Query 004127
Match_columns 772
No_of_seqs 463 out of 3337
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 18:01:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08372 PRT_C: Plant phosphor 100.0 1.5E-40 3.3E-45 300.5 15.2 156 617-772 1-156 (156)
2 COG5038 Ca2+-dependent lipid-b 100.0 1.1E-26 2.4E-31 261.7 34.9 400 35-496 431-843 (1227)
3 KOG1028 Ca2+-dependent phospho 100.0 1.2E-27 2.5E-32 259.1 24.1 227 23-291 152-393 (421)
4 KOG1028 Ca2+-dependent phospho 99.9 2.6E-25 5.6E-30 240.9 22.7 230 199-474 164-406 (421)
5 COG5038 Ca2+-dependent lipid-b 99.9 4.1E-23 8.9E-28 233.0 31.8 413 29-493 700-1161(1227)
6 cd04019 C2C_MCTP_PRT_plant C2 99.9 8.2E-22 1.8E-26 183.8 16.3 150 203-352 1-150 (150)
7 cd08379 C2D_MCTP_PRT_plant C2 99.9 1.2E-21 2.5E-26 176.0 14.5 122 364-488 1-125 (126)
8 cd04016 C2_Tollip C2 domain pr 99.9 1.5E-21 3.2E-26 174.2 14.7 118 363-492 2-121 (121)
9 KOG2059 Ras GTPase-activating 99.9 1.2E-21 2.7E-26 209.6 16.5 247 203-494 6-277 (800)
10 KOG2059 Ras GTPase-activating 99.9 2.3E-21 5E-26 207.6 16.8 248 41-334 6-276 (800)
11 cd04016 C2_Tollip C2 domain pr 99.8 2.1E-20 4.6E-25 166.7 15.3 117 40-164 2-121 (121)
12 cd08378 C2B_MCTP_PRT_plant C2 99.8 3.4E-20 7.3E-25 167.1 14.3 120 41-165 1-120 (121)
13 cd08682 C2_Rab11-FIP_classI C2 99.8 2.6E-20 5.7E-25 169.9 13.3 118 365-491 1-126 (126)
14 cd04042 C2A_MCTP_PRT C2 domain 99.8 8.7E-20 1.9E-24 165.3 14.8 120 364-494 1-121 (121)
15 KOG1030 Predicted Ca2+-depende 99.8 4E-20 8.6E-25 167.3 10.3 116 361-489 4-119 (168)
16 cd08682 C2_Rab11-FIP_classI C2 99.8 1.8E-19 3.9E-24 164.4 14.4 117 42-162 1-125 (126)
17 cd04015 C2_plant_PLD C2 domain 99.8 2.9E-19 6.4E-24 168.5 15.1 124 363-493 7-158 (158)
18 cd04019 C2C_MCTP_PRT_plant C2 99.8 5.5E-19 1.2E-23 164.8 15.4 124 41-166 1-133 (150)
19 cd08381 C2B_PI3K_class_II C2 d 99.8 3.8E-19 8.1E-24 160.5 12.6 111 25-145 2-121 (122)
20 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 9.4E-19 2E-23 157.7 14.6 119 365-492 2-121 (121)
21 cd08375 C2_Intersectin C2 doma 99.8 1.3E-18 2.8E-23 159.8 15.3 124 36-164 11-135 (136)
22 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.5E-18 3.4E-23 157.1 15.0 118 41-165 1-120 (121)
23 cd08681 C2_fungal_Inn1p-like C 99.8 1.2E-18 2.7E-23 157.1 13.5 117 40-164 1-118 (118)
24 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.5E-18 3.3E-23 155.9 13.5 113 41-160 1-125 (126)
25 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.9E-18 6.4E-23 155.9 15.6 119 363-494 4-124 (126)
26 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.2E-18 4.7E-23 157.5 14.7 120 41-165 1-126 (127)
27 cd08681 C2_fungal_Inn1p-like C 99.8 1.1E-18 2.3E-23 157.5 12.4 116 363-492 1-118 (118)
28 cd08375 C2_Intersectin C2 doma 99.8 2.7E-18 5.8E-23 157.8 15.2 119 359-492 11-135 (136)
29 KOG1030 Predicted Ca2+-depende 99.8 7.2E-19 1.6E-23 159.1 10.9 94 37-131 3-97 (168)
30 cd08376 C2B_MCTP_PRT C2 domain 99.8 2.9E-18 6.4E-23 154.1 14.5 114 364-493 1-115 (116)
31 cd08677 C2A_Synaptotagmin-13 C 99.8 1.6E-18 3.5E-23 151.7 12.0 110 26-145 2-118 (118)
32 cd08377 C2C_MCTP_PRT C2 domain 99.8 4E-18 8.6E-23 154.1 14.9 118 363-492 1-118 (119)
33 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.8E-18 6.1E-23 156.7 13.9 121 364-493 1-126 (127)
34 cd08392 C2A_SLP-3 C2 domain fi 99.8 2.7E-18 5.8E-23 155.9 13.1 117 25-145 2-127 (128)
35 cd04028 C2B_RIM1alpha C2 domai 99.8 3.2E-18 6.9E-23 157.4 13.5 116 24-149 17-140 (146)
36 cd08376 C2B_MCTP_PRT C2 domain 99.8 6E-18 1.3E-22 152.1 15.0 113 41-164 1-114 (116)
37 cd08678 C2_C21orf25-like C2 do 99.8 5E-18 1.1E-22 154.8 14.5 120 365-495 1-122 (126)
38 cd08393 C2A_SLP-1_2 C2 domain 99.8 2.7E-18 5.9E-23 155.9 12.6 115 25-146 2-125 (125)
39 PF04842 DUF639: Plant protein 99.8 3.9E-18 8.6E-23 185.5 14.8 186 561-766 480-673 (683)
40 cd04024 C2A_Synaptotagmin-like 99.8 8.6E-18 1.9E-22 154.1 14.9 122 40-164 1-128 (128)
41 cd08381 C2B_PI3K_class_II C2 d 99.8 6.1E-18 1.3E-22 152.6 13.4 100 363-472 13-121 (122)
42 cd08394 C2A_Munc13 C2 domain f 99.8 6.8E-18 1.5E-22 149.1 13.0 102 39-148 1-102 (127)
43 cd04024 C2A_Synaptotagmin-like 99.8 1.1E-17 2.3E-22 153.5 14.0 120 363-491 1-127 (128)
44 cd08677 C2A_Synaptotagmin-13 C 99.8 9.8E-18 2.1E-22 146.8 12.8 102 359-472 10-118 (118)
45 KOG1326 Membrane-associated pr 99.8 2.3E-18 5.1E-23 191.1 11.0 406 28-459 195-703 (1105)
46 cd04029 C2A_SLP-4_5 C2 domain 99.8 1E-17 2.2E-22 151.9 13.3 115 25-146 2-125 (125)
47 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 1E-17 2.2E-22 152.2 13.1 119 364-491 1-123 (123)
48 cd04028 C2B_RIM1alpha C2 domai 99.8 1.7E-17 3.8E-22 152.5 14.6 105 363-475 29-139 (146)
49 cd04046 C2_Calpain C2 domain p 99.7 3.6E-17 7.9E-22 148.9 16.3 119 363-493 3-122 (126)
50 cd04050 C2B_Synaptotagmin-like 99.7 9.7E-18 2.1E-22 147.5 11.9 103 41-148 1-103 (105)
51 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.9E-17 4.1E-22 150.1 13.8 105 361-473 13-125 (125)
52 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.9E-17 4E-22 152.9 14.0 118 365-492 2-132 (133)
53 cd08377 C2C_MCTP_PRT C2 domain 99.7 4.2E-17 9.1E-22 147.4 15.9 116 40-164 1-118 (119)
54 cd04017 C2D_Ferlin C2 domain f 99.7 4.3E-17 9.4E-22 150.3 16.2 122 40-166 1-133 (135)
55 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 3.1E-17 6.7E-22 149.1 14.9 116 41-162 1-122 (123)
56 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1.8E-17 4E-22 150.3 13.4 117 363-492 1-121 (121)
57 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.8E-17 4E-22 150.5 13.2 103 362-473 14-125 (125)
58 cd04036 C2_cPLA2 C2 domain pre 99.7 2.7E-17 5.9E-22 148.4 14.2 114 41-164 1-117 (119)
59 cd08391 C2A_C2C_Synaptotagmin_ 99.7 3E-17 6.4E-22 148.9 14.5 114 40-163 1-120 (121)
60 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 3.4E-17 7.4E-22 151.1 15.1 122 41-164 1-132 (133)
61 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.9E-17 6.2E-22 148.4 14.0 117 365-491 2-120 (121)
62 cd08395 C2C_Munc13 C2 domain t 99.7 1.9E-17 4.2E-22 147.3 12.3 102 41-148 1-113 (120)
63 cd08680 C2_Kibra C2 domain fou 99.7 1.9E-17 4.2E-22 148.8 12.1 114 26-145 2-124 (124)
64 cd08400 C2_Ras_p21A1 C2 domain 99.7 7.6E-17 1.7E-21 146.6 16.1 118 39-166 3-124 (126)
65 cd08385 C2A_Synaptotagmin-1-5- 99.7 2.8E-17 6E-22 149.6 13.2 116 24-146 2-123 (124)
66 cd04011 C2B_Ferlin C2 domain s 99.7 2.9E-17 6.4E-22 146.1 12.8 105 38-148 2-111 (111)
67 cd04036 C2_cPLA2 C2 domain pre 99.7 3.6E-17 7.7E-22 147.6 13.3 112 365-492 2-117 (119)
68 cd08387 C2A_Synaptotagmin-8 C2 99.7 3.8E-17 8.3E-22 148.7 13.5 115 25-146 3-123 (124)
69 cd08388 C2A_Synaptotagmin-4-11 99.7 4.3E-17 9.4E-22 148.5 13.1 118 24-146 2-127 (128)
70 cd04046 C2_Calpain C2 domain p 99.7 1.3E-16 2.9E-21 145.2 15.8 118 39-165 2-122 (126)
71 cd08389 C2A_Synaptotagmin-14_1 99.7 4.2E-17 9.2E-22 147.7 12.5 116 24-147 2-124 (124)
72 cd08387 C2A_Synaptotagmin-8 C2 99.7 6.1E-17 1.3E-21 147.3 13.6 104 361-473 14-123 (124)
73 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.1E-16 2.4E-21 144.2 15.1 115 42-163 2-120 (121)
74 cd04031 C2A_RIM1alpha C2 domai 99.7 5.1E-17 1.1E-21 148.3 12.8 114 25-146 3-125 (125)
75 PF11696 DUF3292: Protein of u 99.7 5.3E-17 1.1E-21 176.6 15.0 214 556-770 83-391 (642)
76 cd04015 C2_plant_PLD C2 domain 99.7 1.3E-16 2.9E-21 150.5 15.8 118 40-164 7-157 (158)
77 cd08678 C2_C21orf25-like C2 do 99.7 1.4E-16 2.9E-21 145.3 15.0 116 42-166 1-121 (126)
78 cd04027 C2B_Munc13 C2 domain s 99.7 1E-16 2.3E-21 146.1 14.2 121 364-490 2-127 (127)
79 cd08395 C2C_Munc13 C2 domain t 99.7 5.6E-17 1.2E-21 144.4 12.0 101 364-474 1-112 (120)
80 cd08685 C2_RGS-like C2 domain 99.7 5.1E-17 1.1E-21 145.7 11.2 111 25-145 1-119 (119)
81 cd04030 C2C_KIAA1228 C2 domain 99.7 1E-16 2.2E-21 146.6 13.4 116 24-146 2-127 (127)
82 cd04010 C2B_RasA3 C2 domain se 99.7 7.8E-17 1.7E-21 149.3 12.6 103 41-149 1-124 (148)
83 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.1E-16 2.4E-21 145.3 13.3 102 362-472 14-127 (128)
84 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.2E-16 2.6E-21 144.0 13.2 118 203-333 1-119 (121)
85 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.3E-16 2.8E-21 145.6 13.6 115 25-146 3-124 (125)
86 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.3E-16 5E-21 142.5 15.1 116 42-163 2-120 (121)
87 cd08685 C2_RGS-like C2 domain 99.7 9.6E-17 2.1E-21 143.9 12.3 101 363-472 12-119 (119)
88 cd04044 C2A_Tricalbin-like C2 99.7 1.1E-16 2.3E-21 146.0 12.9 121 362-494 1-124 (124)
89 cd04027 C2B_Munc13 C2 domain s 99.7 2.6E-16 5.5E-21 143.5 14.8 113 41-162 2-127 (127)
90 cd08688 C2_KIAA0528-like C2 do 99.7 5.8E-17 1.3E-21 143.8 10.1 101 365-474 1-109 (110)
91 cd04039 C2_PSD C2 domain prese 99.7 1.1E-16 2.5E-21 140.6 11.8 96 363-464 1-99 (108)
92 cd08394 C2A_Munc13 C2 domain f 99.7 1.4E-16 2.9E-21 140.9 12.2 99 363-475 2-102 (127)
93 cd08521 C2A_SLP C2 domain firs 99.7 1.6E-16 3.6E-21 144.5 13.0 114 25-145 1-123 (123)
94 cd08385 C2A_Synaptotagmin-1-5- 99.7 2.4E-16 5.2E-21 143.5 14.1 103 362-473 15-123 (124)
95 cd04050 C2B_Synaptotagmin-like 99.7 1.5E-16 3.2E-21 140.0 12.2 98 365-474 2-102 (105)
96 cd08382 C2_Smurf-like C2 domai 99.7 3.6E-16 7.7E-21 141.7 14.8 114 42-162 2-122 (123)
97 cd04010 C2B_RasA3 C2 domain se 99.7 1.1E-16 2.4E-21 148.3 11.6 116 364-490 1-147 (148)
98 cd04039 C2_PSD C2 domain prese 99.7 2E-16 4.3E-21 139.1 12.5 93 40-132 1-99 (108)
99 cd08688 C2_KIAA0528-like C2 do 99.7 1.7E-16 3.6E-21 140.9 12.0 104 42-147 1-109 (110)
100 cd04013 C2_SynGAP_like C2 doma 99.7 4.3E-16 9.4E-21 142.7 15.0 123 363-495 11-141 (146)
101 cd04014 C2_PKC_epsilon C2 doma 99.7 6.1E-16 1.3E-20 142.3 15.9 116 39-166 3-130 (132)
102 cd04030 C2C_KIAA1228 C2 domain 99.7 3.1E-16 6.6E-21 143.5 13.6 105 362-473 15-127 (127)
103 cd08373 C2A_Ferlin C2 domain f 99.7 3.9E-16 8.4E-21 142.6 14.2 115 369-496 2-119 (127)
104 cd08373 C2A_Ferlin C2 domain f 99.7 5.1E-16 1.1E-20 141.8 14.9 114 46-167 2-118 (127)
105 cd04031 C2A_RIM1alpha C2 domai 99.7 3.1E-16 6.8E-21 143.0 13.4 102 362-473 15-125 (125)
106 cd08382 C2_Smurf-like C2 domai 99.7 3.3E-16 7.3E-21 141.9 13.4 118 365-490 2-122 (123)
107 cd04051 C2_SRC2_like C2 domain 99.7 1.9E-16 4.2E-21 144.3 11.9 118 41-160 1-125 (125)
108 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2.3E-16 4.9E-21 149.4 12.6 119 25-148 2-139 (162)
109 cd04014 C2_PKC_epsilon C2 doma 99.7 5.6E-16 1.2E-20 142.6 14.6 117 363-494 4-130 (132)
110 cd08390 C2A_Synaptotagmin-15-1 99.7 4.1E-16 8.8E-21 141.8 13.6 116 25-147 1-123 (123)
111 cd08406 C2B_Synaptotagmin-12 C 99.7 8.5E-17 1.8E-21 147.3 9.0 118 24-150 1-126 (136)
112 cd08388 C2A_Synaptotagmin-4-11 99.7 4.1E-16 8.9E-21 142.0 13.4 103 362-473 15-127 (128)
113 cd04041 C2A_fungal C2 domain f 99.7 1.7E-16 3.7E-21 141.0 10.7 100 40-147 1-108 (111)
114 cd04043 C2_Munc13_fungal C2 do 99.7 9.7E-16 2.1E-20 140.0 15.6 118 41-167 2-123 (126)
115 cd04017 C2D_Ferlin C2 domain f 99.7 8.1E-16 1.7E-20 141.9 15.0 118 364-494 2-133 (135)
116 cd08386 C2A_Synaptotagmin-7 C2 99.7 6.5E-16 1.4E-20 140.9 14.2 103 362-473 15-124 (125)
117 cd08680 C2_Kibra C2 domain fou 99.7 3.1E-16 6.7E-21 140.9 11.3 105 359-472 10-124 (124)
118 cd08521 C2A_SLP C2 domain firs 99.7 6.8E-16 1.5E-20 140.4 13.3 103 361-472 12-123 (123)
119 cd04041 C2A_fungal C2 domain f 99.7 2.9E-16 6.4E-21 139.5 10.3 99 363-473 1-107 (111)
120 cd04044 C2A_Tricalbin-like C2 99.7 9.1E-16 2E-20 139.8 13.8 119 39-165 1-123 (124)
121 cd08407 C2B_Synaptotagmin-13 C 99.7 4.3E-16 9.4E-21 142.4 11.3 101 25-127 2-112 (138)
122 cd04018 C2C_Ferlin C2 domain t 99.7 6E-16 1.3E-20 143.6 11.9 95 364-464 1-108 (151)
123 cd04011 C2B_Ferlin C2 domain s 99.7 6.1E-16 1.3E-20 137.6 11.6 107 199-311 1-111 (111)
124 cd04018 C2C_Ferlin C2 domain t 99.7 9.1E-16 2E-20 142.4 13.0 108 42-149 2-127 (151)
125 cd08676 C2A_Munc13-like C2 dom 99.7 8.1E-16 1.8E-20 142.9 12.5 102 35-145 23-153 (153)
126 cd08389 C2A_Synaptotagmin-14_1 99.7 1.4E-15 3E-20 137.8 13.7 102 362-473 15-123 (124)
127 cd04032 C2_Perforin C2 domain 99.7 1.1E-15 2.4E-20 137.6 12.6 94 36-130 24-119 (127)
128 cd08406 C2B_Synaptotagmin-12 C 99.6 1.6E-15 3.4E-20 138.9 13.3 105 360-475 12-124 (136)
129 cd04032 C2_Perforin C2 domain 99.6 1.1E-15 2.3E-20 137.6 11.8 95 359-463 24-120 (127)
130 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.5E-15 3.3E-20 143.8 13.5 106 360-474 24-138 (162)
131 KOG1326 Membrane-associated pr 99.6 1.1E-14 2.4E-19 162.3 22.0 284 199-492 610-1021(1105)
132 cd04038 C2_ArfGAP C2 domain pr 99.6 1.2E-15 2.7E-20 141.0 12.3 91 39-131 1-92 (145)
133 cd08407 C2B_Synaptotagmin-13 C 99.6 4.9E-16 1.1E-20 142.0 9.4 107 360-475 12-126 (138)
134 cd04049 C2_putative_Elicitor-r 99.6 1.9E-15 4.2E-20 137.5 13.1 104 40-148 1-109 (124)
135 cd04051 C2_SRC2_like C2 domain 99.6 1.1E-15 2.4E-20 139.3 11.4 112 365-488 2-125 (125)
136 PLN03008 Phospholipase D delta 99.6 1.3E-15 2.9E-20 170.8 14.3 107 384-497 74-181 (868)
137 cd04043 C2_Munc13_fungal C2 do 99.6 2.8E-15 6.1E-20 136.9 14.0 113 364-493 2-121 (126)
138 cd04038 C2_ArfGAP C2 domain pr 99.6 1.4E-15 2.9E-20 140.7 11.8 91 363-463 2-92 (145)
139 cd08390 C2A_Synaptotagmin-15-1 99.6 3.2E-15 6.9E-20 135.9 14.1 104 361-473 12-122 (123)
140 cd08404 C2B_Synaptotagmin-4 C2 99.6 6.1E-16 1.3E-20 143.0 9.1 118 25-151 2-127 (136)
141 cd04049 C2_putative_Elicitor-r 99.6 1.9E-15 4.1E-20 137.5 12.1 104 363-475 1-109 (124)
142 cd04009 C2B_Munc13-like C2 dom 99.6 1.7E-15 3.7E-20 139.3 11.8 106 24-131 2-119 (133)
143 cd08408 C2B_Synaptotagmin-14_1 99.6 6.2E-16 1.3E-20 142.4 8.7 119 25-151 2-129 (138)
144 cd08384 C2B_Rabphilin_Doc2 C2 99.6 8.4E-16 1.8E-20 141.7 9.5 116 27-151 2-125 (133)
145 cd04026 C2_PKC_alpha_gamma C2 99.6 2.5E-15 5.4E-20 138.2 12.6 115 25-149 2-123 (131)
146 cd04045 C2C_Tricalbin-like C2 99.6 4.8E-15 1E-19 133.4 13.8 104 40-150 1-106 (120)
147 cd08410 C2B_Synaptotagmin-17 C 99.6 8.4E-16 1.8E-20 141.6 9.1 119 25-151 1-127 (135)
148 cd04021 C2_E3_ubiquitin_ligase 99.6 6.9E-15 1.5E-19 133.5 14.8 118 41-162 3-124 (125)
149 cd08690 C2_Freud-1 C2 domain f 99.6 7.8E-15 1.7E-19 135.9 15.1 117 365-492 4-136 (155)
150 cd04045 C2C_Tricalbin-like C2 99.6 2.7E-15 5.9E-20 135.0 11.6 103 363-475 1-104 (120)
151 cd08405 C2B_Synaptotagmin-7 C2 99.6 1.1E-15 2.4E-20 141.4 8.9 118 24-150 1-126 (136)
152 cd08409 C2B_Synaptotagmin-15 C 99.6 3.4E-15 7.4E-20 137.7 11.6 117 24-148 1-125 (137)
153 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.4E-15 3E-20 140.8 8.9 117 25-150 2-126 (136)
154 cd04040 C2D_Tricalbin-like C2 99.6 6.8E-15 1.5E-19 132.0 12.9 111 42-159 1-113 (115)
155 cd08404 C2B_Synaptotagmin-4 C2 99.6 2.9E-15 6.3E-20 138.5 10.6 103 362-475 14-124 (136)
156 cd04026 C2_PKC_alpha_gamma C2 99.6 5.9E-15 1.3E-19 135.7 12.3 103 363-475 13-122 (131)
157 cd08691 C2_NEDL1-like C2 domai 99.6 1.8E-14 4E-19 131.6 15.1 116 41-162 2-136 (137)
158 cd08675 C2B_RasGAP C2 domain s 99.6 5.2E-15 1.1E-19 136.3 11.5 102 42-149 1-122 (137)
159 cd04040 C2D_Tricalbin-like C2 99.6 9.4E-15 2E-19 131.1 12.6 111 365-487 1-113 (115)
160 cd08403 C2B_Synaptotagmin-3-5- 99.6 6.7E-15 1.5E-19 135.8 11.8 118 25-151 1-126 (134)
161 cd08690 C2_Freud-1 C2 domain f 99.6 2.3E-14 5.1E-19 132.8 14.9 118 42-166 4-138 (155)
162 cd08402 C2B_Synaptotagmin-1 C2 99.6 1.1E-14 2.3E-19 134.8 12.7 106 359-475 11-124 (136)
163 cd04009 C2B_Munc13-like C2 dom 99.6 1E-14 2.2E-19 134.2 12.4 92 362-462 15-118 (133)
164 cd08410 C2B_Synaptotagmin-17 C 99.6 1.8E-14 4E-19 132.7 14.1 106 360-475 11-124 (135)
165 cd00276 C2B_Synaptotagmin C2 d 99.6 3.3E-15 7.2E-20 138.1 8.8 118 25-151 1-126 (134)
166 cd04037 C2E_Ferlin C2 domain f 99.6 8.5E-15 1.8E-19 132.7 10.9 90 41-130 1-93 (124)
167 cd04021 C2_E3_ubiquitin_ligase 99.6 2.2E-14 4.9E-19 130.2 13.5 116 364-490 3-124 (125)
168 cd08383 C2A_RasGAP C2 domain ( 99.6 2.8E-14 6E-19 128.5 13.6 112 365-492 2-117 (117)
169 cd08405 C2B_Synaptotagmin-7 C2 99.6 7.2E-15 1.6E-19 135.9 9.9 104 361-475 13-124 (136)
170 cd08691 C2_NEDL1-like C2 domai 99.6 3.3E-14 7.1E-19 130.0 14.0 118 364-490 2-136 (137)
171 cd08384 C2B_Rabphilin_Doc2 C2 99.6 4.5E-15 9.9E-20 136.8 8.1 105 360-475 10-122 (133)
172 cd04035 C2A_Rabphilin_Doc2 C2 99.6 3.1E-14 6.6E-19 129.3 13.3 106 24-131 1-114 (123)
173 cd08408 C2B_Synaptotagmin-14_1 99.6 3.2E-14 7E-19 131.0 13.5 105 360-474 12-125 (138)
174 cd08692 C2B_Tac2-N C2 domain s 99.6 1.8E-14 3.9E-19 129.5 11.5 100 27-128 3-110 (135)
175 cd08409 C2B_Synaptotagmin-15 C 99.6 1.1E-14 2.3E-19 134.5 10.1 105 361-475 13-125 (137)
176 cd08403 C2B_Synaptotagmin-3-5- 99.6 4.2E-14 9.2E-19 130.4 14.1 105 360-475 11-123 (134)
177 cd08383 C2A_RasGAP C2 domain ( 99.6 4.1E-14 8.8E-19 127.4 13.6 111 42-164 2-117 (117)
178 cd08692 C2B_Tac2-N C2 domain s 99.6 3.1E-14 6.6E-19 128.0 12.4 93 199-292 11-110 (135)
179 cd04052 C2B_Tricalbin-like C2 99.6 1.7E-14 3.7E-19 128.1 10.5 99 383-494 9-110 (111)
180 cd04052 C2B_Tricalbin-like C2 99.6 2.9E-14 6.2E-19 126.7 11.5 101 57-166 9-110 (111)
181 cd08676 C2A_Munc13-like C2 dom 99.6 2.7E-14 5.9E-19 132.7 11.7 102 197-308 23-153 (153)
182 cd00275 C2_PLC_like C2 domain 99.6 9.2E-14 2E-18 127.3 14.8 116 40-164 2-127 (128)
183 cd00276 C2B_Synaptotagmin C2 d 99.5 1.1E-14 2.4E-19 134.6 8.7 103 362-475 13-123 (134)
184 KOG0696 Serine/threonine prote 99.5 3.7E-15 8.1E-20 151.6 5.6 103 363-475 180-289 (683)
185 cd08675 C2B_RasGAP C2 domain s 99.5 3.4E-14 7.4E-19 130.9 11.5 103 204-312 1-122 (137)
186 KOG0696 Serine/threonine prote 99.5 3.4E-15 7.3E-20 151.9 4.9 104 40-149 180-290 (683)
187 KOG1013 Synaptic vesicle prote 99.5 3.6E-15 7.7E-20 147.6 3.9 228 24-291 79-328 (362)
188 cd04013 C2_SynGAP_like C2 doma 99.5 1.8E-13 3.9E-18 125.5 14.7 116 40-166 11-140 (146)
189 cd04048 C2A_Copine C2 domain f 99.5 5E-14 1.1E-18 127.2 10.5 98 368-474 5-114 (120)
190 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1.7E-13 3.7E-18 124.4 13.9 97 363-469 15-120 (123)
191 PLN03200 cellulose synthase-in 99.5 3.1E-14 6.8E-19 174.7 11.1 118 360-493 1977-2100(2102)
192 cd04037 C2E_Ferlin C2 domain f 99.5 7.3E-14 1.6E-18 126.6 10.5 89 204-293 2-92 (124)
193 cd08686 C2_ABR C2 domain in th 99.5 2.4E-13 5.3E-18 118.6 12.4 85 365-458 1-91 (118)
194 cd04048 C2A_Copine C2 domain f 99.5 1.5E-13 3.2E-18 124.2 11.5 97 46-147 6-114 (120)
195 cd00275 C2_PLC_like C2 domain 99.5 4.5E-13 9.7E-18 122.8 14.4 117 364-492 3-127 (128)
196 PLN03008 Phospholipase D delta 99.5 2.9E-13 6.2E-18 152.3 14.1 124 40-169 14-181 (868)
197 cd08686 C2_ABR C2 domain in th 99.5 2.4E-13 5.2E-18 118.7 10.5 78 42-126 1-91 (118)
198 PF06398 Pex24p: Integral pero 99.5 8.8E-13 1.9E-17 142.8 15.1 179 559-751 1-194 (359)
199 PLN03200 cellulose synthase-in 99.4 2.2E-13 4.8E-18 167.4 11.3 120 36-165 1976-2100(2102)
200 cd04047 C2B_Copine C2 domain s 99.4 4.7E-13 1E-17 118.9 10.0 87 368-464 5-102 (110)
201 KOG1327 Copine [Signal transdu 99.4 3.4E-12 7.4E-17 136.9 15.3 241 234-525 41-320 (529)
202 cd04047 C2B_Copine C2 domain s 99.4 1.6E-12 3.5E-17 115.5 11.0 86 45-131 5-101 (110)
203 PF00168 C2: C2 domain; Inter 99.4 1.9E-12 4.1E-17 109.0 9.5 81 42-122 1-85 (85)
204 KOG1013 Synaptic vesicle prote 99.4 2.8E-13 6.1E-18 134.3 5.0 222 201-460 92-329 (362)
205 KOG1011 Neurotransmitter relea 99.4 1E-12 2.2E-17 139.4 8.2 121 41-170 296-429 (1283)
206 KOG1011 Neurotransmitter relea 99.3 1.2E-12 2.6E-17 138.8 6.5 124 363-492 295-423 (1283)
207 PLN02270 phospholipase D alpha 99.3 2.5E-11 5.5E-16 136.9 13.8 128 363-497 8-152 (808)
208 PF00168 C2: C2 domain; Inter 99.3 1.7E-11 3.8E-16 103.1 9.4 82 204-286 1-85 (85)
209 cd00030 C2 C2 domain. The C2 d 99.2 2.4E-10 5.2E-15 99.0 11.3 99 42-145 1-102 (102)
210 cd00030 C2 C2 domain. The C2 d 99.2 2E-10 4.4E-15 99.5 10.2 99 365-472 1-102 (102)
211 smart00239 C2 Protein kinase C 99.1 3.5E-10 7.6E-15 98.2 11.4 90 42-131 2-95 (101)
212 smart00239 C2 Protein kinase C 99.1 3.7E-10 8E-15 98.1 10.5 91 365-464 2-96 (101)
213 PLN02223 phosphoinositide phos 99.1 5.9E-10 1.3E-14 121.2 14.0 117 40-164 409-536 (537)
214 cd08374 C2F_Ferlin C2 domain s 99.1 4.9E-10 1.1E-14 100.9 10.4 93 365-464 2-125 (133)
215 cd08374 C2F_Ferlin C2 domain s 99.1 8.4E-10 1.8E-14 99.4 10.6 90 42-131 2-124 (133)
216 PLN02270 phospholipase D alpha 99.0 1.8E-09 3.8E-14 122.3 14.0 123 40-168 8-151 (808)
217 PLN02952 phosphoinositide phos 99.0 3E-09 6.5E-14 118.4 14.1 117 40-164 470-598 (599)
218 cd08689 C2_fungal_Pkc1p C2 dom 99.0 1.7E-09 3.7E-14 90.9 8.1 84 42-130 1-88 (109)
219 PLN02223 phosphoinositide phos 99.0 7.3E-09 1.6E-13 112.8 14.3 104 363-475 409-520 (537)
220 PLN02952 phosphoinositide phos 98.9 1E-08 2.3E-13 114.2 14.6 120 362-493 469-597 (599)
221 PLN02230 phosphoinositide phos 98.9 6.3E-09 1.4E-13 115.7 12.5 117 40-164 469-597 (598)
222 cd08689 C2_fungal_Pkc1p C2 dom 98.9 5.3E-09 1.1E-13 87.9 8.2 86 365-461 1-87 (109)
223 PLN02222 phosphoinositide phos 98.9 1.4E-08 3.1E-13 112.7 13.8 117 40-164 452-580 (581)
224 PLN02228 Phosphoinositide phos 98.9 1.9E-08 4.1E-13 111.4 13.6 118 40-165 431-561 (567)
225 KOG1031 Predicted Ca2+-depende 98.9 1E-08 2.2E-13 108.3 10.7 120 363-493 3-136 (1169)
226 KOG0169 Phosphoinositide-speci 98.8 2.4E-08 5.2E-13 110.8 12.2 121 37-165 613-744 (746)
227 KOG1328 Synaptic vesicle prote 98.8 1.5E-09 3.2E-14 117.5 2.3 128 35-169 109-305 (1103)
228 KOG1327 Copine [Signal transdu 98.8 5.9E-08 1.3E-12 104.7 14.2 180 73-294 42-236 (529)
229 PLN02230 phosphoinositide phos 98.8 6.4E-08 1.4E-12 107.7 13.6 104 363-475 469-581 (598)
230 PLN02228 Phosphoinositide phos 98.8 8.2E-08 1.8E-12 106.5 14.2 121 363-494 431-562 (567)
231 PLN02222 phosphoinositide phos 98.8 9.3E-08 2E-12 106.3 14.5 104 363-475 452-564 (581)
232 PF08372 PRT_C: Plant phosphor 98.8 7.6E-09 1.6E-13 94.6 4.7 102 521-623 13-120 (156)
233 KOG1031 Predicted Ca2+-depende 98.7 2.5E-08 5.5E-13 105.4 7.7 124 40-165 3-136 (1169)
234 KOG1328 Synaptic vesicle prote 98.7 9.4E-09 2E-13 111.4 3.0 105 24-130 933-1049(1103)
235 KOG0169 Phosphoinositide-speci 98.7 1.5E-07 3.1E-12 104.7 12.2 118 364-492 617-743 (746)
236 PLN02352 phospholipase D epsil 98.6 1.8E-07 3.8E-12 106.2 12.3 120 363-497 10-134 (758)
237 KOG0905 Phosphoinositide 3-kin 98.6 3.4E-08 7.5E-13 112.4 6.6 119 20-147 1507-1635(1639)
238 KOG1264 Phospholipase C [Lipid 98.6 1.4E-07 3E-12 103.8 10.3 100 363-475 1065-1172(1267)
239 KOG1264 Phospholipase C [Lipid 98.6 1.6E-07 3.4E-12 103.3 10.4 117 41-166 1066-1190(1267)
240 PLN02352 phospholipase D epsil 98.4 2.1E-06 4.5E-11 97.7 12.8 118 40-168 10-133 (758)
241 PF12416 DUF3668: Cep120 prote 98.4 0.00024 5.1E-09 74.6 25.7 243 42-294 2-295 (340)
242 cd08683 C2_C2cd3 C2 domain fou 98.3 9.4E-07 2E-11 76.7 4.8 108 365-472 1-143 (143)
243 KOG0905 Phosphoinositide 3-kin 98.2 1.8E-06 3.8E-11 99.0 6.2 104 362-474 1523-1635(1639)
244 PF12416 DUF3668: Cep120 prote 97.9 0.0052 1.1E-07 64.7 25.5 236 204-461 2-294 (340)
245 cd08683 C2_C2cd3 C2 domain fou 97.9 1.3E-05 2.8E-10 69.7 4.1 100 42-145 1-143 (143)
246 cd08684 C2A_Tac2-N C2 domain f 97.7 2.9E-05 6.4E-10 62.5 3.7 88 43-131 2-95 (103)
247 PLN02964 phosphatidylserine de 97.7 6.3E-05 1.4E-09 85.3 6.4 88 361-464 52-141 (644)
248 cd08684 C2A_Tac2-N C2 domain f 97.5 0.00016 3.4E-09 58.4 4.4 95 205-307 2-102 (103)
249 PLN02964 phosphatidylserine de 97.4 0.00017 3.7E-09 81.9 6.0 91 34-131 48-140 (644)
250 KOG2060 Rab3 effector RIM1 and 97.3 0.00067 1.5E-08 69.8 7.4 107 361-475 267-380 (405)
251 KOG2060 Rab3 effector RIM1 and 97.2 0.00023 5E-09 73.1 3.3 111 34-149 263-381 (405)
252 KOG3837 Uncharacterized conser 97.2 0.00025 5.5E-09 73.3 3.6 118 41-165 368-503 (523)
253 KOG3837 Uncharacterized conser 97.0 0.00059 1.3E-08 70.7 3.5 119 362-492 366-502 (523)
254 PF15627 CEP76-C2: CEP76 C2 do 95.8 0.11 2.4E-06 48.0 11.0 126 363-494 9-151 (156)
255 KOG1265 Phospholipase C [Lipid 95.6 0.055 1.2E-06 61.7 9.7 110 40-164 703-822 (1189)
256 cd08398 C2_PI3K_class_I_alpha 95.5 0.084 1.8E-06 49.5 9.3 84 41-128 9-106 (158)
257 cd08398 C2_PI3K_class_I_alpha 95.5 0.14 3.1E-06 47.9 10.8 89 363-460 8-106 (158)
258 PF15627 CEP76-C2: CEP76 C2 do 95.5 0.18 3.8E-06 46.7 11.0 95 199-294 6-117 (156)
259 cd08693 C2_PI3K_class_I_beta_d 95.4 0.16 3.5E-06 48.6 10.9 93 363-460 8-120 (173)
260 cd08693 C2_PI3K_class_I_beta_d 95.4 0.097 2.1E-06 50.1 9.2 70 41-112 9-87 (173)
261 PF02453 Reticulon: Reticulon; 95.1 0.0032 6.8E-08 60.4 -1.9 67 691-757 90-156 (169)
262 PF10358 NT-C2: N-terminal C2 94.9 0.79 1.7E-05 42.3 13.9 119 40-168 7-138 (143)
263 KOG1265 Phospholipase C [Lipid 94.6 0.11 2.4E-06 59.5 8.1 95 202-311 703-806 (1189)
264 cd08397 C2_PI3K_class_III C2 d 94.1 0.45 9.8E-06 44.8 10.2 93 59-172 28-130 (159)
265 PF10358 NT-C2: N-terminal C2 93.8 1.3 2.8E-05 40.9 12.7 115 363-494 7-136 (143)
266 cd08687 C2_PKN-like C2 domain 93.8 0.67 1.4E-05 38.3 9.0 63 61-128 9-72 (98)
267 KOG1452 Predicted Rho GTPase-a 93.7 0.19 4.2E-06 50.7 7.0 96 33-130 44-143 (442)
268 cd08380 C2_PI3K_like C2 domain 93.2 0.51 1.1E-05 44.5 8.9 87 41-128 9-107 (156)
269 cd08380 C2_PI3K_like C2 domain 92.8 1 2.2E-05 42.4 10.4 89 364-460 9-107 (156)
270 cd08399 C2_PI3K_class_I_gamma 92.7 1.2 2.5E-05 42.7 10.4 93 364-460 11-122 (178)
271 cd08397 C2_PI3K_class_III C2 d 92.6 0.49 1.1E-05 44.6 7.7 69 386-460 29-107 (159)
272 cd08399 C2_PI3K_class_I_gamma 91.3 1.3 2.9E-05 42.3 9.2 70 41-111 11-88 (178)
273 cd04012 C2A_PI3K_class_II C2 d 90.5 1.1 2.4E-05 42.8 7.9 88 41-128 9-119 (171)
274 KOG1329 Phospholipase D1 [Lipi 89.8 0.38 8.2E-06 55.9 4.7 106 385-496 136-243 (887)
275 cd04012 C2A_PI3K_class_II C2 d 88.8 2 4.3E-05 41.1 8.2 90 203-292 9-119 (171)
276 PF00792 PI3K_C2: Phosphoinosi 88.5 3.6 7.7E-05 38.0 9.5 66 389-460 4-85 (142)
277 PF00792 PI3K_C2: Phosphoinosi 87.9 2.4 5.2E-05 39.1 8.0 73 75-168 23-104 (142)
278 smart00142 PI3K_C2 Phosphoinos 87.0 3.3 7.2E-05 35.6 7.7 70 42-111 13-91 (100)
279 cd08694 C2_Dock-A C2 domains f 86.6 4.6 9.9E-05 39.0 9.1 41 73-113 54-96 (196)
280 KOG1452 Predicted Rho GTPase-a 86.1 1.6 3.5E-05 44.3 5.9 76 361-438 49-125 (442)
281 cd08687 C2_PKN-like C2 domain 83.2 12 0.00026 31.2 8.6 85 385-492 7-92 (98)
282 PF11618 DUF3250: Protein of u 83.1 8.5 0.00019 33.5 8.4 92 390-492 2-104 (107)
283 smart00142 PI3K_C2 Phosphoinos 82.7 7.8 0.00017 33.3 8.1 69 365-436 13-91 (100)
284 PF14429 DOCK-C2: C2 domain in 82.0 4.9 0.00011 38.9 7.4 58 399-459 60-120 (184)
285 cd08695 C2_Dock-B C2 domains f 81.3 4 8.7E-05 39.3 6.3 40 73-112 54-95 (189)
286 PF11618 DUF3250: Protein of u 79.7 3.4 7.4E-05 35.9 4.8 95 64-164 2-104 (107)
287 PF14429 DOCK-C2: C2 domain in 79.1 5.8 0.00013 38.4 6.8 55 73-127 60-120 (184)
288 PF15625 CC2D2AN-C2: CC2D2A N- 77.8 12 0.00025 35.7 8.3 72 59-131 35-109 (168)
289 cd08695 C2_Dock-B C2 domains f 75.2 6.8 0.00015 37.8 5.8 56 399-458 54-112 (189)
290 cd08694 C2_Dock-A C2 domains f 74.7 9.3 0.0002 37.0 6.6 59 398-458 53-114 (196)
291 cd08696 C2_Dock-C C2 domains f 74.2 14 0.00031 35.4 7.7 62 398-459 54-118 (179)
292 cd05137 RasGAP_CLA2_BUD2 CLA2/ 72.9 7.6 0.00017 42.3 6.3 44 449-494 1-45 (395)
293 PF06398 Pex24p: Integral pero 70.6 11 0.00024 40.8 7.1 47 683-729 11-60 (359)
294 PF08151 FerI: FerI (NUC094) d 70.0 8.5 0.00018 30.7 4.3 48 124-174 2-51 (72)
295 KOG2419 Phosphatidylserine dec 66.1 0.49 1.1E-05 52.4 -4.5 173 222-461 304-481 (975)
296 PF11696 DUF3292: Protein of u 65.3 19 0.0004 41.2 7.4 64 693-759 107-171 (642)
297 cd08697 C2_Dock-D C2 domains f 65.1 30 0.00064 33.4 7.8 62 398-459 56-123 (185)
298 PF15625 CC2D2AN-C2: CC2D2A N- 64.5 34 0.00074 32.5 8.2 68 387-461 37-107 (168)
299 PTZ00447 apical membrane antig 62.1 92 0.002 32.6 10.9 120 199-337 55-176 (508)
300 cd08679 C2_DOCK180_related C2 62.0 20 0.00044 34.4 6.2 52 74-126 55-114 (178)
301 PF08151 FerI: FerI (NUC094) d 61.7 10 0.00022 30.3 3.3 44 288-337 2-45 (72)
302 KOG0904 Phosphatidylinositol 3 61.4 1.9E+02 0.0042 34.5 14.3 104 363-472 343-472 (1076)
303 cd08696 C2_Dock-C C2 domains f 60.3 27 0.00059 33.5 6.6 40 73-112 55-96 (179)
304 KOG3543 Ca2+-dependent activat 58.8 1E+02 0.0022 34.9 11.1 117 364-492 342-458 (1218)
305 cd08679 C2_DOCK180_related C2 58.3 29 0.00062 33.4 6.5 58 400-459 55-115 (178)
306 KOG1792 Reticulon [Intracellul 55.4 79 0.0017 31.7 9.1 59 692-750 131-189 (230)
307 PF14909 SPATA6: Spermatogenes 54.8 75 0.0016 29.0 8.0 87 42-131 4-102 (140)
308 KOG1329 Phospholipase D1 [Lipi 54.4 27 0.00058 41.3 6.4 85 61-151 138-225 (887)
309 PF09726 Macoilin: Transmembra 53.1 27 0.0006 41.1 6.4 17 726-742 90-106 (697)
310 cd08697 C2_Dock-D C2 domains f 52.8 46 0.001 32.1 6.8 39 73-111 57-97 (185)
311 PTZ00447 apical membrane antig 51.6 1.8E+02 0.004 30.5 11.0 108 364-490 59-170 (508)
312 KOG0694 Serine/threonine prote 48.0 5.2 0.00011 45.6 -0.5 95 59-166 26-122 (694)
313 KOG3543 Ca2+-dependent activat 46.5 2E+02 0.0044 32.6 11.1 100 39-149 340-443 (1218)
314 cd01459 vWA_copine_like VWA Co 40.9 47 0.001 33.9 5.1 41 485-533 33-74 (254)
315 KOG3385 V-SNARE [Intracellular 40.9 30 0.00065 30.1 3.1 18 670-687 38-55 (118)
316 PRK09458 pspB phage shock prot 40.5 1.3E+02 0.0029 24.1 6.3 23 675-697 42-64 (75)
317 PF10779 XhlA: Haemolysin XhlA 37.1 1.9E+02 0.0042 22.9 7.1 34 674-707 19-52 (71)
318 PF04842 DUF639: Plant protein 36.5 52 0.0011 38.0 5.0 60 687-746 492-554 (683)
319 PF02453 Reticulon: Reticulon; 36.4 12 0.00025 35.5 0.0 27 701-727 1-27 (169)
320 PF07162 B9-C2: Ciliary basal 35.7 3.9E+02 0.0084 25.3 10.5 81 204-290 4-102 (168)
321 PF04281 Tom22: Mitochondrial 31.7 2.2E+02 0.0049 25.9 7.3 40 669-708 49-90 (137)
322 TIGR02302 aProt_lowcomp conser 31.5 3.9E+02 0.0084 32.5 11.3 25 705-729 133-157 (851)
323 KOG2419 Phosphatidylserine dec 31.1 12 0.00025 42.1 -1.1 74 362-436 279-355 (975)
324 PF00957 Synaptobrevin: Synapt 29.2 1.6E+02 0.0035 24.4 5.8 28 684-711 40-67 (89)
325 PF14909 SPATA6: Spermatogenes 28.9 4.6E+02 0.0099 24.0 9.3 85 204-293 4-100 (140)
326 KOG0860 Synaptobrevin/VAMP-lik 28.2 1.6E+02 0.0036 25.8 5.6 27 687-713 69-95 (116)
327 KOG4111 Translocase of outer m 27.1 1.7E+02 0.0036 26.3 5.5 41 669-709 40-82 (136)
328 KOG0904 Phosphatidylinositol 3 26.3 1E+02 0.0022 36.7 5.1 67 41-110 344-421 (1076)
329 PF10409 PTEN_C2: C2 domain of 25.7 4.8E+02 0.01 23.3 10.3 88 37-124 1-93 (134)
330 PF14963 CAML: Calcium signal- 24.7 3.3E+02 0.0072 27.3 7.6 31 603-633 172-202 (263)
331 PF14924 DUF4497: Protein of u 24.5 1.8E+02 0.0039 25.5 5.4 64 425-494 28-105 (112)
332 PHA01159 hypothetical protein 23.7 2.9E+02 0.0062 24.2 6.2 33 677-709 5-37 (114)
333 KOG4027 Uncharacterized conser 22.5 4.1E+02 0.0089 24.7 7.2 67 386-458 25-109 (187)
334 PF06667 PspB: Phage shock pro 22.4 2.9E+02 0.0063 22.3 5.6 18 676-693 43-60 (75)
335 PF14851 FAM176: FAM176 family 21.8 3E+02 0.0064 25.7 6.4 12 593-604 16-27 (153)
336 KOG4269 Rac GTPase-activating 21.5 42 0.00092 39.5 1.1 67 39-112 758-829 (1112)
337 PF07162 B9-C2: Ciliary basal 21.5 6.9E+02 0.015 23.5 10.8 79 43-127 5-103 (168)
338 PF01544 CorA: CorA-like Mg2+ 20.5 3E+02 0.0065 28.3 7.3 74 673-752 194-267 (292)
339 PF06219 DUF1005: Protein of u 20.1 8E+02 0.017 26.9 9.8 112 385-496 34-170 (460)
No 1
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=1.5e-40 Score=300.49 Aligned_cols=156 Identities=76% Similarity=1.371 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCccCCccccCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004127 617 LPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHAEAAHPDELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLAT 696 (772)
Q Consensus 617 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~ 696 (772)
+|.++++++++++|+|++|++.|+|+|.++|+.+.+++||+|||+|.+|++++++.+++||+++++++++|||.||++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhcCCccCCCCCCchhhhhhcCCCCcCCCC
Q 004127 697 QGERFQSLISWRDPRATTLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML 772 (772)
Q Consensus 697 ~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~iP~r~i~~~~g~~~~~~P~~r~~~p~~~~~~~~r~Ps~~~~~~ 772 (772)
.+||++|+++|+||.+|++++++|++++++++++|+|+++++||+|++|||+||.++|+.+.|||+||||++|.||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.96 E-value=1.1e-26 Score=261.67 Aligned_cols=400 Identities=18% Similarity=0.219 Sum_probs=300.0
Q ss_pred CcCceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecC
Q 004127 35 LVEQMQYLYVRVVKAKDLPGKD--VTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKD 111 (772)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~~--~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~ 111 (772)
....+|+|.|+|.+|++|...+ ..+..|||+.+.+.+ ...||++++++.||+|||+|+..+... ++.|.++|||.+
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n 509 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN 509 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc
Confidence 4567899999999999999888 689999999999987 568999999999999999999999864 789999999988
Q ss_pred CC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeecCCCcCCCcCCCCCccCCCCCccc
Q 004127 112 VV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVAN 190 (772)
Q Consensus 112 ~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 190 (772)
.. +|+.+|++.++|..|..+.... .+-+.+.. +.... |+|...+.+.+........ . . ..|.
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~~~----ne~~e~~~--~~k~v-GrL~yDl~ffp~~e~k~~~----~-~--s~e~--- 572 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPVKK----NELYEFLR--NTKNV-GRLTYDLRFFPVIEDKKEL----K-G--SVEP--- 572 (1227)
T ss_pred ccCCcceeeeEEechHHhhhccccc----cceeeeec--cCccc-eEEEEeeeeecccCCcccc----c-c--ccCC---
Confidence 87 9999999999999998764322 22333332 22334 9999999886543321100 0 0 0000
Q ss_pred cccceeecCceEEEEEEEEEeecCCCCCCCCCCccEEEEEECCee-eeeccccCCCCCCceeceeEEEeeCCCCCcEEEE
Q 004127 191 IRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQA-SRTRISPSKTINPMWNEDLMFVAAEPFEEPLILT 269 (772)
Q Consensus 191 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~-~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~ 269 (772)
......|++.+++.++++|..... .+..-++++++..+. +.|++++. +.+|.||+++...+.+.....+.+.
