Query 004131
Match_columns 772
No_of_seqs 459 out of 2686
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 18:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474 Cl- channel CLC-7 and 100.0 1E-155 2E-160 1252.2 48.9 692 39-758 51-749 (762)
2 KOG0475 Cl- channel CLC-3 and 100.0 6.1E-86 1.3E-90 714.8 41.4 590 79-756 58-695 (696)
3 KOG0476 Cl- channel CLC-2 and 100.0 1.3E-86 2.8E-91 728.2 29.9 662 58-757 78-859 (931)
4 cd03685 ClC_6_like ClC-6-like 100.0 2E-77 4.3E-82 675.0 46.4 461 44-576 1-462 (466)
5 PRK01862 putative voltage-gate 100.0 1.5E-75 3.2E-80 681.0 54.8 543 77-757 26-572 (574)
6 cd03684 ClC_3_like ClC-3-like 100.0 3.4E-68 7.3E-73 597.3 38.4 427 83-573 1-445 (445)
7 cd03683 ClC_1_like ClC-1-like 100.0 1.4E-66 3E-71 581.8 40.6 414 76-575 2-426 (426)
8 cd01036 ClC_euk Chloride chann 100.0 2E-65 4.2E-70 571.4 37.5 407 83-562 1-416 (416)
9 cd01031 EriC ClC chloride chan 100.0 1.5E-58 3.3E-63 515.8 37.2 401 82-566 1-402 (402)
10 PRK01610 putative voltage-gate 100.0 2.6E-58 5.7E-63 512.8 37.4 411 74-568 3-417 (418)
11 PRK05277 chloride channel prot 100.0 2E-57 4.4E-62 511.4 40.6 411 77-568 2-417 (438)
12 COG0038 EriC Chloride channel 100.0 4.2E-55 9E-60 489.5 38.2 411 76-573 23-436 (443)
13 PF00654 Voltage_CLC: Voltage 100.0 2.4E-55 5.2E-60 481.9 30.4 348 130-554 2-354 (355)
14 cd01033 ClC_like Putative ClC 100.0 1.2E-54 2.7E-59 480.2 34.7 384 83-556 1-386 (388)
15 cd01034 EriC_like ClC chloride 100.0 1.7E-54 3.7E-59 480.7 35.4 386 87-562 1-390 (390)
16 cd00400 Voltage_gated_ClC CLC 100.0 3.5E-52 7.7E-57 462.5 33.6 383 83-550 1-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 5.3E-49 1.1E-53 434.6 34.6 376 79-562 2-378 (378)
18 PRK03655 putative ion channel 100.0 8.6E-46 1.9E-50 410.1 33.7 383 73-553 10-397 (414)
19 COG3448 CBS-domain-containing 99.7 1.2E-16 2.7E-21 160.7 16.1 133 581-758 242-374 (382)
20 cd01034 EriC_like ClC chloride 99.7 1E-15 2.2E-20 170.5 17.0 184 73-284 199-382 (390)
21 cd01033 ClC_like Putative ClC 99.7 4.6E-16 1E-20 172.8 13.5 184 74-285 203-386 (388)
22 PRK05277 chloride channel prot 99.6 3E-15 6.5E-20 169.3 13.7 188 74-283 215-402 (438)
23 COG2524 Predicted transcriptio 99.6 4.9E-15 1.1E-19 147.1 11.9 123 581-756 169-291 (294)
24 PRK10892 D-arabinose 5-phospha 99.6 4.1E-14 8.8E-19 154.3 14.9 147 557-754 169-323 (326)
25 PRK11543 gutQ D-arabinose 5-ph 99.6 5.2E-14 1.1E-18 153.2 15.5 148 557-754 164-318 (321)
26 cd00400 Voltage_gated_ClC CLC 99.5 2.6E-14 5.6E-19 159.3 11.6 178 73-276 203-380 (383)
27 COG4109 Predicted transcriptio 99.5 1.5E-14 3.2E-19 149.3 7.7 151 538-758 156-308 (432)
28 PRK01862 putative voltage-gate 99.5 4.5E-14 9.8E-19 165.3 12.7 180 76-283 239-420 (574)
29 PRK01610 putative voltage-gate 99.5 7.3E-14 1.6E-18 156.4 12.8 183 74-284 219-403 (418)
30 COG3620 Predicted transcriptio 99.5 3.1E-13 6.8E-18 124.8 11.2 123 582-757 63-185 (187)
31 cd04641 CBS_pair_28 The CBS do 99.4 9E-13 1.9E-17 121.5 12.9 118 595-754 3-120 (120)
32 cd04618 CBS_pair_5 The CBS dom 99.4 1.2E-12 2.6E-17 116.6 11.5 94 595-753 3-97 (98)
33 cd03682 ClC_sycA_like ClC sycA 99.4 1.1E-12 2.4E-17 145.6 13.7 172 73-281 197-370 (378)
34 cd01031 EriC ClC chloride chan 99.4 7.9E-13 1.7E-17 148.1 12.7 186 73-283 204-389 (402)
35 cd04619 CBS_pair_6 The CBS dom 99.4 1.7E-12 3.8E-17 118.5 12.7 111 595-753 3-113 (114)
36 cd04603 CBS_pair_KefB_assoc Th 99.4 1.8E-12 3.9E-17 117.9 12.7 108 595-753 3-110 (111)
37 PRK07807 inosine 5-monophospha 99.4 1E-12 2.3E-17 148.2 12.4 145 558-758 58-207 (479)
38 TIGR03520 GldE gliding motilit 99.4 1.8E-12 4E-17 144.7 12.9 127 581-761 188-316 (408)
39 PRK15094 magnesium/cobalt effl 99.4 2.4E-12 5.1E-17 137.3 12.5 129 581-761 64-194 (292)
40 cd04600 CBS_pair_HPP_assoc Thi 99.4 6E-12 1.3E-16 116.4 12.0 121 595-754 4-124 (124)
41 cd04639 CBS_pair_26 The CBS do 99.3 7.8E-12 1.7E-16 113.2 12.1 109 595-754 3-111 (111)
42 cd04605 CBS_pair_MET2_assoc Th 99.3 1.4E-11 3E-16 111.4 13.1 106 595-753 4-109 (110)
43 cd04631 CBS_pair_18 The CBS do 99.3 1E-11 2.3E-16 114.9 12.5 123 595-754 3-125 (125)
44 cd04586 CBS_pair_BON_assoc Thi 99.3 6.9E-12 1.5E-16 118.2 11.1 125 595-753 4-134 (135)
45 cd04596 CBS_pair_DRTGG_assoc T 99.3 8.2E-12 1.8E-16 112.7 11.0 104 595-753 4-107 (108)
46 cd04607 CBS_pair_NTP_transfera 99.3 1.4E-11 3E-16 112.1 12.6 109 595-753 4-112 (113)
47 cd04593 CBS_pair_EriC_assoc_ba 99.3 1.5E-11 3.2E-16 112.3 12.5 111 595-754 3-115 (115)
48 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 1.3E-11 2.9E-16 111.9 12.1 110 595-753 3-113 (114)
49 cd04617 CBS_pair_4 The CBS dom 99.3 1.5E-11 3.4E-16 113.0 12.4 110 595-753 3-117 (118)
50 cd04803 CBS_pair_15 The CBS do 99.3 1.3E-11 2.8E-16 113.8 11.6 120 595-754 3-122 (122)
51 cd04623 CBS_pair_10 The CBS do 99.3 2.2E-11 4.8E-16 110.3 12.8 111 595-754 3-113 (113)
52 cd04608 CBS_pair_PALP_assoc Th 99.3 7.9E-12 1.7E-16 116.3 9.9 112 595-755 4-124 (124)
53 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 2.5E-11 5.5E-16 109.3 12.8 105 595-753 4-108 (109)
54 cd04595 CBS_pair_DHH_polyA_Pol 99.3 2.8E-11 6E-16 109.5 13.0 106 595-753 4-109 (110)
55 cd04629 CBS_pair_16 The CBS do 99.3 1.5E-11 3.3E-16 111.7 11.2 111 595-753 3-113 (114)
56 PRK07107 inosine 5-monophospha 99.3 1.7E-11 3.6E-16 139.3 13.8 146 559-755 66-219 (502)
57 cd04801 CBS_pair_M50_like This 99.3 1.9E-11 4E-16 111.4 11.6 108 595-753 3-113 (114)
58 cd04624 CBS_pair_11 The CBS do 99.3 3E-11 6.5E-16 109.5 12.7 109 595-753 3-111 (112)
59 cd04630 CBS_pair_17 The CBS do 99.3 3.6E-11 7.8E-16 109.6 12.9 111 595-753 3-113 (114)
60 cd04615 CBS_pair_2 The CBS dom 99.3 3E-11 6.6E-16 109.7 12.4 110 595-753 3-112 (113)
61 cd04627 CBS_pair_14 The CBS do 99.3 3E-11 6.5E-16 111.8 12.4 119 595-752 3-121 (123)
62 TIGR00400 mgtE Mg2+ transporte 99.3 1.3E-11 2.8E-16 140.0 11.6 124 582-761 129-257 (449)
63 cd04636 CBS_pair_23 The CBS do 99.3 2.7E-11 5.8E-16 113.7 11.9 130 595-754 3-132 (132)
64 cd04614 CBS_pair_1 The CBS dom 99.3 4E-11 8.6E-16 106.3 12.0 94 595-754 3-96 (96)
65 cd04582 CBS_pair_ABC_OpuCA_ass 99.3 4.3E-11 9.4E-16 107.3 12.1 104 595-754 3-106 (106)
66 cd04588 CBS_pair_CAP-ED_DUF294 99.3 6.2E-11 1.3E-15 107.1 13.1 107 595-753 3-109 (110)
67 cd04635 CBS_pair_22 The CBS do 99.3 3.1E-11 6.8E-16 111.2 11.1 120 595-754 3-122 (122)
68 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 2.6E-11 5.7E-16 136.8 12.6 122 580-758 84-205 (475)
69 cd04643 CBS_pair_30 The CBS do 99.3 4E-11 8.6E-16 109.4 11.5 114 595-754 3-116 (116)
70 cd04626 CBS_pair_13 The CBS do 99.3 4.9E-11 1.1E-15 108.0 12.0 108 595-753 3-110 (111)
71 cd04591 CBS_pair_EriC_assoc_eu 99.3 6.3E-11 1.4E-15 106.8 12.5 102 595-754 4-105 (105)
72 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 4.6E-11 1E-15 108.5 11.7 110 595-753 4-113 (114)
73 cd04642 CBS_pair_29 The CBS do 99.3 5.1E-11 1.1E-15 110.8 12.3 123 595-753 3-125 (126)
74 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 8.2E-11 1.8E-15 106.2 12.9 108 595-753 3-110 (111)
75 cd04585 CBS_pair_ACT_assoc2 Th 99.2 6.4E-11 1.4E-15 108.7 12.1 119 595-753 3-121 (122)
76 cd04620 CBS_pair_7 The CBS dom 99.2 7.2E-11 1.6E-15 107.7 12.3 109 595-753 3-114 (115)
77 cd04602 CBS_pair_IMPDH_2 This 99.2 6.1E-11 1.3E-15 108.2 11.7 108 595-753 4-113 (114)
78 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 8.6E-11 1.9E-15 106.1 12.6 108 595-753 3-110 (111)
79 TIGR01137 cysta_beta cystathio 99.2 6.9E-11 1.5E-15 134.9 14.7 146 557-755 307-453 (454)
80 cd04632 CBS_pair_19 The CBS do 99.2 7.7E-11 1.7E-15 109.8 12.4 124 595-754 3-128 (128)
81 cd04599 CBS_pair_GGDEF_assoc2 99.2 6.1E-11 1.3E-15 106.1 11.1 102 595-753 3-104 (105)
82 cd04800 CBS_pair_CAP-ED_DUF294 99.2 1.1E-10 2.3E-15 105.7 12.7 108 595-753 3-110 (111)
83 cd04622 CBS_pair_9 The CBS dom 99.2 1.2E-10 2.5E-15 105.7 12.9 110 595-753 3-112 (113)
84 cd04637 CBS_pair_24 The CBS do 99.2 8E-11 1.7E-15 108.5 11.8 120 595-754 3-122 (122)
85 cd04621 CBS_pair_8 The CBS dom 99.2 8.4E-11 1.8E-15 111.2 12.1 132 595-753 3-134 (135)
86 cd04601 CBS_pair_IMPDH This cd 99.2 5.6E-11 1.2E-15 107.2 10.2 105 595-753 4-109 (110)
87 cd04590 CBS_pair_CorC_HlyC_ass 99.2 1.3E-10 2.9E-15 105.1 12.7 108 595-753 3-110 (111)
88 cd04587 CBS_pair_CAP-ED_DUF294 99.2 1.2E-10 2.5E-15 105.7 12.3 110 595-753 3-112 (113)
89 cd04640 CBS_pair_27 The CBS do 99.2 6.2E-11 1.3E-15 110.4 10.4 116 595-753 3-125 (126)
90 cd04589 CBS_pair_CAP-ED_DUF294 99.2 1.9E-10 4.1E-15 104.1 12.6 109 595-754 3-111 (111)
91 cd04609 CBS_pair_PALP_assoc2 T 99.2 1.6E-10 3.4E-15 104.1 11.9 108 595-754 3-110 (110)
92 PF00654 Voltage_CLC: Voltage 99.2 1.5E-10 3.2E-15 127.7 13.7 186 74-283 162-354 (355)
93 PRK05567 inosine 5'-monophosph 99.2 9.1E-11 2E-15 134.2 12.4 117 585-756 88-205 (486)
94 cd04610 CBS_pair_ParBc_assoc T 99.2 1.7E-10 3.7E-15 103.5 11.7 104 595-754 4-107 (107)
95 cd02205 CBS_pair The CBS domai 99.2 2.3E-10 5E-15 102.6 12.4 111 595-754 3-113 (113)
96 cd04633 CBS_pair_20 The CBS do 99.2 1.7E-10 3.6E-15 106.2 11.5 119 595-754 3-121 (121)
97 COG0517 FOG: CBS domain [Gener 99.2 3.2E-10 7E-15 103.4 13.2 113 588-752 3-117 (117)
98 PLN02274 inosine-5'-monophosph 99.2 1.2E-10 2.6E-15 132.6 12.6 116 590-757 106-223 (505)
99 cd04625 CBS_pair_12 The CBS do 99.2 3E-10 6.5E-15 102.9 12.8 110 595-754 3-112 (112)
100 TIGR01302 IMP_dehydrog inosine 99.2 1.1E-10 2.5E-15 132.0 12.1 122 583-756 79-201 (450)
101 cd04606 CBS_pair_Mg_transporte 99.2 1.2E-10 2.5E-15 105.3 9.8 102 598-754 2-108 (109)
102 cd03684 ClC_3_like ClC-3-like 99.2 5.4E-10 1.2E-14 126.5 16.6 197 74-285 205-427 (445)
103 COG0038 EriC Chloride channel 99.2 2.4E-10 5.1E-15 129.0 13.6 181 77-285 236-418 (443)
104 PRK14869 putative manganese-de 99.2 2E-10 4.4E-15 134.0 13.6 168 584-757 68-305 (546)
105 cd04802 CBS_pair_3 The CBS dom 99.2 5E-10 1.1E-14 101.4 13.3 109 595-753 3-111 (112)
106 PRK11573 hypothetical protein; 99.2 2.4E-10 5.2E-15 127.8 13.3 133 581-762 184-317 (413)
107 PTZ00314 inosine-5'-monophosph 99.2 1.3E-10 2.8E-15 132.3 11.3 120 585-756 97-218 (495)
108 TIGR00393 kpsF KpsF/GutQ famil 99.2 1.9E-10 4E-15 122.0 11.7 115 583-747 154-268 (268)
109 cd04584 CBS_pair_ACT_assoc Thi 99.2 3E-10 6.4E-15 104.4 11.6 118 595-753 3-120 (121)
110 cd04594 CBS_pair_EriC_assoc_ar 99.2 3.9E-10 8.5E-15 101.1 12.1 100 596-753 4-103 (104)
111 PRK03655 putative ion channel 99.1 6.8E-10 1.5E-14 124.0 15.4 172 75-282 222-397 (414)
112 cd04634 CBS_pair_21 The CBS do 99.1 6.4E-10 1.4E-14 106.1 12.6 135 595-753 3-142 (143)
113 COG2905 Predicted signal-trans 99.1 3.5E-10 7.7E-15 124.4 11.0 127 580-757 145-271 (610)
114 cd04638 CBS_pair_25 The CBS do 99.1 8.7E-10 1.9E-14 99.0 11.6 103 595-753 3-105 (106)
115 cd04598 CBS_pair_GGDEF_assoc T 99.1 7.3E-10 1.6E-14 101.5 11.3 112 595-753 3-118 (119)
116 COG1253 TlyC Hemolysins and re 99.0 1.8E-09 4E-14 121.8 13.7 130 581-762 203-334 (429)
117 COG2239 MgtE Mg/Co/Ni transpor 99.0 6.6E-10 1.4E-14 123.6 8.0 125 583-763 131-260 (451)
118 cd03685 ClC_6_like ClC-6-like 99.0 3.4E-09 7.4E-14 120.6 13.9 168 73-284 274-441 (466)
119 COG4536 CorB Putative Mg2+ and 99.0 1.7E-09 3.6E-14 113.7 9.0 130 581-760 197-328 (423)
120 cd01036 ClC_euk Chloride chann 98.9 1.7E-08 3.6E-13 113.6 15.3 174 74-284 234-409 (416)
121 PF00571 CBS: CBS domain CBS d 98.9 4.5E-09 9.6E-14 83.4 6.0 55 702-756 2-56 (57)
122 cd04592 CBS_pair_EriC_assoc_eu 98.8 3.2E-08 6.8E-13 93.4 10.6 116 595-739 3-118 (133)
123 COG4535 CorC Putative Mg2+ and 98.8 1.4E-08 3.1E-13 100.1 7.8 130 581-762 64-195 (293)
124 cd03683 ClC_1_like ClC-1-like 98.7 1.2E-07 2.7E-12 106.9 15.0 177 74-284 230-406 (426)
125 PF00571 CBS: CBS domain CBS d 98.6 1.7E-07 3.7E-12 74.3 6.5 56 586-646 1-56 (57)
126 KOG1764 5'-AMP-activated prote 98.5 7.3E-07 1.6E-11 98.4 11.4 125 593-759 238-362 (381)
127 TIGR01186 proV glycine betaine 98.5 1.5E-06 3.3E-11 95.6 13.1 109 595-758 252-360 (363)
128 COG3448 CBS-domain-containing 98.4 5.9E-07 1.3E-11 91.6 8.3 57 699-755 245-301 (382)
129 PRK10070 glycine betaine trans 98.4 1.4E-06 3.1E-11 97.0 12.2 120 584-758 274-395 (400)
130 KOG2550 IMP dehydrogenase/GMP 98.3 1.4E-06 3E-11 92.6 7.7 110 595-755 118-227 (503)
131 cd04597 CBS_pair_DRTGG_assoc2 98.0 1.2E-05 2.7E-10 73.3 6.1 55 699-753 58-112 (113)
132 PRK14869 putative manganese-de 97.9 5.8E-06 1.3E-10 96.7 3.0 142 582-755 244-392 (546)
133 cd04597 CBS_pair_DRTGG_assoc2 97.8 3.6E-05 7.7E-10 70.3 6.8 55 584-643 58-112 (113)
134 COG2524 Predicted transcriptio 97.8 2.8E-05 6.1E-10 78.4 5.3 59 699-758 172-230 (294)
135 TIGR00400 mgtE Mg2+ transporte 97.8 2.5E-05 5.5E-10 88.9 5.5 112 584-756 195-306 (449)
136 cd04641 CBS_pair_28 The CBS do 97.6 0.00012 2.6E-09 67.0 7.0 49 708-756 2-50 (120)
137 KOG0475 Cl- channel CLC-3 and 97.6 0.00028 6.1E-09 79.4 10.8 172 77-261 310-495 (696)
138 smart00116 CBS Domain in cysta 97.6 0.00014 3.1E-09 54.0 5.8 47 709-755 2-48 (49)
139 cd04618 CBS_pair_5 The CBS dom 97.6 0.00011 2.4E-09 65.1 6.0 47 709-755 3-50 (98)
140 COG3620 Predicted transcriptio 97.6 6.4E-05 1.4E-09 70.4 4.0 61 698-759 64-124 (187)
141 cd04603 CBS_pair_KefB_assoc Th 97.5 0.00013 2.9E-09 65.9 5.7 55 584-643 56-110 (111)
142 cd04592 CBS_pair_EriC_assoc_eu 97.5 0.00023 5E-09 67.0 7.0 50 708-757 2-51 (133)
143 cd04614 CBS_pair_1 The CBS dom 97.5 0.00025 5.4E-09 62.5 6.5 47 708-754 2-48 (96)
144 cd04619 CBS_pair_6 The CBS dom 97.4 0.00021 4.5E-09 64.8 5.7 56 583-643 58-113 (114)
145 cd04608 CBS_pair_PALP_assoc Th 97.4 0.0004 8.6E-09 64.3 7.0 51 707-757 2-52 (124)
146 PRK05567 inosine 5'-monophosph 97.3 0.00063 1.4E-08 78.3 9.2 57 584-645 147-204 (486)
147 cd04624 CBS_pair_11 The CBS do 97.3 0.00058 1.3E-08 61.4 6.9 50 708-757 2-51 (112)
148 cd04605 CBS_pair_MET2_assoc Th 97.3 0.00066 1.4E-08 60.8 7.0 50 707-756 2-51 (110)
149 cd04582 CBS_pair_ABC_OpuCA_ass 97.3 0.00066 1.4E-08 60.3 6.6 48 708-755 2-49 (106)
150 PRK11543 gutQ D-arabinose 5-ph 97.2 0.00043 9.2E-09 75.4 6.0 58 699-756 197-256 (321)
151 PRK10892 D-arabinose 5-phospha 97.2 0.00048 1E-08 75.2 6.4 59 698-756 201-261 (326)
152 cd04613 CBS_pair_SpoIVFB_EriC_ 97.2 0.00073 1.6E-08 60.7 6.4 50 708-757 2-51 (114)
153 cd04623 CBS_pair_10 The CBS do 97.2 0.00093 2E-08 59.9 6.9 50 708-757 2-51 (113)
154 cd04643 CBS_pair_30 The CBS do 97.2 0.00084 1.8E-08 60.6 6.6 48 709-756 3-50 (116)
155 cd04593 CBS_pair_EriC_assoc_ba 97.2 0.00094 2E-08 60.4 6.9 50 708-757 2-51 (115)
156 cd04617 CBS_pair_4 The CBS dom 97.2 0.00099 2.1E-08 60.8 7.0 49 708-756 2-50 (118)
157 cd04600 CBS_pair_HPP_assoc Thi 97.2 0.00062 1.4E-08 62.4 5.4 56 583-643 68-123 (124)
158 cd04606 CBS_pair_Mg_transporte 97.1 0.00081 1.8E-08 60.3 6.0 57 583-644 52-108 (109)
159 cd04607 CBS_pair_NTP_transfera 97.1 0.00085 1.8E-08 60.5 6.0 54 584-642 58-111 (113)
160 cd04642 CBS_pair_29 The CBS do 97.1 0.00081 1.8E-08 62.1 5.8 50 708-757 2-51 (126)
161 cd04625 CBS_pair_12 The CBS do 97.1 0.0012 2.6E-08 59.3 6.5 55 583-643 57-111 (112)
162 cd04586 CBS_pair_BON_assoc Thi 97.1 0.001 2.2E-08 62.2 6.2 50 707-756 2-51 (135)
163 cd04583 CBS_pair_ABC_OpuCA_ass 97.1 0.0015 3.2E-08 58.2 7.0 48 708-755 3-50 (109)
164 cd04620 CBS_pair_7 The CBS dom 97.1 0.00097 2.1E-08 60.3 5.8 56 583-643 57-114 (115)
165 cd04596 CBS_pair_DRTGG_assoc T 97.1 0.0011 2.4E-08 59.3 6.1 56 583-643 52-107 (108)
166 cd04631 CBS_pair_18 The CBS do 97.1 0.0011 2.5E-08 60.7 6.3 50 708-757 2-52 (125)
167 cd04801 CBS_pair_M50_like This 97.1 0.0011 2.5E-08 59.8 6.2 48 709-756 3-51 (114)
168 cd04585 CBS_pair_ACT_assoc2 Th 97.1 0.0011 2.4E-08 60.3 6.1 57 582-643 65-121 (122)
169 cd04630 CBS_pair_17 The CBS do 97.1 0.0013 2.8E-08 59.5 6.5 48 708-755 2-50 (114)
170 cd04632 CBS_pair_19 The CBS do 97.1 0.0014 3.1E-08 60.6 6.9 47 709-755 3-49 (128)
171 cd04615 CBS_pair_2 The CBS dom 97.0 0.0013 2.8E-08 59.2 6.3 56 582-642 56-111 (113)
172 cd04640 CBS_pair_27 The CBS do 97.0 0.0013 2.9E-08 60.7 6.5 46 708-753 2-47 (126)
173 PRK07807 inosine 5-monophospha 97.0 0.0029 6.2E-08 72.2 10.4 58 584-646 148-205 (479)
174 cd04636 CBS_pair_23 The CBS do 97.0 0.0011 2.4E-08 61.8 5.8 50 708-757 2-51 (132)
175 TIGR01137 cysta_beta cystathio 97.0 0.0011 2.3E-08 76.0 6.9 60 698-757 334-393 (454)
176 cd04629 CBS_pair_16 The CBS do 97.0 0.0011 2.5E-08 59.6 5.7 49 708-756 2-50 (114)
177 cd04612 CBS_pair_SpoIVFB_EriC_ 97.0 0.0015 3.3E-08 58.3 6.4 50 707-757 1-50 (111)
178 TIGR01302 IMP_dehydrog inosine 97.0 0.0015 3.3E-08 74.3 7.7 57 698-754 79-138 (450)
179 KOG1764 5'-AMP-activated prote 97.0 0.0031 6.7E-08 69.9 9.8 124 595-757 164-287 (381)
180 cd04588 CBS_pair_CAP-ED_DUF294 97.0 0.0019 4.2E-08 57.7 6.9 49 708-757 2-50 (110)
181 cd04610 CBS_pair_ParBc_assoc T 97.0 0.0016 3.4E-08 57.9 6.2 55 584-643 52-106 (107)
182 TIGR00393 kpsF KpsF/GutQ famil 97.0 0.0011 2.4E-08 70.2 6.0 59 698-756 154-213 (268)
183 cd04627 CBS_pair_14 The CBS do 97.0 0.0013 2.9E-08 60.3 5.8 51 587-642 71-121 (123)
184 cd04621 CBS_pair_8 The CBS dom 97.0 0.0017 3.7E-08 61.1 6.7 56 582-643 79-134 (135)
185 TIGR01303 IMP_DH_rel_1 IMP deh 97.0 0.0049 1.1E-07 70.3 11.3 59 584-647 146-204 (475)
186 COG4175 ProV ABC-type proline/ 96.9 0.0012 2.7E-08 69.2 5.7 113 581-757 271-384 (386)
187 cd04609 CBS_pair_PALP_assoc2 T 96.9 0.0019 4.1E-08 57.5 6.3 48 709-757 3-50 (110)
188 cd02205 CBS_pair The CBS domai 96.9 0.0023 5E-08 56.6 6.8 51 708-758 2-52 (113)
189 cd04590 CBS_pair_CorC_HlyC_ass 96.9 0.0022 4.7E-08 57.5 6.6 51 708-758 2-53 (111)
190 cd04602 CBS_pair_IMPDH_2 This 96.9 0.0018 3.8E-08 58.6 6.0 55 584-643 57-113 (114)
191 cd04604 CBS_pair_KpsF_GutQ_ass 96.9 0.0017 3.7E-08 58.3 5.9 55 584-643 59-113 (114)
192 cd04587 CBS_pair_CAP-ED_DUF294 96.9 0.0016 3.4E-08 58.6 5.5 54 584-642 58-111 (113)
193 cd04802 CBS_pair_3 The CBS dom 96.9 0.0021 4.6E-08 57.6 6.3 54 583-642 57-110 (112)
194 cd04635 CBS_pair_22 The CBS do 96.9 0.002 4.2E-08 58.9 6.1 57 582-643 65-121 (122)
195 cd04639 CBS_pair_26 The CBS do 96.9 0.0017 3.7E-08 58.2 5.6 55 584-643 56-110 (111)
196 cd04626 CBS_pair_13 The CBS do 96.9 0.0024 5.2E-08 57.3 6.5 49 708-756 2-50 (111)
197 cd04803 CBS_pair_15 The CBS do 96.9 0.0018 4E-08 59.0 5.8 57 582-643 65-121 (122)
198 cd04611 CBS_pair_PAS_GGDEF_DUF 96.9 0.0022 4.8E-08 57.3 6.1 56 583-643 55-110 (111)
199 cd04584 CBS_pair_ACT_assoc Thi 96.8 0.0022 4.8E-08 58.4 6.1 48 708-755 2-49 (121)
200 smart00116 CBS Domain in cysta 96.8 0.003 6.4E-08 46.6 5.7 47 595-645 2-48 (49)
201 PRK07107 inosine 5-monophospha 96.8 0.0021 4.6E-08 73.7 7.1 57 583-644 160-218 (502)
202 cd04601 CBS_pair_IMPDH This cd 96.8 0.002 4.3E-08 57.5 5.6 56 583-643 53-109 (110)
203 cd04595 CBS_pair_DHH_polyA_Pol 96.8 0.0027 5.9E-08 56.8 6.4 55 583-643 55-109 (110)
204 cd04800 CBS_pair_CAP-ED_DUF294 96.8 0.0022 4.9E-08 57.4 5.8 55 583-643 56-110 (111)
205 TIGR03415 ABC_choXWV_ATP choli 96.8 0.0038 8.2E-08 69.4 8.7 50 706-757 332-381 (382)
206 cd04622 CBS_pair_9 The CBS dom 96.8 0.002 4.4E-08 57.8 5.4 55 584-643 58-112 (113)
207 COG2905 Predicted signal-trans 96.8 0.0014 3E-08 73.4 5.0 59 700-758 150-208 (610)
208 cd04589 CBS_pair_CAP-ED_DUF294 96.8 0.0029 6.2E-08 56.7 6.3 55 583-643 56-110 (111)
209 cd04591 CBS_pair_EriC_assoc_eu 96.7 0.0026 5.7E-08 56.9 5.6 49 589-643 56-104 (105)
210 cd04633 CBS_pair_20 The CBS do 96.7 0.0032 6.9E-08 57.4 6.2 56 582-643 65-120 (121)
211 cd04599 CBS_pair_GGDEF_assoc2 96.7 0.0035 7.5E-08 55.4 6.2 53 584-642 51-103 (105)
212 cd04634 CBS_pair_21 The CBS do 96.7 0.0029 6.2E-08 60.1 5.9 48 708-756 2-49 (143)
213 COG0517 FOG: CBS domain [Gener 96.7 0.0052 1.1E-07 55.4 7.4 54 705-759 5-58 (117)
214 cd04594 CBS_pair_EriC_assoc_ar 96.7 0.0029 6.3E-08 56.2 5.4 53 585-643 51-103 (104)
215 cd04598 CBS_pair_GGDEF_assoc T 96.6 0.0048 1E-07 56.0 6.4 48 708-756 2-50 (119)
216 cd04637 CBS_pair_24 The CBS do 96.6 0.0046 9.9E-08 56.5 6.1 55 584-643 67-121 (122)
217 COG4109 Predicted transcriptio 96.5 0.0056 1.2E-07 64.8 6.5 63 581-648 246-308 (432)
218 TIGR03520 GldE gliding motilit 96.4 0.0057 1.2E-07 68.8 6.4 57 700-756 192-251 (408)
219 PLN02274 inosine-5'-monophosph 96.3 0.0081 1.7E-07 69.1 7.4 61 583-647 162-223 (505)
220 PRK15094 magnesium/cobalt effl 96.2 0.0077 1.7E-07 64.6 6.1 56 700-755 68-126 (292)
221 PTZ00314 inosine-5'-monophosph 96.1 0.0072 1.6E-07 69.4 5.9 58 583-645 158-217 (495)
222 cd04638 CBS_pair_25 The CBS do 96.0 0.016 3.4E-07 51.5 6.2 53 585-643 53-105 (106)
223 COG2239 MgtE Mg/Co/Ni transpor 95.6 0.015 3.3E-07 65.4 5.4 62 582-648 194-255 (451)
224 TIGR01186 proV glycine betaine 94.9 0.048 1E-06 60.3 6.5 58 585-648 303-360 (363)
225 PRK10070 glycine betaine trans 93.1 0.17 3.8E-06 56.7 6.5 58 585-648 338-395 (400)
226 KOG2550 IMP dehydrogenase/GMP 92.8 0.11 2.4E-06 56.3 4.1 57 583-644 170-226 (503)
227 PRK11573 hypothetical protein; 92.6 0.24 5.2E-06 55.9 6.8 56 701-756 189-247 (413)
228 KOG0474 Cl- channel CLC-7 and 92.0 0.35 7.6E-06 55.3 6.8 90 442-536 181-280 (762)
229 KOG2118 Predicted membrane pro 90.9 0.51 1.1E-05 54.3 7.0 131 580-761 200-333 (498)
230 COG1253 TlyC Hemolysins and re 88.2 1.7 3.8E-05 49.3 8.7 50 595-648 281-330 (429)
231 KOG0476 Cl- channel CLC-2 and 87.6 2.6 5.7E-05 49.5 9.4 62 698-759 587-650 (931)
232 COG1125 OpuBA ABC-type proline 84.7 1.5 3.3E-05 45.4 5.1 42 713-754 267-308 (309)
233 TIGR03415 ABC_choXWV_ATP choli 83.4 2.2 4.7E-05 47.6 6.2 55 585-647 327-381 (382)
234 COG4175 ProV ABC-type proline/ 74.5 5.3 0.00011 42.8 5.3 53 589-647 332-384 (386)
235 COG4535 CorC Putative Mg2+ and 68.1 19 0.00041 36.9 7.3 58 584-647 133-190 (293)
236 COG4536 CorB Putative Mg2+ and 60.7 16 0.00035 39.9 5.6 50 595-648 277-326 (423)
237 COG1125 OpuBA ABC-type proline 56.6 17 0.00037 37.9 4.8 57 582-643 247-307 (309)
238 PF10518 TAT_signal: TAT (twin 55.7 8.5 0.00018 25.2 1.6 23 228-250 3-25 (26)
239 PRK09765 PTS system 2-O-a-mann 52.7 3.4E+02 0.0074 32.6 15.6 20 171-190 458-477 (631)
240 TIGR02865 spore_II_E stage II 51.9 5.1E+02 0.011 31.9 17.3 83 480-566 197-289 (764)
241 PRK02509 hypothetical protein; 39.2 5.1E+02 0.011 32.5 14.1 20 318-337 326-345 (973)
242 PRK11388 DNA-binding transcrip 34.6 58 0.0013 39.1 5.5 146 558-747 14-162 (638)
243 PF01102 Glycophorin_A: Glycop 31.7 64 0.0014 29.8 4.0 23 313-336 60-82 (122)
244 PRK01844 hypothetical protein; 27.9 1.3E+02 0.0029 24.9 4.7 20 318-337 5-24 (72)
245 KOG4267 Predicted membrane pro 25.2 1E+02 0.0023 27.7 4.0 46 475-521 28-73 (110)
246 PRK09400 secE preprotein trans 22.8 2.7E+02 0.0058 22.4 5.5 29 70-98 29-58 (61)
247 COG4129 Predicted membrane pro 22.4 1.9E+02 0.004 31.7 6.2 44 521-564 108-155 (332)
248 PF04550 Phage_holin_2: Phage 21.3 3.9E+02 0.0085 23.2 6.5 50 462-516 23-72 (89)
249 PF10399 UCR_Fe-S_N: Ubiquitin 20.8 59 0.0013 23.9 1.3 19 226-244 8-28 (41)
250 COG3763 Uncharacterized protei 20.6 2.4E+02 0.0053 23.3 4.8 19 319-337 6-24 (71)
251 COG2216 KdpB High-affinity K+ 20.5 1.2E+02 0.0027 34.8 4.3 38 716-754 413-450 (681)
No 1
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-155 Score=1252.22 Aligned_cols=692 Identities=54% Similarity=0.910 Sum_probs=640.9
Q ss_pred CCCCCCCCcccchhchHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh---
Q 004131 39 GSSSVESLDYEVIENYAYREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKS--- 115 (772)
Q Consensus 39 ~~~~~esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~--- 115 (772)
++++|||||||+.||+.|+|+||+|++.+.++|...||+++++||+++|++|.++|..+|.+.++|+..+.+.+.+.
T Consensus 51 k~~~yESLDYei~ENdlf~e~~r~~~k~~~~~y~~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~ 130 (762)
T KOG0474|consen 51 KVCDYESLDYEICENDLFLEDWRTRDKKKGRRYEAVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQ 130 (762)
T ss_pred CCCCccccchhhhcchHHHHHHHhhcccceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999987776554
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHccccccCchhHHHHHHHHhhhhhhccccccccCcc
Q 004131 116 ---YFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEG 192 (772)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EG 192 (772)
++..++.|.++++.++++++.++.+++|.|+||||||||+||||+++|+.+++||+++|++|+++++++|+.+||||
T Consensus 131 ~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEG 210 (762)
T KOG0474|consen 131 KGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEG 210 (762)
T ss_pred cccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHH
Q 004131 193 PLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVF 272 (772)
Q Consensus 193 P~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~ 272 (772)
||||.||+||+.++|++|.+++++|||+|+||||+|||++++||+|||+||+|+||+||+||++||.++||++.++||+|
T Consensus 211 PMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~f 290 (762)
T KOG0474|consen 211 PMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTF 290 (762)
T ss_pred CeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhc
Q 004131 273 FTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLH 352 (772)
Q Consensus 273 ~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~ 352 (772)
|++++++++++.++.+|.+|+|+.|+.+++++|++.+....|+.+|+++|+++|++||++|++||++|....++++. +
T Consensus 291 Fss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~--~ 368 (762)
T KOG0474|consen 291 FSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN--Y 368 (762)
T ss_pred HHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHh--c
Confidence 99999999999999999999999999999999999977779999999999999999999999999666555554443 5
Q ss_pred ccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHH
Q 004131 353 KKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDA 432 (772)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~ 432 (772)
.|.+..|++++++++++|+++.|.+|++.+|+|||.+..+ .+|| +|+||+|+ |||+|+++|+|+||+
T Consensus 369 ~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~--~~~p----------~f~Cp~~~-YNdlAtL~fnt~dda 435 (762)
T KOG0474|consen 369 EKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITE--GQCP----------TFFCPDGE-YNDLATLFFNTNDDA 435 (762)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCccc--ccCc----------cccCCCCc-hhHHHHHHcCCcHHH
Confidence 6677889999999999999999999999999999974322 1455 48999998 999999999999999
Q ss_pred HHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhh
Q 004131 433 IRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAA 512 (772)
Q Consensus 433 i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaa 512 (772)
+|++||.++ ++|++.+|++|++++++++++|||+.+|+|+|+|++++||++||++|+++..++ ++|||.||++|||
T Consensus 436 VrnLFh~~~-~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~~---~id~G~yAllGAA 511 (762)
T KOG0474|consen 436 VRNLFHSPT-NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSYT---NIDPGLYALLGAA 511 (762)
T ss_pred HHHHhcCCC-CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHhh---ccCchHHHHHhHH
Confidence 999999877 999999999999999999999999999999999999999999999999999887 8999999999999
Q ss_pred hhhhccccchhHHhHHHHHhcCCcchHHHHHHHHHHHHHHHhhcCcchHHHHHHhhCCCCCCCCchhhhhccchhhhccC
Q 004131 513 SFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGA 592 (772)
Q Consensus 513 a~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia~~va~~v~~~~~~~iy~~~l~~kg~p~L~~~~~~~l~~l~v~diM~~ 592 (772)
|++||++|||+|+|||++|+| +..+++|+|++.++|+||+|.||+++||.++++|++|+|++++++++++++++|+|++
T Consensus 512 a~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~ 590 (762)
T KOG0474|consen 512 AFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSK 590 (762)
T ss_pred HHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhhhhHhhhccC
Confidence 999999999999999999999 5788888999999999999999999999999999999999999999999999999999
Q ss_pred CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCC-cEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccc
Q 004131 593 QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE-RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSF 671 (772)
Q Consensus 593 ~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~-~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (772)
+ +++++..+++..++++|++++||+|||||+.+.++ +++.|+|.|+|++.+|+++. |.++......+. .....++
T Consensus 591 p-vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~-f~~~~~~~~~~~--~~~~~~~ 666 (762)
T KOG0474|consen 591 P-VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRV-FVEESRSTFDLP--VRRKFTF 666 (762)
T ss_pred C-eEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhh-hhccCccccCcc--hhhcCCH
Confidence 9 99999999999999999999999999999865333 68999999999999999988 554332222110 0011122
Q ss_pred cccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhh
Q 004131 672 SEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 751 (772)
Q Consensus 672 ~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DL 751 (772)
+++++ +.++++|+.++++|+++++|++|+||++|++|++++|+.+++.+||+.|+||+.||++.++++|++||+|+
T Consensus 667 ~d~a~----r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~ 742 (762)
T KOG0474|consen 667 RDFAK----REPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDL 742 (762)
T ss_pred HHhhh----cCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhh
Confidence 22333 56789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhcCC
Q 004131 752 LIEDGED 758 (772)
Q Consensus 752 l~~~~~~ 758 (772)
.++...+
T Consensus 743 ~~~~~l~ 749 (762)
T KOG0474|consen 743 ARYRILG 749 (762)
T ss_pred hhHHHhc
Confidence 9876433
No 2
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-86 Score=714.84 Aligned_cols=590 Identities=32% Similarity=0.542 Sum_probs=465.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---------------------H------H----h-hh-hhhHHHHHHH
Q 004131 79 ALLIGIGTGLAAVFINISVENFAGWKFSLTFS---------------------I------I----Q-KS-YFAGFLVYIL 125 (772)
Q Consensus 79 ~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~---------------------~------~----~-~~-~~~~~~~~~~ 125 (772)
.+++|...|..+.+.+...+| ++|.+.+.. + + + .+ +-..|++|+.
