |.++.+++.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 37899999999999999986 456666654
No 249
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.71 E-value=0.012 Score=60.92 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999995
No 250
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.68 E-value=0.012 Score=60.67 Aligned_cols=22 Identities=27% Similarity=0.083 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 251
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.65 E-value=0.01 Score=58.29 Aligned_cols=22 Identities=32% Similarity=0.187 Sum_probs=20.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+.+||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 252
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.64 E-value=0.013 Score=60.46 Aligned_cols=22 Identities=32% Similarity=0.187 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 253
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.63 E-value=0.013 Score=60.96 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 254
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.61 E-value=0.01 Score=59.62 Aligned_cols=22 Identities=14% Similarity=-0.124 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999996
No 255
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.59 E-value=0.013 Score=61.14 Aligned_cols=22 Identities=27% Similarity=0.117 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999999995
No 256
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.56 E-value=0.013 Score=60.62 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 257
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.55 E-value=0.014 Score=60.87 Aligned_cols=22 Identities=36% Similarity=0.262 Sum_probs=20.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||||.|.|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999996
No 258
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.53 E-value=0.013 Score=61.16 Aligned_cols=22 Identities=23% Similarity=0.075 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.50 E-value=0.016 Score=54.84 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=19.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|.|+|+++||||||++.|-+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999773
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.47 E-value=0.013 Score=56.85 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+|+|+|+++||||||++.|.|.-
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999998854
No 261
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.46 E-value=0.013 Score=62.75 Aligned_cols=22 Identities=32% Similarity=0.129 Sum_probs=20.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+.|+||||||+.|.|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 4799999999999999999974
No 262
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.43 E-value=0.015 Score=60.45 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+|||||||+.|.|.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 263
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.42 E-value=0.012 Score=57.90 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|++++|||||++.|.|.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 264
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.42 E-value=0.015 Score=60.58 Aligned_cols=22 Identities=32% Similarity=0.188 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+|||||||+.|.|.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999995
No 265
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.37 E-value=0.015 Score=57.17 Aligned_cols=36 Identities=25% Similarity=0.150 Sum_probs=25.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC---eeeecCCCCCCCCcccce
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN---FREMDAFKGRSQTTKGIW 41 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk---fsims~~~~r~QTTrGiw 41 (772)
++.|+|+++||||||.|.|.... +.. ..+-|||..-
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~~~~~~-----~~~~ttR~~~ 52 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFPSRFRF-----SISCTTRNKR 52 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCTTTEEE-----CCEEECSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCccceee-----eeeecCCCCC
Confidence 47899999999999999997532 332 2355777543
No 266
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.36 E-value=0.016 Score=60.98 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999995
No 267
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.35 E-value=0.017 Score=58.64 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.8
Q ss_pred CEEEeCCCCCChHHHHhHHh---CCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLF---GTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf---Gtk 23 (772)
+|+|+|+++||||||++.|. |..
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 47899999999999999999 854
No 268
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.28 E-value=0.015 Score=62.07 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+++||||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 4899999999999999999984
No 269
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.21 E-value=0.016 Score=60.26 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=20.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+.+|||||||+.|.|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 4789999999999999999983
No 270
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.06 E-value=0.022 Score=56.39 Aligned_cols=22 Identities=18% Similarity=0.058 Sum_probs=20.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|++++|||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999999984
No 271
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.04 E-value=0.018 Score=57.42 Aligned_cols=21 Identities=19% Similarity=0.042 Sum_probs=19.1
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+++|+|+++||||||++.|.+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999983
No 272
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.00 E-value=0.02 Score=56.25 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=19.0
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|+|+++||||||++.|.|
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999976
No 273
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.95 E-value=0.022 Score=56.48 Aligned_cols=35 Identities=40% Similarity=0.285 Sum_probs=27.2
Q ss_pred EEEeCCCCCChHHHHhHHhCC---CeeeecCCCCCCCCcccce
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT---NFREMDAFKGRSQTTKGIW 41 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt---kfsims~~~~r~QTTrGiw 41 (772)
|.|+||.||||+||+++|+.. +|.. +.+-|||-.=
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~-----svs~TTR~pR 41 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGF-----SVSSTTRTPR 41 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEE-----CCCEECSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEE-----EEEEeccCCC
Confidence 789999999999999999853 4543 3567888653
No 274
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.87 E-value=0.028 Score=55.20 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=24.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC--Ceeeec
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT--NFREMD 28 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt--kfsims 28 (772)
+|+|+|+++||||||.+.|.+. .+.+++
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 3789999999999999999996 677765
No 275
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.83 E-value=0.021 Score=55.08 Aligned_cols=21 Identities=29% Similarity=0.096 Sum_probs=19.1
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
++.|+|+++||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 368999999999999999986
No 276
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.82 E-value=0.023 Score=59.19 Aligned_cols=23 Identities=30% Similarity=0.208 Sum_probs=21.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.++||||||+.|.|.-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
No 277
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.76 E-value=0.016 Score=61.92 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+.++|||||||.|.|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 4899999999999999999994
No 278
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.75 E-value=0.022 Score=60.29 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999996
No 279
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.73 E-value=0.023 Score=56.29 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=20.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+++||||||++.|.+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 3789999999999999999985
No 280
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.65 E-value=0.02 Score=57.46 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=14.9
Q ss_pred CEEEeCCCCCChHHHHhHHh-CC
Q 004126 1 MCHIFFVIMTGKSTLLNHLF-GT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf-Gt 22 (772)
+++|+|+.+||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999999 85
No 281
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.62 E-value=0.025 Score=53.79 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.9
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
++.|+|+++||||||++.|.+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999865
No 282
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.51 E-value=0.029 Score=60.31 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+||||||||.|.|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 283
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.46 E-value=0.038 Score=54.10 Aligned_cols=27 Identities=22% Similarity=0.146 Sum_probs=22.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeec
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMD 28 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims 28 (772)
|+|+|+++|||||+.+.|-+..+.+++
T Consensus 5 i~l~G~~GsGKST~~~~La~lg~~~id 31 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTDLGVPLVD 31 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHTTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCcccc
Confidence 789999999999999999885554444
No 284
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.43 E-value=0.035 Score=54.12 Aligned_cols=27 Identities=22% Similarity=0.049 Sum_probs=22.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeec
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMD 28 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims 28 (772)
|+|+|+++|||||+.+.|.+..+.+++
T Consensus 4 i~i~G~~GsGKSTl~~~L~~~g~~~i~ 30 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRELGAYVLD 30 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCcCHHHHHHHHHHCCCEEEE
Confidence 789999999999999999885455544
No 285
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.41 E-value=0.03 Score=61.07 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5799999999999999999995
No 286
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.35 E-value=0.53 Score=45.35 Aligned_cols=113 Identities=21% Similarity=0.187 Sum_probs=64.6
Q ss_pred EEEe-CCCCCChHHHHhHH------hCCCeeeecCCCCCCCCcccceeeEec--------------------CCCCcEEE
Q 004126 2 CHIF-FVIMTGKSTLLNHL------FGTNFREMDAFKGRSQTTKGIWMARCA--------------------GIEPCTLI 54 (772)
Q Consensus 2 VaIv-G~~ssGKSTLLN~L------fGtkfsims~~~~r~QTTrGiw~~i~~--------------------~~~~qil~ 54 (772)
|+|. +..|+||||+--.| -|.++-++|.- +|.+-..|++... .....+++
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~vi 80 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD---PQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAI 80 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC---TTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECC---CCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEE
Confidence 5566 67799999996655 37888888853 5555444543211 13478999
Q ss_pred EecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCC
Q 004126 55 MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 134 (772)
Q Consensus 55 lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~ 134 (772)
+||||..+ ..+..++..||.+|+-+-....+ . .-..+++.+.+. +.+ ....++.+|+|+++.
