Query 004131
Match_columns 772
No_of_seqs 459 out of 2686
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3org_A CMCLC; transporter, tra 100.0 3E-87 1E-91 785.8 41.4 603 74-760 8-628 (632)
2 3nd0_A SLL0855 protein; CLC fa 100.0 1.1E-68 3.9E-73 602.2 39.5 439 45-567 2-443 (466)
3 1ots_A Voltage-gated CLC-type 100.0 1.6E-66 5.4E-71 587.0 40.4 417 73-568 33-452 (465)
4 4ene_A CLC-EC1, H(+)/CL(-) exc 100.0 5E-66 1.7E-70 579.5 41.9 412 75-567 19-436 (446)
5 2d4z_A Chloride channel protei 99.8 4.1E-21 1.4E-25 198.9 13.8 181 571-758 1-247 (250)
6 4esy_A CBS domain containing m 99.7 2.2E-18 7.6E-23 168.1 10.2 150 580-758 14-163 (170)
7 3lv9_A Putative transporter; C 99.7 2.8E-17 9.6E-22 156.2 13.0 127 580-759 19-147 (148)
8 3kpb_A Uncharacterized protein 99.7 3.5E-17 1.2E-21 149.8 12.9 121 584-758 1-121 (122)
9 3hf7_A Uncharacterized CBS-dom 99.7 2.8E-17 9.4E-22 153.0 11.4 127 583-759 1-129 (130)
10 3i8n_A Uncharacterized protein 99.7 3.1E-17 1.1E-21 152.4 11.5 126 581-757 3-129 (130)
11 3lhh_A CBS domain protein; str 99.7 5.2E-17 1.8E-21 158.8 13.5 130 580-762 38-169 (172)
12 3lfr_A Putative metal ION tran 99.7 1.8E-17 6.2E-22 155.4 9.2 128 583-761 2-131 (136)
13 2ef7_A Hypothetical protein ST 99.7 7.8E-17 2.7E-21 150.0 12.7 127 582-760 2-128 (133)
14 3jtf_A Magnesium and cobalt ef 99.7 2.9E-17 9.8E-22 152.5 9.6 124 582-759 3-128 (129)
15 3oco_A Hemolysin-like protein 99.7 3.7E-17 1.3E-21 156.5 10.6 129 581-762 17-148 (153)
16 3gby_A Uncharacterized protein 99.7 4.8E-17 1.6E-21 150.7 10.6 125 582-758 3-127 (128)
17 3fhm_A Uncharacterized protein 99.7 1E-16 3.5E-21 155.4 13.0 138 574-761 14-154 (165)
18 2rih_A Conserved protein with 99.7 2.2E-16 7.4E-21 148.7 14.4 122 583-756 4-127 (141)
19 3nqr_A Magnesium and cobalt ef 99.7 3.5E-17 1.2E-21 151.4 8.3 123 583-757 2-126 (127)
20 3k6e_A CBS domain protein; str 99.7 7.5E-17 2.6E-21 155.2 10.0 128 584-759 15-144 (156)
21 2yzi_A Hypothetical protein PH 99.7 2.7E-16 9.2E-21 147.3 13.0 130 581-761 4-133 (138)
22 2p9m_A Hypothetical protein MJ 99.7 1.4E-16 4.7E-21 149.1 10.8 128 580-758 4-137 (138)
23 3lqn_A CBS domain protein; csg 99.7 2.1E-16 7.2E-21 150.3 11.5 137 577-760 8-146 (150)
24 1pbj_A Hypothetical protein; s 99.7 4E-16 1.4E-20 143.3 12.7 123 584-758 1-123 (125)
25 3fv6_A YQZB protein; CBS domai 99.7 3.2E-16 1.1E-20 150.9 12.0 130 579-759 12-146 (159)
26 4gqw_A CBS domain-containing p 99.7 1.8E-16 6E-21 150.7 9.8 142 582-760 3-146 (152)
27 3k2v_A Putative D-arabinose 5- 99.7 2.8E-16 9.5E-21 149.6 11.1 119 584-753 28-148 (149)
28 1o50_A CBS domain-containing p 99.7 6.4E-16 2.2E-20 148.4 13.3 142 580-759 12-155 (157)
29 3ocm_A Putative membrane prote 99.6 4.6E-16 1.6E-20 152.3 12.1 128 581-762 33-162 (173)
30 2rc3_A CBS domain; in SITU pro 99.6 1.3E-15 4.6E-20 142.0 13.9 123 585-758 7-132 (135)
31 1y5h_A Hypothetical protein RV 99.6 3.1E-16 1E-20 145.9 9.4 126 581-757 5-131 (133)
32 3sl7_A CBS domain-containing p 99.6 1.8E-16 6.2E-21 155.3 8.0 153 583-758 3-157 (180)
33 3oi8_A Uncharacterized protein 99.6 1.9E-16 6.5E-21 152.1 7.5 120 581-753 35-156 (156)
34 2o16_A Acetoin utilization pro 99.6 2.9E-16 1E-20 151.5 8.8 134 582-758 3-136 (160)
35 3kxr_A Magnesium transporter, 99.6 5.1E-16 1.7E-20 156.3 10.9 125 582-762 52-179 (205)
36 2emq_A Hypothetical conserved 99.6 1.3E-15 4.6E-20 145.8 11.3 135 580-761 7-143 (157)
37 3ctu_A CBS domain protein; str 99.6 1.3E-15 4.6E-20 145.8 10.7 133 581-761 12-146 (156)
38 1pvm_A Conserved hypothetical 99.6 2.9E-15 9.8E-20 148.0 13.3 126 583-757 8-133 (184)
39 2pfi_A Chloride channel protei 99.6 1.5E-15 5.2E-20 146.3 11.1 133 581-758 10-148 (164)
40 2uv4_A 5'-AMP-activated protei 99.6 2.4E-15 8.2E-20 143.6 11.4 134 579-757 18-151 (152)
41 1yav_A Hypothetical protein BS 99.6 8.7E-16 3E-20 147.7 8.3 134 581-761 11-146 (159)
42 2nyc_A Nuclear protein SNF4; b 99.6 2.7E-15 9.2E-20 141.2 11.4 128 581-757 5-141 (144)
43 4fry_A Putative signal-transdu 99.6 3.5E-15 1.2E-19 143.0 12.1 127 584-761 7-139 (157)
44 2j9l_A Chloride channel protei 99.6 3.5E-15 1.2E-19 146.9 11.9 156 579-760 6-168 (185)
45 3l2b_A Probable manganase-depe 99.6 1.1E-14 3.8E-19 150.6 11.9 170 583-757 6-244 (245)
46 2yvy_A MGTE, Mg2+ transporter 99.5 1.7E-14 5.9E-19 152.2 12.5 128 582-765 133-265 (278)
47 1vr9_A CBS domain protein/ACT 99.5 1.2E-14 4E-19 147.3 10.5 120 583-758 12-131 (213)
48 3pc3_A CG1753, isoform A; CBS, 99.5 1.4E-14 4.9E-19 166.5 12.4 153 557-761 357-515 (527)
