BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004127
(772 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 116/273 (42%), Gaps = 56/273 (20%)
Query: 39 MQYLY------VRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSNPEWNQ 89
++YLY VR+++A DLP KD G DPYV++ L K TK K NP +N+
Sbjct: 14 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 73
Query: 90 CFAFS---KDRIQASXXXXXXXXXXXXXXXXIGRVMFD-LNEVPKRIPPDSPLAPQWYRL 145
F FS + Q IG+V+ D L E+ ++ PPD PL W +
Sbjct: 74 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDI 129
Query: 146 EDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVR 205
+ +K GEL ++ YL P +
Sbjct: 130 LEGGSEKADLGELNFSL--------------------------------CYL-PTAGLLT 156
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPS----KTINPMWNEDLMF-VAAE 260
V II+A +L D + F + +VKA L ++ R + + T+NP +NE L+F VA E
Sbjct: 157 VTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 216
Query: 261 PFEE-PLILTVEDRVAPNKDEVLGKCLIPLQAV 292
E L + V D +EV+G C + +A
Sbjct: 217 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 249
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 101/237 (42%), Gaps = 48/237 (20%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSKTINPMWNEDLMFVA--AE 260
V I++A DL D + F + +VK L + +T++ KT+NP++NE F AE
Sbjct: 25 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVH-RKTLNPIFNETFQFSVPLAE 83
Query: 261 PFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKE 320
+ L +V D ++ +++G+ + L + + P W + I++G ++
Sbjct: 84 LAQRKLHFSVYDFDRFSRHDLIGQVV--LDNLLELAEQPPDRPLWRD-----ILEGGSEK 136
Query: 321 TKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKT 380
++ +C + P+ G+L + ++ A L M
Sbjct: 137 ADL-GELNFSLC-------------------------YLPTAGLLTVTIIKASNLKAM-- 168
Query: 381 KDGRGTTDAYCVAKY---GQKWVRTRTIV--DSFGPRWNEQYTWEVFDPCTVITVGV 432
D G +D Y A G++ + +T + ++ P +NE ++V P +V VG+
Sbjct: 169 -DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV-APESVENVGL 223
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 116/273 (42%), Gaps = 56/273 (20%)
Query: 39 MQYLY------VRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSNPEWNQ 89
++YLY VR+++A DLP KD G DPYV++ L K TK K NP +N+
Sbjct: 13 LRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72
Query: 90 CFAFS---KDRIQASXXXXXXXXXXXXXXXXIGRVMFD-LNEVPKRIPPDSPLAPQWYRL 145
F FS + Q IG+V+ D L E+ ++ PPD PL W +
Sbjct: 73 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ-PPDRPL---WRDI 128
Query: 146 EDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVR 205
+ +K GEL ++ YL P +
Sbjct: 129 LEGGSEKADLGELNFSL--------------------------------CYL-PTAGLLT 155
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPS----KTINPMWNEDLMF-VAAE 260
V II+A +L D + F + +VKA L ++ R + + T+NP +NE L+F VA E
Sbjct: 156 VTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 215
Query: 261 PFEE-PLILTVEDRVAPNKDEVLGKCLIPLQAV 292
E L + V D +EV+G C + +A
Sbjct: 216 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 248
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 101/237 (42%), Gaps = 48/237 (20%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSKTINPMWNEDLMFVA--AE 260
V I++A DL D + F + +VK L + +T++ KT+NP++NE F AE
Sbjct: 24 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVH-RKTLNPIFNETFQFSVPLAE 82
Query: 261 PFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKE 320
+ L +V D ++ +++G+ + L + + P W + I++G ++
Sbjct: 83 LAQRKLHFSVYDFDRFSRHDLIGQVV--LDNLLELAEQPPDRPLWRD-----ILEGGSEK 135
Query: 321 TKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKT 380
++ +C + P+ G+L + ++ A L M
Sbjct: 136 ADL-GELNFSLC-------------------------YLPTAGLLTVTIIKASNLKAM-- 167
Query: 381 KDGRGTTDAYCVAKY---GQKWVRTRTIV--DSFGPRWNEQYTWEVFDPCTVITVGV 432
D G +D Y A G++ + +T + ++ P +NE ++V P +V VG+
Sbjct: 168 -DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV-APESVENVGL 222
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 36 VEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAF 93
V+ + L V+V+KA DL D +G DP+ ++LGN + T K NPEWN+ F F