T Consensus 573 -----~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 573 -----LEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred -----cccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEE
Confidence 011235889999999999975432 233344888888754 55577765 9999999999999988888889999
Q ss_pred EEEccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCC
Q 004127 270 VEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSD 349 (772)
Q Consensus 270 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~ 349 (772)
++|.. ..+.||+...+|.++.. .......||++..+ .|+|.+...+.+.+-..+
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li~---~t~dt~~~f~~~~~------------kg~I~~t~~W~Pi~~~~~-------- 699 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLID---RTLDTFLVFPLRNP------------KGRIFITNYWKPIYNAGG-------- 699 (1227)
T ss_pred ecccc---cCceeccccccchHhhh---ccccceEEEEcCCC------------cceEEEEeccceeecccc--------
Confidence 98864 45688888888888764 34557789999876 789988887655432111
Q ss_pred CCccccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCCcEE
Q 004127 350 LRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPCTVI 428 (772)
Q Consensus 350 ~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l 428 (772)
..++..+..++|.++|.|..|.+|... ...+++|||++|.+++. ++||.....++||.||+....++..+.+.+
T Consensus 700 --~~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~ 774 (1227)
T COG5038 700 --SSSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRL 774 (1227)
T ss_pred --ccceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEE
Confidence 112333467889999999999999865 67889999999999775 589999999999999999999999999999
Q ss_pred EEEEEeCCcCCCCCCCCCCcccEEEEEecCcccc----CceEeeeE--eeee-cCCCCcccccEEEEEEEEeecc
Q 004127 429 TVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET----DRVYTHSY--PLLV-LHPSGVRKMGEVQLAVRFTCSS 496 (772)
Q Consensus 429 ~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~----~~~~~~~~--~L~~-~~~~g~~~~G~i~l~~~f~~~~ 496 (772)
.++++|....+ .|..||.+.++++++.. +..+..-. ...+ ....|.+..|++++..+|-|..
T Consensus 775 ~l~~~~~~~sg------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~ 843 (1227)
T COG5038 775 TLECMDYEESG------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAV 843 (1227)
T ss_pred eeeeecchhcc------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeec
Confidence 99999999865 89999999999999854 22111110 0011 1111334468899999886654
No 3
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-27 Score=259.11 Aligned_cols=227 Identities=30% Similarity=0.465 Sum_probs=194.2
Q ss_pred cccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEe--cc
Q 004127 23 SITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSK--DR 97 (772)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v--~~ 97 (772)
..|++.|++.|+.... .|.|+|++|++|+..+..|.+||||++++.. .+.+|++.++++||+|||+|.|.+ .+
T Consensus 152 ~~G~l~fsl~Yd~~~~--~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~ 229 (421)
T KOG1028|consen 152 AVGNLQFSLQYDFELN--LLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEE 229 (421)
T ss_pred eeeeEEEEEEecccCC--EEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHH
Confidence 3788899999997655 9999999999999999778899999999986 468999999999999999999997 34
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC--CceeeeEEEEEEEeeecCCCcCCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG--DKVKTGELMLAVWMGTQADEAFPD 174 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~~~~~d~~~~~ 174 (772)
+....|.+.|||+|++ ++++||++.++|..+..... ...|.+|..... .... |+|.++++|.+
T Consensus 230 l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~-gel~~sL~Y~p-------- 295 (421)
T KOG1028|consen 230 LSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELA-GELLLSLCYLP-------- 295 (421)
T ss_pred hccCEEEEEEEecCCcccccEEEEEEecCcccccccc-----ceeeeccccccCCccccc-ceEEEEEEeec--------
Confidence 5678999999999999 99999999999998876532 467999987632 2233 79999998853
Q ss_pred cCCCCCccCCCCCccccccceeecCceEEEEEEEEEeecCCCCCCCCCCccEEEEEECC-----eeeeeccccCCCCCCc
Q 004127 175 AWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-----QASRTRISPSKTINPM 249 (772)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~ 249 (772)
..|.|+|.|++|++|..++.++.+||||++.+-. .+.+|.+.++ +.||+
T Consensus 296 -------------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv 349 (421)
T KOG1028|consen 296 -------------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPV 349 (421)
T ss_pred -------------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCc
Confidence 3468999999999999999999999999999853 4677888876 99999
Q ss_pred eeceeEEEeeCC--CCCcEEEEEEEccCCCCCceeEEEEEeccc
Q 004127 250 WNEDLMFVAAEP--FEEPLILTVEDRVAPNKDEVLGKCLIPLQA 291 (772)
Q Consensus 250 wne~f~f~~~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~ 291 (772)
|||+|.|.+... ....+.|+|||++.++.+++||.+.+....
T Consensus 350 ~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 350 FNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 999999988633 344799999999999999999999887764
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.6e-25 Score=240.87 Aligned_cols=230 Identities=23% Similarity=0.377 Sum_probs=184.2
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCccEEEEEECC---eeeeeccccCCCCCCceeceeEEEeeC--CCCCcEEEEEEEc
Q 004127 199 PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN---QASRTRISPSKTINPMWNEDLMFVAAE--PFEEPLILTVEDR 273 (772)
Q Consensus 199 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~l~i~V~d~ 273 (772)
.+...|.|+|++|++|+..+..|.+||||++++.. .+.+|++.++ ++||.|||+|.|.+.. .....|.++|||.
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~ 242 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDF 242 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEec
Confidence 44457999999999999999777899999999974 5788999987 9999999999999643 3456899999999
Q ss_pred cCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCcc
Q 004127 274 VAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPT 353 (772)
Q Consensus 274 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~ 353 (772)
|.++++++||++.++|..+.. ......|.++...... .....|+|.+.++.
T Consensus 243 drfsr~~~iGev~~~l~~~~~----~~~~~~w~~l~~~~~~-----~~~~~gel~~sL~Y-------------------- 293 (421)
T KOG1028|consen 243 DRFSRHDFIGEVILPLGEVDL----LSTTLFWKDLQPSSTD-----SEELAGELLLSLCY-------------------- 293 (421)
T ss_pred CCcccccEEEEEEecCccccc----cccceeeeccccccCC-----cccccceEEEEEEe--------------------
Confidence 999999999999999888753 1225679999876211 11123899988874
Q ss_pred ccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC---EEEEeecccCCCCCeecceEEEEeeC---CC
Q 004127 354 AKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIVDSFGPRWNEQYTWEVFD---PC 425 (772)
Q Consensus 354 ~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~---~~~~T~~~~~t~~P~Wne~~~~~v~~---~~ 425 (772)
.+..|.|+|.|++|++|..+ +..+.+||||++.+ ++ .+.||.+++++.||+|||+|.|.|.. ..
T Consensus 294 -----~p~~g~ltv~v~kar~L~~~---~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~ 365 (421)
T KOG1028|consen 294 -----LPTAGRLTVVVIKARNLKSM---DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAE 365 (421)
T ss_pred -----ecCCCeEEEEEEEecCCCcc---cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhe
Confidence 33348999999999999998 77799999999977 33 24789999999999999999998874 24
Q ss_pred cEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 426 TVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 426 ~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
..|.|+|||+|.++ .+++||.+.+.... .+....+|..+..
T Consensus 366 ~~l~l~V~d~d~~~------~~~~iG~~~lG~~~--~~~~~~hW~~m~~ 406 (421)
T KOG1028|consen 366 VSLELTVWDHDTLG------SNDLIGRCILGSDS--TGEEVRHWQEMLN 406 (421)
T ss_pred eEEEEEEEEccccc------ccceeeEEEecCCC--CchHHHHHHHHHh
Confidence 57999999999986 78899999988775 2222345554443
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.92 E-value=4.1e-23 Score=233.04 Aligned_cols=413 Identities=20% Similarity=0.202 Sum_probs=277.9
Q ss_pred ceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEE
Q 004127 29 LSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLV 107 (772)
Q Consensus 29 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V 107 (772)
++.+..+.+++|.++|+|..|++|......+.+|||+++.+++ .++||-....|.||.|||..+.++..+ .+.+.+++
T Consensus 700 ~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~ 778 (1227)
T COG5038 700 SSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLEC 778 (1227)
T ss_pred ccceeeecCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCC-ccEEeeee
Confidence 3555667899999999999999999888899999999999998 678999999999999999999999775 56799999
Q ss_pred EecCCC-CCceeEEEEEEccccCCCCCCCCC-----CCCeEEEeecCCCCceeeeEEEEEEEeeecCCCcCC--------
Q 004127 108 KDKDVV-LDDLIGRVMFDLNEVPKRIPPDSP-----LAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFP-------- 173 (772)
Q Consensus 108 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~-----~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~-------- 173 (772)
.|+... .|..+|++.+++.++..+.+.+.- ....--+|... |...+ |++.+.+.+.+..-....
T Consensus 779 ~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~-~~~~~-~tit~~~~f~p~~i~~s~ee~~~~~k 856 (1227)
T COG5038 779 MDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLT-GKKVK-GTITYKCRFYPAVIVLSLEEVRYVDK 856 (1227)
T ss_pred ecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccc-cCCcc-eeEEEEEEEEeecccCChHHhcchhh
Confidence 999888 999999999999999875332210 01111122221 34455 999998887653210000
Q ss_pred ------------------CcCCCCCccCCCCC--cccc------cccee----ecCceEEEEEEEEEeecCCCCCCCCCC
Q 004127 174 ------------------DAWHSDAATVSGEG--VANI------RSKVY----LSPKLWYVRVNIIEAQDLLPSDKSRFP 223 (772)
Q Consensus 174 ------------------~~~~~~~~~~~~~~--~~~~------~~~~~----~~~~~~~L~V~v~~a~~L~~~~~~~~~ 223 (772)
..|..|......+. .... +.+.. .+-..|.+.+.|+.++ |+. +
T Consensus 857 ~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~-l~~------~ 929 (1227)
T COG5038 857 VSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGE-LPD------P 929 (1227)
T ss_pred hhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEee-cCC------c
Confidence 11111111100000 0000 11111 1234567888888775 321 2
Q ss_pred ccEEEEEECCee--eeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCCCCCceeEEEEEeccccccccCCCCC
Q 004127 224 EVFVKAILGNQA--SRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPV 301 (772)
Q Consensus 224 dpyv~v~l~~~~--~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~ 301 (772)
.-|+.+.+.+.. +-+..... +..+.|.+.-...+.+..-....|.|.+. ....|..+++.+++-.++..+. -.
T Consensus 930 ~~~l~~f~Dd~~~~~i~s~~~~-t~~~~~~~~g~~~ireL~~s~~tfrv~K~-a~~~dk~v~e~t~~t~~lvs~~---~~ 1004 (1227)
T COG5038 930 GQYLQIFFDDASHPQIVSSKAP-TRGERNGESGDTFIRELEYSETTFRVTKN-AKKSDKVVCEVTLPTLDLVSNA---YE 1004 (1227)
T ss_pred ceEEEEEecCCCCceeeccCCc-ccccccchhhhhhhhhhccceEEEEeccC-CcccCceeeecccchhHHHHHh---hC
Confidence 346666666521 11221112 55566666555555555566788888775 2345778888887766665421 12
Q ss_pred CceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCccC
Q 004127 302 NTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTK 381 (772)
Q Consensus 302 ~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~ 381 (772)
..-|+.+.+. .++.+++.+.+... .. .+.. .-.+.|.|.|.+..|.||++.
T Consensus 1005 kp~~ln~~g~-------------~~~~v~~~~tPv~~----~l------~~~e---mv~nsG~l~I~~~~~~nl~~~--- 1055 (1227)
T COG5038 1005 KPSSLNFPGS-------------AKVLVQVSYTPVPV----KL------PPVE---MVENSGYLTIMLRSGENLPSS--- 1055 (1227)
T ss_pred CCcEEecCCC-------------ceEEEEEEEeeccc----cc------Ccce---eecccCcEEEEEeccCCCccc---
Confidence 3345544431 34555555433210 00 0100 123459999999999999988
Q ss_pred CCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCc
Q 004127 382 DGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLST 459 (772)
Q Consensus 382 ~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~ 459 (772)
|.+|.+||||++.+.++ .++|+++++|+||+|||.+.++|.. ..+.+.+.|+|||.- ++++.||++.++|+.
T Consensus 1056 d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~------~knd~lg~~~idL~~ 1129 (1227)
T COG5038 1056 DENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG------EKNDLLGTAEIDLSK 1129 (1227)
T ss_pred ccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC------CCccccccccccHhh
Confidence 78899999999999877 6999999999999999999999995 688999999999983 499999999999999
Q ss_pred cccCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 460 LETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 460 l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
++.+..+....+|.+.. .+ ...|.++....|-
T Consensus 1130 l~~~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~r 1161 (1227)
T COG5038 1130 LEPGGTTNSNIPLDGKT-FI-VLDGTLHPGFNFR 1161 (1227)
T ss_pred cCcCCccceeeeccCcc-eE-ecccEeecceecc
Confidence 99998888888887642 11 2346666666553
No 6
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.88 E-value=8.2e-22 Score=183.79 Aligned_cols=150 Identities=69% Similarity=1.124 Sum_probs=127.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCccEEEEEECCeeeeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCCCCCcee
Q 004127 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVL 282 (772)
Q Consensus 203 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~i 282 (772)
+|+|+|++|++|+..+..|.+||||++.++++.++|+++.+++.||.|||.|.|.+.++..+.+.|+|+|++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 37999999999999999999999999999999999999875469999999999999876677899999999988889999
Q ss_pred EEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCc
Q 004127 283 GKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRP 352 (772)
Q Consensus 283 G~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p 352 (772)
|++.++|.++....+.+....+||+|....+..+.++..+..|+|++++++.+.+++.+++.+|++|++|
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 9999999998753334456789999997631111233446689999999999999999999999998775
No 7
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.87 E-value=1.2e-21 Score=175.98 Aligned_cols=122 Identities=70% Similarity=1.190 Sum_probs=107.0
Q ss_pred EEEEEEEEecC---CCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCC
Q 004127 364 ILELGVLSAHG---LTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHG 440 (772)
Q Consensus 364 ~l~v~v~~a~~---L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~ 440 (772)
.|+|+|++|+| |+.+ |..|.+||||+|++|+++.||+++++++||+|||+|.|.+.++...|.|+|||++..+.
T Consensus 1 ~L~v~v~~A~~~~~l~~~---d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAK---DGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHW 77 (126)
T ss_pred CeEEEEEEeECCcccccc---ccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccc
Confidence 37899999999 5555 78899999999999999999999999999999999999999888899999999987520
Q ss_pred CCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEE
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQL 488 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 488 (772)
+....+|++||++.++++.+..+....+||+|...+.++.++.|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 011237999999999999999999999999999887777888899885
No 8
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.87 E-value=1.5e-21 Score=174.21 Aligned_cols=118 Identities=23% Similarity=0.368 Sum_probs=104.6
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccC-CCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVD-SFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQ 441 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~ 441 (772)
|.|+|+|++|++++.. + .|++||||+|.+|++++||+++.+ +.||+|||+|.|.+.+....|.|+|||+|.++
T Consensus 2 g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 7999999999998764 4 689999999999999999999876 89999999999999877778999999999876
Q ss_pred CCCCCCcccEEEEEecC-ccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 442 GGGGKDSRIGKVRIRLS-TLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 442 ~~~~~~~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
+|++||.+.|++. .+..++....||+|... +|..+.|+|+|+++|
T Consensus 76 ----~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ----MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred ----CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 8999999999996 57888888999999864 344567999999875
No 9
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.87 E-value=1.2e-21 Score=209.63 Aligned_cols=247 Identities=21% Similarity=0.326 Sum_probs=193.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCccEEEEEECC-eeeeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCCCCCce
Q 004127 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-QASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEV 281 (772)
Q Consensus 203 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~ 281 (772)
.|+|.|.+|++|+..+..|.+||||.|.+.+ ...||.++.+ ++.|.|.|.|.|.+... -..|.|.|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcc-eeeEEEEEeccc-cccccc
Confidence 4899999999999999999999999999987 5789999987 99999999999999653 357999999999 999999
Q ss_pred eEEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCccccccccCC
Q 004127 282 LGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPS 361 (772)
Q Consensus 282 iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 361 (772)
||.+.|.-.+|.. .+..+.|+.|..-+ .+....|++++.+.+.+... .
T Consensus 83 IGKvai~re~l~~----~~~~d~W~~L~~VD------~dsEVQG~v~l~l~~~e~~~----------------------~ 130 (800)
T KOG2059|consen 83 IGKVAIKREDLHM----YPGKDTWFSLQPVD------PDSEVQGKVHLELALTEAIQ----------------------S 130 (800)
T ss_pred cceeeeeHHHHhh----CCCCccceeccccC------CChhhceeEEEEEEeccccC----------------------C
Confidence 9999998888863 33588999998763 34567899999998754321 0
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE----EEeecccCCCCCeecceEEEEeeCC-------------
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW----VRTRTIVDSFGPRWNEQYTWEVFDP------------- 424 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~----~~T~~~~~t~~P~Wne~~~~~v~~~------------- 424 (772)
..+...++.++++.+. .+|.+||||++...+.+ .+|+++++|.+|.|+|.|.|.+...
T Consensus 131 -~~~~c~~L~~r~~~P~----~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~ 205 (800)
T KOG2059|consen 131 -SGLVCHVLKTRQGLPI----INGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEE 205 (800)
T ss_pred -CcchhhhhhhcccCce----eCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCccc
Confidence 1223344555555543 23459999999986655 4999999999999999999988632
Q ss_pred ---CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCC-c---ccccEEEEEEEEee
Q 004127 425 ---CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSG-V---RKMGEVQLAVRFTC 494 (772)
Q Consensus 425 ---~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-~---~~~G~i~l~~~f~~ 494 (772)
.-.|.+.+||+.... .+++|+|++.+++..+........||-|....... . ...|.+++.+.++-
T Consensus 206 e~~~l~irv~lW~~~~~~-----~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 206 EDDMLEIRVDLWNDLNLV-----INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred CCceeeEEEeeccchhhh-----hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 346889999954332 26999999999999987666678999998764211 1 23588888888864
No 10
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.87 E-value=2.3e-21 Score=207.58 Aligned_cols=248 Identities=21% Similarity=0.319 Sum_probs=195.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
.|.|.|.+|+||++.+..|..||||.|.++. +..||.++.+++.|.|.|.|+|.+... -..|.|-|||.| + +|+.|
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-ccccccc
Confidence 6899999999999999999999999999998 478999999999999999999998753 378999999999 6 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCC-CCceeeeEEEEEEEeeecCCCcCCCcCCCCCccCCCCCccccccceee
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK-GDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYL 197 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (772)
|.+.|.=.+|... .....|+.|.... ..+++ |+|.+++.+.....
T Consensus 84 GKvai~re~l~~~-----~~~d~W~~L~~VD~dsEVQ-G~v~l~l~~~e~~~---------------------------- 129 (800)
T KOG2059|consen 84 GKVAIKREDLHMY-----PGKDTWFSLQPVDPDSEVQ-GKVHLELALTEAIQ---------------------------- 129 (800)
T ss_pred ceeeeeHHHHhhC-----CCCccceeccccCCChhhc-eeEEEEEEeccccC----------------------------
Confidence 9999998888654 2467899998765 34577 99999997743211
Q ss_pred cCceEEEEEEEEEeecCCCCCCCCCCccEEEEEECCee----eeeccccCCCCCCceeceeEEEeeCC------------
Q 004127 198 SPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQA----SRTRISPSKTINPMWNEDLMFVAAEP------------ 261 (772)
Q Consensus 198 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~----~kT~~~~~~t~nP~wne~f~f~~~~~------------ 261 (772)
..-+...+++++++.+... +.+|||+++...+.. .+|++.++ |.+|.|+|.|.|.+...
T Consensus 130 ---~~~~~c~~L~~r~~~P~~~-~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 130 ---SSGLVCHVLKTRQGLPIIN-GQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred ---CCcchhhhhhhcccCceeC-CCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcc
Confidence 0124555666777766653 559999999987643 48999887 99999999999988654
Q ss_pred ---CCCcEEEEEEE-ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEc
Q 004127 262 ---FEEPLILTVED-RVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLD 334 (772)
Q Consensus 262 ---~~~~l~i~V~d-~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~ 334 (772)
....|++.+|+ ++....++|+|++.+++..+.. ......||.|...+ .|++.....-.|.+.++++..
T Consensus 205 ~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~----~s~p~~W~~Lqp~~-~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQ----KSSPAAWYYLQPRP-NGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred cCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhh----ccCccceEEEecCC-CcccCCCCCCccceeeeEEee
Confidence 23367788888 4555669999999999988762 23477899998762 344444455578888888753
No 11
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=2.1e-20 Score=166.74 Aligned_cols=117 Identities=21% Similarity=0.340 Sum_probs=101.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecC-CCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCce
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEK-KSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~ 117 (772)
|.|.|+|++|++++..+ .|++||||++.+++++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||++.+ +|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 78999999999988777 789999999999999999999865 79999999999999764 46799999999999 8999
Q ss_pred eEEEEEEcc-ccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 118 IGRVMFDLN-EVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 118 lG~~~i~l~-~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
||++.+++. .+..+ +....||+|.+.++.... |+|+++++|
T Consensus 80 iG~~~i~l~~~~~~g-----~~~~~W~~L~~~~~~~~~-g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNG-----ETLDDWYSLSGKQGEDKE-GMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCC-----CCccccEeCcCccCCCCc-eEEEEEEeC
Confidence 999999996 45544 236899999987766555 999999875
No 12
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=3.4e-20 Score=167.09 Aligned_cols=120 Identities=73% Similarity=1.212 Sum_probs=107.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCceeEE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGR 120 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~ 120 (772)
+|.|+|++|+||+.. .+||||++.+++++.+|++++++.||+|||+|.|.+..+....|.|+|||++..++++||+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 489999999999887 7899999999999999999999999999999999988766789999999999778999999
Q ss_pred EEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 121 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
+.+++.++..+...+.....+||+|.+..+.+.+ |+|.++++++
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~-G~i~l~~~~~ 120 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVG-GELMLAVWFG 120 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccc-eEEEEEEEec
Confidence 9999999987654455567899999988765666 9999999985
No 13
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=2.6e-20 Score=169.89 Aligned_cols=118 Identities=24% Similarity=0.392 Sum_probs=102.3
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeC------CCcEEEEEEEeCCcC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD------PCTVITVGVFDNGHI 438 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~------~~~~l~i~v~D~~~~ 438 (772)
++|+|++|+||+.+ +..|.+||||+|++++.++||++++++.||+|||.|.|.+.. ....|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 47899999999987 667899999999999999999999999999999999999976 367899999999987
Q ss_pred CCCCCCCCCcccEEEEEecCccc--cCceEeeeEeeeecCCCCcccccEEEEEEE
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLE--TDRVYTHSYPLLVLHPSGVRKMGEVQLAVR 491 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 491 (772)
+ +|++||++.++++++. .+.....||+|.+...+..+..|+|+++++
T Consensus 78 ~------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 G------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred C------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 5 8999999999999987 566778999998654333445799998763
No 14
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.83 E-value=8.7e-20 Score=165.26 Aligned_cols=120 Identities=27% Similarity=0.404 Sum_probs=106.9
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
.|+|+|++|+||+.. |..|.+||||++.+++ ..+||+++.++.||+|||.|.|.+.++.+.|.|+|||++.++
T Consensus 1 ~L~v~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 1 QLDIHLKEGRNLAAR---DRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred CeEEEEEEeeCCCCc---CCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 378999999999987 6668999999999987 578999999999999999999999887889999999999865
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
+|++||++.+++.++..+.....|++|.+.. +.+..|+|++.++|+|
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 ---TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLTP 121 (121)
T ss_pred ---CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEECC
Confidence 8999999999999999888889999997643 3456799999999865
No 15
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.82 E-value=4e-20 Score=167.26 Aligned_cols=116 Identities=30% Similarity=0.514 Sum_probs=98.3
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCC
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHG 440 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~ 440 (772)
..|.|+|.|.+|.||... |..++|||||++++|+++.||+++++++||+|||.|+|.+.+++..|.++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~r---D~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIR---DFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeee---ccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 358999999999999887 7768999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEE
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLA 489 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~ 489 (772)
.||+||.+.|+|..+.... ..++ |....+.|... |+|.++
T Consensus 80 -----~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s 119 (168)
T KOG1030|consen 80 -----SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLS 119 (168)
T ss_pred -----cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEec
Confidence 9999999999999998766 3444 44433333322 444433
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.82 E-value=1.8e-19 Score=164.36 Aligned_cols=117 Identities=28% Similarity=0.534 Sum_probs=101.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEecc-----CCCceEEEEEEecCCC-CC
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDR-----IQASVLEVLVKDKDVV-LD 115 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~-----~~~~~L~i~V~d~~~~-~d 115 (772)
++|+|++|+||+..+..|.+||||++.+++++.+|++++++.||+|||+|.|.+.. +....|.|+|||++.+ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999999988999999999999999999999999999999999999865 3568899999999988 89
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC--ceeeeEEEEEE
Q 004127 116 DLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD--KVKTGELMLAV 162 (772)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~~ 162 (772)
++||++.++|.++.... .....+||+|.+..+. +.. |+|.+++
T Consensus 81 ~~iG~~~i~l~~l~~~~---~~~~~~W~~L~~~~~~~~~~~-Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDK---GRRRTRWFKLESKPGKDDKER-GEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccC---CCcccEEEECcCCCCCCcccc-ceEEEEe
Confidence 99999999999987422 1235799999865542 345 9999886
No 17
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.81 E-value=2.9e-19 Score=168.52 Aligned_cols=124 Identities=23% Similarity=0.340 Sum_probs=108.4
Q ss_pred cEEEEEEEEecCCCCCccC---------------------------CCCCCcCcEEEEEECCEE-EEeecccCCCCCeec
Q 004127 363 GILELGVLSAHGLTPMKTK---------------------------DGRGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWN 414 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~---------------------------~~~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wn 414 (772)
|.|.|+|++|++|+++|.. ...|.+||||+|.+++.. .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999998621 246789999999998765 699999999999999
Q ss_pred ceEEEEeeCCCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 415 EQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 415 e~~~~~v~~~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
|+|.|.+.++.+.|.|+|+|++.+ ++++||++.++++++..+.....|++|.+...++.+..|+|+++++|+
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~-------~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVV-------GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCc-------CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 999999988888999999999875 468999999999999988888999999876555555678999999983
No 18
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=5.5e-19 Score=164.78 Aligned_cols=124 Identities=28% Similarity=0.498 Sum_probs=107.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecC-CCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEK-KSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
+|+|+|++|+||++.+..|.+||||++.+++++.+|+++.+ +.||+|||+|.|.+.++..+.|.|+|+|++.. +|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 48999999999999999999999999999999999999966 69999999999999876668999999999987 89999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCC-------CceeeeEEEEEEEeee
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG-------DKVKTGELMLAVWMGT 166 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-------~~~~~G~l~l~~~~~~ 166 (772)
|++.++|.++..+. .......+||+|.+..+ .+.+ |+|.+.+.+..
T Consensus 81 G~v~i~L~~l~~~~-~~~~~~~~W~~L~~~~~~~~~~k~~k~~-g~l~l~i~~~~ 133 (150)
T cd04019 81 GRAVIPLNDIERRV-DDRPVPSRWFSLERPGGAMEQKKKRKFA-SRIHLRLCLDG 133 (150)
T ss_pred EEEEEEHHHCcccC-CCCccCCceEECcCCCCcccccccCccc-ccEEEEEEecC
Confidence 99999999997542 22345689999998754 2345 99999998853
No 19
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=3.8e-19 Score=160.54 Aligned_cols=111 Identities=32% Similarity=0.482 Sum_probs=98.1
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEe---c
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSK---D 96 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v---~ 96 (772)
|++.+++.|+ .+.|.|+|++|+||+..+ .+.+||||++++.+ .++||++++++.||+|||+|.|.+ .
T Consensus 2 G~l~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~ 76 (122)
T cd08381 2 GQVKLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVE 76 (122)
T ss_pred CeEEEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChH
Confidence 6789999999 468999999999999999 89999999999974 468999999999999999999986 3
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
++....|.|+|||++.. ++++||++.++|.++.... ....||+|
T Consensus 77 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~-----~~~~W~~L 121 (122)
T cd08381 77 DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQ-----ETEKWYPL 121 (122)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCC-----CccceEEC
Confidence 45568999999999998 8999999999999998552 35789987
No 20
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=9.4e-19 Score=157.71 Aligned_cols=119 Identities=25% Similarity=0.423 Sum_probs=102.6
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGG 443 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~ 443 (772)
|.|.|++|+||+.++ +..|.+||||+|.++++ .+||+++++|+||.|||+|.|.+.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~--~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 678999999999863 23578999999999775 58999999999999999999999876789999999999875
Q ss_pred CCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 444 GGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 444 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
++++||.+.++++++..+.....||+|......+. ..|+|+++++|
T Consensus 76 --~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 --RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred --CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 89999999999999988888899999986533332 46999999875
No 21
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=1.3e-18 Score=159.83 Aligned_cols=124 Identities=27% Similarity=0.452 Sum_probs=105.7
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-C
Q 004127 36 VEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-L 114 (772)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~ 114 (772)
-+.+|.|+|+|++|++|+..+..|.+||||++.++++..+|++++++.||.|||+|.|.+.++..+.|.|+|||++.. +
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~ 90 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP 90 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence 466799999999999999999889999999999999999999999999999999999999877778999999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 115 DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
|++||++.+++.++............+|..|.... .|+|.+++++
T Consensus 91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~-----~g~i~l~~~~ 135 (136)
T cd08375 91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEVP-----TGEVVVKLDL 135 (136)
T ss_pred CCeeEEEEEEHHHhccccccCCCcEEEEecccccc-----ceeEEEEEEe
Confidence 99999999999999864332233344666664332 3999998865
No 22
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.79 E-value=1.5e-18 Score=157.05 Aligned_cols=118 Identities=28% Similarity=0.449 Sum_probs=104.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
+|+|+|++|+||+..+..|.+||||++.+++ ...+|+++.++.||+|||+|.|.+.++ .+.|.|+|||++.. +|++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 4899999999999999889999999999988 678999999999999999999998765 57899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
|.+.+++.++..+.+ ...|++|.+..+.+.. |+|.+.+.+.
T Consensus 80 G~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~~~-G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKP-----TEVKLKLEDPNSDEDL-GYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCC-----eEEEEECCCCCCccCc-eEEEEEEEEC
Confidence 999999999986532 5689999877654455 9999999774
No 23
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.79 E-value=1.2e-18 Score=157.12 Aligned_cols=117 Identities=31% Similarity=0.449 Sum_probs=101.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeec-CCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCcee
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFE-KKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLI 118 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~l 118 (772)
|.|+|+|++|+||+..+..+.+||||++.+++++.+|+++. ++.||+|||.|.|.+.....+.|.|+|||++..+|++|
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~i 80 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLI 80 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcce
Confidence 68999999999999999889999999999999999999885 57899999999999977656889999999987788999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
|++.+++.++..+. ...+|++|.... +.. |+|.++++|
T Consensus 81 G~~~~~l~~~~~~~-----~~~~w~~L~~~~--~~~-G~i~l~l~f 118 (118)
T cd08681 81 GDTEVDLSPALKEG-----EFDDWYELTLKG--RYA-GEVYLELTF 118 (118)
T ss_pred EEEEEecHHHhhcC-----CCCCcEEeccCC--cEe-eEEEEEEEC
Confidence 99999999987652 257899998643 344 999999864
No 24
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=1.5e-18 Score=155.87 Aligned_cols=113 Identities=32% Similarity=0.386 Sum_probs=96.8
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC----
Q 004127 41 YLYVRVVKAKD---LPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV---- 113 (772)
Q Consensus 41 ~L~V~v~~a~~---L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~---- 113 (772)
.|.|+|++|+| |...|..|++||||++++++++.||++++++.||+|||+|.|.+.+. ...|.|+|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~~~~~~ 79 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQSHWKE 79 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCCccccc
Confidence 38999999999 88889999999999999999999999999999999999999999764 46899999999875
Q ss_pred ---CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC--ceeeeEEEE
Q 004127 114 ---LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD--KVKTGELML 160 (772)
Q Consensus 114 ---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l 160 (772)
+|++||++.++|..+..+. ....||+|...++. +.. |+|.+
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~-g~l~~ 125 (126)
T cd08379 80 AVQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKM-GELEC 125 (126)
T ss_pred cCCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCC-cEEEe
Confidence 8999999999999997653 25789999965422 222 77653
No 25
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=2.9e-18 Score=155.90 Aligned_cols=119 Identities=26% Similarity=0.464 Sum_probs=101.8
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCC-cEEEEEEEeCCcCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPC-TVITVGVFDNGHIHG 440 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~-~~l~i~v~D~~~~~~ 440 (772)
..|+|.|++|+||+.. +.+||||+|.+++.. .||++ +++.||.|||.|.|.+..+. ..++|.|||++..+
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 5799999999999863 468999999998754 68987 46899999999999876553 67999999998865
Q ss_pred CCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
+|++||++.++|.++..+.....||+|......+.+..|+|+|+++|..
T Consensus 76 -----~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 -----KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred -----CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999888889999998765444556799999999964
No 26
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=2.2e-18 Score=157.45 Aligned_cols=120 Identities=34% Similarity=0.439 Sum_probs=102.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCC---CceEEEEEEecCCC--CC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQ---ASVLEVLVKDKDVV--LD 115 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~---~~~L~i~V~d~~~~--~d 115 (772)
.|+|+|++|+||++.+..|.+||||++.+++++++|++++++.||+|||.|.|.+.++. ...|.|+|||++.. +|
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 38999999999999988899999999999999999999999999999999999986532 46899999999876 79
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC-CCceeeeEEEEEEEee
Q 004127 116 DLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK-GDKVKTGELMLAVWMG 165 (772)
Q Consensus 116 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~~G~l~l~~~~~ 165 (772)
++||++.+++.++... .....+||+|+.+. ..+.+ |+|.+++++.
T Consensus 81 ~~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~-G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVR-GEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCcc-EEEEEEEEEc
Confidence 9999999999999732 23467999999753 22356 9999999873
No 27
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.78 E-value=1.1e-18 Score=157.52 Aligned_cols=116 Identities=30% Similarity=0.491 Sum_probs=100.9
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccC-CCCCeecceEEEEeeC-CCcEEEEEEEeCCcCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVD-SFGPRWNEQYTWEVFD-PCTVITVGVFDNGHIHG 440 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~~~ 440 (772)
|.|+|.|++|+||+.. +..|.+||||+|++++...||+++.+ +.||.|||.|.|.+.. ..+.|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 6899999999999987 66789999999999999999999865 7999999999999987 467899999998863
Q ss_pred CCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
+|++||++.+++.++..+....+||+|... | +..|+|++++.|
T Consensus 76 -----~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 76 -----KPDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred -----CCcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 489999999999998777667899999753 2 456999999876
No 28
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.78 E-value=2.7e-18 Score=157.78 Aligned_cols=119 Identities=25% Similarity=0.476 Sum_probs=102.2
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCc
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGH 437 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~ 437 (772)
....|.|+|+|++|+||+.. |..|.+||||++.+++..+||++++++.||.|||.|.|.+.++ .+.|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 46679999999999999987 6678999999999999999999999999999999999999875 5789999999998
Q ss_pred CCCCCCCCCCcccEEEEEecCcccc-----CceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 438 IHGQGGGGKDSRIGKVRIRLSTLET-----DRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 438 ~~~~~~~~~~~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
++ +|++||++.+++.++.. ...+..|.++. .+..|+|+|++.|
T Consensus 88 ~~------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~------~~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS------PDDFLGRTEIRVADILKETKESKGPITKRLLLH------EVPTGEVVVKLDL 135 (136)
T ss_pred CC------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc------cccceeEEEEEEe
Confidence 65 89999999999999875 33445555553 2345999999987
No 29
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.78 E-value=7.2e-19 Score=159.15 Aligned_cols=94 Identities=37% Similarity=0.545 Sum_probs=89.1
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CC
Q 004127 37 EQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LD 115 (772)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d 115 (772)
...|.|+|+|++|.||..+|..+++||||.+.+++++.||++++++.||+|||.|.|.+.++ ...|+++|||+|.+ +|
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCcc
Confidence 34689999999999999999889999999999999999999999999999999999999986 68899999999999 99
Q ss_pred ceeEEEEEEccccCCC
Q 004127 116 DLIGRVMFDLNEVPKR 131 (772)
Q Consensus 116 ~~lG~~~i~l~~l~~~ 131 (772)
|+||.++|+|..+...
T Consensus 82 D~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEA 97 (168)
T ss_pred cccceeeeccHHHHHH
Confidence 9999999999999866
No 30
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.78 E-value=2.9e-18 Score=154.14 Aligned_cols=114 Identities=25% Similarity=0.482 Sum_probs=102.4
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCCCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~~~ 442 (772)
+++|.|++|+||+.. +..|.+||||++++++..++|+++++|.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~~~V~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~--- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK--- 74 (116)
T ss_pred CEEEEEEEEECCCCC---CCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence 378999999999987 5568899999999999999999999999999999999999876 789999999999865
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
+|++||++.++++++..+.....|++|... .|+|++++.++
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 75 ---KDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred ---CCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 899999999999999988888999999642 49999888764
No 31
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.78 E-value=1.6e-18 Score=151.69 Aligned_cols=110 Identities=18% Similarity=0.290 Sum_probs=91.6
Q ss_pred CCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeeecCCCCCeeccEEEEEec--cCC
Q 004127 26 GDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN----YKGTTKHFEKKSNPEWNQCFAFSKD--RIQ 99 (772)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~----~~~kT~~~~~t~nP~Wne~f~f~v~--~~~ 99 (772)
.+.||+.|+.. .+.|.|+|++|+||+ . .|.+||||++++.. .+.+|+++++|.||+|||+|.|.+. ++.
T Consensus 2 ~l~fsL~Y~~~--~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~ 76 (118)
T cd08677 2 KLHYSLSYDKQ--KAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESL 76 (118)
T ss_pred eEEEEEEEcCc--CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhC
Confidence 45678888754 569999999999999 3 36799999999974 4779999999999999999999984 456
Q ss_pred CceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 100 ASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 100 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
...|.|.|||+|++ ++++||++.+++.++.... ...+|..|
T Consensus 77 ~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~-----~~~~W~~~ 118 (118)
T cd08677 77 DGTLTLTLRCCDRFSRHSTLGELRLKLADVSMML-----GAAQWVDL 118 (118)
T ss_pred CcEEEEEEEeCCCCCCCceEEEEEEccccccCCc-----cccchhcC
Confidence 78899999999999 9999999999999875442 24467554
No 32
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.78 E-value=4e-18 Score=154.13 Aligned_cols=118 Identities=29% Similarity=0.497 Sum_probs=103.5
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
|.|+|.|++|+||+.+ +..+.+||||+|.+++..++|++++++.||.|||+|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 6899999999999987 6668899999999999999999999999999999999999877889999999998764
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
++++||++.+++.++..+. .+||+|......+ +..|+|.++++|
T Consensus 75 ---~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 75 ---KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred ---CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 8899999999999998776 6899997653322 346999999887
No 33
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=2.8e-18 Score=156.74 Aligned_cols=121 Identities=31% Similarity=0.485 Sum_probs=102.9
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC----CcEEEEEEEeCCcCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP----CTVITVGVFDNGHIH 439 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~----~~~l~i~v~D~~~~~ 439 (772)
.|.|+|++|+||+.. +..|.+||||++.++++.+||++++++.||+|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~L~V~vi~A~~L~~~---d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPK---DGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 378999999999987 6668899999999999999999999999999999999999864 357999999988752
Q ss_pred CCCCCCCCcccEEEEEecCccc-cCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 440 GQGGGGKDSRIGKVRIRLSTLE-TDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 440 ~~~~~~~~~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
+++++||++.++++++. .+.....||+|......+ +..|+|+|++.||
T Consensus 78 -----~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~ 126 (127)
T cd04022 78 -----RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYIT 126 (127)
T ss_pred -----CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEEc
Confidence 26899999999999997 566778999998653322 3569999999875
No 34
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.77 E-value=2.7e-18 Score=155.89 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=100.5
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVT-GSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~- 97 (772)
|++++++.|+... +.|.|+|++|+||++.+.. |.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~Y~~~~--~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 2 GEIEFALHYNFRT--SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred cEEEEEEEEeCCC--CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence 7789999999755 4999999999999998864 8999999999964 36799999999999999999999843
Q ss_pred -CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 98 -IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 98 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
+....|.|.|||.+.. ++++||++.|+|.++..... .+....||+|
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~--~~~~~~W~~l 127 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDT--DSQRFLWYPL 127 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCC--CccccceEEC
Confidence 3457999999999988 99999999999999965532 2356799998
No 35
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.77 E-value=3.2e-18 Score=157.40 Aligned_cols=116 Identities=25% Similarity=0.273 Sum_probs=100.0
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKD-VTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR 97 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~ 97 (772)
.|++.+++.|. .+.|.|+|++|+||++.+ ..|.+||||++++.+ .+.||++++++.||+|||+|.|.+.
T Consensus 17 ~G~l~lsl~y~----~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~- 91 (146)
T cd04028 17 MGDIQLGLYDK----KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS- 91 (146)
T ss_pred cceEEEEEEeC----CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-
Confidence 68899999984 478999999999999864 568899999999964 2679999999999999999999998
Q ss_pred CCCceEEEEEE-ecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 98 IQASVLEVLVK-DKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 98 ~~~~~L~i~V~-d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
+.+..|.|+|| |.+.+ ++++||++.|+|.++..+. ....||+|.+..
T Consensus 92 l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~~ 140 (146)
T cd04028 92 PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSN-----LVIGWYKLFPTS 140 (146)
T ss_pred CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCC-----CceeEEecCCcc
Confidence 56789999999 57777 8999999999999986542 257899998754
No 36
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=6e-18 Score=152.11 Aligned_cols=113 Identities=35% Similarity=0.531 Sum_probs=101.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCceeE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLIG 119 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~lG 119 (772)
+|+|+|++|+||+..+..+.+||||++++++++.+|+++++|.||.|||+|.|.+.+.....|.|+|||++.. +|++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 4789999999999999889999999999999999999999999999999999999776678999999999998 999999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 120 RVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
++.++|.++..+. ....|++|.+.. |+|.+.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~~------G~~~~~~~~ 114 (116)
T cd08376 81 RCEIDLSALPREQ-----THSLELELEDGE------GSLLLLLTL 114 (116)
T ss_pred EEEEeHHHCCCCC-----ceEEEEEccCCC------cEEEEEEEe
Confidence 9999999987653 367899998652 888887765
No 37
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.77 E-value=5e-18 Score=154.77 Aligned_cols=120 Identities=20% Similarity=0.379 Sum_probs=102.5
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC--EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~--~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
|.|+|++|+||+. ..|.+||||++.+++ +.+||+++++|.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 4689999999985 347899999999974 568999999999999999999999766788999999999864
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEeec
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCS 495 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 495 (772)
+|++||++.+++.++..+.....|++|......+.+..|+|++++.|...
T Consensus 73 ---~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 ---DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred ---CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 89999999999999988777789999986533334457999999999653
No 38
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.77 E-value=2.7e-18 Score=155.86 Aligned_cols=115 Identities=27% Similarity=0.429 Sum_probs=99.1
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVT-GSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
|++.+++.|+.. .+.|.|+|++|+||++.+.. |.+||||++++.+ .++||++++++.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~~~--~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYDPK--LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEECC--CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 678999999765 45899999999999999875 8999999999963 3579999999999999999999985
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
++....|.|+|||++.. ++++||++.++|.++.... ....||+|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSN-----TQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCC-----CCcceEECc
Confidence 34567899999999988 9999999999999996542 356899984
No 39
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=99.76 E-value=3.9e-18 Score=185.53 Aligned_cols=186 Identities=21% Similarity=0.310 Sum_probs=155.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHccch--hHHHHHHHHHHHHhhcccc-CCC
Q 004127 561 WSMRRSKANFFRIMGVLSSLISVGKWFDQICNWKNPLTTILIHILFIILVLYPEL--ILPTVFLYLFLIGIWNFRW-RPR 637 (772)
Q Consensus 561 ~s~~~l~~n~~rl~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l--~~p~~~l~~~~~~~~~~~~-~~~ 637 (772)
....-+=+|+.-|++++.|+..++.+++.|.+|++|.+|+.|++++++++|..|+ ++|++++++++.|++.+.. +.+
T Consensus 480 vkveGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g 559 (683)
T PF04842_consen 480 VKVEGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLG 559 (683)
T ss_pred HhhcCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3444556899999999999999999999999999999999999999999999776 7999999999999997654 333
Q ss_pred CCCCCCccCCccccCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccccCCchhHHHHH
Q 004127 638 HPPHMDTRLSHAEAAHPDELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFV 717 (772)
Q Consensus 638 ~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~~t~~~~ 717 (772)
.+. ++... ..+|+...++++.++|+.+.++++.|+.++.++.|+|+++.|..|.+|..++
T Consensus 560 ~~~------------------~~v~V--~~pP~~nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va 619 (683)
T PF04842_consen 560 KSF------------------GEVTV--RDPPPKNTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVA 619 (683)
T ss_pred Ccc------------------ceEEe--cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHH
Confidence 221 11111 2345567799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhh-hhcCCccCCCC----CCchhhhhhcCCC
Q 004127 718 TFCLIAAIVLYVTPFQVVALLAGIY-VLRHPRFRHKL----PSVPLNFFRRLPA 766 (772)
Q Consensus 718 ~~l~~~~~~~~~iP~r~i~~~~g~~-~~~~P~~r~~~----p~~~~~~~~r~Ps 766 (772)
++++++|+++.++|+||++++..+. |+|+=.+|+.- -..+..+|-++|.
T Consensus 620 ~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 620 LALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999998888 77876687631 1133456777774
No 40
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.76 E-value=8.6e-18 Score=154.12 Aligned_cols=122 Identities=30% Similarity=0.443 Sum_probs=105.1
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCc
Q 004127 40 QYLYVRVVKAKDLPGKDV--TGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDD 116 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~ 116 (772)
|.|+|+|++|+||+..+. .+.+||||++.+++++.+|++++++.||.|||+|.|.+.++..+.|.|+|||++.. +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999999887 78999999999999999999999999999999999999876678999999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC---ceeeeEEEEEEEe
Q 004127 117 LIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD---KVKTGELMLAVWM 164 (772)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~---~~~~G~l~l~~~~ 164 (772)
+||++.+++.++.... ......+||+|.+.... ... |+|.+++++
T Consensus 81 ~lG~~~i~l~~~~~~~--~~~~~~~w~~L~~~~~~~~~~~~-G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADG--KTGQSDKWITLKSTRPGKTSVVS-GEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhccc--ccCccceeEEccCcccCcccccc-ceEEEEEEC
Confidence 9999999999997431 12335799999876422 245 999998853
No 41
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.76 E-value=6.1e-18 Score=152.64 Aligned_cols=100 Identities=24% Similarity=0.375 Sum_probs=89.0
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEee---C-CCcEEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVF---D-PCTVITVGVF 433 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~---~-~~~~l~i~v~ 433 (772)
+.|.|.|++|+||+.+ + .|.+||||+|++.+ .+.||++++++.||+|||+|.|++. + ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~---~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLL---D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCC---C-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 7899999999999988 5 68999999999953 4689999999999999999999973 2 3578999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEee
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 472 (772)
|++.++ ++++||++.++|+++..++....||+|
T Consensus 89 d~d~~~------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999865 899999999999999888778899987
No 42
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.76 E-value=6.8e-18 Score=149.10 Aligned_cols=102 Identities=30% Similarity=0.438 Sum_probs=89.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCcee
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLI 118 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~l 118 (772)
|+.|.|+|++|++|+..+ ..||||++++++++.+|+++++ .||.|||+|.|.+.+.. ..|.|+|||++.++|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCcCCCce
Confidence 578999999999997644 5699999999999999999977 59999999999998754 449999999997799999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
|++.|+|.++..+. .++.++||+|+..
T Consensus 76 G~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccCC---CCCCCccEecChH
Confidence 99999999998763 4667899999854
No 43
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.75 E-value=1.1e-17 Score=153.46 Aligned_cols=120 Identities=22% Similarity=0.424 Sum_probs=102.5
Q ss_pred cEEEEEEEEecCCCCCccCCC--CCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCcCC
Q 004127 363 GILELGVLSAHGLTPMKTKDG--RGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGHIH 439 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~--~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~~ 439 (772)
|.|+|.|++|+||+.. +. .+.+||||++.+++..++|++++++.||.|||+|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAK---DRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 6899999999999987 54 6889999999999999999999999999999999999997 5789999999999865
Q ss_pred CCCCCCCCcccEEEEEecCccc---cCceEeeeEeeeecCC-CCcccccEEEEEEE
Q 004127 440 GQGGGGKDSRIGKVRIRLSTLE---TDRVYTHSYPLLVLHP-SGVRKMGEVQLAVR 491 (772)
Q Consensus 440 ~~~~~~~~~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~-~g~~~~G~i~l~~~ 491 (772)
++++||.+.+++.++. .......||+|.+... +.....|+|+|++.
T Consensus 78 ------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 78 ------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred ------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 8899999999999986 3344689999986532 22235799998875
No 44
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.75 E-value=9.8e-18 Score=146.76 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=86.4
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC----EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEE
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ----KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVG 431 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~----~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~ 431 (772)
.+..+.|.|.|++|+||+ . + |.+||||++++.. .+.+|+++++|+||+|||+|.|.|.. +...|.|.
T Consensus 10 ~~~~~~L~V~vikA~~L~-~---~--g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V---D--AGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C---C--CCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 344589999999999998 2 3 4599999999953 46799999999999999999999884 46789999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEee
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 472 (772)
|||+|.++ ++++||++.+++.++.-+...++|..|
T Consensus 84 V~d~Drfs------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 84 LRCCDRFS------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEeCCCCC------CCceEEEEEEccccccCCccccchhcC
Confidence 99999986 999999999999988655555777654
No 45
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.75 E-value=2.3e-18 Score=191.09 Aligned_cols=406 Identities=19% Similarity=0.219 Sum_probs=256.8
Q ss_pred cceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccC---------
Q 004127 28 KLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI--------- 98 (772)
Q Consensus 28 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--------- 98 (772)
.+|+-++- -..+.+++.|.+|++|.+.+..+-+|||+.+.+.++.+.|.++.+|+||.|+++..|.-.+.
T Consensus 195 ~~Sc~~~e-~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~ 273 (1105)
T KOG1326|consen 195 EFSCYLSE-VIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLK 273 (1105)
T ss_pred ceEEecch-hhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhc
Confidence 45555543 33467999999999999999999999999999999999999999999999999999973221
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeecCCCcCCCcCC
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAFPDAWH 177 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~ 177 (772)
.-..+.++|||.++. .++++|.......-... +..-.|+++.... ... |++.++..+...+. +-.|-
T Consensus 274 ~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~------~p~lkw~p~~rg~--~l~-gd~l~a~eliq~~~---~i~~p 341 (1105)
T KOG1326|consen 274 NPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ------CPALKWVPTMRGA--FLD-GDVLIAAELIQIGK---PIPQP 341 (1105)
T ss_pred CCCeEEEEeehhhhhchHHhhcccccceEEEec------CCccceEEeeccc--ccc-cchhHHHHHHhhcC---CCCCC
Confidence 125788999999998 99999998776544332 1245799987643 333 77776654332221 01111
Q ss_pred CCCccCCCCC-ccccccceeecCceEEEEEEEEEeecCCCCCCCCCCccEEEEEECCeeeeeccccCCCCCCceeceeEE
Q 004127 178 SDAATVSGEG-VANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMF 256 (772)
Q Consensus 178 ~~~~~~~~~~-~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f 256 (772)
.......... ....|+ ..+.+.+.|-...-+++..........|-+.+.+|++..++..+.+.-.||.++..|.+
T Consensus 342 ~~~~~~~~~~vp~~iRp----~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~ 417 (1105)
T KOG1326|consen 342 PPQREIIFSLVPKKIRP----KTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLG 417 (1105)
T ss_pred CcccccceeccccCCCc----ceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEE
Confidence 1110000000 011121 23444455444455555555445567899999999999988888777789999977655
Q ss_pred EeeC-CC----CCcEEEEEEEccCCCCCceeEEEEEecc-ccc----------cccC--------------CCCCCceeE
Q 004127 257 VAAE-PF----EEPLILTVEDRVAPNKDEVLGKCLIPLQ-AVQ----------RRLD--------------HKPVNTRWF 306 (772)
Q Consensus 257 ~~~~-~~----~~~l~i~V~d~d~~~~d~~iG~~~i~l~-~l~----------~~~~--------------~~~~~~~w~ 306 (772)
.... +. ...+.++|.|.+.++.....|+|.+.-. ... .+.+ .....+.|+
T Consensus 418 ~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l 497 (1105)
T KOG1326|consen 418 RLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTL 497 (1105)
T ss_pred EEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCC
Confidence 4322 22 3378899999999999999999987521 110 0000 000011111
Q ss_pred EcccCccccC---------------ccccc--cccceEEEEEEE----------------------cCCcc--ccCCCcc
Q 004127 307 NLEKHVIVDG---------------EKKET--KFSSRIHLRICL----------------------DGGYH--VLDESTH 345 (772)
Q Consensus 307 ~L~~~~~~g~---------------~~~~~--~~~G~l~l~i~~----------------------~~~~~--~~~~~~~ 345 (772)
+......+++ ..+.. .......++++- .|... ..+++..