49 2oux_A Magnesium transporter; 99.5 8.7E-15 3E-19 155.1 8.9 122 582-759 135-261 (286)
50 3ddj_A CBS domain-containing p 99.5 1.6E-14 5.4E-19 153.4 9.4 137 583-763 155-291 (296)
51 2yzq_A Putative uncharacterize 99.5 4.1E-14 1.4E-18 148.8 10.5 156 583-758 125-280 (282)
52 3kh5_A Protein MJ1225; AMPK, A 99.5 4.5E-14 1.5E-18 148.1 10.0 132 584-755 148-279 (280)
53 3t4n_C Nuclear protein SNF4; C 99.5 9.5E-14 3.2E-18 149.3 11.1 128 582-758 185-321 (323)
54 2zy9_A Mg2+ transporter MGTE; 99.4 1.2E-13 4E-18 156.3 9.6 122 582-759 153-279 (473)
55 3kh5_A Protein MJ1225; AMPK, A 99.4 7.6E-13 2.6E-17 138.7 14.2 123 583-757 83-205 (280)
56 3ddj_A CBS domain-containing p 99.4 2.4E-13 8.1E-18 144.3 10.3 123 582-756 91-213 (296)
57 2qrd_G Protein C1556.08C; AMPK 99.4 7E-13 2.4E-17 143.2 13.1 129 583-760 181-318 (334)
58 2yzq_A Putative uncharacterize 99.4 2.9E-13 9.8E-18 142.4 7.5 118 584-757 1-119 (282)
59 2v8q_E 5'-AMP-activated protei 99.3 2.4E-12 8.3E-17 138.8 11.8 144 579-756 30-176 (330)
60 2v8q_E 5'-AMP-activated protei 99.3 2E-12 6.8E-17 139.5 10.3 133 584-759 190-325 (330)
61 4ene_A CLC-EC1, H(+)/CL(-) exc 99.3 7.4E-12 2.5E-16 140.2 14.6 185 78-284 239-423 (446)
62 3usb_A Inosine-5'-monophosphat 99.3 1.9E-12 6.4E-17 147.3 9.6 119 584-757 113-234 (511)
63 1vrd_A Inosine-5'-monophosphat 99.3 3.1E-14 1E-18 162.5 -6.0 177 521-758 32-216 (494)
64 3t4n_C Nuclear protein SNF4; C 99.3 6.6E-12 2.3E-16 134.8 12.0 132 584-758 114-249 (323)
65 1ots_A Voltage-gated CLC-type 99.3 1.2E-11 4.1E-16 139.3 14.1 186 76-283 252-437 (465)
66 1zfj_A Inosine monophosphate d 99.3 8.9E-12 3E-16 142.0 12.6 118 585-757 91-211 (491)
67 3nd0_A SLL0855 protein; CLC fa 99.3 1.3E-11 4.6E-16 138.5 12.5 182 77-283 248-429 (466)
68 4fxs_A Inosine-5'-monophosphat 99.3 9E-13 3.1E-17 149.4 2.9 119 584-757 89-209 (496)
69 1jcn_A Inosine monophosphate d 99.3 1.3E-14 4.3E-19 166.3 -13.3 179 524-757 47-233 (514)
70 3org_A CMCLC; transporter, tra 99.3 5.8E-11 2E-15 139.1 17.3 102 454-556 105-211 (632)
71 4avf_A Inosine-5'-monophosphat 99.2 1.4E-12 4.8E-17 147.8 0.5 118 584-757 88-207 (490)
72 1me8_A Inosine-5'-monophosphat 99.2 1.7E-12 5.8E-17 147.8 0.6 128 581-759 93-223 (503)
73 2qrd_G Protein C1556.08C; AMPK 99.2 9.9E-11 3.4E-15 126.2 12.8 132 587-758 110-244 (334)
74 4af0_A Inosine-5'-monophosphat 99.1 4.6E-12 1.6E-16 140.2 -0.2 117 587-756 141-257 (556)
75 2cu0_A Inosine-5'-monophosphat 99.1 3.2E-13 1.1E-17 153.4 -10.3 170 524-756 32-207 (486)
76 4esy_A CBS domain containing m 98.5 1.4E-07 4.8E-12 91.2 7.5 59 699-757 18-76 (170)
77 3ghd_A A cystathionine beta-sy 98.5 2.2E-07 7.7E-12 75.9 7.4 47 594-645 1-47 (70)
78 3ghd_A A cystathionine beta-sy 98.4 4E-07 1.4E-11 74.5 7.1 48 709-757 2-49 (70)
79 3l2b_A Probable manganase-depe 98.3 9.8E-07 3.4E-11 90.5 8.1 61 699-759 7-67 (245)
80 1vr9_A CBS domain protein/ACT 98.3 6.4E-07 2.2E-11 90.1 6.4 60 583-647 71-130 (213)
81 3fio_A A cystathionine beta-sy 98.3 1.3E-06 4.3E-11 70.9 6.6 49 709-758 2-50 (70)
82 3k2v_A Putative D-arabinose 5- 98.2 2.4E-06 8.2E-11 80.4 8.0 60 699-758 28-89 (149)
83 3gby_A Uncharacterized protein 98.2 1.8E-06 6.1E-11 78.9 6.9 59 699-758 5-63 (128)
84 2o16_A Acetoin utilization pro 98.2 2.1E-06 7.1E-11 81.9 6.9 58 699-756 5-62 (160)
85 3fio_A A cystathionine beta-sy 98.2 5.1E-06 1.7E-10 67.2 8.1 47 595-646 2-48 (70)
86 3kpb_A Uncharacterized protein 98.2 1.8E-06 6E-11 78.0 5.8 57 701-757 3-59 (122)
87 3nqr_A Magnesium and cobalt ef 98.2 1.7E-06 5.8E-11 79.1 5.6 57 701-757 5-64 (127)
88 2rih_A Conserved protein with 98.1 4E-06 1.4E-10 77.9 8.1 59 699-757 5-65 (141)
89 3lv9_A Putative transporter; C 98.1 2.8E-06 9.6E-11 79.7 7.1 58 699-756 23-83 (148)
90 2yzi_A Hypothetical protein PH 98.1 3.8E-06 1.3E-10 77.6 7.8 56 699-754 7-62 (138)
91 2p9m_A Hypothetical protein MJ 98.1 4.1E-06 1.4E-10 77.3 7.6 59 699-757 8-67 (138)
92 3jtf_A Magnesium and cobalt ef 98.1 3.1E-06 1.1E-10 77.5 6.1 57 700-756 6-65 (129)
93 2d4z_A Chloride channel protei 98.1 3.9E-06 1.3E-10 86.4 7.4 58 699-756 13-72 (250)
94 3fv6_A YQZB protein; CBS domai 98.1 6E-06 2E-10 78.6 8.2 57 699-756 17-73 (159)
95 1pbj_A Hypothetical protein; s 98.1 3.1E-06 1E-10 76.6 5.7 56 701-757 3-58 (125)
96 3lfr_A Putative metal ION tran 98.1 4.6E-06 1.6E-10 77.2 6.9 56 701-756 5-63 (136)
97 3lqn_A CBS domain protein; csg 98.1 4.4E-06 1.5E-10 78.4 6.7 59 699-757 15-75 (150)