T Consensus 58 ~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC~t~~~~~~c~~~~~w~~~~~~~~~w~~~~~~~~l~y~~ 135 (696)
T KOG0475|consen 58 VLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCCSTFTEDDVCKEWFFWCEHLGLDFSWTGHYIVSYLIYVL 135 (696)
T ss_pred hhHhHhHHHHhhHHHHhhcch--hhccCcccchhhhhhhhheeeeecCccchhhhhhHHHhccccCCCCcchHHHHHHHH
Confidence 578888888888888888776 233222110 0 0 0 01 3458999999
Q ss_pred HHHHHHHHHHHHhhhccccccCCCHHHHHHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHh
Q 004131 126 INLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLL 205 (772)
Q Consensus 126 ~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l 205 (772)
+++.+++++..+++.++|.|.||||||+|+.++|..+++++..+|++.|.++..++++||+|+|||||+||++.|+|+.+
T Consensus 136 ~al~fa~la~~lv~~~AP~A~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~ 215 (696)
T KOG0475|consen 136 WALLFAFLAVSLVKVVAPYACGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIF 215 (696)
T ss_pred HHHHHHHHHHHHhhheehhhhcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCccccchhhhhhc-ccCChhhhhhHHHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 004131 206 GQGGSTKYHLRYRWLQ-VFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (772)
Q Consensus 206 ~~~~~~~~~l~~~~~~-~f~~~~~~r~li~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (772)
++ +++ +-.|+..+|+.++|++|||+|++|||||||++|++|++++++..+.+|+.|+++.+|..+++.
T Consensus 216 s~-----------~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~ 284 (696)
T KOG0475|consen 216 SK-----------IFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRS 284 (696)
T ss_pred hh-----------hhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHee
Confidence 87 333 334778899999999999999999999999999999999999999999999999999999886
Q ss_pred hhhhccCCcccccCCCceEEEecCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhH
Q 004131 285 AMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEAC 364 (772)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (772)
+ ..|+++....|.+. ...+|++.|+++|+++|++||+.|.+|. +++.++.|++...+...+++++++
T Consensus 285 i---------~pf~~~~~vLf~V~-Y~~~W~~~EL~pFi~LGifgGl~G~~~i---r~n~~~~~~rK~~~lg~~pv~ev~ 351 (696)
T KOG0475|consen 285 I---------NPFGNSRLVLFYVD-YDRPWSLFELLPFILLGIFGGLWGAFFI---RLNIRFCRFRKSSKLGKFPVLEVV 351 (696)
T ss_pred e---------cccCCCceEEEEEe-ccCCcccccchHHHHHHHhhhHHHHHHH---HHHHHHHhccchhhccCCcchhHH
Confidence 5 46777777888887 4688999999999999999999999999 555455444322234456899999
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCc
Q 004131 365 VISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHE 444 (772)
Q Consensus 365 ~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~ 444 (772)
.++++|++++|+.|+++-.... ......++|+ ...+-+ +. .+.-.
T Consensus 352 ~vt~iTaiIs~~np~~r~~~~e--~i~~Lf~~C~---------------~~~s~~-------------l~-----~~~~~ 396 (696)
T KOG0475|consen 352 FVTLVTAIISLFNPETRFNMSE--LITILFNKCS---------------PSSSTS-------------LP-----ETTVY 396 (696)
T ss_pred HHHHHHHHHHhcCHHHHhhHHH--HHHHHHhhcC---------------Cccccc-------------Cc-----ccchH
Confidence 9999999999999987310000 0000011222 111000 00 00000
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHHHHHHHHHHHHHHhhh--------cCCCchHHHHHHHhhhhhh
Q 004131 445 YSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYK--------KLNIEEGTYALLGAASFLG 516 (772)
Q Consensus 445 ~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~--------~~~~~~~~~aliGaaa~l~ 516 (772)
-....|+..+++|+++|++|+|+++|+|+|+|||++||+.||++|.++.++.+ ...+.|+.||++||||.|+
T Consensus 397 ~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~Ls 476 (696)
T KOG0475|consen 397 SAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATLS 476 (696)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHhc
Confidence 12345777788999999999999999999999999999999999988877643 2368899999999999999
Q ss_pred ccccchhHHhHHHHHhcCCcchHHHHHHHHHHHHHHHhhc-CcchHHHHHHhhCCCCCCCCchhhhhccchhhhccC---
Q 004131 517 GSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGA--- 592 (772)
Q Consensus 517 g~~r~pis~~vi~~E~Tg~~~~l~pimia~~va~~v~~~~-~~~iy~~~l~~kg~p~L~~~~~~~l~~l~v~diM~~--- 592 (772)
|++|+|+|++|||+|+||++.+++|+|+|+++|+|++|.+ ..+|||++++++|+||++.+.+.. +.-..++|.+
T Consensus 477 GvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l~~k~e~~--~t~~~~v~~p~~~ 554 (696)
T KOG0475|consen 477 GVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFLDSKSEFS--STLAIPVMEPCRS 554 (696)
T ss_pred CcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCcccccccc--cchhhhhhchhcC
Confidence 9999999999999999999999999999999999999999 678999999999999998776544 3334455443
Q ss_pred -CceEEecCc-ccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccc
Q 004131 593 -QKVVSLPRI-IKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHS 670 (772)
Q Consensus 593 -~~vv~v~~~-~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (772)
++...++.+ ++++|+..+|+++++++|||+-++ ++++++|+|+|+|+.-.+.+.....+... . ++
T Consensus 555 ~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~--~sq~lvGfv~rr~l~~~i~~ar~~q~~~~---------~--~~ 621 (696)
T KOG0475|consen 555 ESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE--DSQRLVGFVLRRNLFLAILNARKIQSFIV---------T--TS 621 (696)
T ss_pred chhheeccccceeHHHHHHHHhhcccCCceEEEcc--ccceeEEEEchHHHHHHHhhhccccccce---------e--cc
Confidence 225555554 999999999999999999998553 24899999999999877654320110000 0 00
Q ss_pred ccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhh
Q 004131 671 FSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKD 750 (772)
Q Consensus 671 ~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~D 750 (772)
. .+.++. ..........+|++.+|+.+|++|..++|++.+.++|++.|+++..|.++ |++.|+||+||
T Consensus 622 ~-~f~~~~----------~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~-G~l~Giitkkd 689 (696)
T KOG0475|consen 622 I-YFNDPS----------PSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKN-GILLGIITKKD 689 (696)
T ss_pred c-ccCCCC----------ccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccC-CeeEeeeehHH
Confidence 0 011111 00111223468899999999999999999999999999999999988766 99999999999
Q ss_pred hhhHhc
Q 004131 751 LLIEDG 756 (772)
Q Consensus 751 Ll~~~~ 756 (772)
+++..+
T Consensus 690 ~l~~~r 695 (696)
T KOG0475|consen 690 CLRHTR 695 (696)
T ss_pred HHHhhc
Confidence 998754
No 3
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-86 Score=728.25 Aligned_cols=662 Identities=26% Similarity=0.448 Sum_probs=495.7
Q ss_pred HHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 004131 58 EEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYI 137 (772)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 137 (772)
++|..|..++++++..+.|++.+++|++++++++.+|.+++.+++.........-+.+....|+.|+..++.+.++++.+
T Consensus 78 ~~~~~r~~q~i~r~l~eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f 157 (931)
T KOG0476|consen 78 QEFLTRQMQNIVRKLGEDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGF 157 (931)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777888899999999999999999999999999999877655433323334577888999999999999999
Q ss_pred hhhccccccCCCHHHHHHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhh
Q 004131 138 ITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRY 217 (772)
Q Consensus 138 ~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~ 217 (772)
+++++|+|-||||||||.+|.|+..+++++.||++.|++|..+++|||+++|||||+||+++++++.+++..+ .
T Consensus 158 ~h~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a------~ 231 (931)
T KOG0476|consen 158 CHYIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTA------C 231 (931)
T ss_pred HheeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHH------h
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987422 1
Q ss_pred hhhcccCChhhhhhHHHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCccccc
Q 004131 218 RWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHF 297 (772)
Q Consensus 218 ~~~~~f~~~~~~r~li~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~ 297 (772)
..-..|+|+....+++++|+|.|+|+.|.||+|||||++|++++||..++|||.||+++.++++++.+..|..+.... .
T Consensus 232 ~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~vFR~lavf~v~~~~t-I 310 (931)
T KOG0476|consen 232 QFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFVFRLLAVFFVEAEVT-I 310 (931)
T ss_pred hccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHHHHHHHHHcccchhh-h
Confidence 233467788889999999999999999999999999999999999999999999999999999999987665421110 0
Q ss_pred CCCceEEEecCC-CCCCCChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh--hcccCCccchhhhHHHHHHHHHHH
Q 004131 298 GSGGFIIWDISD-GQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNY--LHKKGNRVKIIEACVISVITSVIS 374 (772)
Q Consensus 298 ~~~~~~~f~~~~-~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 374 (772)
...|+.++ .+.+|++.|+|+|+++|++||++|++|+++.+....+.|.. .++-...+|++.+.+++++.+.+.
T Consensus 311 ----tA~yqT~F~~d~~F~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~sslt 386 (931)
T KOG0476|consen 311 ----TALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFSSLT 386 (931)
T ss_pred ----HHHHhccCCCCCCCCHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHhhee
Confidence 01233332 34589999999999999999999999994433222222211 111122357888999999988877
Q ss_pred hcccc---cccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHH
Q 004131 375 FGLPL---LRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLL 451 (772)
Q Consensus 375 ~~~p~---~~~c~~~~~~~~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~ 451 (772)
|..-. +.+-..-.+...+.+..|. +-..+ ...-.||.+. ..+..+. ..+.-.+..|+
T Consensus 387 fP~GlG~f~aG~l~f~etl~~fF~Nct--w~~~~-~~~~~~~~~~----------------~~hW~~p-~g~~~~f~tL~ 446 (931)
T KOG0476|consen 387 FPPGLGQFLAGRLSFRETLVDFFDNCT--WWVQT-NDSELCPAHI----------------LTHWYHP-EGDVSIFGTLV 446 (931)
T ss_pred cCCcccccccccccHHhHHHHHhhcCe--eeecC-CCcCCCChhh----------------hhhhcCC-CCceeeHHHHH
Confidence 63210 0000000000000000000 00000 0000111111 1111110 01222356799
Q ss_pred HHHHHHHHHHHHHhcCccCcccchhHHHHHHHHHHHHHHHHHHhhh--------cCCCchHHHHHHHhhhhhhccccchh
Q 004131 452 TFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYK--------KLNIEEGTYALLGAASFLGGSMRMTV 523 (772)
Q Consensus 452 ~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~--------~~~~~~~~~aliGaaa~l~g~~r~pi 523 (772)
+|+++||++++++..+.+|+|.|+|.+++||++||++|+.+..++| ...+.||.||++|||||-| +..+|+
T Consensus 447 lf~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAfsG-aVTHTv 525 (931)
T KOG0476|consen 447 LFFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAFSG-AVTHTV 525 (931)
T ss_pred HHHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCCccCccccchhhhhhhhhhcc-ceeeee
Confidence 9999999999999999999999999999999999999998877653 2368899999999999755 555799
Q ss_pred HHhHHHHHhcCCcchHHHHHHHHHHHHHHHhhcCcchHHHHHHhhCCCCCCCCchhh--hhccchhhhccCCceEEecCc
Q 004131 524 SLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYK--MRQMTAKEACGAQKVVSLPRI 601 (772)
Q Consensus 524 s~~vi~~E~Tg~~~~l~pimia~~va~~v~~~~~~~iy~~~l~~kg~p~L~~~~~~~--l~~l~v~diM~~~~vv~v~~~ 601 (772)
|.+||++|+||++..++|+|+|+++|++|+..+..|+||.+++.|++|||+..++.. .+.+.|+|+|.+| +..+..+
T Consensus 526 SvAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~d-v~yI~k~ 604 (931)
T KOG0476|consen 526 SVAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTD-VKYITKD 604 (931)
T ss_pred eEEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeecccc-ceeeecc
Confidence 999999999999999999999999999999999999999999999999999887654 4678899999999 9999999
Q ss_pred ccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCC----------------------CCC
Q 004131 602 IKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL----------------------PCD 659 (772)
Q Consensus 602 ~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~----------------------~~~ 659 (772)
+|.+|+.+.++.++.+.||+||++ ++..|+|.|.|++|..+++++. .++++ ..+
T Consensus 605 ~Ty~elre~l~~~~lR~~PlV~s~--esmiLlGSV~R~~L~~ll~~~i--g~~~r~~~a~~r~r~~~E~~~~~~~~~~~e 680 (931)
T KOG0476|consen 605 TTYRELREALQTTTLRSFPLVESK--ESMILLGSVARRYLTALLQRHI--GPEPRLVEAQKRVRTASEIFLTIFERSKKE 680 (931)
T ss_pred CcHHHHHHHHHhCccceeccccCc--ccceeeehhHHHHHHHHHHhhc--CccHhHHHHHHHhhhhhhchhhhhhhhhcc
Confidence 999999999999889999999986 3588999999999999987742 11111 000
Q ss_pred CCC-----------CCCCc----------c-------------------ccccc------ccc--ccC-CCC--------
Q 004131 660 TRG-----------GSKPI----------S-------------------HSFSE------FVK--PAS-SKG-------- 682 (772)
Q Consensus 660 ~~~-----------~~~~~----------~-------------------~~~~~------~~~--~~~-~~~-------- 682 (772)
+.. ..++. . ++.+. +.. ... .+.
T Consensus 681 e~~~r~p~~~~~~~~~~e~s~~~~~~~et~kp~~p~~~~~p~~~~~lt~~~~sG~~~~~~~s~~~~~~~~~~p~~~~~~l 760 (931)
T KOG0476|consen 681 EPPRRSPSRSEFFTMQRENSDIVTALGETAKPLPPSEQRLPSVVENLTPRTISGTRENALLSLRDMESPLHGPAAEHHPL 760 (931)
T ss_pred CCCCCCccccccccccccccccccccccccCCCCchhccCccccccccccccCCccccccccccccccCCCCCccccccc
Confidence 000 00000 0 00000 000 000 000
Q ss_pred -------CCc-------c--cccCCcc--------ccccccccccc-ccCCCceecCCCCHHHHHHHHHHcCCCEEEEec
Q 004131 683 -------LSI-------D--DIHLSSD--------DMEMYIDLGPF-LNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (772)
Q Consensus 683 -------~~v-------~--di~~~~~--------~~~~~idl~~~-m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd 737 (772)
.++ + +.+...+ .....+|+.+. +|+.|++..+.+||.+++.+|.-+|++|..|++
T Consensus 761 ~~~~~r~~~~~~~~~~~~~~~~d~~~eei~~we~~~l~~~ld~~~~~IDpaPfQLve~TSL~K~HtLFSLLgL~~AYVT~ 840 (931)
T KOG0476|consen 761 HKLLTRQTKVNNKKQSHDDNEYDLSAEEIKEWEEEQLSQKLDLDECAIDPAPFQLVEGTSLYKVHTLFSLLGLNHAYVTS 840 (931)
T ss_pred ccccccccccccccccccccccccChhhhhHHHHHHhccccchhhCCCCCCceeeeccchHHHHHHHHHHhccchhhhcc
Confidence 000 0 0011222 22345666654 689999999999999999999999999999999
Q ss_pred CCCeEEEEEeHhhhhhHhcC
Q 004131 738 RASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~ 757 (772)
. ||++|+|+.|||.+++..
T Consensus 841 ~-GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 841 C-GRLVGVVALKELRKAIEN 859 (931)
T ss_pred c-CcEEEEEEHHHHHHHHHh
Confidence 8 999999999999998866
No 4
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=2e-77 Score=674.96 Aligned_cols=461 Identities=56% Similarity=0.959 Sum_probs=396.8
Q ss_pred CCCcccchhchHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh-hhhHHHH
Q 004131 44 ESLDYEVIENYAYREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKS-YFAGFLV 122 (772)
Q Consensus 44 esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~ 122 (772)
||+||++.||+.+|+|||+|++++...+.+.||++++++|+++|+++.+++..+++++++++....+...+. .+.+|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T cd03685 1 ESLDYEVIENDLFREEWRKRKKKQVLQYEFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLV 80 (466)
T ss_pred CCCCccccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999887754444333 4456677
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHH
Q 004131 123 YILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIA 202 (772)
Q Consensus 123 ~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig 202 (772)
|+.+++++++++++++.+++|+++|||+||+|+++||.+.++.+++|+++.|++++++++++|+|+|||||++|+||++|
T Consensus 81 ~~~~~~~~~li~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig 160 (466)
T cd03685 81 YLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIA 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHH
Confidence 77888889999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHH
Q 004131 203 SLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVV 282 (772)
Q Consensus 203 ~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~ 282 (772)
++++|..++.++++++++|+++++++||++++||+|||+|++||||++|++|++||+.++|+.+..|+.++++++++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va 240 (466)
T cd03685 161 AGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTL 240 (466)
T ss_pred HHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHH
Confidence 99998666566666778888888899999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhccCCcccccCCCceEEEecCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhh
Q 004131 283 RSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIE 362 (772)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (772)
+.+......+....|+.++.+.|.++....++++.|+++++++|++||++|.+|+++++...++++++ +.+.++.|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~-~~~~~~~~~l~ 319 (466)
T cd03685 241 NFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRI-NHKGKLLKVLE 319 (466)
T ss_pred HHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHH
Confidence 87765433222234544444445544334568899999999999999999999995555444433322 11134456777
Q ss_pred hHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCC
Q 004131 363 ACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTI 442 (772)
Q Consensus 363 ~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~ 442 (772)
+++++++++++.+
T Consensus 320 ~~lv~~~~~~~~~------------------------------------------------------------------- 332 (466)
T cd03685 320 ALLVSLVTSVVAF------------------------------------------------------------------- 332 (466)
T ss_pred HHHHHHHHHHHHH-------------------------------------------------------------------
Confidence 7766666654321
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccch
Q 004131 443 HEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMT 522 (772)
Q Consensus 443 ~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~p 522 (772)
...+++++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++.+.+..+.+|+.||++||+|+++|++|+|
T Consensus 333 ----~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~aliGmaa~lag~~raP 408 (466)
T cd03685 333 ----PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLYALLGAAAFLGGVMRMT 408 (466)
T ss_pred ----HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccccCCCchHHHHHHHHHHHhHHhhhh
Confidence 1234556678999999999999999999999999999999999999887766678999999999999999999999
Q ss_pred hHHhHHHHHhcCCcchHHHHHHHHHHHHHHHhhcCcchHHHHHHhhCCCCCCCC
Q 004131 523 VSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESR 576 (772)
Q Consensus 523 is~~vi~~E~Tg~~~~l~pimia~~va~~v~~~~~~~iy~~~l~~kg~p~L~~~ 576 (772)
+|+++|++|+||++++++|+|+++++|+++++.+++++||.+++.||+|||+..
T Consensus 409 lt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 409 VSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred HHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999853
No 5
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=1.5e-75 Score=681.04 Aligned_cols=543 Identities=19% Similarity=0.285 Sum_probs=441.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHH-HHH
Q 004131 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE-IKG 155 (772)
Q Consensus 77 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe-v~~ 155 (772)
++++++|+++|+++.+|+..++++++++|....+........+|++.+.++++++++++++.++..+..+++|+++ +++
T Consensus 26 ~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~~ 105 (574)
T PRK01862 26 IWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYMEA 105 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHHH
Confidence 3789999999999999999999999998864221111111123343445666666777777766667666555554 666
Q ss_pred HHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHh
Q 004131 156 YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTC 235 (772)
Q Consensus 156 ~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~ 235 (772)
+.++ .+.+++|+.+.|++++++++++|+|+|||||++|+||++|+++++ |++. +++++|.+++|
T Consensus 106 ~~~~---~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~ 169 (574)
T PRK01862 106 VALG---DGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGR-----------FAHF--DPPRLRLLVAC 169 (574)
T ss_pred HHcC---CCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHH
Confidence 6655 456778999999999999999999999999999999999999987 4444 56778999999
Q ss_pred hhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCCCCCCC
Q 004131 236 GCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYS 315 (772)
Q Consensus 236 GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 315 (772)
|+|||+||+||||++|++|++|++...|+.+.++++++++++++++.+.+. +.++ .|+++. ...++
T Consensus 170 G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~~-----------g~~~--~~~~~~-~~~~~ 235 (574)
T PRK01862 170 GAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREFA-----------GYQP--PYEMPV-FPAVT 235 (574)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHc-----------CCCc--eeeCCC-cCcCC
Confidence 999999999999999999999999888988999999999988888877542 3333 456652 45688
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCC
Q 004131 316 FEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGI 395 (772)
Q Consensus 316 ~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~ 395 (772)
..++++++++|++||++|.+|+ +.+.+..+++.+.+ ..+++...+.+++++++.++.|++
T Consensus 236 ~~~~~~~~~lGv~~G~~~~~f~---~~~~~~~~~~~~~~--~~~~~~~~~~gl~~g~l~~~~p~~--------------- 295 (574)
T PRK01862 236 GWEVLLFVALGVLCGAAAPQFL---RLLDASKNQFKRLP--VPLPVRLALGGLLVGVISVWVPEV--------------- 295 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHH---------------
Confidence 8999999999999999999999 55555555442222 223455567778888888877765
Q ss_pred CCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccCcccch
Q 004131 396 ECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFV 475 (772)
Q Consensus 396 ~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~ 475 (772)
.| .||+. ++.+++ +...+..++.++++|+++|++|+|+|+|||+|+
T Consensus 296 -----~g-------------~G~~~------------i~~~~~----~~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~ 341 (574)
T PRK01862 296 -----WG-------------NGYSV------------VNTILH----APWTWQALVAVLVAKLIATAATAGSGAVGGVFT 341 (574)
T ss_pred -----hc-------------CCHHH------------HHHHHc----CCchHHHHHHHHHHHHHHHHHHHccCCCccchh
Confidence 12 22432 444443 234566777888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHHHHHHHHHHHhh
Q 004131 476 PGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDA 555 (772)
Q Consensus 476 P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia~~va~~v~~~ 555 (772)
|++++||++|+++|++++.++|....+|+.|+++||+|++++++|+|++++++++|+|+++++++|+|+++++|+++++.
T Consensus 342 P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~ 421 (574)
T PRK01862 342 PTLFVGAVVGSLFGLAMHALWPGHTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARA 421 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887765556788999999999999999999999999999999999999999999999999998
Q ss_pred c-CcchHHHHHHhhCCCCCCCCchhhhhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEE
Q 004131 556 F-SEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIG 634 (772)
Q Consensus 556 ~-~~~iy~~~l~~kg~p~L~~~~~~~l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvG 634 (772)
+ ++++|+.+++.++. +.+.+.+++++++|+|+++ +.+++++++++|+.+.+++++++.+||+|++ ++++|
T Consensus 422 ~~~~~iy~~~~~~~~~----~~~~~~L~~~~V~dim~~~-~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~----g~lvG 492 (574)
T PRK01862 422 LGTTSMYEITLRRHQD----EAERERLRTTQMRELIQPA-QTVVPPTASVADMTRVFLEYPVKYLYVVDDD----GRFRG 492 (574)
T ss_pred hCCCChHHHHHHhccc----cchhhHHhhCcHHHHhcCC-CceeCCCCCHHHHHHHHHhCCCceEEEEcCC----CeEEE
Confidence 8 78999999988754 3356678899999999998 8999999999999999999999999999986 89999
Q ss_pred eeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecC
Q 004131 635 LVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE 714 (772)
Q Consensus 635 iItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~ 714 (772)
+|+++|+.+.+.++. . ....+++++|++++.++++
T Consensus 493 iVt~~dL~~~l~~~~-----~----------------------------------------~~~~~v~dim~~~~~~v~~ 527 (574)
T PRK01862 493 AVALKDITSDLLDKR-----D----------------------------------------TTDKTAADYAHTPFPLLTP 527 (574)
T ss_pred EEEHHHHHHHhhccc-----c----------------------------------------cccchHHHhccCCCeeECC
Confidence 999999987543221 0 0001244558889999999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEecCC--CeEEEEEeHhhhhhHhcC
Q 004131 715 DMSLSKVYNLFRQLGLRHIFVVPRA--SRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 715 ~~sL~~a~~lf~~~glr~lpVVd~~--g~lvGIITr~DLl~~~~~ 757 (772)
+++++++.++|.+++.+++||+|++ ++++|+||++|+++++.+
T Consensus 528 d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 528 DMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 9999999999999999999999886 589999999999998765
No 6
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=3.4e-68 Score=597.31 Aligned_cols=427 Identities=38% Similarity=0.669 Sum_probs=345.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHccccc
Q 004131 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDI 162 (772)
Q Consensus 83 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~ 162 (772)
|+++|+++..++..++|+.+++.... +|+.|+.+++++++++++++++++|.++||||||||++++|.+.
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~ 70 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC----------NYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFII 70 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccc
Confidence 78999999999999999988776542 45667778888999999999999999999999999999999888
Q ss_pred cCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhccc-CChhhhhhHHHhhhhhhh
Q 004131 163 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVF-RSDRDRRDLVTCGCAAGV 241 (772)
Q Consensus 163 ~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f-~~~~~~r~li~~GaaAgv 241 (772)
++.+++|+++.|++++++++++|+|+|||||++|+||++|++++| |++.+ +++++||++++||+|||+
T Consensus 71 ~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~-----------~~~~~~~~~~~~r~li~~GaaAGl 139 (445)
T cd03684 71 RGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISR-----------LFPKYRRNEAKRREILSAAAAAGV 139 (445)
T ss_pred cccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHH-----------HHHHhccCHHHHHHHHHHHHhhhh
Confidence 899999999999999999999999999999999999999999987 44433 378899999999999999
Q ss_pred hhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCCCCCCChhhHHH
Q 004131 242 AAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLP 321 (772)
Q Consensus 242 aaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~ 321 (772)
||+||||++|++|++||+.++|+.+.+|++++++++|+++.+.+.. ++.++...|+++. ..++++.|+++
T Consensus 140 aAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~~---------~~~~~~~~f~~~~-~~~~~~~~l~~ 209 (445)
T cd03684 140 AVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLNP---------FGTGRLVLFEVEY-DRDWHYFELIP 209 (445)
T ss_pred HHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhcc---------cCCCCceEEeccC-CCCccHHHHHH
Confidence 9999999999999999999999999999999999999988876532 3344445566542 45788899999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 004131 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (772)
Q Consensus 322 ~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~~~~~ 401 (772)
++++|++||++|.+|++ .+.++.+++.+.+.+.++++++++++++++++.++.|+... .
T Consensus 210 ~i~lGi~~Gl~g~lf~~---~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~~~p~~~~------------------~ 268 (445)
T cd03684 210 FILLGIFGGLYGAFFIK---ANIKWARFRKKSLLKRYPVLEVLLVALITALISFPNPYTRL------------------D 268 (445)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHcc------------------c
Confidence 99999999999999994 44444444322221235678889999999999998887621 0
Q ss_pred CCCCccccc--cccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccCcccchhHHH
Q 004131 402 GMYGNYVNF--YCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIM 479 (772)
Q Consensus 402 g~~g~~~~~--~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~ 479 (772)
|. ....+. .|..+. .++.... + . ..+ .......+..+++++++|+++|++|+|+|+|||+|+|+++
T Consensus 269 g~-~~i~~l~~~~~~~~-~~~~~~~----~----~-~~~-~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~ 336 (445)
T cd03684 269 MT-ELLELLFNECEPGD-DNSLCCY----R----D-PPA-GDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMA 336 (445)
T ss_pred hh-hHHHHHHhcCCCcc-ccccccc----c----c-ccC-CccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHH
Confidence 00 000000 010000 0000000 0 0 000 0001123456777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh---hc-----------CCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHHH
Q 004131 480 IGSTYGRLVGMFVVNFY---KK-----------LNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLV 545 (772)
Q Consensus 480 iGa~~G~l~g~~~~~~~---~~-----------~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia 545 (772)
+||++|+++|.+++.+. |+ ...+|+.||++||+|++++++|+|+|+++|++|+||++++++|+|++
T Consensus 337 iGA~~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia 416 (445)
T cd03684 337 VGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIA 416 (445)
T ss_pred HHHHHhHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHH
Confidence 99999999999998653 22 24789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-CcchHHHHHHhhCCCCC
Q 004131 546 LLISKAVGDAF-SEGLYEEQAHLRGVPLL 573 (772)
Q Consensus 546 ~~va~~v~~~~-~~~iy~~~l~~kg~p~L 573 (772)
+++|+++++.+ .+++||.+++.|++|||
T Consensus 417 ~~iA~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 417 VMVSKWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 99999999999 58999999999999996
No 7
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=1.4e-66 Score=581.78 Aligned_cols=414 Identities=31% Similarity=0.569 Sum_probs=343.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHH
Q 004131 76 WFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKG 155 (772)
Q Consensus 76 w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~ 155 (772)
|++.+++|+++|+++.+++..++++++++..... ..+++.+..++.|+.+++++++++++++++++|+++||||||||+
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~ 80 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYS-LLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKT 80 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHH
Confidence 8889999999999999999999999988766532 223345566778888888889999999999999999999999999
Q ss_pred HHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHh
Q 004131 156 YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTC 235 (772)
Q Consensus 156 ~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~ 235 (772)
+++|.+.++.+++|+++.|++++++++++|+|+|||||++|+||++|+.++|.. +.+ . ..++++.+||++++|
T Consensus 81 ~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~----~~~--~-~~~~~~~~rr~Li~~ 153 (426)
T cd03683 81 ILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLT----TFF--S-GIYENESRRMEMLAA 153 (426)
T ss_pred HHcCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhc----ccc--c-ccccCHHHHHHHHHh
Confidence 999988899999999999999999999999999999999999999999998732 110 0 013477889999999
Q ss_pred hhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCce-EEEecC-CCCCC
Q 004131 236 GCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGF-IIWDIS-DGQED 313 (772)
Q Consensus 236 GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~-~~f~~~-~~~~~ 313 (772)
|+|||+||+||||++|++|++||+.++|+.+..|+++++|++++++.+.+.++... .... -.|... ....+
T Consensus 154 GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 226 (426)
T cd03683 154 ACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFSD-------QETITALFKTTFFVDFP 226 (426)
T ss_pred HhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHhhcCC-------CccccccccccccCCCC
Confidence 99999999999999999999999999999999999999999999988766543211 1100 001111 12346
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhc--ccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCCCC
Q 004131 314 YSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLH--KKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDL 391 (772)
Q Consensus 314 ~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~ 391 (772)
++..++++++++|++||++|++|+++++...++++++.. +..+..+++++++++++++++.+ |
T Consensus 227 ~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~--p------------- 291 (426)
T cd03683 227 FDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLTF--P------------- 291 (426)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHH--H-------------
Confidence 788999999999999999999999666555554443211 11233467777777777665321 1
Q ss_pred CCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccCc
Q 004131 392 DSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPA 471 (772)
Q Consensus 392 ~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~g 471 (772)
+..++++++.|+++|++|+|+|+||
T Consensus 292 -------------------------------------------------------~~~l~~~~~~K~~~t~~t~gsG~~G 316 (426)
T cd03683 292 -------------------------------------------------------FLTLFLFIVVKFVLTALAITLPVPA 316 (426)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 2345667889999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhh-------cCCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHH
Q 004131 472 GQFVPGIMIGSTYGRLVGMFVVNFYK-------KLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIML 544 (772)
Q Consensus 472 G~f~P~l~iGa~~G~l~g~~~~~~~~-------~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimi 544 (772)
|+|+|++++||++|+++|.+++.+.| ....+|+.||++||+|+++|++|+|.+ ++|++|+||++++++|+|+
T Consensus 317 Gif~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t-~vlv~E~Tg~~~~llpl~i 395 (426)
T cd03683 317 GIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTHTVSV-AVIIFELTGQISHLLPVLI 395 (426)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHhHHHH-HheeeeecCCcchHHHHHH
Confidence 99999999999999999999988776 345789999999999999999998665 5799999999999999999
Q ss_pred HHHHHHHHHhhcCcchHHHHHHhhCCCCCCC
Q 004131 545 VLLISKAVGDAFSEGLYEEQAHLRGVPLLES 575 (772)
Q Consensus 545 a~~va~~v~~~~~~~iy~~~l~~kg~p~L~~ 575 (772)
++++|+++++.+++++||.+++.|++|||++
T Consensus 396 a~~ia~~v~~~~~~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 396 AVLISNAVAQFLQPSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence 9999999999998899999999999999984
No 8
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=2e-65 Score=571.35 Aligned_cols=407 Identities=43% Similarity=0.716 Sum_probs=338.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHccccc
Q 004131 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDI 162 (772)
Q Consensus 83 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~ 162 (772)
|+++|+++.+++..++++++++...+.+. .+++...|+.|+..++++++++++++++++|+++||||||+|+++||.+.
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~ 79 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRI-PGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHL 79 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCcc
Confidence 67899999999999999999988775442 33355667778888889999999999999999999999999999999989
Q ss_pred cCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhhh
Q 004131 163 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVA 242 (772)
Q Consensus 163 ~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAgva 242 (772)
++++++|+++.|++++++++++|+|+|||||++|+||++|++++|.....++...+++++++++++||++++||+|||+|
T Consensus 80 ~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGla 159 (416)
T cd01036 80 PMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVA 159 (416)
T ss_pred cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchh
Confidence 99999999999999999999999999999999999999999999854333332334556667889999999999999999
Q ss_pred hhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCC-ceEEEecCCCCCCCChhhHHH
Q 004131 243 AAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSG-GFIIWDISDGQEDYSFEELLP 321 (772)
Q Consensus 243 aaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~l~~ 321 (772)
|+||||++|++|++||+.++|+.+.+|++++++++++++.+.+.++........+..+ ..+.++++ ...+++++|+++
T Consensus 160 AaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 238 (416)
T cd01036 160 SAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTVFE-LHVPLNLYEFIP 238 (416)
T ss_pred hccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccceeccccC-CCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999998876543221100000000 00122333 245688899999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 004131 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (772)
Q Consensus 322 ~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~~~~~ 401 (772)
++++|++||++|.+|+++++...+++++..+.+.++.|++++++++++++++.+
T Consensus 239 ~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------------------- 292 (416)
T cd01036 239 TVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY-------------------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH--------------------------
Confidence 999999999999999965555554444322222345678888888888776432
Q ss_pred CCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHH
Q 004131 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIG 481 (772)
Q Consensus 402 g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iG 481 (772)
+..++++++.|+++|++|+|+|+|||+|+|++++|
T Consensus 293 ---------------------------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iG 327 (416)
T cd01036 293 ---------------------------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIG 327 (416)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Confidence 12355678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc--------CCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 004131 482 STYGRLVGMFVVNFYKK--------LNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVG 553 (772)
Q Consensus 482 a~~G~l~g~~~~~~~~~--------~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia~~va~~v~ 553 (772)
|++|+++|.+++.++|. ..++|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|++++
T Consensus 328 A~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~ 407 (416)
T cd01036 328 AAIGRLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVA 407 (416)
T ss_pred HHHHHHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHH
Confidence 99999999999887753 2488999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcchHH
Q 004131 554 DAFSEGLYE 562 (772)
Q Consensus 554 ~~~~~~iy~ 562 (772)
+.+++++||
T Consensus 408 ~~~~~siY~ 416 (416)
T cd01036 408 DAFCESLYH 416 (416)
T ss_pred HhhCCCCCC
Confidence 999999996
No 9
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=1.5e-58 Score=515.75 Aligned_cols=401 Identities=29% Similarity=0.499 Sum_probs=334.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHcccc
Q 004131 82 IGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVD 161 (772)
Q Consensus 82 iGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~ 161 (772)
+|+++|+++.+|+..++++++++++...... ..+..|+.++.++.+++++++++++++.|+++|+|+||+++.++|..
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~ 78 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAA--NNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLL 78 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCC
Confidence 4889999999999999999999887532211 22233445566777788888899888899999999999999999854
Q ss_pred ccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhh
Q 004131 162 IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGV 241 (772)
Q Consensus 162 ~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAgv 241 (772)
+.+.+++++.|++++++++++|+|+|||||++|+|+++|++++| +++. ++.++|++++||+|||+
T Consensus 79 --~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~-----------~~~~--~~~~~~~l~~~g~aag~ 143 (402)
T cd01031 79 --PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK-----------WFKT--SPEERRQLIAAGAAAGL 143 (402)
T ss_pred --CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------HhcC--CHHHHHHHHHHHHHHhH
Confidence 34678999999999999999999999999999999999999987 4443 56789999999999999
Q ss_pred hhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCCCCCCChhhHHH
Q 004131 242 AAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLP 321 (772)
Q Consensus 242 aaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~ 321 (772)
+++||||++|++|++|++.++|+.+.+++.++++.+++++.+.+ +++++ .|.++ ....+++.|+++
T Consensus 144 aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~-----------~~~~~--~~~~~-~~~~~~~~~l~~ 209 (402)
T cd01031 144 AAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF-----------FGLGP--VLSIP-PLPALPLKSYWL 209 (402)
T ss_pred HHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eEecC-CCCCCCHHHHHH
Confidence 99999999999999999998888889999999999998887753 23333 35554 245688999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 004131 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (772)
Q Consensus 322 ~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~~~~~ 401 (772)
++++|+++|++|.+|+ +.+.+.++++.+. .+..+++.+.+.+++++++.++.|+. .
T Consensus 210 ~illGv~~G~~g~~f~---~~~~~~~~~~~~~-~~~~~~~~~~l~gl~~~~~~~~~p~~--------------------~ 265 (402)
T cd01031 210 LLLLGIIAGLLGYLFN---RSLLKSQDLYRKL-KKLPRELRVLLPGLLIGPLGLLLPEA--------------------L 265 (402)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHhc-ccCChhHHHHHHHHHHHHHHHHHHHH--------------------h
Confidence 9999999999999999 5555554444221 12234556677788888888877765 1
Q ss_pred CCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHH
Q 004131 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIG 481 (772)
Q Consensus 402 g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iG 481 (772)
| +| | +.++.+++ +++++..++.+++.|+++|++|+|+|+|||+|+|++++|
T Consensus 266 g-----------~G--~------------~~i~~~~~----~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iG 316 (402)
T cd01031 266 G-----------GG--H------------GLILSLAG----GNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALG 316 (402)
T ss_pred C-----------CH--H------------HHHHHHHc----CCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 2 12 2 23444443 346677888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHHHHHHHHHHHhhc-Ccch
Q 004131 482 STYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGL 560 (772)
Q Consensus 482 a~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia~~va~~v~~~~-~~~i 560 (772)
|++|+++|++++.++|....+|+.||++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++
T Consensus 317 a~~G~~~g~~~~~~~~~~~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~si 396 (402)
T cd01031 317 ALLGLLFGTILVQLGPIPISAPATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPI 396 (402)
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 999999999999888766789999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHH
Q 004131 561 YEEQAH 566 (772)
Q Consensus 561 y~~~l~ 566 (772)
||.+++
T Consensus 397 Y~~~l~ 402 (402)
T cd01031 397 YEALLE 402 (402)
T ss_pred hHHHhC
Confidence 999864
No 10
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=2.6e-58 Score=512.82 Aligned_cols=411 Identities=17% Similarity=0.258 Sum_probs=327.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc--cccCCCH
Q 004131 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTF-SIIQKSYFAGFLVYILINLILVFSSVYIITKFAP--AAAGSGI 150 (772)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p--~a~GsGi 150 (772)
++|++++++|+++|+.+.+|...+++++++.++... +..+.....++++...++++.+++++++.+++.| ..+++|+
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~~~~~~g~ 82 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFTQQRPHAP 82 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccccccCCCc
Confidence 456689999999999999999999998775443211 1111111112234456677778888888777765 4788999
Q ss_pred HHHHHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhh
Q 004131 151 PEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRR 230 (772)
Q Consensus 151 pev~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r 230 (772)
+++++.++. ++.+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| +++ +++|||
T Consensus 83 ~~vi~av~~---~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~-----------~~~---~~~~~r 145 (418)
T PRK01610 83 TDYMEALQT---DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQ-----------RFT---PRQEWK 145 (418)
T ss_pred HHHHHHHHc---CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-----------HhC---ChHHHH
Confidence 998887765 467889999999999999999999999999999999999999997 443 567899
Q ss_pred hHHHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCC
Q 004131 231 DLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDG 310 (772)
Q Consensus 231 ~li~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 310 (772)
++++||+|||+||+||||++|++|++|++.+.++.+.+.++++++.+++++.+.+ ++.. ...|+++ .