T Consensus 498 ~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Iv 577 (1105)
T KOG1326|consen 498 PASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIV 577 (1105)
T ss_pred CCCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCcccchh
Confidence 1111100000 00000 011123333321 11100 0000000
Q ss_pred ---------c------CCCCCcccccc---ccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE--EEeecc
Q 004127 346 ---------Y------SSDLRPTAKQL---WKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW--VRTRTI 405 (772)
Q Consensus 346 ---------~------~~~~~p~~~~~---~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~--~~T~~~ 405 (772)
| +.+..|..-+. -.+..-.++|.|++|.+|.+. |.+|.+|||+++.+|++. -+++.+
T Consensus 578 g~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d~~~yi 654 (1105)
T KOG1326|consen 578 GEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLDRAHYI 654 (1105)
T ss_pred hhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhhhhhcC
Confidence 0 01111110000 023345788999999999988 888999999999999988 577789
Q ss_pred cCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCc
Q 004127 406 VDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLST 459 (772)
Q Consensus 406 ~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~ 459 (772)
.+|+||+|++.|++....| ...++++|||+|..+ +|+.||...++|..
T Consensus 655 p~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 655 PNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA------QDEKIGETTIDLEN 703 (1105)
T ss_pred cCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc------ccchhhceehhhhh
Confidence 9999999999999999887 467999999999875 89999999999875
No 46
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.75 E-value=1e-17 Score=151.85 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=98.3
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCC-CCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDV-TGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~- 97 (772)
|++.++++|+ +..+.|.|+|++|+||+..+. .|.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~y~--~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 2 GEILFSLSYD--YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred cEEEEEEEEE--CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 7788999996 455689999999999998765 47899999999963 35799999999999999999999853
Q ss_pred -CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 98 -IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 98 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
+....|.|+|||++.. ++++||++.++|.++.... ....||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~-----~~~~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDS-----QHEECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccC-----CcccEEECc
Confidence 3467899999999988 9999999999999997653 267899984
No 47
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.75 E-value=1e-17 Score=152.24 Aligned_cols=119 Identities=29% Similarity=0.449 Sum_probs=101.3
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCCCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~~~ 442 (772)
+|+|+|++|++|+.+ +..+.+||||+|.+++..++|++++++.||.|||+|.|.+.+. ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~---d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 488999999999987 6667899999999999999999999999999999999999875 578999999999865
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCCC---CcccccEEEEEEE
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPS---GVRKMGEVQLAVR 491 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~~ 491 (772)
++++||.+.+++.++..+.....||.|...... ..+..|.|++.|+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 ---KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred ---CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 889999999999999876667899999764322 1234688887763
No 48
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=1.7e-17 Score=152.53 Aligned_cols=105 Identities=22% Similarity=0.323 Sum_probs=90.7
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C---EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEE-eCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVF-DNG 436 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~--~---~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~-D~~ 436 (772)
|.|.|.|++|+||++.+ +..|.+||||++++. + .+.||+++++|+||+|||+|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 78999999999998752 245789999999993 3 268999999999999999999999866789999999 566
Q ss_pred cCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 437 HIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 437 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
.++ ++++||.+.|+|+++..+.....||+|...
T Consensus 107 ~~~------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMD------KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCC------CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 643 889999999999999877778999999754
No 49
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.75 E-value=3.6e-17 Score=148.92 Aligned_cols=119 Identities=20% Similarity=0.318 Sum_probs=101.2
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
+.++|+|++|++|... +..|.+||||++.++++.+||++++++.||+|||.|.|.+.++...|.|+|||++.+
T Consensus 3 ~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~---- 75 (126)
T cd04046 3 VVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL---- 75 (126)
T ss_pred EEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC----
Confidence 6899999999999887 667899999999999999999999999999999999999988888999999999864
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCC-CCcccccEEEEEEEEe
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHP-SGVRKMGEVQLAVRFT 493 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~-~g~~~~G~i~l~~~f~ 493 (772)
+|++||.+.+++.++..+. .++++|..... ...+..|+|.+++.+.
T Consensus 76 ---~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 76 ---CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ---CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 6899999999999865444 67888864321 2234579999888764
No 50
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.75 E-value=9.7e-18 Score=147.53 Aligned_cols=103 Identities=29% Similarity=0.446 Sum_probs=93.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCceeEE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGR 120 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~ 120 (772)
.|.|+|++|+||+..+..+.+||||++++++++.+|++++++.||+|||.|.|.+..+..+.|.|+|+|.+. +++||+
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~ 78 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGS 78 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEE
Confidence 489999999999999888999999999999999999999999999999999999987667899999999886 899999
Q ss_pred EEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 121 VMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 121 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
+.++|.++.... ....++||+|.+.
T Consensus 79 ~~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc---cceeeeeEecCCC
Confidence 999999998653 2446899999864
No 51
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.75 E-value=1.9e-17 Score=150.15 Aligned_cols=105 Identities=16% Similarity=0.255 Sum_probs=90.4
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGV 432 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v 432 (772)
..+.|.|.|++|+||+..+ ...|.+||||+|.+. ..+.||++++++.||+|||+|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~--~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGD--EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred CCCeEEEEEEEecCCCccC--CCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 3479999999999998762 235789999999883 235799999999999999999999875 356899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
||++.++ ++++||.+.+++.++...+..+.||||.
T Consensus 91 ~d~~~~~------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 91 WHYDRFG------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EECCCCC------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9999865 8999999999999998888889999983
No 52
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=1.9e-17 Score=152.87 Aligned_cols=118 Identities=26% Similarity=0.432 Sum_probs=100.3
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-------EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCc
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-------WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGH 437 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-------~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~ 437 (772)
|+|+|++|+||+.. +..|.+||||+|.+++. .++|+++++|.||.|||+|.|.+......|.|+|||++.
T Consensus 2 L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCC
Confidence 78999999999987 66788999999999654 479999999999999999999987767789999999998
Q ss_pred CCCCCCCCCCcccEEEEEecCccccCc------eEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 438 IHGQGGGGKDSRIGKVRIRLSTLETDR------VYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 438 ~~~~~~~~~~~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
++ ++++||++.+++.++..+. ....||+|......+ +..|+|++++.|
T Consensus 79 ~~------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 79 LT------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CC------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 65 8999999999999987543 246999998653333 346999999987
No 53
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.74 E-value=4.2e-17 Score=147.42 Aligned_cols=116 Identities=34% Similarity=0.599 Sum_probs=102.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
|.|.|+|++|+||+..+..+.+||||++++++...+|++++++.||.|||+|.|.+.+. ...|.|+|||++.. ++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 68999999999999999888999999999999889999999999999999999998764 57899999999987 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEEEe
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAVWM 164 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 164 (772)
|++.+++.++..+ ...||+|.+..+. ..+ |+|.+++.+
T Consensus 80 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~-G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNG-------ERKWYALKDKKLRTRAK-GSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCC-------CceEEECcccCCCCcee-eEEEEEEEe
Confidence 9999999998644 3589999876533 355 999998865
No 54
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=4.3e-17 Score=150.35 Aligned_cols=122 Identities=25% Similarity=0.417 Sum_probs=99.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccC---------CCceEEEEEEec
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI---------QASVLEVLVKDK 110 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~---------~~~~L~i~V~d~ 110 (772)
++|+|+|++|++|+..+..|.+||||++.+++++.+|+++++|.||+|||+|.|.+..+ ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 47999999999999999999999999999999999999999999999999999985322 125799999999
Q ss_pred CCC-CCceeEEEEEE-ccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 111 DVV-LDDLIGRVMFD-LNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 111 ~~~-~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
+.. +|++||++.+. +..+... .......+|++|....+ .. |+|.+++.+..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~~--~~-Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGGQ--SA-GELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCCC--ch-hheeEEeEEEE
Confidence 988 89999999974 4444321 13455789999985532 34 99999998754
No 55
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=3.1e-17 Score=149.07 Aligned_cols=116 Identities=32% Similarity=0.486 Sum_probs=99.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCceeE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLIG 119 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~lG 119 (772)
.|+|+|++|++|+..+..+.+||||++++++++.+|++++++.||.|||+|.|.+.......|.|+|||++.. ++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 4899999999999999888999999999999999999999999999999999999776568899999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCC-----ceeeeEEEEEE
Q 004127 120 RVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-----KVKTGELMLAV 162 (772)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-----~~~~G~l~l~~ 162 (772)
.+.++|.++.... ....||.|.+.... +. .|.|.+.+
T Consensus 81 ~~~~~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~~~-~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAK-----QEEGWFRLLPDPRAEEESGGN-LGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCC-----CCCCEEECCCCCCCCccccCc-eEEEEEEe
Confidence 9999999997542 24689999864311 12 38888765
No 56
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.74 E-value=1.8e-17 Score=150.33 Aligned_cols=117 Identities=26% Similarity=0.511 Sum_probs=100.7
Q ss_pred cEEEEEEEEecCCCCCccCC---CCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCcC
Q 004127 363 GILELGVLSAHGLTPMKTKD---GRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGHI 438 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~---~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~ 438 (772)
|.|+|.|++|+||+..+... ..|.+||||+|++++..++|++++++.||.|||.|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 67999999999999874211 14689999999999999999999999999999999999986 578999999999863
Q ss_pred CCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
++++||.+.+++.++..+.....||+|.+. ..|+|+++++|
T Consensus 81 -------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 81 -------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred -------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 789999999999999887778899999752 45999988764
No 57
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.74 E-value=1.8e-17 Score=150.46 Aligned_cols=103 Identities=20% Similarity=0.366 Sum_probs=89.4
Q ss_pred ccEEEEEEEEecCCCCCccCCCC-CCcCcEEEEEEC-----CEEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGR-GTTDAYCVAKYG-----QKWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~-g~~dpyv~v~~~-----~~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v 432 (772)
.+.|.|.|++|+||+++ +.. |.+||||++++. ..+.||++++++.||+|||.|.|.+.. ....|.|+|
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 14 LRELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred CCEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 37899999999999987 553 789999999983 234799999999999999999999874 346899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
||++.++ ++++||.+.|+|.++..++....||+|.
T Consensus 91 ~d~~~~~------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLG------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCC------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999865 8999999999999998777778999873
No 58
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.74 E-value=2.7e-17 Score=148.43 Aligned_cols=114 Identities=32% Similarity=0.486 Sum_probs=98.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCce
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDL 117 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~ 117 (772)
.|.|+|++|+||+..+..+.+||||++.+++ ++.+|++++++.||+|||+|.|.+.......|.|+|||++..+|++
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~ 80 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDH 80 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcc
Confidence 3789999999999988888999999999974 5789999999999999999999987655678999999998888999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 118 IGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
||++.+++.++..+. ....|++|.+.. . |+|.+.+.+
T Consensus 81 iG~~~~~l~~l~~g~-----~~~~~~~L~~~~----~-g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGE-----KVRVTFSLNPQG----K-EELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCC-----cEEEEEECCCCC----C-ceEEEEEEe
Confidence 999999999997653 367899998753 2 888888765
No 59
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.74 E-value=3e-17 Score=148.94 Aligned_cols=114 Identities=35% Similarity=0.582 Sum_probs=99.6
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC
Q 004127 40 QYLYVRVVKAKDLPGKDV------TGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV 113 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~------~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~ 113 (772)
|.|+|+|++|+||+..+. .|.+||||+++++++.++|++++++.||+|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998774 36899999999999999999999999999999999999766678999999999887
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEE
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVW 163 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 163 (772)
++++||.+.+++.++..+. ...+||+|.+.. . |+|.+.+.
T Consensus 81 ~~~~iG~~~i~l~~l~~~~-----~~~~w~~L~~~~----~-G~~~~~~~ 120 (121)
T cd08391 81 KDDFLGRLSIDLGSVEKKG-----FIDEWLPLEDVK----S-GRLHLKLE 120 (121)
T ss_pred CCCcEEEEEEEHHHhcccC-----ccceEEECcCCC----C-ceEEEEEe
Confidence 8999999999999997542 357999998642 2 88888764
No 60
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=3.4e-17 Score=151.11 Aligned_cols=122 Identities=34% Similarity=0.499 Sum_probs=103.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-------KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV 113 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~ 113 (772)
.|+|+|++|+||+..+..+.+||||++.+++. +.+|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 48999999999999998889999999999764 47999999999999999999998653 56899999999998
Q ss_pred -CCceeEEEEEEccccCCCCCCC-CCCCCeEEEeecCCCC-ceeeeEEEEEEEe
Q 004127 114 -LDDLIGRVMFDLNEVPKRIPPD-SPLAPQWYRLEDRKGD-KVKTGELMLAVWM 164 (772)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 164 (772)
++++||++.+++.++..+.+.+ .....+||+|++..+. +.. |+|.+++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVK-GHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcce-eEEEEEEee
Confidence 8999999999999998764432 3456799999976422 345 999999875
No 61
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.74 E-value=2.9e-17 Score=148.42 Aligned_cols=117 Identities=25% Similarity=0.457 Sum_probs=100.0
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGG 443 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~ 443 (772)
|.|.|++|++|+.+ +..|.+||||++.++++. .||++++++.||.|||.|.|.+.+....|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999988 667899999999998764 7999999999999999999999877789999999999875
Q ss_pred CCCCcccEEEEEecCccccC-ceEeeeEeeeecCCCCcccccEEEEEEE
Q 004127 444 GGKDSRIGKVRIRLSTLETD-RVYTHSYPLLVLHPSGVRKMGEVQLAVR 491 (772)
Q Consensus 444 ~~~~~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 491 (772)
+|++||++.+++.++..+ .....|++|.+....+ +..|+|++.+.
T Consensus 75 --~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 --RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred --CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 899999999999988753 3468999998754332 34699988875
No 62
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.74 E-value=1.9e-17 Score=147.35 Aligned_cols=102 Identities=30% Similarity=0.413 Sum_probs=87.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeeecCCCCCeeccEEEEEecc---CCCceEEEEEEec
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-------YKGTTKHFEKKSNPEWNQCFAFSKDR---IQASVLEVLVKDK 110 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------~~~kT~~~~~t~nP~Wne~f~f~v~~---~~~~~L~i~V~d~ 110 (772)
.|+|+|++|+||+..+ .|.+||||++++.+ ++.+|+++.+|.||+|||+|.|.+.. +....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999888 58999999999832 35689999999999999999999863 3446799999999
Q ss_pred CCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 111 DVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 111 ~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
+.. +|++||++.+++.++..++ ....|++|...
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAG-----SCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCC-----cEEEEEECcCc
Confidence 877 7999999999999998663 25789999764
No 63
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.74 E-value=1.9e-17 Score=148.76 Aligned_cols=114 Identities=20% Similarity=0.324 Sum_probs=96.9
Q ss_pred CCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeecCCCCCeeccEEEEEec--c
Q 004127 26 GDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN------YKGTTKHFEKKSNPEWNQCFAFSKD--R 97 (772)
Q Consensus 26 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~t~nP~Wne~f~f~v~--~ 97 (772)
.+.+++.|+. ..+.|.|+|++|+||++.+..+.+||||++++.+ .++||++++++.||+|||+|.|++. +
T Consensus 2 ~i~~sL~Y~~--~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~ 79 (124)
T cd08680 2 QVQIGLRYDS--GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTK 79 (124)
T ss_pred eEEEEEEECC--CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHH
Confidence 3567888875 4458999999999999988888999999999863 3679999999999999999999984 4
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
+....|.|.|||++.. ++++||.+.|+|.++.... .....||+|
T Consensus 80 L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~----~~~~~Wy~l 124 (124)
T cd08680 80 LYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSE----EMSTKWYNL 124 (124)
T ss_pred hhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCC----ccccccccC
Confidence 5678999999999988 8999999999999996542 235789876
No 64
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.73 E-value=7.6e-17 Score=146.60 Aligned_cols=118 Identities=22% Similarity=0.343 Sum_probs=97.7
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCc
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDD 116 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~ 116 (772)
...|+|+|++|+||+.. +.+||||++.+++. ..+|++. ++.||.|||+|.|.+.......+.|.|||.+.. +|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 45799999999999874 47899999999984 4789874 689999999999987654446799999999988 999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC--CceeeeEEEEEEEeee
Q 004127 117 LIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG--DKVKTGELMLAVWMGT 166 (772)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~~~ 166 (772)
+||.+.++|.++..+. ....||+|.+..+ .... |+|.++++|..
T Consensus 79 ~iG~v~i~l~~l~~~~-----~~~~W~~L~~~~~~~~~~~-G~i~l~l~~~~ 124 (126)
T cd08400 79 EIAEVTVQLSKLQNGQ-----ETDEWYPLSSASPLKGGEW-GSLRIRARYSH 124 (126)
T ss_pred eEEEEEEEHhHccCCC-----cccEeEEcccCCCCCCCcC-cEEEEEEEEEc
Confidence 9999999999987653 3578999987642 3344 99999998853
No 65
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.73 E-value=2.8e-17 Score=149.64 Aligned_cols=116 Identities=34% Similarity=0.459 Sum_probs=99.9
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEecc--C
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDR--I 98 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~--~ 98 (772)
.|.+.+++.|+... +.|.|+|++|+||+..+..+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+.. .
T Consensus 2 ~G~l~~~l~y~~~~--~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 79 (124)
T cd08385 2 LGKLQFSLDYDFQS--NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL 79 (124)
T ss_pred ccEEEEEEEEeCCC--CEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHh
Confidence 46788888888654 48999999999999998889999999999964 46799999999999999999999853 3
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
....|.|+|||++.+ ++++||++.++|.++..+ ....+|++|+
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~-----~~~~~W~~l~ 123 (124)
T cd08385 80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLG-----HVTEEWRDLE 123 (124)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCC-----CCcceEEEcc
Confidence 457899999999988 899999999999998654 2367999986
No 66
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.73 E-value=2.9e-17 Score=146.14 Aligned_cols=105 Identities=29% Similarity=0.420 Sum_probs=92.5
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccC----CCceEEEEEEecCCC
Q 004127 38 QMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI----QASVLEVLVKDKDVV 113 (772)
Q Consensus 38 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~----~~~~L~i~V~d~~~~ 113 (772)
+.+.|+|+|++|+||+ ++.+||||++++++++.+|++++++.||.|||+|.|.+..+ ....|.|+|||++..
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4578999999999998 47899999999999999999999999999999999997543 246899999999988
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 114 -LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
+|++||++.++|.++..+. ++.....|++|.++
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~--~~~~~~~w~~L~~~ 111 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQP--DHAFLRKWLLLTDP 111 (111)
T ss_pred ccCCccEEEEECCccccCCC--CCcceEEEEEeeCc
Confidence 8999999999999998653 45678899999763
No 67
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.73 E-value=3.6e-17 Score=147.64 Aligned_cols=112 Identities=25% Similarity=0.363 Sum_probs=97.6
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---CEEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHG 440 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~ 440 (772)
|.|+|++|++|+.. +..|.+||||++.++ +..+||++++++.||+|||+|.|.+..+ ...|.|+|||++.+
T Consensus 2 L~V~vi~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKG---DLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCcc---CCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 68999999999987 556889999999985 3568999999999999999999998764 56799999999874
Q ss_pred CCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
+|++||++.++++++..+.....|++|... ..|++++++.+
T Consensus 77 -----~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~ 117 (119)
T cd04036 77 -----MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLL 117 (119)
T ss_pred -----CCcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEe
Confidence 688999999999999999999999999642 24888888876
No 68
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.73 E-value=3.8e-17 Score=148.68 Aligned_cols=115 Identities=31% Similarity=0.496 Sum_probs=99.5
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEecc--CC
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDR--IQ 99 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~--~~ 99 (772)
|++.+++.|+. ..+.|.|+|++|+||+..+..|.+||||++++.. .+++|++++++.||+|||+|.|.+.. ..
T Consensus 3 G~l~~sl~y~~--~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 3 GELHFSLEYDK--DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CEEEEEEEECC--CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 56788888875 4579999999999999999889999999999952 56899999999999999999999853 33
Q ss_pred CceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 100 ASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 100 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
...|.|+|||++.+ ++++||++.++|.++..+. ....||+|.
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSE-----KLDLWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccCCC-----CcceEEECc
Confidence 56899999999988 8999999999999997653 357899985
No 69
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.73 E-value=4.3e-17 Score=148.45 Aligned_cols=118 Identities=26% Similarity=0.348 Sum_probs=97.8
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEE-ec--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVT-GSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFS-KD-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~-v~-- 96 (772)
.|.+.+++.|+... +.|.|+|++|+||+..+.. +.+||||++.+.+ ++.||++++++.||+|||+|.|. +.
T Consensus 2 ~G~l~~~l~y~~~~--~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 2 LGTLFFSLRYNSEK--KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CeEEEEEEEEECCC--CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 46788998888655 5999999999999998875 8999999999963 46799999999999999999994 42
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
+.....|.|+|||++.. +|++||++.++|.++..... .....|.+|+
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~---~~~~~~~~~~ 127 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNE---GELLVSREIQ 127 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCC---ceEEEEEecc
Confidence 33446799999999988 99999999999999965421 2256788875
No 70
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=1.3e-16 Score=145.19 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=100.7
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCcee
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLI 118 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~l 118 (772)
..+|+|+|++|++|...+..|.+||||++.+++++.+|++++++.||+|||.|.|.+.+. ...|.|+|||++..+|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLCDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCCCCce
Confidence 358999999999999999889999999999999999999999999999999999988764 6789999999988889999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCC---CCceeeeEEEEEEEee
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK---GDKVKTGELMLAVWMG 165 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~---~~~~~~G~l~l~~~~~ 165 (772)
|++.+++..+... ..+|++|.... ..... |+|.+++.+.
T Consensus 81 G~~~~~l~~~~~~-------~~~~~~l~~~~~~~~~~~~-G~i~~~~~~~ 122 (126)
T cd04046 81 GQATLSADPNDSQ-------TLRTLPLRKRGRDAAGEVP-GTISVKVTSS 122 (126)
T ss_pred EEEEEecccCCCc-------CceEEEcccCCCCCCCCCC-CEEEEEEEEc
Confidence 9999999875422 45888996432 22345 9999998664
No 71
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.72 E-value=4.2e-17 Score=147.72 Aligned_cols=116 Identities=25% Similarity=0.355 Sum_probs=99.2
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEE-ec--c
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFS-KD--R 97 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~-v~--~ 97 (772)
+|.+.+++.|+.... .|.|+|++|+||++.+..|.+||||++.+.+ ++.||+++++ .||+|||+|.|. +. +
T Consensus 2 ~G~l~~sl~Y~~~~~--~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 2 CGDLDVAFEYDPSAR--KLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred CEEEEEEEEECCCCC--EEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHH
Confidence 577899999986554 8999999999999999888999999988754 5789999887 999999999998 53 3
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
+....|.|+|||++.. ++++||++.++|.++.... ....|++|++
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~p 124 (124)
T cd08389 79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEG-----ETTVWLTLEP 124 (124)
T ss_pred hccCEEEEEEEECCCcccCceEEEEEEeccccCCCC-----CceEEEeCCC
Confidence 4567899999999988 8999999999999996542 3678999963
No 72
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.72 E-value=6.1e-17 Score=147.33 Aligned_cols=104 Identities=22% Similarity=0.410 Sum_probs=91.7
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---CEEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEEe
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVFD 434 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~D 434 (772)
..|.|.|+|++|+||+.+ +..|.+||||++.++ ...+||++++++.||+|||.|.|.+... ...|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 14 DMGILNVKLIQARNLQPR---DFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCC---CCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 348999999999999987 667889999999983 3468999999999999999999998753 5689999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
++.++ ++++||.+.++++++..+.....||+|.
T Consensus 91 ~~~~~------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 91 FDQFS------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCC------CCceeEEEEEecccccCCCCcceEEECc
Confidence 99865 8999999999999998777889999985
No 73
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.72 E-value=1.1e-16 Score=144.18 Aligned_cols=115 Identities=27% Similarity=0.405 Sum_probs=97.2
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 42 LYVRVVKAKDLPGKD-VTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 42 L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
|.|+|++|+||++.+ ..|.+||||++.++++ .++|+++++|.||.|||+|.|.+.+. ...|.|.|||.+.+ +|++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 689999999999874 4578999999999875 68999999999999999999999753 47899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCC-CceeeeEEEEEEE
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG-DKVKTGELMLAVW 163 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~ 163 (772)
|.+.++++++..+. ....||+|+.... .+.+ |+|.+++.
T Consensus 81 G~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~-G~i~l~~~ 120 (121)
T cd08401 81 GKVAIKKEDLHKYY-----GKDTWFPLQPVDADSEVQ-GKVHLELR 120 (121)
T ss_pred EEEEEEHHHccCCC-----CcEeeEEEEccCCCCccc-EEEEEEEE
Confidence 99999999997643 2578999987432 2234 99988864
No 74
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.72 E-value=5.1e-17 Score=148.29 Aligned_cols=114 Identities=38% Similarity=0.560 Sum_probs=95.7
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR-- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~-- 97 (772)
|...+++.|+. ..+.|.|+|++|+||+..+..+.+||||++++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 3 G~l~~~l~~~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 3 GRIQIQLWYDK--VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred EEEEEEEEEeC--CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 56677777775 4458999999999999998888999999999975 57899999999999999999998632
Q ss_pred -CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 98 -IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 98 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
+....|.|+|||++.. ++++||++.++|.+.... ....||+|+
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~------~~~~W~~L~ 125 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLD------DEPHWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccccc------CCcceEECc
Confidence 2457899999999988 899999999999983322 146899985
No 75
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=99.72 E-value=5.3e-17 Score=176.61 Aligned_cols=214 Identities=19% Similarity=0.323 Sum_probs=149.7
Q ss_pred CCCcccchhhhHHHHHHH-HHHHHHHHHHHHhhcccccccChhhHHHHHHHHHHHHHccchhHHHHHHHHHHHHh----h
Q 004127 556 VDSHMWSMRRSKANFFRI-MGVLSSLISVGKWFDQICNWKNPLTTILIHILFIILVLYPELILPTVFLYLFLIGI----W 630 (772)
Q Consensus 556 ~~~~~~s~~~l~~n~~rl-~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~~l~~~~~~~----~ 630 (772)
+++++||..+||+|++|| +.++-.+..+.++|.+|.+|++|++|++||++|++ +|+.++++|+++..++++++ +
T Consensus 83 a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~~r 161 (642)
T PF11696_consen 83 AEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSPPAR 161 (642)
T ss_pred cccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccc
Confidence 678999999999999999 55888999999999999999999999999888888 88889999999988777766 4
Q ss_pred ccccCCCCCCCCCccCC-----------------------cccc--------------------------CCCCCCCCCC
Q 004127 631 NFRWRPRHPPHMDTRLS-----------------------HAEA--------------------------AHPDELDEEF 661 (772)
Q Consensus 631 ~~~~~~~~~~~~~~~~s-----------------------~~~~--------------------------~~~~~~~~e~ 661 (772)
.++|++.+++.+++... .+|+ ..+++..++.
T Consensus 162 ~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~~~~~~ 241 (642)
T PF11696_consen 162 SILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDDDPEED 241 (642)
T ss_pred cccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCCccC
Confidence 56777655544442110 0110 0111111111
Q ss_pred -CCCC-------------------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccccCCch--------hH
Q 004127 662 -DTFP-------------------TTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPR--------AT 713 (772)
Q Consensus 662 -~~~~-------------------~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~--------~t 713 (772)
..++ .....+.-..--.++-+.+..+|+.|++++|.+||+-|.|+.+-|+ +.
T Consensus 242 ~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~RlRLa 321 (642)
T PF11696_consen 242 SEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRLRLA 321 (642)
T ss_pred CCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHHHHH
Confidence 0000 0000111011112244567889999999999999999999999998 34
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhcCCccC-------CCCCC-----chh-hhhhcCCCCcCC
Q 004127 714 TLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFR-------HKLPS-----VPL-NFFRRLPARSDS 770 (772)
Q Consensus 714 ~~~~~~l~~~~~~~~~iP~r~i~~~~g~~~~~~P~~r-------~~~p~-----~~~-~~~~r~Ps~~~~ 770 (772)
..++.+++++.++...+-.|.+-|+.|+.|++.|-++ +++|+ ++. -.|+.|||++.+
T Consensus 322 ~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Lnr~~P~W~k~leLrntlLkGVPTNAQL 391 (642)
T PF11696_consen 322 AILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLNRKYPNWQKLLELRNTLLKGVPTNAQL 391 (642)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCchHHH
Confidence 4556666666677777888888899999999998754 44555 222 268889998764
No 76
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.72 E-value=1.3e-16 Score=150.48 Aligned_cols=118 Identities=29% Similarity=0.444 Sum_probs=100.0
Q ss_pred eEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCe-eeeeeeecCCCCCeec
Q 004127 40 QYLYVRVVKAKDLPGKD------------------------------VTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWN 88 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~------------------------------~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wn 88 (772)
|.|.|+|++|++|+++| ..|.+||||++.+++. ..||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 78999999999999887 3567899999999985 4799999999999999
Q ss_pred cEEEEEeccCCCceEEEEEEecCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc--eeeeEEEEEEEe
Q 004127 89 QCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDK--VKTGELMLAVWM 164 (772)
Q Consensus 89 e~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~~G~l~l~~~~ 164 (772)
|+|.|.+... .+.|.|.|||.+.+++++||.+.+++.++..+. ....|++|.+..++. .. |.|.+++.|
T Consensus 87 E~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~-~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGE-----PVEGWLPILDSNGKPPKPG-AKIRVSLQF 157 (158)
T ss_pred eEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCC-----CcceEEECcCCCCCCCCCC-CEEEEEEEE
Confidence 9999998764 468999999999887899999999999997642 367999998765442 23 789888866
No 77
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.72 E-value=1.4e-16 Score=145.30 Aligned_cols=116 Identities=24% Similarity=0.391 Sum_probs=99.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN--YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
|.|+|++|+||+. ..|.+||||++.+++ ++.+|++++++.||+|||.|.|.+.. ....|.|+|||.+.. +|++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCceE
Confidence 6799999999988 578999999999984 57899999999999999999999864 367899999999998 89999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCCC--CceeeeEEEEEEEeee
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG--DKVKTGELMLAVWMGT 166 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~~~ 166 (772)
|++.+++.++..... ...|++|.+..+ .... |+|.+.+.|..
T Consensus 78 G~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~-G~l~l~~~~~~ 121 (126)
T cd08678 78 GLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVS-GSITVEFLFME 121 (126)
T ss_pred EEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcc-eEEEEEEEEec
Confidence 999999999986532 468999987643 3355 99999998854
No 78
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.72 E-value=1e-16 Score=146.10 Aligned_cols=121 Identities=26% Similarity=0.417 Sum_probs=98.5
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCC--
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQ-- 441 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~-- 441 (772)
.|+|+|++|++|+.. |..|.+||||+|.+++..++|+++.++.||.|||.|.|.+..+...|.|+|||+|....+
T Consensus 2 ~L~V~vi~a~~L~~~---d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAK---DKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCC---CCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 689999999999987 667889999999999999999999999999999999999987778899999999852100
Q ss_pred ---CCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEE
Q 004127 442 ---GGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAV 490 (772)
Q Consensus 442 ---~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 490 (772)
...+++++||.+.+++.++.... ..||+|......+ +..|+|.+++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCC-cEeEEEEEEC
Confidence 00237999999999999986544 7899998654222 2468888763
No 79
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=5.6e-17 Score=144.36 Aligned_cols=101 Identities=16% Similarity=0.256 Sum_probs=86.9
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-C----C--EEEEeecccCCCCCeecceEEEEeeCC----CcEEEEEE
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-G----Q--KWVRTRTIVDSFGPRWNEQYTWEVFDP----CTVITVGV 432 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-~----~--~~~~T~~~~~t~~P~Wne~~~~~v~~~----~~~l~i~v 432 (772)
.|+|.|++|+||+.. + .|.+||||+|++ | . +++||+++.+|+||+|||+|.|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~---d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQ---T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCcc---c-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 378999999999876 4 389999999997 3 2 347899999999999999999999742 35699999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
||++..+ ++++||++.++++++..++....|++|..
T Consensus 77 ~D~d~~~------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 77 KDYCFAR------DDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred EEecccC------CCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9998654 78999999999999998888899999964
No 80
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.71 E-value=5.1e-17 Score=145.72 Aligned_cols=111 Identities=26% Similarity=0.426 Sum_probs=91.4
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccC-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRI- 98 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~- 98 (772)
|+++++..| ..+.|.|+|++|+||++.+ .|.+||||++++.+ .+.||++++++.||+|||+|.|.+...
T Consensus 1 G~l~l~~~~----~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~ 75 (119)
T cd08685 1 GQLKLSIEG----QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERD 75 (119)
T ss_pred CEEEEEEEE----cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHH
Confidence 345566555 3468999999999999988 78999999999975 356899999999999999999998432
Q ss_pred CCceEEEEEEecCCC--CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 99 QASVLEVLVKDKDVV--LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
....|.|+|||++.. ++++||.+.|+|.++..+ ....+||.|
T Consensus 76 ~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~-----~~~~~Wy~l 119 (119)
T cd08685 76 YQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQ-----KEISGWYYL 119 (119)
T ss_pred hCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccC-----ccccceEeC
Confidence 235789999999876 478999999999999754 235789986
No 81
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.71 E-value=1e-16 Score=146.64 Aligned_cols=116 Identities=29% Similarity=0.450 Sum_probs=99.1
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
.|++.+++.|+. ..+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|++++++.||+|||+|.|.+.
T Consensus 2 ~G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~ 79 (127)
T cd04030 2 LGRIQLTIRYSS--QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLE 79 (127)
T ss_pred CeEEEEEEEEeC--CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHH
Confidence 367888888885 4569999999999999999889999999999963 5789999999999999999999984
Q ss_pred cCCCceEEEEEEecCCC---CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 97 RIQASVLEVLVKDKDVV---LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
++....|.|.|||.+.. ++++||++.++|.++..+. ....||+|+
T Consensus 80 ~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~ 127 (127)
T cd04030 80 ELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSK-----GFTQWYDLT 127 (127)
T ss_pred HhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccC-----CccceEECc
Confidence 33457899999999873 7999999999999986542 357899984
No 82
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.71 E-value=7.8e-17 Score=149.31 Aligned_cols=103 Identities=29% Similarity=0.426 Sum_probs=88.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec---------------cCCC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD---------------RIQA 100 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~---------------~~~~ 100 (772)
.|.|+|++|+||+. .+|.+||||++++.+ ++.+|+++++|.||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 468999999999987 5789999999999999999999984 2234
Q ss_pred ceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 101 SVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 101 ~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
..|.|.|||++.. +|++||++.|++..+.... .....||+|.+..
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~----~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQA----GSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccC----CcCcceeecCCcc
Confidence 6799999999988 9999999999999987651 2357899998764
No 83
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.71 E-value=1.1e-16 Score=145.26 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=87.3
Q ss_pred ccEEEEEEEEecCCCCCccCCC-CCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDG-RGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~-~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v 432 (772)
.+.|.|.|++|+||+++ +. .|.+||||++.+.+ .+.||++++++.||+|||+|.|.+.. ....|.|.|
T Consensus 14 ~~~L~V~V~~a~nL~~~---d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 14 TSCLEITIKACRNLAYG---DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred CCEEEEEEEecCCCCcc---CCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 37999999999999987 54 48899999999842 36799999999999999999999865 256899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCcccc---CceEeeeEee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLET---DRVYTHSYPL 472 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~---~~~~~~~~~L 472 (772)
||++.++ ++++||.+.|+|.++.. +....+||+|
T Consensus 91 ~~~~~~~------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 91 WHSRTLK------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EeCCCCc------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999765 88999999999999854 3466799987
No 84
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.71 E-value=1.2e-16 Score=144.02 Aligned_cols=118 Identities=25% Similarity=0.446 Sum_probs=100.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCccEEEEEECCeeeeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCCCCCcee
Q 004127 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVL 282 (772)
Q Consensus 203 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~i 282 (772)
+|.|+|++|++|+.. .+||||++.++++..+|+++++ +.||.|||+|.|.+..+....|.|+|||++.. ++++|
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~l 74 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFL 74 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCcee
Confidence 489999999999887 6899999999999999999987 99999999999998776678899999999876 78999
Q ss_pred EEEEEeccccccccC-CCCCCceeEEcccCccccCccccccccceEEEEEEE
Q 004127 283 GKCLIPLQAVQRRLD-HKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICL 333 (772)
Q Consensus 283 G~~~i~l~~l~~~~~-~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~ 333 (772)
|++.++++++..+.. ++....+||+|.... ..+..|+|++.+.+
T Consensus 75 G~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~-------~~~~~G~i~l~~~~ 119 (121)
T cd08378 75 GGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK-------GGRVGGELMLAVWF 119 (121)
T ss_pred eeEEEEhHhCcCCCCCCCCCCcceEEccCCC-------CCccceEEEEEEEe
Confidence 999999999865322 234567999998752 23568999998876
No 85
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.71 E-value=1.3e-16 Score=145.55 Aligned_cols=115 Identities=36% Similarity=0.521 Sum_probs=98.6
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeecCCCCCeeccEEEEEec---cC
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLG---NYKGTTKHFEKKSNPEWNQCFAFSKD---RI 98 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~---~~ 98 (772)
|.+.+++.|+... +.|.|+|++|+||+..+..+.+||||++.+. +++.+|++++++.||+|||+|.|.+. .+
T Consensus 3 G~l~~~l~y~~~~--~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 3 GRIQFSVSYDFQE--STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred cEEEEEEEECCCC--CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 6788888887544 5899999999999999888999999999994 36789999999999999999999742 23
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEee
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLE 146 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 146 (772)
....|.++|||++.. ++++||++.+++.++.... ....|++|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~l~ 124 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTE-----EQTFWKDLK 124 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCC-----CcceEEecC
Confidence 456899999999988 8999999999999997542 367899985
No 86
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.71 E-value=2.3e-16 Score=142.51 Aligned_cols=116 Identities=32% Similarity=0.510 Sum_probs=98.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCceeE
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLIG 119 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~lG 119 (772)
|.|+|++|+||++.+..|.+||||++.+++. ..+|++++++.||.|||.|.|.+... ...|.|+|||++.. +|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence 7899999999999999999999999999885 47999999999999999999998653 47899999999988 999999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCC-CCceeeeEEEEEEE
Q 004127 120 RVMFDLNEVPKRIPPDSPLAPQWYRLEDRK-GDKVKTGELMLAVW 163 (772)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~-~~~~~~G~l~l~~~ 163 (772)
++.+++.++.... .....|++|.+.. +.... |+|.+.+.
T Consensus 81 ~~~~~~~~~~~~~----~~~~~W~~L~~~~~~~~~~-G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHP----RGIDGWMNLTEVDPDEEVQ-GEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCC----CCCCcEEECeeeCCCCccc-cEEEEEEE
Confidence 9999998886431 2256899998643 22344 99988764
No 87
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.71 E-value=9.6e-17 Score=143.92 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=87.1
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeC--CCcEEEEEEEeC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFD--PCTVITVGVFDN 435 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~--~~~~l~i~v~D~ 435 (772)
+.|.|+|++|+||+++ + .|.+||||++.+.+ .+.||++++++.||+|||+|.|.+.. ....|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 6899999999999987 5 57899999999953 35799999999999999999999875 345799999998
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEee
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 472 (772)
+..+ .++++||.+.|++.++..+.....||.|
T Consensus 88 ~~~~-----~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS-----RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc-----CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8642 1478999999999999888878999976
No 88
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=1.1e-16 Score=145.95 Aligned_cols=121 Identities=28% Similarity=0.369 Sum_probs=100.1
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC--EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCC
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ--KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIH 439 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~--~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~ 439 (772)
+|.|+|+|++|+||+..+ ...+.+||||++++++ ..+||+++.++.||.|||.|.|.+....+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCccc--ccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 378999999999998642 2346799999999987 789999999999999999999999866889999999998764
Q ss_pred CCCCCCCCcccEEEEEecCccccCceEee-eEeeeecCCCCcccccEEEEEEEEee
Q 004127 440 GQGGGGKDSRIGKVRIRLSTLETDRVYTH-SYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 440 ~~~~~~~~~~lG~~~i~l~~l~~~~~~~~-~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
+|++||++.+++.++..+..... ++++.. +.+..|+|+++++|.|
T Consensus 79 ------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~----~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 ------KDKLIGTAEFDLSSLLQNPEQENLTKNLLR----NGKPVGELNYDLRFFP 124 (124)
T ss_pred ------CCceeEEEEEEHHHhccCccccCcchhhhc----CCccceEEEEEEEeCC
Confidence 89999999999999987765543 444431 2335699999999854
No 89
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.70 E-value=2.6e-16 Score=143.54 Aligned_cols=113 Identities=34% Similarity=0.583 Sum_probs=97.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-------
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV------- 113 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~------- 113 (772)
.|+|+|++|++|+..+..|.+||||+++++++..+|+++.++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 6899999999999999889999999999999899999999999999999999998654 56899999999841
Q ss_pred -----CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEE
Q 004127 114 -----LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAV 162 (772)
Q Consensus 114 -----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~ 162 (772)
++++||.+.+++.++... ...||+|++..+. ..+ |+|.+++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~-------~~~w~~L~~~~~~~~~~-G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE-------MDVWYNLEKRTDKSAVS-GAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC-------CCeEEECccCCCCCcEe-EEEEEEC
Confidence 689999999999987422 4699999976644 366 9998864
No 90
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.70 E-value=5.8e-17 Score=143.83 Aligned_cols=101 Identities=29% Similarity=0.452 Sum_probs=89.4
Q ss_pred EEEEEEEecCCCCCccCC-CCCCcCcEEEEEECCEEEEeecccCCCCCee-cceEEEEeeCC---CcEEEEEEEeCCcCC
Q 004127 365 LELGVLSAHGLTPMKTKD-GRGTTDAYCVAKYGQKWVRTRTIVDSFGPRW-NEQYTWEVFDP---CTVITVGVFDNGHIH 439 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~W-ne~~~~~v~~~---~~~l~i~v~D~~~~~ 439 (772)
|.|+|++|+||+.+ + ..|.+||||++.+++..+||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVM---DRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCcc---ccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 57899999999987 4 3578999999999999999999999999999 99999999863 468999999999865
Q ss_pred CCCCCCCCcccEEEEEecCcccc---CceEeeeEeeee
Q 004127 440 GQGGGGKDSRIGKVRIRLSTLET---DRVYTHSYPLLV 474 (772)
Q Consensus 440 ~~~~~~~~~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 474 (772)
++++||++.+++.++.. +.....||+|.+
T Consensus 78 ------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 ------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 88999999999999976 456789999864
No 91
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.70 E-value=1.1e-16 Score=140.64 Aligned_cols=96 Identities=19% Similarity=0.328 Sum_probs=83.2
Q ss_pred cEEEEEEEEecCCCCCccCC-CCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC--CcEEEEEEEeCCcCC
Q 004127 363 GILELGVLSAHGLTPMKTKD-GRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP--CTVITVGVFDNGHIH 439 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~--~~~l~i~v~D~~~~~ 439 (772)
|.|.|+|++|+||+..+... .++.+||||+|++++..+||++++++.||+|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 68999999999999874321 224689999999999999999999999999999999998753 457999999999865
Q ss_pred CCCCCCCCcccEEEEEecCccccCc
Q 004127 440 GQGGGGKDSRIGKVRIRLSTLETDR 464 (772)
Q Consensus 440 ~~~~~~~~~~lG~~~i~l~~l~~~~ 464 (772)
+|++||++.++|++|..+.
T Consensus 81 ------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 ------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ------CCcceEEEEEEHHHHHhhC
Confidence 8999999999999997653
No 92
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.4e-16 Score=140.86 Aligned_cols=99 Identities=20% Similarity=0.212 Sum_probs=86.7
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
+.|.|.|++|++|+.. +..||||+|++|+++.+|++++++ ||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~------~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~---- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAP------DKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI---- 70 (127)
T ss_pred ceEEEEEEEeeCCCCC------CCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc----
Confidence 6899999999999753 346999999999999999999884 99999999999988888899999998864
Q ss_pred CCCCCcccEEEEEecCccccCceE--eeeEeeeec
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVY--THSYPLLVL 475 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 475 (772)
+|++||++.|+|.++..+... ..||+|...
T Consensus 71 ---~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 ---WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred ---CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 899999999999999755433 789999753
No 93
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.70 E-value=1.6e-16 Score=144.47 Aligned_cols=114 Identities=22% Similarity=0.354 Sum_probs=96.8
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKD-VTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~- 97 (772)
|++.+++.|+.. .+.|.|+|++|+||+..+ ..+.+||||++.+.+ .+.+|++++++.||+|||+|.|.+..
T Consensus 1 G~i~~~l~y~~~--~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~ 78 (123)
T cd08521 1 GEIEFSLSYNYK--TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS 78 (123)
T ss_pred CeEEEEEEEeCC--CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH
Confidence 567888888754 459999999999999888 778999999999853 46799999999999999999999854
Q ss_pred -CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 98 -IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 98 -~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
+....|.|+|||++.. ++++||++.++|.++..+. ....||+|
T Consensus 79 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~-----~~~~w~~l 123 (123)
T cd08521 79 QLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDS-----QQSEWYPL 123 (123)
T ss_pred HhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccC-----CCccEEEC
Confidence 3357899999999988 8999999999999996442 25789987
No 94
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.70 E-value=2.4e-16 Score=143.46 Aligned_cols=103 Identities=27% Similarity=0.374 Sum_probs=90.6
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC---EEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEEeC
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVFDN 435 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~D~ 435 (772)
.+.|.|+|++|+||+.+ +..|.+||||++.+.+ ..+||++++++.||+|||.|.|.+... ...|.|+|||+
T Consensus 15 ~~~L~V~v~~a~~L~~~---d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 15 SNQLTVGIIQAADLPAM---DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 37899999999999987 6668899999998842 468999999999999999999998752 46899999999
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
+.++ ++++||++.++++++..+....+|++|.
T Consensus 92 d~~~------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DRFS------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCC------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9865 8899999999999998888889999874
No 95
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.70 E-value=1.5e-16 Score=139.96 Aligned_cols=98 Identities=20% Similarity=0.318 Sum_probs=88.1
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHGQGG 443 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~~~~ 443 (772)
|.|.|++|+||+.. +..+.+||||+++++++.+||++++++.||+|||.|.|.+.++ .+.|.|+|+|++
T Consensus 2 L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~------- 71 (105)
T cd04050 2 LFVYLDSAKNLPLA---KSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDK------- 71 (105)
T ss_pred EEEEEeeecCCCCc---ccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECC-------
Confidence 78999999999987 6678999999999999999999999999999999999999985 678999999976
Q ss_pred CCCCcccEEEEEecCccccC--ceEeeeEeeee
Q 004127 444 GGKDSRIGKVRIRLSTLETD--RVYTHSYPLLV 474 (772)
Q Consensus 444 ~~~~~~lG~~~i~l~~l~~~--~~~~~~~~L~~ 474 (772)
.+++||++.++|.++..+ .....||+|.+
T Consensus 72 --~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 72 --TGKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred --CCCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 368999999999998654 46789999975
No 96
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.70 E-value=3.6e-16 Score=141.73 Aligned_cols=114 Identities=21% Similarity=0.335 Sum_probs=97.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-C--Cce
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLG-NYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-L--DDL 117 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~--d~~ 117 (772)
|+|+|++|+||+..+..+.+||||++.++ .+.++|++++++.||.|||+|.|.+.. ...|.|+|||++.. + |++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999988999999999997 578999999999999999999999975 68999999999887 3 589
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCC---CceeeeEEEEEE
Q 004127 118 IGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG---DKVKTGELMLAV 162 (772)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~---~~~~~G~l~l~~ 162 (772)
||++.+++.++.... .....|++|..... .... |+|.+++
T Consensus 80 lG~~~i~l~~l~~~~----~~~~~~~~l~~~~~~~~~~~~-G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLK----DTGYQRLDLRKLKKSDNLSVR-GKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccC----CCccceeEeecCCCCCCceEe-eEEEEEe
Confidence 999999999997543 12467999976652 3355 9988875
No 97
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.69 E-value=1.1e-16 Score=148.27 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=93.7
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEee---------------C
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVF---------------D 423 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~---------------~ 423 (772)
.|.|+|++|+||+. ..|.+||||+|.+.+ ...||+++++|.||+|||.|.|.+. +
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 37899999999986 247899999999965 5689999999999999999999995 1
Q ss_pred -CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccC-ceEeeeEeeeecCCCC---------cccccEEEEEE
Q 004127 424 -PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETD-RVYTHSYPLLVLHPSG---------VRKMGEVQLAV 490 (772)
Q Consensus 424 -~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g---------~~~~G~i~l~~ 490 (772)
....|.|+|||++..+ +|++||++.|++.++..+ .....||+|.....+. ....|.++|++
T Consensus 76 ~~~~~L~i~V~d~~~~~------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 76 AEKLELRVDLWHASMGG------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred ccEEEEEEEEEcCCCCC------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 1257999999998754 899999999999999876 5678999996653222 12457777664
No 98
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.69 E-value=2e-16 Score=139.14 Aligned_cols=93 Identities=20% Similarity=0.276 Sum_probs=82.4
Q ss_pred eEEEEEEEEeecCCCCCC----CCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccC-CCceEEEEEEecCCC-
Q 004127 40 QYLYVRVVKAKDLPGKDV----TGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI-QASVLEVLVKDKDVV- 113 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~~L~i~V~d~~~~- 113 (772)
|+|.|+|++|+||+..+. .+.+||||++.+++++.||++++++.||+|||.|.|.+.+. ....|.|+|||++..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 689999999999998763 23589999999999999999999999999999999998543 245899999999988
Q ss_pred CCceeEEEEEEccccCCCC
Q 004127 114 LDDLIGRVMFDLNEVPKRI 132 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~ 132 (772)
+|++||++.++|.++..+.
T Consensus 81 ~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCcceEEEEEEHHHHHhhC
Confidence 9999999999999998764
No 99
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.69 E-value=1.7e-16 Score=140.87 Aligned_cols=104 Identities=37% Similarity=0.556 Sum_probs=90.8
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeeecCCCCCee-ccEEEEEeccC--CCceEEEEEEecCCC-CCc
Q 004127 42 LYVRVVKAKDLPGKDV-TGSCDPYVEVKLGNYKGTTKHFEKKSNPEW-NQCFAFSKDRI--QASVLEVLVKDKDVV-LDD 116 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~W-ne~f~f~v~~~--~~~~L~i~V~d~~~~-~d~ 116 (772)
|.|+|++|+||+..+. .+.+||||+++++++++||++++++.||.| ||+|.|.+... ....|.|+|||++.. +++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999998874 688999999999999999999999999999 99999998642 357899999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 117 LIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
+||++.+++.++.... +......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD--SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence 9999999999998742 1234788999975
No 100
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.69 E-value=4.3e-16 Score=142.74 Aligned_cols=123 Identities=21% Similarity=0.412 Sum_probs=103.1
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQ 441 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~ 441 (772)
..|.|.|++|++|+.+ .+|||.|.+++.. .||+++.++.||.|+|.|.|.+..+...+.|.||+.+...