98 2ef7_A Hypothetical protein ST 98.1 6.6E-06 2.3E-10 75.4 7.4 57 700-757 5-61 (133)
99 2emq_A Hypothetical conserved 98.0 6.1E-06 2.1E-10 78.0 6.6 59 699-757 11-71 (157)
100 1yav_A Hypothetical protein BS 98.0 4.3E-06 1.5E-10 79.4 5.5 59 699-757 14-74 (159)
101 3i8n_A Uncharacterized protein 98.0 3.3E-06 1.1E-10 77.4 4.4 59 700-758 7-68 (130)
102 4gqw_A CBS domain-containing p 98.0 7.2E-06 2.5E-10 76.7 6.8 56 699-754 5-62 (152)
103 2pfi_A Chloride channel protei 98.0 6.4E-06 2.2E-10 78.3 6.4 59 699-757 13-73 (164)
104 3ctu_A CBS domain protein; str 98.0 5.1E-06 1.8E-10 78.6 5.5 57 700-756 16-74 (156)
105 3k6e_A CBS domain protein; str 98.0 5.5E-06 1.9E-10 78.9 5.6 56 701-756 17-74 (156)
106 3hf7_A Uncharacterized CBS-dom 98.0 5.4E-06 1.8E-10 76.1 5.3 58 701-758 4-64 (130)
107 1y5h_A Hypothetical protein RV 98.0 4.3E-06 1.5E-10 76.7 4.6 57 700-756 9-66 (133)
108 2nyc_A Nuclear protein SNF4; b 98.0 1.3E-05 4.4E-10 74.3 7.9 54 704-757 16-69 (144)
109 3oi8_A Uncharacterized protein 98.0 7.9E-06 2.7E-10 77.5 6.4 59 699-757 38-99 (156)
110 1pvm_A Conserved hypothetical 98.0 9.8E-06 3.4E-10 79.1 7.2 58 699-756 9-66 (184)
111 3lhh_A CBS domain protein; str 98.0 8.4E-06 2.9E-10 78.8 6.5 60 699-758 42-104 (172)
112 3fhm_A Uncharacterized protein 97.9 7.4E-06 2.5E-10 78.4 5.3 58 699-756 24-84 (165)
113 2j9l_A Chloride channel protei 97.9 9.6E-06 3.3E-10 78.8 5.9 59 698-756 10-76 (185)
114 3sl7_A CBS domain-containing p 97.9 7.7E-06 2.6E-10 79.1 4.9 55 700-754 5-61 (180)
115 2rc3_A CBS domain; in SITU pro 97.9 1.4E-05 4.7E-10 73.5 5.8 55 700-755 7-64 (135)
116 1o50_A CBS domain-containing p 97.9 1.4E-05 4.9E-10 75.7 6.1 56 699-755 16-72 (157)
117 2uv4_A 5'-AMP-activated protei 97.8 2.4E-05 8.3E-10 73.6 7.0 56 700-757 24-79 (152)
118 3ocm_A Putative membrane prote 97.8 2.4E-05 8.3E-10 75.7 6.7 57 700-756 37-96 (173)
119 3kxr_A Magnesium transporter, 97.7 4.1E-05 1.4E-09 76.3 6.6 62 583-649 115-176 (205)
120 3oco_A Hemolysin-like protein 97.7 6E-05 2.1E-09 71.0 7.2 60 583-648 85-144 (153)
121 3pc3_A CG1753, isoform A; CBS, 97.6 4.5E-05 1.5E-09 87.3 6.5 59 699-757 384-444 (527)
122 4fry_A Putative signal-transdu 97.6 6.3E-05 2.2E-09 71.0 6.3 61 582-648 76-136 (157)
123 2oux_A Magnesium transporter; 97.4 0.00014 4.9E-09 76.3 6.2 54 701-754 139-197 (286)
124 3usb_A Inosine-5'-monophosphat 97.3 0.00073 2.5E-08 76.6 10.3 60 583-647 174-234 (511)
125 2yvy_A MGTE, Mg2+ transporter 97.3 0.0002 6.7E-09 74.9 5.1 60 583-647 198-257 (278)
126 2zy9_A Mg2+ transporter MGTE; 97.1 0.00041 1.4E-08 78.1 5.9 62 582-648 217-278 (473)
127 4fxs_A Inosine-5'-monophosphat 97.0 0.00055 1.9E-08 77.4 5.7 53 701-753 91-143 (496)
128 1me8_A Inosine-5'-monophosphat 97.0 0.00021 7.2E-09 81.1 2.2 61 582-646 159-220 (503)
129 1zfj_A Inosine monophosphate d 96.6 0.0014 4.7E-08 74.2 5.4 55 700-754 91-147 (491)
130 1vrd_A Inosine-5'-monophosphat 96.6 0.00034 1.2E-08 79.3 0.2 55 699-753 95-149 (494)
131 4af0_A Inosine-5'-monophosphat 96.3 0.00067 2.3E-08 75.5 0.0 57 583-644 199-255 (556)
132 2cu0_A Inosine-5'-monophosphat 96.3 0.0014 4.9E-08 73.9 2.7 58 583-645 149-206 (486)
133 1jcn_A Inosine monophosphate d 96.1 0.0011 3.8E-08 75.5 0.5 55 700-754 109-166 (514)
134 4avf_A Inosine-5'-monophosphat 96.0 0.0012 4.1E-08 74.5 0.2 52 701-753 90-141 (490)
135 2pq4_B Periplasmic nitrate red 27.2 29 0.00098 23.6 1.7 25 228-252 4-28 (35)
136 2ww9_B Protein transport prote 26.5 2.3E+02 0.0077 23.0 7.2 42 55-96 27-71 (80)
137 1rh5_B Preprotein translocase 21.7 2.4E+02 0.0083 22.5 6.4 31 70-100 31-62 (74)
No 1
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=100.00 E-value=3e-87 Score=785.78 Aligned_cols=603 Identities=24% Similarity=0.411 Sum_probs=450.0
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHH
Q 004131 74 VKWF-FALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (772)
Q Consensus 74 ~~w~-~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (772)
.||+ +++++|+++|+++++++..++++++++.... +...+ ...|+.|+.+++++++++++++++++|.++||||||
T Consensus 8 ~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~ 84 (632)
T 3org_A 8 LRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKIS-RLAGR--FAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQ 84 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh--hHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHH
Confidence 3555 7899999999999999999999998764332 22222 445667777888888899999999999999999999