T Consensus 81 iD~~~~~~------------~~~~~~l~~ad~viiv~~~~~~~--~-~~~~~~~~l~~~--~~~-~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 81 VDGAGSLS------------VITSAAVMVSDLVIIPVTPSPLD--F-SAAGSVVTVLEA--QAY-SRKVEARFLITRKIE 142 (206)
T ss_dssp EECCSSSS------------HHHHHHHHHCSEEEEEECSCTTT--H-HHHHHHHHHHTT--SCG-GGCCEEEEEECSBCT
T ss_pred EECCCCCC------------HHHHHHHHHCCEEEEEecCCHHH--H-HHHHHHHHHHHH--HHh-CCCCcEEEEEeccCC
Confidence 99998651 13345667799887765432111 1 111122222221 000 123456899999974
Q ss_pred C
Q 004126 135 T 135 (772)
Q Consensus 135 t 135 (772)
.
T Consensus 143 ~ 143 (206)
T 4dzz_A 143 M 143 (206)
T ss_dssp T
T ss_pred C
Confidence 3
No 287
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.35 E-value=0.031 Score=61.18 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4799999999999999999995
No 288
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.35 E-value=0.029 Score=53.97 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+-++|||||++.|.|.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999954
No 289
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.34 E-value=0.028 Score=57.06 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+.+||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 290
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.32 E-value=0.034 Score=51.77 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=17.8
Q ss_pred CEEEeCCCCCChHHHHhHH
Q 004126 1 MCHIFFVIMTGKSTLLNHL 19 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~L 19 (772)
+|.|+|+++|||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999999
No 291
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.28 E-value=0.032 Score=60.87 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5799999999999999999995
No 292
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.24 E-value=0.033 Score=61.06 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 5799999999999999999995
No 293
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.23 E-value=0.029 Score=61.02 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=19.7
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|+|+.+||||||||.|.|
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999988
No 294
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.22 E-value=0.035 Score=60.23 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.+||||||||.|.|.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999984
No 295
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.21 E-value=0.031 Score=61.07 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5899999999999999999994
No 296
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.21 E-value=0.032 Score=54.60 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=19.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
++.|+|+.|||||||+|+|++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 3789999999999999999974
No 297
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.18 E-value=0.29 Score=54.56 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=23.2
Q ss_pred CEEEeCCCCCChHHHHhHHh------CCCeeeecC
Q 004126 1 MCHIFFVIMTGKSTLLNHLF------GTNFREMDA 29 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf------Gtkfsims~ 29 (772)
++.++|++++||||++..|. |.++.+++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 36789999999999999987 456666654
No 298
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.17 E-value=0.42 Score=47.27 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=62.9
Q ss_pred EEEe-CCCCCChHHHHhHHh------CCCeeeecCCCCCCCCcccceeeE-------ec-------CCCCcEEEEecCCC
Q 004126 2 CHIF-FVIMTGKSTLLNHLF------GTNFREMDAFKGRSQTTKGIWMAR-------CA-------GIEPCTLIMDLEGT 60 (772)
Q Consensus 2 VaIv-G~~ssGKSTLLN~Lf------Gtkfsims~~~~r~QTTrGiw~~i-------~~-------~~~~qil~lDteG~ 60 (772)
|+|+ ++.|+||||+--.|- | ++-++|.- +|.+-..|++. .+ .....++++||||.
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D---~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~ 78 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGD---PNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQAR 78 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEEC---TTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECC
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECC---CCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCC
Confidence 4554 778999999976664 7 88888753 55554455432 10 13478999999987
Q ss_pred -CCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCC
Q 004126 61 -DGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 135 (772)
Q Consensus 61 -~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t 135 (772)
.+. .+..++..||.+|+.+-.... +-..+.+ ..+. ++-. ...++.+|+|+++..
T Consensus 79 ~~~~------------~~~~~l~~aD~viiv~~~~~~-----~~~~~~~-~~~~-l~~~--~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 79 PEDE------------DLEALADGCDLLVIPSTPDAL-----ALDALML-TIET-LQKL--GNNRFRILLTIIPPY 133 (209)
T ss_dssp CSSS------------HHHHHHHTSSEEEEEECSSHH-----HHHHHHH-HHHH-HHHT--CSSSEEEEECSBCCT
T ss_pred cCcH------------HHHHHHHHCCEEEEEecCCch-----hHHHHHH-HHHH-HHhc--cCCCEEEEEEecCCc
Confidence 421 223466789998876643111 1111111 1111 1111 145588999999654
No 299
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.16 E-value=0.035 Score=61.13 Aligned_cols=22 Identities=32% Similarity=0.232 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 5799999999999999999995
No 300
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.16 E-value=0.035 Score=60.66 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5789999999999999999995
No 301
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.07 E-value=0.037 Score=60.72 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5799999999999999999995
No 302
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.04 E-value=0.033 Score=59.29 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=19.4
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|+|+|++|||||||++.|.|
T Consensus 104 vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999985
No 303
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.02 E-value=0.031 Score=59.17 Aligned_cols=22 Identities=27% Similarity=0.154 Sum_probs=20.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+++||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999883
No 304
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.97 E-value=0.039 Score=51.75 Aligned_cols=21 Identities=19% Similarity=-0.157 Sum_probs=18.6
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|+|+++|||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998853
No 305
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.92 E-value=0.041 Score=54.38 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=21.8
Q ss_pred EEEeCCCCCChHHHHhHHhCC-Ceeeec
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT-NFREMD 28 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt-kfsims 28 (772)
|+|+|+++|||||+.+.|.+. .+...+
T Consensus 8 i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 789999999999999999763 444443
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.90 E-value=0.037 Score=54.27 Aligned_cols=22 Identities=27% Similarity=0.114 Sum_probs=19.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|.|+|+++||||||++.|.|.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 307
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.73 E-value=0.042 Score=52.63 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=19.2
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
+.|+|++|+|||||++++.|.
T Consensus 41 ~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 41 LTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEECCSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999874
No 308
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.66 E-value=0.041 Score=60.71 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999999995
No 309
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.64 E-value=0.031 Score=60.72 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5799999999999999999995
No 310
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.60 E-value=0.057 Score=50.96 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=22.2
Q ss_pred CEEEeCCCCCChHHHHhHHhC--CCeeeec
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG--TNFREMD 28 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG--tkfsims 28 (772)
+|.|+|+|+|||||+.+.|.. ..+.+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 378999999999999999985 4454443
No 311
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.58 E-value=0.041 Score=61.21 Aligned_cols=22 Identities=23% Similarity=0.037 Sum_probs=20.2
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|.|+|+.+||||||||.|.|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999984
No 312
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.54 E-value=0.038 Score=59.65 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=19.7
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
++|+|+.|+|||||++.|.|.