Sbjct: 9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 66
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEV 421
+GIL++ VL A L D G +D +C+ + G ++T T+ + P WN+ +T+ +
Sbjct: 12 VGILQVKVLKAADLL---AADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 422 FDPCTVITVGVFD 434
D V+ V VFD
Sbjct: 69 KDIHDVLEVTVFD 81
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFE 263
++V +++A DLL +D S + F LGN +T + K +NP WN+ F +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTH-TVYKNLNPEWNKVFTF-PIKDIH 72
Query: 264 EPLILTVEDRVAPNKDEVLGKCLIPLQAVQ 293
+ L +TV D + LGK IPL +++
Sbjct: 73 DVLEVTVFDEDGDKPPDFLGKVAIPLLSIR 102
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of
Synaptotagmin Vii
Length = 141
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSN 84
+ S Y+ E L V+++KA++LP KD +G+ DP+V++ L +K TK K N
Sbjct: 16 QFSVGYNFQEST--LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLN 73
Query: 85 PEWNQCFAF 93
P WN+ F F
Sbjct: 74 PHWNETFLF 82
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
V I++AQ+L D S + FVK L T++ K +NP WNE +F P+
Sbjct: 30 VKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVK-RKNLNPHWNETFLF-EGFPY 87
Query: 263 EEP----LILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
E+ L L V D ++++ +G+ IPL V D + T W +L+
Sbjct: 88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV----DLTQMQTFWKDLK 134
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAF----SKDR 97
+ + VV A+ L KD TGS DPYV V++G K TK NP W + F F S DR
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 98 IQ 99
I+
Sbjct: 79 IK 80
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 358 WKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQY 417
W I I V+ A GL + KD G++D Y + G+ RT+TI + P W E +
Sbjct: 15 WSAKISIT---VVCAQGL---QAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENF 68
Query: 418 TWEVFDPCTVITVGVFD 434
+E + I V V D
Sbjct: 69 HFECHNSSDRIKVRVLD 85
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 60/138 (43%), Gaps = 21/138 (15%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMF------- 256
+ + ++ AQ L DK+ + +V +G RT+ + +NP+W E+ F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTK-TIYGNLNPVWEENFHFECHNSSD 77
Query: 257 ---VAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVI 313
V ++ + V+ R D+ LG+ +I ++ + +D W+NL+K
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMD------VWYNLDKRT- 130
Query: 314 VDGEKKETKFSSRIHLRI 331
+K + R+H+ +
Sbjct: 131 ---DKSAVSGAIRLHISV 145
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFEEP 265
V++IEA +L + + + +G+Q+ TR + T+NP WN + F + +++
Sbjct: 391 VHVIEATELKACKPNGKSNPYCEISMGSQSYTTR-TIQDTLNPKWNFNCQFFIKDLYQDV 449
Query: 266 LILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGE 317
L LT+ DR + D+ LG+ IP+ ++ + K TR L H + GE
Sbjct: 450 LCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLL--HEVPTGE 499
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWN-QCFAFSKDRIQ 99
L V V++A +L G +PY E+ +G+ TT+ + NP+WN C F KD Q
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQ 447
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWN 414
IG L + V+ A T +K G ++ YC G + TRTI D+ P+WN
Sbjct: 386 IGRLMVHVIEA---TELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWN 435
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 19/85 (22%)
Query: 24 ITGD-KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL------------- 69
ITG+ +L YDL L + +++A++L +D G DP+V+V L
Sbjct: 5 ITGEIQLQINYDLGN----LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNA 60
Query: 70 -GNYKGTTKHFEKKSNPEWNQCFAF 93
YK TK+ +K NPEWNQ +
Sbjct: 61 SAEYKRRTKYVQKSLNPEWNQTVIY 85
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 20/122 (16%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL-------------GNQASRTRISPSKTINPMWNE 252
++I++A++L+P D + + + FVK L + R K++NP WN+
Sbjct: 22 IHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81
Query: 253 DLMFVA---AEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