Q ss_pred HHHHHcccc--ccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhc-ccCChhhh
Q 004131 153 IKGYLNGVD--IHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQ-VFRSDRDR 229 (772)
Q Consensus 153 v~~~l~g~~--~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~-~f~~~~~~ 229 (772)
||++++|.. +++.+++|+++.|++++++++++|+|+|||||++|+||++|+.+++. ++++ .++++++|
T Consensus 85 v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~---------~~f~~~~~~~~~~ 155 (632)
T 3org_A 85 MKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRL---------GVFKELCTDRALR 155 (632)
T ss_dssp HHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTS---------HHHHHHHHSHHHH
T ss_pred HHHHHhCccccccccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhh---------hhhccccCCHHHH
Confidence 999999976 67889999999999999999999999999999999999999988751 0222 22378899
Q ss_pred hhHHHhhhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCC
Q 004131 230 RDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISD 309 (772)
Q Consensus 230 r~li~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 309 (772)
|++++||+|||+||+|||||+|++|++||+.++|+.+.+|+++++|++++++++.+... ......|+. .|++
T Consensus 156 r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~--~~~~~~~~~----~~~~-- 227 (632)
T 3org_A 156 LQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLYTT--PLVEAFEGT----NFDA-- 227 (632)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC--ccccccccc----cccc--
Confidence 99999999999999999999999999999999999999999999999999887643210 000011111 1222
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCC
Q 004131 310 GQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPES 389 (772)
Q Consensus 310 ~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~ 389 (772)
..++++.++ +++++|++||++|++|+++++...++ +.++..+.+|++++++++++++++. .|..
T Consensus 228 -~~~~~~~~l-~~~~lGi~~Gl~g~~f~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~--~p~~--------- 291 (632)
T 3org_A 228 -SDVSRTQTL-LYAILGALMGVLGALFIRCVRSIYEL---RMRHYPGTNRYFLVGVVALFASALQ--YPFR--------- 291 (632)
T ss_dssp --CCCCSCTH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHSSTTCCTHHHHHHHHHHHHHHT--TTC----------
T ss_pred -cCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcchhHHHHHHHHHHHHHHHH--HHHH---------
Confidence 235778889 99999999999999999555544333 2222223457778887777766532 2221
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCC---CcchHHHHHHHHHHHHHHHHHHhc
Q 004131 390 DLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTI---HEYSAQSLLTFLVMFYTLAVVTFG 466 (772)
Q Consensus 390 ~~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~---~~~~~~~l~~~~~~k~~~t~~t~g 466 (772)
.| . + +.++.++.+|++.+. +.+.+..+++++++|+++|++|+|
T Consensus 292 -----------~g-------------~-~---------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g 337 (632)
T 3org_A 292 -----------LF-------------A-L---------DPRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIG 337 (632)
T ss_dssp ---------------------------------------CHHHHHHHHSCC----------CCSSHHHHHHHHHHHHHTT
T ss_pred -----------hc-------------C-C---------cHHHHHHHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHh
Confidence 01 0 0 112445555543221 133445677889999999999999
Q ss_pred CccCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHHHH
Q 004131 467 IAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVL 546 (772)
Q Consensus 467 ~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia~ 546 (772)
+|+|||+|+|++++||++|+++|.+++.++|. .++|+.||++||||+++|++|+|+++ ||++|+||++++++|+|+++
T Consensus 338 ~g~pGGif~P~l~iGA~~G~~~g~~~~~~~p~-~~~p~~~a~vGmaa~~~~v~~ap~t~-vi~~E~tg~~~~~lpl~ia~ 415 (632)
T 3org_A 338 LPLPAGVFVPSFLIGAGFGRLYGELMRVVFGN-AIVPGSYAVVGAAAFTAGVTRALSCA-VIIFEVTGQIRHLVPVLISV 415 (632)
T ss_dssp SSSBCBCHHHHHHHHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHHSCCTTHH-HHHHHHTCCCSCSHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCChhHHHHHHHHH
Confidence 99999999999999999999999999887753 37899999999999999999998876 58999999999999999999
Q ss_pred HHHHHHHhhcCcchHHHHHHhhCCCCCCCCchhhhhccchhhhcc--CCceEEecCcccHHHHHHHHh-hCCCCeeEEEe
Q 004131 547 LISKAVGDAFSEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACG--AQKVVSLPRIIKVADVVSILR-TNKHNGFPVID 623 (772)
Q Consensus 547 ~va~~v~~~~~~~iy~~~l~~kg~p~L~~~~~~~l~~l~v~diM~--~~~vv~v~~~~tv~~~~~~L~-~~~~~~fPVVd 623 (772)
++|+++++.+++++||.+++.|++|++++..++..++++|+|+|+ ++ +++++++++++|+.+.|+ +++++++||+|