T Consensus 173 ~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 173 VAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEECCTTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999994
No 313
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.54 E-value=0.041 Score=60.08 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=19.7
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|+|+|+.+||||||||.|.|
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999998
No 314
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.53 E-value=0.044 Score=53.72 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=19.0
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
++.|+|++++|||||++.|.|
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999984
No 315
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.51 E-value=0.039 Score=57.35 Aligned_cols=21 Identities=19% Similarity=-0.004 Sum_probs=19.4
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
++.|+|++++|||||++.|.|
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 316
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.42 E-value=0.043 Score=53.98 Aligned_cols=21 Identities=33% Similarity=0.233 Sum_probs=19.3
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|+|+|+++||||||++.|.|
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 317
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.37 E-value=0.056 Score=55.36 Aligned_cols=24 Identities=21% Similarity=0.047 Sum_probs=21.1
Q ss_pred CEEEeCCCCCChHHHHhHHh---CCCe
Q 004126 1 MCHIFFVIMTGKSTLLNHLF---GTNF 24 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf---Gtkf 24 (772)
+|+|+|+.+||||||++.|. |..+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 38999999999999999999 7544
No 318
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.33 E-value=0.047 Score=58.77 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=20.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|++|+|||||++.|.|.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999973
No 319
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.33 E-value=0.048 Score=57.92 Aligned_cols=22 Identities=32% Similarity=0.167 Sum_probs=19.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+++||||||++.|.|.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 320
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.30 E-value=0.029 Score=60.99 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999995
No 321
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.26 E-value=0.024 Score=55.34 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+.+||||||++.|.|.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999984
No 322
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.23 E-value=0.057 Score=52.04 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=18.9
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|+|+|.++|||||+.+.|-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 478999999999999998865
No 323
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.11 E-value=0.064 Score=52.35 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=18.9
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|+|+++||||||.+.|.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 324
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.07 E-value=0.076 Score=56.45 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
++.|+|+-+||||||||+|.|.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999975
No 325
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.05 E-value=0.057 Score=51.48 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=18.7
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|.|+++|||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999854
No 326
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.00 E-value=0.054 Score=58.21 Aligned_cols=21 Identities=29% Similarity=0.137 Sum_probs=19.2
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|+|+|+++||||||++.|-|
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 327
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.00 E-value=0.048 Score=54.85 Aligned_cols=22 Identities=36% Similarity=0.227 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
|++|+|+-+||||||++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999885
No 328
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.99 E-value=0.055 Score=51.25 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=19.4
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
+.|+|++++|||||++.+.|.
T Consensus 39 ~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 39 IYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEESSSTTTTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999984
No 329
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.91 E-value=0.059 Score=61.77 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||||.|.|.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999995
No 330
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.87 E-value=0.067 Score=50.98 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=18.5
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|.|+++|||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999843
No 331
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.65 E-value=0.064 Score=60.36 Aligned_cols=22 Identities=27% Similarity=0.123 Sum_probs=20.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+.+|||||||+.|.|.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999985
No 332
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.56 E-value=0.084 Score=52.12 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=22.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeec
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMD 28 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims 28 (772)
+|+|.|.++|||||+.+.|-+..+.+++
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~lg~~~id 33 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFADLGINVID 33 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHcCCEEEE
Confidence 4789999999999999999764444444
No 333
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.50 E-value=0.072 Score=62.03 Aligned_cols=22 Identities=32% Similarity=0.211 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||||.|.|.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4789999999999999999995
No 334
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.49 E-value=0.075 Score=60.60 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=20.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
.+.|+|+.|||||||||.|.|.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999983
No 335
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.37 E-value=0.076 Score=60.81 Aligned_cols=22 Identities=36% Similarity=0.237 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 336
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.28 E-value=0.31 Score=51.24 Aligned_cols=118 Identities=13% Similarity=0.027 Sum_probs=68.7
Q ss_pred CCcccceeeEecCCCCcEEEEecCCCCCcCCCCCccHHHHHHHHHHhhcccEEEEeeccccccccccCCHHHHHHHHHHH
Q 004126 35 QTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVM 114 (772)
Q Consensus 35 QTTrGiw~~i~~~~~~qil~lDteG~~s~er~e~~~~fe~k~alfALa~sDvliiNl~~~dig~~~~~n~~lLktv~evn 114 (772)
..|-|.+..+....+..+.+.|| + ||..... ...++.+|++|+.....+.. .....+......
T Consensus 48 ~pTiGd~~~~~~~~~~~~~iwD~---q--er~~~l~-------~~~~~~ad~vilV~D~~~~~----~s~~~l~~~l~~- 110 (301)
T 1u0l_A 48 KIYVGDRVEYTPDETGSGVIENV---L--HRKNLLT-------KPHVANVDQVILVVTVKMPE----TSTYIIDKFLVL- 110 (301)
T ss_dssp CCCTTCEEEEECCCSSSEEEEEE---C--CCSCEET-------TTTEESCCEEEEEECSSTTC----CCHHHHHHHHHH-
T ss_pred CCCCccEEEEEEcCCCeEEEEEE---c--cccceee-------ccccccCCEEEEEEeCCCCC----CCHHHHHHHHHH-
Confidence 45677776654334458899999 3 3321111 13578999998866543321 122233222210
Q ss_pred HhhcCCCCccEEEEEeCCCCCChhchHHHHHHHHHHHh--hcCCCCCCccCCCchhhHHHH
Q 004126 115 MRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW--DSVPKPQAHMETPLSEFFNVE 173 (772)
Q Consensus 115 l~lf~~~k~~llfVIrd~d~t~~e~l~~~l~~~l~~iw--~~i~kpsa~~~~~l~dlf~~~ 173 (772)
++. ...|+++|+||+|+.+...++ .+.+..+.+- ..+...|+..+.+++++|+..