T Consensus 11 ~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~-- 80 (146)
T cd04013 11 NSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK-- 80 (146)
T ss_pred EEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc--
Confidence 5899999999999875 3799999999988 5999999999999999999987777788999998655321
Q ss_pred CCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCC-------cccccEEEEEEEEeec
Q 004127 442 GGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSG-------VRKMGEVQLAVRFTCS 495 (772)
Q Consensus 442 ~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~f~~~ 495 (772)
.+..++++||++.|++.++..+...+.||||.+..... .+..+.|+++++|.+.
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 01236899999999999999999999999999876443 2345799999999764
No 101
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.69 E-value=6.1e-16 Score=142.31 Aligned_cols=116 Identities=24% Similarity=0.401 Sum_probs=98.9
Q ss_pred eeEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCee-eeeeeecCCCCCeeccEEEEEeccCCCceEEEEE
Q 004127 39 MQYLYVRVVKAKDLPGKDVT----------GSCDPYVEVKLGNYK-GTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLV 107 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~----------~~~dpyv~v~~~~~~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V 107 (772)
.|.|+|+|++|+||...+.. +.+||||++.+++++ .+|++++++.||.|||+|.|.+.+ ...|.|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEE
Confidence 37899999999999988752 689999999999854 799999999999999999999974 57899999
Q ss_pred EecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 108 KDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 108 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
||.+.. ++++||.+.++|.++..+. ......|++|+.. |+|.+.+.+..
T Consensus 81 ~d~~~~~~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~~-------G~l~l~~~~~~ 130 (132)
T cd04014 81 FHDAAIGPDDFVANCTISFEDLIQRG---SGSFDLWVDLEPQ-------GKLHVKIELKG 130 (132)
T ss_pred EeCCCCCCCceEEEEEEEhHHhcccC---CCcccEEEEccCC-------cEEEEEEEEec
Confidence 999887 8999999999999988631 1236799999742 99999987753
No 102
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.69 E-value=3.1e-16 Score=143.52 Aligned_cols=105 Identities=22% Similarity=0.287 Sum_probs=90.5
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVF 433 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~ 433 (772)
.+.|.|.|++|+||+.. +..+.+||||+|.+. ...+||++++++.||+|||+|.|.+... ...|.|.||
T Consensus 15 ~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 15 RQKLIVTVHKCRNLPPC---DSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred CCEEEEEEEEEECCCCc---cCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 47999999999999987 667899999999984 3568999999999999999999998642 468999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
|++.+. .+++++||.+.+++.++..+.....||+|.
T Consensus 92 ~~~~~~----~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 92 NSKSFL----SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECCccc----CCCCceEEEEEEecccccccCCccceEECc
Confidence 998641 128999999999999998877789999873
No 103
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=3.9e-16 Score=142.63 Aligned_cols=115 Identities=21% Similarity=0.369 Sum_probs=99.7
Q ss_pred EEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEEeCCcCCCCCCCC
Q 004127 369 VLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVFDNGHIHGQGGGG 445 (772)
Q Consensus 369 v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~D~~~~~~~~~~~ 445 (772)
|++|+||+. ..|.+||||+|.+++..+||++++++.||+|||.|.|++..+ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 678999985 357899999999999999999999999999999999999753 678999999999865
Q ss_pred CCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEeecc
Q 004127 446 KDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCSS 496 (772)
Q Consensus 446 ~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 496 (772)
+|++||++.++++++..+.....|++|.... +....|+|+++++|.|..
T Consensus 71 ~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 71 RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPPD 119 (127)
T ss_pred CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCCC
Confidence 8899999999999999888889999997643 232358999999997653
No 104
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=5.1e-16 Score=141.84 Aligned_cols=114 Identities=29% Similarity=0.414 Sum_probs=100.1
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccC--CCceEEEEEEecCCC-CCceeEEEE
Q 004127 46 VVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI--QASVLEVLVKDKDVV-LDDLIGRVM 122 (772)
Q Consensus 46 v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~~L~i~V~d~~~~-~d~~lG~~~ 122 (772)
|++|+||+. ..|.+||||++++++.+++|++++++.||+|||+|.|.+... ....|.|+|||++.. +|++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 789999998 578999999999999999999999999999999999999653 468999999999988 899999999
Q ss_pred EEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeec
Q 004127 123 FDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQ 167 (772)
Q Consensus 123 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 167 (772)
+++.++..+. ....|++|.+.++.... |+|.+.++|.+.
T Consensus 80 ~~l~~l~~~~-----~~~~~~~L~~~~~~~~~-~~l~l~~~~~~~ 118 (127)
T cd08373 80 VSLQDLVSEG-----LLEVTEPLLDSNGRPTG-ATISLEVSYQPP 118 (127)
T ss_pred EEhhHcccCC-----ceEEEEeCcCCCCCccc-EEEEEEEEEeCC
Confidence 9999998653 35789999877666566 999999998754
No 105
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.69 E-value=3.1e-16 Score=143.05 Aligned_cols=102 Identities=25% Similarity=0.363 Sum_probs=85.9
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeC----CCcEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFD----PCTVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~----~~~~l~i~v 432 (772)
.+.|.|+|++|+||+.+ +..+.+||||+|.+.+ ..+||++++++.||+|||.|.|.+.. ....|.|+|
T Consensus 15 ~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 15 TSQLIVTVLQARDLPPR---DDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred CCEEEEEEEEecCCCCc---CCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 37899999999999987 5668899999999854 46899999999999999999998754 357899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
||++..+ ++++||++.++|++... ....+||+|.
T Consensus 92 ~d~~~~~------~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 92 WDYDRDG------ENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred EeCCCCC------CCcEeeEEEEecccccc-cCCcceEECc
Confidence 9999764 88999999999998422 2236899873
No 106
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.69 E-value=3.3e-16 Score=141.90 Aligned_cols=118 Identities=25% Similarity=0.347 Sum_probs=95.1
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-CEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-QKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGG 443 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~ 443 (772)
|+|+|++|++|+.+ +..|.+||||++.++ .+.+||++++++.||.|||.|.|.+.. .+.|.|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~---- 73 (123)
T cd08382 2 VRLTVLCADGLAKR---DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK---- 73 (123)
T ss_pred eEEEEEEecCCCcc---CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC----
Confidence 78999999999887 667899999999996 667999999999999999999999965 789999999998864
Q ss_pred CCCCcccEEEEEecCccccCc-eEeeeEeeeecCCCCc-ccccEEEEEE
Q 004127 444 GGKDSRIGKVRIRLSTLETDR-VYTHSYPLLVLHPSGV-RKMGEVQLAV 490 (772)
Q Consensus 444 ~~~~~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~g~-~~~G~i~l~~ 490 (772)
.+.|++||++.+++.++.... ....|++|........ .-.|+|.+++
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 113689999999999986443 3367999966543221 2257777654
No 107
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.69 E-value=1.9e-16 Score=144.30 Aligned_cols=118 Identities=25% Similarity=0.340 Sum_probs=100.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeec-CCCCCeeccEEEEEeccCC----CceEEEEEEecCCC-
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFE-KKSNPEWNQCFAFSKDRIQ----ASVLEVLVKDKDVV- 113 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~-~t~nP~Wne~f~f~v~~~~----~~~L~i~V~d~~~~- 113 (772)
.|+|+|++|++|+..+..+.+||||++++++ ++.+|+++. ++.||.|||.|.|.+.+.. ...|.|+|||++..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999988889999999999998 889999985 5899999999999997653 68899999999987
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEE
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELML 160 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l 160 (772)
+|++||++.+++.++..+...+......||+|..++|+. + |.|.+
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~-~-G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP-Q-GVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCc-C-eEEeC
Confidence 899999999999999877543334567899999876543 3 88763
No 108
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.69 E-value=2.3e-16 Score=149.42 Aligned_cols=119 Identities=28% Similarity=0.367 Sum_probs=99.1
Q ss_pred cCCcceeeecCcC----------ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeeecCCCCCeecc
Q 004127 25 TGDKLSCTYDLVE----------QMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLG-----NYKGTTKHFEKKSNPEWNQ 89 (772)
Q Consensus 25 ~~~~~~~~~~~~~----------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~kT~~~~~t~nP~Wne 89 (772)
|++.+++.|.... ..|.|.|+|++|+||+..+..+.+||||++++. .+++||++++++.||.|||
T Consensus 2 G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE 81 (162)
T cd04020 2 GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNH 81 (162)
T ss_pred ceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCC
Confidence 5667777777633 568999999999999999988999999999984 2578999999999999999
Q ss_pred EEEEEec---cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 90 CFAFSKD---RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 90 ~f~f~v~---~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
+|.|.+. +.....|.|+|||++.+ ++++||++.+++.++.... ....|++|.+.
T Consensus 82 ~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~-----~~~~w~~~~~~ 139 (162)
T cd04020 82 TFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYG-----QAVDWMDSTGE 139 (162)
T ss_pred EEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCC-----CccccccCChH
Confidence 9999852 33456899999999988 8999999999999987543 24678887643
No 109
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.68 E-value=5.6e-16 Score=142.58 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=99.2
Q ss_pred cEEEEEEEEecCCCCCccCC-------CCCCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCCcEEEEEEEe
Q 004127 363 GILELGVLSAHGLTPMKTKD-------GRGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFD 434 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~-------~~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D 434 (772)
|.|+|.|++|+||...+... ..|.+||||++.++++. .+|++++++.||.|||+|.|.+. ....|.|.|||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~d 82 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVFH 82 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEEe
Confidence 78999999999998763210 13679999999998876 69999999999999999999996 45789999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCcccc--CceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLET--DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
++.++ ++++||++.++|+++.. +.....|++|. ..|+|++++.+..
T Consensus 83 ~~~~~------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 83 DAAIG------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred CCCCC------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 98764 78999999999999976 56679999996 2499999998754
No 110
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.68 E-value=4.1e-16 Score=141.82 Aligned_cols=116 Identities=31% Similarity=0.445 Sum_probs=98.0
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEecc--C
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKD-VTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDR--I 98 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~--~ 98 (772)
|++.+++.|+... +.|.|+|++|+||+..+ ..+.+||||++++.+ +..+|++++++.||+|||+|.|.+.. .
T Consensus 1 G~l~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l 78 (123)
T cd08390 1 GRLWFSVQYDLEE--EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKEL 78 (123)
T ss_pred CEEEEEEEECCCC--CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence 5677888888654 58999999999999988 678999999999853 56799999999999999999999854 2
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
....|.|+|||++.. ++++||++.++|.++.... ....|++|++
T Consensus 79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~-----~~~~w~~L~~ 123 (123)
T cd08390 79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVK-----GGVVWRDLEP 123 (123)
T ss_pred cccEEEEEEEECCcCCCCcEEEEEEEeccceecCC-----CceEEEeCCC
Confidence 346899999999988 8999999999999997653 2468999863
No 111
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.68 E-value=8.5e-17 Score=147.28 Aligned_cols=118 Identities=25% Similarity=0.259 Sum_probs=96.2
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
.|++.+++.|+-.. ..|.|+|++|+||+..+..|.+||||++++.+ .+.||++++++.||+|||+|.|.+.
T Consensus 1 ~G~i~~sL~Y~~~~--~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~ 78 (136)
T cd08406 1 VGEILLSLSYLPTA--ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI 78 (136)
T ss_pred CcEEEEEEEEcCCC--CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH
Confidence 37788999988654 48999999999999999889999999999954 2568999999999999999999984
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG 150 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (772)
++.+..|.|+|||++.. ++++||++.+..... + +...+|..+....+
T Consensus 79 ~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~--g-----~~~~hW~~ml~~~~ 126 (136)
T cd08406 79 VLQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS--G-----MGLSHWNQMLASLR 126 (136)
T ss_pred HhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC--C-----hhHHHHHHHHHCCC
Confidence 35578899999999988 999999999976532 2 12456766655443
No 112
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.68 E-value=4.1e-16 Score=142.02 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=86.6
Q ss_pred ccEEEEEEEEecCCCCCccCCCC-CCcCcEEEEEEC---CEEEEeecccCCCCCeecceEEEE-eeC---CCcEEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGR-GTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWE-VFD---PCTVITVGVF 433 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~-g~~dpyv~v~~~---~~~~~T~~~~~t~~P~Wne~~~~~-v~~---~~~~l~i~v~ 433 (772)
.+.|.|+|++|+||+.. +.. |.+||||++.+. .+..||++++++.||+|||+|.|. +.. ....|.|+||
T Consensus 15 ~~~L~V~Vi~a~~L~~~---~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 15 KKALLVNIIECRDLPAM---DEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred CCEEEEEEEEeECCCCC---CCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 37999999999999987 554 889999999884 346799999999999999999994 331 2457999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCcccc--CceEeeeEeee
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLET--DRVYTHSYPLL 473 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~--~~~~~~~~~L~ 473 (772)
|++.++ ++++||++.++|+++.- ++....|.+|.
T Consensus 92 d~d~~~------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRYS------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCCC------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 999865 89999999999999954 46788998875
No 113
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.68 E-value=1.7e-16 Score=141.04 Aligned_cols=100 Identities=30% Similarity=0.459 Sum_probs=87.0
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEeccC---CCceEEEEEEecCC
Q 004127 40 QYLYVRVVKAKDLPGKDVT-GSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDRI---QASVLEVLVKDKDV 112 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~~L~i~V~d~~~ 112 (772)
|.|+|+|++|+||+..+.. +.+||||++++.+ ...+|++++++.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999887 8999999999954 468999999999999999999987543 35789999999999
Q ss_pred C-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 113 V-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
. +|++||++.+++.++... ..|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~--------~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED--------RNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC--------CCCCcccc
Confidence 8 899999999999999732 46777753
No 114
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.68 E-value=9.7e-16 Score=139.95 Aligned_cols=118 Identities=26% Similarity=0.413 Sum_probs=99.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCc
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDD 116 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~ 116 (772)
.|.|+|++|+||+..+..+.+||||++.+++ ...+|++++++.||.|||+|.|.+.......|.|+|||.+.. +++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 6899999999999999889999999999875 367999999999999999999999775568899999999988 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeec
Q 004127 117 LIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQ 167 (772)
Q Consensus 117 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 167 (772)
+||++.++|.++.... +......|++|.+. |+|.+.+.+...
T Consensus 82 ~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~~-------g~i~l~~~~~~~ 123 (126)
T cd04043 82 LCGRASLKLDPKRFGD--DGLPREIWLDLDTQ-------GRLLLRVSMEGE 123 (126)
T ss_pred eEEEEEEecCHHHcCC--CCCCceEEEEcCCC-------CeEEEEEEEeee
Confidence 9999999998764331 12335689999752 889888887643
No 115
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=8.1e-16 Score=141.89 Aligned_cols=118 Identities=19% Similarity=0.347 Sum_probs=97.1
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC----------CcEEEEEEE
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP----------CTVITVGVF 433 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~----------~~~l~i~v~ 433 (772)
.|+|+|++|++|+.+ |..|.+||||+|.+++...||+++++|.||.|||.|.|.+... ...|.|+||
T Consensus 2 ~l~v~V~~a~~L~~~---d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAA---DKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCC---CCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999987 6678999999999999999999999999999999999986431 257999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEE-ecCccc---cCceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRI-RLSTLE---TDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i-~l~~l~---~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
|++..+ +|++||++.+ ++..+. .+.....|++|... | ...|+|.+++.+.+
T Consensus 79 d~d~~~------~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~---~-~~~Geil~~~~~~~ 133 (135)
T cd04017 79 DQDSVG------KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG---G-QSAGELLAAFELIE 133 (135)
T ss_pred eCcCCC------CCccceEEEeeeeeecccCCCCCCCceEEEeecC---C-CchhheeEEeEEEE
Confidence 999865 8899999987 444443 34566899999632 2 35699999998754
No 116
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.68 E-value=6.5e-16 Score=140.90 Aligned_cols=103 Identities=24% Similarity=0.372 Sum_probs=89.9
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE---CCEEEEeecccCCCCCeecceEEEEeeC----CCcEEEEEEEe
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY---GQKWVRTRTIVDSFGPRWNEQYTWEVFD----PCTVITVGVFD 434 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~---~~~~~~T~~~~~t~~P~Wne~~~~~v~~----~~~~l~i~v~D 434 (772)
.+.|.|.|++|+||+.+ +..|.+||||++.+ ++...||++++++.||.|||.|.|.+.. ....|.|+|||
T Consensus 15 ~~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 15 ESTLTLKILKAVELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCEEEEEEEEecCCCCc---cCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 37899999999999887 66788999999998 3456899999999999999999998542 24579999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
++.++ ++++||.+.+++.++..+.....|++|.
T Consensus 92 ~d~~~------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 92 YDRFS------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCCc------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 99865 8899999999999998888889999885
No 117
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.67 E-value=3.1e-16 Score=140.95 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=89.5
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC----EEEEeecccCCCCCeecceEEEEeeC---CCcEEE
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQ----KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVIT 429 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~----~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~ 429 (772)
.+..+.|.|.|++|+||+++ +..|.+||||++.+ ++ .++||++++++.||+|||+|.|++.. ....|.
T Consensus 10 ~~~~~~L~V~V~~arnL~~~---~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSAL---SIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCCEEEEEEeEecCCccc---ccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 34558999999999999988 66688999999998 22 47899999999999999999999874 467899
Q ss_pred EEEEeCCcCCCCCCCCCCcccEEEEEecCccccC-ceEeeeEee
Q 004127 430 VGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETD-RVYTHSYPL 472 (772)
Q Consensus 430 i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~-~~~~~~~~L 472 (772)
|.|||++.++ ++++||.+.|+|+++... ....+||+|
T Consensus 87 ~~V~~~~~~~------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999998764 889999999999999544 457889875
No 118
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.67 E-value=6.8e-16 Score=140.39 Aligned_cols=103 Identities=18% Similarity=0.339 Sum_probs=88.9
Q ss_pred CccEEEEEEEEecCCCCCccCC-CCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCC---CcEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKD-GRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVG 431 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~ 431 (772)
..+.|.|+|++|+||+.+ + ..|.+||||+|.+.+ ...||++++++.||+|||+|.|.+... ...|.|+
T Consensus 12 ~~~~L~V~v~~a~~L~~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 12 KTGSLEVHIKECRNLAYA---DEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred CCCEEEEEEEEecCCCCc---CCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 347999999999999987 4 567899999998832 358999999999999999999998752 5689999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEee
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPL 472 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 472 (772)
|||++.++ ++++||.+.+++.++..+.....||+|
T Consensus 89 v~d~~~~~------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFG------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCc------CCceeeEEEEecccccccCCCccEEEC
Confidence 99999765 889999999999999777777899986
No 119
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.67 E-value=2.9e-16 Score=139.55 Aligned_cols=99 Identities=25% Similarity=0.412 Sum_probs=85.4
Q ss_pred cEEEEEEEEecCCCCCccCCCC-CCcCcEEEEEEC---CEEEEeecccCCCCCeecceEEEEeeC----CCcEEEEEEEe
Q 004127 363 GILELGVLSAHGLTPMKTKDGR-GTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWEVFD----PCTVITVGVFD 434 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~-g~~dpyv~v~~~---~~~~~T~~~~~t~~P~Wne~~~~~v~~----~~~~l~i~v~D 434 (772)
|.|+|+|++|++|+.. +.. |.+||||+|.+. ...++|+++++|+||+|||.|.|.+.. ....|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 6899999999999987 666 889999999883 346899999999999999999998864 35689999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
++.++ +|++||++.+++.++... ..|+++.
T Consensus 78 ~d~~~------~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 78 SDRFT------ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred CCCCC------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 99875 899999999999999744 4677764
No 120
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=9.1e-16 Score=139.82 Aligned_cols=119 Identities=29% Similarity=0.371 Sum_probs=97.9
Q ss_pred eeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-C
Q 004127 39 MQYLYVRVVKAKDLPGKD-VTGSCDPYVEVKLGN--YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-L 114 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~ 114 (772)
+|.|+|+|++|+||+..+ ..+.+||||++.+++ ...+|+++.++.||.|||.|.|.+.. ..+.|.|+|||++.. +
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999999655 356799999999998 78999999999999999999999874 468999999999988 9
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 115 DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
|++||.+.+++.++...... ...|+.+.. .+ +.. |+|.+++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~----~~~~~~~~~-~~-k~~-G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQ----ENLTKNLLR-NG-KPV-GELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccc----cCcchhhhc-CC-ccc-eEEEEEEEeC
Confidence 99999999999999866321 123445542 23 334 9999999874
No 121
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.66 E-value=4.3e-16 Score=142.37 Aligned_cols=101 Identities=31% Similarity=0.344 Sum_probs=86.9
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDV--TGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD- 96 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~--~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~- 96 (772)
|++.+++.|.-. .+.|.|+|++|+||...+. .+.+||||++++.. .++||++++++.||+|||+|.|.+.
T Consensus 2 Gel~~sL~Y~~~--~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~ 79 (138)
T cd08407 2 GEVLLSISYLPA--ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPS 79 (138)
T ss_pred CEEEEEEEEeCC--CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCH
Confidence 667888888754 4589999999999999873 35599999999976 2568999999999999999999984
Q ss_pred -cCCCceEEEEEEecCCC-CCceeEEEEEEccc
Q 004127 97 -RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNE 127 (772)
Q Consensus 97 -~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~ 127 (772)
++....|.|+|||++.+ ++++||++.+.+..
T Consensus 80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 34567899999999998 99999999999864
No 122
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=6e-16 Score=143.61 Aligned_cols=95 Identities=24% Similarity=0.430 Sum_probs=82.0
Q ss_pred EEEEEEEEecCCCCCccC-----------CCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC--CcEEEE
Q 004127 364 ILELGVLSAHGLTPMKTK-----------DGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP--CTVITV 430 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~-----------~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~--~~~l~i 430 (772)
.|.|+|++|+||+.++.. +..+.+||||+|.++++..||++++++.||+|||+|.|++..+ .+.|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999998522 1235799999999999999999999999999999999998754 578999
Q ss_pred EEEeCCcCCCCCCCCCCcccEEEEEecCccccCc
Q 004127 431 GVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDR 464 (772)
Q Consensus 431 ~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 464 (772)
+|||+|..+ +|++||++.+++.++....
T Consensus 81 ~v~D~d~~~------~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 81 QIRDWDRVG------NDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEECCCCC------CCCEEEEEEEeHHHhccCC
Confidence 999999865 8999999999999986543
No 123
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=6.1e-16 Score=137.63 Aligned_cols=107 Identities=24% Similarity=0.374 Sum_probs=92.8
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCccEEEEEECCeeeeeccccCCCCCCceeceeEEEeeCCC----CCcEEEEEEEcc
Q 004127 199 PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF----EEPLILTVEDRV 274 (772)
Q Consensus 199 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~----~~~l~i~V~d~d 274 (772)
++.+.|+|+|++|++|+ .+.+||||++++++++++|+++++ +.||.|||.|.|.+..+. ...|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 35678999999999998 467999999999999999999876 999999999999985543 457999999999
Q ss_pred CCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004127 275 APNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKH 311 (772)
Q Consensus 275 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 311 (772)
..+++++||++.++|+++... +.+....+|++|..+
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~-~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ-PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC-CCCcceEEEEEeeCc
Confidence 888899999999999999753 455678899999753
No 124
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=9.1e-16 Score=142.40 Aligned_cols=108 Identities=28% Similarity=0.454 Sum_probs=91.2
Q ss_pred EEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccC-CCceEEEE
Q 004127 42 LYVRVVKAKDLPGKDVT--------------GSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRI-QASVLEVL 106 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~--------------~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~~L~i~ 106 (772)
|.|+|++|++|+.+|.. +.+||||+|.+++++.+|++++++.||+|||+|.|.+..+ ..+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 78999999999998744 3689999999999999999999999999999999997432 35789999
Q ss_pred EEecCCC-CCceeEEEEEEccccCCCCCCC--CCCCCeEEEeecCC
Q 004127 107 VKDKDVV-LDDLIGRVMFDLNEVPKRIPPD--SPLAPQWYRLEDRK 149 (772)
Q Consensus 107 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~--~~~~~~w~~L~~~~ 149 (772)
|||++.. +|++||.+.+++.++....... -...+.|+.|.+..
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 9999998 9999999999999987653210 02457899998765
No 125
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.66 E-value=8.1e-16 Score=142.90 Aligned_cols=102 Identities=30% Similarity=0.500 Sum_probs=90.2
Q ss_pred CcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eeeeeeeecCCCCC
Q 004127 35 LVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----------------------------YKGTTKHFEKKSNP 85 (772)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----------------------------~~~kT~~~~~t~nP 85 (772)
..++.+.|.|+|++|+||.+.|..|.+||||++.+++ +..+|++++++.||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 4577899999999999999999999999999999964 23689999999999
Q ss_pred eeccEEEEEeccCCCceEEEEEEecCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 86 EWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 86 ~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
+|||+|.|.+.++....|.|+|||++ +++||++.+++.++... ....||+|
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~------~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC------GLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC------CCCCeEeC
Confidence 99999999998766789999999997 89999999999999732 25789987
No 126
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.66 E-value=1.4e-15 Score=137.79 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=88.4
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC---CEEEEeecccCCCCCeecceEEEE-eeC---CCcEEEEEEEe
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWE-VFD---PCTVITVGVFD 434 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~~P~Wne~~~~~-v~~---~~~~l~i~v~D 434 (772)
.+.|.|+|++|+||+.. +..|.+||||++.+. .++.||+++++ .||+|||+|.|+ +.. ....|.|.|||
T Consensus 15 ~~~L~V~Vi~a~nL~~~---~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 15 ARKLTVTVIRAQDIPTK---DRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCEEEEEEEEecCCCch---hcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 37899999999999987 566889999998772 34689999888 999999999998 543 35789999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
++.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 91 ~~~~~------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 91 VERMR------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCCcc------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99865 8999999999999998888889999985
No 127
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.65 E-value=1.1e-15 Score=137.57 Aligned_cols=94 Identities=30% Similarity=0.346 Sum_probs=83.7
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEec-cCCCceEEEEEEecCCC-
Q 004127 36 VEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKD-RIQASVLEVLVKDKDVV- 113 (772)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~-~~~~~~L~i~V~d~~~~- 113 (772)
.+.++.|.|+|++|++|+. +..+.+||||+++++++++||++++++.||+|||+|.|... ......|+|+|||++..
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 4667899999999999985 56788999999999999999999999999999999999753 23568999999999998
Q ss_pred CCceeEEEEEEccccCC
Q 004127 114 LDDLIGRVMFDLNEVPK 130 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~ 130 (772)
+|++||++.++|.....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 99999999999997763
No 128
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.65 E-value=1.6e-15 Score=138.89 Aligned_cols=105 Identities=22% Similarity=0.214 Sum_probs=87.4
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C-E--EEEeecccCCCCCeecceEEEEeeC---CCcEEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG--Q-K--WVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVG 431 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~--~-~--~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~ 431 (772)
+..+.|.|.|++|+||+.. +..|.+||||+|.+. + + +.||+++++++||+|||+|.|.+.. ....|.|+
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~---~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 12 PTAERLTVVVVKARNLVWD---NGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred CCCCEEEEEEEEeeCCCCc---cCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 3347899999999999987 667899999999882 2 2 4689999999999999999999875 35789999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|||+|.++ ++++||++.|+... .++..++|..+...
T Consensus 89 V~~~d~~~------~~~~iG~v~lg~~~--~g~~~~hW~~ml~~ 124 (136)
T cd08406 89 VAESTEDG------KTPNVGHVIIGPAA--SGMGLSHWNQMLAS 124 (136)
T ss_pred EEeCCCCC------CCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence 99999865 89999999998765 44556888887654
No 129
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.65 E-value=1.1e-15 Score=137.61 Aligned_cols=95 Identities=24% Similarity=0.386 Sum_probs=84.0
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeC--CCcEEEEEEEeCC
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD--PCTVITVGVFDNG 436 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~--~~~~l~i~v~D~~ 436 (772)
....|.|+|+|++|++|+. +..|.+||||+|+++++.+||++++++.||+|||+|.|.... ..+.|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 4566999999999999974 566889999999999999999999999999999999997543 4779999999999
Q ss_pred cCCCCCCCCCCcccEEEEEecCccccC
Q 004127 437 HIHGQGGGGKDSRIGKVRIRLSTLETD 463 (772)
Q Consensus 437 ~~~~~~~~~~~~~lG~~~i~l~~l~~~ 463 (772)
.++ +|++||++.++|.....+
T Consensus 100 ~~s------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC------CCCeeEEEEEEecCCcee
Confidence 875 899999999999977654
No 130
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.65 E-value=1.5e-15 Score=143.75 Aligned_cols=106 Identities=21% Similarity=0.336 Sum_probs=90.2
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-----CCEEEEeecccCCCCCeecceEEEEeeC----CCcEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQYTWEVFD----PCTVITV 430 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~~P~Wne~~~~~v~~----~~~~l~i 430 (772)
...|.|.|+|++|+||+.. +..|.+||||+|.+ +...+||++++++.||.|||.|.|.+.. ....|.|
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~---d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i 100 (162)
T cd04020 24 PSTGELHVWVKEAKNLPAL---KSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLEL 100 (162)
T ss_pred CCCceEEEEEEeeeCCCCC---CCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEE
Confidence 3558999999999999987 66789999999988 2356899999999999999999998643 2457999
Q ss_pred EEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 431 GVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 431 ~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
+|||++.++ ++++||.+.+++.++........|+.+.+
T Consensus 101 ~V~d~d~~~------~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 101 TVWDHDKLS------SNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred EEEeCCCCC------CCceEEEEEEeCCccccCCCccccccCCh
Confidence 999999865 89999999999999976666688887753
No 131
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.65 E-value=1.1e-14 Score=162.30 Aligned_cols=284 Identities=21% Similarity=0.295 Sum_probs=176.8
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCccEEEEEECCee--eeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCC
Q 004127 199 PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQA--SRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAP 276 (772)
Q Consensus 199 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~ 276 (772)
|..-.++|.|++|-+|.+.|.+|++|||+++.+|++. -+...+.+ |+||+|++.|++....+....+.+.|||+|..
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEEEEeecc
Confidence 4555788999999999999999999999999999876 45667776 99999999999999988888999999999999
Q ss_pred CCCceeEEEEEeccc-cccccCCCCCCceeEEcccC---------c-------cccCccccccccceEEEEEEEcCCccc
Q 004127 277 NKDEVLGKCLIPLQA-VQRRLDHKPVNTRWFNLEKH---------V-------IVDGEKKETKFSSRIHLRICLDGGYHV 339 (772)
Q Consensus 277 ~~d~~iG~~~i~l~~-l~~~~~~~~~~~~w~~L~~~---------~-------~~g~~~~~~~~~G~l~l~i~~~~~~~~ 339 (772)
+.|+.||+..++|.. .......+....+.|...+. . ..++. ..--+.+.. ..+.+.|....
T Consensus 689 ~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i-~~P~~~~e~-~~i~~~g~~~~ 766 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGI-PRPYYSYEV-SAIKWKGESDI 766 (1105)
T ss_pred cccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCC-CCCeecCCc-ceEEecChhhh
Confidence 999999999999875 22222222223333322211 0 00000 000000000 11111111000
Q ss_pred c-------------------------------CCCc---ccCCCCCcccc----cc------------------ccCCcc
Q 004127 340 L-------------------------------DEST---HYSSDLRPTAK----QL------------------WKPSIG 363 (772)
Q Consensus 340 ~-------------------------------~~~~---~~~~~~~p~~~----~~------------------~~~~~g 363 (772)
. .+.. ...++..|.-+ +. ..+..-
T Consensus 767 ~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~ 846 (1105)
T KOG1326|consen 767 YDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKY 846 (1105)
T ss_pred hcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhhe
Confidence 0 0000 00001111100 00 012334
Q ss_pred EEEEEEEEecCCCCCccCCCC--CCcCcEEEEEEC-C--EEEEeecccCCC----CCeecceEEEEee------------
Q 004127 364 ILELGVLSAHGLTPMKTKDGR--GTTDAYCVAKYG-Q--KWVRTRTIVDSF----GPRWNEQYTWEVF------------ 422 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~--g~~dpyv~v~~~-~--~~~~T~~~~~t~----~P~Wne~~~~~v~------------ 422 (772)
.++|.|..-.+....+. ++. ..+|-||+-.+- . ++.+|.+.++++ |-.|.-.|.|.-.
T Consensus 847 ~lrviiWnt~~v~l~dd-~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke 925 (1105)
T KOG1326|consen 847 ELRVIIWNTDKVRLNDD-EITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKE 925 (1105)
T ss_pred eEEEEEeeccceeecCc-cceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhh
Confidence 67777777766665432 232 348999998773 3 347787776544 6666443333110
Q ss_pred -----C-----CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccc----------------------cCceEeeeE
Q 004127 423 -----D-----PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLE----------------------TDRVYTHSY 470 (772)
Q Consensus 423 -----~-----~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~----------------------~~~~~~~~~ 470 (772)
+ .-..|.|+|||.|.++ +|++||..+++|+++. ..+.+..|+
T Consensus 926 ~~ws~dete~k~p~rl~iqiWD~d~fs------~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWw 999 (1105)
T KOG1326|consen 926 YSWSLDETEFKIPARLIIQIWDNDKFS------KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWW 999 (1105)
T ss_pred hccccccccccCchheEEEecccCccC------hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccc
Confidence 0 1245999999999987 9999999999999872 233567899
Q ss_pred eeeecCCCCcccccEEEEEEEE
Q 004127 471 PLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 471 ~L~~~~~~g~~~~G~i~l~~~f 492 (772)
|+.........-+|.+++++.+
T Consensus 1000 P~~a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 1000 PCQAEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred eeeecCCCcceecceeeeehhh
Confidence 9998743333347999988875
No 132
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=1.2e-15 Score=140.99 Aligned_cols=91 Identities=36% Similarity=0.531 Sum_probs=85.3
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCce
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~ 117 (772)
.|.|+|+|++|+||+..+. +.+||||++++++++.+|++++++.||+|||+|.|.+.++ ...|.|+|||++.+ +|++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~ 78 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDS 78 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCE
Confidence 4789999999999998887 8999999999999999999999999999999999999876 78899999999988 8999
Q ss_pred eEEEEEEccccCCC
Q 004127 118 IGRVMFDLNEVPKR 131 (772)
Q Consensus 118 lG~~~i~l~~l~~~ 131 (772)
||.+.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999999765
No 133
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.64 E-value=4.9e-16 Score=142.03 Aligned_cols=107 Identities=19% Similarity=0.219 Sum_probs=86.8
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVG 431 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~ 431 (772)
+..+.|.|.|++|+||+.++.. ..+.+||||+|.+.. .+.||++++++.||+|||.|.|.+.. ....|.|+
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~-~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLK-LLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred CCCCeEEEEEEEecCCCccccC-CCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 3448999999999999988321 234499999999843 24699999999999999999999885 35679999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|||+|.++ ++++||.+.+++.. .|...++|..+...
T Consensus 91 V~d~d~~~------~~d~iG~v~lg~~~--~g~~~~hW~~ml~~ 126 (138)
T cd08407 91 VLNQDSPG------QSLPLGRCSLGLHT--SGTERQHWEEMLDN 126 (138)
T ss_pred EEeCCCCc------CcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence 99999875 89999999999975 45555788877653
No 134
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.64 E-value=1.9e-15 Score=137.46 Aligned_cols=104 Identities=29% Similarity=0.393 Sum_probs=92.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecC-CCCCeeccEEEEEeccC---CCceEEEEEEecCCC-C
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEK-KSNPEWNQCFAFSKDRI---QASVLEVLVKDKDVV-L 114 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~---~~~~L~i~V~d~~~~-~ 114 (772)
|.|.|+|++|+||+..+..+.+||||+++++++..+|+++.+ +.||+|||+|.|.+... ....|.|+|||.+.. +
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999888889999999999998889998874 89999999999999775 357899999999988 8
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 115 DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
|++||++.+++.++..+. ....|+.|.+.
T Consensus 81 d~~iG~~~i~l~~l~~~~-----~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEG-----VEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCC-----CCcCceEeecc
Confidence 999999999999998653 24789999875
No 135
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.64 E-value=1.1e-15 Score=139.28 Aligned_cols=112 Identities=24% Similarity=0.314 Sum_probs=94.6
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeeccc-CCCCCeecceEEEEeeCC-----CcEEEEEEEeCCc
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIV-DSFGPRWNEQYTWEVFDP-----CTVITVGVFDNGH 437 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-~~~~T~~~~-~t~~P~Wne~~~~~v~~~-----~~~l~i~v~D~~~ 437 (772)
|+|+|++|++|+.. +..+.+||||+|++++ ...+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 2 L~V~V~sA~~L~~~---~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 2 LEITIISAEDLKNV---NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred EEEEEEEcccCCCC---CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 78999999999987 5668999999999988 889999986 589999999999999876 5889999999987
Q ss_pred CCCCCCCCCCcccEEEEEecCccccCce-----EeeeEeeeecCCCCcccccEEEE
Q 004127 438 IHGQGGGGKDSRIGKVRIRLSTLETDRV-----YTHSYPLLVLHPSGVRKMGEVQL 488 (772)
Q Consensus 438 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 488 (772)
++ ++++||.+.+++.++..+.. ...||+|.... | +..|.|++
T Consensus 79 ~~------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 79 SL------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CC------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 64 89999999999999975543 36899998643 2 34588763
No 136
>PLN03008 Phospholipase D delta
Probab=99.64 E-value=1.3e-15 Score=170.80 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=95.2
Q ss_pred CCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcccc
Q 004127 384 RGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET 462 (772)
Q Consensus 384 ~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~ 462 (772)
.+++||||+|.++++ ..||++++++.||+|||+|.|.+.++...|.|+|+|+|.+ ++++||.+.|++.++..
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~-------gaD~IG~a~IPL~~L~~ 146 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVF-------GAQIIGTAKIPVRDIAS 146 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCcc-------CCceeEEEEEEHHHcCC
Confidence 357899999999876 4699999999999999999999999888999999999987 46899999999999999
Q ss_pred CceEeeeEeeeecCCCCcccccEEEEEEEEeecch
Q 004127 463 DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCSSL 497 (772)
Q Consensus 463 ~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~ 497 (772)
|+....|++|.+...+..+..|+|+++++|.|...
T Consensus 147 Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 147 GERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred CCceEEEEEccccCCCCCCCCcEEEEEEEEEEccc
Confidence 99999999998876544555689999999988643
No 137
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.64 E-value=2.8e-15 Score=136.87 Aligned_cols=113 Identities=23% Similarity=0.370 Sum_probs=95.5
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC---EEEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ---KWVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIH 439 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~ 439 (772)
.++|.|++|++|+.+ +..|.+||||++.+++ ..+||++++++.||.|||+|.|.+... ...|.|+|||++..+
T Consensus 2 ~~~V~v~~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKAD---SSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCC---CCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCC
Confidence 588999999999987 6678999999998864 358999999999999999999999874 678999999999764
Q ss_pred CCCCCCCCcccEEEEEecCcccc---CceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 440 GQGGGGKDSRIGKVRIRLSTLET---DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 440 ~~~~~~~~~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
++++||++.+++.++.. +.....|++|.. .|++++.+.+.
T Consensus 79 ------~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--------~g~i~l~~~~~ 121 (126)
T cd04043 79 ------KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--------QGRLLLRVSME 121 (126)
T ss_pred ------CCceEEEEEEecCHHHcCCCCCCceEEEEcCC--------CCeEEEEEEEe
Confidence 89999999999987632 445678999853 38888888764
No 138
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.64 E-value=1.4e-15 Score=140.70 Aligned_cols=91 Identities=32% Similarity=0.552 Sum_probs=84.2
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
|.|+|.|++|+||+.. +. +.+||||+++++++.+||++++++.||+|||.|.|.+.++...|.|+|||++.++
T Consensus 2 G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~--- 74 (145)
T cd04038 2 GLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS--- 74 (145)
T ss_pred eEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC---
Confidence 7899999999999876 54 7899999999999999999999999999999999999999899999999999875
Q ss_pred CCCCCcccEEEEEecCccccC
Q 004127 443 GGGKDSRIGKVRIRLSTLETD 463 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~ 463 (772)
+|++||.+.+++.++...
T Consensus 75 ---~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 ---KDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred ---CCCEEEEEEEEHHHhhhh
Confidence 899999999999998543
No 139
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.64 E-value=3.2e-15 Score=135.92 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=89.9
Q ss_pred CccEEEEEEEEecCCCCCccCC-CCCCcCcEEEEEEC---CEEEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKD-GRGTTDAYCVAKYG---QKWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVF 433 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~~---~~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~ 433 (772)
..+.|.|.|++|+||+.+ + ..+.+||||++.+. ....+|++++++.||+|||.|.|.+... ...|.|+||
T Consensus 12 ~~~~L~V~v~~a~~L~~~---~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 12 EEEQLTVSLIKARNLPPR---TKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCEEEEEEEEecCCCCc---cCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 347899999999999987 4 46789999999983 3457999999999999999999998753 468999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeee
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLL 473 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~ 473 (772)
|++..+ ++++||++.++|+++........|++|.
T Consensus 89 d~~~~~------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 998754 7899999999999998877778999984
No 140
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.64 E-value=6.1e-16 Score=143.03 Aligned_cols=118 Identities=31% Similarity=0.415 Sum_probs=98.1
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR-- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~-- 97 (772)
|++.+++.|+. ..+.|.|+|++|+||+..+..|.+||||++++.+ .+.+|++++++.||.|||+|.|.+..
T Consensus 2 G~l~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 2 GELLLSLCYQP--TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CeEEEEEEEeC--CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 67788888875 4558999999999999999889999999999853 25789999999999999999999853
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (772)
.....|.|+|||++.+ ++++||++.+++... + ....+|++|....|+
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~--~-----~~~~~w~~l~~~~~~ 127 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKAS--G-----SGGHHWKEVCNPPRR 127 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcCC--C-----chHHHHHHHHhCCCC
Confidence 3356799999999998 999999999999872 2 225788888766544
No 141
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.63 E-value=1.9e-15 Score=137.52 Aligned_cols=104 Identities=26% Similarity=0.410 Sum_probs=92.9
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccC-CCCCeecceEEEEeeCC----CcEEEEEEEeCCc
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVD-SFGPRWNEQYTWEVFDP----CTVITVGVFDNGH 437 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~~P~Wne~~~~~v~~~----~~~l~i~v~D~~~ 437 (772)
|.|.|.|++|+||+.. +..+.+||||+|++++..++|+++.+ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC---CCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 6799999999999987 56688999999999999999999875 89999999999999876 5789999999998
Q ss_pred CCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 438 IHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 438 ~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
++ ++++||.+.+++.++..+.....|++|...
T Consensus 78 ~~------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 78 FS------DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CC------CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 65 889999999999999877777899998753
No 142
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.63 E-value=1.7e-15 Score=139.29 Aligned_cols=106 Identities=27% Similarity=0.384 Sum_probs=91.7
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeeecCCCCCeeccEEEEEec
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-------YKGTTKHFEKKSNPEWNQCFAFSKD 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------~~~kT~~~~~t~nP~Wne~f~f~v~ 96 (772)
+|.+.+++.|+. ....|.|+|++|++|+..+..+.+||||++++.+ .+++|+++++|.||+|||+|.|.+.
T Consensus 2 ~G~l~~~l~y~~--~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~ 79 (133)
T cd04009 2 YGVLTVKAYYRA--SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVP 79 (133)
T ss_pred ceEEEEEEEEcC--CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEec
Confidence 466777777765 4568999999999999988889999999999963 4689999999999999999999986
Q ss_pred cC----CCceEEEEEEecCCC-CCceeEEEEEEccccCCC
Q 004127 97 RI----QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKR 131 (772)
Q Consensus 97 ~~----~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 131 (772)
.. ....|.|+|||++.. ++++||++.++|.++..-
T Consensus 80 ~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 80 PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 42 356899999999998 799999999999999754
No 143
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=6.2e-16 Score=142.39 Aligned_cols=119 Identities=23% Similarity=0.373 Sum_probs=96.5
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeecCCCCCeeccEEEEEec--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN------YKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
+.+.+++.|+.. .+.|.|+|++|+||+..+..|.+||||++.+.+ .++||++++++.||+|||+|.|.+.
T Consensus 2 ~ei~~sL~Y~~~--~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~ 79 (138)
T cd08408 2 PELLLGLEYNAL--TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALF 79 (138)
T ss_pred CeEEEEeEEcCC--CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHH
Confidence 566788888754 459999999999999999889999999999953 2469999999999999999999985
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (772)
++.+..|.|+|||.+.. ++++||++.+++...-.+ ...+|+.+...++.
T Consensus 80 ~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~------~~~hW~~~l~~~~~ 129 (138)
T cd08408 80 QLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEE------EEEHWNEMKESKGQ 129 (138)
T ss_pred HhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCch------HHHHHHHHHhCCCC
Confidence 35567999999999988 999999999988744221 13567777655443
No 144
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.63 E-value=8.4e-16 Score=141.73 Aligned_cols=116 Identities=27% Similarity=0.405 Sum_probs=95.0
Q ss_pred CcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc--CC
Q 004127 27 DKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR--IQ 99 (772)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~--~~ 99 (772)
+.+++.|+ ...+.|.|+|++|+||++.+..|.+||||++.+.+ .+.+|++++++.||+|||+|.|.+.. ..
T Consensus 2 i~~~l~y~--~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~ 79 (133)
T cd08384 2 ILVSLMYN--TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLA 79 (133)
T ss_pred EEEEEEEc--CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhC
Confidence 34566665 45679999999999999999889999999999964 36799999999999999999999853 34
Q ss_pred CceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 004127 100 ASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151 (772)
Q Consensus 100 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (772)
...|.|+|||++.. ++++||++.+++... + +...+|+++...++.
T Consensus 80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~-----~~~~~W~~~l~~~~~ 125 (133)
T cd08384 80 KKTLEITVWDKDIGKSNDYIGGLQLGINAK--G-----ERLRHWLDCLKNPDK 125 (133)
T ss_pred CCEEEEEEEeCCCCCCccEEEEEEEecCCC--C-----chHHHHHHHHhCCCC
Confidence 57899999999988 899999999999752 1 124678888665543
No 145
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.63 E-value=2.5e-15 Score=138.15 Aligned_cols=115 Identities=32% Similarity=0.452 Sum_probs=99.8
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccC-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRI- 98 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~- 98 (772)
|.+.++++|.. +.|+|+|++|+||+..+..+.+||||++.+.+ ++++|++++++.||.|||+|.|.+...
T Consensus 2 g~~~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~ 77 (131)
T cd04026 2 GRIYLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD 77 (131)
T ss_pred cEEEEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh
Confidence 56778877775 78999999999999988888999999999974 578999999999999999999998653
Q ss_pred CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 99 QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 99 ~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
....|.|+|||++.. ++++||++.+++.++... ....||+|.+.+
T Consensus 78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~------~~~~w~~L~~~~ 123 (131)
T cd04026 78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM------PVDGWYKLLNQE 123 (131)
T ss_pred cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC------ccCceEECcCcc
Confidence 356899999999987 899999999999999754 257899998765
No 146
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.63 E-value=4.8e-15 Score=133.36 Aligned_cols=104 Identities=25% Similarity=0.361 Sum_probs=92.4
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCce
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~ 117 (772)
|.|+|+|++|++|+..+..+.+||||++.+++ ...+|++++++.||.|||+|.|.+... .+.|.|+|||++.. +|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 68999999999999998889999999999987 578999999999999999999988764 47899999999988 8999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 004127 118 IGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG 150 (772)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (772)
||++.+++.++..+. ...||.|.+.+.
T Consensus 80 IG~~~~~l~~l~~~~------~~~~~~~~~~~~ 106 (120)
T cd04045 80 LGSVEINVSDLIKKN------EDGKYVEYDDEE 106 (120)
T ss_pred eeEEEEeHHHhhCCC------CCceEEecCCCc
Confidence 999999999998762 367888887653
No 147
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.63 E-value=8.4e-16 Score=141.58 Aligned_cols=119 Identities=23% Similarity=0.361 Sum_probs=95.1
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec--c
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD--R 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~--~ 97 (772)
|++.+++.|.. ..+.|.|+|++|+||+..+..|.+||||++++.+ .+++|+++++|.||+|||+|.|.+. +
T Consensus 1 G~i~~~l~y~~--~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~ 78 (135)
T cd08410 1 GELLLSLNYLP--SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEE 78 (135)
T ss_pred CcEEEEEEECC--CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHH
Confidence 56788888874 4469999999999999999889999999999832 3579999999999999999999984 3
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (772)
.....|.|+|||++.. ++++||++.+....... +...+|+.|....+.
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~------~~~~~W~~l~~~~~~ 127 (135)
T cd08410 79 LENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP------SETNHWRRMLNSQRT 127 (135)
T ss_pred hCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc------hHHHHHHHHHhCCCC
Confidence 3345799999999988 99999999866533221 124678888776544
No 148
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.63 E-value=6.9e-15 Score=133.55 Aligned_cols=118 Identities=28% Similarity=0.346 Sum_probs=96.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCcee
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLI 118 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~l 118 (772)
+|.|+|++|+ |...+..+.+||||+++++++ ..+|++++++.||.|||.|.|.+.+ .+.|.|+|||++.. +|++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 6999999999 554554788999999999987 8999999999999999999999864 57899999999998 99999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeEEEeecCC--CCceeeeEEEEEE
Q 004127 119 GRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK--GDKVKTGELMLAV 162 (772)
Q Consensus 119 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~~G~l~l~~ 162 (772)
|++.++|.++.............|++|.... +.... |+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKV-GELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceee-eeEEEEe
Confidence 9999999999865432222234689998654 12344 9998765
No 149
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.62 E-value=7.8e-15 Score=135.92 Aligned_cols=117 Identities=22% Similarity=0.330 Sum_probs=92.7
Q ss_pred EEEEEEEecC--CCCCccCCCCCCcCcEEEEEE-----CCEEEEeecccCCCCCeecceEEEEeeCC---------CcEE
Q 004127 365 LELGVLSAHG--LTPMKTKDGRGTTDAYCVAKY-----GQKWVRTRTIVDSFGPRWNEQYTWEVFDP---------CTVI 428 (772)
Q Consensus 365 l~v~v~~a~~--L~~~~~~~~~g~~dpyv~v~~-----~~~~~~T~~~~~t~~P~Wne~~~~~v~~~---------~~~l 428 (772)
..++|..|++ |+.. +..+.+||||++++ +.++.||+++++|+||+|||+|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 3455556666 6665 55688999999986 34679999999999999999999999654 3569
Q ss_pred EEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 429 TVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 429 ~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
.|+|||.+.+. .+|++||++.++|..+..+.....|++|.... ....|.++++++.
T Consensus 81 ~~~V~d~~~f~-----~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~---k~~Gg~l~v~ir~ 136 (155)
T cd08690 81 KFEVYHKGGFL-----RSDKLLGTAQVKLEPLETKCEIHESVDLMDGR---KATGGKLEVKVRL 136 (155)
T ss_pred EEEEEeCCCcc-----cCCCeeEEEEEEcccccccCcceEEEEhhhCC---CCcCCEEEEEEEe
Confidence 99999998753 27999999999999998776677899987321 1246899999987
No 150
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=2.7e-15 Score=134.95 Aligned_cols=103 Identities=29% Similarity=0.388 Sum_probs=91.5
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQ 441 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~ 441 (772)
|.|+|.|++|+||+.. +..|.+||||+|.+++ ..++|+++.++.||.|||.|.|++..+.+.|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 6799999999999987 5668999999999977 468999999999999999999999888889999999999865
Q ss_pred CCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 442 GGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 442 ~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
+|++||++.+++.++..+ ....||-|.+.