+++ + + ++ L +TV D + ++ LG+ LI L + LD+ P RW+ L+
Sbjct: 82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTS-HLDNTP---RWYPLK 137
Query: 310 KH 311
+
Sbjct: 138 EQ 139
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 103/290 (35%), Gaps = 51/290 (17%)
Query: 22 GSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKH 78
GS KL + D Q L V +++A +LP D+ G+ DPYV+V L K TK
Sbjct: 1 GSEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV 60
Query: 79 FEKKSNPEWNQCFAFSKDRIQASXXXXXXXXXXXXXXXXIGRVMFDLNEVPKRIPPDSPL 138
K NP +N+ F F +VP L
Sbjct: 61 HRKTLNPVFNEQFTF---------------------------------KVPYSELAGKTL 87
Query: 139 APQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWH--SDAATVSGEGVANIRSKVY 196
Y DR GE V M T + W A E + +I +
Sbjct: 88 VMAVYDF-DRFSKHDIIGE--FKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLR 144
Query: 197 LSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQA----SRTRISPSKTINPMWNE 252
P + V I+EA++L D + +VK L + T+NP +NE
Sbjct: 145 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE 204
Query: 253 DLMFVAAEPFEE----PLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDH 298
F PFE+ +++TV D K++ +GK + + L H
Sbjct: 205 SFSFEV--PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRH 252
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 106/267 (39%), Gaps = 65/267 (24%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
V II+A +L D + +VK L + T++ KT+NP++NE F P+
Sbjct: 23 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKV--PY 79
Query: 263 EE----PLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEK 318
E L++ V D +K +++G+ +P+ V D V W +L+ EK
Sbjct: 80 SELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV----DFGHVTEEWRDLQS-----AEK 130
Query: 319 KETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPM 378
+E + IC LR + P+ G L + +L A L M
Sbjct: 131 EEQEKLG----DICF---------------SLR------YVPTAGKLTVVILEAKNLKKM 165
Query: 379 KTKDGRGTTDAYCVAKYGQKW-----VRTRTIVDSFGPRWNEQYTWEV-FDPC----TVI 428
D G +D Y Q +T ++ P +NE +++EV F+ V+
Sbjct: 166 ---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVV 222
Query: 429 TVGVFDNXXXXXXXXXXKDSRIGKVRI 455
TV +D K+ IGKV +
Sbjct: 223 TVLDYDK--------IGKNDAIGKVFV 241
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSN 84
KL + D Q L V +++A +LP D+ G+ DPYV+V L K TK K N
Sbjct: 30 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 89
Query: 85 PEWNQCFAF 93
P +N+ F F
Sbjct: 90 PVFNEQFTF 98
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
V II+A +L D + +VK L + T++ KT+NP++NE F P+
Sbjct: 46 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKV--PY 102
Query: 263 EE----PLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
E L++ V D +K +++G+ +P+ V D V W +L+
Sbjct: 103 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV----DFGHVTEEWRDLQ 149
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSN 84
KL + D Q L V +++A +LP D+ G+ DPYV+V L K TK K N
Sbjct: 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 85 PEWNQCFAF 93
P +N+ F F
Sbjct: 82 PVFNEQFTF 90
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
V II+A +L D + +VK L + T++ KT+NP++NE F P+
Sbjct: 38 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKV--PY 94
Query: 263 EE----PLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
E L++ V D +K +++G+ +P+ V D V W +L+
Sbjct: 95 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV----DFGHVTEEWRDLQ 141
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSN 84
KL + D Q L V +++A +LP D+ G+ DPYV+V L K TK K N
Sbjct: 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 85 PEWNQCFAF 93
P +N+ F F
Sbjct: 82 PVFNEQFTF 90
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
V II+A +L D + +VK L + T++ KT+NP++NE F P+
Sbjct: 38 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKV--PY 94
Query: 263 EE----PLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
E L++ V D +K +++G+ +P+ V D V W +L+
Sbjct: 95 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV----DFGHVTEEWRDLQ 141