T Consensus 111 ~~~---~~~piilv~NK~DL~~~~~v~-~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 111 AEK---NELETVMVINKMDLYDEDDLR-KVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL 167 (301)
T ss_dssp HHH---TTCEEEEEECCGGGCCHHHHH-HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHH---CCCCEEEEEeHHHcCCchhHH-HHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHh
Confidence 111 468999999999987654331 1222222221 346678999999999999875
No 337
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.19 E-value=0.077 Score=51.82 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=19.4
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
++.|+|++++|||||+++|.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999987
No 338
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.11 E-value=0.077 Score=57.88 Aligned_cols=21 Identities=33% Similarity=0.178 Sum_probs=19.5
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+++|+|+++||||||++.|.|
T Consensus 159 vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHh
Confidence 478999999999999999987
No 339
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.03 E-value=0.081 Score=50.64 Aligned_cols=20 Identities=30% Similarity=0.164 Sum_probs=18.0
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|+|+++|||||+.+.|.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999984
No 340
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.03 E-value=0.09 Score=50.95 Aligned_cols=21 Identities=19% Similarity=0.006 Sum_probs=18.5
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|.|+++|||||+.+.|-.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999853
No 341
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.98 E-value=0.094 Score=50.08 Aligned_cols=20 Identities=20% Similarity=0.014 Sum_probs=18.2
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.++|+++|||||+.+.|-
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999986
No 342
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.96 E-value=0.039 Score=53.94 Aligned_cols=21 Identities=38% Similarity=0.314 Sum_probs=19.1
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|+|.|++|||||||++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999864
No 343
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.93 E-value=0.082 Score=55.78 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=19.3
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|+|+|+++||||||.+.|.+
T Consensus 33 ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998876
No 344
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.85 E-value=0.087 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
++.|+|++++|||||+..|.|.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999983
No 345
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.85 E-value=0.095 Score=50.34 Aligned_cols=21 Identities=24% Similarity=0.075 Sum_probs=18.9
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|.|+++|||||+.+.|-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 346
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=90.83 E-value=0.093 Score=60.41 Aligned_cols=22 Identities=23% Similarity=0.079 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.|+|||||+|.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999994
No 347
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.80 E-value=0.09 Score=60.28 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 348
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.78 E-value=0.094 Score=60.07 Aligned_cols=22 Identities=27% Similarity=0.224 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|+|.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999995
No 349
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.74 E-value=0.091 Score=61.12 Aligned_cols=22 Identities=32% Similarity=0.226 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++|||||||.|.|.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999995
No 350
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.72 E-value=0.085 Score=60.01 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=19.5
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+++|+|+.|||||||++.|.|
T Consensus 295 VI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHH
Confidence 478999999999999999987
No 351
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.62 E-value=0.088 Score=59.67 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999984
No 352
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.61 E-value=0.088 Score=60.60 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.|||||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 4799999999999999999995
No 353
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.60 E-value=0.1 Score=52.69 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=19.1
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
|.|+|++++|||||++.|.|.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999873
No 354
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.59 E-value=0.083 Score=60.99 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.|||||||||.|.|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999995
No 355
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.57 E-value=0.087 Score=60.95 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.|||||||+|.|.|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4799999999999999999994
No 356
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.49 E-value=0.11 Score=54.14 Aligned_cols=20 Identities=15% Similarity=-0.036 Sum_probs=18.8
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|.++|+||+|||||++.|.|
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 57999999999999999987
No 357
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.45 E-value=0.11 Score=49.63 Aligned_cols=21 Identities=19% Similarity=0.017 Sum_probs=19.0
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|+|.++|||||+++.|-+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 358
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.39 E-value=0.11 Score=50.70 Aligned_cols=21 Identities=19% Similarity=0.051 Sum_probs=18.5
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|+|+++||||||...|-+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999998863
No 359
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.38 E-value=0.11 Score=50.22 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=19.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|.|.|+++|||||+.+.|-..
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 360
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.37 E-value=0.11 Score=60.58 Aligned_cols=22 Identities=27% Similarity=0.224 Sum_probs=20.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999995
No 361
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.35 E-value=0.11 Score=49.10 Aligned_cols=20 Identities=20% Similarity=0.029 Sum_probs=18.2
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|.|+|+++|||||+.+.|-.
T Consensus 6 i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999864
No 362
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.19 E-value=0.095 Score=54.11 Aligned_cols=21 Identities=24% Similarity=0.070 Sum_probs=19.4
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
++.|+|++++|||||++++.|
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999997
No 363
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.13 E-value=0.083 Score=60.82 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.|+|||||+|.|.|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4799999999999999999994
No 364
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.07 E-value=0.12 Score=49.15 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=17.8
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|.|.|+|||||+.+.|.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998874
No 365
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.94 E-value=0.13 Score=49.09 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=18.5
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|.|.++|||||+.+.|-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998854
No 366
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.90 E-value=0.15 Score=48.61 Aligned_cols=20 Identities=25% Similarity=0.009 Sum_probs=18.3
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|+|+++|||||+.+.|.
T Consensus 13 ~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999886
No 367
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.74 E-value=0.16 Score=47.66 Aligned_cols=21 Identities=14% Similarity=-0.069 Sum_probs=18.4
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|.|.++|||||+.+.|-.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998843
No 368
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.72 E-value=0.14 Score=49.29 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=18.8
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|+|.++|||||+.+.|.+
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 369
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.72 E-value=0.097 Score=60.47 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+.++|||||+|.|.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999994
No 370
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.67 E-value=0.12 Score=50.23 Aligned_cols=20 Identities=25% Similarity=0.036 Sum_probs=18.1
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|.|.++|||||+.+.|-
T Consensus 12 ~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999885
No 371
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.66 E-value=0.14 Score=54.54 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=19.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
.+.++|+||+|||||++.|.|.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3679999999999999999874
No 372
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.65 E-value=0.13 Score=50.31 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.0
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
++.|+|++|||||||+++|.+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999985
No 373
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.55 E-value=0.16 Score=48.87 Aligned_cols=28 Identities=29% Similarity=0.207 Sum_probs=22.7
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeec
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMD 28 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims 28 (772)
.|+|+|.++|||||+.+.|-...+.+++
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~g~~~id 37 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSWGYPVLD 37 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCEEEc
Confidence 3789999999999999999875554444
No 374
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.47 E-value=0.12 Score=49.22 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=18.8
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+..|+|+.++||||||.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999876
No 375
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.42 E-value=0.14 Score=59.57 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=20.1
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
++|+|+.++||||||+.|.|.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 799999999999999999995
No 376
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.38 E-value=0.15 Score=52.52 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=19.1
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
|.|+|++++|||||++.|.|.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 579999999999999999873
No 377
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.35 E-value=0.14 Score=49.12 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=18.0
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|+|+++|||||+.+.|-
T Consensus 11 ~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999885
No 378
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.33 E-value=0.14 Score=49.95 Aligned_cols=20 Identities=30% Similarity=0.130 Sum_probs=18.3
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|.|.++|||||+.+.|-
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999986
No 379
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.17 E-value=0.13 Score=56.30 Aligned_cols=21 Identities=29% Similarity=0.173 Sum_probs=19.4
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
++.|+|++|+|||||++.|.|
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999987
No 380
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.16 E-value=0.18 Score=47.87 Aligned_cols=20 Identities=30% Similarity=0.197 Sum_probs=17.8
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|.|+|+++|||||+...|-.
T Consensus 7 i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999988853
No 381
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.15 E-value=0.16 Score=51.46 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.2
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
||+|.|+++|||||+++.|..
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 382
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.07 E-value=0.15 Score=49.02 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=18.4
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|.|+++|||||+.+.|-.
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998853
No 383
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.93 E-value=0.18 Score=49.39 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=17.4
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
|.|.|+++|||||+.+.|.
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999999984
No 384
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.85 E-value=0.18 Score=48.69 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.5
Q ss_pred EEEeCCCCCChHHHHhHHhCC--Ceeeec
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT--NFREMD 28 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt--kfsims 28 (772)
|.|+|+++|||||+.+.|-.. .+.+++
T Consensus 13 I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 689999999999999999765 566555
No 385
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.83 E-value=0.15 Score=50.68 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=18.3
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|+|+++|||||+.+.|.
T Consensus 9 ~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999986
No 386
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.78 E-value=0.14 Score=55.45 Aligned_cols=22 Identities=36% Similarity=0.286 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
.++|+|+.++||||||+.|.|.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999995
No 387
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.54 E-value=0.15 Score=57.06 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||+.|.|.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999995
No 388
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.38 E-value=0.17 Score=49.81 Aligned_cols=21 Identities=29% Similarity=0.127 Sum_probs=18.9
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|+|+++|||||+.+.|.+
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999865
No 389
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.35 E-value=0.2 Score=49.58 Aligned_cols=20 Identities=20% Similarity=-0.003 Sum_probs=18.2
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|+|+++|||||+.+.|.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999885
No 390
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.32 E-value=0.19 Score=48.81 Aligned_cols=20 Identities=20% Similarity=-0.019 Sum_probs=17.9
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|+|+|+|||||+.+.|-
T Consensus 22 ~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999884
No 391
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.28 E-value=0.18 Score=47.94 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=18.3
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|.|+++|||||+.+.|-.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998853
No 392
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.09 E-value=0.23 Score=48.84 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=17.5
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
|.|.|+|+|||||+.+.|.