T Consensus 76 ----~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 ----KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred ----CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 889999999999999766 45788888764
No 151
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.62 E-value=1.1e-15 Score=141.43 Aligned_cols=118 Identities=28% Similarity=0.431 Sum_probs=96.3
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eeeeeeeecCCCCCeeccEEEEEec--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLG--N---YKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~--~---~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
.|++.+++.|+.. .+.|.|+|++|+||+..+..|.+||||++++. + .+.+|++++++.||.|||+|.|.+.
T Consensus 1 ~G~l~~sl~y~~~--~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~ 78 (136)
T cd08405 1 RGELLLSLCYNPT--ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE 78 (136)
T ss_pred CcEEEEEEEEcCC--CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH
Confidence 3678888888854 45899999999999998888999999999983 2 3578999999999999999999974
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG 150 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (772)
......|.|+|||++.+ ++++||++.+++.+... ...+|+++...++
T Consensus 79 ~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-------~~~~w~~~~~~~~ 126 (136)
T cd08405 79 RLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-------ELKHWKDMLSKPR 126 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc-------hHHHHHHHHhCCC
Confidence 33356899999999988 89999999999987521 2456666655543
No 152
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.61 E-value=3.4e-15 Score=137.72 Aligned_cols=117 Identities=22% Similarity=0.347 Sum_probs=94.4
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEec--
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKD-- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~-- 96 (772)
+|++.+++.|+.. .+.|.|+|++|+||+..+ .+.+||||++.+.+ .+++|++++++.||+|||+|.|.+.
T Consensus 1 ~G~i~~sl~y~~~--~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~ 77 (137)
T cd08409 1 LGDIQISLTYNPT--LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSR 77 (137)
T ss_pred CcEEEEEEEECCC--CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHH
Confidence 3678888888854 469999999999999888 78899999999864 3678999999999999999999984
Q ss_pred cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecC
Q 004127 97 RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDR 148 (772)
Q Consensus 97 ~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 148 (772)
++....|.|+|||.+.. ++++||++.+.......+. ...+|..+...
T Consensus 78 ~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~-----~~~hW~~~~~~ 125 (137)
T cd08409 78 QLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGK-----ELEHWNDMLSK 125 (137)
T ss_pred HhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCCh-----HHHHHHHHHhC
Confidence 34557899999999988 9999999999865443331 13456665544
No 153
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.61 E-value=1.4e-15 Score=140.78 Aligned_cols=117 Identities=30% Similarity=0.363 Sum_probs=95.9
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR-- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~-- 97 (772)
|++.+++.|+. ..+.|.|+|++|+||+..+..|.+||||++++.+ .+.+|++++++.||.|||+|.|.+..
T Consensus 2 G~l~~~l~y~~--~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 2 GDICFSLRYVP--TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred cEEEEEeEEcC--CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 66788888875 4469999999999999999889999999999953 35789999999999999999999853
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKG 150 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 150 (772)
.....|.|+|||++.. +|++||++.+++...- ....+|+++...++
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~-------~~~~~W~~~~~~~~ 126 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATG-------AELRHWSDMLASPR 126 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccCC-------hHHHHHHHHHhCCC
Confidence 2345899999999988 8999999999997532 12467777766543
No 154
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=6.8e-15 Score=132.02 Aligned_cols=111 Identities=32% Similarity=0.469 Sum_probs=94.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCceeE
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLIG 119 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~lG 119 (772)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.+.....+.|+|||++.. ++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999988888999999999987 457999999999999999999999765678999999999988 899999
Q ss_pred EEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEE
Q 004127 120 RVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELM 159 (772)
Q Consensus 120 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~ 159 (772)
++.+++.++..+. ....|++|.+..+.. . |.|.
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~L~~~g~~~-~-~~~~ 113 (115)
T cd04040 81 SAYIDLSDLEPEE-----TTELTLPLDGQGGGK-L-GAVF 113 (115)
T ss_pred EEEEEHHHcCCCC-----cEEEEEECcCCCCcc-C-ceEE
Confidence 9999999987652 257899998764432 2 6664
No 155
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.61 E-value=2.9e-15 Score=138.51 Aligned_cols=103 Identities=20% Similarity=0.249 Sum_probs=87.3
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--CE---EEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG--QK---WVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVF 433 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~--~~---~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~ 433 (772)
.+.|.|.|++|+||+.+ |..|.+||||++.+. ++ ..||++++++.||.|||+|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 14 TNRLTVVVLKARHLPKM---DVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred CCeEEEEEEEeeCCCcc---ccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 36899999999999987 667899999999883 32 4789999999999999999999874 3567999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|++.++ ++++||++.+++.. .+....+|++|...
T Consensus 91 d~d~~~------~~~~iG~~~~~~~~--~~~~~~~w~~l~~~ 124 (136)
T cd08404 91 DSDRVT------KNEVIGRLVLGPKA--SGSGGHHWKEVCNP 124 (136)
T ss_pred ECCCCC------CCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence 999875 89999999999998 34456889988653
No 156
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.61 E-value=5.9e-15 Score=135.66 Aligned_cols=103 Identities=26% Similarity=0.394 Sum_probs=89.8
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCC--CcEEEEEEEeC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDP--CTVITVGVFDN 435 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~--~~~l~i~v~D~ 435 (772)
+.|.|+|++|++|+.. +..+.+||||+|.+.+ ..+||++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPM---DPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCc---CCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 6899999999999987 5567899999999953 568999999999999999999998754 56899999999
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
+..+ ++++||.+.++++++... ....||+|.+.
T Consensus 90 ~~~~------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 90 DRTT------RNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCC------CcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 8764 889999999999999754 56899999764
No 157
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.60 E-value=1.8e-14 Score=131.63 Aligned_cols=116 Identities=25% Similarity=0.354 Sum_probs=94.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeeeeeecCCCCCee-ccEEEEEeccCCCceEEEE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-------------YKGTTKHFEKKSNPEW-NQCFAFSKDRIQASVLEVL 106 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------------~~~kT~~~~~t~nP~W-ne~f~f~v~~~~~~~L~i~ 106 (772)
...|++++|+||+ .+..|.+||||++.+.+ ++++|++++++.||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 4678999999998 67789999999999953 3689999999999999 9999999853 5789999
Q ss_pred EEecCCC-C---CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEE
Q 004127 107 VKDKDVV-L---DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAV 162 (772)
Q Consensus 107 V~d~~~~-~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~ 162 (772)
|||++.. + +++||++.+++.++..... ......||+|...... .+. |+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~-G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVS-GQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEE-EEEEEEe
Confidence 9997653 2 7999999999999976632 2336689999876533 366 9998865
No 158
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.60 E-value=5.2e-15 Score=136.31 Aligned_cols=102 Identities=32% Similarity=0.508 Sum_probs=90.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeeeeeecCCCCCeeccEEEEEeccC---------------CCce
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLG----NYKGTTKHFEKKSNPEWNQCFAFSKDRI---------------QASV 102 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~----~~~~kT~~~~~t~nP~Wne~f~f~v~~~---------------~~~~ 102 (772)
|+|+|++|+||+.. ..+.+||||+++++ +++++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 67899999999998 6789999999999999999999998654 4578
Q ss_pred EEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 103 LEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 103 L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
|.|+|||.+.. ++++||++.+++.++.... ....||+|.+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~-----~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAG-----SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCC-----cccceEecCCcC
Confidence 99999999988 9999999999999987542 257899998875
No 159
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=9.4e-15 Score=131.12 Aligned_cols=111 Identities=32% Similarity=0.435 Sum_probs=94.6
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCcCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~~~~~ 442 (772)
|+|.|++|++|+.. +..|.+||||+|.+++ ..++|+++.++.||.|||+|.|.+.+ ..+.+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 47899999999987 5568899999999965 45899999999999999999999987 5688999999999764
Q ss_pred CCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEE
Q 004127 443 GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQ 487 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~ 487 (772)
++++||++.+++.++..+.....|++|... |....|.+.
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---g~~~~~~~~ 113 (115)
T cd04040 75 ---KDDLLGSAYIDLSDLEPEETTELTLPLDGQ---GGGKLGAVF 113 (115)
T ss_pred ---CCCceEEEEEEHHHcCCCCcEEEEEECcCC---CCccCceEE
Confidence 899999999999999988888999999753 333446654
No 160
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.60 E-value=6.7e-15 Score=135.75 Aligned_cols=118 Identities=26% Similarity=0.329 Sum_probs=95.0
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc--
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR-- 97 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~-- 97 (772)
|++.+++.|.. ..+.|+|+|++|++|++.+..|.+||||++++.+ .+.+|++++++.||.|||+|.|.+..
T Consensus 1 g~l~~~~~y~~--~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 78 (134)
T cd08403 1 GELMFSLCYLP--TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPEN 78 (134)
T ss_pred CeEEEEEEEcC--CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHH
Confidence 56778888884 5579999999999999999889999999999853 35789999999999999999998743
Q ss_pred CCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 004127 98 IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151 (772)
Q Consensus 98 ~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (772)
.....|.|+|||++.. ++++||++.+++.... .....|+++...++.
T Consensus 79 ~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~-------~~~~~w~~~~~~~~~ 126 (134)
T cd08403 79 VDNVSLIIAVVDYDRVGHNELIGVCRVGPNADG-------QGREHWNEMLANPRK 126 (134)
T ss_pred hCCCEEEEEEEECCCCCCCceeEEEEECCCCCC-------chHHHHHHHHHCCCC
Confidence 3345799999999998 8999999999876321 124567777655443
No 161
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.59 E-value=2.3e-14 Score=132.75 Aligned_cols=118 Identities=21% Similarity=0.322 Sum_probs=94.3
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE--C---CeeeeeeeecCCCCCeeccEEEEEeccC--------CCceEEEE
Q 004127 42 LYVRVVKAKD--LPGKDVTGSCDPYVEVKL--G---NYKGTTKHFEKKSNPEWNQCFAFSKDRI--------QASVLEVL 106 (772)
Q Consensus 42 L~V~v~~a~~--L~~~~~~~~~dpyv~v~~--~---~~~~kT~~~~~t~nP~Wne~f~f~v~~~--------~~~~L~i~ 106 (772)
..++|..|++ |+..+..+.+||||++++ . .++.||+++++|.||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4567777777 667776788999999997 2 2689999999999999999999998542 24679999
Q ss_pred EEecCCC--CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 107 VKDKDVV--LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 107 V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
|||++.+ +|++||++.++|..+..+. ....|++|.+.. +... |+|.+.+.+..
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~-----~~~~~~~L~~~~-k~~G-g~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKC-----EIHESVDLMDGR-KATG-GKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccC-----cceEEEEhhhCC-CCcC-CEEEEEEEecC
Confidence 9999886 7999999999999997653 245799987532 2344 99999997753
No 162
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.59 E-value=1.1e-14 Score=134.76 Aligned_cols=106 Identities=27% Similarity=0.342 Sum_probs=88.8
Q ss_pred cCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C---EEEEeecccCCCCCeecceEEEEeeCC---CcEEEE
Q 004127 359 KPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITV 430 (772)
Q Consensus 359 ~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~--~---~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i 430 (772)
.+..|.|.|.|++|++|+.+ +..|.+||||+|.++ + ...+|++++++.||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred cCCCCeEEEEEEEeeCCCcc---cCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 34558999999999999987 667899999999984 2 347899999999999999999998743 347999
Q ss_pred EEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 431 GVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 431 ~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
+|||++.++ +|++||++.+++... +....+|+++...
T Consensus 88 ~v~d~~~~~------~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 88 TVLDYDRIG------KNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred EEEeCCCCC------CCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 999999875 899999999999875 4456889888654
No 163
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.59 E-value=1e-14 Score=134.18 Aligned_cols=92 Identities=17% Similarity=0.275 Sum_probs=80.7
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-------CEEEEeecccCCCCCeecceEEEEeeCC-----CcEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-------QKWVRTRTIVDSFGPRWNEQYTWEVFDP-----CTVIT 429 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-------~~~~~T~~~~~t~~P~Wne~~~~~v~~~-----~~~l~ 429 (772)
.+.|.|.|++|++|+.+ +..|.+||||+|.+. ...+||+++++|.||+|||.|.|.+... ...|.
T Consensus 15 ~~~L~V~Vi~A~~L~~~---~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 15 EQSLRVEILNARNLLPL---DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred CCEEEEEEEEeeCCCCc---CCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 36899999999999987 666899999999884 3468999999999999999999998752 45899
Q ss_pred EEEEeCCcCCCCCCCCCCcccEEEEEecCcccc
Q 004127 430 VGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET 462 (772)
Q Consensus 430 i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~ 462 (772)
|+|||++.++ ++++||++.++|+++..
T Consensus 92 ~~V~d~d~~~------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 92 FTVKDYDLLG------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEecCCCC------CCcEeEEEEEeHHHCCc
Confidence 9999999865 79999999999999864
No 164
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.59 E-value=1.8e-14 Score=132.68 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=85.1
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC---EEEEeecccCCCCCeecceEEEEeeC--C-CcEEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIVDSFGPRWNEQYTWEVFD--P-CTVITVG 431 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~---~~~~T~~~~~t~~P~Wne~~~~~v~~--~-~~~l~i~ 431 (772)
+..|.|.|.|++|++|+.+ +..|.+||||++.+ ++ ...+|+++++|.||+|||+|.|.+.. . ...|.|+
T Consensus 11 ~~~~~L~V~vi~a~~L~~~---d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~ 87 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQT---DMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFT 87 (135)
T ss_pred CCCCeEEEEEEEecCCCcc---cCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEE
Confidence 4448999999999999987 66689999999997 32 34799999999999999999999864 2 3479999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|||++..+ ++++||++.|+...... ...++|+.|...
T Consensus 88 V~d~d~~~------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~~ 124 (135)
T cd08410 88 VYGHNVKS------SNDFIGRIVIGQYSSGP-SETNHWRRMLNS 124 (135)
T ss_pred EEeCCCCC------CCcEEEEEEEcCccCCc-hHHHHHHHHHhC
Confidence 99999864 89999999877654432 234778887654
No 165
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.59 E-value=3.3e-15 Score=138.12 Aligned_cols=118 Identities=30% Similarity=0.385 Sum_probs=99.4
Q ss_pred cCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeeecCCCCCeeccEEEEEeccC-
Q 004127 25 TGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-----KGTTKHFEKKSNPEWNQCFAFSKDRI- 98 (772)
Q Consensus 25 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----~~kT~~~~~t~nP~Wne~f~f~v~~~- 98 (772)
|++.+++.|+-.. +.|.|+|++|+||+..+..+.+||||++++.+. +.+|+++.++.||.|||+|.|.+...
T Consensus 1 G~i~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~ 78 (134)
T cd00276 1 GELLLSLSYLPTA--ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ 78 (134)
T ss_pred CeEEEEEEeeCCC--CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH
Confidence 5677888887544 589999999999999888889999999999752 57999999999999999999998653
Q ss_pred -CCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC
Q 004127 99 -QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD 151 (772)
Q Consensus 99 -~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 151 (772)
....|.|+|||.+.. ++++||.+.+++.+ .+ ....+|++|....++
T Consensus 79 l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~-----~~~~~W~~l~~~~~~ 126 (134)
T cd00276 79 LEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GG-----EELEHWNEMLASPRK 126 (134)
T ss_pred hCCcEEEEEEEecCCCCCCceeEEEEECCCC--CC-----cHHHHHHHHHhCCCC
Confidence 257899999999987 99999999999998 22 235789999877554
No 166
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=8.5e-15 Score=132.74 Aligned_cols=90 Identities=33% Similarity=0.530 Sum_probs=81.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCce
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYK--GTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~--~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~ 117 (772)
.|+|+|++|++|++.+..|.+||||+++++++. .+|++++++.||+|||+|.|.+..+....|.|+|||++.. +|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 479999999999999988999999999999864 5788889999999999999998766678999999999998 9999
Q ss_pred eEEEEEEccccCC
Q 004127 118 IGRVMFDLNEVPK 130 (772)
Q Consensus 118 lG~~~i~l~~l~~ 130 (772)
||++.+++.+...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998764
No 167
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.58 E-value=2.2e-14 Score=130.18 Aligned_cols=116 Identities=21% Similarity=0.310 Sum_probs=92.8
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
.|.|+|.+|+ |... +..+.+||||+|+++++ ..+|++++++.||.|||.|.|.+. ..+.|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC---
Confidence 6889999998 5443 44678999999999887 799999999999999999999975 4678999999999865
Q ss_pred CCCCCcccEEEEEecCccccCc---e--EeeeEeeeecCCCCcccccEEEEEE
Q 004127 443 GGGKDSRIGKVRIRLSTLETDR---V--YTHSYPLLVLHPSGVRKMGEVQLAV 490 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~g~~~~G~i~l~~ 490 (772)
++++||++.++|.++..+. . ...|+++........+..|.|.+++
T Consensus 75 ---~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ---ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ---CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 8999999999999986432 1 3458888754421224568888765
No 168
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=2.8e-14 Score=128.52 Aligned_cols=112 Identities=28% Similarity=0.469 Sum_probs=88.1
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeCCcCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDNGHIHG 440 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~~~~~ 440 (772)
|+|.|++|+||+.. |.+||||+++++++ .++|+++++ .||.|||+|.|.+.. ....|.|.+||.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999853 68999999999885 489999999 999999999999986 3457888888876532
Q ss_pred CCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
++..+|++.|.. +..+...+.||+|.+... +.+..|+|+++++|
T Consensus 74 -----~~~~~g~v~l~~--~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 -----RDIVIGKVALSK--LDLGQGKDEWFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred -----CeeEEEEEEecC--cCCCCcceeEEECccCCC-CCCcCceEEEEEEC
Confidence 566677666554 444666799999987643 23457999999876
No 169
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.58 E-value=7.2e-15 Score=135.94 Aligned_cols=104 Identities=19% Similarity=0.299 Sum_probs=86.7
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CC---EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQ---KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGV 432 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~---~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v 432 (772)
..+.|.|+|++|+||+.+ +..|.+||||+|.+ ++ ...||++++++.||.|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~v~vi~a~~L~~~---~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v 89 (136)
T cd08405 13 TANRITVNIIKARNLKAM---DINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV 89 (136)
T ss_pred CCCeEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 347899999999999887 66789999999988 33 24799999999999999999999863 246899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
||++.++ ++++||++.+++.+. +...++|++|...
T Consensus 90 ~d~~~~~------~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 90 MDKDRLS------RNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred EECCCCC------CCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 9999865 889999999999986 4445778877653
No 170
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.58 E-value=3.3e-14 Score=130.00 Aligned_cols=118 Identities=21% Similarity=0.244 Sum_probs=91.1
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-------------CEEEEeecccCCCCCee-cceEEEEeeCCCcEEE
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-------------QKWVRTRTIVDSFGPRW-NEQYTWEVFDPCTVIT 429 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-------------~~~~~T~~~~~t~~P~W-ne~~~~~v~~~~~~l~ 429 (772)
++.|.+++|+||+ . +..|++||||++++. ++.+||+++++++||+| ||.|.|.+. +.+.|.
T Consensus 2 ~~~~~~~~A~~L~-~---~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-K---GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLE 76 (137)
T ss_pred EEEEEEEEeCCCC-C---ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEE
Confidence 4678999999997 4 667899999999883 23689999999999999 999999985 467899
Q ss_pred EEEEeCCcCCCCCCCCCCcccEEEEEecCccccC---ceEeeeEeeeecCCCCcccccEEEEEE
Q 004127 430 VGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETD---RVYTHSYPLLVLHPSGVRKMGEVQLAV 490 (772)
Q Consensus 430 i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~g~~~~G~i~l~~ 490 (772)
|+|||++..+ +...+++||++.+++.++..+ .....||+|......+ .-.|+|.+.+
T Consensus 77 v~V~D~~~~~---~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~~l~~ 136 (137)
T cd08691 77 IEVKDKFAKS---RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQLTFRF 136 (137)
T ss_pred EEEEecCCCC---CccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEEEEEe
Confidence 9999976421 111379999999999999654 3457789887543222 2358877654
No 171
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.57 E-value=4.5e-15 Score=136.81 Aligned_cols=105 Identities=16% Similarity=0.290 Sum_probs=88.3
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCC---CcEEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVG 431 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~ 431 (772)
...+.|.|+|++|+||+.+ +..|.+||||+|.+.+ ...||++++++.||+|||+|.|.+..+ ...|.|+
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~---d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~ 86 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAM---DANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEIT 86 (133)
T ss_pred CCCCEEEEEEEEEcCCCCc---CCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEE
Confidence 4458999999999999987 6668899999999843 358999999999999999999998753 4689999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|||++..+ ++++||.+.+++.. .+....+||++...
T Consensus 87 V~d~d~~~------~~~~lG~~~i~l~~--~~~~~~~W~~~l~~ 122 (133)
T cd08384 87 VWDKDIGK------SNDYIGGLQLGINA--KGERLRHWLDCLKN 122 (133)
T ss_pred EEeCCCCC------CccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence 99998754 88999999999986 34445789988653
No 172
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.57 E-value=3.1e-14 Score=129.33 Aligned_cols=106 Identities=29% Similarity=0.448 Sum_probs=91.0
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEe-c-
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSK-D- 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v-~- 96 (772)
+|++.+++.|+-.. +.|.|+|++|++|+..+..+.+||||++.+.+ .+.+|++++++.||.|||+|.|.. .
T Consensus 1 ~G~~~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~ 78 (123)
T cd04035 1 LGTLEFTLLYDPAN--SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITE 78 (123)
T ss_pred CcEEEEEEEEeCCC--CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCH
Confidence 36788888888654 58999999999999988888999999999842 468999999999999999999963 2
Q ss_pred -cCCCceEEEEEEecCCCCCceeEEEEEEccccCCC
Q 004127 97 -RIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKR 131 (772)
Q Consensus 97 -~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~ 131 (772)
+.....|.|+|||++..++++||++.++++++..+
T Consensus 79 ~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 79 EDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred HHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCC
Confidence 23357899999999877889999999999999865
No 173
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.57 E-value=3.2e-14 Score=130.98 Aligned_cols=105 Identities=13% Similarity=0.192 Sum_probs=86.5
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC------EEEEeecccCCCCCeecceEEEEeeC---CCcEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ------KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITV 430 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i 430 (772)
+..+.|.|.|++|+||+.+ +..|.+||||++.+.+ .+.||++++++.||+|||+|.|.+.. ....|.|
T Consensus 12 ~~~~~L~V~VikarnL~~~---~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNL---AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred CCCCeEEEEEEEecCCCcc---ccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 3448999999999999987 6678899999998832 24799999999999999999999984 3568999
Q ss_pred EEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 431 GVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 431 ~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
.|||++.++ ++++||++.+++..... ...++|+.+..
T Consensus 89 ~V~~~~~~~------~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 89 SVYNKRKMK------RKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred EEEECCCCC------CCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 999999865 89999999999876532 22367887754
No 174
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.57 E-value=1.8e-14 Score=129.46 Aligned_cols=100 Identities=14% Similarity=0.304 Sum_probs=81.8
Q ss_pred CcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCC-CCeeccEEEEEeccC-C
Q 004127 27 DKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKS-NPEWNQCFAFSKDRI-Q 99 (772)
Q Consensus 27 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~-nP~Wne~f~f~v~~~-~ 99 (772)
+-+|+.|. +..+.|.|+|++|+||++.+..+.+||||+|.+-. .++||+++++|. ||+|||+|.|++... .
T Consensus 3 l~~sL~Y~--p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~ 80 (135)
T cd08692 3 LQLGTCFQ--AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEH 80 (135)
T ss_pred EEEEeeec--CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhh
Confidence 34555554 56679999999999999876567789999998853 378999999995 699999999999542 2
Q ss_pred CceEEEEEEecCCC-CCceeEEEEEEcccc
Q 004127 100 ASVLEVLVKDKDVV-LDDLIGRVMFDLNEV 128 (772)
Q Consensus 100 ~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l 128 (772)
.-.|.|+|||.+.. ++++||.+.+.....
T Consensus 81 ~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 81 GIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 35788999999888 999999999998764
No 175
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.57 E-value=1.1e-14 Score=134.46 Aligned_cols=105 Identities=21% Similarity=0.347 Sum_probs=87.7
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEE
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGV 432 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v 432 (772)
..+.|.|.|++|+||+.+ + .+.+||||+|.+.+ .+.||++++++.||+|||.|.|.+.. ....|.|+|
T Consensus 13 ~~~~L~V~V~~a~nL~~~---~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 13 TLNRLTVVVLRARGLRQL---D-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred CCCeEEEEEEEecCCCcc---c-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 347899999999999987 5 57799999998832 35799999999999999999999874 246899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
||.+..+ ++++||++.|+......+...++|+.+...
T Consensus 89 ~~~~~~~------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~ 125 (137)
T cd08409 89 MQSGGVR------KSKLLGRVVLGPFMYARGKELEHWNDMLSK 125 (137)
T ss_pred EeCCCCC------CcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence 9998754 889999999998776666667888887653
No 176
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.57 E-value=4.2e-14 Score=130.42 Aligned_cols=105 Identities=23% Similarity=0.331 Sum_probs=86.3
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC--C---EEEEeecccCCCCCeecceEEEEeeCC---CcEEEEE
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG--Q---KWVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVG 431 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~--~---~~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~ 431 (772)
+..+.|+|.|++|++|+.+ +..|.+||||+|.+. + ...||++++++.||.|||.|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~v~~A~~L~~~---d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAM---DITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred CCCCEEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 3448999999999999988 667899999999983 2 257999999999999999999998642 3469999
Q ss_pred EEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 432 VFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 432 v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|||++..+ ++++||.+.+++... +....+|+++...
T Consensus 88 v~d~~~~~------~~~~IG~~~l~~~~~--~~~~~~w~~~~~~ 123 (134)
T cd08403 88 VVDYDRVG------HNELIGVCRVGPNAD--GQGREHWNEMLAN 123 (134)
T ss_pred EEECCCCC------CCceeEEEEECCCCC--CchHHHHHHHHHC
Confidence 99999865 899999999998743 3444788887653
No 177
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.57 E-value=4.1e-14 Score=127.43 Aligned_cols=111 Identities=32% Similarity=0.497 Sum_probs=86.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccC--CCceEEEEEEecCCC-CCce
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRI--QASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~~L~i~V~d~~~~-~d~~ 117 (772)
|.|+|++|+||+.. +.+||||+++++++ .++|+++++ .||.|||+|.|.+... ....|.|.+||.+.. ++..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999985 479999988 9999999999998653 235788888998766 6677
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEEEe
Q 004127 118 IGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAVWM 164 (772)
Q Consensus 118 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~ 164 (772)
+|.+.++. +..+ .....||+|.+..+. ... |+|.+.+.|
T Consensus 78 ~g~v~l~~--~~~~-----~~~~~w~~L~~~~~~~~~~-G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALSK--LDLG-----QGKDEWFPLTPVDPDSEVQ-GSVRLRARY 117 (117)
T ss_pred EEEEEecC--cCCC-----CcceeEEECccCCCCCCcC-ceEEEEEEC
Confidence 77766554 3332 235789999876543 234 999998864
No 178
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.56 E-value=3.1e-14 Score=128.00 Aligned_cols=93 Identities=20% Similarity=0.299 Sum_probs=77.1
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCccEEEEEECC-----eeeeeccccCCCC-CCceeceeEEEeeCCCC-CcEEEEEE
Q 004127 199 PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-----QASRTRISPSKTI-NPMWNEDLMFVAAEPFE-EPLILTVE 271 (772)
Q Consensus 199 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~-nP~wne~f~f~~~~~~~-~~l~i~V~ 271 (772)
|..+.|+|.|++|+||+..+..+.+||||+|.+-. .+.||+++++ +. ||.|||+|.|.+..... -.+.++||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence 45568999999999999886667789999998852 4678998877 74 69999999999975432 36888899
Q ss_pred EccCCCCCceeEEEEEecccc
Q 004127 272 DRVAPNKDEVLGKCLIPLQAV 292 (772)
Q Consensus 272 d~d~~~~d~~iG~~~i~l~~l 292 (772)
|++..+++++||++.++....
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 998888999999999998764
No 179
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.56 E-value=1.7e-14 Score=128.11 Aligned_cols=99 Identities=24% Similarity=0.307 Sum_probs=84.9
Q ss_pred CCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcc
Q 004127 383 GRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 383 ~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l 460 (772)
..|.+||||+|.++++ ..+|++++++.||+|||.|.|.+.++ .+.|.|+|+|++.+ ++++||.+.++|+++
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-------~d~~iG~~~v~L~~l 81 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-------HDPVLGSVSISLNDL 81 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-------CCCeEEEEEecHHHH
Confidence 4688999999999875 57999999999999999999999875 57899999999874 689999999999998
Q ss_pred cc-CceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 461 ET-DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 461 ~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
.. +.....||+|.+ +..|+|++++.|.|
T Consensus 82 ~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 82 IDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred HhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 43 444579999964 24599999999976
No 180
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.55 E-value=2.9e-14 Score=126.69 Aligned_cols=101 Identities=28% Similarity=0.444 Sum_probs=85.9
Q ss_pred CCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCceeEEEEEEccccCCCCCCC
Q 004127 57 VTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPD 135 (772)
Q Consensus 57 ~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 135 (772)
.+|.+||||+++++++ ..+|++++++.||+|||+|.|.+.+...+.|.|+|||.+..+|++||++.++|.++....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~--- 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDAT--- 85 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhh---
Confidence 4688999999999985 679999999999999999999998766788999999998878999999999999996542
Q ss_pred CCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 136 SPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 136 ~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
.....||+|.+.. . |+|.+++.|.+
T Consensus 86 -~~~~~w~~L~~~~----~-G~i~~~~~~~p 110 (111)
T cd04052 86 -SVGQQWFPLSGNG----Q-GRIRISALWKP 110 (111)
T ss_pred -hccceeEECCCCC----C-CEEEEEEEEec
Confidence 2357999998522 2 99999987753
No 181
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.55 E-value=2.7e-14 Score=132.69 Aligned_cols=102 Identities=29% Similarity=0.533 Sum_probs=88.5
Q ss_pred ecCceEEEEEEEEEeecCCCCCCCCCCccEEEEEECC-----------------------------eeeeeccccCCCCC
Q 004127 197 LSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-----------------------------QASRTRISPSKTIN 247 (772)
Q Consensus 197 ~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----------------------------~~~kT~~~~~~t~n 247 (772)
..+..+.|.|+|++|++|...|..|.+||||++.++. +.++|+++.+ +.|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tln 101 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLN 101 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCC
Confidence 3477899999999999999999999999999999863 2368888876 999
Q ss_pred CceeceeEEEeeCCCCCcEEEEEEEccCCCCCceeEEEEEeccccccccCCCCCCceeEEc
Q 004127 248 PMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNL 308 (772)
Q Consensus 248 P~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L 308 (772)
|.|||+|.|.+.....+.|.|+|||++ +++||++.++++++.. .....||+|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-----~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-----CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-----CCCCCeEeC
Confidence 999999999997766778999999986 8899999999999872 236899986
No 182
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.55 E-value=9.2e-14 Score=127.34 Aligned_cols=116 Identities=27% Similarity=0.439 Sum_probs=97.1
Q ss_pred eEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeeeeeecCCC-CCeeccEEEEEeccCCCceEEEEEEec
Q 004127 40 QYLYVRVVKAKDLPGKD--VTGSCDPYVEVKLG------NYKGTTKHFEKKS-NPEWNQCFAFSKDRIQASVLEVLVKDK 110 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~--~~~~~dpyv~v~~~------~~~~kT~~~~~t~-nP~Wne~f~f~v~~~~~~~L~i~V~d~ 110 (772)
..|+|+|++|+||+..+ ..+.+||||++++. ..+.+|+++.++. ||+|||+|.|.+..+....|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 37999999999999877 57889999999994 3568999987776 999999999998765567899999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-eeeeEEEEEEEe
Q 004127 111 DVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDK-VKTGELMLAVWM 164 (772)
Q Consensus 111 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 164 (772)
+..++++||.+.+++.++..+ ..|++|.+..|.. .. |.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~-~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLEL-STLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcc-eeEEEEEEE
Confidence 877899999999999999533 3689998877653 34 899888764
No 183
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.55 E-value=1.1e-14 Score=134.60 Aligned_cols=103 Identities=23% Similarity=0.356 Sum_probs=88.7
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-----EEEeecccCCCCCeecceEEEEeeCC---CcEEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-----WVRTRTIVDSFGPRWNEQYTWEVFDP---CTVITVGVF 433 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-----~~~T~~~~~t~~P~Wne~~~~~v~~~---~~~l~i~v~ 433 (772)
.+.|.|.|++|+||+.. +..+.+||||++.+.+. .++|+++.++.||.|||+|.|.+... ...|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 13 AERLTVVVLKARNLPPS---DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 37899999999999987 56688999999998542 47999999999999999999998764 578999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|.+..+ ++++||.+.+++++ .+...++|++|...
T Consensus 90 d~~~~~------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 90 DKDSVG------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred ecCCCC------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 998754 88999999999999 55566899998764
No 184
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.55 E-value=3.7e-15 Score=151.61 Aligned_cols=103 Identities=25% Similarity=0.435 Sum_probs=90.0
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeecccCCCCCeecceEEEEeeC--CCcEEEEEEEeC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIVDSFGPRWNEQYTWEVFD--PCTVITVGVFDN 435 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~~P~Wne~~~~~v~~--~~~~l~i~v~D~ 435 (772)
..|.|.|.+|+||.+| |.+|.|||||++++- ..+.||++++.++||+|||+|+|.+.. ....|.|+||||
T Consensus 180 ~~l~v~i~ea~NLiPM---DpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPM---DPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ceEEEEehhhcccccc---CCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 4799999999999999 788999999999992 345899999999999999999999874 467899999999
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|..+ ++|++|.....+++|... +...||.|.+.
T Consensus 257 DrTs------RNDFMGslSFgisEl~K~-p~~GWyKlLsq 289 (683)
T KOG0696|consen 257 DRTS------RNDFMGSLSFGISELQKA-PVDGWYKLLSQ 289 (683)
T ss_pred cccc------cccccceecccHHHHhhc-chhhHHHHhhh
Confidence 9976 999999999999999653 45788888654
No 185
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.55 E-value=3.4e-14 Score=130.87 Aligned_cols=103 Identities=23% Similarity=0.390 Sum_probs=90.2
Q ss_pred EEEEEEEeecCCCCCCCCCCccEEEEEEC----CeeeeeccccCCCCCCceeceeEEEeeCC---------------CCC
Q 004127 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILG----NQASRTRISPSKTINPMWNEDLMFVAAEP---------------FEE 264 (772)
Q Consensus 204 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~----~~~~kT~~~~~~t~nP~wne~f~f~~~~~---------------~~~ 264 (772)
|+|.|++|++|+.. ..+.+||||+++++ ++.++|+++.+ +.||.|||.|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccccc
Confidence 57899999999988 77899999999998 67899999987 99999999999998765 356
Q ss_pred cEEEEEEEccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCc
Q 004127 265 PLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHV 312 (772)
Q Consensus 265 ~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 312 (772)
.|.|+|||++..+++++||++.+++.++.. ......||+|....
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~----~~~~~~W~~L~~~~ 122 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQ----AGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccC----CCcccceEecCCcC
Confidence 899999999988899999999999999863 23478999999863
No 186
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.54 E-value=3.4e-15 Score=151.91 Aligned_cols=104 Identities=33% Similarity=0.513 Sum_probs=93.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEecc-CCCceEEEEEEecCCC
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDR-IQASVLEVLVKDKDVV 113 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~~L~i~V~d~~~~ 113 (772)
..|.|+|.+|+||.++|.+|.+||||++++-. .+++|++++.++||+|||+|.|.+.. .....|.|+|||.|+.
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence 48999999999999999999999999999964 46899999999999999999999843 2467899999999998
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 114 -LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
+++|+|+.++.+++|.... ...||.|....
T Consensus 260 sRNDFMGslSFgisEl~K~p------~~GWyKlLsqe 290 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKAP------VDGWYKLLSQE 290 (683)
T ss_pred ccccccceecccHHHHhhcc------hhhHHHHhhhh
Confidence 9999999999999998763 67899998765
No 187
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=3.6e-15 Score=147.62 Aligned_cols=228 Identities=21% Similarity=0.284 Sum_probs=173.5
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEe--c
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSK--D 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v--~ 96 (772)
.|..+|...|+-+.+ .+..+|..|++|++++.++.-|||++..+.. .+.+|++..++.||.|+|+..... .
T Consensus 79 lg~~~~~~~y~~~~~--~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~ 156 (362)
T KOG1013|consen 79 LGALEFELLYDSESR--MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITD 156 (362)
T ss_pred ccchhhhhhhhhhhh--hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceeccccc
Confidence 455677777877666 8899999999999999999999999999985 467899999999999999866653 2
Q ss_pred -cCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC------CCceeeeEEEEEEEeeecC
Q 004127 97 -RIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK------GDKVKTGELMLAVWMGTQA 168 (772)
Q Consensus 97 -~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~------~~~~~~G~l~l~~~~~~~~ 168 (772)
+.....+++.|.|.+.+ .++++|+..+++..+...+. .....|+.-.-+. ..+.+ |+|.+++.+..
T Consensus 157 ~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~r-g~i~isl~~~s-- 230 (362)
T KOG1013|consen 157 DDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEER-GAILISLAYSS-- 230 (362)
T ss_pred chhhhhhhheeeccCcccccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhc-cceeeeeccCc--
Confidence 22346788899998888 88999999999988875532 1222333322221 11223 77777764422
Q ss_pred CCcCCCcCCCCCccCCCCCccccccceeecCceEEEEEEEEEeecCCCCCCCCCCccEEEEEECC-----eeeeeccccC
Q 004127 169 DEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-----QASRTRISPS 243 (772)
Q Consensus 169 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~ 243 (772)
....+.|++++|.+|..+|.++.+||||..++.. .+.+|.+.++
T Consensus 231 -------------------------------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~ 279 (362)
T KOG1013|consen 231 -------------------------------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK 279 (362)
T ss_pred -------------------------------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc
Confidence 2235799999999999999999999999999863 3567888876
Q ss_pred CCCCCceeceeEEEeeCC--CCCcEEEEEEEccCCCCCceeEEEEEeccc
Q 004127 244 KTINPMWNEDLMFVAAEP--FEEPLILTVEDRVAPNKDEVLGKCLIPLQA 291 (772)
Q Consensus 244 ~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~ 291 (772)
+.||.|++.|.|.+... ....+.|.|||++.....+++|-+...+..
T Consensus 280 -t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 280 -TLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR 328 (362)
T ss_pred -cCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence 99999999999988533 355789999999887788899987665443
No 188
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.53 E-value=1.8e-13 Score=125.50 Aligned_cols=116 Identities=24% Similarity=0.361 Sum_probs=95.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCC-C----
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYK-GTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDV-V---- 113 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~-~---- 113 (772)
..|.|.|++|++|++++ +|||.+.+++++ .||+++.++.||.|+|.|.|..... ...|.|.||+.+. .
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcccccc
Confidence 37999999999999865 799999999976 6999999999999999999986543 4679999986543 2
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc--------eeeeEEEEEEEeee
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDK--------VKTGELMLAVWMGT 166 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--------~~~G~l~l~~~~~~ 166 (772)
++.+||.+.|++.++..+ .....||+|.+..+.. ...+.|++++.|..
T Consensus 85 ~~~~IG~V~Ip~~~l~~~-----~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSR-----QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CCcEEEEEEEEHHHhcCC-----CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 579999999999999855 3478999999876542 12278888887754
No 189
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.52 E-value=5e-14 Score=127.25 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=83.3
Q ss_pred EEEEecCCCCCccCCCCCCcCcEEEEEECCE-------EEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCc--
Q 004127 368 GVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-------WVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGH-- 437 (772)
Q Consensus 368 ~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-------~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~-- 437 (772)
..++|++|+.. +..|.+||||+|.+.+. .+||++++++.||+|||.|.|.+.. ..+.|.|+|||++.
T Consensus 5 ~~i~a~~L~~~---d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDK---DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCC---CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 34789999987 66789999999999553 3899999999999999999998653 56789999999996
Q ss_pred --CCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 438 --IHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 438 --~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
.+ ++++||++.++++++..+.....+++|..
T Consensus 82 ~~~~------~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDLS------DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCC------CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 44 89999999999999987766678888843
No 190
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.52 E-value=1.7e-13 Score=124.43 Aligned_cols=97 Identities=24% Similarity=0.394 Sum_probs=81.1
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEEEeecccCCCCCeecceEEEEeeCC----CcEEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-----QKWVRTRTIVDSFGPRWNEQYTWEVFDP----CTVITVGVF 433 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~~P~Wne~~~~~v~~~----~~~l~i~v~ 433 (772)
+.|.|+|++|++|+.. +..+.+||||++.+. ....||++++++.||.|||.|.|..... ...|.|+||
T Consensus 15 ~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 15 SALHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CEEEEEEEEeeCCCCC---CCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 7899999999999987 556889999999872 2368999999999999999999974432 468999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeee
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHS 469 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~ 469 (772)
|++.+ ++++||.+.++++++..++....+
T Consensus 92 d~~~~-------~~~~iG~~~i~l~~l~~~~~~~~~ 120 (123)
T cd04035 92 DEDRF-------GNDFLGETRIPLKKLKPNQTKQFN 120 (123)
T ss_pred EcCCc-------CCeeEEEEEEEcccCCCCcceEee
Confidence 99864 678999999999999887644333
No 191
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.52 E-value=3.1e-14 Score=174.69 Aligned_cols=118 Identities=22% Similarity=0.442 Sum_probs=102.0
Q ss_pred CCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCC--cEEEEEEEeCC
Q 004127 360 PSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPC--TVITVGVFDNG 436 (772)
Q Consensus 360 ~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~--~~l~i~v~D~~ 436 (772)
.-.|.|.|+|++|+||. +..|++||||++.+|++ +.||++++++.||+|||.|+|.+.+|. +.|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~-----~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK-----QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeeccccc-----cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 44699999999999997 33578999999999965 789999999999999999999999865 78999999999
Q ss_pred cCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccE---EEEEEEEe
Q 004127 437 HIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGE---VQLAVRFT 493 (772)
Q Consensus 437 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~f~ 493 (772)
.+ +++.||++.|++.++..++.+..||+|... | +|.|+ |+++++++
T Consensus 2052 ~f-------~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2052 TF-------GKSSLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred cc-------CCCCCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEec
Confidence 87 345999999999999999999999999852 2 34577 88887764
No 192
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.51 E-value=7.3e-14 Score=126.62 Aligned_cols=89 Identities=27% Similarity=0.441 Sum_probs=80.9
Q ss_pred EEEEEEEeecCCCCCCCCCCccEEEEEECCee--eeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCCCCCce
Q 004127 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQA--SRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDEV 281 (772)
Q Consensus 204 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~--~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~ 281 (772)
|+|.|++|++|+..+..+.+||||++.++++. .+|+++++ +.||.|||.|.|.+..+..+.|.|+|||++..++|++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 78999999999999988999999999999865 57777876 9999999999999877777889999999999989999
Q ss_pred eEEEEEeccccc
Q 004127 282 LGKCLIPLQAVQ 293 (772)
Q Consensus 282 iG~~~i~l~~l~ 293 (772)
||++.+++.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999999765
No 193
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.50 E-value=2.4e-13 Score=118.63 Aligned_cols=85 Identities=27% Similarity=0.477 Sum_probs=66.7
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIH 439 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~ 439 (772)
|.|.|++|+||+ +.+||||++.+++ ..+||+++++|+||+|||+|.|++. ....|.+.|||++.-.
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE-GSQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC-CCCEEEEEEEEccccc
Confidence 578999999995 3599999998853 3589999999999999999999986 4779999999984100
Q ss_pred -CCCCCCCCcccEEEEEecC
Q 004127 440 -GQGGGGKDSRIGKVRIRLS 458 (772)
Q Consensus 440 -~~~~~~~~~~lG~~~i~l~ 458 (772)
..+..++|+.+|++.+.|.
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccccCcccEEEEEEEEEC
Confidence 0001238999988777664
No 194
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.50 E-value=1.5e-13 Score=124.17 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=83.3
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCC----C-
Q 004127 46 VVKAKDLPGKDVTGSCDPYVEVKLGNY-------KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDV----V- 113 (772)
Q Consensus 46 v~~a~~L~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~----~- 113 (772)
.++|++|+..+..|.+||||++++.+. ..+|++++++.||+|||+|.|.+.....+.|.|+|||++. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 588999999998899999999999875 3899999999999999999998654446789999999996 6
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
++++||++.+++.++.... ....|++|..
T Consensus 86 ~~d~iG~~~i~l~~l~~~~-----~~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSP-----GQKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCC-----CcEEEEEccC
Confidence 9999999999999998653 2457888843
No 195
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.49 E-value=4.5e-13 Score=122.75 Aligned_cols=117 Identities=20% Similarity=0.347 Sum_probs=93.3
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEE------CCEEEEeecccCCC-CCeecceEEEEeeCCC-cEEEEEEEeC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY------GQKWVRTRTIVDSF-GPRWNEQYTWEVFDPC-TVITVGVFDN 435 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~------~~~~~~T~~~~~t~-~P~Wne~~~~~v~~~~-~~l~i~v~D~ 435 (772)
.|+|+|++|+||+.++. +..+.+||||++++ +...+||+++.++. ||.|||+|.|.+..+. ..|.|+|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 68999999999998731 14678999999999 34568999988776 9999999999998754 5799999998
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
+.. ++++||.+.++++++..+ ..|++|...... ....|.|.+.+++
T Consensus 82 ~~~-------~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~-~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-------DDDFLGQACLPLDSLRQG---YRHVPLLDSKGE-PLELSTLFVHIDI 127 (128)
T ss_pred CCC-------CCcEeEEEEEEhHHhcCc---eEEEEecCCCCC-CCcceeEEEEEEE
Confidence 863 789999999999999766 367888765322 1234788887765
No 196
>PLN03008 Phospholipase D delta
Probab=99.48 E-value=2.9e-13 Score=152.29 Aligned_cols=124 Identities=23% Similarity=0.396 Sum_probs=103.6
Q ss_pred eEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCe-eeee
Q 004127 40 QYLYVRVVKAKDLPGKDV------------------------------------------TGSCDPYVEVKLGNY-KGTT 76 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~------------------------------------------~~~~dpyv~v~~~~~-~~kT 76 (772)
|.|.|+|.+|++|+.+|. .+++||||+|.++++ +.||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 588999999999985221 247899999999886 5699
Q ss_pred eeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCcee-e
Q 004127 77 KHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVK-T 155 (772)
Q Consensus 77 ~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~-~ 155 (772)
++++++.||+|||+|.|.+.++ ...|.|+|||.+.+++++||++.|+|.++..+. ....|++|.+..++... .
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge-----~vd~Wl~Ll~~~~kp~k~~ 167 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGE-----RISGWFPVLGASGKPPKAE 167 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCC-----ceEEEEEccccCCCCCCCC
Confidence 9999999999999999999885 468999999999998899999999999998763 25799999988765321 1
Q ss_pred eEEEEEEEeeecCC
Q 004127 156 GELMLAVWMGTQAD 169 (772)
Q Consensus 156 G~l~l~~~~~~~~d 169 (772)
|+|.+++.|.+-..
T Consensus 168 ~kl~v~lqf~pv~~ 181 (868)
T PLN03008 168 TAIFIDMKFTPFDQ 181 (868)
T ss_pred cEEEEEEEEEEccc
Confidence 79999999987543
No 197
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.48 E-value=2.4e-13 Score=118.66 Aligned_cols=78 Identities=24% Similarity=0.444 Sum_probs=67.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEec------
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDK------ 110 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~------ 110 (772)
|.|+|.+|+||+ +.+||||++.+.+ .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 679999999996 4689999999864 35899999999999999999999974 67999999998
Q ss_pred -CCC-CCceeEEEEEEcc
Q 004127 111 -DVV-LDDLIGRVMFDLN 126 (772)
Q Consensus 111 -~~~-~d~~lG~~~i~l~ 126 (772)
+.. +|+++|.+.+.|.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 344 8999988888775
No 198
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=99.45 E-value=8.8e-13 Score=142.76 Aligned_cols=179 Identities=25% Similarity=0.378 Sum_probs=125.1
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHH---HhhcccccccChhhHHHHHHHHHHHHHccchh---HHHHHHHHHHHHhhcc
Q 004127 559 HMWSMRRSKANFFRIMGVLSSLISVG---KWFDQICNWKNPLTTILIHILFIILVLYPELI---LPTVFLYLFLIGIWNF 632 (772)
Q Consensus 559 ~~~s~~~l~~n~~rl~~~~~~~~~~~---~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l~---~p~~~l~~~~~~~~~~ 632 (772)
+.+|+..+.+|+.||.+.++.++.++ +.+.++++|++|..|..++++|+++|++|.+. +|++++ ++++++..|
T Consensus 1 p~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~l-l~~il~~~y 79 (359)
T PF06398_consen 1 PPLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLL-LFGILLPSY 79 (359)
T ss_pred CCcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45789999999999999999999999 99999999999999999999999999998873 444443 344455555
Q ss_pred ccCCCCCCCCCccCCccccCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----ccccC
Q 004127 633 RWRPRHPPHMDTRLSHAEAAHPDELDEEFDTFPTTKGSDIVRMRYDRLRSIAGRVQTVIGDLATQGERFQS----LISWR 708 (772)
Q Consensus 633 ~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~n----l~~w~ 708 (772)
..+++.+.. .... ...+.+.+.+..|+-.+. -++.+ ..++.+||.|+.+.+.++.+.. .++|+
T Consensus 80 l~~~p~~~~--~~~~-----~~~~~~~~~~~~ptl~~~--s~e~~----~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~ 146 (359)
T PF06398_consen 80 LYRHPSPTS--SLPK-----SYEDHNPEPSEGPTLDKP--SREIV----MNLRDLQNKMEDLSDPYDFLSSFLYPYLNFS 146 (359)
T ss_pred HeecCCCcc--cccc-----cccccCCCcCCCCCcchh--HHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 444422211 0000 000011111111111100 13444 5555699999999999888874 55799
Q ss_pred CchhHHHHHHHHHHHHHHHh----hhhHHHHHHHhhhh-hhcCCccCC
Q 004127 709 DPRATTLFVTFCLIAAIVLY----VTPFQVVALLAGIY-VLRHPRFRH 751 (772)
Q Consensus 709 ~p~~t~~~~~~l~~~~~~~~----~iP~r~i~~~~g~~-~~~~P~~r~ 751 (772)
++..|..++.+|+++.+.++ +||+|++++++|.. .+.||..++
T Consensus 147 ~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 147 DENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 99999998888877777554 58999999999944 788998874
No 199
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.45 E-value=2.2e-13 Score=167.35 Aligned_cols=120 Identities=21% Similarity=0.325 Sum_probs=101.0
Q ss_pred cCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCC-CceEEEEEEecCCC
Q 004127 36 VEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQ-ASVLEVLVKDKDVV 113 (772)
Q Consensus 36 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~-~~~L~i~V~d~~~~ 113 (772)
..-.|.|.|+|++|+||. +..|++||||++++|++ +.||++++++.||+|||.|.|.+.++. .+.|.|+|||+|.+
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 345789999999999998 33689999999999975 889999999999999999999998764 46799999999999
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeE---EEEEEEee
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGE---LMLAVWMG 165 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~---l~l~~~~~ 165 (772)
+++.+|.++|++.++..++. ...||+|.++..+. |. |.+.+.|.