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain
Of Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In
The Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In
The Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure:
A C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure:
A C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL---GNYKGTTKHFEKKSN 84
KL + D Q L V +++A +LP D+ G+ DPYV+V L K TK K N
Sbjct: 5 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 64
Query: 85 PEWNQCFAF 93
P +N+ F F
Sbjct: 65 PVFNEQFTF 73
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL---GNQASRTRISPSKTINPMWNEDLMFVAAEPF 262
V II+A +L D + +VK L + T++ KT+NP++NE F P+
Sbjct: 21 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKV--PY 77
Query: 263 EE----PLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309
E L++ V D +K +++G+ +P+ V D V W +L+
Sbjct: 78 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV----DFGHVTEEWRDLQ 124
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 38 QMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGT-------TKHFEKKSNPEWNQC 90
+ + L V+VV DL KD+ G+ DPYV++ L TK +K NP+WN+
Sbjct: 19 ESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEE 78
Query: 91 FAF 93
F F
Sbjct: 79 FYF 81
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 364 ILELGVLSAHGLTPMKTKDGRGTTDAYC-----VAKYGQKW--VRTRTIVDSFGPRWNEQ 416
IL + V+S L KD G +D Y VA ++ V+T+TI + P+WNE+
Sbjct: 22 ILRVKVVSGIDLA---KKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEE 78
Query: 417 YTWEVFDPCTVITVGVFDNXXXXXXXXXXKDSRIGKVRIRLSTLETD 463
+ + V + VFD +D +G+V + LS L T+
Sbjct: 79 FYFRVNPSNHRLLFEVFDE------NRLTRDDFLGQVDVPLSHLPTE 119
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 244 KTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPL 289
KT+NP WNE+ F P L+ V D +D+ LG+ +PL
Sbjct: 69 KTLNPKWNEEFYF-RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPL 113
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQCFAF 93
+ L+V V AK+L D G DPYV++KL K TK NP+WN+ F F
Sbjct: 16 EKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 74
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 192 RSKVYLSPKLW--YVRVNIIEAQDLLPSDKSRFPEVFVKAIL----GNQASRTRISPSKT 245
R ++YL ++ + V + +A++L+P D + + +VK L N++ + + T
Sbjct: 4 RGRIYLKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRST 63
Query: 246 INPMWNEDLMFVAAEPFEEPLILTVE 271
+NP WNE F +P ++ L+VE
Sbjct: 64 LNPQWNESFTF-KLKPSDKDRRLSVE 88
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQYTW 419
L + V A L PM D G +D Y K + +T+TI + P+WNE +T+
Sbjct: 18 LHVTVRDAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 74
Query: 420 EV 421
++
Sbjct: 75 KL 76
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQCFAF 93
+ L+V V AK+L D G DPYV++KL K TK NP+WN+ F F
Sbjct: 17 EKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 75
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 192 RSKVYLSPKLW--YVRVNIIEAQDLLPSDKSRFPEVFVKAIL----GNQASRTRISPSKT 245
R ++YL ++ + V + +A++L+P D + + +VK L N++ + + T
Sbjct: 5 RGRIYLKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRST 64
Query: 246 INPMWNEDLMFVAAEPFEEPLILTVE 271
+NP WNE F +P ++ L+VE
Sbjct: 65 LNPQWNESFTF-KLKPSDKDRRLSVE 89
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQYTW 419
L + V A L PM D G +D Y K + +T+TI + P+WNE +T+
Sbjct: 19 LHVTVRDAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 75
Query: 420 EV 421
++
Sbjct: 76 KL 77
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQCFAF 93
+ L+V V AK+L D G DPYV++KL K TK NP+WN+ F F
Sbjct: 18 EKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 76
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 187 GVANIRSKVYLSPKLW--YVRVNIIEAQDLLPSDKSRFPEVFVKAIL----GNQASRTRI 240
G R ++YL ++ + V + +A++L+P D + + +VK L N++ +
Sbjct: 1 GHTEKRGRIYLKAEVADEKLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTK 60
Query: 241 SPSKTINPMWNEDLMFVAAEPFEEPLILTVE 271
+ T+NP WNE F +P ++ L+VE
Sbjct: 61 TIRSTLNPQWNESFTF-KLKPSDKDRRLSVE 90
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQCFAF 93