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999999984
No 393
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.00 E-value=0.25 Score=46.26 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=17.9
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|.|.|.++|||||+.+.|-.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998843
No 394
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.99 E-value=0.16 Score=48.13 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=14.0
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|.|.++|||||+.+.|-
T Consensus 7 ~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp EEEEECCC----CHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999985
No 395
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.93 E-value=0.21 Score=51.28 Aligned_cols=21 Identities=24% Similarity=0.123 Sum_probs=18.5
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|+|.|||||||+.+.|..
T Consensus 6 lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999864
No 396
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=87.87 E-value=0.049 Score=55.64 Aligned_cols=21 Identities=19% Similarity=0.026 Sum_probs=19.2
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
++|+|+.++||||||+.|.|.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999984
No 397
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.85 E-value=0.22 Score=49.77 Aligned_cols=20 Identities=30% Similarity=0.021 Sum_probs=18.0
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|.|+++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999884
No 398
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.72 E-value=0.22 Score=48.33 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=18.2
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|.|+++|||||+.+.|.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999886
No 399
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.71 E-value=0.18 Score=54.49 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
++.|+|+++||||||+++|.|.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 400
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.68 E-value=0.25 Score=47.08 Aligned_cols=19 Identities=16% Similarity=0.189 Sum_probs=17.5
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
|.|+|+++|||||+-+.|.
T Consensus 8 i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999999884
No 401
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.61 E-value=0.23 Score=49.14 Aligned_cols=20 Identities=20% Similarity=-0.026 Sum_probs=17.8
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|+|+|+|||||+.+.|-
T Consensus 6 ~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998884
No 402
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.58 E-value=0.24 Score=51.12 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=19.0
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
.|+|+|+++||||||.+.|-+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999965
No 403
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.16 E-value=0.15 Score=62.31 Aligned_cols=22 Identities=36% Similarity=0.292 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|+|+.|+||||||+.|.|.
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999995
No 404
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.06 E-value=0.28 Score=51.01 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=20.1
Q ss_pred EEEeCCCCCChHHHHhHHh---CCCeeee
Q 004126 2 CHIFFVIMTGKSTLLNHLF---GTNFREM 27 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf---Gtkfsim 27 (772)
|-|.|++|+|||||..++. |..|..+
T Consensus 41 vll~G~~GtGKT~la~~i~~~~~~~~~~~ 69 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVT 69 (324)
T ss_dssp CEEECCTTCCCHHHHHHHHHHHTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 5689999999999999984 4444433
No 405
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.91 E-value=0.24 Score=50.78 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=18.1
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
+.|+|+++||||||-+.|.+
T Consensus 4 i~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998864
No 406
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.72 E-value=0.32 Score=46.40 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=17.6
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
.|.|+|.|+|||||+-..|-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 37899999999999988874
No 407
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=86.41 E-value=0.2 Score=58.57 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=18.1
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|+|+|+.+||||||||.++
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 58999999999999999765
No 408
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=86.35 E-value=0.36 Score=44.96 Aligned_cols=21 Identities=14% Similarity=0.034 Sum_probs=18.5
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
|.|.|++|+|||||++++...
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998763
No 409
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.29 E-value=0.32 Score=45.92 Aligned_cols=19 Identities=32% Similarity=0.308 Sum_probs=17.4
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
..|+|+.++||||||.+|.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999985
No 410
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.14 E-value=0.25 Score=51.46 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=22.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCCCeeeec
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTNFREMD 28 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtkfsims 28 (772)
+|.|.|+++|||||+.+.|-...+.+++
T Consensus 77 iI~I~G~~GSGKSTva~~La~lg~~~id 104 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKNLGAYIID 104 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCcEEe
Confidence 3789999999999999999744444443
No 411
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.14 E-value=0.31 Score=48.03 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=17.4
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
|.|.|+|+|||||+.+.|.
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999884
No 412
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.09 E-value=0.3 Score=50.03 Aligned_cols=19 Identities=26% Similarity=0.051 Sum_probs=17.9
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
|+|.|+++||||||.+.|-
T Consensus 12 i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999886
No 413
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.95 E-value=0.28 Score=52.17 Aligned_cols=21 Identities=29% Similarity=0.138 Sum_probs=18.9
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
++.|+|++++||||++..|.|
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHH
Confidence 478999999999999999875
No 414
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.74 E-value=0.3 Score=48.38 Aligned_cols=20 Identities=15% Similarity=-0.029 Sum_probs=17.8
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|+|+|+|||||+.+.|-
T Consensus 7 ~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999883
No 415
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.68 E-value=0.27 Score=50.16 Aligned_cols=20 Identities=15% Similarity=-0.160 Sum_probs=18.0
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
+.|+|+|+|||||+.+.|.+
T Consensus 35 i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999864
No 416
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.57 E-value=0.32 Score=48.15 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=17.1
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
++.|+|+|++|||||+.++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36799999999999977765
No 417
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.37 E-value=0.27 Score=62.09 Aligned_cols=22 Identities=23% Similarity=0.002 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
.|+|||+.|||||||++.|+|-
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 3899999999999999999983
No 418
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.26 E-value=0.32 Score=48.05 Aligned_cols=28 Identities=25% Similarity=0.138 Sum_probs=22.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCC-Ceeeec
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT-NFREMD 28 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt-kfsims 28 (772)
.|.|.|.++|||||+-+.|-.. .+.+++
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 3789999999999999988654 455554
No 419
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=85.16 E-value=0.36 Score=46.60 Aligned_cols=20 Identities=20% Similarity=0.105 Sum_probs=18.2
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|+|.|.++|||||+.+.|-+
T Consensus 5 i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998855
No 420
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=84.95 E-value=0.36 Score=50.50 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=18.1
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|.|+|+||||||||.+.|..