T Consensus 416 ~~a~~v~~~~~~~iY~~~~~~k~lp~l~~~~~~~~~~~~V~diM~p~~~-v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd 494 (632)
T 3org_A 416 LLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEG-EPHLFPDSEPQHIKGILEKFPNRLVFPVID 494 (632)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHTTCCEEEEECTTCCTTSBHHHHCBCTTT-SCCBCSSSCHHHHHHHHHHSTTCCEECBBC
T ss_pred HHHHHHHHHhCCCHHHHHHHhcCCCccccccccccccCcHHHHhhcCCC-ceEecCCCcHHHHHHHHHhcCCcceEEEEe
Confidence 999999999989999999999999998866666668999999999 78 999999999999999999 89999999999
Q ss_pred CCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccc--ccccccCCCCCCcc-cccCCccc-----c
Q 004131 624 HSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFS--EFVKPASSKGLSID-DIHLSSDD-----M 695 (772)
Q Consensus 624 ~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~-di~~~~~~-----~ 695 (772)
++ ++++|+|+++|+++.+.++....+++ .+.+ +....+. .+.+.......... .......+ .
T Consensus 495 ~~----~~lvGiVt~~DL~~~l~~~~~~~~~~--~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~ 564 (632)
T 3org_A 495 AN----GYLLGAISRKEIVDRLQHVLEDVPEP--IAGH----RTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVL 564 (632)
T ss_dssp TT----CBBCCEESHHHHTTTTTTC-------------------------------------------------------
T ss_pred cC----CeEEEEEEHHHHHHHHHHHhhhcccc--cccc----cceeccCHHHHHhhcccCCCCCcccchhhhcccceEee
Confidence 86 89999999999988765432011110 0000 0000000 00000000000000 00000000 0
Q ss_pred cccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcCCCc
Q 004131 696 EMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDST 760 (772)
Q Consensus 696 ~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~~~ 760 (772)
+..-+++++|+++|.+|++++++.++.++|++++.+++||+ ++|+++||||++|+++.+.++.+
T Consensus 565 ~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~~~~~~ 628 (632)
T 3org_A 565 EPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGYSNSLE 628 (632)
T ss_dssp ------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECCCC---
T ss_pred ccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHHhhhHH
Confidence 11113788999999999999999999999999999999999 55999999999999998876543
No 2
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=100.00 E-value=1.1e-68 Score=602.22 Aligned_cols=439 Identities=21% Similarity=0.354 Sum_probs=343.7
Q ss_pred CCcccchhchHHHHHHHhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHH
Q 004131 45 SLDYEVIENYAYREEQAQRGKLYVGYSVVVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYI 124 (772)
Q Consensus 45 sldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (772)
..|||+++++ +.++.+++.+....+..++.+++++++|+++|+++.+|+..+++++++++..... .....+..|+.++
T Consensus 2 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~ 79 (466)
T 3nd0_A 2 AADFETSNRR-WLDKLPRNLTDSARSLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQI-LAPIPPLAWLVTA 79 (466)
T ss_dssp -------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTSCTHHHHHHH
T ss_pred CccHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccHHHHHHHH
Confidence 3699999444 4333333222222222333455899999999999999999999999998876432 2222333345555
Q ss_pred HHHHHHHHHHHHHhhhccccccCCCHHHHHHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHH
Q 004131 125 LINLILVFSSVYIITKFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASL 204 (772)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~ 204 (772)
.++.+++++++++++++.|+++|||||||+++++|.+ +..++|+++.|++++++++++|+|+|||||++|+||++|++
T Consensus 80 ~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~~l~g~~--~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~ 157 (466)
T 3nd0_A 80 LISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKL--PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQM 157 (466)
T ss_dssp HHHHHHHHHHHHHHTTTCGGGSBCSHHHHHHHTTSSS--CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcCCCCHHHHHHHHcCCC--CCchHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHH
Confidence 5666677778889999999999999999999999854 34568999999999999999999999999999999999999
Q ss_pred hhccCccccchhhhhhcccCChhhhhhHHHhhhhhhhhhhhcCCccceeeeeeecchhhh--hhhHHHHHHHHHHHHHHH
Q 004131 205 LGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWR--SQLMWRVFFTSAIVAVVV 282 (772)
Q Consensus 205 l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~GaaAgvaaaF~APigGvlFalE~~~~~~~--~~~~~~~~~~~~va~~v~ 282 (772)
++| ++|. +++|||++++||+|||+||+||||++|++|++||+.++|+ ...++++++++++++++.