T Consensus 146 ~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~-----------~g~~-~~~~~i~-~ 212 (418)
T PRK01610 146 LWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLL-----------NGSD-ALLYNVQ-L 212 (418)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------cCCC-CCeeecC-C
Confidence 9999999999999999999999999999988787777777777777777666543 2221 1246665 3
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCCC
Q 004131 311 QEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESD 390 (772)
Q Consensus 311 ~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~ 390 (772)
...++..++++++++|+++|++|.+|+ +.+.+.++++.+.+ ..+++.+.+.+++++++.++.|++
T Consensus 213 ~~~~~~~~l~~~i~lGii~Gl~g~~f~---~~~~~~~~~~~~~~--~~~~~~~~lggli~g~l~~~~p~~---------- 277 (418)
T PRK01610 213 SVTVQARDYALIISTGLLAGLCGPLLL---TLMNASHRGFVSLK--LAPPWQLALGGLIVGLLSLFTPAV---------- 277 (418)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcccc--cchhHHHHHHHHHHHHHHHHhhHH----------
Confidence 456889999999999999999999999 66666655552222 234456778888888888877765
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccC
Q 004131 391 LDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVP 470 (772)
Q Consensus 391 ~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~ 470 (772)
.| .||+. ++..++ .+..+..++.+++.|+++|++|+|+|+|
T Consensus 278 ----------~G-------------~G~~~------------i~~~~~----~~~~~~~l~~l~l~K~~~t~lt~gsG~~ 318 (418)
T PRK01610 278 ----------WG-------------NGYSV------------VQSFLT----APPLLMLIAGIFLCKLLAVLASSGSGAP 318 (418)
T ss_pred ----------hC-------------CcHHH------------HHHHHc----CChhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 12 22433 233332 2334556667788999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHHHHHHHH
Q 004131 471 AGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISK 550 (772)
Q Consensus 471 gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia~~va~ 550 (772)
||+|.|++++||++|.++|++++.+++....++..||++||+|++++++|+|++++++++|+||++++++|+|+++++|+
T Consensus 319 GG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~ 398 (418)
T PRK01610 319 GGVFTPTLFVGLAIGMLYGRSLGLWLPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIAS 398 (418)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHH
Confidence 99999999999999999999998876654556889999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CcchHHHHHHhh
Q 004131 551 AVGDAF-SEGLYEEQAHLR 568 (772)
Q Consensus 551 ~v~~~~-~~~iy~~~l~~k 568 (772)
++++.+ ++++|+.++..|
T Consensus 399 ~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 399 VISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred HHHHHhCCCCchHHHHhcc
Confidence 999988 899999998654
No 11
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=2e-57 Score=511.44 Aligned_cols=411 Identities=27% Similarity=0.505 Sum_probs=329.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHH
Q 004131 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGY 156 (772)
Q Consensus 77 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~ 156 (772)
++++++|+++|+++.+|+..++++++++++...+ .....+..|+.++.++.+++.+++++++++.|.++|+|+||++++
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~ 80 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLAS-VADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGA 80 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHH
Confidence 4688999999999999999999999998766432 111123334444556667777888899999999999999999999
Q ss_pred HccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhh
Q 004131 157 LNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCG 236 (772)
Q Consensus 157 l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~G 236 (772)
+++.+.. ...++++.|++++++++++|+|+|||||++|+|+++|+++++ +++. +++.++|++++||
T Consensus 81 l~~~~~~--~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~-----------~~~~-~~~~~~~~li~~G 146 (438)
T PRK05277 81 LEGLRPV--RWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLD-----------IFRL-RSDEARHTLLAAG 146 (438)
T ss_pred HcCCCcc--chHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------Hccc-CCHHHHHHHHHHH
Confidence 9975422 125789999999999999999999999999999999999987 3332 2567899999999
Q ss_pred hhhhhhhhhcCCccceeeeeeecchhh--hhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCCCCCC
Q 004131 237 CAAGVAAAFRAPVGGVLFALEEVTSWW--RSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDY 314 (772)
Q Consensus 237 aaAgvaaaF~APigGvlFalE~~~~~~--~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 314 (772)
+|||++++||||++|++|++|++.+.+ +.+.+++.++++++++++.+.+. +.++ .|+++. ...+
T Consensus 147 ~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~-----------g~~~--~~~~~~-~~~~ 212 (438)
T PRK05277 147 AAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFN-----------GEQA--VIEVGK-FSAP 212 (438)
T ss_pred HHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc-----------CCCc--eEeccC-CCCC
Confidence 999999999999999999999887643 55667888888888888776542 3333 345542 2346
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhccc-CCccc-hhhhHHHHHHHHHHHhcccccccCCCCCCCCCC
Q 004131 315 SFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKK-GNRVK-IIEACVISVITSVISFGLPLLRKCSPCPESDLD 392 (772)
Q Consensus 315 ~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~ 392 (772)
++.++++++++|++||++|++|+ +.+.+.++++.+.+ .++++ ++.+.+++++++++.++.|..
T Consensus 213 ~~~~l~~~i~lGi~~G~~g~lf~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~------------ 277 (438)
T PRK05277 213 PLNTLWLFLLLGIIFGIFGVLFN---KLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAA------------ 277 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhh------------
Confidence 67899999999999999999999 55555555442211 22223 335566677777777776654
Q ss_pred CCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccCcc
Q 004131 393 SGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAG 472 (772)
Q Consensus 393 ~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG 472 (772)
.| .||+. ++..++ +++++..++.+++.|++++++|+|+|+|||
T Consensus 278 --------~g-------------~G~~~------------i~~~~~----~~~~~~~l~~~~~~K~i~t~ls~gsG~~GG 320 (438)
T PRK05277 278 --------VG-------------GGFNL------------IPIALA----GNFSIGMLLFIFVARFITTLLCFGSGAPGG 320 (438)
T ss_pred --------cC-------------ChHHH------------HHHHHc----CCchHHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 11 22333 344433 345666777888999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHHHHHHHHHH
Q 004131 473 QFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAV 552 (772)
Q Consensus 473 ~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia~~va~~v 552 (772)
+|.|++++||++|+++|.+++.++|....+|..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++
T Consensus 321 ~f~Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v 400 (438)
T PRK05277 321 IFAPMLALGTLLGLAFGMVAAALFPQYHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLL 400 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 99999999999999999999888876678999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc-CcchHHHHHHhh
Q 004131 553 GDAF-SEGLYEEQAHLR 568 (772)
Q Consensus 553 ~~~~-~~~iy~~~l~~k 568 (772)
++.+ ++++||.++++.
T Consensus 401 ~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 401 AQFLGGKPIYSALLERT 417 (438)
T ss_pred HHHhCCCChHHHHHHHH
Confidence 9999 789999999764
No 12
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-55 Score=489.54 Aligned_cols=411 Identities=28% Similarity=0.445 Sum_probs=324.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-HHhhhccccccCCCHHHHH
Q 004131 76 WFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSV-YIITKFAPAAAGSGIPEIK 154 (772)
Q Consensus 76 w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~p~a~GsGipev~ 154 (772)
+....++|+++|+.....+....+.......... ..+... +++.+.+...++++++ +++.++.|+++|+|+||++
T Consensus 23 i~~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i 98 (443)
T COG0038 23 IGIAAALGVIVGLFAVALDLALLLLGRLRGGLLS---AAQAPG-PWLLPLVPALGGLLVGALLVYKFAPEARGSGIPQAI 98 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---ccccch-hHHHHHHHHHHHHHHHHHHHHHhCccccCCChhHHH
Confidence 3367777777777777777777666655432211 111111 2223334445556666 7888899999999999999
Q ss_pred HHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHH
Q 004131 155 GYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVT 234 (772)
Q Consensus 155 ~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~ 234 (772)
+.+++. ++.+++|..++|++++++++++|+|+|||||++|+|+++|+.+++ ++|. ++.|||.+++
T Consensus 99 ~a~~~~--~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~-----------~l~~--~~~~~r~Ll~ 163 (443)
T COG0038 99 EALHGR--KGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGR-----------LLKL--SREDRRILLA 163 (443)
T ss_pred HHHhcC--CCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHH
Confidence 998874 567889999999999999999999999999999999999999997 4554 5789999999
Q ss_pred hhhhhhhhhhhcCCccceeeeeeecchh-hhhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCCCCC
Q 004131 235 CGCAAGVAAAFRAPVGGVLFALEEVTSW-WRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQED 313 (772)
Q Consensus 235 ~GaaAgvaaaF~APigGvlFalE~~~~~-~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 313 (772)
||+|||+||+|||||+|++|++|++... |+.+.++++++++.++..+...+. +.+ ..+.++. ...
T Consensus 164 ~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~~-----------~~~--~~~~~~~-~~~ 229 (443)
T COG0038 164 AGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLFG-----------GPH--FLLPIVT-TPH 229 (443)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHcC-----------CCC--ceeeccc-cCc
Confidence 9999999999999999999999999887 888888888887777777665431 212 2344443 466
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCCCCCC
Q 004131 314 YSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDS 393 (772)
Q Consensus 314 ~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~ 393 (772)
++.++++.++++|+++|++|.+|. +.+.+.++.+ ++.+..+.+.+.+.+++++++.++.|..
T Consensus 230 ~~~~~~~~~~~lGii~G~~g~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~g~l~g~~~l~~P~~------------- 291 (443)
T COG0038 230 MSLWDLLLYLVLGIIAGLFGVLLS---RLLALSRRFF--RRLPLPPLLRPALGGLLVGALGLLFPEV------------- 291 (443)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--hcCcchHHHHHHHHHHHHHHHHHhchhh-------------
Confidence 889999999999999999999999 4444443332 2223336778888888999999888876
Q ss_pred CCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccCccc
Q 004131 394 GIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQ 473 (772)
Q Consensus 394 ~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~ 473 (772)
.| .|+++++. .++ .++.+..++.+++.|+++|.+|+|+|.|||+
T Consensus 292 -------lg-----------~G~~~~~~--------------~~~----~~~~~~~l~~l~~~K~l~t~~s~gSG~~GGi 335 (443)
T COG0038 292 -------LG-----------NGYGLIQL--------------ALA----GEGGLLVLLLLFLLKLLATLLSYGSGAPGGI 335 (443)
T ss_pred -------hC-----------CCccHHHH--------------HHc----cCccHHHHHHHHHHHHHHHHHHHhcCCCcce
Confidence 12 23323221 221 2333333677889999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHHHHHHHHHHH
Q 004131 474 FVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVG 553 (772)
Q Consensus 474 f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia~~va~~v~ 553 (772)
|+|++++||++|.++|.+++..++.....|+.|+++||+|++++++|+|++++++++|+||+++.++|+|+++++|+.++
T Consensus 336 f~Psl~iGa~lG~~~g~~~~~~~~~~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~ 415 (443)
T COG0038 336 FAPSLFIGAALGLAFGALLGLLFPPSILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVS 415 (443)
T ss_pred ehHHHHHHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999887655677889999999999999999999999999999999999999999999999999
Q ss_pred hhc-CcchHHHHHHhhCCCCC
Q 004131 554 DAF-SEGLYEEQAHLRGVPLL 573 (772)
Q Consensus 554 ~~~-~~~iy~~~l~~kg~p~L 573 (772)
+.. +.++|++.+++++.|..
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~ 436 (443)
T COG0038 416 RLLGGRPIYTQLLARRGAPIL 436 (443)
T ss_pred HHhCCCcHHHHHHHhcCchhh
Confidence 988 88999999999888743
No 13
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=2.4e-55 Score=481.89 Aligned_cols=348 Identities=35% Similarity=0.605 Sum_probs=275.2
Q ss_pred HHHHHHHHhhhccccccCCCHHHHHHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccC
Q 004131 130 LVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGG 209 (772)
Q Consensus 130 ~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~ 209 (772)
++++++++++++.|+++|+||||+++.+++.+ +.+++|+.+.|++++++++++|+|+|||||++|+|+++|++++|
T Consensus 2 ~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~--~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~-- 77 (355)
T PF00654_consen 2 GGLLSGLLWKKFAPEAAGSGIPEVKAALRGKS--GRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGR-- 77 (355)
T ss_dssp HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS-----HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHH--
T ss_pred EEEEeeHHHHHHCCccCCCCHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHH--
Confidence 45778889999999999999999999999854 34899999999999999999999999999999999999999987
Q ss_pred ccccchhhhhhcccCChhh-hhhHHHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 004131 210 STKYHLRYRWLQVFRSDRD-RRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGW 288 (772)
Q Consensus 210 ~~~~~l~~~~~~~f~~~~~-~r~li~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~ 288 (772)
++|. ++.+ +|.+++||+|||+||+||||++|++|++|++.++++.+.++++++++++++++.+.+..
T Consensus 78 ---------~~~~--~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~- 145 (355)
T PF00654_consen 78 ---------RFRL--SRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLLFG- 145 (355)
T ss_dssp ---------HTT----CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHHHT-
T ss_pred ---------hhcc--cchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHHcC-
Confidence 4443 3344 77799999999999999999999999999999999999999999999999999987643
Q ss_pred ccCCcccccCCCceEEEe-cCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHH
Q 004131 289 CKSGKCGHFGSGGFIIWD-ISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVIS 367 (772)
Q Consensus 289 ~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (772)
..+ .|+ ++. ...+++.++++++++|++||++|.+|+++++..+++.+++. +.+.++++++.+.+
T Consensus 146 ----------~~~--~f~~~~~-~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~--~~~~~~~l~~~i~g 210 (355)
T PF00654_consen 146 ----------NHP--IFGSVPQ-LFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK--RLKIPPILRPVIGG 210 (355)
T ss_dssp ----------SS---SS---TT------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred ----------cCc--ccccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHH
Confidence 222 244 442 34789999999999999999999999955555554444321 22333566899999
Q ss_pred HHHHHHHhcccc--cccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcc
Q 004131 368 VITSVISFGLPL--LRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEY 445 (772)
Q Consensus 368 ~~~~~~~~~~p~--~~~c~~~~~~~~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~ 445 (772)
++++++.++.|+ + .| .| |+. ++.+++++ ...+
T Consensus 211 l~~g~l~~~~p~~~~--------------------~g-----------~G--~~~------------i~~ll~~~-~~~~ 244 (355)
T PF00654_consen 211 LVIGLLAFFFPEGSV--------------------LG-----------SG--YEL------------IQSLLSGS-PPWF 244 (355)
T ss_dssp HHHHHHHHSSGG-SG--------------------SS-----------SS--TTH------------HHHHCTT-----S
T ss_pred HHHHHHHHHHhhhcc--------------------cC-----------Cc--HHH------------HHHHHcCC-cchh
Confidence 999999999886 4 11 12 333 45555421 2257
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHHHHHHHHHHHHHHhhhcC-CCchHHHHHHHhhhhhhccccchhH
Q 004131 446 SAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKL-NIEEGTYALLGAASFLGGSMRMTVS 524 (772)
Q Consensus 446 ~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~-~~~~~~~aliGaaa~l~g~~r~pis 524 (772)
++..++.++++|++++++|+++|+|||+|+|++++||++|++++.+++..+|+. ..+|+.|+++||+|++++++|+|++
T Consensus 245 ~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt 324 (355)
T PF00654_consen 245 SLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISSVDPGVYALVGMAAFLAAVTRAPLT 324 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHHHHHHHHTTHHHHHHCS-HHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCCCchHHHHHHHHHHHHHHHHHhHHH
Confidence 788999999999999999999999999999999999999999999999987642 3489999999999999999999999
Q ss_pred HhHHHHHhcCCcchHHHHHHHHHHHHHHHh
Q 004131 525 LCVIMVEITNNLKFLPLIMLVLLISKAVGD 554 (772)
Q Consensus 525 ~~vi~~E~Tg~~~~l~pimia~~va~~v~~ 554 (772)
+++|++|+|||+++++|+|+++++|+.+++
T Consensus 325 ~~vl~~Eltg~~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 325 AIVLVLELTGDFQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp HHHHHHHHH--GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999986
No 14
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.2e-54 Score=480.23 Aligned_cols=384 Identities=23% Similarity=0.305 Sum_probs=305.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHcccc
Q 004131 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKS-YFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVD 161 (772)
Q Consensus 83 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~ 161 (772)
|+++|+.+.+|+..+++++++.+........+. ...++++...++++.+++++++.++. + ..|+|+||+++++++.
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~~~~~-~-~~g~gi~~v~~~~~~~- 77 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLGWYLL-R-RKGKKLVSIKQAVRGK- 77 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHHHHHH-h-ccCCCcccHHHHhcCC-
Confidence 688999999999999999998876432111111 11122333345556666666654433 3 4699999999999873
Q ss_pred ccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhh
Q 004131 162 IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGV 241 (772)
Q Consensus 162 ~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAgv 241 (772)
+.+++++.+.|.+++++++++|+|+|||||++|+|+++|++++| ++|. ++++||++++||+|||+
T Consensus 78 --~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~-----------~~~~--~~~~~r~li~~GaaAGl 142 (388)
T cd01033 78 --KRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSD-----------WLGL--TVADRRLLVACAAGAGL 142 (388)
T ss_pred --CCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999987 4443 67889999999999999
Q ss_pred hhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCCCCCCChhhHHH
Q 004131 242 AAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLP 321 (772)
Q Consensus 242 aaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~ 321 (772)
||+||||++|++|++|++.+.|+.+..+++++++.+++++.+.+ +++.+ .|.++. .++++.++++
T Consensus 143 aa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~f~~~~--~~~~~~~l~~ 207 (388)
T cd01033 143 AAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLL-----------KGDHP--IYDIPP--MQLSTPLLIW 207 (388)
T ss_pred HHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----------CCCCc--eeecCC--CCCCHHHHHH
Confidence 99999999999999999999899888899989888888887754 23333 455552 3455888999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCC
Q 004131 322 MAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPP 401 (772)
Q Consensus 322 ~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~~~~~ 401 (772)
++++|+++|++|.+|+ +.+.+.++++.+. .+.++.+.+.+++++++.++.|+. .
T Consensus 208 ~illGi~~Gl~~~lf~---~~~~~~~~~~~~~---~~~~~~~~l~gl~~g~~~~~~p~~--------------------~ 261 (388)
T cd01033 208 ALLAGPVLGVVAAGFR---RLSQAARAKRPKG---KRILWQMPLAFLVIGLLSIFFPQI--------------------L 261 (388)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHHHHHH--------------------h
Confidence 9999999999999999 5555555554211 122344566677788887777765 1
Q ss_pred CCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHH
Q 004131 402 GMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIG 481 (772)
Q Consensus 402 g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iG 481 (772)
| .| | +.++.+++ ++++...++.+++.|+++|++|+|+|.|||+|.|++++|
T Consensus 262 G-----------~G--~------------~~i~~~~~----~~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iG 312 (388)
T cd01033 262 G-----------NG--R------------ALAQLAFS----TTLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALG 312 (388)
T ss_pred C-----------Cc--H------------HHHHHHHc----CCchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHH
Confidence 2 12 3 22444443 234556677788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcC-CcchHHHHHHHHHHHHHHHhhc
Q 004131 482 STYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITN-NLKFLPLIMLVLLISKAVGDAF 556 (772)
Q Consensus 482 a~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg-~~~~l~pimia~~va~~v~~~~ 556 (772)
|++|+++|++++.+.| +.++..|+++||+|++++++|+|+|++++++|+|| +++.++|+|+++++|+.+++.+
T Consensus 313 a~~G~~~g~~~~~~~p--~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 313 ALLGALLGIVWNALLP--PLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHHHHHhCC--cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999987654 56889999999999999999999999999999999 9999999999999999999865
No 15
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.7e-54 Score=480.70 Aligned_cols=386 Identities=26% Similarity=0.408 Sum_probs=298.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHccc---ccc
Q 004131 87 GLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGV---DIH 163 (772)
Q Consensus 87 Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~---~~~ 163 (772)
|+++.+|+..++++++++++... .+ +|+.++..++.. .++.+++.++.|+++||||||+++.+++. +.+
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~p~~~-~~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~~~~~ 72 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTA----TH---PWLPLLLTPAGF-ALIAWLTRRFFPGAAGSGIPQVIAALELPSAAARR 72 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHH----hc---hHHHHHHHHHHH-HHHHHHHHhhCCCCCCCCHHHHHHHHccccccccc
Confidence 56788899999999888775421 11 233344445444 45556667799999999999999999853 356
Q ss_pred CchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhhhh
Q 004131 164 GILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAA 243 (772)
Q Consensus 164 ~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAgvaa 243 (772)
+++++|+++.|++++++++++|+|+|||||++|+|+++|+.++| +++. +++.+||++++||+|||+||
T Consensus 73 ~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~-----------~~~~-~~~~~~r~li~~GaaAGlaa 140 (390)
T cd01034 73 RLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGR-----------RLPK-WGGLSERGLILAGGAAGLAA 140 (390)
T ss_pred ccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHH-----------Hccc-CchHHHHHHHHHHHHHhHHH
Confidence 68999999999999999999999999999999999999999997 3332 13688999999999999999
Q ss_pred hhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCCCCCCChhhHHHHH
Q 004131 244 AFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMA 323 (772)
Q Consensus 244 aF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~ 323 (772)
+||||++|++|++|++.++|+.+..++.+.++.+++++.+.+ +++.+ .|+++. ...+++.++++++
T Consensus 141 ~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~g~~~--~f~~~~-~~~~~~~~~~~~i 206 (390)
T cd01034 141 AFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLAV-----------LGNYP--YFGVAA-VALPLGEAWLLVL 206 (390)
T ss_pred HhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-----------cCCCC--ccCCCC-CCcCCHHHHHHHH
Confidence 999999999999999999998888888888888888777653 23333 344442 2346788899999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCC
Q 004131 324 VIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGM 403 (772)
Q Consensus 324 ~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~~~~~g~ 403 (772)
++|++||++|.+|++......+..+.+.+++.+.++++.+.+.+++++++.++.|.. .
T Consensus 207 llGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~--------------------~-- 264 (390)
T cd01034 207 VCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGL--------------------T-- 264 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCc--------------------c--
Confidence 999999999999994444433332222111222234455666677777766654321 0
Q ss_pred CCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHHH
Q 004131 404 YGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGST 483 (772)
Q Consensus 404 ~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~ 483 (772)
.|.||+. ++..++++ ... ...+++.|+++|++|+|+|+|||.|.|++++||+
T Consensus 265 ----------~G~G~~~------------i~~~~~~~--~~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~ 316 (390)
T cd01034 265 ----------FGTGYLQ------------ARAALEGG--GGL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAG 316 (390)
T ss_pred ----------ccCcHHH------------HHHHHhCC--Ccc----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHH
Confidence 1222433 33333321 111 2245679999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHHHHHHHHHHHhhc-CcchHH
Q 004131 484 YGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGLYE 562 (772)
Q Consensus 484 ~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia~~va~~v~~~~-~~~iy~ 562 (772)
+|++++.+++ ..+|..|+++||+|++++++|+|++++++++|+|+++++++|+|+++++|+++++.+ .+++||
T Consensus 317 ~G~~~~~~~~------~~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 317 LGSLLAALLG------SVSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred HHHHHHHHhc------CCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999863 258999999999999999999999999999999999999999999999999999998 788886
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=3.5e-52 Score=462.51 Aligned_cols=383 Identities=28% Similarity=0.464 Sum_probs=311.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHccccc
Q 004131 83 GIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDI 162 (772)
Q Consensus 83 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~ 162 (772)
|+++|+++.+|+..+++.++++++...+.. .....+++++...+++.+++++++.++..| +.|+|+||++..+++.
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~-~~g~G~~~v~~~~~~~-- 76 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGEL-AAGSLSPLYILLVPVIGGLLVGLLVRLLGP-ARGHGIPEVIEAIALG-- 76 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccccHHHHHHHHHHHHHHHHHHHHHhCc-ccCCChHHHHHHHHhC--
Confidence 688999999999999999998876532211 001223444555666777777777776666 8999999999988753
Q ss_pred cCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhhhhhhh
Q 004131 163 HGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVA 242 (772)
Q Consensus 163 ~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAgva 242 (772)
++.+++++++.|++++++++++|+|+|+|||++|+|+++|+++++ +++. ++.++|.+++||+|||++
T Consensus 77 ~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~-----------~~~~--~~~~~~~l~~~G~aagla 143 (383)
T cd00400 77 GGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGR-----------RLRL--SRNDRRILVACGAAAGIA 143 (383)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999999999999999999999987 3333 567899999999999999
Q ss_pred hhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCCCCCCChhhHHHH
Q 004131 243 AAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPM 322 (772)
Q Consensus 243 aaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~ 322 (772)
++||||++|++|++|++.++++.+.++++++++.++.++.+.+. +..+ .|+++. ..++++.+++++
T Consensus 144 a~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~-----------~~~~--~~~~~~-~~~~~~~~~~~~ 209 (383)
T cd00400 144 AAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLF-----------GAEP--AFGVPL-YDPLSLLELPLY 209 (383)
T ss_pred HhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-----------CCCC--eeeCCC-CCcCCHHHHHHH
Confidence 99999999999999999999888888999998888888877543 2222 355552 467899999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCC
Q 004131 323 AVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPG 402 (772)
Q Consensus 323 ~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~~~~~g 402 (772)
+++|++||++|.+|+ +.+.+.++++.+. +.++.+++.+.+++++++.++.|+.. |
T Consensus 210 il~Gv~~g~~g~~f~---~~~~~~~~~~~~~--~~~~~~~~~i~gll~~~~~~~~p~~~--------------------g 264 (383)
T cd00400 210 LLLGLLAGLVGVLFV---RLLYKIERLFRRL--PIPPWLRPALGGLLLGLLGLFLPQVL--------------------G 264 (383)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHHHHH--------------------c
Confidence 999999999999999 5555555544221 23456777888888888888888761 1
Q ss_pred CCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHH
Q 004131 403 MYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGS 482 (772)
Q Consensus 403 ~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa 482 (772)
.| |+. ++..+ +++++...++.+++.|++++++|+|+|+|||.|+|++++||
T Consensus 265 -----------~G--~~~------------~~~~~----~~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa 315 (383)
T cd00400 265 -----------SG--YGA------------ILLAL----AGELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGA 315 (383)
T ss_pred -----------Cc--HHH------------HHHHH----cCChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Confidence 12 322 22222 23456667788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHHHHHHHH
Q 004131 483 TYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISK 550 (772)
Q Consensus 483 ~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia~~va~ 550 (772)
++|+++|++++.++|....+|..|+++||+|++++++|+|++++++++|+||+++.++|+|+++++||
T Consensus 316 ~~G~~~~~~~~~~~~~~~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 316 ALGAAFGLLLPALFPGLVASPGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 99999999999877666789999999999999999999999999999999999999999999998874
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=5.3e-49 Score=434.63 Aligned_cols=376 Identities=20% Similarity=0.297 Sum_probs=286.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHHc
Q 004131 79 ALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYLN 158 (772)
Q Consensus 79 ~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~ 158 (772)
++++|+++|+++.+|+..+++++++++.. +|+. ..++ +.+++++++.+++.|. .|+|++|+++.++
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~~-----------~~~~-~~~p-~~g~~i~~l~~~~~~~-~~~g~~~v~~~~~ 67 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREAH-----------PWLL-PFLP-LAGLLIGYLYQKFGKN-SEKGNNLIIEEIH 67 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHH-HHHH-HHHHHHHHHHHHhCcc-cCCChHHHHHHHH
Confidence 67899999999999999999998876531 1221 2223 3445566777777655 5789999988877
Q ss_pred cccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhhh
Q 004131 159 GVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCA 238 (772)
Q Consensus 159 g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~Gaa 238 (772)
+. .+.+++|..+.|++++.+++++|+|+|||||++|+|+++|+++++ ++|. +++++|++++||+|
T Consensus 68 ~~--~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~g~a 132 (378)
T cd03682 68 GP--EEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGR-----------VFKL--PEEDRRILLIAGIA 132 (378)
T ss_pred cc--CCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHH
Confidence 52 356778999999999999999999999999999999999999997 3333 45678999999999
Q ss_pred hhhhhhhcCCccceeeeeeecc-hhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCCCCCCChh
Q 004131 239 AGVAAAFRAPVGGVLFALEEVT-SWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFE 317 (772)
Q Consensus 239 AgvaaaF~APigGvlFalE~~~-~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 317 (772)
||++++||||++|++|++|++. +.++.+.++++++++.+++.+.+.+. .++ ..|.++ ...+++++
T Consensus 133 Aglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~~------------~~~-~~~~~~-~~~~~~~~ 198 (378)
T cd03682 133 AGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHALG------------LEH-THYHIV-FIPTLDPL 198 (378)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhC------------CCC-CccccC-CCCCCCHH
Confidence 9999999999999999999985 55556666777777777666654321 111 124443 23567899
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCC
Q 004131 318 ELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESDLDSGIEC 397 (772)
Q Consensus 318 ~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~ 397 (772)
++++++++|++||++|.+|++ .+.+.++++.+. +..+++.+.+.+++++++.++.+.-
T Consensus 199 ~l~~~i~~Gi~~gl~g~~f~~---~~~~~~~~~~~~--~~~~~~~~~iggl~~g~~~~~~~~~----------------- 256 (378)
T cd03682 199 LFVKVILAGIIFGLAGRLFAE---LLHFLKKLLKKR--IKNPYLRPFVGGLLIILLVYLLGSR----------------- 256 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHhcCC-----------------
Confidence 999999999999999999994 444444443211 1224456677777777766654321
Q ss_pred CCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccCcccchhH
Q 004131 398 PRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPG 477 (772)
Q Consensus 398 ~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~ 477 (772)
+ . .|.+|+.+-. .+++ ++.+. ..++.|+++|++|+|+|+|||+|+|+
T Consensus 257 -~---~----------~G~g~~~i~~-----------~~~~----~~~~~----~~~l~K~~~t~~s~g~G~~GG~f~P~ 303 (378)
T cd03682 257 -R---Y----------LGLGTPLIED-----------SFFG----GTVYP----YDWLLKLIFTVITLGAGFKGGEVTPL 303 (378)
T ss_pred -c---c----------ccCCHHHHHH-----------HHhc----CCchH----HHHHHHHHHHHHHHhcCCCCceechH
Confidence 0 0 1233433211 1222 12221 23579999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHHHHHHHHHHHhhcC
Q 004131 478 IMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFS 557 (772)
Q Consensus 478 l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia~~va~~v~~~~~ 557 (772)
+++||++|+++++++ +.++..|+++||+|++++++|+|++++++++|+|| .+.++|+|+++++|+.+++ +
T Consensus 304 l~iGa~~G~~~~~~~-------~~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~ 373 (378)
T cd03682 304 FFIGATLGNALAPIL-------GLPVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--H 373 (378)
T ss_pred HHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--C
Confidence 999999999999986 45788999999999999999999999999999999 5788899999999999997 7
Q ss_pred cchHH
Q 004131 558 EGLYE 562 (772)
Q Consensus 558 ~~iy~ 562 (772)
+++|+
T Consensus 374 ~~iy~ 378 (378)
T cd03682 374 TGIYG 378 (378)
T ss_pred CCCCC
Confidence 78884
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=8.6e-46 Score=410.09 Aligned_cols=383 Identities=16% Similarity=0.217 Sum_probs=277.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHH
Q 004131 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (772)
Q Consensus 73 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (772)
++.+++++++|+++|+++.+|...+++++++.|+...+........+| +.+.++.+.+++++++.++ .|...|+ .|+
T Consensus 10 ~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~gGllvgll~~~-~~~~~G~-~~~ 86 (414)
T PRK03655 10 LLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPL-WIIGMLTLTGIAVGLVIRF-SPGHAGP-DPA 86 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccch-HHHHHHHHHHHHHHHHHHH-cCCCCCC-hHH
Confidence 345679999999999999999999999999888653211111111112 2234556777888888755 4765555 466
Q ss_pred HHHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhH
Q 004131 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (772)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~l 232 (772)
++....+ .++.+.+..|++++++++++|+|+|||||++|+||+++++++| +++ +..++|++
T Consensus 87 ~~~~~~~-----~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r-----------~~~---~~~~~~~l 147 (414)
T PRK03655 87 TEPLIGA-----PVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGA-----------RLL---PRVNRMDW 147 (414)
T ss_pred HHHHhcC-----CCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH-----------Hhc---cCCChhHH
Confidence 6666432 3556888999999999999999999999999999999999997 221 23457788
Q ss_pred HHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCCCC
Q 004131 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDGQE 312 (772)
Q Consensus 233 i~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 312 (772)
+.||+|||+||+||||++|++|++||+.+.+.... |...+++.+++.+....... .+ ++.+.++++. ..
T Consensus 148 ~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~-~~~~~~~v~aa~~a~~v~~~-------~~--~~~~~~~~~~-~~ 216 (414)
T PRK03655 148 TILASAGTIGALFGTPVAAALIFSQTLNGSNEVPL-WDRLFAPLMAAAAGALTTGL-------FF--HPHFSLPIAH-YG 216 (414)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHH-------hC--CCCcceecCC-CC
Confidence 99999999999999999999999999987665422 33334333333333222221 11 1222344442 34
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHHHHHHHHHhcc-cccccCCCCCCCCC
Q 004131 313 DYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGL-PLLRKCSPCPESDL 391 (772)
Q Consensus 313 ~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~c~~~~~~~~ 391 (772)
..+..++++++++|++||++|.+|+ +...+.++++.+.+.+ .+...+.+++++++.++. |..
T Consensus 217 ~~~~~~~~~~l~lgi~~gl~G~lf~---~~~~~~~~~~~~~~~p---~~~~~lgGl~vg~l~l~~~~~~----------- 279 (414)
T PRK03655 217 QMEMTDILSGAIVAAIAIAAGMVAV---WCLPRLHALMHRLKNP---VLVLGIGGFILGILGVIGGPLT----------- 279 (414)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcccc---hHHHHHHHHHHHHHHHHhCCcc-----------
Confidence 5677899999999999999999999 6666666555322222 234556667777766543 221
Q ss_pred CCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccCc
Q 004131 392 DSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVPA 471 (772)
Q Consensus 392 ~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~g 471 (772)
.|.||+. ++.+... +++++..++++++.|+++|++|+|+|+||
T Consensus 280 ----------------------~g~Gy~~------------i~~~~~~---~~~~~~~ll~l~l~K~lat~ls~~sG~~G 322 (414)
T PRK03655 280 ----------------------LFKGLDE------------MQQMAAN---QAFSASDYFLLAVVKLAALVVAAASGFRG 322 (414)
T ss_pred ----------------------ccCCHHH------------HHHHHhc---CCccHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 1223543 3333321 34667778888999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhcccc----chhHHhHHHHHhcCCcchHHHHHHHHH
Q 004131 472 GQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMR----MTVSLCVIMVEITNNLKFLPLIMLVLL 547 (772)
Q Consensus 472 G~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r----~pis~~vi~~E~Tg~~~~l~pimia~~ 547 (772)
|+|+|++++||++|..++.+++ ..++...+++||+|++++++| +|+|+.||++|+| +.|+|++++
T Consensus 323 GiF~PsL~iGA~~G~~~~~l~p------~~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~ 391 (414)
T PRK03655 323 GRIFPAVFVGVALGLMLHAHVP------AVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVM 391 (414)
T ss_pred ceehHHHHHHHHHHHHHHHhcc------CCChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHH
Confidence 9999999999999999998753 467888999999999999999 6999999999999 777788777
Q ss_pred HHHHHH
Q 004131 548 ISKAVG 553 (772)
Q Consensus 548 va~~v~ 553 (772)
++-|+-
T Consensus 392 ~~~~~~ 397 (414)
T PRK03655 392 LPAWLL 397 (414)
T ss_pred HHHHHH
Confidence 776654
No 19
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.72 E-value=1.2e-16 Score=160.75 Aligned_cols=133 Identities=17% Similarity=0.320 Sum_probs=110.9
Q ss_pred hhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCC
Q 004131 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (772)
Q Consensus 581 l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~ 660 (772)
+..++..|||++| ++++++++++.++.+.|.+++.+.+||+|++ .+++|+|+++|+.+..... +
T Consensus 242 ~~~LtcadIMSrd-Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~----~rl~GiVt~~dl~~~a~~~------p----- 305 (382)
T COG3448 242 MGELTCADIMSRD-VVTVSTDTSIDHARKLLQEHRIKALPVLDEH----RRLVGIVTQRDLLKHARPS------P----- 305 (382)
T ss_pred hccccHHHhcCcc-ceecCCcCChHHHHHHHHHcCcccccccccc----cceeeeeeHHHHhhccCcc------h-----
Confidence 4578999999999 9999999999999999999999999999997 8999999999997632111 0
Q ss_pred CCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 004131 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (772)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g 740 (772)
.++++. .++++ ++.+|+++..++.+|++..+..-+|.+.|++++||+|++|
T Consensus 306 -------~qrlr~------~~~~~----------------vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g 356 (382)
T COG3448 306 -------FQRLRF------LRPPT----------------VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAG 356 (382)
T ss_pred -------HHHhhc------cCCCc----------------ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCC
Confidence 011110 01112 4445999999999999999999999999999999999999
Q ss_pred eEEEEEeHhhhhhHhcCC
Q 004131 741 RVIGLITRKDLLIEDGED 758 (772)
Q Consensus 741 ~lvGIITr~DLl~~~~~~ 758 (772)
+++||||..|++.++.+.
T Consensus 357 ~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 357 KLVGIVSQTDLIAALYRN 374 (382)
T ss_pred cEEEEeeHHHHHHHHHHH
Confidence 999999999999987654
No 20
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.67 E-value=1e-15 Score=170.54 Aligned_cols=184 Identities=20% Similarity=0.190 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHH
Q 004131 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (772)
Q Consensus 73 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (772)
+..|...+++|+++|+++.+|...+.+.++++.+..... ....+++ ...+.+++.+.+..+..|...|+|.++
T Consensus 199 ~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~gl~~~~~~~~~~~~~~G~G~~~ 271 (390)
T cd01034 199 GEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRRF---RRRRPVL----FAALCGLALALIGLVSGGLTFGTGYLQ 271 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cchhhHH----HHHHHHHHHHHHHHhCCCccccCcHHH
Confidence 344568899999999999999999888876554321100 0111111 111223333333334445788999999
Q ss_pred HHHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhH
Q 004131 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (772)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~l 232 (772)
++..+++.. ...+..++.|++.+++++++|.++|+|+|++++||++|+.+++ +++ ..+.+.+
T Consensus 272 i~~~~~~~~---~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~-----------~~~----~~~~~~~ 333 (390)
T cd01034 272 ARAALEGGG---GLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAA-----------LLG----SVSQGAL 333 (390)
T ss_pred HHHHHhCCC---cccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHH-----------Hhc----CCCchHH
Confidence 999887632 3456778999999999999999999999999999999999987 222 2467899
Q ss_pred HHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 004131 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (772)
Q Consensus 233 i~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (772)
+.+||||++|+++|+|+++++|++|++.+ .+.+.+.++++.+|..+.+.