T Consensus 36 ivl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999963
No 421
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=84.79 E-value=0.37 Score=49.77 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=22.2
Q ss_pred CEEEeCCCCCChHHHHhHHhC--CCeeeec
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG--TNFREMD 28 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG--tkfsims 28 (772)
+|.|+|+|+|||||+.+.|.. ..+..++
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 378999999999999999975 3455554
No 422
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.76 E-value=0.38 Score=48.12 Aligned_cols=20 Identities=20% Similarity=0.009 Sum_probs=17.8
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
+|.|+|+++|||||+.+.|-
T Consensus 18 ~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999884
No 423
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=84.67 E-value=0.32 Score=59.51 Aligned_cols=23 Identities=26% Similarity=0.105 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+++|+|+.|+||||||+.|.|-.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999643
No 424
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=84.49 E-value=0.4 Score=52.02 Aligned_cols=19 Identities=21% Similarity=0.065 Sum_probs=17.4
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
+.|+|+.++||||||++|.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999976
No 425
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.41 E-value=0.32 Score=55.17 Aligned_cols=19 Identities=16% Similarity=-0.019 Sum_probs=17.3
Q ss_pred CEEEeCCCCCChHHHHhHH
Q 004126 1 MCHIFFVIMTGKSTLLNHL 19 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~L 19 (772)
+++|+|+++||||||++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999994
No 426
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.93 E-value=0.46 Score=47.98 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=18.3
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|.|+|+||+|||||+.+|.+
T Consensus 48 vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 56899999999999999976
No 427
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.86 E-value=0.45 Score=47.74 Aligned_cols=20 Identities=25% Similarity=0.052 Sum_probs=18.4
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|+|+|+++|||||+.+.|-+
T Consensus 19 i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998875
No 428
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=83.83 E-value=0.44 Score=48.39 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=18.5
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|+|.|+++|||||+-+.|-.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998854
No 429
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=83.82 E-value=0.37 Score=60.76 Aligned_cols=22 Identities=18% Similarity=0.003 Sum_probs=20.3
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+|+|||+.|||||||++.|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
No 430
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=83.81 E-value=2.4 Score=41.69 Aligned_cols=28 Identities=18% Similarity=0.051 Sum_probs=21.8
Q ss_pred EEEeCCCCCChHHHHhHHh------CCCeeeecC
Q 004126 2 CHIFFVIMTGKSTLLNHLF------GTNFREMDA 29 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf------Gtkfsims~ 29 (772)
|+|-|+.|+||||+--.|- |.++-++|.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~ 36 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDG 36 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5678999999999977764 667766664
No 431
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=83.79 E-value=0.32 Score=49.63 Aligned_cols=21 Identities=38% Similarity=0.216 Sum_probs=19.0
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|+|.|.++|||||+.+.|-.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998865
No 432
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=83.74 E-value=0.39 Score=52.87 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=19.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+++|+|+.++||||||++|.|.
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4689999999999999999874
No 433
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=83.65 E-value=0.54 Score=44.14 Aligned_cols=19 Identities=26% Similarity=0.210 Sum_probs=17.3
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
|.|.|.++|||||+-+.|-
T Consensus 10 i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEESCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999999884
No 434
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.65 E-value=0.44 Score=50.09 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
.|.|.|++|+|||||++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 435
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=83.16 E-value=0.49 Score=48.00 Aligned_cols=20 Identities=20% Similarity=-0.041 Sum_probs=18.0
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|.|.|+|+|||||+-..|..
T Consensus 32 I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999853
No 436
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.04 E-value=0.42 Score=60.40 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
.|+|||+.|||||||+|.|.|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 4799999999999999999984
No 437
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.02 E-value=0.45 Score=52.56 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=17.9
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
++.|+|++++|||||+.+|.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999774
No 438
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=82.88 E-value=0.16 Score=55.20 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=18.7
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+++|+|+.++||||||+.|.|
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999988865
No 439
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.83 E-value=0.41 Score=54.26 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=19.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
++.|+|++++|||||++.+.|.
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3689999999999999999974
No 440
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.73 E-value=0.59 Score=45.65 Aligned_cols=20 Identities=10% Similarity=0.260 Sum_probs=18.1
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|-|.|++|+|||||+..+..
T Consensus 55 ~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999875
No 441
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.39 E-value=0.57 Score=45.29 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=18.1
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|-|.|++|+|||||+.++.+
T Consensus 57 ~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 57 LYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999886
No 442
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=82.21 E-value=0.59 Score=46.25 Aligned_cols=19 Identities=32% Similarity=0.308 Sum_probs=17.2
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
..|+|+.++||||||.+|.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5799999999999999874
No 443
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=82.20 E-value=4.3 Score=42.03 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=21.8
Q ss_pred EEEeCCCCCChHHHHhHHh------CCCeeeecC
Q 004126 2 CHIFFVIMTGKSTLLNHLF------GTNFREMDA 29 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf------Gtkfsims~ 29 (772)
|+|.|+.|+||||+-=.|- |.++-++|.
T Consensus 44 I~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~ 77 (307)
T 3end_A 44 FAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGC 77 (307)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 6777999999999865543 778877765
No 444
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.14 E-value=0.59 Score=50.63 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=19.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtk 23 (772)
+.|+|++++|||||++.|.+.-
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998743
No 445
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=82.14 E-value=0.51 Score=59.49 Aligned_cols=22 Identities=23% Similarity=0.030 Sum_probs=20.4
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
.|+|+|+.|+|||||++.|+|.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3799999999999999999994
No 446
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.13 E-value=0.52 Score=47.33 Aligned_cols=21 Identities=33% Similarity=0.169 Sum_probs=19.0
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|+|.|..+|||||+.+.|..
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999874
No 447
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=81.87 E-value=0.32 Score=55.98 Aligned_cols=22 Identities=27% Similarity=0.135 Sum_probs=19.9
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
++.|+|+.+||||||++.|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 3789999999999999999884
No 448
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=81.49 E-value=0.62 Score=49.29 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
+.|.|++|+|||||++.+.+.
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999863
No 449
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=81.28 E-value=0.59 Score=43.57 Aligned_cols=21 Identities=14% Similarity=-0.020 Sum_probs=18.3
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
|-|.|++|+|||||+..+...
T Consensus 46 vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 46 PILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEESCGGGCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999988663
No 450
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.99 E-value=2.9 Score=42.80 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=18.2
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|-|.|+||+|||||.+++.+
T Consensus 57 vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 57 LLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp EEEESSSSSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 56899999999999999976
No 451
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=80.72 E-value=0.58 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.160 Sum_probs=20.6
Q ss_pred CEEEeCCCCCChHHHHhHHhCCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGTN 23 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGtk 23 (772)
++.|+|+.++||||||+.+.|..
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhh
Confidence 47899999999999999999853
No 452
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=80.66 E-value=0.58 Score=56.14 Aligned_cols=22 Identities=32% Similarity=0.093 Sum_probs=20.1
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
++.|+|+.++||||||+.+.|.
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4789999999999999999984
No 453
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=80.66 E-value=0.68 Score=46.45 Aligned_cols=20 Identities=25% Similarity=-0.021 Sum_probs=18.3
Q ss_pred CEEEeCCCCCChHHHHhHHh
Q 004126 1 MCHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf 20 (772)
||+|-|+++|||||+++.|.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58899999999999999984
No 454
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=80.63 E-value=0.94 Score=44.34 Aligned_cols=28 Identities=18% Similarity=0.075 Sum_probs=21.4
Q ss_pred CEEEeCCCCCChHHHHhHHhC-CCeeeec
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG-TNFREMD 28 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG-tkfsims 28 (772)
+|.|.|.++|||||+.+.|-. ..+..++
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 478999999999999988754 2344444
No 455
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=80.42 E-value=0.84 Score=43.89 Aligned_cols=20 Identities=15% Similarity=-0.029 Sum_probs=18.0
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
+.|.|++++|||||+..+..
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999875
No 456
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=80.15 E-value=0.46 Score=44.00 Aligned_cols=21 Identities=5% Similarity=-0.181 Sum_probs=18.2
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
|-|.|+||+|||+|..++...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 678999999999999888653
No 457
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=80.09 E-value=0.85 Score=47.79 Aligned_cols=20 Identities=25% Similarity=-0.051 Sum_probs=17.7
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|-|.|++|+|||||..++..