T Consensus 2054 ~kd~~G~~~i~l~~vv~~~~-----~~~~~~L~~~~~k~---G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2054 GKSSLGKVTIQIDRVVMEGT-----YSGEYSLNPESNKD---GSSRTLEIEFQWS 2100 (2102)
T ss_pred CCCCCceEEEEHHHHhcCce-----eeeeeecCcccccC---CCcceEEEEEEec
Confidence 66699999999999986642 67899999642222 66 88887664
No 200
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.44 E-value=4.7e-13 Score=118.93 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=73.5
Q ss_pred EEEEecCCCCCccCCCCCCcCcEEEEEECCE------EEEeecccCCCCCeecceEEEEeeC-----CCcEEEEEEEeCC
Q 004127 368 GVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK------WVRTRTIVDSFGPRWNEQYTWEVFD-----PCTVITVGVFDNG 436 (772)
Q Consensus 368 ~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~------~~~T~~~~~t~~P~Wne~~~~~v~~-----~~~~l~i~v~D~~ 436 (772)
..++|++|+.+ |..|.+||||++++.+. .+||+++++++||+|| .|.|++.+ +...|.|+|||++
T Consensus 5 ~~i~a~~L~~~---d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 5 LQFSGKKLDKK---DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEeCCCCCC---CCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 45699999987 66789999999988432 4899999999999999 68877642 2678999999999
Q ss_pred cCCCCCCCCCCcccEEEEEecCccccCc
Q 004127 437 HIHGQGGGGKDSRIGKVRIRLSTLETDR 464 (772)
Q Consensus 437 ~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 464 (772)
..+ +|++||++.+++.++..++
T Consensus 81 ~~~------~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 81 SSG------KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCC------CCcEEEEEEEEHHHHhcCC
Confidence 865 8999999999999998554
No 201
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=99.40 E-value=3.4e-12 Score=136.90 Aligned_cols=241 Identities=19% Similarity=0.236 Sum_probs=158.2
Q ss_pred eeeeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccC----CCCCceeEEEEEeccccccccCCCCCCceeEEcc
Q 004127 234 QASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVA----PNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLE 309 (772)
Q Consensus 234 ~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~ 309 (772)
+..+|.++.+ .+||.|-+.|...+.....+.++|.++|.+. ....+++|++...++++.... ....-+.++
T Consensus 41 e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~----~~~~~l~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS----GLTGPLLLK 115 (529)
T ss_pred cccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh----hhhhhhhcc
Confidence 3458889987 9999999999999988888999999999774 356789999999999886421 111112222
Q ss_pred cCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCccCCCCCCcCc
Q 004127 310 KHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDA 389 (772)
Q Consensus 310 ~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dp 389 (772)
.. .....|.|.+.+. +. .....+.+ -.++|.+|... |..+++||
T Consensus 116 ~~--------~~~~~g~iti~ae--e~----------------------~~~~~~~~-~~~~~~~ld~k---d~f~ksd~ 159 (529)
T KOG1327|consen 116 PG--------KNAGSGTITISAE--ED----------------------ESDNDVVQ-FSFRAKNLDPK---DFFSKSDP 159 (529)
T ss_pred cC--------ccCCcccEEEEee--cc----------------------cccCceee-eeeeeeecCcc---cccccCCc
Confidence 11 1122455554442 11 11112333 33568999776 88899999
Q ss_pred EEEEEE--C-CEE---EEeecccCCCCCeecceEEEEee-----CCCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecC
Q 004127 390 YCVAKY--G-QKW---VRTRTIVDSFGPRWNEQYTWEVF-----DPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLS 458 (772)
Q Consensus 390 yv~v~~--~-~~~---~~T~~~~~t~~P~Wne~~~~~v~-----~~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~ 458 (772)
|..+.- + +.+ ++|.+++++++|.|.+ |.++.. ++...+.+++||++.-+ ++++||++..++.
T Consensus 160 ~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~------~~~~ig~~~tt~~ 232 (529)
T KOG1327|consen 160 YLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG------KHDLIGKFQTTLS 232 (529)
T ss_pred ceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC------CcCceeEecccHH
Confidence 988844 2 222 7999999999999964 444333 35678999999999854 8899999999999
Q ss_pred ccccCceEeeeEeeeecCCCCc----ccccEEE-------------------EEEEEeecchhHHhhhccCCCCCcc-cc
Q 004127 459 TLETDRVYTHSYPLLVLHPSGV----RKMGEVQ-------------------LAVRFTCSSLINMLHMYSQPLLPKM-HY 514 (772)
Q Consensus 459 ~l~~~~~~~~~~~L~~~~~~g~----~~~G~i~-------------------l~~~f~~~~~~~~~~~~~~p~~p~~-~y 514 (772)
++.... -...+++.+...+.. +..|.+. ..+.|+ .++++.++++.|..|.| ||
T Consensus 233 ~~~~~~-~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~--vgIDfTaSNg~p~~~sSLHy 309 (529)
T KOG1327|consen 233 ELQEPG-SPNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFT--VGIDFTASNGDPRNPSSLHY 309 (529)
T ss_pred HhcccC-CcccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeE--EEEEEeccCCCCCCCCccee
Confidence 986311 122233333221111 1134432 111111 13445556669999989 99
Q ss_pred CCCCChhHHHH
Q 004127 515 IHPLSVIQLDS 525 (772)
Q Consensus 515 ~~~~~~~~~~~ 525 (772)
++|..+++|++
T Consensus 310 i~p~~~N~Y~~ 320 (529)
T KOG1327|consen 310 IDPHQPNPYEQ 320 (529)
T ss_pred cCCCCCCHHHH
Confidence 99999999986
No 202
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.40 E-value=1.6e-12 Score=115.47 Aligned_cols=86 Identities=27% Similarity=0.390 Sum_probs=75.0
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEECCe------eeeeeeecCCCCCeeccEEEEEeccCC----CceEEEEEEecCCC-
Q 004127 45 RVVKAKDLPGKDVTGSCDPYVEVKLGNY------KGTTKHFEKKSNPEWNQCFAFSKDRIQ----ASVLEVLVKDKDVV- 113 (772)
Q Consensus 45 ~v~~a~~L~~~~~~~~~dpyv~v~~~~~------~~kT~~~~~t~nP~Wne~f~f~v~~~~----~~~L~i~V~d~~~~- 113 (772)
-.++|++|+..+..+.+||||++++.++ .++|++++++.||+|| .|.|.+.++. ...|.|+|||++..
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 3679999999999999999999998653 5899999999999999 7888764332 57899999999998
Q ss_pred CCceeEEEEEEccccCCC
Q 004127 114 LDDLIGRVMFDLNEVPKR 131 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~ 131 (772)
+|++||++.+++.++...
T Consensus 84 ~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 84 KHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCcEEEEEEEEHHHHhcC
Confidence 999999999999999844
No 203
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.38 E-value=1.9e-12 Score=109.04 Aligned_cols=81 Identities=42% Similarity=0.592 Sum_probs=74.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCce
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN---YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~ 117 (772)
|.|+|++|+||+..+..+.+||||++.+++ ...+|++++++.||.|+|+|.|.+.....+.|.|+|||.+.. +|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999998 569999999999999999999998666667799999999998 7999
Q ss_pred eEEEE
Q 004127 118 IGRVM 122 (772)
Q Consensus 118 lG~~~ 122 (772)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 204
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.8e-13 Score=134.34 Aligned_cols=222 Identities=16% Similarity=0.215 Sum_probs=162.1
Q ss_pred eEEEEEEEEEeecCCCCCCCCCCccEEEEEECC-----eeeeeccccCCCCCCceeceeEEEe--eCCC-CCcEEEEEEE
Q 004127 201 LWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-----QASRTRISPSKTINPMWNEDLMFVA--AEPF-EEPLILTVED 272 (772)
Q Consensus 201 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~~--~~~~-~~~l~i~V~d 272 (772)
...+..++..|++|.+++.++..|||++..++. .+.+|++..+ ++||.|+|+-.+.. .+.. ...+++.|.|
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd 170 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCD 170 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeecc
Confidence 345789999999999999999999999999873 3578888876 99999998755433 3222 3468889999
Q ss_pred ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCc
Q 004127 273 RVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRP 352 (772)
Q Consensus 273 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p 352 (772)
.+.+...+++|+..+.+..+..++ ......|+.-..+.+..+ .......|.+.+++..+
T Consensus 171 n~~~~~~~sqGq~r~~lkKl~p~q--~k~f~~cl~~~lp~~rad-~~~~E~rg~i~isl~~~------------------ 229 (362)
T KOG1013|consen 171 NDKKTHNESQGQSRVSLKKLKPLQ--RKSFNICLEKSLPSERAD-RDEDEERGAILISLAYS------------------ 229 (362)
T ss_pred CcccccccCcccchhhhhccChhh--cchhhhhhhccCCccccc-ccchhhccceeeeeccC------------------
Confidence 999989999999998888876532 233445554333311001 11123456665554321
Q ss_pred cccccccCCccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeC---C
Q 004127 353 TAKQLWKPSIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFD---P 424 (772)
Q Consensus 353 ~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~---~ 424 (772)
.....+.|.+++|..|..+ |.+|-+||||..++.. .+.||.+.++|++|.||+.|.|.+.. .
T Consensus 230 -------s~~~~l~vt~iRc~~l~ss---Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa 299 (362)
T KOG1013|consen 230 -------STTPGLIVTIIRCSHLASS---DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLA 299 (362)
T ss_pred -------cCCCceEEEEEEeeeeecc---ccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchh
Confidence 1224677899999999998 6779999999998843 23799999999999999999998874 2
Q ss_pred CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcc
Q 004127 425 CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 425 ~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l 460 (772)
...+.|.|+|++.- ...+++|-+...+...
T Consensus 300 ~~kv~lsvgd~~~G------~s~d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 300 YKKVALSVGDYDIG------KSNDSIGGSMLGGYRR 329 (362)
T ss_pred cceEEEeecccCCC------cCccCCCccccccccc
Confidence 56799999998862 2778888877665543
No 205
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1e-12 Score=139.37 Aligned_cols=121 Identities=30% Similarity=0.558 Sum_probs=106.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCC--------
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDV-------- 112 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~-------- 112 (772)
.+.++|+.|++|.++|..|++||||.+.++..+.||+++...+||+|||.|.|...+ .++.+++.|||.|.
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~dlksklrq 374 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDNDLKSKLRQ 374 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCcccHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999987 47899999999875
Q ss_pred -C---CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCc-eeeeEEEEEEEeeecCCC
Q 004127 113 -V---LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDK-VKTGELMLAVWMGTQADE 170 (772)
Q Consensus 113 -~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~~~~d~ 170 (772)
+ .|+|+|+..|.+..|..+ .+.||+|+....+. +. |-|++.+++...+++
T Consensus 375 kl~resddflgqtvievrtlsge-------mdvwynlekrtdksavs-gairlhisveikgee 429 (1283)
T KOG1011|consen 375 KLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVS-GAIRLHISVEIKGEE 429 (1283)
T ss_pred HhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhcc-ceEEEEEEEEEcCcc
Confidence 1 799999999999988543 67899999876554 45 999999988765543
No 206
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.2e-12 Score=138.77 Aligned_cols=124 Identities=28% Similarity=0.437 Sum_probs=103.3
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~ 442 (772)
..+.++|++|+||.+. |..|++||||.+.+|..+.||+++-..+||+|||.|.|++.+..+.|.+.|||+|.--...
T Consensus 295 akitltvlcaqgl~ak---dktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAK---DKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred eeeEEeeeecccceec---ccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHH
Confidence 6889999999999987 7789999999999999999999999999999999999999999999999999988521000
Q ss_pred -----CCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 443 -----GGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 443 -----~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
.+++|+|||+..|.+..+... +..||.|.....+.. -+|.|++.|.+
T Consensus 372 lrqkl~resddflgqtvievrtlsge--mdvwynlekrtdksa-vsgairlhisv 423 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDKSA-VSGAIRLHISV 423 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecccc--hhhhcchhhccchhh-ccceEEEEEEE
Confidence 167899999999999988654 488999976543333 35777766654
No 207
>PLN02270 phospholipase D alpha
Probab=99.28 E-value=2.5e-11 Score=136.94 Aligned_cols=128 Identities=17% Similarity=0.242 Sum_probs=108.5
Q ss_pred cEEEEEEEEecCCCCCcc---------------CCCCCCcCcEEEEEECCEE-EEeecccCC-CCCeecceEEEEeeCCC
Q 004127 363 GILELGVLSAHGLTPMKT---------------KDGRGTTDAYCVAKYGQKW-VRTRTIVDS-FGPRWNEQYTWEVFDPC 425 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~---------------~~~~g~~dpyv~v~~~~~~-~~T~~~~~t-~~P~Wne~~~~~v~~~~ 425 (772)
|.|.++|++|++|++++- ....+.+||||.|.+++.+ .||+++.+. .||+|||.|.+++..+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 889999999999986310 0224678999999998876 699999884 69999999999999999
Q ss_pred cEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEeecch
Q 004127 426 TVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCSSL 497 (772)
Q Consensus 426 ~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~ 497 (772)
..+.|.|.|.|.+ +..+||.+.||+.++..|..+++|+++.+...+..+...+|+++++|.+...
T Consensus 88 ~~v~f~vkd~~~~-------g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 88 SNIIFTVKDDNPI-------GATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred ceEEEEEecCCcc-------CceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 9999999999988 5679999999999999999999999998875444444458999999998654
No 208
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.28 E-value=1.7e-11 Score=103.11 Aligned_cols=82 Identities=28% Similarity=0.496 Sum_probs=74.7
Q ss_pred EEEEEEEeecCCCCCCCCCCccEEEEEECC---eeeeeccccCCCCCCceeceeEEEeeCCCCCcEEEEEEEccCCCCCc
Q 004127 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGN---QASRTRISPSKTINPMWNEDLMFVAAEPFEEPLILTVEDRVAPNKDE 280 (772)
Q Consensus 204 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~ 280 (772)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.+ +.+|.|+|.|.|.+..+..+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999987 6799999987 899999999999987777777999999999988899
Q ss_pred eeEEEE
Q 004127 281 VLGKCL 286 (772)
Q Consensus 281 ~iG~~~ 286 (772)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 209
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.17 E-value=2.4e-10 Score=99.05 Aligned_cols=99 Identities=39% Similarity=0.613 Sum_probs=85.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCceeE
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLIG 119 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~lG 119 (772)
|.|+|++|++|......+.++|||.+.+.+ ...+|+++.++.||.|||.|.|.+.......|.|+|||.+.. ++.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 578999999998866677899999999998 889999999999999999999999875578899999999987 689999
Q ss_pred EEEEEccccC-CCCCCCCCCCCeEEEe
Q 004127 120 RVMFDLNEVP-KRIPPDSPLAPQWYRL 145 (772)
Q Consensus 120 ~~~i~l~~l~-~~~~~~~~~~~~w~~L 145 (772)
.+.+++.++. .. .....|++|
T Consensus 81 ~~~~~l~~l~~~~-----~~~~~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSG-----KEGELWLPL 102 (102)
T ss_pred EEEEeHHHhhhcC-----CcCcceecC
Confidence 9999999997 22 224567764
No 210
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.15 E-value=2e-10 Score=99.52 Aligned_cols=99 Identities=30% Similarity=0.535 Sum_probs=84.3
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-EEEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCcCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-KWVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGHIHGQG 442 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~~~~~ 442 (772)
+.|.|++|++|... ...+..+|||++.+.+ ..++|+++.++.||.||+.|.|.+.. ....|.|+|||++..+
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 46889999999875 3456799999999987 88999999999999999999999998 6788999999998753
Q ss_pred CCCCCcccEEEEEecCccc-cCceEeeeEee
Q 004127 443 GGGKDSRIGKVRIRLSTLE-TDRVYTHSYPL 472 (772)
Q Consensus 443 ~~~~~~~lG~~~i~l~~l~-~~~~~~~~~~L 472 (772)
.+.+||.+.+++.++. .......|++|
T Consensus 75 ---~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 ---KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ---CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999987 55555666654
No 211
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.15 E-value=3.5e-10 Score=98.19 Aligned_cols=90 Identities=39% Similarity=0.616 Sum_probs=81.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCce
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY---KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDL 117 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~---~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~ 117 (772)
|.|+|++|++|......+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+.. .+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 7899999999998776578999999999975 79999999999999999999999876578999999999877 7999
Q ss_pred eEEEEEEccccCCC
Q 004127 118 IGRVMFDLNEVPKR 131 (772)
Q Consensus 118 lG~~~i~l~~l~~~ 131 (772)
+|.+.+++.++..+
T Consensus 82 ~G~~~~~l~~~~~~ 95 (101)
T smart00239 82 IGQVTIPLSDLLLG 95 (101)
T ss_pred eEEEEEEHHHcccC
Confidence 99999999998765
No 212
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.13 E-value=3.7e-10 Score=98.07 Aligned_cols=91 Identities=29% Similarity=0.530 Sum_probs=79.0
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE---EEEeecccCCCCCeecceEEEEeeCC-CcEEEEEEEeCCcCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK---WVRTRTIVDSFGPRWNEQYTWEVFDP-CTVITVGVFDNGHIHG 440 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~---~~~T~~~~~t~~P~Wne~~~~~v~~~-~~~l~i~v~D~~~~~~ 440 (772)
+.|.|++|++|... ...+..+|||++++++. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~---~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKK---DKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCC---CCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 67899999999875 33357999999999765 79999999999999999999999987 889999999988643
Q ss_pred CCCCCCCcccEEEEEecCccccCc
Q 004127 441 QGGGGKDSRIGKVRIRLSTLETDR 464 (772)
Q Consensus 441 ~~~~~~~~~lG~~~i~l~~l~~~~ 464 (772)
.+.++|.+.+++.++..+.
T Consensus 78 -----~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 -----RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred -----CCceeEEEEEEHHHcccCc
Confidence 6899999999999987654
No 213
>PLN02223 phosphoinositide phospholipase C
Probab=99.12 E-value=5.9e-10 Score=121.18 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=94.9
Q ss_pred eEEEEEEEEeecCCCC-----CCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEe
Q 004127 40 QYLYVRVVKAKDLPGK-----DVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKD 109 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~-----~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d 109 (772)
..|.|+|+.|++++.. +....+||||+|.+.| .+.+|++..++.||+|||+|.|.+..+.-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 4799999999987521 2234689999999987 25678777888999999999999988777889999999
Q ss_pred cCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 110 KDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 110 ~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
+|.. +|+++|+..+++..|..+ -++++|.+..|.......|.+++.+
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~G--------yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEG--------IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCC--------ceeEeccCCCcCCCCCceEEEEEEe
Confidence 9987 899999999999999766 3677999888876443667666644
No 214
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.11 E-value=4.9e-10 Score=100.94 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=76.8
Q ss_pred EEEEEEEecCCCCCccCCCCC--CcCcEEEEEECC---EEEEeecccCCCC--CeecceEEEEeeCC-------------
Q 004127 365 LELGVLSAHGLTPMKTKDGRG--TTDAYCVAKYGQ---KWVRTRTIVDSFG--PRWNEQYTWEVFDP------------- 424 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g--~~dpyv~v~~~~---~~~~T~~~~~t~~--P~Wne~~~~~v~~~------------- 424 (772)
|+|.|.+|+|++..+. +..| .+||||++.+.+ .+.+|.+..+++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~-~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCccccc-ccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 7899999999775432 2245 499999999854 5689999999999 99999999987641
Q ss_pred -----------CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCc
Q 004127 425 -----------CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDR 464 (772)
Q Consensus 425 -----------~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~ 464 (772)
...|.++|||.|.++ +|++||.+.++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFS------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccC------CCCcceEEEEEhhhccccc
Confidence 356999999999976 8999999999999987654
No 215
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.08 E-value=8.4e-10 Score=99.44 Aligned_cols=90 Identities=30% Similarity=0.384 Sum_probs=77.0
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEECC---eeeeeeeecCCCC--CeeccEEEEEecc---------------
Q 004127 42 LYVRVVKAKDLPGKD--VTG--SCDPYVEVKLGN---YKGTTKHFEKKSN--PEWNQCFAFSKDR--------------- 97 (772)
Q Consensus 42 L~V~v~~a~~L~~~~--~~~--~~dpyv~v~~~~---~~~kT~~~~~t~n--P~Wne~f~f~v~~--------------- 97 (772)
|+|.|.+|+|++..+ ..| .+||||++.+.+ .+++|.+.+++.| |+||+.|.|++.-
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999976543 355 499999999986 4689999999999 9999999998743
Q ss_pred --------CCCceEEEEEEecCCC-CCceeEEEEEEccccCCC
Q 004127 98 --------IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKR 131 (772)
Q Consensus 98 --------~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~ 131 (772)
.....|.++|||.|.+ +|++||++.++|..+...
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 2246899999999999 999999999999988765
No 216
>PLN02270 phospholipase D alpha
Probab=99.05 E-value=1.8e-09 Score=122.29 Aligned_cols=123 Identities=20% Similarity=0.334 Sum_probs=102.4
Q ss_pred eEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECC-eeeeeeeecCC-CCCeeccEEEEEeccCC
Q 004127 40 QYLYVRVVKAKDLPGKD------------------VTGSCDPYVEVKLGN-YKGTTKHFEKK-SNPEWNQCFAFSKDRIQ 99 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~------------------~~~~~dpyv~v~~~~-~~~kT~~~~~t-~nP~Wne~f~f~v~~~~ 99 (772)
|.|.|+|.+|++|++.+ ..+++||||.|.+++ ...||+++.+. .||.|+|.|.+.+...
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~- 86 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM- 86 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC-
Confidence 68999999999998631 135789999999998 56899999875 5999999999999875
Q ss_pred CceEEEEEEecCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceee-eEEEEEEEeeecC
Q 004127 100 ASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKT-GELMLAVWMGTQA 168 (772)
Q Consensus 100 ~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~-G~l~l~~~~~~~~ 168 (772)
...+.|.|+|.+.+...+||.+.+++.++..+. ....||++.+..|+.... ..|.+++.|.+..
T Consensus 87 ~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~-----~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 87 ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGE-----EVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred cceEEEEEecCCccCceEEEEEEEEHHHhcCCC-----ccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 478999999999998889999999999998774 378999999887765431 4788888887643
No 217
>PLN02952 phosphoinositide phospholipase C
Probab=99.01 E-value=3e-09 Score=118.42 Aligned_cols=117 Identities=25% Similarity=0.348 Sum_probs=93.6
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEE
Q 004127 40 QYLYVRVVKAKDLPGK------DVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVK 108 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~------~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~ 108 (772)
..|.|+|+.|.+++.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..+.-..|+|+|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 4799999999987532 1123459999999976 4679999999999999999999988766678999999
Q ss_pred ecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 109 DKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 109 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
|+|.. +++++|++.+++..|..+ .+|++|.+..|.......|.+++.+
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~G--------yR~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPG--------IRSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCC--------ceeEeCcCCCCCCCCCEEEEEEEEe
Confidence 99987 899999999999999866 3689999888766432455555543
No 218
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.98 E-value=1.7e-09 Score=90.85 Aligned_cols=84 Identities=23% Similarity=0.391 Sum_probs=73.3
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCce
Q 004127 42 LYVRVVKAKDLPGKD---VTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDL 117 (772)
Q Consensus 42 L~V~v~~a~~L~~~~---~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~ 117 (772)
|.|+|..|+|+.-.+ ..+.+||||.+++++. +.||++ +.||.|||+|.|.+.. ...+.+.|||......-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGGDQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCCCeecc
Confidence 679999999998776 5788999999999995 889987 5899999999999953 788999999997667778
Q ss_pred eEEEEEEccccCC
Q 004127 118 IGRVMFDLNEVPK 130 (772)
Q Consensus 118 lG~~~i~l~~l~~ 130 (772)
+|..-+.+.++..
T Consensus 76 i~llW~~~sdi~E 88 (109)
T cd08689 76 VGLLWLRLSDIAE 88 (109)
T ss_pred eeeehhhHHHHHH
Confidence 9999999998864
No 219
>PLN02223 phosphoinositide phospholipase C
Probab=98.96 E-value=7.3e-09 Score=112.79 Aligned_cols=104 Identities=21% Similarity=0.315 Sum_probs=83.6
Q ss_pred cEEEEEEEEecCCCCC--ccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCCC-cEEEEEEEe
Q 004127 363 GILELGVLSAHGLTPM--KTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDPC-TVITVGVFD 434 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~--~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~~-~~l~i~v~D 434 (772)
..|.|+|+.|++++.. +..+.....||||+|.+.| ...+|.+..++.||+|||+|.|.+..|. ..|.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999998521 1112235689999998844 3468877778999999999999998875 579999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
+|..+ +++++|+..+|++.|..|- +..+|.+.
T Consensus 489 ~D~~~------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~ 520 (537)
T PLN02223 489 YEVST------ADAFCGQTCLPVSELIEGI---RAVPLYDE 520 (537)
T ss_pred cCCCC------CCcEEEEEecchHHhcCCc---eeEeccCC
Confidence 99754 8999999999999999884 67788764
No 220
>PLN02952 phosphoinositide phospholipase C
Probab=98.94 E-value=1e-08 Score=114.18 Aligned_cols=120 Identities=24% Similarity=0.310 Sum_probs=92.8
Q ss_pred ccEEEEEEEEecCCCCCc---cCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCCC-cEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMK---TKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDPC-TVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~---~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~~-~~l~i~v 432 (772)
...|.|+|+.|++++... ..+.....||||+|.+-| ...||+++.++.||+|||+|.|.+..|. ..+.|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 357999999999985321 112234469999998833 4579999999999999999999998764 6799999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
+|+|..+ .++++|+..+|++.|..|- +|.+|.+.. |. ..+..+|-++|.
T Consensus 549 ~D~D~~~------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G~-~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE------KDDFGGQTCLPVSELRPGI---RSVPLHDKK--GE-KLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC------CCCeEEEEEcchhHhcCCc---eeEeCcCCC--CC-CCCCEEEEEEEE
Confidence 9998854 8999999999999999985 588997543 32 335567667664
No 221
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.93 E-value=6.3e-09 Score=115.67 Aligned_cols=117 Identities=24% Similarity=0.282 Sum_probs=94.9
Q ss_pred eEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEE
Q 004127 40 QYLYVRVVKAKDLPGK------DVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVK 108 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~------~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~ 108 (772)
..|.|+|+.+.+++.. +.....||||+|.+-| .+.+|++..++.||+|||+|.|.+..+.-..|+|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 4799999999987521 2233579999999976 3578998889999999999999998776789999999
Q ss_pred ecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 109 DKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 109 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
|++.. +|+|+|+..+++..|..+ -+.++|.+..|.......|.+++.+
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~G--------yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQG--------IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCc--------cceEeccCCCcCCCCCCeeEEEEEe
Confidence 99987 999999999999999765 2466998888876443667776654
No 222
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.90 E-value=5.3e-09 Score=87.93 Aligned_cols=86 Identities=24% Similarity=0.378 Sum_probs=72.1
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCC
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGG 443 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~ 443 (772)
|.|.|..|+|+....+....+.+||||.|++++. ++||++ +.||.|||.|.|+| +....+.+.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~------ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGG------ 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCC------
Confidence 5688999999987643225678999999999887 789998 48999999999999 668899999999753
Q ss_pred CCCCcccEEEEEecCccc
Q 004127 444 GGKDSRIGKVRIRLSTLE 461 (772)
Q Consensus 444 ~~~~~~lG~~~i~l~~l~ 461 (772)
+..-.||-.-+.+++|.
T Consensus 71 -~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 -DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred -CeecceeeehhhHHHHH
Confidence 36678999999999984
No 223
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.90 E-value=1.4e-08 Score=112.71 Aligned_cols=117 Identities=24% Similarity=0.342 Sum_probs=93.6
Q ss_pred eEEEEEEEEeecCC--CC----CCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEE
Q 004127 40 QYLYVRVVKAKDLP--GK----DVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVK 108 (772)
Q Consensus 40 ~~L~V~v~~a~~L~--~~----~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~ 108 (772)
..|.|+|+.|.+++ .. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..+.-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 47999999998753 11 2234579999999975 4679999999899999999999987766689999999
Q ss_pred ecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 109 DKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 109 d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
|+|.. +|+++|+..+++..|..+ -+.++|.+..|.......|.+.+.+
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~G--------yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQG--------IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCc--------cceEEccCCCcCCCCCeeEEEEEEe
Confidence 99887 899999999999999766 2466998888776443566666643
No 224
>PLN02228 Phosphoinositide phospholipase C
Probab=98.87 E-value=1.9e-08 Score=111.42 Aligned_cols=118 Identities=22% Similarity=0.269 Sum_probs=96.3
Q ss_pred eEEEEEEEEeecCCC---C---CCCCCCCcEEEEEECC-----eeeeeeeecCCCCCee-ccEEEEEeccCCCceEEEEE
Q 004127 40 QYLYVRVVKAKDLPG---K---DVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEW-NQCFAFSKDRIQASVLEVLV 107 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~---~---~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~W-ne~f~f~v~~~~~~~L~i~V 107 (772)
..|.|+|+.|++|+. . +.....||||+|.+-+ .+.+|+++.++.||+| ||+|.|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 379999999998732 1 1223479999999975 3579999988899999 99999999776668999999
Q ss_pred EecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 108 KDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 108 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
+|++.. .|+++|+..+++..|..+ -+.++|.+..|+....++|.+++.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~G--------YR~VpL~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSG--------VRAVRLHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCC--------eeEEEccCCCCCCCCCeEEEEEEEEc
Confidence 999877 899999999999999765 35679999888875447788888764
No 225
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.87 E-value=1e-08 Score=108.27 Aligned_cols=120 Identities=25% Similarity=0.444 Sum_probs=100.6
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecc-eEEEEeeCC---CcEEEEEEEeCCcC
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNE-QYTWEVFDP---CTVITVGVFDNGHI 438 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne-~~~~~v~~~---~~~l~i~v~D~~~~ 438 (772)
|.+-|+|..|++||.||.. ....|.||.|++++..+||.+-.+++||.||. -|.|+|.|. ...|.|.++|+|..
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7788999999999999543 45689999999999999999999999999995 599999873 56899999999998
Q ss_pred CCCCCCCCCcccEEEEEecCccc----------cCceEeeeEeeeecCCCCcccccEEEEEEEEe
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLE----------TDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFT 493 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 493 (772)
+ .++.||++.|++..|. .|..+..|+|+.+.- .| ..|+|.+-+++.
T Consensus 81 s------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hg--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HG--IRGEINVIVKVD 136 (1169)
T ss_pred c------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-cc--ccceeEEEEEEe
Confidence 7 8999999999999872 356789999997631 12 358888777764
No 226
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.82 E-value=2.4e-08 Score=110.78 Aligned_cols=121 Identities=20% Similarity=0.348 Sum_probs=96.6
Q ss_pred CceeEEEEEEEEeecCCCC-C---CCCCCCcEEEEEECC-----eeeeeeee-cCCCCCeeccEEEEEeccCCCceEEEE
Q 004127 37 EQMQYLYVRVVKAKDLPGK-D---VTGSCDPYVEVKLGN-----YKGTTKHF-EKKSNPEWNQCFAFSKDRIQASVLEVL 106 (772)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~-~---~~~~~dpyv~v~~~~-----~~~kT~~~-~~t~nP~Wne~f~f~v~~~~~~~L~i~ 106 (772)
+..-.|.|.|+.+.+.+.. + .+..+||||.|.+-| ...+|+++ .++-||.|+|+|.|.+..+.-..|+|.
T Consensus 613 ~~~~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~ 692 (746)
T KOG0169|consen 613 PVKKTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFE 692 (746)
T ss_pred CCCceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEE
Confidence 3334899999999976543 2 235689999999987 35789955 667799999999999988777899999
Q ss_pred EEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 107 VKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 107 V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
|+|++.. +|+|+|+.++++..|..+- +-++|.+..|+.....+|.+.+.+.
T Consensus 693 V~d~d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 693 VHDYDYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred EEecCCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEEe
Confidence 9999999 8999999999999998662 3458988888764447777777653
No 227
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.81 E-value=1.5e-09 Score=117.55 Aligned_cols=128 Identities=30% Similarity=0.530 Sum_probs=107.4
Q ss_pred CcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------e------------------eeeeeeecCCC
Q 004127 35 LVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-------------Y------------------KGTTKHFEKKS 83 (772)
Q Consensus 35 ~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------------~------------------~~kT~~~~~t~ 83 (772)
...+...|.|.+.+|+||.++|.+|-+|||+...+.. + .+-|.++++|+
T Consensus 109 ~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TL 188 (1103)
T KOG1328|consen 109 NKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTL 188 (1103)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccC
Confidence 3456677889999999999999999999999887632 0 02478889999
Q ss_pred CCeeccEEEEEeccCCCceEEEEEEecCC------------------------------------C-CCceeEEEEEEcc
Q 004127 84 NPEWNQCFAFSKDRIQASVLEVLVKDKDV------------------------------------V-LDDLIGRVMFDLN 126 (772)
Q Consensus 84 nP~Wne~f~f~v~~~~~~~L~i~V~d~~~------------------------------------~-~d~~lG~~~i~l~ 126 (772)
||.|+|.|.|.+++.+++.+.+.+||+|. . .|||+|++.|+|.
T Consensus 189 nPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 189 NPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred CcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 99999999999999999999999999974 1 4899999999999
Q ss_pred ccCCCCCCCCCCCCeEEEeecCCCC-ceeeeEEEEEEEeeecCC
Q 004127 127 EVPKRIPPDSPLAPQWYRLEDRKGD-KVKTGELMLAVWMGTQAD 169 (772)
Q Consensus 127 ~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~~~~d 169 (772)
++... ..++||.|+..+.. +++ |.+.+.+|+.+..+
T Consensus 269 EiP~~------Gld~WFkLepRS~~S~Vq-G~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 269 EIPPD------GLDQWFKLEPRSDKSKVQ-GQVKLKLWLSTKEE 305 (1103)
T ss_pred cCCcc------hHHHHhccCccccccccc-ceEEEEEEEeeecc
Confidence 99644 36899999998755 466 99999999987544
No 228
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.80 E-value=5.9e-08 Score=104.74 Aligned_cols=180 Identities=18% Similarity=0.215 Sum_probs=128.9
Q ss_pred eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-----CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 73 KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-----LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 73 ~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
..+|.++.+.+||.|.+.|.+.......+.|++.++|.+.. ..+|+|++...+.++....... . +|..
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~-----~--~l~~ 114 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT-----G--PLLL 114 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh-----h--hhhc
Confidence 45899999999999999998887655679999999998653 7789999999999998653211 1 2222
Q ss_pred CCCCceeeeEEEEEEEeeecCCCcCCCcCCCCCccCCCCCccccccceeecCceEEEEEEEEEeecCCCCCCCCCCccEE
Q 004127 148 RKGDKVKTGELMLAVWMGTQADEAFPDAWHSDAATVSGEGVANIRSKVYLSPKLWYVRVNIIEAQDLLPSDKSRFPEVFV 227 (772)
Q Consensus 148 ~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv 227 (772)
+.+.....|+|.+.+.-.... . ....-..+|++|..+|..+++|||.
T Consensus 115 ~~~~~~~~g~iti~aee~~~~--------------------------------~-~~~~~~~~~~~ld~kd~f~ksd~~l 161 (529)
T KOG1327|consen 115 KPGKNAGSGTITISAEEDESD--------------------------------N-DVVQFSFRAKNLDPKDFFSKSDPYL 161 (529)
T ss_pred ccCccCCcccEEEEeeccccc--------------------------------C-ceeeeeeeeeecCcccccccCCcce
Confidence 211111127776665211000 0 1122234689999999999999999
Q ss_pred EEEEC--C----eeeeeccccCCCCCCceeceeEEEeeC----CCCCcEEEEEEEccCCCCCceeEEEEEecccccc
Q 004127 228 KAILG--N----QASRTRISPSKTINPMWNEDLMFVAAE----PFEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQR 294 (772)
Q Consensus 228 ~v~l~--~----~~~kT~~~~~~t~nP~wne~f~f~~~~----~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 294 (772)
.++-. . ..++|+++++ +++|.|... ...... .....+.+.+||++..+++++||.+..++.++..
T Consensus 162 ~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 162 EFYKRVDDGSTQMLYRTEVVKN-TLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred EEEEecCCCceeeccccceecc-CCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 98643 2 4688999988 999999873 333322 2245789999999999999999999999998863
No 229
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.77 E-value=6.4e-08 Score=107.74 Aligned_cols=104 Identities=19% Similarity=0.280 Sum_probs=83.5
Q ss_pred cEEEEEEEEecCCCCCcc---CCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCCC-cEEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKT---KDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDPC-TVITVGVF 433 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~---~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~~-~~l~i~v~ 433 (772)
..|.|+|+.+++++.... .+.....||||+|.+-| ...||++..++.||+|||+|.|++..|. ..|+|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 579999999998753211 12334579999998832 3479998889999999999999998874 78999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|+|..+ +++++|+..||+..|..|- +..+|.+.
T Consensus 549 d~d~~~------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~ 581 (598)
T PLN02230 549 EHDINE------KDDFGGQTCLPVSEIRQGI---HAVPLFNR 581 (598)
T ss_pred ECCCCC------CCCEEEEEEcchHHhhCcc---ceEeccCC
Confidence 998754 8999999999999999884 56677654
No 230
>PLN02228 Phosphoinositide phospholipase C
Probab=98.77 E-value=8.2e-08 Score=106.47 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=91.6
Q ss_pred cEEEEEEEEecCCCC---CccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCee-cceEEEEeeCCC-cEEEEEE
Q 004127 363 GILELGVLSAHGLTP---MKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRW-NEQYTWEVFDPC-TVITVGV 432 (772)
Q Consensus 363 g~l~v~v~~a~~L~~---~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~W-ne~~~~~v~~~~-~~l~i~v 432 (772)
..|.|+|+.|++|+. .+..+.....||||+|.+.+ ..+||+++.++.||+| ||.|.|.+..|. ..|.|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 579999999998732 11112234589999998832 3579999999999999 999999998864 7899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcc-cccEEEEEEEEee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVR-KMGEVQLAVRFTC 494 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f~~ 494 (772)
+|+|..+ .++++|+..|+++.|..|- +..+|.+.. |.. ...++-+.+.+.+
T Consensus 511 ~D~d~~~------~d~figq~~lPv~~Lr~GY---R~VpL~~~~--G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDT------QNDFAGQTCLPLPELKSGV---RAVRLHDRA--GKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCC------CCCEEEEEEcchhHhhCCe---eEEEccCCC--CCCCCCeEEEEEEEEcC
Confidence 9998754 8899999999999998873 566886543 332 2355666666644
No 231
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.76 E-value=9.3e-08 Score=106.32 Aligned_cols=104 Identities=18% Similarity=0.278 Sum_probs=83.2
Q ss_pred cEEEEEEEEecCCCC--Cc-cCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEeeCCC-cEEEEEEE
Q 004127 363 GILELGVLSAHGLTP--MK-TKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVFDPC-TVITVGVF 433 (772)
Q Consensus 363 g~l~v~v~~a~~L~~--~~-~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~~~~-~~l~i~v~ 433 (772)
..|.|+|+.+++++. .+ ..+.....||||+|.+.| ...||+++.++.||+|||.|.|.+..|. ..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 579999999998531 11 112344589999998842 4579999999999999999999998774 78999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
|+|..+ .+++||+..+|+..|..|- +..+|.+.
T Consensus 532 d~D~~~------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~ 564 (581)
T PLN02222 532 EYDMSE------KDDFGGQTCLPVWELSQGI---RAFPLHSR 564 (581)
T ss_pred ECCCCC------CCcEEEEEEcchhhhhCcc---ceEEccCC
Confidence 998754 8999999999999999883 56677654
No 232
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=98.75 E-value=7.6e-09 Score=94.60 Aligned_cols=102 Identities=18% Similarity=0.274 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCCChhHHHHhhccC----CCcccchh--hhHHHHHHHHHHHHHHHHHHHhhccccccc
Q 004127 521 IQLDSLRHQAMQIVSIRLNRAEPPLRKEVVEYMLDV----DSHMWSMR--RSKANFFRIMGVLSSLISVGKWFDQICNWK 594 (772)
Q Consensus 521 ~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~s~~--~l~~n~~rl~~~~~~~~~~~~~i~~l~~W~ 594 (772)
.+++..|+++..++..+++++|...++|+.||++.. +.+.++++ ++++-..|++.+++.+.+.+++++.+++|+
T Consensus 13 ~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWr 92 (156)
T PF08372_consen 13 LWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWR 92 (156)
T ss_pred HhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 455566677777788899999999999999998763 33445555 899999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHccchhHHHHHHH
Q 004127 595 NPLTTILIHILFIILVLYPELILPTVFLY 623 (772)
Q Consensus 595 ~p~~t~~~~~~~~~~~~~~~l~~p~~~l~ 623 (772)
+|.+|.++.++.++++ ...+++|+=.++
T Consensus 93 dP~aT~lf~~~clv~a-vvly~vP~r~l~ 120 (156)
T PF08372_consen 93 DPRATALFVVFCLVAA-VVLYFVPFRVLV 120 (156)
T ss_pred CccHHHHHHHHHHHHH-HHHHHhhHHHHH
Confidence 9999999855554444 334556665443
No 233
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.71 E-value=2.5e-08 Score=105.35 Aligned_cols=124 Identities=28% Similarity=0.478 Sum_probs=101.9
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCeeeeeeeecCCCCCeec-cEEEEEec--cCCCceEEEEEEecCCC-C
Q 004127 40 QYLYVRVVKAKDLPGKDV-TGSCDPYVEVKLGNYKGTTKHFEKKSNPEWN-QCFAFSKD--RIQASVLEVLVKDKDVV-L 114 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wn-e~f~f~v~--~~~~~~L~i~V~d~~~~-~ 114 (772)
|.|.|.|..||+|+.+|. +...|.||.+++++..+||.+..+++||.|| +.|.|.+. +++++.|.|.+.|+|.. .
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 678999999999999986 3468999999999999999999999999999 56889884 56789999999999998 9
Q ss_pred CceeEEEEEEccccCCCCCC-----CCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 115 DDLIGRVMFDLNEVPKRIPP-----DSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~-----~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
++-||.+.|++..|...... .......|+++.+.- ..++ |+|++-+.+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hgir-geinvivkvd 136 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HGIR-GEINVIVKVD 136 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-cccc-ceeEEEEEEe
Confidence 99999999999988643211 235677899998753 2244 8888877553
No 234
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.67 E-value=9.4e-09 Score=111.43 Aligned_cols=105 Identities=29% Similarity=0.417 Sum_probs=89.9
Q ss_pred ccCCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------eeeeeeecCCCCCeeccEEEEEec
Q 004127 24 ITGDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY-------KGTTKHFEKKSNPEWNQCFAFSKD 96 (772)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-------~~kT~~~~~t~nP~Wne~f~f~v~ 96 (772)
+|..-+.+.|+...+ .|.|.|+.|+++.+-|.+|.+||||++.+++. ..+|+++++|+||+|+|+|+|.|.
T Consensus 933 fg~lsvr~~y~~n~q--~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp 1010 (1103)
T KOG1328|consen 933 FGVLSVRAYYNGNAQ--TLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVP 1010 (1103)
T ss_pred CCceEEEEEeecccc--chhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecC
Confidence 344445566666665 89999999999999999999999999999972 469999999999999999999985
Q ss_pred cC----CCceEEEEEEecCCC-CCceeEEEEEEccccCC
Q 004127 97 RI----QASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPK 130 (772)
Q Consensus 97 ~~----~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~ 130 (772)
.. ....|.|+|.|+|.. .+||-|++.+.|+++..
T Consensus 1011 ~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1011 PEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred ccccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 32 246799999999999 99999999999998853
No 235
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.67 E-value=1.5e-07 Score=104.69 Aligned_cols=118 Identities=22% Similarity=0.363 Sum_probs=89.8
Q ss_pred EEEEEEEEecCCCCCccCC-CCCCcCcEEEEEECC-----EEEEeeccc-CCCCCeecceEEEEeeCCC-cEEEEEEEeC
Q 004127 364 ILELGVLSAHGLTPMKTKD-GRGTTDAYCVAKYGQ-----KWVRTRTIV-DSFGPRWNEQYTWEVFDPC-TVITVGVFDN 435 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~-~~g~~dpyv~v~~~~-----~~~~T~~~~-~t~~P~Wne~~~~~v~~~~-~~l~i~v~D~ 435 (772)
.|.|.|+.+++++...... .+..+||||.|+..| ...+|+++. ++-||.|+|+|+|++..|. .-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999876642222 235589999999854 348999555 6889999999999999875 6799999999
Q ss_pred CcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcc-cccEEEEEEEE
Q 004127 436 GHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVR-KMGEVQLAVRF 492 (772)
Q Consensus 436 ~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f 492 (772)
|..+ +|+|+|+..||+..|..|- +-.||.+.. |.. ..-++-+.+.+
T Consensus 697 d~~~------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~--G~~~~~asLfv~i~~ 743 (746)
T KOG0169|consen 697 DYIG------KDDFIGQTTLPVSELRQGY---RHVPLLSRE--GEALSSASLFVRIAI 743 (746)
T ss_pred CCCC------cccccceeeccHHHhhCce---eeeeecCCC--CccccceeEEEEEEE
Confidence 9865 8999999999999998873 557776642 322 23445555554
No 236
>PLN02352 phospholipase D epsilon
Probab=98.64 E-value=1.8e-07 Score=106.16 Aligned_cols=120 Identities=21% Similarity=0.290 Sum_probs=92.8
Q ss_pred cEEEEEEEEecCCCCCccC-CC-CCCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCC-cEEEEEEEeCCcC
Q 004127 363 GILELGVLSAHGLTPMKTK-DG-RGTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPC-TVITVGVFDNGHI 438 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~-~~-~g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~-~~l~i~v~D~~~~ 438 (772)
|.|.++|++|+-+...-.. +. ....||||.|.+++.+ .|| .+..||+|||.|.+++..+. ..+.|.|.|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 7888999998733211000 00 1123999999998876 599 66679999999999999987 789999999
Q ss_pred CCCCCCCCCcccEEEEEecCccccCce-EeeeEeeeecCCCCcccccEEEEEEEEeecch
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLETDRV-YTHSYPLLVLHPSGVRKMGEVQLAVRFTCSSL 497 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~ 497 (772)
+..+||.+.|++.+|..|.. ++.|+++.+...+.. +..+|+++++|.+...
T Consensus 83 -------~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 -------KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN-PELKLRFMLWFRPAEL 134 (758)
T ss_pred -------CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC-CCCEEEEEEEEEEhhh
Confidence 35799999999999998865 899999988654433 2258999999998754
No 237
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.64 E-value=3.4e-08 Score=112.45 Aligned_cols=119 Identities=29% Similarity=0.360 Sum_probs=99.3
Q ss_pred CCCccc-CCcceeeecCcCceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEE
Q 004127 20 GAGSIT-GDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAF 93 (772)
Q Consensus 20 ~~~~~~-~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f 93 (772)
++|.+| .++++++|. .|.|.|-|.-|++|+--..+..+||||+.++.. .++||+++.+|.||.|||.+.+
T Consensus 1507 ~p~~iggqV~LsIsY~----~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY 1582 (1639)
T KOG0905|consen 1507 NPGEIGGQVKLSISYN----NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVY 1582 (1639)
T ss_pred CccccCceEEEEEEEc----CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheee
Confidence 567766 568888887 579999999999996555567899999999976 3689999999999999999988
Q ss_pred E---eccCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeec
Q 004127 94 S---KDRIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLED 147 (772)
Q Consensus 94 ~---v~~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 147 (772)
. ...+....|++.||..+.. .+.++|.+.++|.++...++ ...||+|..
T Consensus 1583 ~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE-----~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1583 DGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKE-----SVGWYNLGA 1635 (1639)
T ss_pred cCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhh-----hcceeeccc
Confidence 7 2444568899999999988 99999999999999977642 358999964
No 238
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.62 E-value=1.4e-07 Score=103.75 Aligned_cols=100 Identities=19% Similarity=0.321 Sum_probs=82.6
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEEC-----CEEE-EeecccCCCCCeec-ceEEEEeeCCC-cEEEEEEEe
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYG-----QKWV-RTRTIVDSFGPRWN-EQYTWEVFDPC-TVITVGVFD 434 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~-----~~~~-~T~~~~~t~~P~Wn-e~~~~~v~~~~-~~l~i~v~D 434 (772)
-.|.|.|+.|+.|+. .++|...|||.|++- ..++ +|.++.+.+||+|| |.|+|.|.+|. .-|+|.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 578999999999984 566778899999873 2344 45556689999999 99999999984 789999999
Q ss_pred CCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeec
Q 004127 435 NGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVL 475 (772)
Q Consensus 435 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 475 (772)
.|.++ ...|||++..|+..|..| -+..||++.
T Consensus 1141 eDmfs------~~~FiaqA~yPv~~ik~G---fRsVpLkN~ 1172 (1267)
T KOG1264|consen 1141 EDMFS------DPNFLAQATYPVKAIKSG---FRSVPLKNG 1172 (1267)
T ss_pred ccccC------Ccceeeeeecchhhhhcc---ceeeecccC
Confidence 99987 556999999999999887 356777653
No 239
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.61 E-value=1.6e-07 Score=103.31 Aligned_cols=117 Identities=21% Similarity=0.350 Sum_probs=93.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----ee-eeeeeecCCCCCeec-cEEEEEeccCCCceEEEEEEecCCC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YK-GTTKHFEKKSNPEWN-QCFAFSKDRIQASVLEVLVKDKDVV 113 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~-~kT~~~~~t~nP~Wn-e~f~f~v~~~~~~~L~i~V~d~~~~ 113 (772)
.|.|.|+.||.|+... .|.+.|||.|.+-| .+ ++|.++.+++||+|| |.|.|.+..+.-..|+|.|||.|.+
T Consensus 1066 ~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred EEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 6889999999999554 45677999999976 23 455666899999999 9999999998889999999999999
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 114 -LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
...|||++++++..+..+- +-.+|.+.-.+...+..|.+.+.+.+
T Consensus 1145 s~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~~ 1190 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMRP 1190 (1267)
T ss_pred CCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEecc
Confidence 5669999999999997652 34477665444444577777776654
No 240
>PLN02352 phospholipase D epsilon
Probab=98.41 E-value=2.1e-06 Score=97.67 Aligned_cols=118 Identities=17% Similarity=0.279 Sum_probs=91.7
Q ss_pred eEEEEEEEEeecCCCC----C-CCCCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC
Q 004127 40 QYLYVRVVKAKDLPGK----D-VTGSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV 113 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~----~-~~~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~ 113 (772)
|.|.++|.+|+-+... + .+...+|||.|.+++ ...|| .+..||.|+|.|.+.+....+..+.|.|+|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT---- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec----
Confidence 6899999999843221 1 112239999999998 46788 556699999999999987655689999999
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeecC
Q 004127 114 LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQA 168 (772)
Q Consensus 114 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 168 (772)
+..+||.+.+++.++..+. .....|+++.+..|+......|.+++.|.+..
T Consensus 83 ~~~~ig~~~~p~~~~~~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 KCSILGRFHIQAHQIVTEA----SFINGFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred CCeEEEEEEEEHHHhhCCC----cccceEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 4679999999999998763 22689999999887755413888888887644
No 241
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.36 E-value=0.00024 Score=74.63 Aligned_cols=243 Identities=19% Similarity=0.222 Sum_probs=157.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEec-------cCCCceEEEEEEecCCC-
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKD-------RIQASVLEVLVKDKDVV- 113 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~-------~~~~~~L~i~V~d~~~~- 113 (772)
+.|+|++|+|.+... ...-.+..+++++...|..+..+..|.||..+.|.++ ......|++++|..+..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998763 3467889999999999999999999999999999874 23467899999999843
Q ss_pred -CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC--CCceeeeEEEEEEEeeecCCCcCCCc----CC--CCCccCC
Q 004127 114 -LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK--GDKVKTGELMLAVWMGTQADEAFPDA----WH--SDAATVS 184 (772)
Q Consensus 114 -~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~~G~l~l~~~~~~~~d~~~~~~----~~--~~~~~~~ 184 (772)
+.+.+|.+.++|.........+......||+|..-+ -++.+ -+|.+.+.+.........+. +. +......