T Consensus 334 a~~G~aA~laa~~~aPlt~~vl~~Elt~~---~~~l~p~lia~~~A~~v~~~ 382 (390)
T cd01034 334 VLLGMAAFLAGVTQAPLTAFVIVMEMTGD---QQMLLPLLAAALLASGVSRL 382 (390)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999974 34556666666666655543
No 21
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.66 E-value=4.6e-16 Score=172.78 Aligned_cols=184 Identities=20% Similarity=0.174 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHH
Q 004131 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (772)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (772)
..+.+.+++|+++|+++.+|+..+.+.++++.. .. ++++.. .+.+++.+. +.++.|+..|+|.+.+
T Consensus 203 ~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~~--------~~--~~~~~~---~l~gl~~g~-~~~~~p~~~G~G~~~i 268 (388)
T cd01033 203 PLLIWALLAGPVLGVVAAGFRRLSQAARAKRPK--------GK--RILWQM---PLAFLVIGL-LSIFFPQILGNGRALA 268 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cc--chHHHH---HHHHHHHHH-HHHHHHHHhCCcHHHH
Confidence 345578899999999999999998887754311 11 111111 123334443 3456799999999989
Q ss_pred HHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHH
Q 004131 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLV 233 (772)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li 233 (772)
+..+++..... ..+..++.|++.+.+++++|.++|.|+|++.+|+++|+.+++. ++.+.++.+.+.++
T Consensus 269 ~~~~~~~~~~~-~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~-----------~~~~~p~~~~~~~a 336 (388)
T cd01033 269 QLAFSTTLTLS-LLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIV-----------WNALLPPLSIAAFA 336 (388)
T ss_pred HHHHcCCchHH-HHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHH-----------HHHhCCcccHHHHH
Confidence 88887632222 2366789999999999999999999999999999999999972 22211344567899
Q ss_pred HhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHh
Q 004131 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSA 285 (772)
Q Consensus 234 ~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~ 285 (772)
.|||||++|+++|||+++++|++|++.. +.+.+.+.++++++|+.+.+.+
T Consensus 337 ~~GmaA~laa~~~aPlt~ivl~~Eltg~--~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 337 LIGAAAFLAATQKAPLTALILVLEFTRQ--NPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999762 3456777788888887777643
No 22
>PRK05277 chloride channel protein; Provisional
Probab=99.61 E-value=3e-15 Score=169.26 Aligned_cols=188 Identities=20% Similarity=0.244 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHH
Q 004131 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (772)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (772)
..+...+++|+++|+++.+|+..+.++++++.+. .......++ ....+.+++.+.+ .++.|+..|+|.+.+
T Consensus 215 ~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~i~gl~~g~l-~~~~p~~~g~G~~~i 285 (438)
T PRK05277 215 NTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRL-----HGGNKKRWV---LMGGAVGGLCGLL-GLLAPAAVGGGFNLI 285 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccccHHHH---HHHHHHHHHHHHH-HHHhhhhcCChHHHH
Confidence 3455788999999999999999988887654321 111111111 1222334444444 456799999999999
Q ss_pred HHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHH
Q 004131 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLV 233 (772)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li 233 (772)
+..+++. .+-...+..++.|++.+.+++++|.++|.|+|++++||++|..+++.... +++. .+.+...++
T Consensus 286 ~~~~~~~-~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~-------~~p~--~~~~~~~~a 355 (438)
T PRK05277 286 PIALAGN-FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAA-------LFPQ--YHIEPGTFA 355 (438)
T ss_pred HHHHcCC-chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-------HcCc--ccccHHHHH
Confidence 9988862 22222344679999999999999999999999999999999998863211 1211 234567899
Q ss_pred HhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHH
Q 004131 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVR 283 (772)
Q Consensus 234 ~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~ 283 (772)
.+||||++|+++|+|+++++|++|++.+ ...+.+.++++.+|..+.+
T Consensus 356 ~~G~aA~la~~~~aPlt~~v~~~Eltg~---~~~l~p~lia~~~A~~v~~ 402 (438)
T PRK05277 356 IAGMGALFAATVRAPLTGIVLVLEMTDN---YQLILPLIITCLGATLLAQ 402 (438)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 3445566666666665554
No 23
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.60 E-value=4.9e-15 Score=147.14 Aligned_cols=123 Identities=14% Similarity=0.300 Sum_probs=110.5
Q ss_pred hhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCC
Q 004131 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (772)
Q Consensus 581 l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~ 660 (772)
..+.+++++|+++ +.++++++|++++.+.+.+++.++.||+|+ ++++|+++.+|+.+++.+..
T Consensus 169 iPk~~V~~~~s~~-~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-----dk~vGiit~~dI~~aia~g~----------- 231 (294)
T COG2524 169 IPKEKVKNLMSKK-LITVRPDDTLREAAKLFYEKGIRGAPVVDD-----DKIVGIITLSDIAKAIANGN----------- 231 (294)
T ss_pred cCcchhhhhccCC-ceEecCCccHHHHHHHHHHcCccCCceecC-----CceEEEEEHHHHHHHHHcCC-----------
Confidence 4567899999999 999999999999999999999999999998 58999999999998875542
Q ss_pred CCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 004131 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (772)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g 740 (772)
....++++|.++++++++|+.+.+|.++|.+++++++.|+|.+|
T Consensus 232 ------------------------------------~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~g 275 (294)
T COG2524 232 ------------------------------------LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNG 275 (294)
T ss_pred ------------------------------------ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCC
Confidence 01235566999999999999999999999999999999999889
Q ss_pred eEEEEEeHhhhhhHhc
Q 004131 741 RVIGLITRKDLLIEDG 756 (772)
Q Consensus 741 ~lvGIITr~DLl~~~~ 756 (772)
+.+|||||+|+++.+.
T Consensus 276 kpvGiITrTDIL~~ia 291 (294)
T COG2524 276 KPVGIITRTDILTRIA 291 (294)
T ss_pred cEEEEEehHHHHHHhh
Confidence 9999999999998764
No 24
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.55 E-value=4.1e-14 Score=154.31 Aligned_cols=147 Identities=12% Similarity=0.201 Sum_probs=120.7
Q ss_pred CcchHHHHHHhhCCCC---CCCCchhhh---hccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCC
Q 004131 557 SEGLYEEQAHLRGVPL---LESRPKYKM---RQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNG 628 (772)
Q Consensus 557 ~~~iy~~~l~~kg~p~---L~~~~~~~l---~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~ 628 (772)
..++|...++.+|.-. ...++...+ ..++++|+|++ + ++++++++++.++.+.|.+++++.+||+|++
T Consensus 169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~-~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~--- 244 (326)
T PRK10892 169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDE-IPHVSKTASLRDALLEITRKNLGMTVICDDN--- 244 (326)
T ss_pred HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCC-CeEECCCCCHHHHHHHHHhcCCCeEEEEcCC---
Confidence 4578888888888765 555555556 78899999997 7 9999999999999999988888777888876
Q ss_pred CcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCC
Q 004131 629 ERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPS 708 (772)
Q Consensus 629 ~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~ 708 (772)
++++|+|+.+|+.+.+.... . . ...++.++|+++
T Consensus 245 -g~lvGivt~~Dl~~~~~~~~-----~-----------------------------~-----------~~~~v~~im~~~ 278 (326)
T PRK10892 245 -MKIEGIFTDGDLRRVFDMGI-----D-----------------------------L-----------RQASIADVMTPG 278 (326)
T ss_pred -CcEEEEEecHHHHHHHhcCC-----C-----------------------------c-----------ccCCHHHhcCCC
Confidence 89999999999987543221 0 0 001244569999
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 709 p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
+.++.+++++.+++++|.+.+.+++||+|+ |+++|+||++|++++
T Consensus 279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~lvGiit~~dil~~ 323 (326)
T PRK10892 279 GIRVRPGILAVDALNLMQSRHITSVLVADG-DHLLGVLHMHDLLRA 323 (326)
T ss_pred CEEECCCCCHHHHHHHHHHCCCcEEEEeeC-CEEEEEEEhHHhHhc
Confidence 999999999999999999999999999986 899999999999875
No 25
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.55 E-value=5.2e-14 Score=153.19 Aligned_cols=148 Identities=13% Similarity=0.091 Sum_probs=122.8
Q ss_pred CcchHHHHHHhhCCCC---CCCCchhhhh---ccchhhhccCC-ceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCC
Q 004131 557 SEGLYEEQAHLRGVPL---LESRPKYKMR---QMTAKEACGAQ-KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGE 629 (772)
Q Consensus 557 ~~~iy~~~l~~kg~p~---L~~~~~~~l~---~l~v~diM~~~-~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~ 629 (772)
..++|...+..++.-. ...++...++ ..+|+|+|+++ +++++++++++.++.+.|.+++...+||+|++
T Consensus 164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~---- 239 (321)
T PRK11543 164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ---- 239 (321)
T ss_pred HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC----
Confidence 3478888888777655 5566677788 89999999873 27889999999999999998888999999986
Q ss_pred cEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCC
Q 004131 630 RLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSP 709 (772)
Q Consensus 630 ~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p 709 (772)
++++|+|+.+|+.+.+.... .. ..++.++|++++
T Consensus 240 g~~iG~vt~~dl~~~~~~~~----~~------------------------------------------~~~v~~im~~~~ 273 (321)
T PRK11543 240 QQVQGVFTDGDLRRWLVGGG----AL------------------------------------------TTPVNEAMTRGG 273 (321)
T ss_pred CcEEEEecHHHHHHHHhCCC----Cc------------------------------------------CCcHHHhcCCCC
Confidence 89999999999987553221 00 012345599999
Q ss_pred ceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 710 YVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 710 ~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|++++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999999999999999999999988999999999999864
No 26
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.53 E-value=2.6e-14 Score=159.27 Aligned_cols=178 Identities=21% Similarity=0.220 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHH
Q 004131 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (772)
Q Consensus 73 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (772)
...+...+++|+++|+++.+|+....++++++... . .++.+. .++.+++.+.+ .++.|+..|+|.++
T Consensus 203 ~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~~-----~----~~~~~~---~~i~gll~~~~-~~~~p~~~g~G~~~ 269 (383)
T cd00400 203 LLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRRL-----P----IPPWLR---PALGGLLLGLL-GLFLPQVLGSGYGA 269 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C----CcHHHH---HHHHHHHHHHH-HHHHHHHHcCcHHH
Confidence 44556889999999999999999998887654321 0 111111 22334444443 45669999999999
Q ss_pred HHHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhH
Q 004131 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (772)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~l 232 (772)
++...++.. +-......++.|++.+.+++++|.++|.|+|++.+|+++|..+++.. +. ++. .++.+.+.+
T Consensus 270 ~~~~~~~~~-~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~----~~---~~~--~~~~~~~~~ 339 (383)
T cd00400 270 ILLALAGEL-SLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLL----PA---LFP--GLVASPGAY 339 (383)
T ss_pred HHHHHcCCh-hHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHH----HH---hCC--cccCChHHH
Confidence 888877622 21223457899999999999999999999999999999999999721 11 111 134568899
Q ss_pred HHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHH
Q 004131 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSA 276 (772)
Q Consensus 233 i~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~ 276 (772)
+.+||+|++++++|+|+++++|++|++.+ .+...+.++++.
T Consensus 340 ~~~G~aa~la~~~~aPlt~~vl~~Eltg~---~~~l~p~~ia~~ 380 (383)
T cd00400 340 ALVGMAALLAAVLRAPLTAILLVLELTGD---YSLLLPLMLAVV 380 (383)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHhCC---hhhHHHHHHHHH
Confidence 99999999999999999999999999874 334444444333
No 27
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.52 E-value=1.5e-14 Score=149.26 Aligned_cols=151 Identities=19% Similarity=0.235 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCcchHHHHHHhhCCCCCCCCchhhhhccchhhhccC--CceEEecCcccHHHHHHHHhhCC
Q 004131 538 FLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNK 615 (772)
Q Consensus 538 ~l~pimia~~va~~v~~~~~~~iy~~~l~~kg~p~L~~~~~~~l~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~ 615 (772)
.-+|++-+.-=.+.|+...|+.+|+++++. +-++|+|+|++ + ..++.+.+++++-.++-++++
T Consensus 156 ~~lPvlstsYDTFTVAtmIN~Al~n~lIKk--------------dI~~Vedi~~P~~~-~~yL~~~d~v~d~~~l~~kt~ 220 (432)
T COG4109 156 KGLPVLSTSYDTFTVATMINKALSNQLIKK--------------DIITVEDIMTPLED-TSYLRETDTVEDWLDLVEKTG 220 (432)
T ss_pred cCCceEEecccceeHHHHHHHHHHHhhhhh--------------heeeHHHhcccccc-ceeccccccHHHHHHHHHHcC
Confidence 345666555556667777788999998863 34789999994 6 888999999999999999999
Q ss_pred CCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccccccccCCCCCCcccccCCcccc
Q 004131 616 HNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDM 695 (772)
Q Consensus 616 ~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~ 695 (772)
|+.|||+|+. .+++|+|+.+|+... +.
T Consensus 221 ~sRfPVvn~~----~kvvGvVt~rDv~~~---~~---------------------------------------------- 247 (432)
T COG4109 221 HSRFPVVNRS----MKVVGVVTMRDVLDK---KP---------------------------------------------- 247 (432)
T ss_pred CCccceeccc----ceEEEEEEehhhhcC---CC----------------------------------------------
Confidence 9999999997 899999999998541 00
Q ss_pred cccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcCC
Q 004131 696 EMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 696 ~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~ 758 (772)
...+..+|+++|++|.+.+++..+.++|.-.|+..+||+|++++++|+|||+|+++.+..-
T Consensus 248 --~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 248 --STTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred --CccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHh
Confidence 0123445999999999999999999999999999999999999999999999999987643
No 28
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.52 E-value=4.5e-14 Score=165.28 Aligned_cols=180 Identities=19% Similarity=0.220 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHH
Q 004131 76 WFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKG 155 (772)
Q Consensus 76 w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~ 155 (772)
+.+.+++|+++|+++.+|...+.+.++++... .. +.++.. .+.+++.+.+ .++.|+..|+|.+.++.
T Consensus 239 ~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~~--------~~-~~~~~~---~~~gl~~g~l-~~~~p~~~g~G~~~i~~ 305 (574)
T PRK01862 239 VLLFVALGVLCGAAAPQFLRLLDASKNQFKRL--------PV-PLPVRL---ALGGLLVGVI-SVWVPEVWGNGYSVVNT 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CC-chhHHH---HHHHHHHHHH-HHHHHHHhcCCHHHHHH
Confidence 44678999999999999999888776542211 11 111122 2333444443 45569999999999998
Q ss_pred HHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcc-cCCh-hhhhhHH
Q 004131 156 YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQV-FRSD-RDRRDLV 233 (772)
Q Consensus 156 ~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~-f~~~-~~~r~li 233 (772)
.+++.. .-..-...++.|++.+.+++++|.++|.++|++.+||++|+.+++. ++. +.+. .+.-.++
T Consensus 306 ~~~~~~-~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~-----------~~~~~~~~~~~~~~~a 373 (574)
T PRK01862 306 ILHAPW-TWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLA-----------MHALWPGHTSAPFAYA 373 (574)
T ss_pred HHcCCc-hHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHH-----------HHHhCCCcccchHHHH
Confidence 887621 1112234568999999999999999999999999999999999972 221 1111 2233488
Q ss_pred HhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHH
Q 004131 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVR 283 (772)
Q Consensus 234 ~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~ 283 (772)
.+||||.+|+++|||+++++|++|++.+ .....+.++++++|.++.+
T Consensus 374 ~vGmaa~~aa~~~aPlt~i~l~~Elt~~---~~~~~P~~ia~~~a~~v~~ 420 (574)
T PRK01862 374 MVGMGAFLAGATQAPLMAILMIFEMTLS---YQVVLPLMVSCVVAYFTAR 420 (574)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999754 4456677777777666655
No 29
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.51 E-value=7.3e-14 Score=156.40 Aligned_cols=183 Identities=21% Similarity=0.267 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHH
Q 004131 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (772)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (772)
..+.+.+++|+++|+++.+|...+.+.+++.... ...+++ .. .+.+++.+.+.. +.|+..|.|.+.+
T Consensus 219 ~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~--------~~~~~~-~~---~lggli~g~l~~-~~p~~~G~G~~~i 285 (418)
T PRK01610 219 RDYALIISTGLLAGLCGPLLLTLMNASHRGFVSL--------KLAPPW-QL---ALGGLIVGLLSL-FTPAVWGNGYSVV 285 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--------ccchhH-HH---HHHHHHHHHHHH-HhhHHhCCcHHHH
Confidence 3455789999999999999999888776543211 111111 11 234445555444 4499999999999
Q ss_pred HHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcc-cCChhh-hhh
Q 004131 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQV-FRSDRD-RRD 231 (772)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~-f~~~~~-~r~ 231 (772)
+..+++.. .-.+-.-.++.|++.+.+|+++|.++|.+.|++.+|+++|+.+++. +.. +.+..+ .-.
T Consensus 286 ~~~~~~~~-~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~-----------~~~~~~~~~~~~~~ 353 (418)
T PRK01610 286 QSFLTAPP-LLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRS-----------LGLWLPDGEEITLL 353 (418)
T ss_pred HHHHcCCh-hHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH-----------HHHhCCCcccchHH
Confidence 98887521 1111122358899999999999999999999999999999999973 221 112222 345
Q ss_pred HHHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 004131 232 LVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (772)
Q Consensus 232 li~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (772)
+..+||||.+|+++|||++++++++|++.++ ....+.++++++|+++.+.
T Consensus 354 ~a~vGmaA~laa~~~aPltaivl~~Eltg~~---~~~~p~~ia~~ia~~vs~~ 403 (418)
T PRK01610 354 LGLTGMATLLAATTHAPIMSTLMICEMTGEY---QLLPGLLIACVIASVISRT 403 (418)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHhCCH---hHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999997653 3355666677777766654
No 30
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.47 E-value=3.1e-13 Score=124.80 Aligned_cols=123 Identities=24% Similarity=0.364 Sum_probs=104.2
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCC
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~ 661 (772)
..++++++|++| ++.+++++++.+++++|++.+++.+||+++ ++++|.|+.+++.+.+.+.. +
T Consensus 63 ~~ita~~iM~sp-vv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-----~k~VGsItE~~iv~~~le~~----e------- 125 (187)
T COG3620 63 TRITAKTIMHSP-VVSVSPDDSISDVVNLMRDKGISQLPVIEE-----DKVVGSITENDIVRALLEGM----E------- 125 (187)
T ss_pred ceEeHhhhccCC-eeEECchhhHHHHHHHHHHcCCccCceeeC-----CeeeeeecHHHHHHHHhccc----c-------
Confidence 578999999999 999999999999999999999999999998 69999999999998765432 0
Q ss_pred CCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 004131 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (772)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~ 741 (772)
.+. ...++++|..+..+|++++++..+.+++..+.. +.|+++ |+
T Consensus 126 ----------------------~i~-----------~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e~-G~ 169 (187)
T COG3620 126 ----------------------SIR-----------SLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVEN-GK 169 (187)
T ss_pred ----------------------chh-----------hhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEeC-Cc
Confidence 011 123556699999999999999999999887664 777755 99
Q ss_pred EEEEEeHhhhhhHhcC
Q 004131 742 VIGLITRKDLLIEDGE 757 (772)
Q Consensus 742 lvGIITr~DLl~~~~~ 757 (772)
++||||+.|+++...+
T Consensus 170 ~vGIITk~DI~k~~~~ 185 (187)
T COG3620 170 VVGIITKADIMKLLAG 185 (187)
T ss_pred eEEEEeHHHHHHHHhc
Confidence 9999999999998754
No 31
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=9e-13 Score=121.54 Aligned_cols=118 Identities=17% Similarity=0.296 Sum_probs=93.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+++.+.+||+|++ ++++|+++++|+...+..+. .....
T Consensus 3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~----~~~~Giv~~~dl~~~~~~~~-~~~~~------------------- 58 (120)
T cd04641 3 IATARPDTPLIDVLDMLVERRVSALPIVDEN----GKVVDVYSRFDVINLAKEGA-YNNLD------------------- 58 (120)
T ss_pred cEEEcCCCCHHHHHHHHHHcCCCeeeEECCC----CeEEEEEeHHHHHHHHhcCc-ccccc-------------------
Confidence 7889999999999999999999999999875 89999999999987654322 00000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
.++.+ .+..++.|..++.++++++++.+++++|.+.+.+++||+|++|+++|+||++|++++
T Consensus 59 --------~~~~~----------~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~ 120 (120)
T cd04641 59 --------LTVGE----------ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred --------CCHHH----------HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence 00000 011233466677899999999999999999999999999988999999999999863
No 32
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=1.2e-12 Score=116.62 Aligned_cols=94 Identities=15% Similarity=0.240 Sum_probs=84.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
++++++++++.++.+.|.+++++++||+|++ +++++|+|+.+|+.+.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~---~~~~~Givt~~Dl~~~------------------------------ 49 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSR---KQQFVGMLTITDFILI------------------------------ 49 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCC---CCEEEEEEEHHHHhhh------------------------------
Confidence 7889999999999999999999999999863 1789999999999642
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~ 753 (772)
+. +.++.+++++.++.++|.+.+.+++||+|++ |+++|+||++|+++
T Consensus 50 ------------------------------~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 50 ------------------------------LR--LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred ------------------------------ee--eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 11 5689999999999999999999999999987 89999999999975
No 33
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.42 E-value=1.1e-12 Score=145.56 Aligned_cols=172 Identities=17% Similarity=0.222 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhc-cccccCCCHH
Q 004131 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKF-APAAAGSGIP 151 (772)
Q Consensus 73 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~p~a~GsGip 151 (772)
+..+.+.+++|+++|+++.+|+..+.++++++.+. ....++ . +.+.+++.+.+..+. .|...|.|.+
T Consensus 197 ~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~--------~~~~~~-~---~~iggl~~g~~~~~~~~~~~~G~g~~ 264 (378)
T cd03682 197 PLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKR--------IKNPYL-R---PFVGGLLIILLVYLLGSRRYLGLGTP 264 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cCCcHH-H---HHHHHHHHHHHHHHhcCCccccCCHH
Confidence 33445788999999999999999998887664322 111121 1 123344444443332 3556799988
Q ss_pred HHHH-HHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhh
Q 004131 152 EIKG-YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRR 230 (772)
Q Consensus 152 ev~~-~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r 230 (772)
+++. ..++ ..+...++.|++.+.+|+++|.++|.+.|++.+|+++|+.+++ +++. +..
T Consensus 265 ~i~~~~~~~-----~~~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~-----------~~~~-----~~~ 323 (378)
T cd03682 265 LIEDSFFGG-----TVYPYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAP-----------ILGL-----PVS 323 (378)
T ss_pred HHHHHHhcC-----CchHHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHH-----------HHCC-----CHH
Confidence 8877 4332 2345668999999999999999999999999999999999997 3321 235
Q ss_pred hHHHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHH
Q 004131 231 DLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVV 281 (772)
Q Consensus 231 ~li~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v 281 (772)
.++.+||||.+++++|+|++++++++|++.. ....+.++++.+|+++
T Consensus 324 ~~~~~Gmaa~laa~~raPlt~ivl~~Eltg~----~~~~p~~ia~~ia~~~ 370 (378)
T cd03682 324 LLAALGFVAVFAGATNTPLACIIMGIELFGA----ENAPYFFIACLVAYLF 370 (378)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHhCc----cchHHHHHHHHHHHHH
Confidence 7899999999999999999999999999863 2233444445444443
No 34
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.42 E-value=7.9e-13 Score=148.13 Aligned_cols=186 Identities=21% Similarity=0.223 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHH
Q 004131 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (772)
Q Consensus 73 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (772)
...+.+.+++|+++|+++.+|...+++.++++.+.. .. ..++ ... +.+++.+.+. ++.|+..|+|-+.
T Consensus 204 ~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~----~~---~~~~-~~~---l~gl~~~~~~-~~~p~~~g~G~~~ 271 (402)
T cd01031 204 LKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK----KL---PREL-RVL---LPGLLIGPLG-LLLPEALGGGHGL 271 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cC---ChhH-HHH---HHHHHHHHHH-HHHHHHhCCHHHH
Confidence 344557889999999999999999888876543220 01 1111 111 2333334333 3479999999877
Q ss_pred HHHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhH
Q 004131 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (772)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~l 232 (772)
++..+++. .+-..-...++.|++.+.+++++|.++|.+.|++.+||++|..+++.... +++. +..+...+
T Consensus 272 i~~~~~~~-~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~-------~~~~--~~~~~~~~ 341 (402)
T cd01031 272 ILSLAGGN-FSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQ-------LGPI--PISAPATF 341 (402)
T ss_pred HHHHHcCC-chHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHH-------hcCc--ccccHHHH
Confidence 87777652 22222234578999999999999999999999999999999999873211 1111 34567899
Q ss_pred HHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHH
Q 004131 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVR 283 (772)
Q Consensus 233 i~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~ 283 (772)
+.+||||.+++++|+|++++++++|.+.+ .+.+.+.++++++|..+.+
T Consensus 342 a~~G~aa~~a~~~~aPlta~vl~~Eltg~---~~~l~p~~ia~~ia~~v~~ 389 (402)
T cd01031 342 AIAGMAAFFAAVVRAPITAIILVTEMTGN---FNLLLPLMVVCLVAYLVAD 389 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998875 3455666666666665554
No 35
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=1.7e-12 Score=118.54 Aligned_cols=111 Identities=15% Similarity=0.181 Sum_probs=93.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.+.+.... . .
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----g~~~G~vt~~dl~~~~~~~~-~-~--------------------- 55 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH----GKLAGVLTKTDVVRQMGRCG-G-P--------------------- 55 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCC----CCEEEEEehHHHHHHHhhcC-C-C---------------------
Confidence 6788999999999999999999999999976 89999999999987543211 0 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
.....+.++|++++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 56 ---------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 56 ---------------------GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ---------------------cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 0011244558889999999999999999999999999999998899999999999975
No 36
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1.8e-12 Score=117.89 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=90.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+++++.+||+|++ ++++|+|+..|+.+......
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~----~~~~G~v~~~dl~~~~~~~~------------------------- 53 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDEE----NKVLGQVTLSDLLEIGPNDY------------------------- 53 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC----CCEEEEEEHHHHHhhccccc-------------------------
Confidence 6788999999999999999999999999976 89999999999976311100
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
. ...+.++|..++.++++++++.+++++|.+.+.+++||+|++|+++|+||++|+++
T Consensus 54 ------~----------------~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 54 ------E----------------TLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ------c----------------ccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 0 01133447778889999999999999999999999999998899999999999976
No 37
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.41 E-value=1e-12 Score=148.22 Aligned_cols=145 Identities=16% Similarity=0.219 Sum_probs=116.5
Q ss_pred cchHHHHHHhhCCCCCCC-----CchhhhhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEE
Q 004131 558 EGLYEEQAHLRGVPLLES-----RPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLV 632 (772)
Q Consensus 558 ~~iy~~~l~~kg~p~L~~-----~~~~~l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~l 632 (772)
..+|..+.+..|+-.++. +....++.++++++|.++ ++++++++++.++.+.|.+++++.+||+|++ +++
T Consensus 58 ~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~~-pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~----gkl 132 (479)
T PRK07807 58 RRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFDT-PVTLSPDDTVGDALALLPKRAHGAVVVVDEE----GRP 132 (479)
T ss_pred HHHHHHHHHCCCceEeeCCCCHHHHHHHHhhcccccccccC-CeEECCCCCHHHHHHHHHhcCCceEEEECCC----CeE
Confidence 345554454443333322 233457788999999999 9999999999999999999999999999976 899
Q ss_pred EEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCcee
Q 004131 633 IGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVV 712 (772)
Q Consensus 633 vGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V 712 (772)
+|+|+.+|+... .. ..+++++|++++.++
T Consensus 133 vGIVT~rDL~~~---~~------------------------------------------------~~~V~diMt~~~itV 161 (479)
T PRK07807 133 VGVVTEADCAGV---DR------------------------------------------------FTQVRDVMSTDLVTL 161 (479)
T ss_pred EEEEeHHHHhcC---cc------------------------------------------------CCCHHHhccCCceEE
Confidence 999999998421 00 012445599999999
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcCC
Q 004131 713 PEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 713 ~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~ 758 (772)
++++++.+++++|.+++.+++||+|++|+++|+||++||++.....
T Consensus 162 ~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 162 PAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 9999999999999999999999999889999999999999976543
No 38
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.39 E-value=1.8e-12 Score=144.68 Aligned_cols=127 Identities=21% Similarity=0.314 Sum_probs=108.2
Q ss_pred hhccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCC
Q 004131 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 581 l~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~ 658 (772)
+++.+|+|+|++ + +++++.+++++++.+.+.+++|+.+||++++. ++++|+|+.+|++..+..+
T Consensus 188 l~~~~v~diMtpr~~-v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~---d~ivGiv~~kDll~~~~~~---------- 253 (408)
T TIGR03520 188 FGNTDTKQVMRPRLD-IFALDIETSFSEIIPKIIENGYSRIPVYKETI---DNITGVLYIKDLLPHLNKK---------- 253 (408)
T ss_pred cCCCEeeeeCCchHh-EEEEECCCCHHHHHHHHHhCCCCEEEEEcCCC---CceEEEEEHHHHHhHhccC----------
Confidence 568899999997 6 99999999999999999999999999998742 6899999999997532110
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~ 738 (772)
..+++++|. +|++|++++++.++++.|++.+.+..+|+|+
T Consensus 254 ---------------------------------------~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE 293 (408)
T TIGR03520 254 ---------------------------------------NFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE 293 (408)
T ss_pred ---------------------------------------CCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC
Confidence 012344564 5789999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhhHhcCCCcc
Q 004131 739 ASRVIGLITRKDLLIEDGEDSTT 761 (772)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~ 761 (772)
.|.++|+||.+|+++.+.++..+
T Consensus 294 ~G~~~GiVT~eDileeivgei~d 316 (408)
T TIGR03520 294 YGGTSGLVTLEDIIEEIVGDISD 316 (408)
T ss_pred CCCEEEEEEHHHHHHHHhCCCCC
Confidence 99999999999999999766543
No 39
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.38 E-value=2.4e-12 Score=137.31 Aligned_cols=129 Identities=20% Similarity=0.356 Sum_probs=107.2
Q ss_pred hhccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCC
Q 004131 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 581 l~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~ 658 (772)
++..+|+|+|++ + +++++.++++.++.+.+.+++|+.+||++++. ++++|+|+.+|++..+.... .
T Consensus 64 l~~~~V~diMtpr~~-i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~---d~iiGiv~~kDll~~~~~~~-----~--- 131 (292)
T PRK15094 64 IADQRVRDIMIPRSQ-MITLKRNQTLDECLDVIIESAHSRFPVISEDK---DHIEGILMAKDLLPFMRSDA-----E--- 131 (292)
T ss_pred cCCCEEeEEccchHH-EEEEeCCCCHHHHHHHHHhcCCcEEEEecCCC---CcEEEEEEHHHHHhHhhccC-----C---
Confidence 456699999998 6 99999999999999999999999999998642 58999999999986432111 0
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~ 738 (772)
..++.++|. ++.+|++++++.++++.|++.+.+.+||+|+
T Consensus 132 ---------------------------------------~~~l~~l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe 171 (292)
T PRK15094 132 ---------------------------------------AFSMDKVLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE 171 (292)
T ss_pred ---------------------------------------cCCHHHHcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC
Confidence 011334465 4568999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhhHhcCCCcc
Q 004131 739 ASRVIGLITRKDLLIEDGEDSTT 761 (772)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~ 761 (772)
.|.++|+||++|+++.+.++..+
T Consensus 172 ~G~viGiVTleDIle~ivGei~d 194 (292)
T PRK15094 172 FGGVSGLVTIEDILELIVGEIED 194 (292)
T ss_pred CCCEEEEeEHHHHHHHHhCCCcc
Confidence 99999999999999999877644
No 40
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=6e-12 Score=116.39 Aligned_cols=121 Identities=21% Similarity=0.384 Sum_probs=95.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+.+||...+.... ... ..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~~Giv~~~~l~~~~~~~~-~~~-~~------------------ 59 (124)
T cd04600 4 VVTVTPDTSLEEAWALLRRHRIKALPVVDGD----RRLVGIVTQRDLLRHARPDG-RRP-LR------------------ 59 (124)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCceeeEECCC----CCEEEEEEHHHHHhhhcccc-cch-hh------------------
Confidence 7889999999999999999999999999876 78999999999987543221 000 00
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
.... ......++.++|++.+.++++++++.+++++|.+.+.+.+||+|++|+++|+||++|++++
T Consensus 60 -----------~~~~----~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 60 -----------GRLR----GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred -----------hhhh----cccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 0000 0011234566788999999999999999999999999999999988999999999999763
No 41
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=7.8e-12 Score=113.20 Aligned_cols=109 Identities=23% Similarity=0.310 Sum_probs=92.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++++++++.+.+.+.+++.+||+|++ ++++|+|+..|+.+.+.... .
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~----~~~~G~v~~~~l~~~~~~~~-----~------------------- 54 (111)
T cd04639 3 FETLSPADTLDDAADALLATTQHEFPVVDGD----GHLVGLLTRDDLIRALAEGG-----P------------------- 54 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHcCCCcceEECCC----CcEEEEeeHHHHHHHHHhcC-----C-------------------
Confidence 6778999999999999988889999999976 78999999999987653221 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
..++.++|++++.+++++++++++++.|.+.+.+++||+|++|+++|+||++|+.++
T Consensus 55 -----------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~ 111 (111)
T cd04639 55 -----------------------DAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGEL 111 (111)
T ss_pred -----------------------CCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhcC
Confidence 012344588888999999999999999999999999999988999999999999763
No 42
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=1.4e-11 Score=111.36 Aligned_cols=106 Identities=17% Similarity=0.286 Sum_probs=91.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.+.+++++.+||+|++ ++++|+++.++++..+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~~G~v~~~~l~~~~~~~~------------------------- 54 (110)
T cd04605 4 VVTISEDASIKEAAKLMIEENINHLPVVDED----GRLVGIVTSWDISKAVARDK------------------------- 54 (110)
T ss_pred CEEECCCCCHHHHHHHHHhCCCceEEEECCC----CcEEEEEeHHHHHHHHhhCc-------------------------
Confidence 7789999999999999999999999999876 89999999999976542211
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
.++.++|.+++.+++++++++++++.|.+.+.+.+||+|++|+++|+||++|+.+
T Consensus 55 ------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 55 ------------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred ------------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 0133457788889999999999999999999999999998899999999999964
No 43
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1e-11 Score=114.93 Aligned_cols=123 Identities=18% Similarity=0.332 Sum_probs=95.9
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++.++.++.+.|.+.+++.+||+|++ +++++|+|++.|+...+.+...+...+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~---~~~~~G~v~~~dl~~~~~~~~~~~~~~~------------------ 61 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG---TGKLVGIITATDILKYLGGGEKFNKIKT------------------ 61 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCcccceeEeCC---CCEEEEEEEHHHHHHHhhccchhccccc------------------
Confidence 6788999999999999999999999999873 2789999999999876543320100000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
.. .......++.++|.+++.++++++++.++++.|++.+.+++||+|++|+++|+||++|++++
T Consensus 62 -----------~~-----~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 62 -----------GN-----GLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred -----------cc-----cchhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 00 00001234566788889999999999999999999999999999988999999999999864
No 44
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=6.9e-12 Score=118.22 Aligned_cols=125 Identities=22% Similarity=0.345 Sum_probs=95.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+++++.+||+|++ ++++|+|++.|+.+.+..+. ..... .+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~----~~~~Gvi~~~dl~~~~~~~~-~~~~~----~~------------- 61 (135)
T cd04586 4 VVTVSPETSVAEAARLMLDNHISGLPVVDDD----GRLVGIVSEGDLLRRAELGT-ERRRA----RW------------- 61 (135)
T ss_pred CEEeCCCCCHHHHHHHHHHcCCCCceEECCC----CCEEEEeeHHHHHHHhcccC-cchhh----hH-------------
Confidence 7889999999999999999999999999976 79999999999987543321 00000 00
Q ss_pred ccccCCCCCCcccccCCcc------cccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeH
Q 004131 675 VKPASSKGLSIDDIHLSSD------DMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITR 748 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~------~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr 748 (772)
.++....+ ......+++++|++++.++.+++++.++++.|++.+.+++||+| +|+++|+||+
T Consensus 62 -----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~ 129 (135)
T cd04586 62 -----------LDLLAGAEELAAAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSR 129 (135)
T ss_pred -----------HHHhcchHHHHHHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEh
Confidence 00000000 00112356777988999999999999999999999999999999 6999999999
Q ss_pred hhhhh
Q 004131 749 KDLLI 753 (772)
Q Consensus 749 ~DLl~ 753 (772)
+|+++
T Consensus 130 ~di~~ 134 (135)
T cd04586 130 ADLLR 134 (135)
T ss_pred Hhhhc
Confidence 99976
No 45
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=8.2e-12 Score=112.73 Aligned_cols=104 Identities=22% Similarity=0.329 Sum_probs=90.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++++++++.+.+.+++++.+||+|++ ++++|+|+..++.... .
T Consensus 4 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~----~~~~G~v~~~~l~~~~---~------------------------- 51 (108)
T cd04596 4 TGYLTTTDTVKDWHELNKETGHSRFPVVDEK----NKVVGIVTSKDVAGKD---P------------------------- 51 (108)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCCceeEECCC----CeEEEEecHHHHhccc---c-------------------------
Confidence 7788999999999999999888999999876 8999999999996310 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
..++.++|++.+.++++++++.+++++|.+.+.+.+||+|++|+++|++|++|+++
T Consensus 52 -----------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 -----------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred -----------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 01244458888899999999999999999999999999998899999999999975
No 46
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.4e-11 Score=112.13 Aligned_cols=109 Identities=21% Similarity=0.277 Sum_probs=91.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
..++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.+.. ..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----~~~~G~v~~~dl~~~~~~~~----~~------------------- 56 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN----GRLLGTVTDGDIRRALLKGL----SL------------------- 56 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC----CCEEEEEEcHHHHHHHhcCC----Cc-------------------
Confidence 5678999999999999998888999999876 89999999999987543221 00
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
..++.++|++.+.++++++++.+++++|.+.+.+++||+|++|+++|+||++|++.
T Consensus 57 -----------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 57 -----------------------DDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred -----------------------CCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 01234458888889999999999999999999999999998899999999999974
No 47
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.32 E-value=1.5e-11 Score=112.29 Aligned_cols=111 Identities=24% Similarity=0.344 Sum_probs=92.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+||.+.+.+.. ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~~G~v~~~dl~~~~~~~~-~~---------------------- 55 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVDRD----GGVVGIITLPDLLRALEADE-AG---------------------- 55 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC----CCEEEEEEHHHHHHHHhccc-cc----------------------
Confidence 6678899999999999999999999999986 89999999999987654321 00
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC--CeEEEEEeHhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA--SRVIGLITRKDLL 752 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~--g~lvGIITr~DLl 752 (772)
....++.+|.+++.++.+++++.+++++|.+.+.+++||+|++ |+++|+||++|++
T Consensus 56 ----------------------~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~ 113 (115)
T cd04593 56 ----------------------EPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL 113 (115)
T ss_pred ----------------------ccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence 0011344588888999999999999999999999999999987 7999999999998
Q ss_pred hH
Q 004131 753 IE 754 (772)
Q Consensus 753 ~~ 754 (772)
++
T Consensus 114 ~~ 115 (115)
T cd04593 114 LA 115 (115)
T ss_pred cC
Confidence 63
No 48
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.32 E-value=1.3e-11 Score=111.94 Aligned_cols=110 Identities=22% Similarity=0.401 Sum_probs=93.6
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
++++++++++.++.+.|.+.+++.+||+|++ ++++|+|++.|+...+.+.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~G~v~~~~l~~~~~~~~-----~------------------- 54 (114)
T cd04613 3 VVTIPEDTPLNELLDVIAHSPENNFPVVDDD----GRLVGIVSLDDIREILFDPS-----L------------------- 54 (114)
T ss_pred ceeeCCCCcHHHHHHHHHhCCCcceeEECCC----CCEEEEEEHHHHHHHHhccc-----c-------------------
Confidence 6788999999999999999999999999986 78999999999987543221 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC-CCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR-ASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~-~g~lvGIITr~DLl~ 753 (772)
....++.++|++++.++++++++.++++.|.+.+.+++||+|+ +++++|++|++|+++
T Consensus 55 ---------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 55 ---------------------YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred ---------------------cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 0012345568899999999999999999999999999999988 899999999999975
No 49
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=1.5e-11 Score=112.95 Aligned_cols=110 Identities=19% Similarity=0.229 Sum_probs=90.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+..|+.+....+...
T Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~----~~~~Givt~~dl~~~~~~~~~~----------------------- 55 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDED----GDLVGVVSRKDLLKASIGGADL----------------------- 55 (118)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcCC----CCEEEEEEHHHHHHHHHcCCCc-----------------------
Confidence 6889999999999999988888999999976 7899999999998765322100
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCC---CeEEEEEeHh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA---SRVIGLITRK 749 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~---g~lvGIITr~ 749 (772)
+ ...+.++|.+ .+.++++++++.+++++|.+.+.+++||+|++ |+++|+||++
T Consensus 56 ------~----------------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~ 113 (118)
T cd04617 56 ------Q----------------KVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKT 113 (118)
T ss_pred ------c----------------CCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhh
Confidence 0 0112234664 57799999999999999999999999999987 6999999999
Q ss_pred hhhh
Q 004131 750 DLLI 753 (772)
Q Consensus 750 DLl~ 753 (772)
|+++
T Consensus 114 ~l~~ 117 (118)
T cd04617 114 NITK 117 (118)
T ss_pred heec
Confidence 9975
No 50
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=1.3e-11 Score=113.79 Aligned_cols=120 Identities=22% Similarity=0.326 Sum_probs=96.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++.+++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.... .....
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~~G~v~~~~l~~~~~~~~--~~~~~------------------ 58 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRIRHLPVVNED----GKLVGLLTQRDLLRAALSSL--SDNGE------------------ 58 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCcccccEECCC----CCEEEEEEHHHHHHHhcccc--ccccc------------------
Confidence 6788999999999999999999999999886 79999999999987654321 00000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
. .. +.....++.++|++++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|++++
T Consensus 59 -------~-~~--------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 59 -------E-SL--------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122 (122)
T ss_pred -------c-cc--------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence 0 00 0012345667788899999999999999999999999999999988999999999999864
No 51
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.2e-11 Score=110.28 Aligned_cols=111 Identities=14% Similarity=0.276 Sum_probs=92.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++.++.++.+.+.+.+++.+||+|++ ++++|+++.+|+.+.+.... . .
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~~Giv~~~~l~~~~~~~~-~-~--------------------- 55 (113)
T cd04623 3 VITVRPDATVAEAAKLMAEKNIGAVVVVDDG----GRLVGIFSERDIVRKVALRG-A-S--------------------- 55 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEECCC----CCEEEEEehHHHHHHHhhcC-C-C---------------------
Confidence 6778999999999999999999999999876 78999999999987653321 0 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
....+++++|++++.++++++++.++++.|.+.+.+++||+|+ |+++|+||++|++++
T Consensus 56 ---------------------~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 56 ---------------------ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVKA 113 (113)
T ss_pred ---------------------ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhcC
Confidence 0012345568888899999999999999999999999999998 999999999999763
No 52
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.31 E-value=7.9e-12 Score=116.34 Aligned_cols=112 Identities=22% Similarity=0.268 Sum_probs=92.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|++++++.+||+|++ ++++|+++.+|+...+..+. ..