T Consensus 158 l~~-----------~~~~--~~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~ 224 (466)
T 3nd0_A 158 TGG-----------WFKA--TQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIIL 224 (466)
T ss_dssp HHH-----------HTTC--CHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHHH
T ss_pred HHH-----------HcCC--ChhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 997 4443 6788999999999999999999999999999999988884 355779999999988888
Q ss_pred HHhhhhccCCcccccCCCceEEEecCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhh
Q 004131 283 RSAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIE 362 (772)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (772)
+.+. ++.+ .|+++. ...+++.++++++++|++||++|.+|+ +.+.+..+++.+. .+..++++
T Consensus 225 ~~~~-----------g~~~--~f~~~~-~~~~~~~~l~~~illGi~~Gl~g~lf~---~~~~~~~~~~~~~-~~~~~~~~ 286 (466)
T 3nd0_A 225 RMIR-----------GQSA--IISLTE-FKRVPLDSLWMFIILGILFGVMGYTFN---RGLFKVLDWFDRL-PPLATKWK 286 (466)
T ss_dssp HHHT-----------CSSC--SSCCTT-CCCCCGGGHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTC-CHHHHHHH
T ss_pred HHHc-----------CCCC--ceecCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHc-ccccHHHH
Confidence 7642 3333 345542 345678999999999999999999999 5555555544221 12235677
Q ss_pred hHHHHHHHHHHHhcccccccCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCC
Q 004131 363 ACVISVITSVISFGLPLLRKCSPCPESDLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTI 442 (772)
Q Consensus 363 ~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~ 442 (772)
+.+++++++++.++.|.. .| .| | +.++.+++
T Consensus 287 ~~l~g~~~g~l~~~~p~~--------------------~G-----------~G--~------------~~i~~~~~---- 317 (466)
T 3nd0_A 287 GFLLGSIIGILSLFPLPL--------------------TD-----------GG--D------------NAVLWAFN---- 317 (466)
T ss_dssp HHHHHHHHHHHTTSSSSC--------------------SS-----------SS--H------------HHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHH--------------------cC-----------Cc--H------------HHHHHHHc----
Confidence 888888899888877654 12 12 3 34566654
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCccCcccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccch
Q 004131 443 HEYSAQSLLTFLVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMT 522 (772)
Q Consensus 443 ~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~p 522 (772)
+++++..++++++.|+++|++|+|+|+|||+|+|++++||++|+++|.+++.++|..+.+|+.||++||+|+++|++|+|
T Consensus 318 ~~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~v~~aP 397 (466)
T 3nd0_A 318 SQSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEPAVMAIAGMGALVAATVRAP 397 (466)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTTTCSSTHHHHHHTTSHHHHHHHSCH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhhH
Confidence 34667888899999999999999999999999999999999999999999998887789999999999999999999999
Q ss_pred hHHhHHHHHhcCCcchHHHHHHHHHHHHHHHhhc-CcchHHHHHHh
Q 004131 523 VSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAF-SEGLYEEQAHL 567 (772)
Q Consensus 523 is~~vi~~E~Tg~~~~l~pimia~~va~~v~~~~-~~~iy~~~l~~ 567 (772)
+|+++|++|+||++++++|+|+++++|+++++.+ ++++||.++++
T Consensus 398 lt~ivlv~Eltg~~~~~lpl~ia~~iA~~v~~~~~~~~iY~~~l~r 443 (466)
T 3nd0_A 398 LTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLLER 443 (466)
T ss_dssp HHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999999999999 79999999875
No 3
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=100.00 E-value=1.6e-66 Score=587.04 Aligned_cols=417 Identities=26% Similarity=0.473 Sum_probs=345.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHH
Q 004131 73 VVKWFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPE 152 (772)
Q Consensus 73 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipe 152 (772)
+..|++++++|+++|+++.+|+..+++++++++........ .....|+.++.++++++++++++++++.|+++||||||
T Consensus 33 ~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~l~~~~~p~a~GsGip~ 111 (465)
T 1ots_A 33 LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTAD-NYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPE 111 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccccHHHHHHHHHHHHHHHHHHHHHHhCccccCCChHH
Confidence 34577999999999999999999999999998876432211 11122344567777888899999999999999999999
Q ss_pred HHHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhH
Q 004131 153 IKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDL 232 (772)
Q Consensus 153 v~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~l 232 (772)
++++++|.+ +..++|+++.|++++++++++|+|+|||||++|+||++|+.++| ++|. ++++|||++
T Consensus 112 v~~~l~~~~--~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~-----------~~~l-~~~~~~r~l 177 (465)
T 1ots_A 112 IEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL-KGDEARHTL 177 (465)
T ss_dssp HHHHHTTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC-CSHHHHHHH
T ss_pred HHHHHhCCC--CCCcHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHH-----------Hhcc-CCHHHHHHH
Confidence 999999843 35568999999999999999999999999999999999999997 3332 378889999
Q ss_pred HHhhhhhhhhhhhcCCccceeeeeeecchhhhhhh--HHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCC
Q 004131 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQL--MWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDG 310 (772)
Q Consensus 233 i~~GaaAgvaaaF~APigGvlFalE~~~~~~~~~~--~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 310 (772)
++||+|||+||+||||++|++|++||+.++|+.+. ++++++++++++++.+.+. |+.+ .|+++.
T Consensus 178 i~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~~-----------G~~~--~f~~~~- 243 (465)
T 1ots_A 178 LATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFN-----------HEVA--LIDVGK- 243 (465)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHHS-----------CSCC--SSCCCC-
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc-----------CCCc--eeecCC-
Confidence 99999999999999999999999999999888766 8899999988888887542 3333 344442
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccchhhhHHHHHHHHHHHhcccccccCCCCCCCC
Q 004131 311 QEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKIIEACVISVITSVISFGLPLLRKCSPCPESD 390 (772)
Q Consensus 311 ~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~ 390 (772)
...+++.++++++++|++||++|++|++++...+++.++. .+..++++++++.+.+++++++.++.|+.