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~K-PEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~ 157 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHK-PELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHV 157 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCC-ccEEEEEEEeccccccCCccccccccCCCcccCCC
Confidence 889999999999998222222234678999998873 23345 78888888876543211100 00 0000000
Q ss_pred CCC---ccc--cc-----cc----e---eecCceEEEEEEEEEeecCCCCCC----C--CCCccEEEEEECCeeeeeccc
Q 004127 185 GEG---VAN--IR-----SK----V---YLSPKLWYVRVNIIEAQDLLPSDK----S--RFPEVFVKAILGNQASRTRIS 241 (772)
Q Consensus 185 ~~~---~~~--~~-----~~----~---~~~~~~~~L~V~v~~a~~L~~~~~----~--~~~dpyv~v~l~~~~~kT~~~ 241 (772)
... ... .. .. . ........|.|++..|.+|...-. . +....|....+-+....|..-
T Consensus 158 ~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F 237 (340)
T PF12416_consen 158 PPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF 237 (340)
T ss_pred cccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec
Confidence 000 000 00 00 0 012346689999999999875521 1 224556666666666666655
Q ss_pred cCCCCCCcee--ceeEEEeeCC---------CCCcEEEEEEEccCCCCCceeEEEEEecccccc
Q 004127 242 PSKTINPMWN--EDLMFVAAEP---------FEEPLILTVEDRVAPNKDEVLGKCLIPLQAVQR 294 (772)
Q Consensus 242 ~~~t~nP~wn--e~f~f~~~~~---------~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 294 (772)
.. ..+|.|. +.-.+.+... ....|.|.++.. +..||.+.+++..+..
T Consensus 238 ~~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 238 KS-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----NQSLGSTSVPLQPLLP 295 (340)
T ss_pred cc-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----CcEEEEEEEEhhhccC
Confidence 54 6677553 3332444321 234677777663 6689999999999864
No 242
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.28 E-value=9.4e-07 Score=76.66 Aligned_cols=108 Identities=23% Similarity=0.340 Sum_probs=80.0
Q ss_pred EEEEEEEecCCCCCccC------C----CCCCcCcEEEEEE----CCEEEEeecccCCCCCeecceEEEEee--------
Q 004127 365 LELGVLSAHGLTPMKTK------D----GRGTTDAYCVAKY----GQKWVRTRTIVDSFGPRWNEQYTWEVF-------- 422 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~------~----~~g~~dpyv~v~~----~~~~~~T~~~~~t~~P~Wne~~~~~v~-------- 422 (772)
+.|.|++|.||+.+... + ..-..++||++.+ +++..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 35788899999764221 1 1223789999985 567799999999999999999999876
Q ss_pred C--------CCcEEEEEEEeCCcCCCCC----CCCCCcccEEEEEecCcccc-CceEeeeEee
Q 004127 423 D--------PCTVITVGVFDNGHIHGQG----GGGKDSRIGKVRIRLSTLET-DRVYTHSYPL 472 (772)
Q Consensus 423 ~--------~~~~l~i~v~D~~~~~~~~----~~~~~~~lG~~~i~l~~l~~-~~~~~~~~~L 472 (772)
+ ....+.++||....-+.++ ...+|-.||.+.||+.+|.. ...++.|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 1367999999987643221 13467789999999999854 3467889975
No 243
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.20 E-value=1.8e-06 Score=98.99 Aligned_cols=104 Identities=22% Similarity=0.290 Sum_probs=84.6
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECC-----EEEEeecccCCCCCeecceEEEEee---CC-CcEEEEEE
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQ-----KWVRTRTIVDSFGPRWNEQYTWEVF---DP-CTVITVGV 432 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~~P~Wne~~~~~v~---~~-~~~l~i~v 432 (772)
.|.|.|.|..|+||+-. -.+..+||||+.++-+ .+.||+++++|.||.|||.+.+.-. .. ..+|.+.|
T Consensus 1523 ~~~LtImV~H~K~L~~L---qdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sV 1599 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALL---QDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSV 1599 (1639)
T ss_pred CceEEEEhhhhcccccc---cCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeee
Confidence 38999999999999765 3345699999999933 3489999999999999998776522 22 47899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeee
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLV 474 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 474 (772)
|..+.+. .+.++|.+.|+|.++.-.+...+||+|-+
T Consensus 1600 ls~~~~~------en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1600 LSNGGLL------ENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred eccccee------eeeeeeeeecchhhcchhhhhcceeeccc
Confidence 9998765 88999999999999876665579999843
No 244
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.94 E-value=0.0052 Score=64.68 Aligned_cols=236 Identities=15% Similarity=0.222 Sum_probs=156.0
Q ss_pred EEEEEEEeecCCCCCCCCCCccEEEEEECCeeeeeccccCCCCCCceeceeEEEeeC-------CCCCcEEEEEEEcc-C
Q 004127 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAE-------PFEEPLILTVEDRV-A 275 (772)
Q Consensus 204 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~-------~~~~~l~i~V~d~d-~ 275 (772)
+.|.|++|++.+... ...-.+..++++....|..+.. +..|.||....|.+.. .....|++++|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 578999999998762 3467888999999999999887 9999999999998742 23568999999888 5
Q ss_pred CCCCceeEEEEEecccc---ccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCccccCC---------C
Q 004127 276 PNKDEVLGKCLIPLQAV---QRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDE---------S 343 (772)
Q Consensus 276 ~~~d~~iG~~~i~l~~l---~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~---------~ 343 (772)
.+..+.+|.+.++|... .. .......+||+|.... .+-.+..-++.+.+.+......... .
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~--~~~~~~~~W~~LL~~~-----~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~ 150 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQE--KNQKQKPKWYKLLSSS-----SKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPA 150 (340)
T ss_pred CCcceeccEEEEEccccccccc--cccccCCCeeEccccc-----cccccCCccEEEEEEEeccccccCCccccccccCC
Confidence 66788999999999988 32 2234678999998751 0112234567777777554321000 0
Q ss_pred cccCC-------CCCccc--cc-------cc------cCCccEEEEEEEEecCCCCCccC---CCCCCcCcEEEEEECCE
Q 004127 344 THYSS-------DLRPTA--KQ-------LW------KPSIGILELGVLSAHGLTPMKTK---DGRGTTDAYCVAKYGQK 398 (772)
Q Consensus 344 ~~~~~-------~~~p~~--~~-------~~------~~~~g~l~v~v~~a~~L~~~~~~---~~~g~~dpyv~v~~~~~ 398 (772)
+.... ...+.. .+ +. ....=.|.|++-.|++|..+-.. +..+....|....+-|.
T Consensus 151 p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn 230 (340)
T PF12416_consen 151 PPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGN 230 (340)
T ss_pred CcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCc
Confidence 11111 001100 00 00 11234678888889998665111 11133566677777666
Q ss_pred EEEeecccCCCCCeec-ceEE-EEeeC----------CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccc
Q 004127 399 WVRTRTIVDSFGPRWN-EQYT-WEVFD----------PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLE 461 (772)
Q Consensus 399 ~~~T~~~~~t~~P~Wn-e~~~-~~v~~----------~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~ 461 (772)
...|..-+...+|.+- |... +.+.. ....|.|.++- .+..||.+.|++..+.
T Consensus 231 ~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----------g~~~Lg~~~v~l~~Ll 294 (340)
T PF12416_consen 231 DVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----------GNQSLGSTSVPLQPLL 294 (340)
T ss_pred EeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----------CCcEEEEEEEEhhhcc
Confidence 7788888888888774 3333 66652 13467777776 4568999999999984
No 245
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.88 E-value=1.3e-05 Score=69.74 Aligned_cols=100 Identities=21% Similarity=0.352 Sum_probs=77.5
Q ss_pred EEEEEEEeecCCCCCC-------------CCCCCcEEEEEEC----CeeeeeeeecCCCCCeeccEEEEEec--------
Q 004127 42 LYVRVVKAKDLPGKDV-------------TGSCDPYVEVKLG----NYKGTTKHFEKKSNPEWNQCFAFSKD-------- 96 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~-------------~~~~dpyv~v~~~----~~~~kT~~~~~t~nP~Wne~f~f~v~-------- 96 (772)
|.|.|++|.+|++... .-.-|+||++.+. ++..+|+++.++--|.|+-.++|+..
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4577888888875311 1235899999954 36789999999999999999999863
Q ss_pred c-------CCCceEEEEEEecCCC-----------CCceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 97 R-------IQASVLEVLVKDKDVV-----------LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 97 ~-------~~~~~L~i~V~d~~~~-----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
+ ++...+.++||+...- +|-+||.+.|++.+|... ++....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~----rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK----RSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc----ccCccccccC
Confidence 1 2356899999998641 677999999999999876 4567889975
No 246
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.74 E-value=2.9e-05 Score=62.47 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=66.9
Q ss_pred EEEEEEeecCCCC-CCCCCCCcEEEEEE--CC-eeeeeeeecCCCCCeeccEEEEEec--cCCCceEEEEEEecCCCCCc
Q 004127 43 YVRVVKAKDLPGK-DVTGSCDPYVEVKL--GN-YKGTTKHFEKKSNPEWNQCFAFSKD--RIQASVLEVLVKDKDVVLDD 116 (772)
Q Consensus 43 ~V~v~~a~~L~~~-~~~~~~dpyv~v~~--~~-~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~L~i~V~d~~~~~d~ 116 (772)
-|+++.|+||.-. ..+.++.-|++-.+ .. ...||.+..+..||+|+|+|.|.+. .+..-.|.|.|+..-+ +.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~-RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP-RKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCC-ccc
Confidence 4789999999643 33445556776333 33 5689999999999999999999974 4556788899988222 888
Q ss_pred eeEEEEEEccccCCC
Q 004127 117 LIGRVMFDLNEVPKR 131 (772)
Q Consensus 117 ~lG~~~i~l~~l~~~ 131 (772)
.||.+.+++.++-.+
T Consensus 81 ~iG~~sL~l~s~gee 95 (103)
T cd08684 81 TIGECSLSLRTLSTQ 95 (103)
T ss_pred eeeEEEeecccCCHH
Confidence 999999999988543
No 247
>PLN02964 phosphatidylserine decarboxylase
Probab=97.66 E-value=6.3e-05 Score=85.33 Aligned_cols=88 Identities=22% Similarity=0.343 Sum_probs=72.9
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEE-EEECCEEEEeecccCCCCCeecceEEEEeeC-CCcEEEEEEEeCCcC
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCV-AKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD-PCTVITVGVFDNGHI 438 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~-v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~-~~~~l~i~v~D~~~~ 438 (772)
-.|.+.+++++|+ | + ..|||+. +.+|.+.+||.+.++|+||+||+...|.|.. .....+|.|||++.+
T Consensus 52 ~~~~~~~~~~~~~----~---~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 52 FSGIALLTLVGAE----M---K---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred ccCeEEEEeehhh----h---c---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 3488999999887 3 2 2588865 5779999999999999999999999998885 233469999999998
Q ss_pred CCCCCCCCCcccEEEEEecCccccCc
Q 004127 439 HGQGGGGKDSRIGKVRIRLSTLETDR 464 (772)
Q Consensus 439 ~~~~~~~~~~~lG~~~i~l~~l~~~~ 464 (772)
+ +++.+|.++++|.++...+
T Consensus 122 s------~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 122 S------KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred C------HHHhhhheeecHhhccHHH
Confidence 6 9999999999998886543
No 248
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.47 E-value=0.00016 Score=58.36 Aligned_cols=95 Identities=14% Similarity=0.375 Sum_probs=68.1
Q ss_pred EEEEEEeecCCCCCC-CCCCccEEEEEEC--C-eeeeeccccCCCCCCceeceeEEEeeCC--CCCcEEEEEEEccCCCC
Q 004127 205 RVNIIEAQDLLPSDK-SRFPEVFVKAILG--N-QASRTRISPSKTINPMWNEDLMFVAAEP--FEEPLILTVEDRVAPNK 278 (772)
Q Consensus 205 ~V~v~~a~~L~~~~~-~~~~dpyv~v~l~--~-~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~d~~~~ 278 (772)
-|+++.|+||.-... ...+.-|++-.+. + -..||++... ..||.|+|+|.|.+... ..-.|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrg-s~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEG-SNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcC-CCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 478899999864332 3345567765553 2 4567777665 99999999999987543 34478888887 5678
Q ss_pred CceeEEEEEeccccccccCCCCCCceeEE
Q 004127 279 DEVLGKCLIPLQAVQRRLDHKPVNTRWFN 307 (772)
Q Consensus 279 d~~iG~~~i~l~~l~~~~~~~~~~~~w~~ 307 (772)
...||.|.+.+.++..++ ..+|.+
T Consensus 79 Ke~iG~~sL~l~s~geeE-----~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQE-----TDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHHH-----hhhhhc
Confidence 899999999999886432 556654
No 249
>PLN02964 phosphatidylserine decarboxylase
Probab=97.44 E-value=0.00017 Score=81.90 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=76.1
Q ss_pred cCcCceeEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCC
Q 004127 34 DLVEQMQYLYVRVVKAKDLPGKDVTGSCDPY-VEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDV 112 (772)
Q Consensus 34 ~~~~~~~~L~V~v~~a~~L~~~~~~~~~dpy-v~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~ 112 (772)
..+.-.|+..+++++|+ ++ -.||| +.+.+|.+.+||.+.++|.||+||+...|.+.........|.|||.+.
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred ecccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 34445689999999997 33 24785 556777799999999999999999999999977666778999999999
Q ss_pred C-CCceeEEEEEEccccCCC
Q 004127 113 V-LDDLIGRVMFDLNEVPKR 131 (772)
Q Consensus 113 ~-~d~~lG~~~i~l~~l~~~ 131 (772)
+ +++++|.++++|.++..+
T Consensus 121 ~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 121 LSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CCHHHhhhheeecHhhccHH
Confidence 9 999999999999888755
No 250
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.00067 Score=69.80 Aligned_cols=107 Identities=20% Similarity=0.284 Sum_probs=85.5
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE-CCE----EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeC
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY-GQK----WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDN 435 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~-~~~----~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~ 435 (772)
..|.+.|.|++|++|.... ..+..++|||+|++ ++. +.+|+...+|++|.+.+...|.-.-+...|.+.||-.
T Consensus 267 ~~g~l~vEii~ar~l~~k~--~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKP--GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccC--CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecc
Confidence 4589999999999998752 23446999999988 332 3689999999999998888887777788899999853
Q ss_pred -CcCCCCCCCCCCcccEEEEEecCccccCc-eEeeeEeeeec
Q 004127 436 -GHIHGQGGGGKDSRIGKVRIRLSTLETDR-VYTHSYPLLVL 475 (772)
Q Consensus 436 -~~~~~~~~~~~~~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 475 (772)
.. -+.+.|+|.++|-+.+|.-.. ....||+|.+.
T Consensus 345 ygR------md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGR------MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccc------cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 22 237889999999999997554 77899999765
No 251
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.00023 Score=73.11 Aligned_cols=111 Identities=23% Similarity=0.291 Sum_probs=89.1
Q ss_pred cCcCceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEE
Q 004127 34 DLVEQMQYLYVRVVKAKDLPGKDVT-GSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLV 107 (772)
Q Consensus 34 ~~~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V 107 (772)
.+....|.|.|.|++|++|..+... ..++|||+|++.+ .+.+|+...+|..|-+-+...|.-.. ....|.++|
T Consensus 263 ~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-~~k~Lq~tv 341 (405)
T KOG2060|consen 263 ALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-PGKYLQGTV 341 (405)
T ss_pred hhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-CccEEEEEE
Confidence 4567788999999999999866432 3699999999975 36789999999999888888887654 578999999
Q ss_pred Ee-cCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 108 KD-KDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 108 ~d-~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
|- +.+. .+.|+|.+.+-+.+|.... ...-.||+|-...
T Consensus 342 ~gdygRmd~k~fmg~aqi~l~eL~ls~----~~~igwyKlfgss 381 (405)
T KOG2060|consen 342 WGDYGRMDHKSFMGVAQIMLDELNLSS----SPVIGWYKLFGSS 381 (405)
T ss_pred eccccccchHHHhhHHHHHhhhhcccc----ccceeeeeccCCc
Confidence 96 4555 8889999999999997652 3466899997653
No 252
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.20 E-value=0.00025 Score=73.31 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=89.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeeecCCCCCeeccEEEEEecc---C--------CCceEE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLG-----NYKGTTKHFEKKSNPEWNQCFAFSKDR---I--------QASVLE 104 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~kT~~~~~t~nP~Wne~f~f~v~~---~--------~~~~L~ 104 (772)
.|.+.|+++.+++........|-|+++.+. .++.+|.++++|.+|.|+|.|.+.+.. . ....+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 577888888888765433346778888874 267899999999999999999999854 1 124689
Q ss_pred EEEEecCCC--CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEee
Q 004127 105 VLVKDKDVV--LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMG 165 (772)
Q Consensus 105 i~V~d~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 165 (772)
|++|++..+ +|.++|.+.+.|.-|... ......++|.+.. +.+. |.|.+.+.+.
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~-----cei~e~~~l~DGR-K~vG-GkLevKvRiR 503 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENM-----CEICEYLPLKDGR-KAVG-GKLEVKVRIR 503 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcc-----cchhhceeccccc-cccC-CeeEEEEEEe
Confidence 999999988 999999999999988654 2245566776532 2244 8888888764
No 253
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.96 E-value=0.00059 Score=70.71 Aligned_cols=119 Identities=20% Similarity=0.290 Sum_probs=93.0
Q ss_pred ccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE---C--CEEEEeecccCCCCCeecceEEEEeeC-C-----------
Q 004127 362 IGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY---G--QKWVRTRTIVDSFGPRWNEQYTWEVFD-P----------- 424 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~---~--~~~~~T~~~~~t~~P~Wne~~~~~v~~-~----------- 424 (772)
...|++.|+++++++.. .+....|-|+++++ . ....+|.++++|.+|.|+|.|.+.+.. +
T Consensus 366 d~elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk 442 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK 442 (523)
T ss_pred hhHhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence 35678888899988764 33345788999877 2 245789999999999999999999875 1
Q ss_pred CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcc-cccEEEEEEEE
Q 004127 425 CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVR-KMGEVQLAVRF 492 (772)
Q Consensus 425 ~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f 492 (772)
...+.|++|....+ ..+|.++|.+.+.|..|++.-.+...++|.+ |.| ..|.+.+.+++
T Consensus 443 r~g~kfeifhkggf-----~rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRi 502 (523)
T KOG3837|consen 443 RLGKKFEIFHKGGF-----NRSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRI 502 (523)
T ss_pred hcCeeEEEeecccc-----ccccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEE
Confidence 23589999997655 4589999999999999988777778888875 343 35788888876
No 254
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.85 E-value=0.11 Score=48.00 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=85.0
Q ss_pred cEEEEEEEEecCCCCC-ccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCC--------------CcE
Q 004127 363 GILELGVLSAHGLTPM-KTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDP--------------CTV 427 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~-~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~--------------~~~ 427 (772)
..|++.|+.++....- +..++...+--.+-+.+++++++|+.+.-+.+|.++|.|-|++... ++.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 5677888887764321 0001122233334556699999999999999999999999988632 467
Q ss_pred EEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccCceE--eeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 428 ITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETDRVY--THSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 428 l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
|++-|.-.|..+ ...++|.-.++...+...... .....|.+......-..|.+++++...|
T Consensus 89 ihivli~~d~~~------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 89 IHIVLIRTDPSG------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred eEEEEEEecCCC------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeec
Confidence 899998877643 558999999999987543322 3444555543322224699999988755
No 255
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.64 E-value=0.055 Score=61.75 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=80.6
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeee-cCCCCCeeccE-EEEEe-ccCCCceEEEEEEe
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-------YKGTTKHF-EKKSNPEWNQC-FAFSK-DRIQASVLEVLVKD 109 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------~~~kT~~~-~~t~nP~Wne~-f~f~v-~~~~~~~L~i~V~d 109 (772)
+.+.|+|++|.=|..++. ..||.|.+=| ..+||+++ .++.||+|+|. |.|.- --+.-..|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 478999999998886653 4899999865 25688888 55669999975 77763 33334789999999
Q ss_pred cCCCCCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 110 KDVVLDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 110 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
.+ ..+||.-.+++..+..+ -+.+.|....+....+..|.+.+.+
T Consensus 779 Eg---gK~ig~RIlpvd~l~~G--------Yrhv~LRse~Nqpl~lp~Lfv~i~~ 822 (1189)
T KOG1265|consen 779 EG---GKFIGQRILPVDGLNAG--------YRHVCLRSESNQPLTLPALFVYIVL 822 (1189)
T ss_pred cC---CceeeeeccchhcccCc--------ceeEEecCCCCCccccceeEEEEEe
Confidence 85 57999999999988755 2455777666554434566666644
No 256
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.55 E-value=0.084 Score=49.51 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=60.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCee----eeeeeecCCCCCeeccEEEEEec--c-CCCceEEEEEEecC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKL--GNYK----GTTKHFEKKSNPEWNQCFAFSKD--R-IQASVLEVLVKDKD 111 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~----~kT~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~i~V~d~~ 111 (772)
.++|+|+.+.++...+ .++-||++.+ |++. ..|+.+.. .++.|||.+.|++. + +.+..|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 5889999999988643 4678888744 5532 35555543 68999999999873 3 34688999999976
Q ss_pred CC-----CCceeEEEEEEcccc
Q 004127 112 VV-----LDDLIGRVMFDLNEV 128 (772)
Q Consensus 112 ~~-----~d~~lG~~~i~l~~l 128 (772)
.. ....+|.+.++|-+-
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 42 124688888887763
No 257
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.54 E-value=0.14 Score=47.94 Aligned_cols=89 Identities=18% Similarity=0.304 Sum_probs=61.8
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCEEE----EeecccCCCCCeecceEEEEee--C-C-CcEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQKWV----RTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGV 432 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~~~----~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v 432 (772)
..++|+|+++.++... ..+|-||.+.+ |++.. .|+.+.- .++.|||-++|++. + | ...|.|.|
T Consensus 8 ~~~~v~i~~~~~~~~~------~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti 80 (158)
T cd08398 8 SNLRIKILCATYVNVN------DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSI 80 (158)
T ss_pred CCeEEEEEeeccCCCC------CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEE
Confidence 4688999999998642 24688887754 66543 4544443 68999999888776 3 3 67899999
Q ss_pred EeCCcCCCCCCCCCCcccEEEEEecCcc
Q 004127 433 FDNGHIHGQGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 433 ~D~~~~~~~~~~~~~~~lG~~~i~l~~l 460 (772)
|+...-. .+.+....||.+.++|-+-
T Consensus 81 ~~~~~~~--~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 81 CSVKGRK--GAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EEEeccc--CCCCceEEEEEEEEEEECC
Confidence 9975311 0011345699999999773
No 258
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.53 E-value=0.18 Score=46.72 Aligned_cols=95 Identities=14% Similarity=0.260 Sum_probs=69.6
Q ss_pred CceEEEEEEEEEeecCCCCCCC--CCCccEE--EEEECCeeeeeccccCCCCCCceeceeEEEeeCCC------------
Q 004127 199 PKLWYVRVNIIEAQDLLPSDKS--RFPEVFV--KAILGNQASRTRISPSKTINPMWNEDLMFVAAEPF------------ 262 (772)
Q Consensus 199 ~~~~~L~V~v~~a~~L~~~~~~--~~~dpyv--~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~------------ 262 (772)
+...+|++.|..++-....-.. +..+.-. -+.+++|.++|+.+.. +.+|.|+|.|-|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhc
Confidence 4455799999999876533221 3334444 4455799999999987 999999999999986442
Q ss_pred -CCcEEEEEEEccCCCCCceeEEEEEecccccc
Q 004127 263 -EEPLILTVEDRVAPNKDEVLGKCLIPLQAVQR 294 (772)
Q Consensus 263 -~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 294 (772)
.+.+.+.|...|..+...++|+..++...+..
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~ 117 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLC 117 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhc
Confidence 33677777777766666899999998887764
No 259
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.43 E-value=0.16 Score=48.61 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=63.6
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCEE----EEeecccCCCCCeecceEEEEee--C-C-CcEEEEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGV 432 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~~----~~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v 432 (772)
..++|+|+.+.+|... ....+-||.+.+ |++. ..|+.+.-+.++.|||.+.|++. + | ...|.|.|
T Consensus 8 ~~f~i~i~~~~~~~~~-----~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti 82 (173)
T cd08693 8 EKFSITLHKISNLNAA-----ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAI 82 (173)
T ss_pred CCEEEEEEEeccCccC-----CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEE
Confidence 3688999999999752 123667777644 7765 35655555678999999888776 3 3 67899999
Q ss_pred EeCCcCCCCC----------CCCCCcccEEEEEecCcc
Q 004127 433 FDNGHIHGQG----------GGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 433 ~D~~~~~~~~----------~~~~~~~lG~~~i~l~~l 460 (772)
|+......+. ..+++..||.+.++|-+-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred EEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 9975422110 012357899998888763
No 260
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.35 E-value=0.097 Score=50.08 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=51.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEE--EECCe----eeeeeeecCCCCCeeccEEEEEe--cc-CCCceEEEEEEecC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEV--KLGNY----KGTTKHFEKKSNPEWNQCFAFSK--DR-IQASVLEVLVKDKD 111 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v--~~~~~----~~kT~~~~~t~nP~Wne~f~f~v--~~-~~~~~L~i~V~d~~ 111 (772)
.++|+|+.+.++... ....+-||++ +.|++ ...|+.+..+.++.|||.+.|++ .+ +.+..|.|.||+..
T Consensus 9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 689999999999862 2346677775 44554 34676666567899999999986 23 34688999999975
Q ss_pred C
Q 004127 112 V 112 (772)
Q Consensus 112 ~ 112 (772)
.
T Consensus 87 ~ 87 (173)
T cd08693 87 K 87 (173)
T ss_pred c
Confidence 4
No 261
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=95.09 E-value=0.0032 Score=60.43 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHhccccCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhcCCccCCCCCCch
Q 004127 691 IGDLATQGERFQSLISWRDPRATTLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHKLPSVP 757 (772)
Q Consensus 691 l~~~a~~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~iP~r~i~~~~g~~~~~~P~~r~~~p~~~ 757 (772)
...++..+..++.++.|++|..|..++.+|.+.+.+..+++...++.+..+..+.=|.+-+.+...+
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~I 156 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEI 156 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455566888899999999999999999999999999989988777776666566666655543333
No 262
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.94 E-value=0.79 Score=42.34 Aligned_cols=119 Identities=21% Similarity=0.298 Sum_probs=79.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeee-cCCCCCeeccEEEEEec--------cCCCceEEEEE
Q 004127 40 QYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNY---KGTTKHF-EKKSNPEWNQCFAFSKD--------RIQASVLEVLV 107 (772)
Q Consensus 40 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~---~~kT~~~-~~t~nP~Wne~f~f~v~--------~~~~~~L~i~V 107 (772)
..+.|+|.+..+++. ....-+|+..-++. ..+|... ..+..-.|||.|.+.+. ......+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 467899999999886 33456777766664 3555555 33446789999999862 12346789999
Q ss_pred EecCCC-CCceeEEEEEEccccCCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeecC
Q 004127 108 KDKDVV-LDDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQA 168 (772)
Q Consensus 108 ~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 168 (772)
+..... +...+|.+.++|+++..... .....-++|.... ... ..|.+++.+....
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~---~~~~~~~~l~~~~--~~~-a~L~isi~~~~~~ 138 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDE---EPITVRLLLKKCK--KSN-ATLSISISLSELR 138 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCC---CcEEEEEeCccCC--CCC-cEEEEEEEEEECc
Confidence 988543 33699999999999986521 1234455666542 222 7788888776443
No 263
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=94.59 E-value=0.11 Score=59.45 Aligned_cols=95 Identities=20% Similarity=0.326 Sum_probs=73.4
Q ss_pred EEEEEEEEEeecCCCCCCCCCCccEEEEEECC-------eeeeeccccCCCCCCceece-eEEE-eeCCCCCcEEEEEEE
Q 004127 202 WYVRVNIIEAQDLLPSDKSRFPEVFVKAILGN-------QASRTRISPSKTINPMWNED-LMFV-AAEPFEEPLILTVED 272 (772)
Q Consensus 202 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-------~~~kT~~~~~~t~nP~wne~-f~f~-~~~~~~~~l~i~V~d 272 (772)
+.+.|+|++|.=|..++. ..||.|.+-+ +.+||+++..++.||+|+|. |.|. +--+....|+|.||+
T Consensus 703 ~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 458999999998877654 4899998853 57889999887999999975 6663 344566799999999
Q ss_pred ccCCCCCceeEEEEEeccccccccCCCCCCceeEEcccC
Q 004127 273 RVAPNKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKH 311 (772)
Q Consensus 273 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 311 (772)
.. ..+||+-.+++..+.. ..+.+.|...
T Consensus 779 Eg----gK~ig~RIlpvd~l~~-------GYrhv~LRse 806 (1189)
T KOG1265|consen 779 EG----GKFIGQRILPVDGLNA-------GYRHVCLRSE 806 (1189)
T ss_pred cC----CceeeeeccchhcccC-------cceeEEecCC
Confidence 63 5799999999988863 4555666553
No 264
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.14 E-value=0.45 Score=44.79 Aligned_cols=93 Identities=19% Similarity=0.247 Sum_probs=66.1
Q ss_pred CCCCcEEEEEE--CCe----eeeeeeecCCCCCeeccEEEEEec--c-CCCceEEEEEEecCCC-CCceeEEEEEEcccc
Q 004127 59 GSCDPYVEVKL--GNY----KGTTKHFEKKSNPEWNQCFAFSKD--R-IQASVLEVLVKDKDVV-LDDLIGRVMFDLNEV 128 (772)
Q Consensus 59 ~~~dpyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l 128 (772)
..++-||.+.+ +++ ..+|+.+.-+..+.|||.+.|++. + +.+..|.|+|||.... +...+|.++++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45778888755 443 236666666678899999999973 3 3468899999998765 677999999988764
Q ss_pred CCCCCCCCCCCCeEEEeecCCCCceeeeEEEEEEEeeecCCCcC
Q 004127 129 PKRIPPDSPLAPQWYRLEDRKGDKVKTGELMLAVWMGTQADEAF 172 (772)
Q Consensus 129 ~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~ 172 (772)
. + .|. .|...+.+|....+|+..
T Consensus 108 ~-g------------~Lr--------~G~~~l~lw~~~~~d~~~ 130 (159)
T cd08397 108 D-G------------TLR--------RGRQKLRVWPDVEADGSI 130 (159)
T ss_pred C-C------------cEe--------cCCEEEEEEeCCCCCCcc
Confidence 2 1 111 288888888776666543
No 265
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.81 E-value=1.3 Score=40.86 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=77.6
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEE---EEeecc-cCCCCCeecceEEEEeeC---C------CcEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKW---VRTRTI-VDSFGPRWNEQYTWEVFD---P------CTVIT 429 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~---~~T~~~-~~t~~P~Wne~~~~~v~~---~------~~~l~ 429 (772)
-.+.|.|++..+++.. ...-||+...|+.. ..|... ..+..-.|||.|.+.+.- . .-.+.
T Consensus 7 f~~~l~i~~l~~~p~~-------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 7 FQFDLTIHELENLPSS-------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred EEEEEEEEEeECcCCC-------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 3677888888888751 23445666666653 455543 356789999999988761 1 23588
Q ss_pred EEEEeCCcCCCCCCCCCCcccEEEEEecCcccc--CceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 430 VGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET--DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 430 i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
|.|+....-+ +...+|.+.|+|+++.+ .......++|... .+....+++.+++.+
T Consensus 80 ~~v~~~~~~~------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 80 FSVFEVDGSG------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSE 136 (143)
T ss_pred EEEEEecCCC------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEE
Confidence 8898874211 33699999999999976 3566777887653 234467888887755
No 266
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.81 E-value=0.67 Score=38.30 Aligned_cols=63 Identities=29% Similarity=0.402 Sum_probs=50.6
Q ss_pred CCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCCCCceeEEEEEEcccc
Q 004127 61 CDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEV 128 (772)
Q Consensus 61 ~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l 128 (772)
++..+.+++.+ ...+|.-.. -.+..|++.|.+.++. +.+|+|.||=+|. ..+.|...+.|.+.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhh
Confidence 67889999998 577887653 3688999999999886 6889999998764 45778888888884
No 267
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.70 E-value=0.19 Score=50.67 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=71.3
Q ss_pred ecCcCceeEEEEEEEEeecCCCC--CCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEe
Q 004127 33 YDLVEQMQYLYVRVVKAKDLPGK--DVTGSCDPYVEVKLGNY-KGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKD 109 (772)
Q Consensus 33 ~~~~~~~~~L~V~v~~a~~L~~~--~~~~~~dpyv~v~~~~~-~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d 109 (772)
.+++...|+|.++++++++|.-. ..+-+-+-||++.+..+ +.||.+.....--.|.|+|..++.. .+.+.+-||.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvyS 121 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYS 121 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEee
Confidence 46677889999999999999643 33556789999999874 6788887777778899999998865 4678888988
Q ss_pred cCCC-CCceeEEEEEEccccCC
Q 004127 110 KDVV-LDDLIGRVMFDLNEVPK 130 (772)
Q Consensus 110 ~~~~-~d~~lG~~~i~l~~l~~ 130 (772)
.+.- +.++.-...+.+..+..
T Consensus 122 W~pq~RHKLC~~g~l~~~~v~r 143 (442)
T KOG1452|consen 122 WPPQRRHKLCHLGLLEAFVVDR 143 (442)
T ss_pred cCchhhccccccchhhhhhhhh
Confidence 8765 55554333444444443
No 268
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.21 E-value=0.51 Score=44.46 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=59.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEE--ECCe----eeeeeeecCCCCCeeccEEEEEe--cc-CCCceEEEEEEecC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVK--LGNY----KGTTKHFEKKSNPEWNQCFAFSK--DR-IQASVLEVLVKDKD 111 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~--~~~~----~~kT~~~~~t~nP~Wne~f~f~v--~~-~~~~~L~i~V~d~~ 111 (772)
.++|++....++...+ ....+-||.+. .|++ ...|+......++.|||.+.|++ .+ +.+..|.|.||+..
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5778888888876522 23456677664 4553 23444444447899999999986 23 34678999999976
Q ss_pred CC---CCceeEEEEEEcccc
Q 004127 112 VV---LDDLIGRVMFDLNEV 128 (772)
Q Consensus 112 ~~---~d~~lG~~~i~l~~l 128 (772)
.. ++..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 54 357899998888764
No 269
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.82 E-value=1 Score=42.39 Aligned_cols=89 Identities=17% Similarity=0.290 Sum_probs=60.0
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCEE----EEeecccCCCCCeecceEEEEee--C-C-CcEEEEEEE
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGVF 433 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~~----~~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v~ 433 (772)
.++|.+....++... .....+-||.+.+ |++. ..|.....+.++.|||.+.|++. + | ...|.|.||
T Consensus 9 ~~~i~i~~~~~~~~~----~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~ 84 (156)
T cd08380 9 NLRIKIHGITNINLL----DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIY 84 (156)
T ss_pred CeEEEEEeecccccc----CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEE
Confidence 567778888777541 1224666776644 6653 24444433478999999999865 3 3 678999999
Q ss_pred eCCcCCCCCCCCCCcccEEEEEecCcc
Q 004127 434 DNGHIHGQGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 434 D~~~~~~~~~~~~~~~lG~~~i~l~~l 460 (772)
+.+..+ ..++..||.+.++|-+-
T Consensus 85 ~~~~~~----~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 85 AVSEPG----SKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEecCC----CCcceEEEEEeEEeEcc
Confidence 976421 01468899999999874
No 270
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.65 E-value=1.2 Score=42.68 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=58.0
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCEE---EEeecccCCCCCeecceEEEEee--C-C-CcEEEEEEEe
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQKW---VRTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGVFD 434 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~~---~~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v~D 434 (772)
.++|+|.++..+ .. +......-||.+.+ |+.. .+|....-+.++.|||-+.|++. + | ...|.|.||+
T Consensus 11 ~friki~~~~~~-~~---~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 11 KFRVKILGIDIP-VL---PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CEEEEEEeeccc-Cc---CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 577788887633 32 21222345555533 6554 36666666778999998888876 3 3 6789999999
Q ss_pred CCcCCC----------CCCCCCCcccEEEEEecCcc
Q 004127 435 NGHIHG----------QGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 435 ~~~~~~----------~~~~~~~~~lG~~~i~l~~l 460 (772)
...... +..++.+..||.+.+.|-+-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEcC
Confidence 632110 00123467888888888763
No 271
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.59 E-value=0.49 Score=44.57 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=51.4
Q ss_pred CcCcEEEEEE--CCEE----EEeecccCCCCCeecceEEEEee--C-C-CcEEEEEEEeCCcCCCCCCCCCCcccEEEEE
Q 004127 386 TTDAYCVAKY--GQKW----VRTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGVFDNGHIHGQGGGGKDSRIGKVRI 455 (772)
Q Consensus 386 ~~dpyv~v~~--~~~~----~~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i 455 (772)
.+|-||.+.+ |++- ..|..+.-+..+.|||-+.|+|. + | ...|.|.|||.+.. ++...||.+.+
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~------~~~~~vg~~~~ 102 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT------GKAVPFGGTTL 102 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC------CCceEEEEEEE
Confidence 4777877754 6654 36666665678899999888876 3 3 67899999997642 25678999999
Q ss_pred ecCcc
Q 004127 456 RLSTL 460 (772)
Q Consensus 456 ~l~~l 460 (772)
+|-+-
T Consensus 103 ~lFd~ 107 (159)
T cd08397 103 SLFNK 107 (159)
T ss_pred eeECC
Confidence 98764
No 272
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.33 E-value=1.3 Score=42.26 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=45.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEE--EECCee---eeeeeecCCCCCeeccEEEEEec--c-CCCceEEEEEEecC
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEV--KLGNYK---GTTKHFEKKSNPEWNQCFAFSKD--R-IQASVLEVLVKDKD 111 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v--~~~~~~---~kT~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~i~V~d~~ 111 (772)
.++|+|..+.++. .+......-||++ +.|++. .+|.....+.++.|||.+.|++. + +....|.|.||+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4777888876433 2222233456665 335542 36666666778999999999872 3 34688999999974
No 273
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=90.49 E-value=1.1 Score=42.83 Aligned_cols=88 Identities=20% Similarity=0.175 Sum_probs=60.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEE--ECCee----eeeeeec----CCCCCeeccEEEEEec---cCCCceEEEEE
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVK--LGNYK----GTTKHFE----KKSNPEWNQCFAFSKD---RIQASVLEVLV 107 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~--~~~~~----~kT~~~~----~t~nP~Wne~f~f~v~---~~~~~~L~i~V 107 (772)
.+.|+|..+.+++........+-||.+. .|++. ..|+... -...+.|||.+.|++. -+.+..|.|.+
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 6889999999999876545678888874 45542 3444322 1235779999999872 23468899999
Q ss_pred EecCCC----------CCceeEEEEEEcccc
Q 004127 108 KDKDVV----------LDDLIGRVMFDLNEV 128 (772)
Q Consensus 108 ~d~~~~----------~d~~lG~~~i~l~~l 128 (772)
|+.... ++..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 997643 235777777776653
No 274
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=89.83 E-value=0.38 Score=55.92 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=83.8
Q ss_pred CCcCcEEEEEECCEE-EEeecccCC-CCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcccc
Q 004127 385 GTTDAYCVAKYGQKW-VRTRTIVDS-FGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLET 462 (772)
Q Consensus 385 g~~dpyv~v~~~~~~-~~T~~~~~t-~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~ 462 (772)
..+++|+.+.+.... .+|..+.+. .+|.|.+.|..........+++.|-+.+..| ....+|.+.++...+..
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G------~s~~w~~v~~s~~~~~~ 209 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG------WSKRWGRVKISFLQYCS 209 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc------ceeEEEEeccchhhhhc
Confidence 347999999997765 688888887 7999999998888888999999999988764 68899999999999999
Q ss_pred CceEeeeEeeeecCCCCcccccEEEEEEEEeecc
Q 004127 463 DRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTCSS 496 (772)
Q Consensus 463 ~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 496 (772)
+.....|+++...+.+...+.-.+.+.+.|.+..
T Consensus 210 ~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 210 GHRIGGWFPILDNDGKPHQKGSNESLRLGFTPME 243 (887)
T ss_pred cccccceeeeeccCCccccCCcccceEEeeEeec
Confidence 8888999999776543332323455556665554
No 275
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=88.77 E-value=2 Score=41.09 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=61.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCccEEEEEE--CCeee----eecccc--C-CCCCCceeceeEEEee---CCCCCcEEEEE
Q 004127 203 YVRVNIIEAQDLLPSDKSRFPEVFVKAIL--GNQAS----RTRISP--S-KTINPMWNEDLMFVAA---EPFEEPLILTV 270 (772)
Q Consensus 203 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l--~~~~~----kT~~~~--~-~t~nP~wne~f~f~~~---~~~~~~l~i~V 270 (772)
.+.|+|.++.+++........|-||++.+ |++.. .|+... + -...+.|||...|.+. -+.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 47899999999988765556788888854 55432 333211 1 1235779999988773 24466899999
Q ss_pred EEccCCC---------CCceeEEEEEecccc
Q 004127 271 EDRVAPN---------KDEVLGKCLIPLQAV 292 (772)
Q Consensus 271 ~d~d~~~---------~d~~iG~~~i~l~~l 292 (772)
|+....+ .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9876543 457899998887764
No 276
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=88.48 E-value=3.6 Score=37.99 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=44.6
Q ss_pred cEEEE--EECCEE-----EEeecccCC-CCCeecceEEEEee--C-C-CcEEEEEEEeCCcCCCCCCCCCC----cccEE
Q 004127 389 AYCVA--KYGQKW-----VRTRTIVDS-FGPRWNEQYTWEVF--D-P-CTVITVGVFDNGHIHGQGGGGKD----SRIGK 452 (772)
Q Consensus 389 pyv~v--~~~~~~-----~~T~~~~~t-~~P~Wne~~~~~v~--~-~-~~~l~i~v~D~~~~~~~~~~~~~----~~lG~ 452 (772)
-||.+ ..|++. ..|..+.-+ .++.|||.+.|++. + | ...|.|.||+.+... .. ..||.
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~------~~~~~~~~lgw 77 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK------KSKKKKVPLGW 77 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST------TT--EEEEEEE
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC------ccccceeEEEE
Confidence 34444 336654 256555555 79999999888876 3 3 678999999976532 22 68999
Q ss_pred EEEecCcc
Q 004127 453 VRIRLSTL 460 (772)
Q Consensus 453 ~~i~l~~l 460 (772)
+.++|-+.
T Consensus 78 ~n~~lFd~ 85 (142)
T PF00792_consen 78 VNLPLFDY 85 (142)
T ss_dssp EEEESB-T
T ss_pred EEEEeECC
Confidence 99999875
No 277
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=87.92 E-value=2.4 Score=39.12 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=49.0
Q ss_pred eeeeecCC-CCCeeccEEEEEe--cc-CCCceEEEEEEecCCC-CC----ceeEEEEEEccccCCCCCCCCCCCCeEEEe
Q 004127 75 TTKHFEKK-SNPEWNQCFAFSK--DR-IQASVLEVLVKDKDVV-LD----DLIGRVMFDLNEVPKRIPPDSPLAPQWYRL 145 (772)
Q Consensus 75 kT~~~~~t-~nP~Wne~f~f~v--~~-~~~~~L~i~V~d~~~~-~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 145 (772)
.|+....+ .++.|||.+.|++ .+ +.+..|.|.||..+.. .. ..||.+.++|-+.... |
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------L 89 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------L 89 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB-------------B
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc-------------c
Confidence 56666555 7999999999987 23 4568899999998776 43 6899999988765211 1
Q ss_pred ecCCCCceeeeEEEEEEEeeecC
Q 004127 146 EDRKGDKVKTGELMLAVWMGTQA 168 (772)
Q Consensus 146 ~~~~~~~~~~G~l~l~~~~~~~~ 168 (772)
. .|...+.++-....
T Consensus 90 -------~-~G~~~L~lW~~~~~ 104 (142)
T PF00792_consen 90 -------R-QGPQKLSLWPDEEP 104 (142)
T ss_dssp -------E-EEEEEEE-EET-TT
T ss_pred -------c-CCCEEEEEEcCCCC
Confidence 1 28888888665443
No 278
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=86.97 E-value=3.3 Score=35.57 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=48.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----eeeeeeecCCCCCeeccEEEEEec---cCCCceEEEEEEecC
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKL--GNY----KGTTKHFEKKSNPEWNQCFAFSKD---RIQASVLEVLVKDKD 111 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~----~~kT~~~~~t~nP~Wne~f~f~v~---~~~~~~L~i~V~d~~ 111 (772)
+.+.+..+.+.........++-||.+.+ |++ ...|+.+.....+.|||.+.|++. -+.+..|.|.||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5667777777766543333578888744 553 335666655667999999999863 334688999999864
No 279
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=86.64 E-value=4.6 Score=39.03 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=33.5
Q ss_pred eeeeeeecCCCCCeeccEEEEEec--cCCCceEEEEEEecCCC
Q 004127 73 KGTTKHFEKKSNPEWNQCFAFSKD--RIQASVLEVLVKDKDVV 113 (772)
Q Consensus 73 ~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~L~i~V~d~~~~ 113 (772)
..+|-+...+.+|.|+|++.+.+. ......|.|++++....
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~ 96 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSN 96 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccc
Confidence 568888889999999999999873 33568999999987643
No 280
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=86.06 E-value=1.6 Score=44.27 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=56.9
Q ss_pred CccEEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCE-EEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcC
Q 004127 361 SIGILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQK-WVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHI 438 (772)
Q Consensus 361 ~~g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~ 438 (772)
..|.|.++++.++||..... -.+-..+-||+++.+.+ ..||.+......-.|.|.|...+.. ..++.+-||.|+..
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQ 125 (442)
T ss_pred ccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCch
Confidence 34899999999999976522 12334789999999765 3677777666677788988887764 45688999999864
No 281
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=83.21 E-value=12 Score=31.19 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=57.0
Q ss_pred CCcCcEEEEEECCEE-EEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccccC
Q 004127 385 GTTDAYCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLETD 463 (772)
Q Consensus 385 g~~dpyv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~~~ 463 (772)
|-++-.++++++++. .+|....- .+..|++.|++.+. .+..|.|.||=.|. ..+-|-..+.|.+...+
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~Ld-RsRELEI~VywrD~---------RslCav~~lrLEd~~~~ 75 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELE-RSRELEIAVYWRDW---------RSLCAVKFLKLEDERHE 75 (98)
T ss_pred cccceEEEEEEcCeEEeecccccc-ccccccceeEEEee-cccEEEEEEEEecc---------hhhhhheeeEhhhhccc
Confidence 346778999998865 57776443 57889999999864 57789999987653 34566667777773222
Q ss_pred ceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 464 RVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 464 ~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
...+|. .+|.+..++.|
T Consensus 76 ----~~~~le--------pqg~l~~ev~f 92 (98)
T cd08687 76 ----VQLDME--------PQLCLVAELTF 92 (98)
T ss_pred ----ceeccc--------cccEEEEEEEe
Confidence 122222 34777777776
No 282
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=83.09 E-value=8.5 Score=33.46 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=50.4
Q ss_pred EEEEEECCEE-EEeecccCCCCCeecceEEEEeeCC--------CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCcc
Q 004127 390 YCVAKYGQKW-VRTRTIVDSFGPRWNEQYTWEVFDP--------CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTL 460 (772)
Q Consensus 390 yv~v~~~~~~-~~T~~~~~t~~P~Wne~~~~~v~~~--------~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l 460 (772)
||.+.+-... .-|.++. ..+|.+|-+..|.|... ...+.|+++..-. .....+|.+.|++.++
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-------~d~~tla~~~i~l~~l 73 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-------SDFETLAAGQISLRPL 73 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-------S-EEEEEEEEE--SHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-------CCeEEEEEEEeechhh
Confidence 6777665544 4555554 88999999988888732 3679999998542 2578899999999998
Q ss_pred cc--CceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 461 ET--DRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 461 ~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
.. +..+.....|.+.. |. ..|.+...++.
T Consensus 74 l~~~~~~i~~~~~l~g~~--~~-~~g~l~y~~rl 104 (107)
T PF11618_consen 74 LESNGERIHGSATLVGVS--GE-DFGTLEYWIRL 104 (107)
T ss_dssp HH--S--EEEEEEE-BSS--S--TSEEEEEEEEE
T ss_pred hcCCCceEEEEEEEeccC--CC-eEEEEEEEEEe
Confidence 53 33456666666543 22 56888877775
No 283
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=82.74 E-value=7.8 Score=33.26 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=44.9
Q ss_pred EEEEEEEecCCCCCccCCCCCCcCcEEEEEE--CCEE----EEeecccCCCCCeecceEEEEee--C-C-CcEEEEEEEe
Q 004127 365 LELGVLSAHGLTPMKTKDGRGTTDAYCVAKY--GQKW----VRTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITVGVFD 434 (772)
Q Consensus 365 l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~--~~~~----~~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i~v~D 434 (772)
+.+.+..+++.... .....+|-||.+.+ |++. ..|..+.-...+.|||-+.|++. + | ...|.|.+|+
T Consensus 13 ~~~~~~~~~~~~l~---~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~ 89 (100)
T smart00142 13 LVITIALIHGIPLN---WSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYE 89 (100)
T ss_pred eEEEEEEeeCCCcc---cccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEE
Confidence 44566666666442 11122578887754 6654 35555554667999999888776 3 3 6789999999
Q ss_pred CC
Q 004127 435 NG 436 (772)
Q Consensus 435 ~~ 436 (772)
..
T Consensus 90 ~~ 91 (100)
T smart00142 90 VK 91 (100)
T ss_pred ee
Confidence 54
No 284
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=81.99 E-value=4.9 Score=38.95 Aligned_cols=58 Identities=10% Similarity=0.124 Sum_probs=35.1
Q ss_pred EEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCc
Q 004127 399 WVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLST 459 (772)
Q Consensus 399 ~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~ 459 (772)
.+.|.+..++.+|.|+|+|.+.+.. +...|.|++++...-. +..++..+|.+.++|.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~---~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE---SKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS---SS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc---ccCccceeEEEEEEeee
Confidence 4678888899999999999998884 3578999999976532 11122799999999987
No 285
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=81.29 E-value=4 Score=39.33 Aligned_cols=40 Identities=13% Similarity=0.265 Sum_probs=32.8
Q ss_pred eeeeeeecCCCCCeeccEEEEEec--cCCCceEEEEEEecCC
Q 004127 73 KGTTKHFEKKSNPEWNQCFAFSKD--RIQASVLEVLVKDKDV 112 (772)
Q Consensus 73 ~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~L~i~V~d~~~ 112 (772)
.++|.+...+.+|.|+|++.+.+. ......|.|+.++...