T Consensus 4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~----~~~~Gii~~~dl~~~~~~~~-~~---------------------- 56 (124)
T cd04608 4 PVTVLPTVTCAEAIEILKEKGFDQLPVVDES----GKILGMVTLGNLLSSLSSGK-VQ---------------------- 56 (124)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcCC----CCEEEEEEHHHHHHHHHHhc-cC----------------------
Confidence 7889999999999999999999999999886 78999999999987554322 00
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHH---------HcCCCEEEEecCCCeEEEE
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFR---------QLGLRHIFVVPRASRVIGL 745 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~---------~~glr~lpVVd~~g~lvGI 745 (772)
....+.++|++++.++.+++++.++.+++. +.+.+++||+|++|+++||
T Consensus 57 ----------------------~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Gi 114 (124)
T cd04608 57 ----------------------PSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGI 114 (124)
T ss_pred ----------------------CCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEE
Confidence 012345569999999999999999999653 2367889999988999999
Q ss_pred EeHhhhhhHh
Q 004131 746 ITRKDLLIED 755 (772)
Q Consensus 746 ITr~DLl~~~ 755 (772)
||++|+++++
T Consensus 115 vt~~Dl~~~~ 124 (124)
T cd04608 115 VTKIDLLSYI 124 (124)
T ss_pred EehhHhhhhC
Confidence 9999999863
No 53
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.31 E-value=2.5e-11 Score=109.26 Aligned_cols=105 Identities=24% Similarity=0.360 Sum_probs=90.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+..++++.++.++.+.|.+++++.+||+|++ ++++|+++..|+.......
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----~~~~G~v~~~dl~~~~~~~-------------------------- 53 (109)
T cd04583 4 PVTITPDRTLAEAIKLMRDKKVDSLLVVDKD----NKLLGIVSLESLEQAYKEA-------------------------- 53 (109)
T ss_pred CEEECCCCCHHHHHHHHHHCCCceEEEEcCC----CcEEEEEEHHHHHHHhhcC--------------------------
Confidence 6778999999999999999899999999986 7899999999997643111
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
.++.++|.+.+.++++++++.++.+.|.+.+.+++||+|++|+++|++|++|+++
T Consensus 54 ------------------------~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 ------------------------KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred ------------------------CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 0133347788889999999999999999999999999998899999999999975
No 54
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=2.8e-11 Score=109.45 Aligned_cols=106 Identities=24% Similarity=0.399 Sum_probs=90.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++.++++.++.+.+.+.+++.+||+|+ ++++|+++..|+.+.+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~v~~~dl~~~~~~~~------------------------- 53 (110)
T cd04595 4 VKTVRPEATIEEARELLLRYGHTALPVVEG-----GRVVGIISRRDVEKALRHGL------------------------- 53 (110)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-----CEEEEEEEHHHHHHHHhccc-------------------------
Confidence 788999999999999999889999999987 68999999999987542211
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
...++.++|++.+.++++++++.+++++|.+.+.+++||+| +|+++|+||++|+++
T Consensus 54 ----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 ----------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ----------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 00124455888899999999999999999999999999999 599999999999975
No 55
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=1.5e-11 Score=111.75 Aligned_cols=111 Identities=21% Similarity=0.303 Sum_probs=92.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+..++.+.+.... +...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~~G~v~~~~l~~~~~~~~-~~~~-------------------- 57 (114)
T cd04629 3 PVTFTPDMSVTEAVEKLLKSKISGGPVVDDN----GNLVGFLSEQDCLKQLLESS-YHCD-------------------- 57 (114)
T ss_pred CeEeCCCCCHHHHHHHHHhcCCCCccEECCC----CeEEEEeehHHHHHHhhhhh-hccC--------------------
Confidence 6788999999999999988888899999876 79999999999987543321 0000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
...++.++|++++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 58 ----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 58 ----------------------GVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred ----------------------CCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 012345568888899999999999999999999999999998 99999999999976
No 56
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.30 E-value=1.7e-11 Score=139.31 Aligned_cols=146 Identities=14% Similarity=0.188 Sum_probs=109.9
Q ss_pred chHHHHHHhhCCCCCCCCc--hhhhh-ccchhhhcc---CCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEE
Q 004131 559 GLYEEQAHLRGVPLLESRP--KYKMR-QMTAKEACG---AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLV 632 (772)
Q Consensus 559 ~iy~~~l~~kg~p~L~~~~--~~~l~-~l~v~diM~---~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~l 632 (772)
.+--.+.+.+|+++++... +...+ -.+++++|. .+ +.++++++++.++.+.|.+++++.+||+|++ .+++++
T Consensus 66 alAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~-~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~-~~~gkL 143 (502)
T PRK07107 66 NMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVS-DSNLTPDNTLADVLDLKEKTGHSTVAVTEDG-TAHGKL 143 (502)
T ss_pred HHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCC-CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCC-CcCCEE
Confidence 4444556677777544221 11112 235788886 34 5689999999999999999999999999962 112799
Q ss_pred EEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccC--CCc
Q 004131 633 IGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPY 710 (772)
Q Consensus 633 vGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~--~p~ 710 (772)
+|+|+..|+.... .. ....++++|++ +++
T Consensus 144 vGIVT~~DLr~~~--~~-----------------------------------------------~~~~V~dIMt~~~~~i 174 (502)
T PRK07107 144 LGIVTSRDYRISR--MS-----------------------------------------------LDTKVKDFMTPFEKLV 174 (502)
T ss_pred EEEEEcHHhhccc--cC-----------------------------------------------CCCCHHHHhCCCCCeE
Confidence 9999999985310 00 00124455886 678
Q ss_pred eecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHh
Q 004131 711 VVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (772)
Q Consensus 711 ~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (772)
++++++++.+|+++|.+++++++||+|++|+++|+||++|+++..
T Consensus 175 tv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 175 TANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred EECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 899999999999999999999999999889999999999999864
No 57
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=1.9e-11 Score=111.44 Aligned_cols=108 Identities=25% Similarity=0.371 Sum_probs=87.4
Q ss_pred eEEecCcccHHHHHHHHhhCC-CCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNK-HNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~-~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (772)
+.++++++++.++.+.|.+.+ .+.+||+|++ ++++|+|+.+|+........ .
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~----~~~~G~v~~~dl~~~~~~~~--~--------------------- 55 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNE----GRYVGIISLADLRAIPTSQW--A--------------------- 55 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcCC----CcEEEEEEHHHHHHHHHhhc--c---------------------
Confidence 678899999999999987664 7899999876 78999999999987543211 0
Q ss_pred cccccCCCCCCcccccCCcccccccccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhh
Q 004131 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 751 (772)
Q Consensus 674 ~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DL 751 (772)
...+.++|++ .+.++.+++++.++++.|++.+.+++||+|++|+++|+||++|+
T Consensus 56 ------------------------~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di 111 (114)
T cd04801 56 ------------------------QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADL 111 (114)
T ss_pred ------------------------ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccce
Confidence 0112334653 25689999999999999999999999999988999999999998
Q ss_pred hh
Q 004131 752 LI 753 (772)
Q Consensus 752 l~ 753 (772)
++
T Consensus 112 ~~ 113 (114)
T cd04801 112 LR 113 (114)
T ss_pred ec
Confidence 75
No 58
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=3e-11 Score=109.53 Aligned_cols=109 Identities=17% Similarity=0.345 Sum_probs=92.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++.+++++.+.+.+.+++.+||+|++ ++++|+|+.+|+++.+.... .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----~~~~G~v~~~~l~~~~~~~~--~---------------------- 54 (112)
T cd04624 3 VVTVDPDTSIREAAKLMAEENVGSVVVVDPD----ERPIGIVTERDIVRAVAAGI--D---------------------- 54 (112)
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEECCC----CCEEEEeeHHHHHHHHhccC--C----------------------
Confidence 6778999999999999998899999999886 89999999999987553321 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
...++.++|++++.++.+++++.++++.|.+.+...+||+|++|+++|++|++|+++
T Consensus 55 ----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 55 ----------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ----------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 001234458888899999999999999999999999999998899999999999975
No 59
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=3.6e-11 Score=109.64 Aligned_cols=111 Identities=18% Similarity=0.295 Sum_probs=91.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++++.|.+.+.+.+||+|++ .++++|+++.+|+++.+.... ...
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~---~~~~~G~v~~~dl~~~~~~~~-~~~--------------------- 57 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGVSSLVVEKRR---ESDAYGIVTMRDILKKVVAEG-RDP--------------------- 57 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCEEEEEECC---CCcEEEEEehHHHHHHHHhCC-CCC---------------------
Confidence 7788999999999999998899999999863 168999999999987553321 000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
...++.++|++++.++++++++.+++++|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 58 ----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 ----------------------DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred ----------------------CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 001244558888899999999999999999999999999998 99999999999976
No 60
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=3e-11 Score=109.69 Aligned_cols=110 Identities=17% Similarity=0.290 Sum_probs=91.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+|+.+.+.....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~----~~~~G~v~~~dl~~~~~~~~~~~---------------------- 56 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK----KRLVGIITRYDVLSYALESEELK---------------------- 56 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC----CCEEEEEEHHHHHHhhhhhhhhc----------------------
Confidence 5678899999999999999999999999976 78999999999986432211000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
..++.++|.+++.++++++++.++++.|.+.+..++||+|++|+++|+||++|+++
T Consensus 57 -----------------------~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 57 -----------------------DAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred -----------------------CCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 01234458888899999999999999999999999999998899999999999975
No 61
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=3e-11 Score=111.85 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=91.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+.++..+||+|++ +++++|+|+..|+++.+..+. ....
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~---~~~~~Giv~~~dl~~~~~~~~-~~~~-------------------- 58 (123)
T cd04627 3 FIPVPSTASLFQAIEILGSGGIHRVAVTEEE---SGEVIGILSQRRLVEFLWENA-RSFP-------------------- 58 (123)
T ss_pred ceecCCCCCHHHHHHHHhhCCcceEEEEeCC---CCcEEEEEEHHHHHHHHHHhH-Hhcc--------------------
Confidence 6788999999999999998889999999873 168999999999988654321 0000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl 752 (772)
..+. ......+....|.+++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+-
T Consensus 59 ----------~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 59 ----------GLDP-----LYPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred ----------chhh-----hhhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 0000 00000122334778888999999999999999999999999999889999999999984
No 62
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.28 E-value=1.3e-11 Score=139.97 Aligned_cols=124 Identities=17% Similarity=0.209 Sum_probs=104.2
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhh-----CCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCC
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRT-----NKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~-----~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~ 656 (772)
+..+++++|+++ ++++++++|++++.+.+++ .+...+||+|++ ++++|+|+.+|++.. ..
T Consensus 129 ~e~tvg~iMt~~-~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~----~~l~GvV~l~dLl~a---~~------- 193 (449)
T TIGR00400 129 SDDSAGRIMTIE-YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES----KHLKGVLSIRDLILA---KP------- 193 (449)
T ss_pred CcchHHHhCcCc-eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC----CeEEEEEEHHHHhcC---CC-------
Confidence 456899999998 9999999999999999975 234567888876 899999999998531 00
Q ss_pred CCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 004131 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (772)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVV 736 (772)
...++++|++++.+++++++++++.+.|++++...+|||
T Consensus 194 -----------------------------------------~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVV 232 (449)
T TIGR00400 194 -----------------------------------------EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVV 232 (449)
T ss_pred -----------------------------------------CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEE
Confidence 012445588889999999999999999999999999999
Q ss_pred cCCCeEEEEEeHhhhhhHhcCCCcc
Q 004131 737 PRASRVIGLITRKDLLIEDGEDSTT 761 (772)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~~~~ 761 (772)
|++|+++|+||++|+++.+.++..+
T Consensus 233 D~~g~lvGiIt~~Dil~~l~~~~~e 257 (449)
T TIGR00400 233 DNEGRLVGIVTVDDIIDVIQSEATE 257 (449)
T ss_pred cCCCeEEEEEEHHHHHHHHHhhhHH
Confidence 9999999999999999998776543
No 63
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=2.7e-11 Score=113.69 Aligned_cols=130 Identities=22% Similarity=0.308 Sum_probs=96.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.+.+.+++.+||+|++ ++++|+++..|+...+.... ...... .+..
T Consensus 3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~----~~~~G~i~~~~l~~~~~~~~-~~~~~~-------------~~~~- 63 (132)
T cd04636 3 VITVKKDDTLRDVVEILLTGKISGVPVVDNE----GRVVGIVSEGDLIRKIYKGK-GLFYVT-------------LLYS- 63 (132)
T ss_pred CeEeCCCCcHHHHHHHHHHhCCCccceECCC----CCEEEEEeHHHHHHHHhccC-Cccccc-------------cccc-
Confidence 6788999999999999998899999999986 78999999999987654322 000000 0000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
....+ + ...+.....++.++|++++..+.+++++.+++++|.+.+.+++||+|+ |+++|++|++|++++
T Consensus 64 --------~~~~~-~-~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 64 --------VIFLD-E-SKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS 132 (132)
T ss_pred --------ccccc-h-HHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence 00000 0 000000123567779899999999999999999999999999999998 999999999999864
No 64
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=4e-11 Score=106.28 Aligned_cols=94 Identities=17% Similarity=0.290 Sum_probs=84.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
++++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+....
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~----~~~~Giv~~~dl~~~~----------------------------- 49 (96)
T cd04614 3 VPTVWEETPLPVAVRIMELANVKALPVLDDD----GKLSGIITERDLIAKS----------------------------- 49 (96)
T ss_pred ccEeCCCCcHHHHHHHHHHcCCCeEEEECCC----CCEEEEEEHHHHhcCC-----------------------------
Confidence 7788999999999999998999999999876 8999999999996410
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
.+.++++++++.++.++|.+.+.+++||+|++|+++|+||++|++++
T Consensus 50 ---------------------------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 50 ---------------------------------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred ---------------------------------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 04688999999999999999999999999988999999999999863
No 65
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.27 E-value=4.3e-11 Score=107.33 Aligned_cols=104 Identities=15% Similarity=0.184 Sum_probs=88.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++.++.++.+.|.+.+++.+||+|++ ++++|+++..|+.+....
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~----g~~~Giv~~~dl~~~~~~--------------------------- 51 (106)
T cd04582 3 PITVRPDDPLSDALGLMDDSDLRALTVVDAD----GQPLGFVTRREAARASGG--------------------------- 51 (106)
T ss_pred CcEecCCCcHHHHHHHHHhcCCCEEEEECCC----CCEEEEEeHHHHHHhccc---------------------------
Confidence 6788999999999999998888999999875 899999999999753100
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
++.++|.+.+.++++++++.++++.|.+.+...+||+|++|+++|+||++|++++
T Consensus 52 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~~ 106 (106)
T cd04582 52 -------------------------CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIADY 106 (106)
T ss_pred -------------------------chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 1223477777789999999999999999999999999998999999999999763
No 66
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.27 E-value=6.2e-11 Score=107.06 Aligned_cols=107 Identities=20% Similarity=0.361 Sum_probs=91.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~v~~~~l~~~~~~~~------------------------- 52 (110)
T cd04588 3 LITLNPNATLREAARLFNTHHIHGAPVVDD-----GKLVGIVTLSDIAHAIARGL------------------------- 52 (110)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCEEEEeeC-----CEEEEEEEHHHHHHHHhccc-------------------------
Confidence 678899999999999999999999999986 68999999999987543221
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
...++.++|++++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 53 ----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 53 ----------------------ELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred ----------------------cccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 002244457888899999999999999999999999999998899999999999975
No 67
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=3.1e-11 Score=111.20 Aligned_cols=120 Identities=17% Similarity=0.283 Sum_probs=93.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.+.+++++.+||+|++ ++++|++++.|++....... ......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~~G~v~~~~l~~~~~~~~-~~~~~~------------------ 59 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQKA----GELIGIITRRDIIRAGSVRT-SVEDQQ------------------ 59 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcccEECCC----CcEEEEEEcHHHHhhccccc-cccchh------------------
Confidence 6788999999999999998899999999876 89999999999976421100 000000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
.. ......++.++|.+++.++++++++.++++.|.+.+.+++||+|++|+++|++|++|++++
T Consensus 60 ---------------~~--~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 60 ---------------RT--QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred ---------------hh--hhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence 00 0001123455688888999999999999999999999999999988999999999999863
No 68
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.26 E-value=2.6e-11 Score=136.78 Aligned_cols=122 Identities=17% Similarity=0.231 Sum_probs=104.8
Q ss_pred hhhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCC
Q 004131 580 KMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (772)
Q Consensus 580 ~l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~ 659 (772)
.++.+++.++|.++ ++++++++++.++.+.|++.+++.+||+|+ ++++|+|+.+|+... . .
T Consensus 84 ~v~~VKv~eim~~~-pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-----gklvGIVT~rDL~~~----~----~----- 144 (475)
T TIGR01303 84 TVAFVKSRDLVLDT-PITLAPHDTVSDAMALIHKRAHGAAVVILE-----DRPVGLVTDSDLLGV----D----R----- 144 (475)
T ss_pred HHhhcchhhccccC-CeEECCCCCHHHHHHHHHhcCCeEEEEEEC-----CEEEEEEEHHHhhcC----C----C-----
Confidence 45678889999998 999999999999999999999988888885 689999999998421 0 0
Q ss_pred CCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 004131 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (772)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~ 739 (772)
..+++++|++++.++++++++.++.++|.+++.+++||+|++
T Consensus 145 --------------------------------------~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~ 186 (475)
T TIGR01303 145 --------------------------------------FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD 186 (475)
T ss_pred --------------------------------------CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC
Confidence 012445599999999999999999999999999999999988
Q ss_pred CeEEEEEeHhhhhhHhcCC
Q 004131 740 SRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 740 g~lvGIITr~DLl~~~~~~ 758 (772)
|+++|+||++||++.....
T Consensus 187 g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 187 GTLAGILTRTGALRATIYT 205 (475)
T ss_pred CeEEEEEEHHHHHHHHhCC
Confidence 9999999999999976544
No 69
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=4e-11 Score=109.36 Aligned_cols=114 Identities=18% Similarity=0.303 Sum_probs=90.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
++++++++++.++.+.+.+.+.+.+||+|++ ++++|+++.+|+.+.+.... ..+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~~Giv~~~dl~~~~~~~~--~~~-------------------- 56 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDKE----GKYVGTISLTDILWKLKGLE--NLD-------------------- 56 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeECCC----CcEEEEEeHHHHHHHhhccC--chh--------------------
Confidence 7889999999999999999999999999976 78999999999987553211 000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
..++ ....+.++|++.+.++++++++.++++.|.+.+ .+||+|++|+++|+||++|++++
T Consensus 57 ----------~~~~--------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 57 ----------LERL--------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred ----------HHHH--------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 0000 011244558888999999999999999998865 59999988999999999999864
No 70
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=4.9e-11 Score=108.03 Aligned_cols=108 Identities=17% Similarity=0.265 Sum_probs=90.9
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++++++++.+.+.+++++.+||+|++ ++++|+++.+|+........ .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----~~~~G~v~~~dl~~~~~~~~-~----------------------- 54 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVKDNE----EKLKGVVTFTDILDLDLFES-F----------------------- 54 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEEcCC----CCEEEEEehHHhHHHHhhcc-c-----------------------
Confidence 6788999999999999999999999999876 89999999999986532211 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
....+.++|++++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 55 ----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 55 ----------------------LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred ----------------------ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 001234458888889999999999999999999999999998 99999999999874
No 71
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.26 E-value=6.3e-11 Score=106.81 Aligned_cols=102 Identities=49% Similarity=0.852 Sum_probs=87.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
...+++++++.++.+.+.+.+++.+||+|+.. .+++++|+|+++|+.....+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE-ESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCC-CCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 67889999999999999999899999998720 01799999999999754211
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
+|.+++.++++++++.+++++|.+.+.+++||+++ |+++|+||++|++++
T Consensus 56 -----------------------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~-~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 56 -----------------------------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE-GRLVGIITRKDLLKA 105 (105)
T ss_pred -----------------------------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEEC-CeEEEEEEhhhhhcC
Confidence 37777889999999999999999999999999964 999999999999763
No 72
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.26 E-value=4.6e-11 Score=108.46 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=92.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.+.+.+++.+||+|++ ++++|+++..++.+.+.... ..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~----~~~~G~v~~~~i~~~~~~~~--~~~-------------------- 57 (114)
T cd04604 4 LPLVSPDTSLKDALLEMSRKGLGMTAVVDED----GRLVGIFTDGDLRRALEKGL--DIL-------------------- 57 (114)
T ss_pred ccccCCCCcHHHHHHHHHhcCccEEEEEcCC----CCEEEEechHHHHHHHhccC--ccc--------------------
Confidence 6678899999999999988888999999986 79999999999988764322 000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
...+.++|++.+.++++++++.++.+.|++.+...+||+|++|+++|+||++|+++
T Consensus 58 -----------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 58 -----------------------TLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred -----------------------cCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 01244458888889999999999999999999999999998899999999999976
No 73
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=5.1e-11 Score=110.83 Aligned_cols=123 Identities=25% Similarity=0.340 Sum_probs=92.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+++.+.+||+|++ ++++|+++..|+++....+........ .
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~----~~~~Giv~~~dl~~~~~~~~~~~~~~~------------~----- 61 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDEK----GKLIGNISASDLKGLLLSPDDLLLYRT------------I----- 61 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEECCC----CcEEEEEEHHHhhhhhcCcchhhcccc------------h-----
Confidence 7889999999999999999899999999986 899999999999876532210000000 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
...++ . ....+....|.+++.++++++++.++.++|.+.+.+++||+|++++++|+||+.|+++
T Consensus 62 ---------~~~~~--~----~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 62 ---------TFKEL--S----EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred ---------hhhhh--h----hhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 00000 0 0001112236677889999999999999999999999999998899999999999975
No 74
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.25 E-value=8.2e-11 Score=106.25 Aligned_cols=108 Identities=28% Similarity=0.487 Sum_probs=91.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+....+. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~G~v~~~~l~~~~~~~~--~---------------------- 53 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRISSIVVVDD-----GRPLGIVTERDILRLLASGP--D---------------------- 53 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEeeC-----CEEEEEEeHHHHHHHHhcCC--C----------------------
Confidence 678899999999999999988999999986 68999999999987543221 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
....+.++|++++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 54 ----------------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 ----------------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred ----------------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 011234458888899999999999999999999999999998899999999999975
No 75
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.25 E-value=6.4e-11 Score=108.70 Aligned_cols=119 Identities=20% Similarity=0.340 Sum_probs=93.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++.++.++.+.|.+.+++.+||+|+ ++++|++++.|+........ ....
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~i~~~~l~~~~~~~~--~~~~------------------- 56 (122)
T cd04585 3 PITVTPDTSLMEALKLMKENSIRRLPVVDR-----GKLVGIVTDRDLKLASPSKA--TTLD------------------- 56 (122)
T ss_pred CEEeCCCCcHHHHHHHHHhCCcceeeEecC-----CeEEEEEeHHHHHHhhhccc--cccc-------------------
Confidence 678899999999999999999999999987 68999999999987543211 0000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
..+... .....++.++|++++.++++++++.++++.|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 57 ----------~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 57 ----------IWELYY----LLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ----------chhhhh----hhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 000000 00123456678888999999999999999999999999999998899999999999986
No 76
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.24 E-value=7.2e-11 Score=107.65 Aligned_cols=109 Identities=17% Similarity=0.306 Sum_probs=87.5
Q ss_pred eEEecCcccHHHHHHHHhhCC-CCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNK-HNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~-~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (772)
+.++++++++.++.+.+.+++ +..+||+|+ ++++|+++..|+.+.+..+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~v~~~dl~~~~~~~~-~~--------------------- 55 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDSSCVLVVEK-----GRLLGIFTERDIVRLTAIGK-DL--------------------- 55 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCCceEEEcCC-----CcEEEEEeHHHHHHHHhcCC-Cc---------------------
Confidence 677899999999999998777 666777764 78999999999987553221 00
Q ss_pred cccccCCCCCCcccccCCcccccccccccccccCCCceecCC--CCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhh
Q 004131 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPED--MSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL 751 (772)
Q Consensus 674 ~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~--~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DL 751 (772)
. ...+.++|.+++.+++++ +++.+++++|.+.+...+||+|++|+++|+||++|+
T Consensus 56 ------------~-----------~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl 112 (115)
T cd04620 56 ------------S-----------DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESI 112 (115)
T ss_pred ------------c-----------ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHh
Confidence 0 012344577778888887 789999999999999999999988999999999999
Q ss_pred hh
Q 004131 752 LI 753 (772)
Q Consensus 752 l~ 753 (772)
++
T Consensus 113 ~~ 114 (115)
T cd04620 113 RQ 114 (115)
T ss_pred hc
Confidence 86
No 77
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.24 E-value=6.1e-11 Score=108.20 Aligned_cols=108 Identities=21% Similarity=0.325 Sum_probs=87.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+.+++.+||+|+. +++++++|+++.+|+.... . .
T Consensus 4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~~~~G~v~~~dl~~~~-~-~------------------------- 55 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDG-KSGGKLLGIVTSRDIDFLT-D-S------------------------- 55 (114)
T ss_pred CeEcCCCCCHHHHHHHHHHcCCCceEEeeCC-CcCCEEEEEEEhHHhhhhh-c-c-------------------------
Confidence 6788899999999999998888899999861 0027999999999986421 0 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecC--CCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE--DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~--~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl 752 (772)
..+++++|.+.+.++.. ++++.++++.|++.+.+++||+|++|+++|+||++|++
T Consensus 56 -----------------------~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~ 112 (114)
T cd04602 56 -----------------------ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112 (114)
T ss_pred -----------------------CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence 01234457777777766 99999999999999999999999889999999999987
Q ss_pred h
Q 004131 753 I 753 (772)
Q Consensus 753 ~ 753 (772)
+
T Consensus 113 ~ 113 (114)
T cd04602 113 K 113 (114)
T ss_pred c
Confidence 5
No 78
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.24 E-value=8.6e-11 Score=106.14 Aligned_cols=108 Identities=22% Similarity=0.462 Sum_probs=90.9
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+.+.+.+||+|+ ++++|++++.|+.+...... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~v~~~dl~~~~~~~~--~---------------------- 53 (111)
T cd04612 3 VVTVPVDLTVDEVLALMFGERHRGYPVVDD-----GRLVGIVTLADIRRVPAEGR--E---------------------- 53 (111)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcceEeeC-----CeEEEEEEHHHHHHHHhcCc--c----------------------
Confidence 678899999999999999888899999987 68999999999986543211 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
.+ .++...|.+++.++.+++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 54 -----------~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 54 -----------AT-----------VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred -----------cc-----------cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 00 1233447888899999999999999999999999999998899999999999976
No 79
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.24 E-value=6.9e-11 Score=134.93 Aligned_cols=146 Identities=21% Similarity=0.184 Sum_probs=111.4
Q ss_pred CcchHHHHHHhhCCCCCCC-CchhhhhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEe
Q 004131 557 SEGLYEEQAHLRGVPLLES-RPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGL 635 (772)
Q Consensus 557 ~~~iy~~~l~~kg~p~L~~-~~~~~l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGi 635 (772)
+.-.++.+++.+++-..+. .....++.++++|+|.++ +.++++++++.++.+.|.+++++.+||+|++ ++++|+
T Consensus 307 ~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~-~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~----~~~~Gi 381 (454)
T TIGR01137 307 TKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPA-PVTVHPTETVGDAIEILREYGFDQLPVVTEA----GKVLGS 381 (454)
T ss_pred CcccChHHHHhcCCcccccccHHHHhccCCHHHhCcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcCC----CeEEEE
Confidence 4444556666666422111 123457889999999998 9999999999999999999999999999976 799999
Q ss_pred eeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCC
Q 004131 636 VLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPED 715 (772)
Q Consensus 636 Itr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~ 715 (772)
|+.+|+.+.+..+. . . . ..++.++|++++.+++++
T Consensus 382 vt~~dl~~~~~~~~-~--~--------------------------~----------------~~~v~~im~~~~~~v~~~ 416 (454)
T TIGR01137 382 VTLRELLSALFAGK-A--N--------------------------P----------------DDAVSKVMSKKFIQIGEG 416 (454)
T ss_pred EEHHHHHHHHhccC-C--C--------------------------c----------------CCCHHHhcCCCCeEECCc
Confidence 99999987553321 0 0 0 012344588888899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHh
Q 004131 716 MSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (772)
Q Consensus 716 ~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (772)
+++.++.++|.+.+ .+||+++|+++|+||++|+++++
T Consensus 417 ~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 417 EKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 99999999998864 35555569999999999999875
No 80
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=7.7e-11 Score=109.79 Aligned_cols=124 Identities=15% Similarity=0.255 Sum_probs=94.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+++|+...+.... .......
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~----~~~~G~it~~dl~~~~~~~~-~~~~~~~----------------- 60 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVVDDN----GKLTGIVTRHDIVDFVVRDR-DKARTGD----------------- 60 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEECCC----CcEEEEEEHHHHHHHHhhhh-hhcchhh-----------------
Confidence 6778999999999999999999999999986 79999999999987653221 0000000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEec--CCCeEEEEEeHhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP--RASRVIGLITRKDLL 752 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd--~~g~lvGIITr~DLl 752 (772)
...+ .+.....+++++|++++.++++++++.+++++|.+.+.+.+||++ ++|+++|+||++|++
T Consensus 61 ---------~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 61 ---------RSGE-----KERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred ---------hhhh-----hhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence 0000 000011235567888899999999999999999999999999984 469999999999998
Q ss_pred hH
Q 004131 753 IE 754 (772)
Q Consensus 753 ~~ 754 (772)
++
T Consensus 127 ~~ 128 (128)
T cd04632 127 RA 128 (128)
T ss_pred cC
Confidence 64
No 81
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=6.1e-11 Score=106.06 Aligned_cols=102 Identities=12% Similarity=0.290 Sum_probs=87.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+..... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~Giv~~~~l~~~~~--~------------------------- 50 (105)
T cd04599 3 PITIDPLDSVGRAARLMEKHRIGGLPVVED-----GKLVGIITSRDVRRAHP--N------------------------- 50 (105)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-----CEEEEEEehHHhhcccc--c-------------------------
Confidence 677899999999999999888899999984 78999999999964210 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
..+.++|++++.++++++++.++++.|.+.+.+++||+|+ |+++|+||++|++.
T Consensus 51 ------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 51 ------------------------RLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred ------------------------CCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 0134458888999999999999999999999999999998 99999999999973
No 82
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.23 E-value=1.1e-10 Score=105.67 Aligned_cols=108 Identities=19% Similarity=0.344 Sum_probs=90.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++.+++++.+.+.+.+++.+||+|+ ++++|+++.+++...+.... ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-----~~~~G~v~~~~l~~~~~~~~-~~---------------------- 54 (111)
T cd04800 3 PVTCSPDTTIREAARLMTEHRVSSLLVVDD-----GRLVGIVTDRDLRNRVVAEG-LD---------------------- 54 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEEEC-----CEEEEEEEhHHHHHHHhccC-CC----------------------
Confidence 678899999999999998888899999986 68999999999986432211 00
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
...++.++|++++.++++++++.++++.|.+.+.+++||+|+ |+++|++|++|+++
T Consensus 55 ----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 55 ----------------------PDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred ----------------------ccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 002244558888999999999999999999999999999998 99999999999975
No 83
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=1.2e-10 Score=105.75 Aligned_cols=110 Identities=19% Similarity=0.317 Sum_probs=90.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+++++.+||+|+ ++++|++++.|+...+..+. ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~i~~~~l~~~~~~~~-----~~------------------ 54 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVCEN-----DRLVGIVTDRDIVVRAVAEG-----RD------------------ 54 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-----CEEEEEEEhHHHHHHHhhcc-----CC------------------
Confidence 678899999999999999999999999986 68999999999863211110 00
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
....++.++|++.+.++.+++++.++.+.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 55 ---------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 55 ---------------------PDTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred ---------------------cccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 0001244558888899999999999999999999999999998899999999999975
No 84
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=8e-11 Score=108.55 Aligned_cols=120 Identities=19% Similarity=0.292 Sum_probs=94.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+++++++++++++.+.+.+++++.+||+|+ ++++|+++.+++.+.+.... .....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~v~~~~l~~~~~~~~--~~~~~------------------ 57 (122)
T cd04637 3 VVTVEMDDRLEEVREIFEKHKFHHLLVVED-----NELVGVISDRDYLKAISPFL--GTAGE------------------ 57 (122)
T ss_pred ceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-----CeEEEEEEHHHHHHHHHHHh--ccccc------------------
Confidence 678899999999999999999999999986 68999999999987654211 00000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
...+. .....++.++|+++++++++++++.++.+.|.+.+.+.+||+|++|+++|++|++|++++
T Consensus 58 ---------~~~~~------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 58 ---------TEKDL------ATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred ---------hHHHH------HHHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 00000 001124566788999999999999999999999999999999988999999999999864
No 85
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=8.4e-11 Score=111.17 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=94.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++.++.++.+.|.+.+++.+||+|++ ++++|+|+..|+.+.+.... ...... ..+ . +
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~----~~~~Giv~~~dl~~~~~~~~-~~~~~~--~~~--------~---~ 64 (135)
T cd04621 3 IATVHPEHSLLHVVDEMEKNGVGRVIVVDDN----GKPVGVITYRDLAFAEFEDN-ERGLPK--KSI--------K---M 64 (135)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCcceEECCC----CCEEEEEeHHHHHHHhhccc-ccccch--hhh--------h---h
Confidence 6778999999999999999999999999986 89999999999988654221 000000 000 0 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
...... . .+.. ......+++++|.+++..+.+++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 65 ~~~~~~---~-~~~~----~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 65 KRKAGQ---K-RYRY----VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred hhhccc---c-cccc----cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 000000 0 0000 000123456678888889999999999999999999999999998 99999999999976
No 86
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.22 E-value=5.6e-11 Score=107.16 Aligned_cols=105 Identities=20% Similarity=0.313 Sum_probs=87.8
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++.++++.++.+.+.+++++.+||+|++ ++++|+++.+++.... . .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~----~~~~G~v~~~~l~~~~---~-----~------------------- 52 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGISGLPVVDDD----GKLVGIVTNRDLRFET---D-----L------------------- 52 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCCceEEEEcCC----CEEEEEEEhhHeeecc---c-----C-------------------
Confidence 6788999999999999998999999999986 8999999999885310 0 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecC-CCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE-DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~-~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
...+.++|++.+..+.+ ++++.+++++|.+.+.+.+||+|++|+++|+||++|+++
T Consensus 53 -----------------------~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 -----------------------DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred -----------------------CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 01234457777777777 999999999999999999999998899999999999975
No 87
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.22 E-value=1.3e-10 Score=105.07 Aligned_cols=108 Identities=27% Similarity=0.410 Sum_probs=89.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++.+++++.+.|.+.+++.+||+|++ +++++|+++..|+.+...+.. ..
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~---~~~~~G~v~~~~l~~~~~~~~--~~--------------------- 56 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDGD---LDNIIGVVHVKDLLRALAEGE--ED--------------------- 56 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECCC---CceEEEEEEHHHHHHHHHcCC--Cc---------------------
Confidence 7889999999999999998889999999874 168999999999988653221 00
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
..+..+| +++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 57 ------------------------~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 ------------------------LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred ------------------------CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 0122234 45678999999999999999999999999999899999999999975
No 88
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.22 E-value=1.2e-10 Score=105.70 Aligned_cols=110 Identities=16% Similarity=0.300 Sum_probs=90.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++++++++.+.|.+++.+.+||+|+ ++++|+|+..|+...+.... ...
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~G~v~~~dl~~~~~~~~-~~~--------------------- 55 (113)
T cd04587 3 PATVSPTTTVQEAAKLMREKRVSCVLVMDG-----NKLVGIFTSKDIALRVVAQG-LDP--------------------- 55 (113)
T ss_pred CeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-----CEEEEEEEhHHHHHHHHhcC-CCc---------------------
Confidence 678899999999999998888889999986 68999999999975332111 000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
...++.++|++++.++++++++.++++.|.+.+.+++||+|++++++|+||++|++.
T Consensus 56 ----------------------~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 56 ----------------------ESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred ----------------------CcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 001244558888899999999999999999999999999998899999999999975
No 89
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=6.2e-11 Score=110.36 Aligned_cols=116 Identities=17% Similarity=0.245 Sum_probs=87.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++++.|.+.+.+.+||+|++ ++++|+++..|+......+........
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~----~~~~Giv~~~dl~~~~~~~~~~~~~~~------------------ 60 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGVRLLLVVDSD----DNFIGVITAVDLLGEEPIKRIQEGGIS------------------ 60 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEEcCC----CcEEEEEEHHHHhhChhhHHHHHcCCC------------------
Confidence 6788999999999999998888999999976 789999999999752110000000000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCcee------cCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEe
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVV------PEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLIT 747 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V------~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIIT 747 (772)
....+++++|++++..+ .+++++.++++.|.+.+.+++||+|++ |+++|+||
T Consensus 61 ---------------------~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it 119 (126)
T cd04640 61 ---------------------RSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIIS 119 (126)
T ss_pred ---------------------chheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEe
Confidence 00112344576655443 368999999999999999999999987 79999999
Q ss_pred Hhhhhh
Q 004131 748 RKDLLI 753 (772)
Q Consensus 748 r~DLl~ 753 (772)
++|+++
T Consensus 120 ~~di~~ 125 (126)
T cd04640 120 TSDIAR 125 (126)
T ss_pred HHHHhh
Confidence 999976
No 90
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.20 E-value=1.9e-10 Score=104.14 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=90.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+++++++++++++.+.|.+.+++.+||+|+ ++++|+++.+++...+.... ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~v~~~~l~~~~~~~~-~~---------------------- 54 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRDG-----DPRLGIVTRTDLLDAVLLDG-LP---------------------- 54 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEecC-----CeEEEEEEHHHHHHHHHcCC-CC----------------------
Confidence 678899999999999999888889999986 57899999999987543221 00
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
...++.++|++++.++++++++.+++++|.+.+.+.+||+|+ |+++|+||++|++++
T Consensus 55 ----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~~ 111 (111)
T cd04589 55 ----------------------SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLSF 111 (111)
T ss_pred ----------------------CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhcC
Confidence 011234458888899999999999999999999999999987 999999999999763
No 91
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.20 E-value=1.6e-10 Score=104.10 Aligned_cols=108 Identities=25% Similarity=0.344 Sum_probs=88.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+++++.+||+|+ ++++|+++..|+.+.+.... ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~G~v~~~dl~~~~~~~~--~~--------------------- 54 (110)
T cd04609 3 VVSVAPDDTVSQAIERMREYGVSQLPVVDD-----GRVVGSIDESDLLDALIEGK--AK--------------------- 54 (110)
T ss_pred cEEECCCCcHHHHHHHHHHcCCceeeEeeC-----CeeEEEEeHHHHHHHHhccc--cc---------------------
Confidence 678899999999999999999999999986 68999999999988653321 00
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
...++.++|++++.++++++++.++.++|.+ . ..+||+|++|+++|+||++|+++|
T Consensus 55 ----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 55 ----------------------FSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred ----------------------cCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhcC
Confidence 0012344588888899999999999999998 3 458899888999999999999874
No 92
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.19 E-value=1.5e-10 Score=127.67 Aligned_cols=186 Identities=25% Similarity=0.267 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc--ccCCCHH
Q 004131 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPA--AAGSGIP 151 (772)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~--a~GsGip 151 (772)
..+.+.+++|+++|+++.+|.....++++++.+.. +.....++ ..++.+++.+. ..++.|+ ..|.|-.
T Consensus 162 ~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~~~~~~l----~~~i~gl~~g~-l~~~~p~~~~~g~G~~ 231 (355)
T PF00654_consen 162 WELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-----RLKIPPIL----RPVIGGLVIGL-LAFFFPEGSVLGSGYE 231 (355)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCHHHHH----HHHHHHHHHHH-HHHSSGG-SGSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccccchHH----HHHHHHHHHHH-HHHHHhhhcccCCcHH
Confidence 34557889999999999999999998886554331 00011111 22233444443 4456688 9999998
Q ss_pred HHHHHHcccc--ccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCC---h
Q 004131 152 EIKGYLNGVD--IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRS---D 226 (772)
Q Consensus 152 ev~~~l~g~~--~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~---~ 226 (772)
.++..+++.. ..-....-..+.|++.+.+++++|.+.|...|++-+|+++|..++.. +..+-+ .
T Consensus 232 ~i~~ll~~~~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~-----------~~~~~~~~~~ 300 (355)
T PF00654_consen 232 LIQSLLSGSPPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGAL-----------LGSFFPGISS 300 (355)
T ss_dssp HHHHHCTT----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHH-----------HHHH-GGG-T
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHH-----------HHhhCCCcCC
Confidence 9999887631 11122233578999999999999999999999999999999999873 221111 1
Q ss_pred hhhhhHHHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHH
Q 004131 227 RDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVR 283 (772)
Q Consensus 227 ~~~r~li~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~ 283 (772)
.+...+..+||+|.++++.|+|++.+++.+|++.+ .+...+.++++++|..+.+
T Consensus 301 ~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~---~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 301 VDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGD---FQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp -SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHhC
Confidence 14678999999999999999999999999999985 3455666666666666544
No 93
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.19 E-value=9.1e-11 Score=134.15 Aligned_cols=117 Identities=18% Similarity=0.293 Sum_probs=101.4
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCC
Q 004131 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGS 664 (772)
Q Consensus 585 ~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~ 664 (772)
.++|+|.++ ++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.... . .