+ L V V AK+L D G DPYV++KL K TK + NPEWN+ F F
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 37 EQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKG------TTKHFEKKSNPEWNQC 90
E + + VRV+ L KD+ G+ DPYV V L + TK +K NP+WN+
Sbjct: 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEE 76
Query: 91 FAF 93
F
Sbjct: 77 ILF 79
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAIL-----GNQASRTRISPSKTINPMWNEDLMFVA 258
VRV +I L D + +V+ L G S + K++NP WNE+++F
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF-R 80
Query: 259 AEPFEEPLILTVEDRVAPNKDEVLGKCLIPL 289
P + L+ V D +D+ LG+ +PL
Sbjct: 81 VHPQQHRLLFEVFDENRLTRDDFLGQVDVPL 111
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 364 ILELGVLSAHGLTPMKTKDGRGTTDAYC-VAKYGQ-----KWVRTRTIVDSFGPRWNEQY 417
I+ + V++ GL KD G +D Y V Y V+T+TI S P+WNE+
Sbjct: 21 IVRVRVIAGIGLA---KKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEI 77
Query: 418 TWEVFDPCTVITVGVFDNXXXXXXXXXXKDSRIGKVRIRLSTLET-----DRVYTHSYPL 472
+ V + VFD +D +G+V + L L T +R YT +
Sbjct: 78 LFRVHPQQHRLLFEVFDE------NRLTRDDFLGQVDVPLYPLPTENPRLERPYT--FKD 129
Query: 473 LVLHP 477
VLHP
Sbjct: 130 FVLHP 134
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQCFAF 93
+ L V V AK+L D G DPYV++KL K TK + NPEWN+ F F
Sbjct: 172 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRF 230
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEV-----KLGNYKGTTKHFEKKSNPEWNQCFAFS 94
L V ++ AKDLP ++ +PYV++ + K TK +K P+WNQ F +S
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEV-----KLGNYKGTTKHFEKKSNPEWNQCFAFS 94
L V ++ AKDLP ++ +PYV++ + K TK +K P+WNQ F +S
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 44 VRVVKAKDLPGKDVTGSCDPYVEVKLGNYKG------TTKHFEKKSNPEWNQCFAF 93
V+V+ L KD+ G+ DPYV V L + TK +K NP+WN+ F
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 22/141 (15%)
Query: 364 ILELGVLSAHGLTPMKTKDGRGTTDAYC-VAKYGQ-----KWVRTRTIVDSFGPRWNEQY 417
++ + V++ GL KD G +D Y V Y V+T+TI S P+WNE+
Sbjct: 9 VVRVKVIAGIGLA---KKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEI 65
Query: 418 TWEVFDPCTVITVGVFDNXXXXXXXXXXKDSRIGKVRIRLSTLET-----DRVYTHSYPL 472
+ V I VFD +D +G+V + L L T +R YT +
Sbjct: 66 LFRVLPQRHRILFEVFDE------NRLTRDDFLGQVDVPLYPLPTENPRMERPYT--FKD 117
Query: 473 LVLHPSGVRKMGEVQLAVRFT 493
VLHP + + L ++ T
Sbjct: 118 FVLHPRSHKSRVKGYLRLKMT 138
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAIL-----GNQASRTRISPSKTINPMWNEDLMFVA 258
VRV +I L D + +V+ L G S + K++NP WNE+++F
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 259 AEPFEEPLILTVEDRVAPNKDEVLGKCLIPL 289
P ++ V D +D+ LG+ +PL
Sbjct: 70 L-PQRHRILFEVFDENRLTRDDFLGQVDVPL 99
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of
Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYK---GTTKHFEKKSNPE--WNQCFAF 93
L V V+KA+ LP DV+G DPYV+V L + K K KK P +N+ F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 88
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein
Kinase C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein
Kinase C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein
Kinase C Gamma
Length = 144
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKL-----GNYKGTTKHFEKKSNPEWNQCFAFS 94
++V V +A++L D G DPYV++KL K T+ + NP WN+ F F+
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFN 79
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAIL----GNQASRTRISPSKTINPMWNEDLMF 256
+ V + EA++L+P D + + +VK L N + + T+NP+WNE +F
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVF 78
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 44 VRVVKAKDLPGKDVTGSCDPYVEVKLG---NYKGTTKHFEKKSNPEWNQCFAFSKDRIQA 100
+R K D+ + DPYVE+ + + + T+HF NP WN+ F F D Q
Sbjct: 25 LRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQE 84
Query: 101 S 101
+
Sbjct: 85 N 85
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKG------TTKHFEKKSNPEWNQCFAF 93
+ V ++KA++L D+ G+ DPYV+V L YK T ++ NP +N+ FAF
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLM-YKDKRVEKKKTVTKKRNLNPIFNESFAF 74