T Consensus 58 vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 56899999999999999853
No 458
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=79.96 E-value=0.74 Score=49.08 Aligned_cols=19 Identities=32% Similarity=0.308 Sum_probs=17.2
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
..|+|+.++||||||.+|.
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999874
No 459
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=79.93 E-value=0.67 Score=50.40 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.8
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
++.|+|+.++||||||++|.+.
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHh
Confidence 4689999999999999999874
No 460
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=79.76 E-value=0.63 Score=47.36 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=15.6
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
||+|-|+++|||||+.+.|..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp EEEEECCC---CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998853
No 461
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.30 E-value=0.69 Score=48.70 Aligned_cols=20 Identities=25% Similarity=0.079 Sum_probs=18.3
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
+.|.|++|+|||||++.|.|
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999887
No 462
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=79.22 E-value=0.96 Score=43.06 Aligned_cols=20 Identities=20% Similarity=-0.152 Sum_probs=18.0
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
+.|.|++|+|||||+..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999998875
No 463
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=79.13 E-value=0.67 Score=50.43 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.8
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
++.|+|+|++|||||+.++.+
T Consensus 63 i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999985
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=79.11 E-value=1.2 Score=44.91 Aligned_cols=35 Identities=20% Similarity=0.046 Sum_probs=27.6
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeecCCCCCCCCcc
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMDAFKGRSQTTK 38 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims~~~~r~QTTr 38 (772)
|.|+|++++|||||...|......+++. ...|-.|
T Consensus 37 ilI~GpsGsGKStLA~~La~~g~~iIsd--Ds~~v~~ 71 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRGHRLIAD--DRVDVYQ 71 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTTCEEEES--SEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCeEEec--chhheee
Confidence 6799999999999999998776677765 3444444
No 465
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=79.04 E-value=0.74 Score=49.14 Aligned_cols=29 Identities=24% Similarity=0.118 Sum_probs=23.2
Q ss_pred CEEEeCCCCCChHHHHhHHhC------CCeeeecC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG------TNFREMDA 29 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG------tkfsims~ 29 (772)
+++|+|++|+||||++..|.+ .++-+++.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 378999999999999998874 56666654
No 466
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=78.99 E-value=0.8 Score=50.46 Aligned_cols=21 Identities=19% Similarity=0.089 Sum_probs=18.7
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|+|+|+|||||+.+.|..
T Consensus 260 lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999875
No 467
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=78.59 E-value=0.77 Score=48.55 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=19.5
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
+.+|+|+.++||||||.+|...
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHT
T ss_pred cEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999853
No 468
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=78.38 E-value=0.82 Score=46.80 Aligned_cols=21 Identities=24% Similarity=0.089 Sum_probs=18.8
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
||+|.|+++|||||+++.|..
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999853
No 469
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=78.21 E-value=2.9 Score=46.56 Aligned_cols=37 Identities=11% Similarity=-0.015 Sum_probs=25.5
Q ss_pred CEEEeCCCCCChHHHHhHHh------CCCeeeecCCCCCCCCc
Q 004126 1 MCHIFFVIMTGKSTLLNHLF------GTNFREMDAFKGRSQTT 37 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~Lf------Gtkfsims~~~~r~QTT 37 (772)
++.|.|+||+|||||+-++. |.++-+.|...+..|..
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~ 241 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENI 241 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHH
Confidence 36799999999999976654 55666666544444433
No 470
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=77.75 E-value=0.9 Score=45.65 Aligned_cols=21 Identities=24% Similarity=0.020 Sum_probs=18.9
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
||++-|.++|||||+++.|..
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999864
No 471
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=77.73 E-value=0.94 Score=47.39 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=18.6
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
+-|.|+||+|||||++.+.+.
T Consensus 40 lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 568999999999999999863
No 472
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=77.54 E-value=1 Score=44.87 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=18.6
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
||+|=|..+|||||+.+.|..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999988763
No 473
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=77.27 E-value=0.8 Score=53.48 Aligned_cols=16 Identities=25% Similarity=0.220 Sum_probs=14.9
Q ss_pred CEEEeCCCCCChHHHH
Q 004126 1 MCHIFFVIMTGKSTLL 16 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLL 16 (772)
+++|+|+.++||||||
T Consensus 46 ~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHh
Confidence 4799999999999997
No 474
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=76.92 E-value=8.3 Score=38.98 Aligned_cols=28 Identities=29% Similarity=0.195 Sum_probs=20.1
Q ss_pred EEEe-CCCCCChHHHHhHHh------CCCeeeecC
Q 004126 2 CHIF-FVIMTGKSTLLNHLF------GTNFREMDA 29 (772)
Q Consensus 2 VaIv-G~~ssGKSTLLN~Lf------Gtkfsims~ 29 (772)
++|+ |+.++||||+--.|- |.++-++|.
T Consensus 21 I~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~ 55 (262)
T 2ph1_A 21 IAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDA 55 (262)
T ss_dssp EEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3444 577999999866654 777777764
No 475
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=76.64 E-value=0.99 Score=47.44 Aligned_cols=29 Identities=17% Similarity=0.016 Sum_probs=23.0
Q ss_pred CEEEeCCCCCChHHHHhHHhC------CCeeeecC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG------TNFREMDA 29 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG------tkfsims~ 29 (772)
+++|+|++++||||++..|.| .++.+.+.
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 368899999999999998875 46666554
No 476
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=76.13 E-value=1.2 Score=45.07 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=16.1
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
|-|+|+|+|||+|+-..|.
T Consensus 32 I~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEECCTTCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999876664
No 477
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=76.01 E-value=1 Score=45.41 Aligned_cols=21 Identities=33% Similarity=0.221 Sum_probs=18.9
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
||++-|+++|||||+.+.|..
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999864
No 478
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=75.90 E-value=4.9 Score=41.06 Aligned_cols=27 Identities=11% Similarity=-0.074 Sum_probs=19.9
Q ss_pred EEEeCCCCCChHHHHhHHh------CCCeeeec
Q 004126 2 CHIFFVIMTGKSTLLNHLF------GTNFREMD 28 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf------Gtkfsims 28 (772)
|-+.|++++||||++-++- |.++-+++
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 5578999999999955544 66665554
No 479
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=75.79 E-value=1.2 Score=46.77 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=18.9
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
|.|.|++|+|||||++.+...
T Consensus 47 vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 47 ALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp EEECBCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999863
No 480
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=75.75 E-value=0.77 Score=48.16 Aligned_cols=21 Identities=14% Similarity=-0.002 Sum_probs=15.3
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|+|.|+.+|||||+.+.|-.
T Consensus 7 iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998753
No 481
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=75.61 E-value=1.1 Score=46.50 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.8
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|.|++++|||||++.+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999875
No 482
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=75.51 E-value=1.2 Score=50.80 Aligned_cols=21 Identities=14% Similarity=-0.053 Sum_probs=19.0
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
.+.|+|.++|||||+||.|.+
T Consensus 169 HlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999986
No 483
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=75.47 E-value=1.1 Score=49.86 Aligned_cols=21 Identities=10% Similarity=0.040 Sum_probs=18.3
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
++.|.|+||+|||||+.++.+
T Consensus 205 liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999988764
No 484
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=75.35 E-value=1.4 Score=44.04 Aligned_cols=20 Identities=20% Similarity=-0.016 Sum_probs=16.5
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
+.|+|+|+|||+|+-..|..