T Consensus 88 ~~~dim~~~-~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~----g~lvGiVt~~DL~~~~---~-----~--------- 145 (486)
T PRK05567 88 RSESGVVTD-PVTVTPDTTLAEALALMARYGISGVPVVDEN----GKLVGIITNRDVRFET---D-----L--------- 145 (486)
T ss_pred hhhhcccCC-CeEeCCCCCHHHHHHHHHHhCCCEEEEEccC----CEEEEEEEHHHhhhcc---c-----C---------
Confidence 578899998 9999999999999999999999999999976 8999999999995310 0 0
Q ss_pred CCccccccccccccCCCCCCcccccCCccccccccccccccc-CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 004131 665 KPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (772)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~-~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lv 743 (772)
..+++++|+ +++.++++++++.++.+.|.+.+.+.+||+|++|+++
T Consensus 146 ---------------------------------~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lv 192 (486)
T PRK05567 146 ---------------------------------SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLK 192 (486)
T ss_pred ---------------------------------CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEE
Confidence 012344587 6788999999999999999999999999999999999
Q ss_pred EEEeHhhhhhHhc
Q 004131 744 GLITRKDLLIEDG 756 (772)
Q Consensus 744 GIITr~DLl~~~~ 756 (772)
|+||++|+++...
T Consensus 193 GiIT~~DLl~~~~ 205 (486)
T PRK05567 193 GLITVKDIEKAEE 205 (486)
T ss_pred EEEEhHHhhhhhh
Confidence 9999999998754
No 94
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=1.7e-10 Score=103.52 Aligned_cols=104 Identities=23% Similarity=0.422 Sum_probs=88.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+++++.+.++.++.+.+.+.+.+.+||+|+ ++++|+++..||... ..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----~~~~g~v~~~~l~~~---~~------------------------- 50 (107)
T cd04610 4 VITVSPDNTVKDVIKLIKETGHDGFPVVDN-----GKVVGIVSARDLLGK---DP------------------------- 50 (107)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeeeEeEC-----CEEEEEEEHHHhhcc---Cc-------------------------
Confidence 778899999999999998888889999985 689999999998631 00
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
..++.++|++.+.++.+++++.++++.|.+.+.+.+||+|++|+++|+||++|++++
T Consensus 51 -----------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~~ 107 (107)
T cd04610 51 -----------------------DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIRS 107 (107)
T ss_pred -----------------------cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhcC
Confidence 012444588888999999999999999999999999999998999999999999863
No 95
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.19 E-value=2.3e-10 Score=102.59 Aligned_cols=111 Identities=26% Similarity=0.441 Sum_probs=93.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++.++++.++.+.+.+.+++.+||+|++ ++++|+++++|+...+.+.. ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~G~v~~~~l~~~~~~~~--~~~-------------------- 56 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGISGLPVVDDD----GRLVGIVTERDLLRALAEGG--LDP-------------------- 56 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCCceEEEECCC----CCEEEEEeHHHHHHHHHhcc--CCc--------------------
Confidence 6778999999999999999888999999986 79999999999987654322 000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
...+.++|..++.++++++++.++++.|.+.+.+++||+|++++++|++|++|++++
T Consensus 57 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~~ 113 (113)
T cd02205 57 -----------------------LVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILRA 113 (113)
T ss_pred -----------------------cccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhcC
Confidence 001344577888899999999999999999999999999999999999999999763
No 96
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=1.7e-10 Score=106.17 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=92.9
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+++...+.... ..+..
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-----~~~~G~v~~~~l~~~~~~~~--~~~~~------------------ 57 (121)
T cd04633 3 VITVSPDDRVSHARRLMLDHDISRLPVIEG-----GKLVGIVTEKDIADALRSFR--PLVRD------------------ 57 (121)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeeEEEEC-----CEEEEEEchHHHHHhhhhhh--hcccc------------------
Confidence 678899999999999999889999999986 68999999999987644221 00000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
... +......++.++|++++.++++++++.+++++|.+.+.+++||+|+ |+++|+||++|++++
T Consensus 58 -----------~~~----~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 58 -----------RHQ----ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred -----------hhh----hhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 000 0000112355568888999999999999999999999999999998 999999999999864
No 97
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.18 E-value=3.2e-10 Score=103.40 Aligned_cols=113 Identities=19% Similarity=0.341 Sum_probs=95.7
Q ss_pred hhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCc
Q 004131 588 EACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPI 667 (772)
Q Consensus 588 diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~ 667 (772)
++|.++ ++++.++.++.++.+.|.+++...+||++. .+++|+++.+|+.+.+.... ..
T Consensus 3 ~~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-----~~l~Giit~~di~~~~~~~~-----~~----------- 60 (117)
T COG0517 3 DIMTKD-VITVKPDTSVRDALLLMSENGVSAVPVVDD-----GKLVGIITERDILRALAAGG-----KR----------- 60 (117)
T ss_pred ccccCC-CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-----CEEEEEEEHHHHHHHHhccC-----Cc-----------
Confidence 445566 899999999999999999999999999987 48999999999998765432 00
Q ss_pred cccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHH-cCCCEEEEecCCC-eEEEE
Q 004131 668 SHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQ-LGLRHIFVVPRAS-RVIGL 745 (772)
Q Consensus 668 ~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~-~glr~lpVVd~~g-~lvGI 745 (772)
. ..+.++|.+++.++.+++++.++.+.|.+ .+.+++||+|+++ +++|+
T Consensus 61 ----------------~--------------~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGi 110 (117)
T COG0517 61 ----------------L--------------LPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGI 110 (117)
T ss_pred ----------------c--------------ccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEE
Confidence 0 02444588888999999999999999999 6999999999986 99999
Q ss_pred EeHhhhh
Q 004131 746 ITRKDLL 752 (772)
Q Consensus 746 ITr~DLl 752 (772)
+|++|++
T Consensus 111 vt~~di~ 117 (117)
T COG0517 111 ITLSDIL 117 (117)
T ss_pred EEHHHcC
Confidence 9999974
No 98
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.18 E-value=1.2e-10 Score=132.55 Aligned_cols=116 Identities=11% Similarity=0.133 Sum_probs=97.1
Q ss_pred ccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccc
Q 004131 590 CGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISH 669 (772)
Q Consensus 590 M~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 669 (772)
|.++ ++++++++|+.++.+.|.+++++.+||+|++. .+++++|+|+.+|+.... . .
T Consensus 106 mi~d-pvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~-~~GklvGIVT~~DL~~v~---~-----~-------------- 161 (505)
T PLN02274 106 FVSD-PVVKSPSSTISSLDELKASRGFSSVCVTETGT-MGSKLLGYVTKRDWDFVN---D-----R-------------- 161 (505)
T ss_pred ccCC-CeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC-cCCeEEEEEEHHHHhhcc---c-----c--------------
Confidence 6677 89999999999999999999999999998620 127999999999996421 0 0
Q ss_pred cccccccccCCCCCCcccccCCcccccccccccccccCC--CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEe
Q 004131 670 SFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLIT 747 (772)
Q Consensus 670 ~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~--p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIIT 747 (772)
..+++++|++. ..++++++++.+++++|.+.+.+.+||+|++++++|+||
T Consensus 162 ----------------------------~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvIT 213 (505)
T PLN02274 162 ----------------------------ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVT 213 (505)
T ss_pred ----------------------------CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEE
Confidence 01244458766 679999999999999999999999999998899999999
Q ss_pred HhhhhhHhcC
Q 004131 748 RKDLLIEDGE 757 (772)
Q Consensus 748 r~DLl~~~~~ 757 (772)
++|+++....
T Consensus 214 r~DIlk~~~~ 223 (505)
T PLN02274 214 RTDVKRVKGY 223 (505)
T ss_pred HHHHHHHhhC
Confidence 9999998764
No 99
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=3e-10 Score=102.92 Aligned_cols=110 Identities=17% Similarity=0.296 Sum_probs=87.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++.+.+.+++...++|.++ ++++|+++.+|+.+.+.... .+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~v~~~dl~~~~~~~~---~~~------------------- 55 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVMER-----GELVGLLTFREVLQAMAQHG---AGV------------------- 55 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEeeC-----CEEEEEEEHHHHHHHHHhcC---Cch-------------------
Confidence 678899999999999998777777766654 79999999999987543210 000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
....+.++|++.+.++++++++++++++|.+.+.+.+||+|+ |+++|+||++|++++
T Consensus 56 ----------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 56 ----------------------LDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG-GTLLGVISFHDVAKA 112 (112)
T ss_pred ----------------------hcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC-CEEEEEEEHHHhhcC
Confidence 001234458888889999999999999999999999999996 999999999999863
No 100
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.18 E-value=1.1e-10 Score=132.00 Aligned_cols=122 Identities=18% Similarity=0.327 Sum_probs=102.3
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCC
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~ 662 (772)
-.+.++.|.++ ++++++++++.++.+.|.+++++.+||+|++. +.++++|+|+.+|+.... . .
T Consensus 79 Vk~~~~~~~~~-~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~-~~~~lvGIVt~rDL~~~~---~-----~------- 141 (450)
T TIGR01302 79 VKRAENGIISD-PVTISPETTVADVLELMERKGISGIPVVEDGD-MTGKLVGIITKRDIRFVK---D-----K------- 141 (450)
T ss_pred hccccCceecC-ceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEHHHHhhhh---c-----C-------
Confidence 34667889888 99999999999999999999999999998741 114899999999996421 0 0
Q ss_pred CCCCccccccccccccCCCCCCcccccCCccccccccccccccc-CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 004131 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (772)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~-~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~ 741 (772)
..+++++|+ +++.++++++++.+++++|++.+.+++||+|++|+
T Consensus 142 -----------------------------------~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~ 186 (450)
T TIGR01302 142 -----------------------------------GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGE 186 (450)
T ss_pred -----------------------------------CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCc
Confidence 012445588 48899999999999999999999999999999999
Q ss_pred EEEEEeHhhhhhHhc
Q 004131 742 VIGLITRKDLLIEDG 756 (772)
Q Consensus 742 lvGIITr~DLl~~~~ 756 (772)
++|+||++|+++...
T Consensus 187 lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 187 LVGLITMKDIVKRRK 201 (450)
T ss_pred EEEEEEhHHhhhccc
Confidence 999999999998764
No 101
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=1.2e-10 Score=105.34 Aligned_cols=102 Identities=23% Similarity=0.294 Sum_probs=84.9
Q ss_pred ecCcccHHHHHHHHhhCC-----CCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccc
Q 004131 598 LPRIIKVADVVSILRTNK-----HNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFS 672 (772)
Q Consensus 598 v~~~~tv~~~~~~L~~~~-----~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (772)
+++++++.++.+.|.+++ +..+||+|++ ++++|+|+.+++... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~----~~~~G~v~~~~l~~~---~~----------------------- 51 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE----GRLLGVVSLRDLLLA---DP----------------------- 51 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC----CCEEEEEEHHHHhcC---CC-----------------------
Confidence 467889999999998776 3689999876 789999999988531 00
Q ss_pred ccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhh
Q 004131 673 EFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752 (772)
Q Consensus 673 ~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl 752 (772)
..++.++|++++.++++++++.++++.|.+.+.+++||+|++|+++|+||++|++
T Consensus 52 -------------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll 106 (109)
T cd04606 52 -------------------------DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVI 106 (109)
T ss_pred -------------------------cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhh
Confidence 0123445778889999999999999999999999999999889999999999998
Q ss_pred hH
Q 004131 753 IE 754 (772)
Q Consensus 753 ~~ 754 (772)
++
T Consensus 107 ~~ 108 (109)
T cd04606 107 DV 108 (109)
T ss_pred hh
Confidence 75
No 102
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.16 E-value=5.4e-10 Score=126.45 Aligned_cols=197 Identities=17% Similarity=0.099 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHH
Q 004131 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (772)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (772)
..+.+.+++|+++|+++.+|+....++++++.+.. ...+.++.. .+.+++.+.+ .++.|+..|+|-..+
T Consensus 205 ~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~-------~~~~~~~~~---~l~~l~~~~l-~~~~p~~~~~g~~~i 273 (445)
T cd03684 205 FELIPFILLGIFGGLYGAFFIKANIKWARFRKKSL-------LKRYPVLEV---LLVALITALI-SFPNPYTRLDMTELL 273 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchhHHHHH---HHHHHHHHHH-HhChHHHccchhhHH
Confidence 34557899999999999999999988877654331 000111111 2233333433 456799999997777
Q ss_pred HHHHccccc---------------cC-c----hhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCcccc
Q 004131 154 KGYLNGVDI---------------HG-I----LLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKY 213 (772)
Q Consensus 154 ~~~l~g~~~---------------~~-~----l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~ 213 (772)
+..+++... .. . .-.-.++.|++.+.+++++|.+.|...|+.-+||++|..++...+...
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~ 353 (445)
T cd03684 274 ELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLA 353 (445)
T ss_pred HHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHH
Confidence 776654210 00 1 112346899999999999999999999999999999999987321100
Q ss_pred chhhhhhcccC------ChhhhhhHHHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHh
Q 004131 214 HLRYRWLQVFR------SDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSA 285 (772)
Q Consensus 214 ~l~~~~~~~f~------~~~~~r~li~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~ 285 (772)
... .-..+|. ...+.-.++.+||||-++++.|+|++++++++|++.+ ...+.+.++++.+|..+.+.+
T Consensus 354 ~~~-p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~---~~~l~pl~ia~~iA~~vs~~~ 427 (445)
T cd03684 354 YSY-PDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGA---LNYILPLMIAVMVSKWVADAI 427 (445)
T ss_pred hhC-CcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCC---cccHHHHHHHHHHHHHHHHHh
Confidence 000 0000010 1123467899999999999999999999999999985 356677777777777777643
No 103
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.16 E-value=2.4e-10 Score=128.98 Aligned_cols=181 Identities=23% Similarity=0.220 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHH
Q 004131 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGY 156 (772)
Q Consensus 77 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~ 156 (772)
...+++|++.|+++.++........+++. ....+..+.. .+.++++ .+...+.|+..|.|...++..
T Consensus 236 ~~~~~lGii~G~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~---~~~g~l~-g~~~l~~P~~lg~G~~~~~~~ 302 (443)
T COG0038 236 LLYLVLGIIAGLFGVLLSRLLALSRRFFR---------RLPLPPLLRP---ALGGLLV-GALGLLFPEVLGNGYGLIQLA 302 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCcchHHHHH---HHHHHHH-HHHHHhchhhhCCCccHHHHH
Confidence 36688999999999888877754422221 1111112222 1223333 344567799999999888888
Q ss_pred HccccccCch-hHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccC-ChhhhhhHHH
Q 004131 157 LNGVDIHGIL-LFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFR-SDRDRRDLVT 234 (772)
Q Consensus 157 l~g~~~~~~l-~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~-~~~~~r~li~ 234 (772)
.++.-. .. ..-.++.|++.+.+|++||.+.|...|++.+|+++|..+++.... .+. +..+.-.++.
T Consensus 303 ~~~~~~--~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~----------~~~~~~~~~~~~al 370 (443)
T COG0038 303 LAGEGG--LLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGL----------LFPPSILEPGLFAL 370 (443)
T ss_pred HccCcc--HHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHh----------hcCccccchHHHHH
Confidence 876321 22 355689999999999999999999999999999999999873211 111 1234458999
Q ss_pred hhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHh
Q 004131 235 CGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSA 285 (772)
Q Consensus 235 ~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~ 285 (772)
+||+|.++++-|+|++++++++|++.+ .++....+.+|.+++.+.+..
T Consensus 371 ~Gm~a~la~~~~aPlta~vlv~EmTg~---~~~~l~ll~a~~ia~~~~~~~ 418 (443)
T COG0038 371 LGMAAFLAATTRAPLTAIVLVLEMTGN---YQLLLPLLIACLIAYLVSRLL 418 (443)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHhCC---cchHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999987 456777788888888877654
No 104
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.16 E-value=2e-10 Score=134.00 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=115.2
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCC--
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR-- 661 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~-- 661 (772)
.+++|+|+++ ++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|+.+.+.+.... .........
T Consensus 68 ~~V~dim~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----g~l~Givt~~di~~~~~~~~~~-~~~~~~~~t~~ 141 (546)
T PRK14869 68 PQVRDLEIDK-PVTVSPDTSLKEAWNLMDENNVKTLPVVDEE----GKLLGLVSLSDLARAYMDILDP-EILSKSPTSLE 141 (546)
T ss_pred CcHHHhcCCC-CcEECCCCcHHHHHHHHHHcCCCEEEEEcCC----CEEEEEEEHHHHHHHHHhhcch-hhhhhcCCCHH
Confidence 6899999998 9999999999999999999999999999986 8999999999999866543200 000000000
Q ss_pred ------C-----CCCCc---cccc----------ccccccc-----CC-------------------CCCCcc-------
Q 004131 662 ------G-----GSKPI---SHSF----------SEFVKPA-----SS-------------------KGLSID------- 686 (772)
Q Consensus 662 ------~-----~~~~~---~~~~----------~~~~~~~-----~~-------------------~~~~v~------- 686 (772)
+ +..+. ..++ ..+..+. .+ .+.++.
T Consensus 142 ~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la 221 (546)
T PRK14869 142 NIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELA 221 (546)
T ss_pred HHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 0 00000 0000 0000000 00 000000
Q ss_pred ------------cccCCccccccccccccccc-CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 687 ------------DIHLSSDDMEMYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 687 ------------di~~~~~~~~~~idl~~~m~-~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
|..-+........+++++|+ +++.+++++++++++.+.|.+.+.+++||+|++|+++|+||++|+++
T Consensus 222 ~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~ 301 (546)
T PRK14869 222 KENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301 (546)
T ss_pred HhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhc
Confidence 00001112334577889999 89999999999999999999999999999999899999999999998
Q ss_pred HhcC
Q 004131 754 EDGE 757 (772)
Q Consensus 754 ~~~~ 757 (772)
...+
T Consensus 302 ~~~~ 305 (546)
T PRK14869 302 PVRK 305 (546)
T ss_pred cccC
Confidence 7654
No 105
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.16 E-value=5e-10 Score=101.44 Aligned_cols=109 Identities=17% Similarity=0.368 Sum_probs=89.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++.++.++.+.|.+.+++.+||+|+ ++++|+++..|+...+.... ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~G~v~~~dl~~~~~~~~-~~~--------------------- 55 (112)
T cd04802 3 VITVDPDTTVYEAANIMTENNIGRLIVVDN-----EKPVGIITERDLVKKVVSRN-LKP--------------------- 55 (112)
T ss_pred cEEECCCCCHHHHHHHHHHCCCCEEEEEEC-----CEEEEEEEHHHHHHHHhhcc-CCc---------------------
Confidence 678899999999999999989999999986 58999999999987543221 000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
....+.++|++++.++++++++.++++.|.+.+.+.+||+|+ ++++|+||++|+++
T Consensus 56 ----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~di~~ 111 (112)
T cd04802 56 ----------------------REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-DELVGIVTTTDIVM 111 (112)
T ss_pred ----------------------ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-CEEEEEEEhhhhhc
Confidence 011234458888889999999999999999999999999998 49999999999975
No 106
>PRK11573 hypothetical protein; Provisional
Probab=99.15 E-value=2.4e-10 Score=127.78 Aligned_cols=133 Identities=20% Similarity=0.186 Sum_probs=108.6
Q ss_pred hhccchhhhccC-CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCC
Q 004131 581 MRQMTAKEACGA-QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (772)
Q Consensus 581 l~~l~v~diM~~-~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~ 659 (772)
+++.+|+|+|++ .++++++.+.+++++.+.+.+++|+.+||.+++. +..+|+|..+|++..+.++. +
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~---D~IiGiv~~kDll~~~~~~~-----~---- 251 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSL---DDAISMLRVREAYRLMTEKK-----E---- 251 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCC---CceEEEEEHHHHHHHhhccC-----c----
Confidence 568899999987 2399999999999999999999999999998643 67999999999986532211 0
Q ss_pred CCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 004131 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (772)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~ 739 (772)
... .++.+++ ++|+.|++++++.++++.|++.+.+...|+|+.
T Consensus 252 -----------------------~~~-------------~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy 294 (413)
T PRK11573 252 -----------------------FTK-------------ENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY 294 (413)
T ss_pred -----------------------CCH-------------HHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC
Confidence 000 0122233 567899999999999999999999999999999
Q ss_pred CeEEEEEeHhhhhhHhcCCCccc
Q 004131 740 SRVIGLITRKDLLIEDGEDSTTV 762 (772)
Q Consensus 740 g~lvGIITr~DLl~~~~~~~~~~ 762 (772)
|...|+||.+|+++.+.++..++
T Consensus 295 G~~~GiVTleDilEeivGei~de 317 (413)
T PRK11573 295 GDIQGLVTVEDILEEIVGDFTTS 317 (413)
T ss_pred CCeEEEeeHHHHHHHHhCCCCcc
Confidence 99999999999999998877554
No 107
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.15 E-value=1.3e-10 Score=132.34 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=100.5
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCC
Q 004131 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGS 664 (772)
Q Consensus 585 ~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~ 664 (772)
++++.|..+ ++++++++++.++.++|++++++.+||+|++. .+++++|+|+.+|+... .. .
T Consensus 97 ~~e~g~i~d-pvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~-~~gkLvGIVt~~DL~~~---~~-----~--------- 157 (495)
T PTZ00314 97 RFENGFIMD-PYVLSPNHTVADVLEIKEKKGFSSILITVDGK-VGGKLLGIVTSRDIDFV---KD-----K--------- 157 (495)
T ss_pred ccccccccC-CeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc-cCCeEEEEEEHHHHhhc---cc-----C---------
Confidence 366788888 89999999999999999999999999998731 12789999999998621 00 0
Q ss_pred CCccccccccccccCCCCCCcccccCCcccccccccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 004131 665 KPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (772)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~l 742 (772)
..+++++|++ ++.++++++++.++.++|.+++.+.+||+|+++++
T Consensus 158 ---------------------------------~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~l 204 (495)
T PTZ00314 158 ---------------------------------STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGEL 204 (495)
T ss_pred ---------------------------------CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcE
Confidence 1224455877 78899999999999999999999999999999999
Q ss_pred EEEEeHhhhhhHhc
Q 004131 743 IGLITRKDLLIEDG 756 (772)
Q Consensus 743 vGIITr~DLl~~~~ 756 (772)
+|+||++|+++...
T Consensus 205 iGIIT~~DIl~~~~ 218 (495)
T PTZ00314 205 VALVSRSDLKKNRG 218 (495)
T ss_pred EEEEEehHhhhccc
Confidence 99999999998754
No 108
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.15 E-value=1.9e-10 Score=122.01 Aligned_cols=115 Identities=14% Similarity=0.220 Sum_probs=96.3
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCC
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~ 662 (772)
.++++|+|.++++.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+.+|+.+.+.... .
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~----g~~~Givt~~dl~~~~~~~~----~-------- 217 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN----NQLVGVFTDGDLRRALLGGG----S-------- 217 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC----CCEEEEEEcHHHHHHHhcCC----c--------
Confidence 5799999975326788999999999999999999999999976 89999999999987543211 0
Q ss_pred CCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 004131 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (772)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~l 742 (772)
...+++++|.+++.++++++++.+++++|.+.+.+++||+|++|++
T Consensus 218 ----------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l 263 (268)
T TIGR00393 218 ----------------------------------LKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKV 263 (268)
T ss_pred ----------------------------------ccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeE
Confidence 0012445588888999999999999999999999999999998999
Q ss_pred EEEEe
Q 004131 743 IGLIT 747 (772)
Q Consensus 743 vGIIT 747 (772)
+|+|+
T Consensus 264 ~GvI~ 268 (268)
T TIGR00393 264 LGVLH 268 (268)
T ss_pred EEEEC
Confidence 99985
No 109
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.15 E-value=3e-10 Score=104.39 Aligned_cols=118 Identities=20% Similarity=0.314 Sum_probs=92.9
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.+++++.++.++.+.+.+++++.+||+|++ ++++|+++.+++........ .....
T Consensus 3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~----~~~~G~v~~~~l~~~~~~~~--~~~~~------------------ 58 (121)
T cd04584 3 VVTITPTTTIAEALELMREHKIRHLPVVDEE----GRLVGIVTDRDLRDASPSPF--TTLSE------------------ 58 (121)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCcccEECCC----CcEEEEEEHHHHHHHhhhhc--ccchh------------------
Confidence 6788999999999999999999999999986 89999999999976432211 00000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
.+. ......+++++|++.+.++++++++.++++.|.+.+..++||+|+ |+++|++|++|+++
T Consensus 59 -----------~~~-----~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 59 -----------HEL-----YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred -----------hhh-----hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 000 000123355668888999999999999999999999999999998 99999999999976
No 110
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.15 E-value=3.9e-10 Score=101.07 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=85.7
Q ss_pred EEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccccc
Q 004131 596 VSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFV 675 (772)
Q Consensus 596 v~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (772)
+++++++++.++.+.+.+.+++.+||+|+ ++++|+++.+|+.+...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~G~v~~~~l~~~~~----------------------------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-----NKFLGAVYLKDIENATY----------------------------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-----CEEEEEEEHHHHhhhcc-----------------------------
Confidence 56889999999999999999999999986 68999999999864210
Q ss_pred cccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 676 KPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 676 ~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
.++.++|.+.+.++++++++.++++.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 50 -----------------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~iGvit~~dl~~ 103 (104)
T cd04594 50 -----------------------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-GKFKGIVTLDSILD 103 (104)
T ss_pred -----------------------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC-CEEEEEEEHHHhhc
Confidence 0122347778899999999999999999999999999985 99999999999975
No 111
>PRK03655 putative ion channel protein; Provisional
Probab=99.13 E-value=6.8e-10 Score=123.98 Aligned_cols=172 Identities=12% Similarity=0.069 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHH
Q 004131 75 KWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIK 154 (772)
Q Consensus 75 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~ 154 (772)
.|.+.+++|++.|+++.+|.......+++.... . .+++ . ..+++++.+.+.....|...|+|..+++
T Consensus 222 ~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~-----~----~p~~-~---~~lgGl~vg~l~l~~~~~~~g~Gy~~i~ 288 (414)
T PRK03655 222 DILSGAIVAAIAIAAGMVAVWCLPRLHALMHRL-----K----NPVL-V---LGIGGFILGILGVIGGPLTLFKGLDEMQ 288 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c----cchH-H---HHHHHHHHHHHHHHhCCccccCCHHHHH
Confidence 455778889999999999987776655433211 1 1111 1 1234455555555556888999999999
Q ss_pred HHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHH
Q 004131 155 GYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVT 234 (772)
Q Consensus 155 ~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~ 234 (772)
..+++.+.+-..-.-..+.|++.+.+|+++|.++|...|+..+||++|..+++. + ++.+....++
T Consensus 289 ~~~~~~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l-----------~----p~~~~~~~v~ 353 (414)
T PRK03655 289 QMAANQAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH-----------V----PAVPAAITVS 353 (414)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh-----------c----cCCChHHHHH
Confidence 888663222111122467999999999999999999999999999999999872 1 2344577889
Q ss_pred hhhhhhhhhhhc----CCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHH
Q 004131 235 CGCAAGVAAAFR----APVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVV 282 (772)
Q Consensus 235 ~GaaAgvaaaF~----APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~ 282 (772)
++|+|.++++-+ +|+++++.++|++ ..+.+.++++++++.
T Consensus 354 ~~m~a~la~vtr~p~~sp~ta~viv~em~--------~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 354 CAILGIVLVVTRDGWLSLFMAAVVVPDTT--------LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHhcch--------HHHHHHHHHHHHHHH
Confidence 999999999999 6999999999997 334555566665543
No 112
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=6.4e-10 Score=106.12 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=95.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
++++++++++.++.+.|.+++++.+||+|+ ++++|++++.|+.+.+.... ........ +..+.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-----~~~~G~v~~~dl~~~~~~~~-~~~~~~~~----------~~~~~~ 66 (143)
T cd04634 3 PITCNADDTISDAARLLRENKISGAPVLDG-----GKLVGIVSESDILKLLVTHD-PSGNLWLP----------SPLELI 66 (143)
T ss_pred cEEecCCCCHHHHHHHHHHcCCCcceEeEC-----CeEEEEecHHHHHHHHHhcc-CccccccC----------Ccceee
Confidence 778999999999999999999999999986 68999999999988764322 00000000 000000
Q ss_pred ccccCCCCCCcccc-cCCc----ccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHh
Q 004131 675 VKPASSKGLSIDDI-HLSS----DDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRK 749 (772)
Q Consensus 675 ~~~~~~~~~~v~di-~~~~----~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~ 749 (772)
..++.++ ...+ .+.....++.++|++.+.++++++++.++++.|.+.+.+++||+|+ |+++|+||++
T Consensus 67 -------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~ 138 (143)
T cd04634 67 -------ELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRG 138 (143)
T ss_pred -------eccchheeehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHH
Confidence 0001110 0000 0000124566778889999999999999999999999999999998 9999999999
Q ss_pred hhhh
Q 004131 750 DLLI 753 (772)
Q Consensus 750 DLl~ 753 (772)
|+++
T Consensus 139 dl~~ 142 (143)
T cd04634 139 DIIE 142 (143)
T ss_pred Hhhc
Confidence 9974
No 113
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.10 E-value=3.5e-10 Score=124.39 Aligned_cols=127 Identities=14% Similarity=0.169 Sum_probs=109.0
Q ss_pred hhhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCC
Q 004131 580 KMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (772)
Q Consensus 580 ~l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~ 659 (772)
.+-..++.++|+.+ ++++++..++.++.+.|.+.+.+..-++|++ +.+.|+||++|+....-.+. +
T Consensus 145 e~~~trv~~~~~~~-~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~----~~~~GIvT~~dl~~~v~~~g-----~---- 210 (610)
T COG2905 145 EFILTRVGEVKTLP-AVTVSPQASIQDAARKMKDEGVSSLVVLDDS----GPLLGIVTRKDLRSRVIADG-----R---- 210 (610)
T ss_pred hHHHHHHHHHhcCC-CcccCccCcHHHHHHHHHhcCCCeEEEEcCC----CCccceeehHHHHHHHHhcC-----C----
Confidence 34456789999998 9999999999999999999999988888876 78999999999987643322 0
Q ss_pred CCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 004131 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (772)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~ 739 (772)
.....+.++|+.++++|..++.+.+|+-+|.+++++|+||+++
T Consensus 211 ------------------------------------~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~- 253 (610)
T COG2905 211 ------------------------------------SKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED- 253 (610)
T ss_pred ------------------------------------CcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC-
Confidence 0123456669999999999999999999999999999999988
Q ss_pred CeEEEEEeHhhhhhHhcC
Q 004131 740 SRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 740 g~lvGIITr~DLl~~~~~ 757 (772)
|+++||||.+||++....
T Consensus 254 gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 254 GQPLGILTLTDILRLFSQ 271 (610)
T ss_pred CeeeEEeeHHHHHHhhCC
Confidence 999999999999998764
No 114
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.09 E-value=8.7e-10 Score=98.97 Aligned_cols=103 Identities=24% Similarity=0.382 Sum_probs=87.5
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++.+++++.++.+.+.+.+++.+||+|++ ++++|+++++++... .. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~g~v~~~~l~~~---~~-----~------------------- 51 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKS----GELVGIITRKDLLRN---PE-----E------------------- 51 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcCC----CcEEEEEEHHHHHhc---cc-----c-------------------
Confidence 6788889999999999999899999999876 789999999998641 00 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
.++.++|++.+.++++++++.++.+.|++.+.+.+||+|+ |+++|+||++|+++
T Consensus 52 ------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 52 ------------------------EQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred ------------------------chHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 0133457788889999999999999999999999999996 89999999999875
No 115
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.09 E-value=7.3e-10 Score=101.55 Aligned_cols=112 Identities=24% Similarity=0.374 Sum_probs=88.3
Q ss_pred eEEecCcccHHHHHHHHhhCC-CCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNK-HNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSE 673 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~-~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (772)
+.++++++++.++.+.++..+ ++.+||+|+ ++++|+++.+|+.+.+.... ....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-----~~~~G~v~~~~l~~~~~~~~--~~~~------------------ 57 (119)
T cd04598 3 APTVSPDTTVNDVLERFERDPDLSALAVVDD-----GRPVGLIMREALMELLSTPY--GRAL------------------ 57 (119)
T ss_pred cCccCCCCcHHHHHHHHHhCCCccEEEEEEC-----CeeEEEEEHHHHHHHHhchh--hHHH------------------
Confidence 567889999999999998876 889999987 68999999999987543211 0000
Q ss_pred cccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEE---EEecCCCeEEEEEeHhh
Q 004131 674 FVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHI---FVVPRASRVIGLITRKD 750 (772)
Q Consensus 674 ~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~l---pVVd~~g~lvGIITr~D 750 (772)
....++.++|++++.++.+++++.++++.|.+.+.+++ +|+|++|+++|+||++|
T Consensus 58 ----------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~d 115 (119)
T cd04598 58 ----------------------YGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKD 115 (119)
T ss_pred ----------------------HcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHH
Confidence 00113455688899999999999999999999986544 68888899999999999
Q ss_pred hhh
Q 004131 751 LLI 753 (772)
Q Consensus 751 Ll~ 753 (772)
+++
T Consensus 116 i~~ 118 (119)
T cd04598 116 LLR 118 (119)
T ss_pred Hhc
Confidence 975
No 116
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.03 E-value=1.8e-09 Score=121.77 Aligned_cols=130 Identities=26% Similarity=0.350 Sum_probs=108.2
Q ss_pred hhccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCC
Q 004131 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 581 l~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~ 658 (772)
+++.+|+++|++ + +..++.+.++.++.+.+.+++|+.+||.+++ .+.++|++..+|++..+.+... ..
T Consensus 203 l~~~~v~eiMtPR~~-i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~---~D~iiGiv~~Kdll~~~~~~~~---~~--- 272 (429)
T COG1253 203 LDDRTVREIMTPRTD-IVALDLTDTVEELIELILESGHSRIPVYDGD---LDNIIGIVHVKDLLRALLDGQS---DL--- 272 (429)
T ss_pred cCCcEeeeEeeeccc-EEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC---CCcEEEEEEHHHHHHHHhcCcc---cc---
Confidence 568899999987 5 8999999999999999999999999999943 2689999999999886544320 00
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~ 738 (772)
+.+..+ ++|..|++++++.++++.|++.+.+...|+|+
T Consensus 273 -----------------------------------------~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE 310 (429)
T COG1253 273 -----------------------------------------DLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDE 310 (429)
T ss_pred -----------------------------------------chhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc
Confidence 000112 27789999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhhHhcCCCccc
Q 004131 739 ASRVIGLITRKDLLIEDGEDSTTV 762 (772)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~~ 762 (772)
.|.+.|+||..|+++.+.++..++
T Consensus 311 yG~~~GlVTleDIiEeIvGei~de 334 (429)
T COG1253 311 YGGVEGLVTLEDIIEEIVGEIPDE 334 (429)
T ss_pred CCCeEEEeEHHHHHHHHhCCCcCc
Confidence 999999999999999998876544
No 117
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.99 E-value=6.6e-10 Score=123.60 Aligned_cols=125 Identities=24% Similarity=0.271 Sum_probs=106.6
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhC-----CCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCC
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTN-----KHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~-----~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~ 657 (772)
.-+++.+|+.+ .++++++.|++++++.+++. ....++|+|++ ++++|+++.++++.. + +
T Consensus 131 e~taG~~Mt~e-~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~----~~L~Gvvsl~~Ll~a---~-----~--- 194 (451)
T COG2239 131 EDTAGRIMTTE-FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK----GKLLGVVSLRDLLTA---E-----P--- 194 (451)
T ss_pred hhhhhccceee-eEEeccCcCHHHHHHHHHHhcccccccceEEEECCc----cceEEEeeHHHHhcC---C-----c---
Confidence 45889999999 99999999999999999854 35678899987 899999999998631 0 0
Q ss_pred CCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEec
Q 004131 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (772)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd 737 (772)
...++++|++.+.+|++++..+++.++|+++++-++||||
T Consensus 195 ----------------------------------------~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd 234 (451)
T COG2239 195 ----------------------------------------DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD 234 (451)
T ss_pred ----------------------------------------HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence 0124445999999999999999999999999999999999
Q ss_pred CCCeEEEEEeHhhhhhHhcCCCcccc
Q 004131 738 RASRVIGLITRKDLLIEDGEDSTTVE 763 (772)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~~~~~~~ 763 (772)
++|+++|+||..|+++.+.++.+++-
T Consensus 235 ~~~~LiG~itiDDiidvi~eEa~eDi 260 (451)
T COG2239 235 EDNRLIGIITIDDIIDVIEEEATEDI 260 (451)
T ss_pred CCCceeeeeeHHHHHHHHHHHHHHHH
Confidence 99999999999999999888766543
No 118
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=98.99 E-value=3.4e-09 Score=120.60 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHH
Q 004131 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (772)
Q Consensus 73 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (772)
+..+.+.+++|+++|+++.+|+....++++++... ... . ....+....+.+.+.+++. + +
T Consensus 274 ~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~-----~~~--~-~~~~~l~~~lv~~~~~~~~-~----------~- 333 (466)
T cd03685 274 YFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRI-----NHK--G-KLLKVLEALLVSLVTSVVA-F----------P- 333 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccc--c-chhHHHHHHHHHHHHHHHH-H----------H-
Confidence 34456789999999999999999998887654322 000 0 1111122222222322221 1 0
Q ss_pred HHHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhH
Q 004131 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (772)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~l 232 (772)
....-.++.|++.+.+++++|.++|...|+.-+||++|..++..... ++.. ...+.-.+
T Consensus 334 ------------~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~~~--~~~~~~~~ 392 (466)
T cd03685 334 ------------QTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGS-------YFGF--TSIDPGLY 392 (466)
T ss_pred ------------HHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHH-------Hccc--cCCCchHH
Confidence 01123457899999999999999999999999999999999873211 1111 23345679
Q ss_pred HHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 004131 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (772)
Q Consensus 233 i~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (772)
+.+||||-++++.|+|++++++.+|++.+ ...+.+.++++++|..+.+.
T Consensus 393 aliGmaa~lag~~raPlt~iviv~ElTg~---~~~l~pl~ia~~iA~~va~~ 441 (466)
T cd03685 393 ALLGAAAFLGGVMRMTVSLTVILLELTNN---LTYLPPIMLVLMIAKWVGDY 441 (466)
T ss_pred HHHHHHHHHhHHhhhhHHHHHHhhhhcCC---hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 45667777777777777664
No 119
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.96 E-value=1.7e-09 Score=113.72 Aligned_cols=130 Identities=25% Similarity=0.325 Sum_probs=110.1
Q ss_pred hhccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCC
Q 004131 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 581 l~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~ 658 (772)
+++++|+|+|.+ + +..++.+++.+++++.+.++.|+.+||-.++. +..+|++..+|+++++.++..|..
T Consensus 197 Le~~tV~DIMvpR~~-i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~---DnIiGvlh~r~llr~l~e~~~~~k----- 267 (423)
T COG4536 197 LENLTVSDIMVPRNE-IIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL---DNIIGVLHVRDLLRLLNEKNEFTK----- 267 (423)
T ss_pred cccceeeeeeccccc-eeeecCCCCHHHHHHHHhhCCCCceeeecCCh---hHhhhhhhHHHHHHHhhccCcccH-----
Confidence 578999999986 5 88999999999999999999999999997753 569999999999998866541110
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~ 738 (772)
.|+.. .-.+|+.|++.+++.+-+..|++.+-|.-.|||+
T Consensus 268 ----------------------------------------~d~~~-~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE 306 (423)
T COG4536 268 ----------------------------------------EDILR-AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE 306 (423)
T ss_pred ----------------------------------------hHHHH-HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEec
Confidence 11111 2357899999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhhHhcCCCc
Q 004131 739 ASRVIGLITRKDLLIEDGEDST 760 (772)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~ 760 (772)
.|.+.|+||.+|+++.+-++..
T Consensus 307 YG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 307 YGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred cCcEEeeeeHHHHHHHHhcccc
Confidence 9999999999999999887765
No 120
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=98.91 E-value=1.7e-08 Score=113.59 Aligned_cols=174 Identities=18% Similarity=0.111 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHH
Q 004131 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (772)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (772)
..+.+.+++|+++|+++.+|+....++++++.+.... .....++ ..+.+.+++.+.+. +
T Consensus 234 ~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~i~~~~~-~------------- 292 (416)
T cd01036 234 YEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFR---KTARYRV----LEPVLFTLIYSTIH-Y------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccchhH----HHHHHHHHHHHHHH-H-------------
Confidence 3455788999999999999999998887665432110 0011111 12223333333322 1
Q ss_pred HHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcc--cCChhhhhh
Q 004131 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQV--FRSDRDRRD 231 (772)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~--f~~~~~~r~ 231 (772)
.. .-.-.++.|++.+.+++++|.+.|...|++-+||++|..++...+..++- -.++ .....+...