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 468888999999999999999874 3356889999988654
No 286
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=79.72 E-value=3.4 Score=35.93 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=51.1
Q ss_pred EEEEEECC-eeeeeeeecCCCCCeeccEEEEEecc-------CCCceEEEEEEecCCCCCceeEEEEEEccccCCCCCCC
Q 004127 64 YVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDR-------IQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKRIPPD 135 (772)
Q Consensus 64 yv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~-------~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 135 (772)
||.+.+-+ +...|.++. +.||.+|-+-.|.|.. +.+..+.|+++..-....+.+|.+.+++.++.....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~-- 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNG-- 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCC--
Confidence 45556656 456666665 8899999998888742 235789999998774477899999999999985421
Q ss_pred CCCCCeEEEeecCCCCceeeeEEEEEEEe
Q 004127 136 SPLAPQWYRLEDRKGDKVKTGELMLAVWM 164 (772)
Q Consensus 136 ~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 164 (772)
.....-..|.+.+|+. .|.|...+.+
T Consensus 79 -~~i~~~~~l~g~~~~~--~g~l~y~~rl 104 (107)
T PF11618_consen 79 -ERIHGSATLVGVSGED--FGTLEYWIRL 104 (107)
T ss_dssp ---EEEEEEE-BSSS-T--SEEEEEEEEE
T ss_pred -ceEEEEEEEeccCCCe--EEEEEEEEEe
Confidence 1233445666666653 3888777654
No 287
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=79.11 E-value=5.8 Score=38.39 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=33.5
Q ss_pred eeeeeeecCCCCCeeccEEEEEecc--CCCceEEEEEEecCCC--C--CceeEEEEEEccc
Q 004127 73 KGTTKHFEKKSNPEWNQCFAFSKDR--IQASVLEVLVKDKDVV--L--DDLIGRVMFDLNE 127 (772)
Q Consensus 73 ~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~~L~i~V~d~~~~--~--d~~lG~~~i~l~~ 127 (772)
...|.+...+.+|.|+|+|.+.+.. .....|.|++++...- + +..+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4567788889999999999998843 2467899999997654 2 2688888888776
No 288
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=77.85 E-value=12 Score=35.69 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=55.8
Q ss_pred CCCCcEEEEEECCe-eeeeeeecC--CCCCeeccEEEEEeccCCCceEEEEEEecCCCCCceeEEEEEEccccCCC
Q 004127 59 GSCDPYVEVKLGNY-KGTTKHFEK--KSNPEWNQCFAFSKDRIQASVLEVLVKDKDVVLDDLIGRVMFDLNEVPKR 131 (772)
Q Consensus 59 ~~~dpyv~v~~~~~-~~kT~~~~~--t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~d~~lG~~~i~l~~l~~~ 131 (772)
....-|+++.++++ ..+|+...- ...-.|||.|.+.+... -+.|.++||......+..|+.+.+++-.....
T Consensus 35 ~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 35 QKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSGLSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred hheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccCccceEEEEEEeeCCCCccc
Confidence 34578999999984 567766533 33456899999999764 57899999998877899999999998766543
No 289
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=75.17 E-value=6.8 Score=37.77 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=40.5
Q ss_pred EEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecC
Q 004127 399 WVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLS 458 (772)
Q Consensus 399 ~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~ 458 (772)
.++|.+...+.+|.|+|++.+.+.- +...|.|+++....-. + .....+|.+.++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~---k-~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKD---K-GEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeecc---C-CCCCceEEEEEeec
Confidence 4688899999999999999998873 4667888887754311 1 12256787777774
No 290
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=74.68 E-value=9.3 Score=36.96 Aligned_cols=59 Identities=7% Similarity=0.086 Sum_probs=41.9
Q ss_pred EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecC
Q 004127 398 KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLS 458 (772)
Q Consensus 398 ~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~ 458 (772)
..++|.+.....+|.|+|++.+.+.- +...|.|+++.......+ ......+|.+.++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~k--d~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAK--DKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecccccc--CCCCCceEEEEEeee
Confidence 34888888899999999999998873 467799998775432100 012356888888875
No 291
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=74.17 E-value=14 Score=35.37 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=43.0
Q ss_pred EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCc
Q 004127 398 KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLST 459 (772)
Q Consensus 398 ~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~ 459 (772)
..+.|.+..++.+|.|+|++.+.+.- +...|.|+.++-+.-..+.+......+|.+.++|-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 45778888889999999999998874 356799999986542100011124568888888764
No 292
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=72.92 E-value=7.6 Score=42.34 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=32.8
Q ss_pred ccEEEEEecCc-cccCceEeeeEeeeecCCCCcccccEEEEEEEEee
Q 004127 449 RIGKVRIRLST-LETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRFTC 494 (772)
Q Consensus 449 ~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 494 (772)
.+|.+.|++.. +..+...+.|||+.+...++. ..|.+ +.++++-
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEeee
Confidence 48999999999 677778899999987654433 34666 6777643
No 293
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=70.58 E-value=11 Score=40.82 Aligned_cols=47 Identities=17% Similarity=0.386 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhHH---HHHHhccccCCchhHHHHHHHHHHHHHHHhh
Q 004127 683 IAGRVQTVIGDLATQG---ERFQSLISWRDPRATTLFVTFCLIAAIVLYV 729 (772)
Q Consensus 683 ~~~~vQ~~l~~~a~~~---e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~ 729 (772)
+..++-..|+.+-.++ +++-++++|++|..|..+++++...++..++
T Consensus 11 n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l 60 (359)
T PF06398_consen 11 NFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYL 60 (359)
T ss_pred ChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHH
Confidence 3344555566666666 8899999999999877665555555554443
No 294
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=69.99 E-value=8.5 Score=30.70 Aligned_cols=48 Identities=29% Similarity=0.400 Sum_probs=34.4
Q ss_pred EccccCCCCCCCCCCCCeEEEeecCCCC--ceeeeEEEEEEEeeecCCCcCCC
Q 004127 124 DLNEVPKRIPPDSPLAPQWYRLEDRKGD--KVKTGELMLAVWMGTQADEAFPD 174 (772)
Q Consensus 124 ~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~~~~~~~~d~~~~~ 174 (772)
++..+..+ +++....+|..|.++... ..+ |+|.+++.....+|.....
T Consensus 2 DlgtVY~q--P~H~~~~KW~~L~dP~D~~~G~k-GYlKv~i~Vlg~GD~~~~~ 51 (72)
T PF08151_consen 2 DLGTVYNQ--PDHQFYRKWALLTDPDDTSAGVK-GYLKVDISVLGPGDEPPVE 51 (72)
T ss_pred ceeeeecC--CCCeeEeceEEecCCCCCccCCc-eEEEEEEEEEcCCCcCCCC
Confidence 34445544 356778899999988633 356 9999999998888765443
No 295
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=66.14 E-value=0.49 Score=52.38 Aligned_cols=173 Identities=14% Similarity=0.155 Sum_probs=96.0
Q ss_pred CCccEEEEEECCeeeeeccccCCCCCCceeceeEEEeeCCCC-CcEEEEEEEccCCCCCceeEEEEEeccccccccCCCC
Q 004127 222 FPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAEPFE-EPLILTVEDRVAPNKDEVLGKCLIPLQAVQRRLDHKP 300 (772)
Q Consensus 222 ~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~-~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~ 300 (772)
+.++++...++.+.++|+.... +.+|.|||. .+...+-+. ..+ ....+|.++.++.+-.....-+.
T Consensus 304 ~~~~~~itsf~~~~frt~~~~~-~e~piyNe~-~~E~~~Fqsn~~l-----------~~kiv~~~~~~lndS~A~f~vq~ 370 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISDD-TEKPIYNED-EREDSDFQSNRYL-----------GNKIVGYCELDLNDSYANFVVQR 370 (975)
T ss_pred CCCchheeecchhhhhhhhhcc-ccccccccc-ccccccchhhHHH-----------hhhccccccccccchhhhhhhhh
Confidence 4578999999999999999877 999999997 554433211 112 23456666666654221000000
Q ss_pred CCceeEEcccCccccCccccccccceEEEEEEEcCCccccCCCcccCCCCCccccccccCCccEEEEEEEEecCCCCCcc
Q 004127 301 VNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGILELGVLSAHGLTPMKT 380 (772)
Q Consensus 301 ~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~v~v~~a~~L~~~~~ 380 (772)
.....+..+ + ....+.+.+..-...++++.+.
T Consensus 371 ~~sn~~~~~-p-----------------------------------------------E~~~~sfnl~~~a~sn~~a~r~ 402 (975)
T KOG2419|consen 371 AKSNFFISE-P-----------------------------------------------ESTCKSFNLLDPASSNLPALRN 402 (975)
T ss_pred hhccccccC-c-----------------------------------------------cccceEEEeecCCcccchhhhh
Confidence 000000000 0 0111222222222333333322
Q ss_pred CC--CCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeC--CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEe
Q 004127 381 KD--GRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD--PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIR 456 (772)
Q Consensus 381 ~~--~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~--~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~ 456 (772)
.+ ....+|||.++.+|...+.+.+-....+|..++.-.+.+.+ ..-.+.|.+++...+. -.+.+....+.
T Consensus 403 ~~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~------F~~vvaa~~~~ 476 (975)
T KOG2419|consen 403 RLSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFSEFSDLSFA------FGNVVAANKLA 476 (975)
T ss_pred ccCccccccCchhHhhhhhHHhhhhhhccccchhhhhhhcccccccccCceEeeehHHHHHHH------HHHHHHhhhcc
Confidence 22 24569999999999888888777778888887765566654 3456677777755432 23444445555
Q ss_pred cCccc
Q 004127 457 LSTLE 461 (772)
Q Consensus 457 l~~l~ 461 (772)
+.+..
T Consensus 477 ~~D~~ 481 (975)
T KOG2419|consen 477 WFDML 481 (975)
T ss_pred hhhhc
Confidence 55544
No 296
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=65.35 E-value=19 Score=41.25 Aligned_cols=64 Identities=30% Similarity=0.468 Sum_probs=44.5
Q ss_pred HHHhHHHHHHhccccCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhcCCccCCC-CCCchhh
Q 004127 693 DLATQGERFQSLISWRDPRATTLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHK-LPSVPLN 759 (772)
Q Consensus 693 ~~a~~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~iP~r~i~~~~g~~~~~~P~~r~~-~p~~~~~ 759 (772)
-++.+.-.+.-|-+|++|+.|..++++-+++-++=+++|.-+++++. .+.+|..|.- +|+.+..
T Consensus 107 ~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~~---li~~P~~r~~lFPpap~a 171 (642)
T PF11696_consen 107 GLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLIA---LILSPPARSILFPPAPPA 171 (642)
T ss_pred HHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcccccccCCCCCcc
Confidence 34555667777889999999998888777777777778875554443 3456778864 4655543
No 297
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=65.12 E-value=30 Score=33.41 Aligned_cols=62 Identities=8% Similarity=0.100 Sum_probs=44.0
Q ss_pred EEEEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeCCcCCCC---CCCCCCcccEEEEEecCc
Q 004127 398 KWVRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDNGHIHGQ---GGGGKDSRIGKVRIRLST 459 (772)
Q Consensus 398 ~~~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~~~~~~---~~~~~~~~lG~~~i~l~~ 459 (772)
..+.|.+..++.+|.|+|++.+.+.- +...|.|+.++-+..... .+......+|.+.++|-+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45788888899999999999988873 466799999986532111 011234568888888865
No 298
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=64.54 E-value=34 Score=32.50 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=52.4
Q ss_pred cCcEEEEEECCEE-EEeeccc--CCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccc
Q 004127 387 TDAYCVAKYGQKW-VRTRTIV--DSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLE 461 (772)
Q Consensus 387 ~dpyv~v~~~~~~-~~T~~~~--~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~ 461 (772)
..-|++|.++++. .+|+... ....-.+||.|.+.+..--..|.++||..... .+..|+.+.+++-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~-------~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGL-------SDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCc-------cceEEEEEEeeCCCCc
Confidence 4458899998766 5666543 34456678999999988778899999997752 7899999999987654
No 299
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=62.10 E-value=92 Score=32.60 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=77.5
Q ss_pred CceEEEEEEEEEeecCCCCCCCCCCccEEEEEECCeeeeeccccCCCCCC--ceeceeEEEeeCCCCCcEEEEEEEccCC
Q 004127 199 PKLWYVRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINP--MWNEDLMFVAAEPFEEPLILTVEDRVAP 276 (772)
Q Consensus 199 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP--~wne~f~f~~~~~~~~~l~i~V~d~d~~ 276 (772)
.+...|-|.|.+..++.. ....|+.+..|+...+|..+.. +..- .-.+.....+.. .+..|++.|+-. ++
T Consensus 55 HRkF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpT-sKK~RI~IqqRV~IkIRQ-cDnTLkI~lfKK-kL 126 (508)
T PTZ00447 55 YRTFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPT-NKKNRIHIDQRVDIKIRQ-CDETLRVDLFTT-KL 126 (508)
T ss_pred cceeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEcccccc-CcCceEEEeeeeeeeeee-cCceEEEEEEec-cc
Confidence 455678888888776653 3478999999998888876643 2221 223434444432 456889999876 45
Q ss_pred CCCceeEEEEEeccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCc
Q 004127 277 NKDEVLGKCLIPLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGY 337 (772)
Q Consensus 277 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~ 337 (772)
.+..-||...+++..=. .+..-+..+||.+... +...++++++..-...|
T Consensus 127 vkk~hIgdI~InIn~dI--Idk~FPKnkWy~c~kD---------Gq~~cRIqLSFhKL~ky 176 (508)
T PTZ00447 127 TKKVHIGQIKIDINASV--ISKSFPKNEWFVCFKD---------GQEICKVQMSFYKIQKY 176 (508)
T ss_pred cceeEEEEEEecccHHH--HhccCCccceEEEecC---------CceeeeEEEEehhhhhc
Confidence 56789999999887522 1234557899999653 34467777766543333
No 300
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=62.02 E-value=20 Score=34.41 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=34.2
Q ss_pred eeeeeecCCCCCeeccEEEEEeccC--CCceEEEEEEecCCC------CCceeEEEEEEcc
Q 004127 74 GTTKHFEKKSNPEWNQCFAFSKDRI--QASVLEVLVKDKDVV------LDDLIGRVMFDLN 126 (772)
Q Consensus 74 ~kT~~~~~t~nP~Wne~f~f~v~~~--~~~~L~i~V~d~~~~------~d~~lG~~~i~l~ 126 (772)
++|-+..+ .+|.|+|+|.+.+... ....|.|++++...- ....+|.+.++|-
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 34444444 9999999999988422 468899999997643 1334555444443
No 301
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=61.74 E-value=10 Score=30.26 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=32.1
Q ss_pred eccccccccCCCCCCceeEEcccCccccCccccccccceEEEEEEEcCCc
Q 004127 288 PLQAVQRRLDHKPVNTRWFNLEKHVIVDGEKKETKFSSRIHLRICLDGGY 337 (772)
Q Consensus 288 ~l~~l~~~~~~~~~~~~w~~L~~~~~~g~~~~~~~~~G~l~l~i~~~~~~ 337 (772)
++..+.. ++++....+|..|..+. + ......|++++.+++.+..
T Consensus 2 DlgtVY~-qP~H~~~~KW~~L~dP~---D--~~~G~kGYlKv~i~Vlg~G 45 (72)
T PF08151_consen 2 DLGTVYN-QPDHQFYRKWALLTDPD---D--TSAGVKGYLKVDISVLGPG 45 (72)
T ss_pred ceeeeec-CCCCeeEeceEEecCCC---C--CccCCceEEEEEEEEEcCC
Confidence 4455553 46788899999999873 1 2445689999999997753
No 302
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=61.41 E-value=1.9e+02 Score=34.47 Aligned_cols=104 Identities=14% Similarity=0.237 Sum_probs=65.2
Q ss_pred cEEEEEEEEecCCCCCccCCCCCCcCcEEEEEE----CCEE----EEeecccCCCCCeecceEEEEee--C-C-CcEEEE
Q 004127 363 GILELGVLSAHGLTPMKTKDGRGTTDAYCVAKY----GQKW----VRTRTIVDSFGPRWNEQYTWEVF--D-P-CTVITV 430 (772)
Q Consensus 363 g~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~----~~~~----~~T~~~~~t~~P~Wne~~~~~v~--~-~-~~~l~i 430 (772)
..++|+++.+.++.. ....|-+|.|.. |++. ..|..+..+.+|.||+.+.|.+. | | ...|-|
T Consensus 343 ~~frI~l~~is~~n~------~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~ 416 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL------PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCL 416 (1076)
T ss_pred CceEEEEeeccccCC------CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhhee
Confidence 468888888887633 223556666644 6654 34445556889999998888776 4 3 456777
Q ss_pred EEEeCCcC----------CCCCCCCCCcccEEEEEecCcc----ccCceEeeeEee
Q 004127 431 GVFDNGHI----------HGQGGGGKDSRIGKVRIRLSTL----ETDRVYTHSYPL 472 (772)
Q Consensus 431 ~v~D~~~~----------~~~~~~~~~~~lG~~~i~l~~l----~~~~~~~~~~~L 472 (772)
.||-.... +....++.+..+|.+.+.|-+- ..|+..-+-++.
T Consensus 417 ~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~ 472 (1076)
T KOG0904|consen 417 AIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPS 472 (1076)
T ss_pred eeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCC
Confidence 77764200 0001145677899999888764 466655555554
No 303
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=60.34 E-value=27 Score=33.50 Aligned_cols=40 Identities=8% Similarity=0.008 Sum_probs=32.3
Q ss_pred eeeeeeecCCCCCeeccEEEEEecc--CCCceEEEEEEecCC
Q 004127 73 KGTTKHFEKKSNPEWNQCFAFSKDR--IQASVLEVLVKDKDV 112 (772)
Q Consensus 73 ~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~~L~i~V~d~~~ 112 (772)
...|.+...+.+|.|+|++.+.+.. .....|.|+.|+.+.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 4678888999999999999998742 245789999999654
No 304
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=58.81 E-value=1e+02 Score=34.86 Aligned_cols=117 Identities=20% Similarity=0.296 Sum_probs=79.8
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeCCCcEEEEEEEeCCcCCCCCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFDPCTVITVGVFDNGHIHGQGG 443 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~~~ 443 (772)
.+.|.|.+.+||.... ..-=.||...+.+.+.+|.... ...|.|..+-.|.-..|-..+.+.+|-+.. |..
T Consensus 342 smevvvmevqglksva-----pnrivyctmevegeklqtdqae-askp~wgtqgdfstthplpvvkvklftest---gvl 412 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVA-----PNRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPLPVVKVKLFTEST---GVL 412 (1218)
T ss_pred eeeEEEeeeccccccC-----CCeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCCceeEEEEEeecc---eeE
Confidence 5778889999997642 2244699999999988887543 447999998888888888889999998754 111
Q ss_pred CCCCcccEEEEEecCccccCceEeeeEeeeecCCCCcccccEEEEEEEE
Q 004127 444 GGKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPSGVRKMGEVQLAVRF 492 (772)
Q Consensus 444 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 492 (772)
.-.|.-||++.+.-..-.... ..|+.+.-.+.... ..=+|.++++.
T Consensus 413 aledkelgrvil~ptpns~ks--~ewh~mtvpknsqd-qdlkiklavrm 458 (1218)
T KOG3543|consen 413 ALEDKELGRVILQPTPNSAKS--PEWHTMTVPKNSQD-QDLKIKLAVRM 458 (1218)
T ss_pred EeechhhCeEEEecCCCCcCC--ccceeeecCCCCcC-ccceEEEEEec
Confidence 226778999988655433322 56777754432221 22457777765
No 305
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=58.34 E-value=29 Score=33.38 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=40.7
Q ss_pred EEeecccCCCCCeecceEEEEeeC---CCcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCc
Q 004127 400 VRTRTIVDSFGPRWNEQYTWEVFD---PCTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLST 459 (772)
Q Consensus 400 ~~T~~~~~t~~P~Wne~~~~~v~~---~~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~ 459 (772)
++|-+..+ .+|.|+|++.+.+.. +...|.|++++.+.-..+ +......+|.+.++|-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~-~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQ-GDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEcccccccc-CCCccceEEEEEEeccc
Confidence 44444444 899999999998863 467899999997642100 01246789999999876
No 306
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.35 E-value=79 Score=31.70 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=36.8
Q ss_pred HHHHhHHHHHHhccccCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhcCCccC
Q 004127 692 GDLATQGERFQSLISWRDPRATTLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFR 750 (772)
Q Consensus 692 ~~~a~~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~iP~r~i~~~~g~~~~~~P~~r 750 (772)
..++..+-..+.+..=+|+..+..+.+++++.+.+.-+.=+-.++.+..+..+.=|.+=
T Consensus 131 ~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~Y 189 (230)
T KOG1792|consen 131 VEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLY 189 (230)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchh
Confidence 35666667777788888888888888888888777654433333333333334445443
No 307
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=54.83 E-value=75 Score=28.98 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=62.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEe------------ccCCCceEEEEEEe
Q 004127 42 LYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSK------------DRIQASVLEVLVKD 109 (772)
Q Consensus 42 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v------------~~~~~~~L~i~V~d 109 (772)
|.|+-+.|=|.--.+ ..|-|..|++-|+..+|+.....-==.++|.|.|.- ..+..+.+.|+++.
T Consensus 4 L~i~aVTCPGv~L~~---~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQ 80 (140)
T PF14909_consen 4 LEIHAVTCPGVWLCD---KGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQ 80 (140)
T ss_pred EEEEEEecCCeEeCC---CCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEE
Confidence 556666665544332 458999999999999997664433334799999973 22356789999988
Q ss_pred cCCCCCceeEEEEEEccccCCC
Q 004127 110 KDVVLDDLIGRVMFDLNEVPKR 131 (772)
Q Consensus 110 ~~~~~d~~lG~~~i~l~~l~~~ 131 (772)
...-....|+..+-++.++..-
T Consensus 81 l~~~~g~iLA~ye~n~rDfLfP 102 (140)
T PF14909_consen 81 LVPPAGEILAYYEENTRDFLFP 102 (140)
T ss_pred EeCCCCcEEEEEeccccceEcC
Confidence 6554577888888888887644
No 308
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=54.43 E-value=27 Score=41.35 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=67.4
Q ss_pred CCcEEEEEECC-eeeeeeeecCC-CCCeeccEEEEEeccCCCceEEEEEEecCCCC-CceeEEEEEEccccCCCCCCCCC
Q 004127 61 CDPYVEVKLGN-YKGTTKHFEKK-SNPEWNQCFAFSKDRIQASVLEVLVKDKDVVL-DDLIGRVMFDLNEVPKRIPPDSP 137 (772)
Q Consensus 61 ~dpyv~v~~~~-~~~kT~~~~~t-~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~~-d~~lG~~~i~l~~l~~~~~~~~~ 137 (772)
.++|+.+.+.. ...+|..+.+. .+|.|.+.|....... ...+.+.|.+.+... ...+|.+.++...+..+ .
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~-----~ 211 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG-----H 211 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhcc-----c
Confidence 48899999987 45677777666 6999999998877664 467899998888775 88999999999999876 2
Q ss_pred CCCeEEEeecCCCC
Q 004127 138 LAPQWYRLEDRKGD 151 (772)
Q Consensus 138 ~~~~w~~L~~~~~~ 151 (772)
...+|+++...++.
T Consensus 212 ~~~~~~~Il~~d~~ 225 (887)
T KOG1329|consen 212 RIGGWFPILDNDGK 225 (887)
T ss_pred cccceeeeeccCCc
Confidence 36789998776543
No 309
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.12 E-value=27 Score=41.14 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=12.8
Q ss_pred HHhhhhHHHHHHHhhhh
Q 004127 726 VLYVTPFQVVALLAGIY 742 (772)
Q Consensus 726 ~~~~iP~r~i~~~~g~~ 742 (772)
-++|||.+|++|++-.|
T Consensus 90 ~~~~~p~~~~~~~~~~~ 106 (697)
T PF09726_consen 90 CLFFIPVHWLFFAASTY 106 (697)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 35568999999986555
No 310
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=52.76 E-value=46 Score=32.12 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=31.9
Q ss_pred eeeeeeecCCCCCeeccEEEEEec--cCCCceEEEEEEecC
Q 004127 73 KGTTKHFEKKSNPEWNQCFAFSKD--RIQASVLEVLVKDKD 111 (772)
Q Consensus 73 ~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~L~i~V~d~~ 111 (772)
...|.+...+.+|.|.|++.+.+. ......|.|+.|+..
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 567888889999999999998873 234678999999975
No 311
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=51.62 E-value=1.8e+02 Score=30.46 Aligned_cols=108 Identities=12% Similarity=0.161 Sum_probs=71.5
Q ss_pred EEEEEEEEecCCCCCccCCCCCCcCcEEEEEECCEEEEeecccCCCCC--eecceEEEEeeCCCcEEEEEEEeCCcCCCC
Q 004127 364 ILELGVLSAHGLTPMKTKDGRGTTDAYCVAKYGQKWVRTRTIVDSFGP--RWNEQYTWEVFDPCTVITVGVFDNGHIHGQ 441 (772)
Q Consensus 364 ~l~v~v~~a~~L~~~~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P--~Wne~~~~~v~~~~~~l~i~v~D~~~~~~~ 441 (772)
.|-|.|.+..++.. ...-|+.++.|....+|..+.-+..= .=.+.....++....+|++.||-..-.
T Consensus 59 ~LLVeI~EI~~i~k--------~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv--- 127 (508)
T PTZ00447 59 YLLVKINEIFNINK--------YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT--- 127 (508)
T ss_pred eEEEEehhhhcccc--------ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc---
Confidence 45566666655543 34568899999999988665432221 233566666677778999999997654
Q ss_pred CCCCCCcccEEEEEecCc-c-ccCceEeeeEeeeecCCCCcccccEEEEEE
Q 004127 442 GGGGKDSRIGKVRIRLST-L-ETDRVYTHSYPLLVLHPSGVRKMGEVQLAV 490 (772)
Q Consensus 442 ~~~~~~~~lG~~~i~l~~-l-~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 490 (772)
+...||.+.+.+.. + ...-+...||-+... | ...++|.|++
T Consensus 128 ----kk~hIgdI~InIn~dIIdk~FPKnkWy~c~kD---G-q~~cRIqLSF 170 (508)
T PTZ00447 128 ----KKVHIGQIKIDINASVISKSFPKNEWFVCFKD---G-QEICKVQMSF 170 (508)
T ss_pred ----ceeEEEEEEecccHHHHhccCCccceEEEecC---C-ceeeeEEEEe
Confidence 67899999999875 3 333456789988531 2 2336666555
No 312
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.00 E-value=5.2 Score=45.58 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=63.1
Q ss_pred CCCCcEEEEEECC-eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC-CCceeEEEEEEccccCCCCCCCC
Q 004127 59 GSCDPYVEVKLGN-YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV-LDDLIGRVMFDLNEVPKRIPPDS 136 (772)
Q Consensus 59 ~~~dpyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~-~d~~lG~~~i~l~~l~~~~~~~~ 136 (772)
...+||+.+.+.- +...+.+...+..|.|+++|...+.. ...+.|.|+..... .+.....+++-.+++... .
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~----~ 99 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLL----A 99 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHH----h
Confidence 3468888888875 33455557789999999999999765 57799999987654 555555555544444431 1
Q ss_pred CCCCeEEEeecCCCCceeeeEEEEEEEeee
Q 004127 137 PLAPQWYRLEDRKGDKVKTGELMLAVWMGT 166 (772)
Q Consensus 137 ~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 166 (772)
.....|..++.. |++...+.+..
T Consensus 100 ~~~~~w~~~~~~-------g~~~~~~~~~~ 122 (694)
T KOG0694|consen 100 LEQRLWVLIEEL-------GTLLKPAALTG 122 (694)
T ss_pred hhhhhccccccc-------cceeeeecccC
Confidence 123467776543 77777776544
No 313
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=46.46 E-value=2e+02 Score=32.57 Aligned_cols=100 Identities=23% Similarity=0.321 Sum_probs=71.6
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCCC----C
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDVV----L 114 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~~----~ 114 (772)
..-+.|.|.+.++|+.-.+ +-=.||...+.+++.+|.-.. ..-|.|+..=.|....+ -+.+++.+|..... .
T Consensus 340 a~smevvvmevqglksvap--nrivyctmevegeklqtdqae-askp~wgtqgdfstthp-lpvvkvklftestgvlale 415 (1218)
T KOG3543|consen 340 ALSMEVVVMEVQGLKSVAP--NRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHP-LPVVKVKLFTESTGVLALE 415 (1218)
T ss_pred EeeeeEEEeeeccccccCC--CeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCC-CceeEEEEEeecceeEEee
Confidence 3457788999999986542 234699999999998887653 45799998888877664 47788999887653 7
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeEEEeecCC
Q 004127 115 DDLIGRVMFDLNEVPKRIPPDSPLAPQWYRLEDRK 149 (772)
Q Consensus 115 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 149 (772)
|.-+|.+.+-- .+.....+.|+.+.-++
T Consensus 416 dkelgrvil~p-------tpns~ks~ewh~mtvpk 443 (1218)
T KOG3543|consen 416 DKELGRVILQP-------TPNSAKSPEWHTMTVPK 443 (1218)
T ss_pred chhhCeEEEec-------CCCCcCCccceeeecCC
Confidence 78888876542 22233456899887665
No 314
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=40.87 E-value=47 Score=33.90 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=29.5
Q ss_pred EEEEEEEEeecchhHHhhhccCCCCCcc-ccCCCCChhHHHHHHHHHHHH
Q 004127 485 EVQLAVRFTCSSLINMLHMYSQPLLPKM-HYIHPLSVIQLDSLRHQAMQI 533 (772)
Q Consensus 485 ~i~l~~~f~~~~~~~~~~~~~~p~~p~~-~y~~~~~~~~~~~~r~~~~~~ 533 (772)
.+.+.|+||.++ +.|..|.| ||..|..+++|.+--.+...+
T Consensus 33 nl~vaIDfT~SN--------g~p~~~~SLHy~~~~~~N~Yq~aI~~vg~i 74 (254)
T cd01459 33 NLIVAIDFTKSN--------GWPGEKRSLHYISPGRLNPYQKAIRIVGEV 74 (254)
T ss_pred eEEEEEEeCCCC--------CCCCCCCCcccCCCCCccHHHHHHHHHHHH
Confidence 355666666554 59999999 999998899998755444333
No 315
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.86 E-value=30 Score=30.07 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 004127 670 SDIVRMRYDRLRSIAGRV 687 (772)
Q Consensus 670 ~~~~~~~~~~l~~~~~~v 687 (772)
-+++.+|+.+|+.....+
T Consensus 38 ~e~L~~kV~aLKsLs~dI 55 (118)
T KOG3385|consen 38 AESLQQKVKALKSLSLDI 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467888888888866444
No 316
>PRK09458 pspB phage shock protein B; Provisional
Probab=40.54 E-value=1.3e+02 Score=24.13 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 004127 675 MRYDRLRSIAGRVQTVIGDLATQ 697 (772)
Q Consensus 675 ~~~~~l~~~~~~vQ~~l~~~a~~ 697 (772)
++++.|.+.+.+.|.-++.+-.+
T Consensus 42 ~~L~~L~~~A~rm~~RI~tLE~I 64 (75)
T PRK09458 42 QRLAQLTEKAERMRERIQALEAI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544333
No 317
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=37.09 E-value=1.9e+02 Score=22.86 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccc
Q 004127 674 RMRYDRLRSIAGRVQTVIGDLATQGERFQSLISW 707 (772)
Q Consensus 674 ~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w 707 (772)
.++++++.......+..+..++.-++++.+...|
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666677788899999999999988
No 318
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=36.54 E-value=52 Score=37.99 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=39.7
Q ss_pred HHHHHHHHHhHHHHHHhccccCCchhHHHHHHHHHHHHH---HHhhhhHHHHHHHhhhhhhcC
Q 004127 687 VQTVIGDLATQGERFQSLISWRDPRATTLFVTFCLIAAI---VLYVTPFQVVALLAGIYVLRH 746 (772)
Q Consensus 687 vQ~~l~~~a~~~e~~~nl~~w~~p~~t~~~~~~l~~~~~---~~~~iP~r~i~~~~g~~~~~~ 746 (772)
++.+|-=+..+...++.+..|++|..|..|+++.+.... +.|++|.-.++++.+...+|+
T Consensus 492 ~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~ 554 (683)
T PF04842_consen 492 MKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRY 554 (683)
T ss_pred HHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555566778888999999999999765544433322 556778766666655555554
No 319
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=36.36 E-value=12 Score=35.50 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=0.0
Q ss_pred HHhccccCCchhHHHHHHHHHHHHHHH
Q 004127 701 FQSLISWRDPRATTLFVTFCLIAAIVL 727 (772)
Q Consensus 701 ~~nl~~w~~p~~t~~~~~~l~~~~~~~ 727 (772)
+++++.|+||..|..++.++.++.+++
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~ 27 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLF 27 (169)
T ss_dssp ---------------------------
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHH
Confidence 468999999999988776666633333
No 320
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=35.71 E-value=3.9e+02 Score=25.28 Aligned_cols=81 Identities=20% Similarity=0.112 Sum_probs=53.4
Q ss_pred EEEEEEEeecCCCCCCCCCCccEEEEEEC----------Ce-eeeeccccCC----CCCCceeceeEEEeeCCC---CCc
Q 004127 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILG----------NQ-ASRTRISPSK----TINPMWNEDLMFVAAEPF---EEP 265 (772)
Q Consensus 204 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~----------~~-~~kT~~~~~~----t~nP~wne~f~f~~~~~~---~~~ 265 (772)
+.=.|.+|.+.. ..+-||+-.+. .. ...|.+.... +..-.||.-|++.+.... -..
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 344566777553 23678887763 12 4555555321 334579988887775433 248
Q ss_pred EEEEEEEccCCCCCceeEEEEEecc
Q 004127 266 LILTVEDRVAPNKDEVLGKCLIPLQ 290 (772)
Q Consensus 266 l~i~V~d~d~~~~d~~iG~~~i~l~ 290 (772)
|.|+||..|..+++...|...+.|-
T Consensus 78 L~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 78 LVLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEEcccCCeEEeEEeEEEeC
Confidence 9999999999999999888766553
No 321
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=31.66 E-value=2.2e+02 Score=25.94 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=25.7
Q ss_pred ChhhHHHHHHHHHHHHH-HHHHHHHHHH-hHHHHHHhccccC
Q 004127 669 GSDIVRMRYDRLRSIAG-RVQTVIGDLA-TQGERFQSLISWR 708 (772)
Q Consensus 669 ~~~~~~~~~~~l~~~~~-~vQ~~l~~~a-~~~e~~~nl~~w~ 708 (772)
+.+++.+|+-+|+++.. .+.+.+...+ .....+++++++.
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~~~ 90 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLFSFS 90 (137)
T ss_pred ccccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999763 3444444433 4445556666553
No 322
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=31.53 E-value=3.9e+02 Score=32.52 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=19.4
Q ss_pred cccCCchhHHHHHHHHHHHHHHHhh
Q 004127 705 ISWRDPRATTLFVTFCLIAAIVLYV 729 (772)
Q Consensus 705 ~~w~~p~~t~~~~~~l~~~~~~~~~ 729 (772)
+.-+||++...++++++++++++..
T Consensus 133 ~a~~DP~aLR~~~~l~lv~a~~~a~ 157 (851)
T TIGR02302 133 LPIHDPWGLRALVVLLLVAAFAYSG 157 (851)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHhC
Confidence 5679999999888888887776543
No 323
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=31.13 E-value=12 Score=42.12 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=49.5
Q ss_pred ccEEEEEEEEecCCCCCccC-CCCCCcCcEEEEEECCEEEEeecccCCCCCeecceEEEEeeC--CCcEEEEEEEeCC
Q 004127 362 IGILELGVLSAHGLTPMKTK-DGRGTTDAYCVAKYGQKWVRTRTIVDSFGPRWNEQYTWEVFD--PCTVITVGVFDNG 436 (772)
Q Consensus 362 ~g~l~v~v~~a~~L~~~~~~-~~~g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne~~~~~v~~--~~~~l~i~v~D~~ 436 (772)
.|...+.++.|.+++..... ...-..++++...+|.+.+||+...++.+|+|||. .+++.+ .+..|...|.+++
T Consensus 279 ~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~ 355 (975)
T KOG2419|consen 279 TGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYC 355 (975)
T ss_pred hhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhccccc
Confidence 35555567777777543221 01234889999999999999999999999999997 555543 2333444444444
No 324
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=29.19 E-value=1.6e+02 Score=24.36 Aligned_cols=28 Identities=7% Similarity=0.322 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhHHHHHHhccccCCch
Q 004127 684 AGRVQTVIGDLATQGERFQSLISWRDPR 711 (772)
Q Consensus 684 ~~~vQ~~l~~~a~~~e~~~nl~~w~~p~ 711 (772)
...++..-+.+.....+++.-.-|+.=+
T Consensus 40 t~~L~~~a~~F~k~a~~l~r~~~~~~~k 67 (89)
T PF00957_consen 40 TEELSDNAKQFKKNAKKLKRKMWWRNYK 67 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555566666543
No 325
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=28.91 E-value=4.6e+02 Score=24.04 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=57.1
Q ss_pred EEEEEEEeecCCCCCCCCCCccEEEEEECCeeeeeccccCCCCCCceeceeEEEeeC------------CCCCcEEEEEE
Q 004127 204 VRVNIIEAQDLLPSDKSRFPEVFVKAILGNQASRTRISPSKTINPMWNEDLMFVAAE------------PFEEPLILTVE 271 (772)
Q Consensus 204 L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~------------~~~~~l~i~V~ 271 (772)
|.|+-+.|-|.--. .+.|-|..|++-|+..+|+-... .--=.++|.|.|.-.. ...+.+.|++.
T Consensus 4 L~i~aVTCPGv~L~---~~~~vyL~v~~lg~~~~T~~~pp-vFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELi 79 (140)
T PF14909_consen 4 LEIHAVTCPGVWLC---DKGDVYLSVCILGQYKRTRCLPP-VFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELI 79 (140)
T ss_pred EEEEEEecCCeEeC---CCCCEEEEEEEcccEeecccCCC-cCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEE
Confidence 34444444443222 23489999999999999998754 3333578999885422 13457889988
Q ss_pred EccCCCCCceeEEEEEeccccc
Q 004127 272 DRVAPNKDEVLGKCLIPLQAVQ 293 (772)
Q Consensus 272 d~d~~~~d~~iG~~~i~l~~l~ 293 (772)
...... ...|+.++-+..++.
T Consensus 80 Ql~~~~-g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 80 QLVPPA-GEILAYYEENTRDFL 100 (140)
T ss_pred EEeCCC-CcEEEEEeccccceE
Confidence 876543 678888888888765
No 326
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.23 E-value=1.6e+02 Score=25.80 Aligned_cols=27 Identities=7% Similarity=0.297 Sum_probs=14.1
Q ss_pred HHHHHHHHHhHHHHHHhccccCCchhH
Q 004127 687 VQTVIGDLATQGERFQSLISWRDPRAT 713 (772)
Q Consensus 687 vQ~~l~~~a~~~e~~~nl~~w~~p~~t 713 (772)
+|..-..+-...-+++--+-|.+-+..
T Consensus 69 L~~~as~F~~~A~klkrk~wWkn~Km~ 95 (116)
T KOG0860|consen 69 LQAGASQFEKTAVKLKRKMWWKNCKMR 95 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444455566788776544
No 327
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.07 E-value=1.7e+02 Score=26.35 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=26.9
Q ss_pred ChhhHHHHHHHHHHHHH-HHHHHHHHHHh-HHHHHHhccccCC
Q 004127 669 GSDIVRMRYDRLRSIAG-RVQTVIGDLAT-QGERFQSLISWRD 709 (772)
Q Consensus 669 ~~~~~~~~~~~l~~~~~-~vQ~~l~~~a~-~~e~~~nl~~w~~ 709 (772)
+.+++.+|+-+++++.. ...+.++..++ .+.-+++++.++-
T Consensus 40 ~dETi~eRi~gLkEivp~g~R~~i~~~~~~av~~~kk~~~fsg 82 (136)
T KOG4111|consen 40 EDETILERIWGLKEIVPQGRRSAIGATAGDAVFVVKKLYSFSG 82 (136)
T ss_pred cchhHHHHHHhhHhhcchhhhhhhhhcchhHHHHHHHHHHhcc
Confidence 56789999999988753 35556665554 3444566665543
No 328
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=26.34 E-value=1e+02 Score=36.66 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=45.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC----Ce----eeeeeeecCCCCCeeccEEEEEec--c-CCCceEEEEEEe
Q 004127 41 YLYVRVVKAKDLPGKDVTGSCDPYVEVKLG----NY----KGTTKHFEKKSNPEWNQCFAFSKD--R-IQASVLEVLVKD 109 (772)
Q Consensus 41 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~----~~----~~kT~~~~~t~nP~Wne~f~f~v~--~-~~~~~L~i~V~d 109 (772)
.++|+++.+.++... .+-|-+|.|..+ ++ ...|..+.+..+|.||+..+|++. + +....|-|.||-
T Consensus 344 ~frI~l~~is~~n~~---~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 344 PFRIKLVGISKVNLP---ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred ceEEEEeeccccCCC---cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 578888888766432 234666666654 33 245666666889999999999873 3 345677777776
Q ss_pred c
Q 004127 110 K 110 (772)
Q Consensus 110 ~ 110 (772)
.
T Consensus 421 v 421 (1076)
T KOG0904|consen 421 V 421 (1076)
T ss_pred e
Confidence 4
No 329
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=25.72 E-value=4.8e+02 Score=23.28 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred CceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeee-eeeeecCCCCCeeccEEEEEe--ccCCCceEEEEEEecCCC
Q 004127 37 EQMQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGNYKG-TTKHFEKKSNPEWNQCFAFSK--DRIQASVLEVLVKDKDVV 113 (772)
Q Consensus 37 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~-kT~~~~~t~nP~Wne~f~f~v--~~~~~~~L~i~V~d~~~~ 113 (772)
...-.|.++=+.-.++|..+..+.+.||++++-++... .|........-.=.+.+.+.+ .-+-..-+.|++|+.+..
T Consensus 1 ~~~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~ 80 (134)
T PF10409_consen 1 PPPRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSS 80 (134)
T ss_dssp -S--EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETT
T ss_pred CCCeeEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCc
Q ss_pred --CCceeEEEEEE
Q 004127 114 --LDDLIGRVMFD 124 (772)
Q Consensus 114 --~d~~lG~~~i~ 124 (772)
.++.+.++.+.
T Consensus 81 ~~~~~~~f~~~Fn 93 (134)
T PF10409_consen 81 SMSKEKMFRFWFN 93 (134)
T ss_dssp ECCCEEEEEEEEE
T ss_pred ccccCeEEEEEEe
No 330
>PF14963 CAML: Calcium signal-modulating cyclophilin ligand
Probab=24.73 E-value=3.3e+02 Score=27.33 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=20.6
Q ss_pred HHHHHHHHHccchhHHHHHHHHHHHHhhccc
Q 004127 603 HILFIILVLYPELILPTVFLYLFLIGIWNFR 633 (772)
Q Consensus 603 ~~~~~~~~~~~~l~~p~~~l~~~~~~~~~~~ 633 (772)
+++=.++|-|..++.|++.+-++.+.++.|.
T Consensus 172 v~VR~fvCkyLsi~~pfl~l~l~~~gl~~~~ 202 (263)
T PF14963_consen 172 VFVRLFVCKYLSIFAPFLTLQLAYMGLSKYF 202 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhc
Confidence 3444556766667788888877766666664
No 331
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=24.45 E-value=1.8e+02 Score=25.46 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=41.7
Q ss_pred CcEEEEEEEeCCcCCCCCCCCCCcccEEEEEecCccc--------------cCceEeeeEeeeecCCCCcccccEEEEEE
Q 004127 425 CTVITVGVFDNGHIHGQGGGGKDSRIGKVRIRLSTLE--------------TDRVYTHSYPLLVLHPSGVRKMGEVQLAV 490 (772)
Q Consensus 425 ~~~l~i~v~D~~~~~~~~~~~~~~~lG~~~i~l~~l~--------------~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 490 (772)
...|.+.+++-.. +........||.+.|++.+.. ........|+|.+.. |. ..|+|.+.+
T Consensus 28 ~~pl~i~~~~~~~---~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~--~~-~~G~I~l~i 101 (112)
T PF14924_consen 28 SFPLYIVVKKVPP---GFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDEN--GN-PVGEISLYI 101 (112)
T ss_pred CCceEEEEEecCC---CCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCC--Cc-eeeeEEEEE
Confidence 3557777665432 000126678999999998863 112456789998642 33 569999999
Q ss_pred EEee
Q 004127 491 RFTC 494 (772)
Q Consensus 491 ~f~~ 494 (772)
+.++
T Consensus 102 RLsc 105 (112)
T PF14924_consen 102 RLSC 105 (112)
T ss_pred EEec
Confidence 9854
No 332
>PHA01159 hypothetical protein
Probab=23.70 E-value=2.9e+02 Score=24.23 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhccccCC
Q 004127 677 YDRLRSIAGRVQTVIGDLATQGERFQSLISWRD 709 (772)
Q Consensus 677 ~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~ 709 (772)
|..++.++..-|..++.+++..+-+++.|-|-.
T Consensus 5 ~~~L~~I~~~~qt~~dFf~~~~d~i~~~fv~~~ 37 (114)
T PHA01159 5 YSALEFIANIGQTFLDFFDVAIDWIKNAFVYGA 37 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456677777888888888888888888776633
No 333
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.51 E-value=4.1e+02 Score=24.73 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=40.7
Q ss_pred CcCcEEEEEE--CCEEEEeecc-----------cCCCC-CeecceEEEEeeC--C--CcEEEEEEEeCCcCCCCCCCCCC
Q 004127 386 TTDAYCVAKY--GQKWVRTRTI-----------VDSFG-PRWNEQYTWEVFD--P--CTVITVGVFDNGHIHGQGGGGKD 447 (772)
Q Consensus 386 ~~dpyv~v~~--~~~~~~T~~~-----------~~t~~-P~Wne~~~~~v~~--~--~~~l~i~v~D~~~~~~~~~~~~~ 447 (772)
.+|-||+.+. |+.|.-+.-- .+-.| -+||--++..... | -..|.+.||-.|.+| +|
T Consensus 25 ~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G------~d 98 (187)
T KOG4027|consen 25 ESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSG------KD 98 (187)
T ss_pred CCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCC------cc
Confidence 4778888765 6666333221 11112 2344333333332 3 357999999999876 99
Q ss_pred cccEEEEEecC
Q 004127 448 SRIGKVRIRLS 458 (772)
Q Consensus 448 ~~lG~~~i~l~ 458 (772)
...|...|.+-
T Consensus 99 ~v~GYg~~hiP 109 (187)
T KOG4027|consen 99 CVTGYGMLHIP 109 (187)
T ss_pred eeeeeeeEecC
Confidence 99999888764
No 334
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=22.43 E-value=2.9e+02 Score=22.33 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004127 676 RYDRLRSIAGRVQTVIGD 693 (772)
Q Consensus 676 ~~~~l~~~~~~vQ~~l~~ 693 (772)
+++.|.+.++++|.-++.
T Consensus 43 ~L~~L~~~a~rm~eRI~t 60 (75)
T PF06667_consen 43 RLQELYEQAERMEERIET 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 335
>PF14851 FAM176: FAM176 family
Probab=21.85 E-value=3e+02 Score=25.68 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=8.1
Q ss_pred ccChhhHHHHHH
Q 004127 593 WKNPLTTILIHI 604 (772)
Q Consensus 593 W~~p~~t~~~~~ 604 (772)
|.+|-+.+++|+
T Consensus 16 ~~~PE~~aLYFv 27 (153)
T PF14851_consen 16 RDNPERFALYFV 27 (153)
T ss_pred HhChHHHHHHHH
Confidence 678887666533
No 336
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=21.54 E-value=42 Score=39.54 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=51.2
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeccEEEEEeccCCCceEEEEEEecCC
Q 004127 39 MQYLYVRVVKAKDLPGKDVTGSCDPYVEVKLGN-----YKGTTKHFEKKSNPEWNQCFAFSKDRIQASVLEVLVKDKDV 112 (772)
Q Consensus 39 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~L~i~V~d~~~ 112 (772)
+|.+.+-+.+|..+.. ..+-||...+.. .+.+|+++.+|..|.||+.++..+.. .+.+++..++++.
T Consensus 758 ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKTEKST 829 (1112)
T ss_pred ccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhhcccc
Confidence 4578888899888763 346788877653 47899999999999999999998865 4556677766553
No 337
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=21.48 E-value=6.9e+02 Score=23.54 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=53.6
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEC--C--------e-eeeeeeecC-----CCCCeeccEEEEEec--cCCC-ceE
Q 004127 43 YVRVVKAKDLPGKDVTGSCDPYVEVKLG--N--------Y-KGTTKHFEK-----KSNPEWNQCFAFSKD--RIQA-SVL 103 (772)
Q Consensus 43 ~V~v~~a~~L~~~~~~~~~dpyv~v~~~--~--------~-~~kT~~~~~-----t~nP~Wne~f~f~v~--~~~~-~~L 103 (772)
.=.|..|.+.. ..+-||+-.+. + . ...|.+.+. +..-.||.-|.+... .+.. +.|
T Consensus 5 ~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 5 IGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 34567777543 33567876652 1 2 456666533 345679988877763 3333 789
Q ss_pred EEEEEecCCC-CCceeEEEEEEccc
Q 004127 104 EVLVKDKDVV-LDDLIGRVMFDLNE 127 (772)
Q Consensus 104 ~i~V~d~~~~-~d~~lG~~~i~l~~ 127 (772)
.|+||..|.. ++.+.|...+.|-.
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLPT 103 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeCC
Confidence 9999999998 99999998888743
No 338
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=20.52 E-value=3e+02 Score=28.30 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccccCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhcCCccCCC
Q 004127 673 VRMRYDRLRSIAGRVQTVIGDLATQGERFQSLISWRDPRATTLFVTFCLIAAIVLYVTPFQVVALLAGIYVLRHPRFRHK 752 (772)
Q Consensus 673 ~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~nl~~w~~p~~t~~~~~~l~~~~~~~~~iP~r~i~~~~g~~~~~~P~~r~~ 752 (772)
+.+..+.+..+..+++...+.+....+...+..+-+ ....+-.+.++ .+.|+|+-++.-++|.|+..-|....+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~n~~m~~LT~~--t~iflPlt~i~g~fGMN~~~~p~~~~~ 267 (292)
T PF01544_consen 194 LRDLLDRIERLLERAESLRERLESLQDLYQSKLSNR----QNRVMKVLTIV--TAIFLPLTFITGIFGMNFKGMPELDWP 267 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH----HHHHHHHHHHH--HHHHHHHHHHTTSTTS-SS---SSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH--HHHHHHHHHHHHHhhCCccCCCccCCc
Confidence 333344444444444444444555555555554443 23333333333 334489988888888886655544433
No 339
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=20.09 E-value=8e+02 Score=26.90 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCcCcEEEEEECCEEEEeecccCCCCCeecc--------eEEE------------EeeCCCcEEEEEEEeCCcCCCCCCC
Q 004127 385 GTTDAYCVAKYGQKWVRTRTIVDSFGPRWNE--------QYTW------------EVFDPCTVITVGVFDNGHIHGQGGG 444 (772)
Q Consensus 385 g~~dpyv~v~~~~~~~~T~~~~~t~~P~Wne--------~~~~------------~v~~~~~~l~i~v~D~~~~~~~~~~ 444 (772)
..+-.||+|++.+--.+|..+.=-.++.-+. .|++ -.......|+|.||--..-..-.-.
T Consensus 34 ssspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~ 113 (460)
T PF06219_consen 34 SSSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVG 113 (460)
T ss_pred CCCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccc
Q ss_pred CCCcccEEEEEecCcc----ccCceEeeeEeeeecCCCCccc-ccEEEEEEEEeecc
Q 004127 445 GKDSRIGKVRIRLSTL----ETDRVYTHSYPLLVLHPSGVRK-MGEVQLAVRFTCSS 496 (772)
Q Consensus 445 ~~~~~lG~~~i~l~~l----~~~~~~~~~~~L~~~~~~g~~~-~G~i~l~~~f~~~~ 496 (772)
.+..+||++.++|.-= ........|..+-..+..+.+. ..++||.++..|..
T Consensus 114 ~~~klLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDP 170 (460)
T PF06219_consen 114 NSGKLLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDP 170 (460)
T ss_pred ccceEEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCC
Done!