T Consensus 244 ~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~gl~~g~l~~~~P~~---------- 312 (465)
T 1ots_A 244 LSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRV-HGGNITKWVLMGGAIGGLCGLLGFVAPAT---------- 312 (465)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHCGGG----------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCchhHHHHHHHHHHHHHHHHHHhHhh----------
Confidence 3445678999999999999999999995544443333221 11122334578888999999999888865
Q ss_pred CCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCccC
Q 004131 391 LDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAVP 470 (772)
Q Consensus 391 ~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~ 470 (772)
.| .| | +.++.++++ ++++..++++++.|+++|++|+|+|+|
T Consensus 313 ----------lG-----------~G--~------------~~i~~~~~~----~~~~~~l~~~~~~K~~~t~lt~gsG~~ 353 (465)
T 1ots_A 313 ----------SG-----------GG--F------------NLIPIATAG----NFSMGMLVFIFVARVITTLLCFSSGAP 353 (465)
T ss_dssp ----------SS-----------CS--T------------THHHHHHHT----CSCHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred ----------cC-----------Ch--H------------HHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 12 22 3 335566652 456778888999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHHHHHHHH
Q 004131 471 AGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLISK 550 (772)
Q Consensus 471 gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia~~va~ 550 (772)
||+|+|++++||++|+++|.+++.++|..+.+|+.||++||+|+++|++|+|+|+++|++|+||++++++|+|+++++|+
T Consensus 354 GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~alvGmaa~~a~v~raPlt~ivlv~Eltg~~~~llpl~ia~~iA~ 433 (465)
T 1ots_A 354 GGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGAT 433 (465)
T ss_dssp SBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888877899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CcchHHHHHHhh
Q 004131 551 AVGDAF-SEGLYEEQAHLR 568 (772)
Q Consensus 551 ~v~~~~-~~~iy~~~l~~k 568 (772)
++++.+ ++++||.+++++
T Consensus 434 ~v~~~~~~~~iY~~~l~~~ 452 (465)
T 1ots_A 434 LLAQFTGGKPLYSAILART 452 (465)
T ss_dssp HHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHH
Confidence 999998 689999999865
No 4
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=100.00 E-value=5e-66 Score=579.45 Aligned_cols=412 Identities=27% Similarity=0.468 Sum_probs=336.4
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHH
Q 004131 75 KWF-FALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEI 153 (772)
Q Consensus 75 ~w~-~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev 153 (772)
||+ +++++|+++|+++.+|+..+++++++++....+. ....+..|+.++.++.+++++++++++++.|+++|||||||
T Consensus 19 ~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v 97 (446)
T 4ene_A 19 AILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT-ADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEI 97 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccchHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHH
Confidence 454 8899999999999999999999999988764322 12233344445556667788889999999999999999999
Q ss_pred HHHHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhh-hH
Q 004131 154 KGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRR-DL 232 (772)
Q Consensus 154 ~~~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r-~l 232 (772)
+++++|. ++...+|+++.|++++++++++|+|+|||||++|+||++|++++| ++|. +++|+| ++
T Consensus 98 ~~~l~~~--~~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~-----------~~~~--~~~~~r~~l 162 (446)
T 4ene_A 98 EGALEDQ--RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL--KGDEARHTL 162 (446)
T ss_dssp HHHHHTC--SCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC--CSHHHHHHH
T ss_pred HHHHhCC--CccchHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHH-----------HcCC--CHHHHHHHH
Confidence 9999974 234458999999999999999999999999999999999999997 3443 556676 99
Q ss_pred HHhhhhhhhhhhhcCCccceeeeeeecchhhhh--hhHHHHHHHHHHHHHHHHHhhhhccCCcccccCCCceEEEecCCC
Q 004131 233 VTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRS--QLMWRVFFTSAIVAVVVRSAMGWCKSGKCGHFGSGGFIIWDISDG 310 (772)
Q Consensus 233 i~~GaaAgvaaaF~APigGvlFalE~~~~~~~~--~~~~~~~~~~~va~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 310 (772)
++||+|||+||+||||++|++|++||+.++|+. +.++++++++++++++.+.+. ++++ .|+++.
T Consensus 163 l~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~~-----------g~~~--~~~~~~- 228 (446)
T 4ene_A 163 LATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFN-----------HEVA--LIDVGK- 228 (446)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHHHHHHTT-----------TTCC--SCCCCC-
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHc-----------CCCc--eeecCC-
Confidence 999999999999999999999999999887766 568899999999888887642 3333 345542
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCccch-hhhHHHHHHHHHHHhcccccccCCCCCCC
Q 004131 311 QEDYSFEELLPMAVIGVIGGLLGALFNQLTLYMTSWRRNYLHKKGNRVKI-IEACVISVITSVISFGLPLLRKCSPCPES 389 (772)
Q Consensus 311 ~~~~~~~~l~~~~~lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~c~~~~~~ 389 (772)
...+++.++++++++|++||++|.+|++++...+++.+++ ++.++.|. +.+.+++++++++.++.|..
T Consensus 229 ~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~g~l~~~~p~~--------- 297 (446)
T 4ene_A 229 LSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRV--HGGNITKWVLMGGAIGGLCGLLGFVAPAT--------- 297 (446)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHCGGG---------
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHHHHHHHHhHhh---------
Confidence 3446788999999999999999999995544443332222 12233343 34456677788888877765
Q ss_pred CCCCCCCCCCCCCCCCccccccccCCCccchhhhhhccCcHHHHHHhhcccCCCcchHHHHHHHHHHHHHHHHHHhcCcc
Q 004131 390 DLDSGIECPRPPGMYGNYVNFYCSKDKEYNDLATIFFNTQDDAIRNLFSAKTIHEYSAQSLLTFLVMFYTLAVVTFGIAV 469 (772)
Q Consensus 390 ~~~~~~~~~~~~g~~g~~~~~~c~~g~~y~~la~l~~~~~~~~i~~l~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~ 469 (772)
.| .||+. ++.+++ +++++..|+++++.|+++|++|+|+|+
T Consensus 298 -----------~G-------------~G~~~------------i~~~~~----~~~~~~~L~~~~~~K~~~t~lt~gsG~ 337 (446)
T 4ene_A 298 -----------SG-------------GGFNL------------IPIATA----GNFSMGMLVFIFVARVITTLLCFSSGA 337 (446)
T ss_dssp -----------SS-------------CCSTH------------HHHHHT----TCSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -----------cC-------------CcHHH------------HHHHHc----CCchHHHHHHHHHHHHHHHHHHHccCC
Confidence 12 22433 444443 346677888999999999999999999
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHhhhhhhccccchhHHhHHHHHhcCCcchHHHHHHHHHHH
Q 004131 470 PAGQFVPGIMIGSTYGRLVGMFVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKFLPLIMLVLLIS 549 (772)
Q Consensus 470 ~gG~f~P~l~iGa~~G~l~g~~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E~Tg~~~~l~pimia~~va 549 (772)
|||+|+|++++||++|+++|.+++.++|..+.+|+.||++||+|+++|++|+|+|+++|++|+||++++++|+|+++++|
T Consensus 338 ~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~~~~aPlt~~vl~~Eltg~~~~~lpl~ia~~ia 417 (446)
T 4ene_A 338 PGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGA 417 (446)
T ss_dssp SSBSHHHHHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHCCGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHCChhHHHHHHHHHHHH
Confidence 99999999999999999999999998887789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc-CcchHHHHHHh
Q 004131 550 KAVGDAF-SEGLYEEQAHL 567 (772)
Q Consensus 550 ~~v~~~~-~~~iy~~~l~~ 567 (772)
+++++.+ ++++||.++++
T Consensus 418 ~~v~~~~~~~~iY~~~l~r 436 (446)
T 4ene_A 418 TLLAQFTGGKPLYSAILAR 436 (446)
T ss_dssp HHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHH
Confidence 9999999 78999998865
No 5
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.85 E-value=4.1e-21 Score=198.91 Aligned_cols=181 Identities=18% Similarity=0.311 Sum_probs=124.6
Q ss_pred CCCCCCchhhhhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccc
Q 004131 571 PLLESRPKYKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVD 650 (772)
Q Consensus 571 p~L~~~~~~~l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~ 650 (772)
|.|.+... ...+++|+|+|+++ ++++.+++++.++.++|.++++++|||||++ ++++++|+|+++||++++....