T Consensus 293 ~~----------~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~~~~~~~~---~~~~~~~~~~~~~~~ 359 (416)
T cd01036 293 AP----------TLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVA---GIGAESATLWADPGV 359 (416)
T ss_pred HH----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHccc---cccccccCCccChHH
Confidence 00 11335789999999999999999999999999999999998732111100 0000 001234568
Q ss_pred HHHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 004131 232 LVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (772)
Q Consensus 232 li~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (772)
++.+||||-++++.|+|++++++.+|++.+ .....+.++++.+|..+.+.
T Consensus 360 ~alvGmaa~l~~~~r~Plt~~vi~~ElTg~---~~~l~pl~ia~~ia~~v~~~ 409 (416)
T cd01036 360 YALIGAAAFLGGTTRLTFSICVIMMELTGD---LHHLLPLMVAILIAKAVADA 409 (416)
T ss_pred HHHHHHHHHhhhhhcchHhhhhheeeccCC---hhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999976 45566666766666666553
No 121
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.86 E-value=4.5e-09 Score=83.41 Aligned_cols=55 Identities=31% Similarity=0.553 Sum_probs=51.7
Q ss_pred cccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 702 GPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 702 ~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
+++|++++.++++++++.++.+.|++.+.+++||+|++|+++|+||++||++++.
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 4569999999999999999999999999999999999999999999999998864
No 122
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.79 E-value=3.2e-08 Score=93.38 Aligned_cols=116 Identities=11% Similarity=0.143 Sum_probs=79.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
+.++++++++.++++.|.+++.+.+||+|++ ++++|+|+..|+++.+.... ........+..
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~----g~l~Givt~~Dl~~~~~~~~-~~~~~~~~~~~------------- 64 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDSD----DFLEGILTLGDIQRFLFTNK-TTRVQPEDETK------------- 64 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEECCC----CeEEEEEEHHHHHHHHhhcc-ccccccchhhc-------------
Confidence 7889999999999999998999999999986 89999999999998764332 10000000000
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~ 739 (772)
..+...+.++ .....+.+.|.+++.++++++++.+|+++|.+++.+++||+|++
T Consensus 65 ----~~~~~~v~~i-------~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 65 ----QTNTCLVSSV-------CTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred ----ccccccHHHH-------hhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 0000000111 00000112245678899999999999999999999999999875
No 123
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.78 E-value=1.4e-08 Score=100.13 Aligned_cols=130 Identities=22% Similarity=0.358 Sum_probs=108.5
Q ss_pred hhccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCC
Q 004131 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 581 l~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~ 658 (772)
...++|+|+|.+ . .++++.+.++.+++..+.++.|+.|||+.++ ...+.|++..+||++.+.... .
T Consensus 64 iadl~vrDiMIPRSQ-M~~l~~~~~l~~~l~~iiesaHSRfPVi~ed---kD~v~GIL~AKDLL~~~~~~~-----~--- 131 (293)
T COG4535 64 IADLRVRDIMIPRSQ-MITLKRNQTLDECLDVIIESAHSRFPVISED---KDHVEGILLAKDLLPFMRSDA-----E--- 131 (293)
T ss_pred HHHhhHhhhcccHHH-heeccccCCHHHHHHHHHHhccccCCcccCC---chhhhhhhhHHHHHHHhcCCc-----c---
Confidence 457899999986 4 8899999999999999999999999999875 267999999999998754332 0
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~ 738 (772)
..|++++ -++...|++.-.+.+.++-||....+...|+|+
T Consensus 132 ---------------------------------------~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIViDE 171 (293)
T COG4535 132 ---------------------------------------PFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE 171 (293)
T ss_pred ---------------------------------------cccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEEec
Confidence 1223332 355578999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhhHhcCCCccc
Q 004131 739 ASRVIGLITRKDLLIEDGEDSTTV 762 (772)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~~ 762 (772)
-|-+.|.||..|+++.+-++++++
T Consensus 172 fGgVsGLVTIEDiLEqIVGdIEDE 195 (293)
T COG4535 172 FGGVSGLVTIEDILEQIVGDIEDE 195 (293)
T ss_pred cCCeeeeEEHHHHHHHHhcccccc
Confidence 999999999999999998777654
No 124
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=98.74 E-value=1.2e-07 Score=106.86 Aligned_cols=177 Identities=16% Similarity=0.117 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHH
Q 004131 74 VKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (772)
Q Consensus 74 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (772)
..|...+++|+++|+++.+|+....++++++.+... ...-.....+ ....+.+++.+.+. .| .
T Consensus 230 ~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~~---l~~~~~g~~~~~l~---~p---------~ 292 (426)
T cd03683 230 QELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRL--FSKFLKRSPL---LYPAIVALLTAVLT---FP---------F 292 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhcccchH---HHHHHHHHHHHHHH---HH---------H
Confidence 445678999999999999999998888776433210 0000000111 11222333333221 13 0
Q ss_pred HHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHH
Q 004131 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLV 233 (772)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li 233 (772)
....-.++.|++.+.+++++|.++|...|+.-+||++|..++......++.. +........+.-.++
T Consensus 293 -----------~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~~g~~~~~~~p~~--~~~~~~~~~~~~~~a 359 (426)
T cd03683 293 -----------LTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEG--IRGGISNPIGPGGYA 359 (426)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHHHHHHHHHHcCcc--cccCCCCCcCchHHH
Confidence 1123357899999999999999999999999999999999876321111000 000000123456799
Q ss_pred HhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 004131 234 TCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (772)
Q Consensus 234 ~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (772)
.+||||-++++.|+|.+.+ +.+|++.+ ...+.+.++++++|..+.+.
T Consensus 360 lvGmaa~~a~~~ra~~t~v-lv~E~Tg~---~~~llpl~ia~~ia~~v~~~ 406 (426)
T cd03683 360 VVGAAAFSGAVTHTVSVAV-IIFELTGQ---ISHLLPVLIAVLISNAVAQF 406 (426)
T ss_pred HHHHHHHHHHHHhHHHHHh-eeeeecCC---cchHHHHHHHHHHHHHHHHh
Confidence 9999999999999999875 89999976 34566777777776666553
No 125
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.55 E-value=1.7e-07 Score=74.25 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=52.6
Q ss_pred hhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHh
Q 004131 586 AKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQ 646 (772)
Q Consensus 586 v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~ 646 (772)
|+|+|+++ +.++++++++.++.+.|++++++.+||+|++ ++++|+|+++||++.+.
T Consensus 1 v~~~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~----~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPP-PITVSPDDSLEEALEIMRKNGISRLPVVDED----GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSS-SEEEETTSBHHHHHHHHHHHTSSEEEEESTT----SBEEEEEEHHHHHHHHH
T ss_pred CeECCcCC-CEEEcCcCcHHHHHHHHHHcCCcEEEEEecC----CEEEEEEEHHHHHhhhh
Confidence 68999998 9999999999999999999999999999987 89999999999998763
No 126
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.48 E-value=7.3e-07 Score=98.38 Aligned_cols=125 Identities=16% Similarity=0.275 Sum_probs=97.9
Q ss_pred CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccc
Q 004131 593 QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFS 672 (772)
Q Consensus 593 ~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (772)
+ +..+.+++++.++++.|.+.+.+++||||++ ++.+|.+++.|+..+..... +.......
T Consensus 238 ~-i~~i~~~~~v~~al~~m~~~~is~lpvV~~~----g~~v~~~s~~Dv~~l~~~~~-~~~~~~~~-------------- 297 (381)
T KOG1764|consen 238 N-IASISEDTPVIEALKIMSERRISALPVVDEN----GKKVGNYSRFDVIHLAREGT-YNNLDLSC-------------- 297 (381)
T ss_pred h-heeecCCCcHHHHHHHHHhcCcCcceEEcCC----CceecceehhhhhhhhhcCc-cCccchhH--------------
Confidence 5 7888999999999999999999999999987 67799999999988765543 22211100
Q ss_pred ccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhh
Q 004131 673 EFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752 (772)
Q Consensus 673 ~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl 752 (772)
+. +..+.++.-....+++.+++++.++++.+...+.+++.|||++|+++|+||..|++
T Consensus 298 ------------l~----------~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil 355 (381)
T KOG1764|consen 298 ------------LS----------EALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDIL 355 (381)
T ss_pred ------------HH----------HHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHH
Confidence 00 01111222222358999999999999999999999999999999999999999999
Q ss_pred hHhcCCC
Q 004131 753 IEDGEDS 759 (772)
Q Consensus 753 ~~~~~~~ 759 (772)
.++....
T Consensus 356 ~~l~~~p 362 (381)
T KOG1764|consen 356 SYLVLTP 362 (381)
T ss_pred HHHHhCc
Confidence 9987553
No 127
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.45 E-value=1.5e-06 Score=95.60 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=89.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
.....++.+..++.+.+...+.+...|+|++ +++.|.|+.+++...++...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~------------------------- 302 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQ----NKLVGVVDVESIKQARKKAQ------------------------- 302 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCC----CCEEEEEeHHHHHHHhhcCC-------------------------
Confidence 3445567788999999999999999999986 79999999999876543211
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
. +.+.+.+...++++++++.+++..+.+.+.. +||+|++|+++|+||+.++++.
T Consensus 303 ---------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~ 356 (363)
T TIGR01186 303 ---------G----------------LQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDA 356 (363)
T ss_pred ---------c----------------hhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHH
Confidence 1 1222566677899999999999999999999 9999999999999999999998
Q ss_pred hcCC
Q 004131 755 DGED 758 (772)
Q Consensus 755 ~~~~ 758 (772)
+.+.
T Consensus 357 ~~~~ 360 (363)
T TIGR01186 357 LYDS 360 (363)
T ss_pred HHhh
Confidence 8654
No 128
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.43 E-value=5.9e-07 Score=91.62 Aligned_cols=57 Identities=19% Similarity=0.404 Sum_probs=53.1
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHh
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (772)
++..++|.++.+++++++++.++.+++.+++++.+||+|++.|++||||++|+++..
T Consensus 245 LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a 301 (382)
T COG3448 245 LTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHA 301 (382)
T ss_pred ccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhcc
Confidence 456677999999999999999999999999999999999999999999999999843
No 129
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.43 E-value=1.4e-06 Score=96.97 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=93.9
Q ss_pred cchhhhccCCce--EEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCC
Q 004131 584 MTAKEACGAQKV--VSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (772)
Q Consensus 584 l~v~diM~~~~v--v~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~ 661 (772)
+++.++|.++.. +...++.+..++++.|.+.+.+..+|+|++ +++.|+|+.+++......+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~------------ 337 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG----NKFVGAVSIDSLKTALTQQQ------------ 337 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC----CcEEEEEeHHHHHhhhhcCC------------
Confidence 566777754301 123356788999999999999999999987 89999999999976432111
Q ss_pred CCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 004131 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (772)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~ 741 (772)
. +.+.+.+...+|++++++.+++..+.+.... +||||++|+
T Consensus 338 ----------------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 378 (400)
T PRK10070 338 ----------------------G----------------LDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQ 378 (400)
T ss_pred ----------------------c----------------hhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCc
Confidence 1 2223566677899999999999999997777 999999999
Q ss_pred EEEEEeHhhhhhHhcCC
Q 004131 742 VIGLITRKDLLIEDGED 758 (772)
Q Consensus 742 lvGIITr~DLl~~~~~~ 758 (772)
++|+||+.++++.+.++
T Consensus 379 ~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 379 YVGIISKGMLLRALDRE 395 (400)
T ss_pred EEEEEEHHHHHHHHHhc
Confidence 99999999999988643
No 130
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.30 E-value=1.4e-06 Score=92.59 Aligned_cols=110 Identities=14% Similarity=0.347 Sum_probs=92.3
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
++.+.|..++.++++.-..+.+.++||.++.. -..+|+|+|+.+|+-.+ +++.
T Consensus 118 p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~-~~~KLvG~vtsrdi~f~-~~~~------------------------- 170 (503)
T KOG2550|consen 118 PIVISPTTTVGEVKEAKEKHGFSGIPVTEDGK-RGSKLVGIITSRDIQFL-EDNS------------------------- 170 (503)
T ss_pred CcccCCcccchhhhhhcccccccccccccCCc-ccceeEEEEehhhhhhh-hccc-------------------------
Confidence 57789999999999999999999999997532 22689999999998643 1111
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
.. +.++|.+.+++.+.+.+++++-+++++.....+||||++|+++-+|+|.||.+.
T Consensus 171 --------~~----------------~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 171 --------LL----------------VSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred --------ch----------------hhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 12 334488888999999999999999999999999999999999999999999886
Q ss_pred h
Q 004131 755 D 755 (772)
Q Consensus 755 ~ 755 (772)
.
T Consensus 227 ~ 227 (503)
T KOG2550|consen 227 R 227 (503)
T ss_pred c
Confidence 4
No 131
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.97 E-value=1.2e-05 Score=73.28 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=50.1
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
..+.++|.+.+.++++++++.++++.|++.+.+.+||+|++|+++|+||++|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 3466679889999999999999999999999999999999899999999999864
No 132
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.89 E-value=5.8e-06 Score=96.73 Aligned_cols=142 Identities=18% Similarity=0.312 Sum_probs=99.1
Q ss_pred hccchhhhcc-CCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCC
Q 004131 582 RQMTAKEACG-AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (772)
Q Consensus 582 ~~l~v~diM~-~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~ 660 (772)
...+++++|+ ++ ++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+.....++....+.....
T Consensus 244 ~~~~V~~iM~~~~-~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~----g~lvGiit~~dl~~~~~~~~iLVD~~e~~-- 316 (546)
T PRK14869 244 QSIPVSYIMTTED-LVTFSKDDYLEDVKEVMLKSRYRSYPVVDED----GKVVGVISRYHLLSPVRKKVILVDHNEKS-- 316 (546)
T ss_pred cCCCHHHhccCCC-cEEECCCCcHHHHHHHHHhcCCCceEEEcCC----CCEEEEEEHHHhhccccCceEEEcCcccc--
Confidence 4678999999 78 9999999999999999999999999999986 89999999999987544322111111000
Q ss_pred CCCCCCccccccccccccCCCCCCcccccCCccccccccc---ccccccCCCcee---cCCCCHHHHHHHHHHcCCCEEE
Q 004131 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYID---LGPFLNPSPYVV---PEDMSLSKVYNLFRQLGLRHIF 734 (772)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~id---l~~~m~~~p~~V---~~~~sL~~a~~lf~~~glr~lp 734 (772)
+ ....+ .+.+....+| +..+|++.|+.+ +..++.+.+.++|++.+....|
T Consensus 317 --------q--------------~~~~~--~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~ 372 (546)
T PRK14869 317 --------Q--------------AVEGI--EEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSP 372 (546)
T ss_pred --------c--------------cccch--hhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCH
Confidence 0 00000 0000001111 233566666655 3466778899999999999888
Q ss_pred EecCCCeEEEEEeHhhhhhHh
Q 004131 735 VVPRASRVIGLITRKDLLIED 755 (772)
Q Consensus 735 VVd~~g~lvGIITr~DLl~~~ 755 (772)
++.. ..+.||+|-++.+++-
T Consensus 373 ~ia~-~ll~gIlsDT~~f~~~ 392 (546)
T PRK14869 373 EIAG-LLLAAILSDTLLFKSP 392 (546)
T ss_pred HHHH-HHHHHHHHHhcCccCC
Confidence 8866 6799999988888753
No 133
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.85 E-value=3.6e-05 Score=70.26 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=50.9
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
.+++|+|.++ +.++++++++.++++.|.++++..+||+|++ ++++|+|+.+||.+
T Consensus 58 ~~v~dim~~~-~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~----~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRK-PVTARPNDPLREALNLMHEHNIRTLPVVDDD----GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCC-CCEECCcCcHHHHHHHHHHcCCCEEEEECCC----CeEEEEEEHHHhhc
Confidence 6899999988 9999999999999999999999999999986 89999999999853
No 134
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.78 E-value=2.8e-05 Score=78.39 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=54.7
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcCC
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~ 758 (772)
..++++|.++++++.+++|++++.++|.++++|..||+|+ ++++|++|.+|+.+++.+-
T Consensus 172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g 230 (294)
T COG2524 172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANG 230 (294)
T ss_pred chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcC
Confidence 4577889999999999999999999999999999999999 5999999999999988763
No 135
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.77 E-value=2.5e-05 Score=88.85 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=89.8
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCC
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~ 663 (772)
.+++|+|+++ +.++++++++.++.+.|+++++..+||||++ ++++|+|+.+|+.+.+.++.
T Consensus 195 ~~v~~im~~~-~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~----g~lvGiIt~~Dil~~l~~~~-------------- 255 (449)
T TIGR00400 195 EILSSIMRSS-VFSIVGVNDQEEVARLIQKYDFLAVPVVDNE----GRLVGIVTVDDIIDVIQSEA-------------- 255 (449)
T ss_pred CcHHHHhCCC-CeeECCCCCHHHHHHHHHHcCCCEEeEEcCC----CeEEEEEEHHHHHHHHHhhh--------------
Confidence 4699999998 8999999999999999999999999999986 89999999999998765432
Q ss_pred CCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 004131 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (772)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lv 743 (772)
- +++|.....+..+++.+.++...+.+++..+++|. .+.
T Consensus 256 ---------------------~----------------ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~ 294 (449)
T TIGR00400 256 ---------------------T----------------EDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVS 294 (449)
T ss_pred ---------------------H----------------HHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHH
Confidence 0 12244444444567788888999999999999885 577
Q ss_pred EEEeHhhhhhHhc
Q 004131 744 GLITRKDLLIEDG 756 (772)
Q Consensus 744 GIITr~DLl~~~~ 756 (772)
|++| ..+++.+.
T Consensus 295 ~~~t-~~ii~~f~ 306 (449)
T TIGR00400 295 STFT-ATIISNYE 306 (449)
T ss_pred HHHH-HHHHHHHH
Confidence 8888 66666554
No 136
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.64 E-value=0.00012 Score=66.99 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=44.8
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
++.++++++++.++.+.|.+.+.+++||+|++|+++|++|++|+++...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHh
Confidence 3468899999999999999999999999998899999999999998654
No 137
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.00028 Score=79.40 Aligned_cols=172 Identities=22% Similarity=0.158 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHH
Q 004131 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGY 156 (772)
Q Consensus 77 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~ 156 (772)
+..+++|+..|+.+.++...-....+.+... ....+.. +.+ +++..+..++.+..|..+=.+...+...
T Consensus 310 ~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~----~lg~~pv---~ev----~~vt~iTaiIs~~np~~r~~~~e~i~~L 378 (696)
T KOG0475|consen 310 LPFILLGIFGGLWGAFFIRLNIRFCRFRKSS----KLGKFPV---LEV----VFVTLVTAIISLFNPETRFNMSELITIL 378 (696)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHhccchh----hccCCcc---hhH----HHHHHHHHHHHhcCHHHHhhHHHHHHHH
Confidence 4568889999999998887766665554332 0111211 111 2222333455677888777775556666
Q ss_pred Hccccc------cC-------chhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccc-hhhhhhcc
Q 004131 157 LNGVDI------HG-------ILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYH-LRYRWLQV 222 (772)
Q Consensus 157 l~g~~~------~~-------~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~-l~~~~~~~ 222 (772)
+|.... +. .+-...++.|++.++++.|++.|.|..-|+..+||+.|-.+|-..-+.+. -+|..+.
T Consensus 379 f~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg- 457 (696)
T KOG0475|consen 379 FNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFG- 457 (696)
T ss_pred HhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccccc-
Confidence 554321 11 12344578999999999999999999999999999999988742111110 0111110
Q ss_pred cCChhhhhhHHHhhhhhhhhhhhcCCccceeeeeeecch
Q 004131 223 FRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTS 261 (772)
Q Consensus 223 f~~~~~~r~li~~GaaAgvaaaF~APigGvlFalE~~~~ 261 (772)
.+-.-.......||||-++++-|-|++-|+.-+|.+..
T Consensus 458 -~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~ 495 (696)
T KOG0475|consen 458 -LSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGA 495 (696)
T ss_pred -hhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCc
Confidence 01123456788999999999999999999999999876
No 138
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.61 E-value=0.00014 Score=53.97 Aligned_cols=47 Identities=30% Similarity=0.566 Sum_probs=42.7
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHh
Q 004131 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (772)
Q Consensus 709 p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (772)
+.++.+++++.++.+.|++.+.+++||+|++++++|+++++|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 35788999999999999999999999999889999999999998754
No 139
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.61 E-value=0.00011 Score=65.10 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=43.0
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHh
Q 004131 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIED 755 (772)
Q Consensus 709 p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~ 755 (772)
+.++++++++.++.++|.+.+.+++||+|++ |+++|+||++|+.+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe
Confidence 4689999999999999999999999999975 8999999999998754
No 140
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.57 E-value=6.4e-05 Score=70.41 Aligned_cols=61 Identities=28% Similarity=0.374 Sum_probs=55.7
Q ss_pred cccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcCCC
Q 004131 698 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 698 ~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~~ 759 (772)
.+..+.+|+++.+.|++++++.++.++|++.|...+||+++ |+++|-||..|+.+...+..
T Consensus 64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM 124 (187)
T ss_pred eEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc
Confidence 45566779999999999999999999999999999999999 99999999999999886653
No 141
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.54 E-value=0.00013 Score=65.85 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=50.4
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
.+++++|..+ +.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++
T Consensus 56 ~~v~~~~~~~-~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~----~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVP-VPIVYCDSKVTDLLRIFRETEPPVVAVVDKE----GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecC-CcEECCCCcHHHHHHHHHHcCCCeEEEEcCC----CeEEEEEEhHHhhc
Confidence 4688999888 8899999999999999999999999999976 89999999999864
No 142
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.51 E-value=0.00023 Score=67.00 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=45.7
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
++.++++++++.++.+.|.+.+..++||+|++|+++|+||.+|++++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence 45789999999999999999999999999998999999999999987653
No 143
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.48 E-value=0.00025 Score=62.49 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=43.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|++|.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence 45789999999999999999999999999988999999999999874
No 144
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.45 E-value=0.00021 Score=64.82 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=51.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
..+++++|.++ +.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+.+
T Consensus 58 ~~~v~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTRA-VVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN----ARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcCC-CeeECCCCCHHHHHHHHHHcCCCeEEEECCC----CcEEEEEEhHhhcc
Confidence 35788999988 8999999999999999999999999999976 78999999999863
No 145
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.40 E-value=0.0004 Score=64.34 Aligned_cols=51 Identities=18% Similarity=0.399 Sum_probs=45.7
Q ss_pred CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 707 ~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
+++.++++++++.++.+.|++.+.+++||+|++++++|+||.+|+++...+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHH
Confidence 356789999999999999999999999999998999999999999975543
No 146
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.34 E-value=0.00063 Score=78.28 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=52.1
Q ss_pred cchhhhcc-CCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHH
Q 004131 584 MTAKEACG-AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLL 645 (772)
Q Consensus 584 l~v~diM~-~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L 645 (772)
.+++|+|+ ++ ++++++++++.++.+.|.+++.+.+||+|++ ++++|+|+++||++.+
T Consensus 147 ~~V~dim~~~~-~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~----g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 147 QPVSEVMTKER-LVTVPEGTTLEEALELLHEHRIEKLPVVDDN----GRLKGLITVKDIEKAE 204 (486)
T ss_pred CcHHHHcCCCC-CEEECCCCCHHHHHHHHHHcCCCEEEEEcCC----CcEEEEEEhHHhhhhh
Confidence 46889998 67 8999999999999999999999999999987 8999999999998754
No 147
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.31 E-value=0.00058 Score=61.36 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=45.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|+||++|+++...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~ 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc
Confidence 45688999999999999999999999999998999999999999886543
No 148
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.30 E-value=0.00066 Score=60.78 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=45.1
Q ss_pred CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 707 ~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
+++.++++++++.++.+.|.+.+..++||+|++|+++|++|.+|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~ 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVA 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHh
Confidence 45678999999999999999999999999999899999999999987643
No 149
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.27 E-value=0.00066 Score=60.34 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=43.8
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHh
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (772)
++.++++++++.++.+.|++.+.+++||+|++|+++|++|++|+.+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~ 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc
Confidence 467899999999999999999999999999889999999999998754
No 150
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.23 E-value=0.00043 Score=75.45 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=53.1
Q ss_pred ccccccccCC--CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 699 IDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 699 idl~~~m~~~--p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
.+++++|+++ +.++++++++.++.+.|++.+..++||+|++|+++|+||.+|+.+...
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~ 256 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLV 256 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHh
Confidence 5678889998 999999999999999999999999999999999999999999987653
No 151
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.23 E-value=0.00048 Score=75.22 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=52.2
Q ss_pred cccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 698 YIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 698 ~idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
.+.++++|.+ ++.++++++++.++.++|.+.+.+.+||+|++|+++|+||.+|+.+...
T Consensus 201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHh
Confidence 3556778987 8899999999999999999999988888998899999999999987654
No 152
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.22 E-value=0.00073 Score=60.70 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=44.9
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
++.++++++++.++.+.|++.+.+++||+|++|+++|+|+++|+.+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~ 51 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFD 51 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhc
Confidence 45688999999999999999999999999998999999999999876543
No 153
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.19 E-value=0.00093 Score=59.90 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=44.8
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
++.++++++++.++.+.|.+.+..++||+|++++++|++|++|+++...+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~ 51 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVAL 51 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhh
Confidence 34678999999999999999999999999988999999999999986543
No 154
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.19 E-value=0.00084 Score=60.64 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=44.3
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 709 p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
+.++++++++.++.+.|++.+.+.+||+|++|+++|+++.+|+.+...
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLK 50 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhh
Confidence 468899999999999999999999999998899999999999988664
No 155
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.19 E-value=0.00094 Score=60.42 Aligned_cols=50 Identities=26% Similarity=0.293 Sum_probs=45.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
++.++++++++.++.+.|.+.+...+||+|++|+++|+++++|+.+...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~ 51 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEA 51 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhc
Confidence 45788999999999999999999999999998999999999999886543
No 156
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.18 E-value=0.00099 Score=60.75 Aligned_cols=49 Identities=29% Similarity=0.410 Sum_probs=44.9
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+||.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 3578999999999999999999999999998899999999999998764
No 157
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.15 E-value=0.00062 Score=62.39 Aligned_cols=56 Identities=25% Similarity=0.466 Sum_probs=51.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
..+++++|.++ +.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+++|++.
T Consensus 68 ~~~i~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~----g~~~Gvit~~di~~ 123 (124)
T cd04600 68 PETVGDIMSPP-VVTVRPDTPIAELVPLLADGGHHHVPVVDED----RRLVGIVTQTDLIA 123 (124)
T ss_pred cccHHHhccCC-CeeeCCCCcHHHHHHHHHhcCCCceeEEcCC----CCEEEEEEhHHhhc
Confidence 45788999988 9999999999999999999999999999975 88999999999864
No 158
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.15 E-value=0.00081 Score=60.26 Aligned_cols=57 Identities=12% Similarity=0.280 Sum_probs=51.2
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVL 644 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~ 644 (772)
+.+++++|.++ +..+++++++.++.+.+.+++...+||+|++ ++++|+|+++|+++.
T Consensus 52 ~~~v~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~----~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTD-VISVSADDDQEEVARLFEKYDLLALPVVDEE----GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCC-CeEEcCCCCHHHHHHHHHHcCCceeeeECCC----CcEEEEEEhHHhhhh
Confidence 35688999888 8999999999999999999999999999876 789999999999764
No 159
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.14 E-value=0.00085 Score=60.51 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=49.4
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHH
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~ 642 (772)
.++.++|.++ +.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++
T Consensus 58 ~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~----~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNRN-PITAKVGSSREEILALMRERSIRHLPILDEE----GRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcCC-CEEEcCCCCHHHHHHHHHHCCCCEEEEECCC----CCEEEEEEhHHhc
Confidence 4688999888 8899999999999999999999999999875 7899999999985
No 160
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.11 E-value=0.00081 Score=62.12 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=45.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
.+.++++++++.++.+.|.+.+...+||+|++|+++|+++++|+++...+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~ 51 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLS 51 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcC
Confidence 35678999999999999999999999999998999999999999987643
No 161
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.08 E-value=0.0012 Score=59.26 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=49.6
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
..++.++|+.+ +.++++++++.++++.|.+++...+||+|+ ++++|+|+++|+.+
T Consensus 57 ~~~v~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-----~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNPE-PIVASPDDSIDEVRRLMVERHLRYLPVLDG-----GTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCCC-CeEECCCCCHHHHHHHHHHcCCCeeeEEEC-----CEEEEEEEHHHhhc
Confidence 35789999888 889999999999999999999999999984 78999999999864
No 162
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.08 E-value=0.001 Score=62.22 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=44.9
Q ss_pred CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 707 ~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
+++.++++++++.++.+.|.+.+.+++||+|++++++|+|+++|+.+...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~ 51 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAE 51 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhc
Confidence 34578899999999999999999999999999899999999999987543
No 163
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.08 E-value=0.0015 Score=58.19 Aligned_cols=48 Identities=19% Similarity=0.431 Sum_probs=43.8
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHh
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (772)
++.++++++++.++.+.|.+.+.+++||+|++|+++|+++.+|+.+..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY 50 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence 456789999999999999999999999999889999999999998764
No 164
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.07 E-value=0.00097 Score=60.26 Aligned_cols=56 Identities=23% Similarity=0.369 Sum_probs=49.4
Q ss_pred ccchhhhccCCceEEecCc--ccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRI--IKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~--~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
+.++.++|.++ +.+++++ +++.++++.|.+++...+||+|++ ++++|+|+++|+++
T Consensus 57 ~~~i~~~~~~~-~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~----~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQP-VVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ----GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCC-cEEEecccccCHHHHHHHHHHhCCceEEEEcCC----CCEEEEEEhHHhhc
Confidence 35788999888 8888876 689999999999999999999976 89999999999864
No 165
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.07 E-value=0.0011 Score=59.25 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=50.6
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
+.+++++|..+ +.++++++++.++.+.|.+++.+.+||+|++ ++++|+++++|+.+
T Consensus 52 ~~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~----~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKN-PITVNPKTSVASVAHMMIWEGIEMLPVVDDN----KKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCC-CeEECCCCCHHHHHHHHHHcCCCeeeEEcCC----CCEEEEEEHHHhhc
Confidence 45688999888 8999999999999999999999999999976 79999999999864
No 166
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.07 E-value=0.0011 Score=60.71 Aligned_cols=50 Identities=24% Similarity=0.414 Sum_probs=44.9
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHhcC
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~~ 757 (772)
++.++++++++.+++++|.+.+.+.+||+|++ |+++|+|+++|+++...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~ 52 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGG 52 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhc
Confidence 45678999999999999999999999999987 999999999999986654
No 167
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.07 E-value=0.0011 Score=59.76 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=42.7
Q ss_pred CceecCCCCHHHHHHHHHHcC-CCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 709 PYVVPEDMSLSKVYNLFRQLG-LRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 709 p~~V~~~~sL~~a~~lf~~~g-lr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
..++++++++.++.+.|.+.+ .+++||+|++|+++|+||.+|+++...
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPT 51 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHH
Confidence 467899999999999998775 889999999899999999999998764
No 168
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.06 E-value=0.0011 Score=60.26 Aligned_cols=57 Identities=16% Similarity=0.374 Sum_probs=51.6
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
.+.++.++|.++ +.++++++++.++++.|.+.+.+.+||+|++ ++++|+|++.|+++
T Consensus 65 ~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~----~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTRD-PITVSPDASVEEAAELMLERKISGLPVVDDQ----GRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccCC-CeEeCCCCcHHHHHHHHHHcCCCceeEECCC----CcEEEEEEHHHhhh
Confidence 356789999988 9999999999999999999999999999875 78999999999864
No 169
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.06 E-value=0.0013 Score=59.46 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=43.7
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHh
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIED 755 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~ 755 (772)
++.++++++++.++.+.|++.+.+++||+|++ ++++|++|.+|+++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~ 50 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKV 50 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHH
Confidence 45788999999999999999999999999987 8999999999998854
No 170
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.06 E-value=0.0014 Score=60.55 Aligned_cols=47 Identities=30% Similarity=0.441 Sum_probs=43.2
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHh
Q 004131 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (772)
Q Consensus 709 p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (772)
+.++.+++++.++.++|.+.+.+.+||+|++|+++|+||++|+.+.+
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV 49 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 46789999999999999999999999999989999999999998654
No 171
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.04 E-value=0.0013 Score=59.17 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=50.4
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHH
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~ 642 (772)
...++.++|.++ +.++++++++.++++.+.+++.+.+||+|++ ++++|+|++.|+.
T Consensus 56 ~~~~i~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~----g~~~Gvvt~~dl~ 111 (113)
T cd04615 56 KDAKVREVMNSP-VITIDANDSIAKARWLMSNNNISRLPVLDDK----GKVGGIVTEDDIL 111 (113)
T ss_pred cCCcHHHhccCC-ceEECCCCcHHHHHHHHHHcCCCeeeEECCC----CeEEEEEEHHHhh
Confidence 345788999888 9999999999999999999999999999876 7999999999985
No 172
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.04 E-value=0.0013 Score=60.69 Aligned_cols=46 Identities=37% Similarity=0.602 Sum_probs=42.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
++.++.+++++.++.+.|++.+.+++||+|++|+++|+++.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 3568899999999999999999999999998899999999999985
No 173
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.04 E-value=0.0029 Score=72.21 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=53.3
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHh
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQ 646 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~ 646 (772)
.+++|+|+++ ++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++||++...
T Consensus 148 ~~V~diMt~~-~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~----g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 148 TQVRDVMSTD-LVTLPAGTDPREAFDLLEAARVKLAPVVDAD----GRLVGVLTRTGALRATI 205 (479)
T ss_pred CCHHHhccCC-ceEECCCCcHHHHHHHHHhcCCCEEEEEcCC----CeEEEEEEHHHHHHHhh
Confidence 4688999999 9999999999999999999999999999976 79999999999988644
No 174
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.03 E-value=0.0011 Score=61.80 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=45.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
++.++++++++.++.+.|.+.+.+++||+|++|+++|+++++|+++...+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~ 51 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYK 51 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhc
Confidence 45788999999999999999999999999998999999999999886643
No 175
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.03 E-value=0.0011 Score=75.98 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=54.2
Q ss_pred cccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 698 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 698 ~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
.++++++|++++.++.+++++.++.+.|++.+.+.+||+|++++++|+||.+|+++...+
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFA 393 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhc
Confidence 356778899999999999999999999999999999999988999999999999986543
No 176
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.02 E-value=0.0011 Score=59.57 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=44.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+|+.+|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLL 50 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhh
Confidence 4578899999999999999999999999999899999999999987543
No 177
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.01 E-value=0.0015 Score=58.32 Aligned_cols=50 Identities=28% Similarity=0.381 Sum_probs=44.6
Q ss_pred CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 707 PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 707 ~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
+++.++++++++.++.+.|.+.+.+++||+|+ ++++|+++++|+.+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~ 50 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAE 50 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhc
Confidence 35678999999999999999999999999999 999999999999876543
No 178
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.99 E-value=0.0015 Score=74.31 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=51.1
Q ss_pred cccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC---CeEEEEEeHhhhhhH
Q 004131 698 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA---SRVIGLITRKDLLIE 754 (772)
Q Consensus 698 ~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~---g~lvGIITr~DLl~~ 754 (772)
..++++.|.+++.++++++++.++.++|++.+.+.+||+|++ ++++|+||++|+...
T Consensus 79 Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~ 138 (450)
T TIGR01302 79 VKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFV 138 (450)
T ss_pred hccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhh
Confidence 345666788999999999999999999999999999999987 799999999999753
No 179
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.99 E-value=0.0031 Score=69.91 Aligned_cols=124 Identities=19% Similarity=0.241 Sum_probs=93.7
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
.+.+.+..++-++...+.+++++.+||.|.+ .+.+..+++.+-+++.+.........+. +
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~---~~~v~~ilt~~rIl~~l~~~~~~~~~~~-----------------~ 223 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPE---TGEVLYILTQRRILKFLWLNGRLLPLPS-----------------L 223 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeeccc---ccceeeehhHHHHHHHHHHhhcccccHH-----------------H
Confidence 4888899999999999999999999999943 2689999999999988765431111000 0
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
...++.|+.+. +......+.+++++.+++++|++.++..+||||+.|+.+|++++.|+...
T Consensus 224 ------l~~s~~dl~ig-------------~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l 284 (381)
T KOG1764|consen 224 ------LSKSLSDLGIG-------------TWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHL 284 (381)
T ss_pred ------hhCCHHHhCcc-------------hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhh
Confidence 00122222111 22245778999999999999999999999999999999999999999887
Q ss_pred hcC
Q 004131 755 DGE 757 (772)
Q Consensus 755 ~~~ 757 (772)
..+
T Consensus 285 ~~~ 287 (381)
T KOG1764|consen 285 ARE 287 (381)
T ss_pred hhc
Confidence 654
No 180
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.98 E-value=0.0019 Score=57.68 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=44.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++++|+++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~ 50 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIAR 50 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhc
Confidence 4577899999999999999999999999999 999999999999986543
No 181
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.98 E-value=0.0016 Score=57.89 Aligned_cols=55 Identities=15% Similarity=0.317 Sum_probs=49.7
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
..++++|.++ +.++++++++.++++.+.+++.+.+||+|++ ++++|+|+.+|+++
T Consensus 52 ~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~----g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIMSKD-LVVAVPEMDIMDAARVMFRTGISKLPVVDEN----NNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhCCCC-CeEECCCCCHHHHHHHHHHhCCCeEeEECCC----CeEEEEEEHHHhhc
Confidence 4688999888 8999999999999999999999999999986 79999999999863
No 182
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.98 E-value=0.0011 Score=70.23 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=53.4
Q ss_pred cccccccccCC-CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 698 YIDLGPFLNPS-PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 698 ~idl~~~m~~~-p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
.+.++++|+++ +.++++++++.++.+.|.+.+.+.+||+|++|+++|+||.+|+.+...
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~ 213 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALL 213 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHh
Confidence 46677889888 899999999999999999999999999998899999999999988653
No 183
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.98 E-value=0.0013 Score=60.32 Aligned_cols=51 Identities=14% Similarity=0.205 Sum_probs=46.4
Q ss_pred hhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHH
Q 004131 587 KEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (772)
Q Consensus 587 ~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~ 642 (772)
.++|.++ +.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+.
T Consensus 71 ~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----~~~vGiit~~di~ 121 (123)
T cd04627 71 LTIGTSD-VISINGDQPLIDALHLMHNEGISSVAVVDNQ----GNLIGNISVTDVR 121 (123)
T ss_pred cccCcCC-ceEeCCCCCHHHHHHHHHHcCCceEEEECCC----CcEEEEEeHHHhh
Confidence 4578777 8999999999999999999999999999886 7899999999985
No 184
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.97 E-value=0.0017 Score=61.07 Aligned_cols=56 Identities=14% Similarity=0.390 Sum_probs=50.5
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
...+++++|.++ +..+.+++++.++++.|.+++++.+||+++ ++++|+|+++|+.+
T Consensus 79 ~~~~v~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-----~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTEE-IITVSPNDDVVDAAKLMLEANISGLPVVDN-----DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCCC-CeEECCCCCHHHHHHHHHHcCCCEEEEEeC-----CEEEEEEEHHHHhh
Confidence 356799999988 889999999999999999999999999986 68999999999864
No 185
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.96 E-value=0.0049 Score=70.29 Aligned_cols=59 Identities=14% Similarity=0.234 Sum_probs=53.8
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhc
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~ 647 (772)
.+++++|+++ ++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++||++....
T Consensus 146 ~~V~dIMt~~-litv~~~~sL~eAl~lM~~~~i~~LPVVD~~----g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 146 TQVRDIMSTD-LVTAPADTEPRKAFDLLEHAPRDVAPLVDAD----GTLAGILTRTGALRATIY 204 (475)
T ss_pred CCHHHHccCC-ceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC----CeEEEEEEHHHHHHHHhC
Confidence 4689999998 9999999999999999999999999999976 889999999999886543
No 186
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0012 Score=69.17 Aligned_cols=113 Identities=22% Similarity=0.216 Sum_probs=80.5
Q ss_pred hhccchhhhccCCceEEe-cCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCC
Q 004131 581 MRQMTAKEACGAQKVVSL-PRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (772)
Q Consensus 581 l~~l~v~diM~~~~vv~v-~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~ 659 (772)
.+-++++++|.+...... .+...-..+.+.+++.....+.+++.. ++.+|++..+++...