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPS----KTINPMWNEDLMF-VAAE 260
VNII+A++L D + +VK L + R + + +NP++NE F + E
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79
Query: 261 PFEEP-LILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDH 298
E +I+TV D+ ++++V+GK + ++ + H
Sbjct: 80 KLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKH 118
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 174 DAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN 233
+++ SD AT G + + ++ II A+ L P D + + +VK L
Sbjct: 5 NSYDSDQATTLGA----LEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLP 60
Query: 234 QASRTRISPSKTI----NPMWNEDLMF--VAAEPFE-EPLILTVEDRVAPNKDEVLGK-- 284
AS++ +KT+ NP+WNE L + + E + + L ++V D +E +G+
Sbjct: 61 GASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 120
Query: 285 -CLIPLQAVQRR 295
L L+A QR+
Sbjct: 121 FSLKKLKANQRK 132
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKL--GNYKGT---TKHFEKKSNPEWNQCFAF 93
L +++AK L D G DPYV++ L G K TK NP WN+ +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 56 DVTGSCDPYVEVKLG---NYKGTTKHFEKKSNPEWNQCFAFSKD 96
D+ + DPYVE+ + + + T+HF NP WN+ F F D
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD 65
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 174 DAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN 233
+++ SD AT G + + ++ II A+ L P D + + +VK L
Sbjct: 3 NSYDSDEATTLGA----LEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLP 58
Query: 234 QASRTRISPSKTI----NPMWNEDLMF--VAAEPFE-EPLILTVEDRVAPNKDEVLGK-- 284
AS++ +KT+ NP+WNE L + + E + + L ++V D +E +G+
Sbjct: 59 GASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 118
Query: 285 -CLIPLQAVQRR 295
L L+A QR+
Sbjct: 119 FSLKKLKANQRK 130
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 21 AGSITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKL--GNYKGT--- 75
A ++ + S YD + L +++AK L D G DPYV++ L G K
Sbjct: 10 ATTLGALEFSLLYD--QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLR 67
Query: 76 TKHFEKKSNPEWNQCFAF 93
TK NP WN+ +
Sbjct: 68 TKTLRNTRNPVWNETLQY 85
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 44 VRVVKAKDLPGKDVTGSCDPYVEVKLG---NYKGTTKHFEKKSNPEWNQCFAFSKDRIQA 100
+R K D+ + DPYVE+ + + + T+HF NP WN+ F F D Q
Sbjct: 25 LRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQE 84
Query: 101 S 101
+
Sbjct: 85 N 85
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 30/150 (20%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL----GNQASRTRISPSKTINPMWNEDLMF--VAA 259
V II L D + + + FVK L G +A KT+NP +NE+ + +
Sbjct: 41 VGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100
Query: 260 EPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKK 319
+ ++ L ++V D ++ +G C + + A RL H W+ K+ K
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKH------WYECLKN-------K 147
Query: 320 ETKFSSRIHLRICLDGGYHVLDESTHYSSD 349
+ K +H L H SSD
Sbjct: 148 DKKIER-----------WHQLQNENHVSSD 166
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 204 VRVNIIEAQDLLPSDKSRF----PEVFVK--AILGNQASR-TRISPSKTINPMWNEDLMF 256
+RV II Q L +K++ P+V V+ + + SR T + + NP W+ + F
Sbjct: 497 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 556
Query: 257 VAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDH 298
P + VED + +K++ +G+ IP ++++ H
Sbjct: 557 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRH 598
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 204 VRVNIIEAQDLLPSDKSRF----PEVFVK--AILGNQASR-TRISPSKTINPMWNEDLMF 256
+RV II Q L +K++ P+V V+ + + SR T + + NP W+ + F
Sbjct: 499 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 558
Query: 257 VAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDH 298
P + VED + +K++ +G+ IP ++++ H
Sbjct: 559 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRH 600
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 30/150 (20%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL----GNQASRTRISPSKTINPMWNEDLMF--VAA 259
V II L D + + + FVK L G +A KT+NP +NE+ + +