T Consensus 3 Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999998777653
No 485
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=75.23 E-value=1.2 Score=45.99 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=18.6
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
+|.|.|+.++|||||++++..
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHH
Confidence 367999999999999999864
No 486
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=75.14 E-value=1.2 Score=50.67 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHhHHhCC
Q 004126 2 CHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGt 22 (772)
|.|+|+|++|||||+++|.|.
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999873
No 487
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=75.00 E-value=2.5 Score=46.84 Aligned_cols=20 Identities=30% Similarity=0.127 Sum_probs=17.9
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|-+.|+||+|||||..++..
T Consensus 170 vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 170 ILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999875
No 488
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=74.86 E-value=1.3 Score=49.33 Aligned_cols=20 Identities=15% Similarity=0.084 Sum_probs=18.1
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|.++|.|+|||||+.+.|..
T Consensus 42 IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 42 IVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999864
No 489
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=74.80 E-value=1 Score=55.38 Aligned_cols=21 Identities=33% Similarity=0.293 Sum_probs=19.0
Q ss_pred CEEEeCCCCCChHHHHhHHhCC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFGT 22 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfGt 22 (772)
++.|+|+.++||||||+.+ |.
T Consensus 791 i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 791 CVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp EEEEECCTTSSHHHHHHHH-HH
T ss_pred EEEEECCCCCChHHHHHHH-HH
Confidence 4789999999999999999 74
No 490
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=74.72 E-value=1.3 Score=45.02 Aligned_cols=21 Identities=19% Similarity=-0.002 Sum_probs=18.7
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
||+|.|..+|||||+.+.|..
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999854
No 491
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=74.69 E-value=1.4 Score=47.09 Aligned_cols=27 Identities=22% Similarity=0.001 Sum_probs=23.5
Q ss_pred EEEeCCCCCChHHHHhHHhCCCeeeec
Q 004126 2 CHIFFVIMTGKSTLLNHLFGTNFREMD 28 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfGtkfsims 28 (772)
|.|.|..++|||||.+.|.+.....++
T Consensus 147 vl~~G~sG~GKSt~a~~l~~~g~~lv~ 173 (314)
T 1ko7_A 147 VLITGDSGIGKSETALELIKRGHRLVA 173 (314)
T ss_dssp EEEEESTTSSHHHHHHHHHHTTCEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHhcCCceec
Confidence 679999999999999999987666664
No 492
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=74.06 E-value=23 Score=34.60 Aligned_cols=29 Identities=10% Similarity=-0.025 Sum_probs=21.2
Q ss_pred EEEe-CCCCCChHHHHhHHh-------CCCeeeecCC
Q 004126 2 CHIF-FVIMTGKSTLLNHLF-------GTNFREMDAF 30 (772)
Q Consensus 2 VaIv-G~~ssGKSTLLN~Lf-------Gtkfsims~~ 30 (772)
|+|. ++.|+||||+-=.|- |.++-++|.-
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 43 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDIS 43 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECC
T ss_pred EEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECC
Confidence 4555 567999999976652 7788888753
No 493
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=74.05 E-value=3.3 Score=43.48 Aligned_cols=86 Identities=16% Similarity=0.019 Sum_probs=50.4
Q ss_pred HhhcccEEEEeeccccccccccCCHHHHHHHHHHHHhhcCCCCccEEEEEeCCCCCChhchH--HHHHHHHHHHhhcCCC
Q 004126 80 ALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE--PVLREDIQKIWDSVPK 157 (772)
Q Consensus 80 ALa~sDvliiNl~~~dig~~~~~n~~lLktv~evnl~lf~~~k~~llfVIrd~d~t~~e~l~--~~l~~~l~~iw~~i~k 157 (772)
.++.+|++++.+...+. . .+...+..... .+. ....|.++|+||+|+.+.+.+. +.+.+....+--.+..
T Consensus 76 ~~~naD~vliV~d~~~p---~-~s~~~l~~~l~-~~~---~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~ 147 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMP---E-FNNYLLDNMLV-VYE---YFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLK 147 (302)
T ss_dssp EEESCCEEEEEECSTTT---T-CCHHHHHHHHH-HHH---HTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhcCEEEEEEECCCC---C-CCHHHHHHHHH-HHH---hCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEE
Confidence 58899999887654332 1 12333322211 011 1568899999999987654211 1122222222114667
Q ss_pred CCCccCCCchhhHHHH
Q 004126 158 PQAHMETPLSEFFNVE 173 (772)
Q Consensus 158 psa~~~~~l~dlf~~~ 173 (772)
.|+.++.+++++|+..
T Consensus 148 ~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 148 VSAKTGEGIDELVDYL 163 (302)
T ss_dssp CCTTTCTTHHHHHHHT
T ss_pred EECCCCCCHHHHHhhc
Confidence 8999999999999875
No 494
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=73.94 E-value=1.4 Score=44.87 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=17.8
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|-|.|+||+|||||..++.+
T Consensus 54 ~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 56899999999999999965
No 495
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=73.83 E-value=0.63 Score=56.17 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=18.8
Q ss_pred CEEEeCCCCCChHHHHhH-HhC
Q 004126 1 MCHIFFVIMTGKSTLLNH-LFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~-LfG 21 (772)
+|+|+|+.+||||||++. |+|
T Consensus 525 iv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 525 MTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp EEEEECCTTSSHHHHCCCCCHH
T ss_pred EEEEEcCCCcCHHHHHHHHHHH
Confidence 589999999999999997 765
No 496
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=73.24 E-value=1.5 Score=45.82 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=18.3
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|-|.|+||+|||||.++|.+
T Consensus 52 vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 56899999999999999986
No 497
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=73.17 E-value=1.4 Score=42.87 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=15.8
Q ss_pred EEEeCCCCCChHHHHhHHh
Q 004126 2 CHIFFVIMTGKSTLLNHLF 20 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~Lf 20 (772)
+.|.|++++||||+|-.+.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999985554
No 498
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=73.00 E-value=1.4 Score=53.66 Aligned_cols=19 Identities=32% Similarity=0.191 Sum_probs=17.8
Q ss_pred CEEEeCCCCCChHHHHhHH
Q 004126 1 MCHIFFVIMTGKSTLLNHL 19 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~L 19 (772)
++.|+|+.++||||||+.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999999
No 499
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=72.87 E-value=7.1 Score=41.16 Aligned_cols=20 Identities=30% Similarity=0.127 Sum_probs=17.9
Q ss_pred EEEeCCCCCChHHHHhHHhC
Q 004126 2 CHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 2 VaIvG~~ssGKSTLLN~LfG 21 (772)
|-+.|+||+|||||..++.+
T Consensus 48 iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 48 ILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp EEEESSSSSCHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 56889999999999999876
No 500
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=72.68 E-value=1.3 Score=47.89 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.1
Q ss_pred CEEEeCCCCCChHHHHhHHhC
Q 004126 1 MCHIFFVIMTGKSTLLNHLFG 21 (772)
Q Consensus 1 ~VaIvG~~ssGKSTLLN~LfG 21 (772)
++.|.|+|++|||||+.++..
T Consensus 63 iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999888874
Done!