T Consensus 271 ~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~----~~~~g~v~~~~~~~~--------------- 331 (386)
T COG4175 271 SRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG----NKFVGVVSIDSLVKA--------------- 331 (386)
T ss_pred hheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhcc----CceeeEEeccchhcc---------------
Confidence 456688899984212211 222333456667777666666666654 678999987766432
Q ss_pred CCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 004131 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (772)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~ 739 (772)
.+++.+.++.+++++.+.....++.+.. ++|+|++
T Consensus 332 --------------------------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~ 366 (386)
T COG4175 332 --------------------------------------------ALIDDVLTVDADTPLSEILARIRQAPCP-VAVVDED 366 (386)
T ss_pred --------------------------------------------cccccccccCccchHHHHHHHHhcCCCc-eeEEcCC
Confidence 0445557789999999999998887764 8999999
Q ss_pred CeEEEEEeHhhhhhHhcC
Q 004131 740 SRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 740 g~lvGIITr~DLl~~~~~ 757 (772)
++++|+|++.++++++.+
T Consensus 367 ~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 367 GRYVGIISRGELLEALAR 384 (386)
T ss_pred CcEEEEecHHHHHHHHhc
Confidence 999999999999988754
No 187
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.93 E-value=0.0019 Score=57.53 Aligned_cols=48 Identities=31% Similarity=0.369 Sum_probs=43.8
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 709 p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
+.++++++++.++.+.|.+.+.+++||+|+ |+++|++|++|+.+...+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 3 VVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIE 50 (110)
T ss_pred cEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhc
Confidence 467899999999999999999999999998 999999999999987543
No 188
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.93 E-value=0.0023 Score=56.63 Aligned_cols=51 Identities=25% Similarity=0.411 Sum_probs=45.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcCC
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~ 758 (772)
++.++++++++.++.+.|.+.+.+++||+|++++++|+++++|+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~ 52 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEG 52 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhc
Confidence 346788999999999999999999999999989999999999999877543
No 189
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.92 E-value=0.0022 Score=57.46 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=45.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHhcCC
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~~~ 758 (772)
+..++++++++.++.+.|.+.+.+.+||+|++ |+++|++|.+|+++...+.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~ 53 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG 53 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC
Confidence 34678999999999999999999999999998 9999999999999876543
No 190
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.92 E-value=0.0018 Score=58.64 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=47.9
Q ss_pred cchhhhccCCceEEecC--cccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 584 MTAKEACGAQKVVSLPR--IIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~--~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
..++++|..+ ..++.. ++++.++++.|.+++...+||+|++ ++++|+|+++|+.+
T Consensus 57 ~~v~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~----~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPR-EVLVVAPTGITLEEANEILRESKKGKLPIVNDD----GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCC-ceEEECCCCCCHHHHHHHHHhcCCCceeEECCC----CeEEEEEEHHHhhc
Confidence 3578999887 677755 9999999999999999999999876 79999999999863
No 191
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=96.91 E-value=0.0017 Score=58.31 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=49.9
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
.++.++|.++ +.++++++++.++++.+.+++...+||+|++ ++++|+|++.||++
T Consensus 59 ~~v~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~----~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRN-PKTIDPDALAAEALELMEENKITALPVVDDN----GRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccC-CeEECCCCcHHHHHHHHHHcCCCEEEEECCC----CCEEEEEEHHHhhc
Confidence 4688999988 8899999999999999999999999999875 78999999999864
No 192
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.90 E-value=0.0016 Score=58.56 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=49.5
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHH
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~ 642 (772)
.++.++|.++ +.++++++++.++++.+.+++.+.+||+|++ ++++|+|+.+|++
T Consensus 58 ~~v~~i~~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~----~~~~Gvvs~~dl~ 111 (113)
T cd04587 58 TLVERVMTPN-PVCATSDTPVLEALHLMVQGKFRHLPVVDKS----GQVVGLLDVTKLT 111 (113)
T ss_pred CCHHHhcCCC-CeEEcCCCCHHHHHHHHHHcCCCcccEECCC----CCEEEEEEHHHhc
Confidence 5788999888 8899999999999999999999999999975 7899999999985
No 193
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.89 E-value=0.0021 Score=57.62 Aligned_cols=54 Identities=11% Similarity=0.361 Sum_probs=48.9
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~ 642 (772)
+.++.++|.++ +..+++++++.++++.+.+++.+.+||+|+ ++++|+|+++|+.
T Consensus 57 ~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~Gvi~~~di~ 110 (112)
T cd04802 57 EVPVGEVMSTP-LITIDPNASLNEAAKLMAKHGIKRLPVVDD-----DELVGIVTTTDIV 110 (112)
T ss_pred cCCHHHhcCCC-cEEECCCCCHHHHHHHHHHcCCCeeEEeeC-----CEEEEEEEhhhhh
Confidence 45788999888 899999999999999999999999999986 4899999999985
No 194
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.88 E-value=0.002 Score=58.85 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=51.2
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
...++.++|.++ +.++++++++.++.+.|.+++.+.+||+|++ ++++|+++++|+++
T Consensus 65 ~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~----g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTP-VYSVTPDDSIATAVELMLEHDIGRLPVVNEK----DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCC-CeeECCCCCHHHHHHHHHHcCCCeeeEEcCC----CcEEEEEEhHHhhc
Confidence 356788999888 8999999999999999999999999999876 89999999999864
No 195
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.88 E-value=0.0017 Score=58.15 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=49.6
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
..+.++|..+ +.++++++++.++.+.|.+++.+.+||+|++ ++++|+++++|+.+
T Consensus 56 ~~v~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~----~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRRD-FPTVSPSATLDAVLRLMQQGGAPAVPVVDGS----GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcCC-CcEECCCCcHHHHHHHHHhcCCceeeEEcCC----CCEEEEEEHHHhhc
Confidence 3688899888 9999999999999999999999999999875 78999999999864
No 196
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.87 E-value=0.0024 Score=57.26 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=44.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
++.++++++++.++.+.|.+.+.+.+||+|++|+++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~ 50 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDL 50 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHh
Confidence 3467899999999999999999999999998899999999999987643
No 197
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.86 E-value=0.0018 Score=59.02 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=51.3
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
...++.++|.++ +.++++++++.++++.|.+.+.+.+||+|++ ++++|+|++.|+..
T Consensus 65 ~~~~v~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~----~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTD-VLTVTPDTPLREAAEIMVENKIGCLPVVDDK----GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCC-CeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC----CCEEEEEEHHHhhc
Confidence 456789999888 8999999999999999999999999999885 78999999999864
No 198
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.85 E-value=0.0022 Score=57.28 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=50.2
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
..+++++|.++ +.++++++++.++++.+.+.+...+||+|++ +++.|+|+++|+.+
T Consensus 55 ~~~v~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~----~~~~Gvi~~~di~~ 110 (111)
T cd04611 55 QTPVGEVMSSP-LLTVPADTSLYDARQLMREHGIRHLVVVDDD----GELLGLLSQTDLLQ 110 (111)
T ss_pred CcCHHHhcCCC-ceEECCCCCHHHHHHHHHHcCCeEEEEECCC----CcEEEEEEhHHhhc
Confidence 46788999888 8999999999999999999888899999975 78999999999863
No 199
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.84 E-value=0.0022 Score=58.36 Aligned_cols=48 Identities=23% Similarity=0.459 Sum_probs=43.7
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHh
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (772)
++.++++++++.++.+.|.+.+.+++||+|++|+++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence 456789999999999999999999999999989999999999998754
No 200
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.84 E-value=0.003 Score=46.65 Aligned_cols=47 Identities=23% Similarity=0.474 Sum_probs=42.0
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHH
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLL 645 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L 645 (772)
+.++++++++.++.+.+.+++++.+||++++ ++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE----GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC----CeEEEEEEHHHHHHhh
Confidence 5678899999999999999999999999986 7899999999997654
No 201
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.83 E-value=0.0021 Score=73.71 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=52.4
Q ss_pred ccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHH
Q 004131 583 QMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVL 644 (772)
Q Consensus 583 ~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~ 644 (772)
+.+++|+|++ + ++++++++++.++.+.|.+++.+.+||||++ ++++|+|+++|+++.
T Consensus 160 ~~~V~dIMt~~~~-~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~----g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 160 DTKVKDFMTPFEK-LVTANEGTTLKEANDIIWDHKLNTLPIVDKN----GNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCHHHHhCCCCC-eEEECCCCcHHHHHHHHHHcCCCEEEEEcCC----CeEEEEEEhHHHHhc
Confidence 4679999996 6 8999999999999999999999999999976 789999999999874
No 202
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.83 E-value=0.002 Score=57.46 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=48.2
Q ss_pred ccchhhhccCCceEEecC-cccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPR-IIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~-~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
+.++.++|.++ +..+.+ ++++.++++.+.+++++.+||+|++ ++++|+|+++|+++
T Consensus 53 ~~~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~----~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPE-NLLTTVEGTSLEEALELLHEHKIEKLPVVDDE----GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccC-ceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC----CCEEEEEEhhhhhc
Confidence 45788999876 666666 9999999999999999999999975 78999999999863
No 203
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.82 E-value=0.0027 Score=56.80 Aligned_cols=55 Identities=22% Similarity=0.428 Sum_probs=49.6
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
..++.++|.++ +.++++++++.++.+.|.+.+.+.+||+| + ++++|+|++.|+++
T Consensus 55 ~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~----~~~~Gvvt~~di~~ 109 (110)
T cd04595 55 HAPVKDYMSTD-VVTVPPDTPLSEVQELMVEHDIGRVPVVE-D----GRLVGIVTRTDLLR 109 (110)
T ss_pred cCcHHHHhcCC-CEEECCCCcHHHHHHHHHHcCCCeeEEEe-C----CEEEEEEEhHHhhc
Confidence 46788999888 89999999999999999999999999998 4 78999999999863
No 204
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.82 E-value=0.0022 Score=57.38 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=49.8
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
..++.++|.++ +.++++++++.++++.|.+++.+.+||+++ ++++|+++++|+++
T Consensus 56 ~~~i~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAP-PITIPPDATVFEALLLMLERGIHHLPVVDD-----GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCC-CeEECCCCcHHHHHHHHHHcCCCeeeEeEC-----CEEEEEEEHHHhhc
Confidence 35788999888 999999999999999999999999999986 68999999999864
No 205
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.82 E-value=0.0038 Score=69.36 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=43.3
Q ss_pred cCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 706 NPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 706 ~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
.++..++++++++.+++....+.+.. ++|+|+ |+++|+|++.++++.+.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 332 EAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred cccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHhc
Confidence 44557899999999999999988876 888987 999999999999988753
No 206
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.79 E-value=0.002 Score=57.79 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=49.6
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
.++.++|..+ +.++++++++.++.+.+.+++.+.+||+|++ ++++|+|++.|+.+
T Consensus 58 ~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRG-VVTVTEDDDVDEAARLMREHQVRRLPVVDDD----GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCC-ccEECCCCCHHHHHHHHHHcCCCeeeEECCC----CcEEEEEEHHHhhc
Confidence 3588999888 8999999999999999999999999999875 78999999999864
No 207
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.79 E-value=0.0014 Score=73.42 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=53.6
Q ss_pred cccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcCC
Q 004131 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 700 dl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~ 758 (772)
.+.+.+..+|++|++++|+.+|.+.|.+.|...+.|+|++++..||||++|+.+....+
T Consensus 150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~ 208 (610)
T COG2905 150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIAD 208 (610)
T ss_pred HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhc
Confidence 35566899999999999999999999999999999999999999999999999987653
No 208
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.79 E-value=0.0029 Score=56.72 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=49.4
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
..+++++|.++ +..+++++++.++++.|.+++...+||+|+ ++++|+|+++|+.+
T Consensus 56 ~~~i~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATFP-LITVDPDDFLFNALLLMTRHRIHRVVVREG-----GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCCC-cEEECCCCcHHHHHHHHHHhCccEEEEeeC-----CEEEEEEEhHHhhc
Confidence 34688999888 899999999999999999999999999985 68999999999864
No 209
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.74 E-value=0.0026 Score=56.90 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=44.8
Q ss_pred hccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 589 ACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 589 iM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
+|.++ +.++++++++.++.+.|.+++.+.+||+++ ++++|+|+++|+.+
T Consensus 56 ~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~-----~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPS-PFTVSPRTSLEKVHQLFRKLGLRHLLVVDE-----GRLVGIITRKDLLK 104 (105)
T ss_pred hccCC-CceECCCCcHHHHHHHHHHcCCCEEEEEEC-----CeEEEEEEhhhhhc
Confidence 88888 899999999999999999999999999964 79999999999864
No 210
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.72 E-value=0.0032 Score=57.36 Aligned_cols=56 Identities=27% Similarity=0.514 Sum_probs=50.5
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
...++.++|.++ +.++++++++.++++.|.+.+.+.+||+|+ ++++|+|+++|+++
T Consensus 65 ~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTRP-VITIEPDTSVSDVASLMLENNIGGLPVVDD-----GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccCC-ceEECCCCcHHHHHHHHHHcCCCcccEEEC-----CEEEEEEEHHHhhc
Confidence 456788999888 899999999999999999999999999986 68999999999864
No 211
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.72 E-value=0.0035 Score=55.42 Aligned_cols=53 Identities=15% Similarity=0.355 Sum_probs=48.5
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHH
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLL 642 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~ 642 (772)
.++.++|.++ +.++++++++.++++.|.+++.+.+||+|+ ++++|+|+++|+.
T Consensus 51 ~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTRE-VVTISPEASLLEAKRLMEEKKIERLPVLRE-----RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccCC-CEEECCCCCHHHHHHHHHHcCCCEeeEEEC-----CEEEEEEEHHHhc
Confidence 3578899888 999999999999999999999999999986 6899999999985
No 212
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.70 E-value=0.0029 Score=60.07 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=44.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
++.++++++++.++.+.|++.+...+||+|+ ++++|++|++|+++.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~ 49 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLV 49 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHH
Confidence 4678999999999999999999999999998 99999999999988764
No 213
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.70 E-value=0.0052 Score=55.41 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=49.1
Q ss_pred ccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcCCC
Q 004131 705 LNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 705 m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~~ 759 (772)
|.+.+.++.+++++.++...|.+.+...+||++. ++++|++|.+|+.++.....
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~ 58 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGG 58 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccC
Confidence 5578899999999999999999999999999987 68999999999999886543
No 214
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.67 E-value=0.0029 Score=56.20 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=47.5
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 585 ~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
++.++|.++ ..++++++++.++++.|.+++.+.+||+|+ ++++|+|+++|+..
T Consensus 51 ~~~~~~~~~-~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-----~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRG-IPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-----GKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcC-CcEEcCCCCHHHHHHHHHHcCcceEEEEEC-----CEEEEEEEHHHhhc
Confidence 467788887 889999999999999999999999999984 78999999999863
No 215
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.59 E-value=0.0048 Score=55.96 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=42.4
Q ss_pred CCceecCCCCHHHHHHHHHHcC-CCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 708 SPYVVPEDMSLSKVYNLFRQLG-LRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 708 ~p~~V~~~~sL~~a~~lf~~~g-lr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
++.++++++++.++.+.|++.+ .+.+||+|+ |+++|+++.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~ 50 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLS 50 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHh
Confidence 4467899999999999999887 889999999 99999999999987543
No 216
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.56 E-value=0.0046 Score=56.45 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=50.0
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
.++.++|.++ +.++++++++.++.+.+.+++.+.+||+|++ ++++|+++++|+++
T Consensus 67 ~~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~----~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTRD-PITVSPDTPVDEASKLLLENSISCLPVVDEN----GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcCC-CeeeCCCCcHHHHHHHHHHcCCCeEeEECCC----CCEEEEEEHHHhhh
Confidence 4688999988 9999999999999999999999999999876 78999999999864
No 217
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.47 E-value=0.0056 Score=64.76 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=57.4
Q ss_pred hhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcc
Q 004131 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (772)
Q Consensus 581 l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~ 648 (772)
.++.++..+|+++ +.++.+.+++..+.+.|.-.+.+-+||+|++ .+++|+|+|+|+++.|+..
T Consensus 246 ~~~t~ieKVMtkn-p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n----~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 246 KPSTTIEKVMTKN-PITVRAKTSVASVAQMMIWEGIEMLPVVDSN----NTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred CCCccHHHHhccC-CeeecccchHHHHHHHHHhccceeeeEEcCC----ceEEEEEEHHHHHHHHHHh
Confidence 3566788999999 9999999999999999999999999999997 8999999999999988754
No 218
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.36 E-value=0.0057 Score=68.82 Aligned_cols=57 Identities=21% Similarity=0.300 Sum_probs=50.1
Q ss_pred cccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHhc
Q 004131 700 DLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 756 (772)
Q Consensus 700 dl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~ 756 (772)
.++++|.+ ++.+++.+++++++.+.+.+.+.+++||.+++ ++++|+|+.||++.+..
T Consensus 192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc
Confidence 35556887 67899999999999999999999999999874 79999999999997654
No 219
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.32 E-value=0.0081 Score=69.12 Aligned_cols=61 Identities=16% Similarity=0.331 Sum_probs=53.8
Q ss_pred ccchhhhccCC-ceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhc
Q 004131 583 QMTAKEACGAQ-KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (772)
Q Consensus 583 ~l~v~diM~~~-~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~ 647 (772)
+.+++++|+++ +++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+.+.+..
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~----g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED----GELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC----CeEEEEEEHHHHHHHhhC
Confidence 46789999853 26799999999999999999999999999976 799999999999987654
No 220
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.20 E-value=0.0077 Score=64.57 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=49.8
Q ss_pred cccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHh
Q 004131 700 DLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIED 755 (772)
Q Consensus 700 dl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~ 755 (772)
.++++|.+ +..+++++++++++.+.+++.+..++||++++ ++++|+|+.+|++...
T Consensus 68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM 126 (292)
T ss_pred EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh
Confidence 45667987 57899999999999999999999999999876 7999999999998755
No 221
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.14 E-value=0.0072 Score=69.45 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=52.9
Q ss_pred ccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHH
Q 004131 583 QMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLL 645 (772)
Q Consensus 583 ~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L 645 (772)
+.+++|+|++ + ++++++++++.++.+.|.+++.+.+||+|++ ++++|+|+++|+++..
T Consensus 158 ~~~V~diMt~~~~-lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~----g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 158 STPVSEVMTPREK-LVVGNTPISLEEANEVLRESRKGKLPIVNDN----GELVALVSRSDLKKNR 217 (495)
T ss_pred CCCHHHhhCCcCC-ceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC----CcEEEEEEehHhhhcc
Confidence 4579999997 7 8999999999999999999999999999986 7899999999998753
No 222
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.99 E-value=0.016 Score=51.46 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=47.2
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 585 ~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
.+.++|..+ +.++++++++.++.+.+.+++.+.+||+|+ ++++|+|+.+|+..
T Consensus 53 ~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTRD-PPTVSPDDDVKEAAKLMVENNIRRVPVVDD-----GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcCC-CceECCCCCHHHHHHHHHHcCCCEEEEEEC-----CEEEEEEEHHHhhc
Confidence 467888887 889999999999999999999999999985 68999999999864
No 223
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.015 Score=65.42 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=57.4
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcc
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~ 648 (772)
.+..++|+|.++ +++++++++-+++.+.+++++.-..||||++ ++++|+|+.+|++..++..
T Consensus 194 ~~~~i~~im~~~-~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~----~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 194 PDELLKDLMEDD-VVSVLADDDQEEVARLFEKYDLLAVPVVDED----NRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred cHhHHHHHhccc-ceeecccCCHHHHHHHHHHhCCeecceECCC----CceeeeeeHHHHHHHHHHH
Confidence 356789999999 9999999999999999999999999999997 8999999999999988764
No 224
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.92 E-value=0.048 Score=60.32 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=51.7
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcc
Q 004131 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (772)
Q Consensus 585 ~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~ 648 (772)
.+.+.|..+ +.++++++++.+++..+.++++. +||+|++ ++++|+|++.+++..+...
T Consensus 303 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~----~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 303 GLQDVLIDD-IYTVDAGTLLRETVRKVLKAGIK-VPVVDED----QRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred chhhhhccC-CceECCCCcHHHHHHHHHhCCCC-EEEECCC----CcEEEEEEHHHHHHHHHhh
Confidence 467778877 88999999999999999999998 9999987 8999999999999987653
No 225
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.10 E-value=0.17 Score=56.65 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=50.5
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcc
Q 004131 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (772)
Q Consensus 585 ~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~ 648 (772)
++++.|.++ ..++++++++.+++..+.++.+. +||||++ ++++|+|++.++++.+..+
T Consensus 338 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~----~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 338 GLDAALIDA-PLAVDAQTPLSELLSHVGQAPCA-VPVVDED----QQYVGIISKGMLLRALDRE 395 (400)
T ss_pred chhhhhccC-CceeCCCCCHHHHHHHHHhCCCc-EEEECCC----CcEEEEEEHHHHHHHHHhc
Confidence 566777777 88999999999999999887765 9999986 8999999999999988654
No 226
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=92.80 E-value=0.11 Score=56.26 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=52.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVL 644 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~ 644 (772)
...+.|+|+++ .++.+...+++++-++|++++...+||||++ ++++-+|+|.||.+.
T Consensus 170 ~~~~~~vmt~~-~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~----gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 170 SLLVSDVMTKN-PVTGAQGITLKEANEILKKIKKGKLPVVDDK----GELVAMLSRTDLMKN 226 (503)
T ss_pred cchhhhhcccc-cccccccccHHHHHHHHHhhhcCCcceeccC----Cceeeeeehhhhhhh
Confidence 45678999998 7889999999999999999999999999997 899999999999764
No 227
>PRK11573 hypothetical protein; Provisional
Probab=92.63 E-value=0.24 Score=55.86 Aligned_cols=56 Identities=5% Similarity=0.056 Sum_probs=47.2
Q ss_pred ccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHhc
Q 004131 701 LGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 756 (772)
Q Consensus 701 l~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~ 756 (772)
++++|.+ +...++.+++++++.+.+++.+..++||.+++ ++++|+|..||++....
T Consensus 189 v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~ 247 (413)
T PRK11573 189 VDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT 247 (413)
T ss_pred hhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh
Confidence 4445755 35788999999999999999999999998765 88999999999997643
No 228
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=91.96 E-value=0.35 Score=55.28 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=69.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHHHHHHHHHHHHHH----------hhhcCCCchHHHHHHHh
Q 004131 442 IHEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVN----------FYKKLNIEEGTYALLGA 511 (772)
Q Consensus 442 ~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~----------~~~~~~~~~~~~aliGa 511 (772)
++.+.+.+|+ .|.+-.+.+.+.|.-.|---|++=.||+.+..+|+-=.. ++. ..-|-.-+..+|+
T Consensus 181 P~ivrl~TL~----~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~Fr-nDrdrRD~VscGa 255 (762)
T KOG0474|consen 181 PGIVRLRTLI----VKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFR-NDRDRRDLVSCGA 255 (762)
T ss_pred cceeehhhhH----HhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhc-ccchhhhhhhcch
Confidence 3444555544 799999999999999999999999999999999873211 111 1345667889999
Q ss_pred hhhhhccccchhHHhHHHHHhcCCc
Q 004131 512 ASFLGGSMRMTVSLCVIMVEITNNL 536 (772)
Q Consensus 512 aa~l~g~~r~pis~~vi~~E~Tg~~ 536 (772)
||-.+++.|+|+..+++.+|=-.++
T Consensus 256 AAGVaAAF~APvGGvLFaLEE~aS~ 280 (762)
T KOG0474|consen 256 AAGVAAAFRAPVGGVLFALEEGASW 280 (762)
T ss_pred HHhHHHHhCCCccceEEEechhhHH
Confidence 9999999999999999999865443
No 229
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=90.89 E-value=0.51 Score=54.34 Aligned_cols=131 Identities=24% Similarity=0.223 Sum_probs=84.8
Q ss_pred hhhccchhhhccC--CceEEecCcccHH-HHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCC
Q 004131 580 KMRQMTAKEACGA--QKVVSLPRIIKVA-DVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (772)
Q Consensus 580 ~l~~l~v~diM~~--~~vv~v~~~~tv~-~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~ 656 (772)
.+....++|+|++ + +..+..+.++. +....+.+.+|+.+||.+.+. ..-+|......+...+....
T Consensus 200 ~l~ek~~~evmtpi~~-~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~---~~~i~~~L~~~~~~~~~~~~------- 268 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIED-VFALDANTKLDRETVGEIVKHGYSRIPVYEQEP---KNKIGGLLVMNLLRLLQVEV------- 268 (498)
T ss_pred HHHHHHHHHhccchhh-heeeccccccchHHHhhHhhcCcceeeeccCcc---cchhhHHHHhhhhhhhcccc-------
Confidence 3567788999987 4 55556666655 455566788999999998752 33344443333333221110
Q ss_pred CCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 004131 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (772)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVV 736 (772)
.....++..++.+....+++++++.+..+.|++... |+.|+
T Consensus 269 --------------------------------------~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~-H~~~v 309 (498)
T KOG2118|consen 269 --------------------------------------PLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKS-HMAVV 309 (498)
T ss_pred --------------------------------------ccccccchhhhccccccCCCcccHHHHHHHHhhhhc-eeEEE
Confidence 001123444466677789999999999999997665 55565
Q ss_pred cCCCeEEEEEeHhhhhhHhcCCCcc
Q 004131 737 PRASRVIGLITRKDLLIEDGEDSTT 761 (772)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~~~~ 761 (772)
.+...-++++|..|+ +...++..+
T Consensus 310 ~~~~~~~~~~~l~~~-~~~~~ev~d 333 (498)
T KOG2118|consen 310 RNGHVDIFVLTLEDL-EEVVKEVED 333 (498)
T ss_pred ecCCcceeeEeccch-hhhcceecc
Confidence 555778999999998 665544443
No 230
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=88.25 E-value=1.7 Score=49.30 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=45.1
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~ 648 (772)
+..+++.+++.++++.|++.+.+-.-|+|+. |...|+||.+|++..+-..
T Consensus 281 ~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy----G~~~GlVTleDIiEeIvGe 330 (429)
T COG1253 281 PLFVPETLSLSDLLEEFREERTHMAIVVDEY----GGVEGLVTLEDIIEEIVGE 330 (429)
T ss_pred CeEecCCCcHHHHHHHHHHhCCeEEEEEEcC----CCeEEEeEHHHHHHHHhCC
Confidence 7889999999999999999988888889986 8899999999999887654
No 231
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=87.61 E-value=2.6 Score=49.45 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=54.2
Q ss_pred cccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC--CeEEEEEeHhhhhhHhcCCC
Q 004131 698 YIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA--SRVIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 698 ~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~--g~lvGIITr~DLl~~~~~~~ 759 (772)
.+.+.++|.++..++..+++..|.-+.+....+|.+|+||+. --++|.|.|+.|...+++++
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHI 650 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhc
Confidence 467888999999999999999999988887779999999875 45999999999998887644
No 232
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.69 E-value=1.5 Score=45.39 Aligned_cols=42 Identities=31% Similarity=0.310 Sum_probs=35.7
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 713 PEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 713 ~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
.......+++..+...+...+||+|++|+++|.||+.|++++
T Consensus 267 ~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 267 LEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred ccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 344555668888888999999999999999999999999865
No 233
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=83.37 E-value=2.2 Score=47.63 Aligned_cols=55 Identities=9% Similarity=0.137 Sum_probs=44.7
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhc
Q 004131 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (772)
Q Consensus 585 ~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~ 647 (772)
++.+ +.++ ..++++++++.+++....++++ -+||+|+ ++++|+|++.+++..|..
T Consensus 327 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-----~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 327 EVES-LEAA-PTVINPDTLMRDVLAARHRTGG-AILLVEN-----GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred chhh-hccc-CcccCCCCcHHHHHHHHhcCCC-CeEEeeC-----CeEEEEEeHHHHHHHHhc
Confidence 3455 5556 7888999999999998888765 5888875 799999999999987753
No 234
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=74.50 E-value=5.3 Score=42.79 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=43.8
Q ss_pred hccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhc
Q 004131 589 ACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (772)
Q Consensus 589 iM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~ 647 (772)
.+.++ +.++..++++.+++....+.. ..+||+|++ ++++|+|++.+++.+|..
T Consensus 332 ~~~~~-~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~----~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALIDD-VLTVDADTPLSEILARIRQAP-CPVAVVDED----GRYVGIISRGELLEALAR 384 (386)
T ss_pred ccccc-ccccCccchHHHHHHHHhcCC-CceeEEcCC----CcEEEEecHHHHHHHHhc
Confidence 45556 788889999999988877654 478999997 999999999999988754
No 235
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=68.14 E-value=19 Score=36.88 Aligned_cols=58 Identities=24% Similarity=0.269 Sum_probs=47.6
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhc
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~ 647 (772)
..++++.++ .+.+++.-++...++-+++.+.+-.-|||+- |-+-|+||..|++..+-.
T Consensus 133 F~i~~lLRP--av~VPESKrvd~lLkeFR~~RnHMAIViDEf----GgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 133 FDIKELLRP--AVVVPESKRVDRLLKEFRSQRNHMAIVIDEF----GGVSGLVTIEDILEQIVG 190 (293)
T ss_pred ccHHHhccc--ceecccchhHHHHHHHHHhhcCceEEEEecc----CCeeeeEEHHHHHHHHhc
Confidence 445666554 6889999999999999998887778899986 889999999999887644
No 236
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=60.72 E-value=16 Score=39.90 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=43.2
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~ 648 (772)
+..+++.+++.+-+..+++++.+---|||+. |.+.|+||.+|++.-+-..
T Consensus 277 pyFVPe~Tpl~~QL~~F~~~k~hialVVDEY----G~i~GLVTLEDIlEEIVGd 326 (423)
T COG4536 277 PYFVPEGTPLSDQLVAFQRNKKHIALVVDEY----GDIQGLVTLEDILEEIVGD 326 (423)
T ss_pred CeecCCCCcHHHHHHHHHHhcceEEEEEecc----CcEEeeeeHHHHHHHHhcc
Confidence 7889999999999999988887777789986 8999999999998866543
No 237
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=56.62 E-value=17 Score=37.93 Aligned_cols=57 Identities=21% Similarity=0.204 Sum_probs=37.6
Q ss_pred hccchhhhccCCceE----EecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH
Q 004131 582 RQMTAKEACGAQKVV----SLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV 643 (772)
Q Consensus 582 ~~l~v~diM~~~~vv----~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~ 643 (772)
...++.|.|.+. .. .+.....-.+++..+...+...+||+|++ ++++|.|++.+++.
T Consensus 247 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~----g~~~G~vt~~~l~~ 307 (309)
T COG1125 247 SLVSVADAVRRG-EPADGEPLLEGFVDRDALSDFLARGRSVLPVVDED----GRPLGTVTRADLLD 307 (309)
T ss_pred chhhHHHhhccc-ccccCCccccchhhHHHHHHHHhcCCceeEEECCC----CcEeeEEEHHHHhh
Confidence 345566666543 11 12233344445555556677789999998 99999999999975
No 238
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=55.70 E-value=8.5 Score=25.22 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.1
Q ss_pred hhhhHHHhhhhhhhhhhhcCCcc
Q 004131 228 DRRDLVTCGCAAGVAAAFRAPVG 250 (772)
Q Consensus 228 ~~r~li~~GaaAgvaaaF~APig 250 (772)
.||+|+..+++++.++++.++.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 48999999999999999988764
No 239
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=52.73 E-value=3.4e+02 Score=32.58 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=11.7
Q ss_pred HHHHHhhhhhhccccccccC
Q 004131 171 LIGKIFGSIGSVGGGLALGK 190 (772)
Q Consensus 171 l~~K~~~~~~sv~sG~svG~ 190 (772)
+..-++|.+.+.+.|.++=|
T Consensus 458 l~g~iiG~mv~~~m~gpi~k 477 (631)
T PRK09765 458 LLGAILGFMCSFDLGGPVNK 477 (631)
T ss_pred HHHHHHHHHHHHcCCCccch
Confidence 44445566666666666655
No 240
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=51.92 E-value=5.1e+02 Score=31.91 Aligned_cols=83 Identities=18% Similarity=0.291 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccch----------hHHhHHHHHhcCCcchHHHHHHHHHHH
Q 004131 480 IGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMT----------VSLCVIMVEITNNLKFLPLIMLVLLIS 549 (772)
Q Consensus 480 iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~p----------is~~vi~~E~Tg~~~~l~pimia~~va 549 (772)
+||+.|...|.++..-. ...|....+.|-+++++|..|-. ++.+++.+=..++..+ ...+.-+++|
T Consensus 197 ~Gaa~Gv~~Gli~~l~~---~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~-~~~~~e~~ia 272 (764)
T TIGR02865 197 AGAAGGVVIGVILGLAN---NANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAF-SLALYEALIA 272 (764)
T ss_pred HhHHHHHHHHHHHHhcC---ccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhH-HHHHHHHHHH
Confidence 47777777777765332 33455556667777788887633 2233333322233332 2223455555
Q ss_pred HHHHhhcCcchHHHHHH
Q 004131 550 KAVGDAFSEGLYEEQAH 566 (772)
Q Consensus 550 ~~v~~~~~~~iy~~~l~ 566 (772)
..+--.++..+|+..-+
T Consensus 273 ~~lFll~P~~~~~~~~~ 289 (764)
T TIGR02865 273 TLLFLLIPNKIYKKLER 289 (764)
T ss_pred HHHHHHhhHHHHHHHHh
Confidence 55554557777776653
No 241
>PRK02509 hypothetical protein; Provisional
Probab=39.22 E-value=5.1e+02 Score=32.47 Aligned_cols=20 Identities=10% Similarity=0.391 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 004131 318 ELLPMAVIGVIGGLLGALFN 337 (772)
Q Consensus 318 ~l~~~~~lGv~~Gl~g~~f~ 337 (772)
.+|...++.+++.+++.+|.
T Consensus 326 ~LP~~~iL~~ia~l~A~~~~ 345 (973)
T PRK02509 326 QLPVYTILSILAGIIAFWLL 345 (973)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888777775
No 242
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=34.59 E-value=58 Score=39.07 Aligned_cols=146 Identities=10% Similarity=0.054 Sum_probs=75.9
Q ss_pred cchHHHHHHhhC--CCCCCCCchhhhhccchhhhccCCceEEecCccc-HHHHHHHHhhCCCCeeEEEeCCCCCCcEEEE
Q 004131 558 EGLYEEQAHLRG--VPLLESRPKYKMRQMTAKEACGAQKVVSLPRIIK-VADVVSILRTNKHNGFPVIDHSRNGERLVIG 634 (772)
Q Consensus 558 ~~iy~~~l~~kg--~p~L~~~~~~~l~~l~v~diM~~~~vv~v~~~~t-v~~~~~~L~~~~~~~fPVVd~~~~~~~~lvG 634 (772)
..|.++|.+-+. .|.... .+..+......+.+.++ -..+....+ +.++.+.+..++ ..+.+.|.+ |.++.
T Consensus 14 ~~I~~SW~Rc~~~~~p~~~~-~~~~l~~~~~~~~~~~~-~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~----G~vL~ 86 (638)
T PRK11388 14 PLIATSWERCNKLMKRETWN-VPHQAQGVTFASIYRRK-KALLTLGQAALEDAWEYMADRE-CALLILDET----GCILS 86 (638)
T ss_pred hHHHHHHHHHHhcCCCcccC-CCCcCCHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCC----ceEEE
Confidence 345666655443 332211 11223333445555544 223333344 556666676666 688888886 89999
Q ss_pred eeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecC
Q 004131 635 LVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE 714 (772)
Q Consensus 635 iItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~ 714 (772)
+....++...+.... +.+.....+... ++. . +.+ ......|++|..
T Consensus 87 ~~g~~~~~~~~~~~~-~~~G~~w~E~~~-------------------GTn--a-----------ig~-al~~~~pv~v~g 132 (638)
T PRK11388 87 RNGDPQTLQQLSALG-FNDGTYCAEGII-------------------GTN--A-----------LSL-AAISGQPVKTMG 132 (638)
T ss_pred EeCCHHHHHHHHHcC-CccCCccchhcc-------------------CcC--H-----------HHH-HHhcCCceEEec
Confidence 888888776554322 111000000000 000 0 000 012345566665
Q ss_pred CCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEe
Q 004131 715 DMSLSKVYNLFRQLGLRHIFVVPRASRVIGLIT 747 (772)
Q Consensus 715 ~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIIT 747 (772)
.....+. +........||.|.+|+++|+|+
T Consensus 133 ~EH~~~~---~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 133 DQHFKQA---LHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred HHHHHHh---ccCceEEeeEEEcCCCCEEEEEE
Confidence 5444443 44556678999999999999996
No 243
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.71 E-value=64 Score=29.79 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=15.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHH
Q 004131 313 DYSFEELLPMAVIGVIGGLLGALF 336 (772)
Q Consensus 313 ~~~~~~l~~~~~lGv~~Gl~g~~f 336 (772)
.|.-.. +..+++|+++|++|.++
T Consensus 60 ~fs~~~-i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 60 RFSEPA-IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp SSS-TC-HHHHHHHHHHHHHHHHH
T ss_pred Cccccc-eeehhHHHHHHHHHHHH
Confidence 343333 36788899999988765
No 244
>PRK01844 hypothetical protein; Provisional
Probab=27.91 E-value=1.3e+02 Score=24.90 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 004131 318 ELLPMAVIGVIGGLLGALFN 337 (772)
Q Consensus 318 ~l~~~~~lGv~~Gl~g~~f~ 337 (772)
-++..+++++++|+++.+|.
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445667888888877776
No 245
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=25.18 E-value=1e+02 Score=27.69 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccc
Q 004131 475 VPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRM 521 (772)
Q Consensus 475 ~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~ 521 (772)
+||+..|..+|.++|..-.....+... -..+++.|.+++++|++.+
T Consensus 28 i~SL~aGl~~G~l~g~~s~~l~~~~~~-~~~~~l~~~s~~L~gvmg~ 73 (110)
T KOG4267|consen 28 IPSLAAGLLFGALAGYGSYLLSRDKKG-GSLVALGGTSAALLGVMGQ 73 (110)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCCc-CchhHHHHHHHHHHHHHhh
Confidence 699999999999888776555422111 2245555567777776643
No 246
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=22.81 E-value=2.7e+02 Score=22.43 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 004131 70 YSVVVKWFFALLIGIG-TGLAAVFINISVE 98 (772)
Q Consensus 70 ~~~~~~w~~~~liGv~-~Gl~a~~~~~~i~ 98 (772)
+.++.+-..+..+|++ +|++++++.....
T Consensus 29 ~~Ef~~ia~~~~iG~~i~G~iGf~Ikli~~ 58 (61)
T PRK09400 29 REEFLLVAKVTGLGILLIGLIGFIIYLIMT 58 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777774 5999988876654
No 247
>COG4129 Predicted membrane protein [Function unknown]
Probab=22.44 E-value=1.9e+02 Score=31.71 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=25.4
Q ss_pred chhHHhHHHHHhcCCcc----hHHHHHHHHHHHHHHHhhcCcchHHHH
Q 004131 521 MTVSLCVIMVEITNNLK----FLPLIMLVLLISKAVGDAFSEGLYEEQ 564 (772)
Q Consensus 521 ~pis~~vi~~E~Tg~~~----~l~pimia~~va~~v~~~~~~~iy~~~ 564 (772)
..+...-++++.+++.. =+.-+++++.+|..+.-++..+=|+..
T Consensus 108 ~~~~~~~ii~~~~~~~~~~~~r~l~~~vG~~~a~lvn~~~~~~~~~~~ 155 (332)
T COG4129 108 ITVGVLHILVAAMIPLFLIFNRFLLVFVGVGVAFLVNLVMPPPDYELK 155 (332)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHhhhcCCchHHHH
Confidence 33444445566665433 245578888899888877633224433
No 248
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=21.35 E-value=3.9e+02 Score=23.17 Aligned_cols=50 Identities=22% Similarity=0.437 Sum_probs=28.9
Q ss_pred HHHhcCccCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhh
Q 004131 462 VVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLG 516 (772)
Q Consensus 462 ~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~ 516 (772)
.++-+-.+.-=+|+==..+|+...-.-|..+-++. .++| .|++|.+|.++
T Consensus 23 ~L~s~Epit~RL~iGR~ilGs~~S~~Aga~Li~~P---dl~p--lAv~GlgsalG 72 (89)
T PF04550_consen 23 VLASNEPITLRLFIGRVILGSAVSVVAGAALIQFP---DLPP--LAVIGLGSALG 72 (89)
T ss_pred HHccCCCCchhHHhHHHHHhhHHHHHHHHHHhcCC---CCCH--HHHHHHHHHHH
Confidence 34444444444555555566666666666654433 4444 68888888775
No 249
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=20.83 E-value=59 Score=23.89 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=10.4
Q ss_pred hhhhhhHH--Hhhhhhhhhhh
Q 004131 226 DRDRRDLV--TCGCAAGVAAA 244 (772)
Q Consensus 226 ~~~~r~li--~~GaaAgvaaa 244 (772)
+..||+|+ +.++.++++++
T Consensus 8 ~~~RRdFL~~at~~~gavG~~ 28 (41)
T PF10399_consen 8 DPTRRDFLTIATSAVGAVGAA 28 (41)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 45677776 55555555553
No 250
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.58 E-value=2.4e+02 Score=23.28 Aligned_cols=19 Identities=26% Similarity=0.698 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004131 319 LLPMAVIGVIGGLLGALFN 337 (772)
Q Consensus 319 l~~~~~lGv~~Gl~g~~f~ 337 (772)
.++.+++++++|++|.+|.
T Consensus 6 ail~ivl~ll~G~~~G~fi 24 (71)
T COG3763 6 AILLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888776
No 251
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=20.52 E-value=1.2e+02 Score=34.79 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 716 MSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 716 ~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
..++.+.+...+.|-.-++|+++ |++.|+|..||+++-
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~~-~~~~GVI~LkDivK~ 450 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVEN-GRILGVIYLKDIVKP 450 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEEC-CEEEEEEEehhhcch
Confidence 35788888888999888999987 999999999999874
Done!