Sbjct: 41 VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100
Query: 260 EPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKK 319
+ ++ L ++V D ++ +G C + + A RL H W+ K+ K
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKH------WYECLKN-------K 147
Query: 320 ETKFSSRIHLRICLDGGYHVLDESTHYSSD 349
+ K +H L H SSD
Sbjct: 148 DKKIER-----------WHQLQNENHVSSD 166
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 15/61 (24%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSN--------PEWNQCFAF 93
L V +V AK L D + DPYV++ T + ++KSN PEWN+ F F
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQL-------TCRTQDQKSNVAEGMGTTPEWNETFIF 64
Query: 94 S 94
+
Sbjct: 65 T 65
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 206 VNIIEAQDLLPSDKSRFPEVFVKAIL----GNQASRTRISPSKTINPMWNEDLMF--VAA 259
V II L D + + + FVK L G +A KT+NP +NE+ + +
Sbjct: 19 VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 78
Query: 260 EPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDH 298
+ ++ L ++V D ++ +G C + + A RL H
Sbjct: 79 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKH 117
>pdb|2WPN|A Chain A, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase
From D. Vulgaris Hildenborough
Length = 317
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 20/145 (13%)
Query: 268 LTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRI 327
+T+ + V P+ +VL K + L+ P W +H I K KF +
Sbjct: 57 VTLLNSVHPSIADVLLKVI--------SLEFHPTVMAWEG--EHAIEHMRKVAEKFKGKF 106
Query: 328 HLRIC------LDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTK 381
L I DG Y ++ E+ H+ + K+ + +L +G +A+G P
Sbjct: 107 FLVIEGSVPVEADGKYCIIGEANHHEISMVDALKEFGPNAAAVLAVGTCAAYGGIPAAEG 166
Query: 382 DGRGTTDAYCVAKY-GQKWVRTRTI 405
G T V+K+ G ++T +
Sbjct: 167 SETGATA---VSKFLGDNGIKTPVV 188
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAIL-GNQASRTRISPSKTINPMWNE 252
+R+ ++ A++L+ D R P+ F K ++ G+ + + T++P WN+
Sbjct: 5 LRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQ 54
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 20/155 (12%)
Query: 171 AFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAI 230
A DA+H A +GEG A L +V+ I A + +K +
Sbjct: 262 ATGDAYHITAPAPNGEGAARAXKXAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTV 321
Query: 231 LGNQASRTRISPSK-----TINPMWNEDLMFVAAEPFEEPLILTVEDR-VAP-----NKD 279
G A + IS +K T+ + +F +LT+ D +AP N+D
Sbjct: 322 FGEHAKKLAISSTKSXTGHTLGASGGIEAIFA---------LLTIRDNIIAPTIHLKNQD 372
Query: 280 EVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIV 314
EV +P +A + ++ N+ F +V
Sbjct: 373 EVCDLDYVPNEAREANVNVVISNSFGFGGHNATLV 407
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKS-----NPEWNQCFAFS 94
L V +++AK+L DV G DPYV++ L K + NP +N+ F+F
Sbjct: 19 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 76
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKS-----NPEWNQCFAFS 94
L V +++AK+L DV G DPYV++ L K + NP +N+ F+F
Sbjct: 20 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 77
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 204 VRVNIIEAQDLLPSDKSRFPEVFVKAIL-GNQASRTRISPSKTINPMWNE 252
+R+ ++ A++L D R P+ F K ++ G+ + + T++P WN+
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQ 56
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination
Site In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination
Sites In Synaptotagmin I C2b Domain
Length = 159
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKS-----NPEWNQCFAF 93
L V +++AK+L DV G DPYV++ L K + NP +N+ F+F
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,309,270
Number of Sequences: 62578
Number of extensions: 903396
Number of successful extensions: 2147
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2057
Number of HSP's gapped (non-prelim): 98
length of query: 772
length of database: 14,973,337
effective HSP length: 106
effective length of query: 666
effective length of database: 8,340,069
effective search space: 5554485954
effective search space used: 5554485954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)