T Consensus 1 P~L~~~~~-~~~~~~v~diMt~~-vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~--~~~~LvGiIt~~dl~~~l~~~~- 75 (250)
T 2d4z_A 1 PELSWSSA-NKYNIQVGDIMVRD-VTSIASTSTYGDLLHVLRQTKLKFFPFVDTP--DTNTLLGSIDRTEVEGLLQRRI- 75 (250)
T ss_dssp --CCCCCC-CCSSCBTTSSSBSS-CCCEETTCBHHHHHHHHHHCCCSEEEEESCT--TTCBEEEEEEHHHHHHHHHHHH-
T ss_pred CCCCCCCc-ccCCCChHHhcCCC-CeEECCCCCHHHHHHHHHhcCCCEEEEEecC--CCCeEEEEEEHHHHHHHHHHhh-
Confidence 56666655 66789999999999 9999999999999999999999999999873 1268999999999998876542
Q ss_pred cCCCCCCCC-----CC-----C------CCCCccccccc---------------------------------------cc
Q 004131 651 FQHSPLPCD-----TR-----G------GSKPISHSFSE---------------------------------------FV 675 (772)
Q Consensus 651 ~~~~~~~~~-----~~-----~------~~~~~~~~~~~---------------------------------------~~ 675 (772)
....+.... .. . +.++. ..+.. +.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 154 (250)
T 2d4z_A 76 SAYRRQPAAAAEADEEGRNGETGASFTGEAESS-FAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQ 154 (250)
T ss_dssp HTTSSSCCCCCCBCCC----------------------------------------------------------------
T ss_pred hhhhhhhhhhhcccccccccccccccccCCcce-eeeccccccccccccCccccCCcccCCccccccccccccccccccc
Confidence 110000000 00 0 00000 00000 00
Q ss_pred c--ccCCCCCCcccccCCccc--------ccccccccc-cccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEE
Q 004131 676 K--PASSKGLSIDDIHLSSDD--------MEMYIDLGP-FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIG 744 (772)
Q Consensus 676 ~--~~~~~~~~v~di~~~~~~--------~~~~idl~~-~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvG 744 (772)
. ....+..+..++++..++ ++..+|+++ +|+++|++|.+++|+.+|+++|+++|++|+||+++ |+++|
T Consensus 155 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~-GrLVG 233 (250)
T 2d4z_A 155 KKQKGTGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-GKLVG 233 (250)
T ss_dssp ------------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEE
T ss_pred cccccccccCcccccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC-CEEEE
Confidence 0 000001112223333332 567788875 79999999999999999999999999999999986 99999
Q ss_pred EEeHhhhhhHhcCC
Q 004131 745 LITRKDLLIEDGED 758 (772)
Q Consensus 745 IITr~DLl~~~~~~ 758 (772)
||||+||++++.+.
T Consensus 234 IVTrkDl~kai~~~ 247 (250)
T 2d4z_A 234 VVALAEIQAAIEGS 247 (250)
T ss_dssp EEEHHHHHHHHHC-
T ss_pred EEEHHHHHHHHHHH
Confidence 99999999998653
No 6
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.75 E-value=2.2e-18 Score=168.12 Aligned_cols=150 Identities=16% Similarity=0.230 Sum_probs=113.2
Q ss_pred hhhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCC
Q 004131 580 KMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (772)
Q Consensus 580 ~l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~ 659 (772)
.+++++|+|+|+++ ++++++++++.++++.|.+++++++||+|++ ++++|+||.+|+++.+.........
T Consensus 14 ~l~~~~V~diM~~~-v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~----g~lvGiit~~Dll~~~~~~~~~~~~----- 83 (170)
T 4esy_A 14 AIRQVPIRDILTSP-VVTVREDDTLDAVAKTMLEHQIGCAPVVDQN----GHLVGIITESDFLRGSIPFWIYEAS----- 83 (170)
T ss_dssp HHHTSBGGGGCCSC-CCCEETTSBHHHHHHHHHHTTCSEEEEECTT----SCEEEEEEGGGGGGGTCCTTHHHHH-----
T ss_pred HHcCCCHHHhcCCC-CcEECCcCcHHHHHHHHHHcCCeEEEEEcCC----ccEEEEEEHHHHHHHHhhccccchh-----
Confidence 46789999999999 9999999999999999999999999999986 8999999999997643221100000
Q ss_pred CCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 004131 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (772)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~ 739 (772)
... . ......+.. ...+......++++|++++++|++++++.+|.++|.+++++++||+|+
T Consensus 84 ---------~~~---~-----~~~~~~~~~-~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~- 144 (170)
T 4esy_A 84 ---------EIL---S-----RAIPAPEVE-HLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD- 144 (170)
T ss_dssp ---------HHH---T-----TTSCHHHHH-HHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET-
T ss_pred ---------hhh---h-----hccchhhHH-hhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC-
Confidence 000 0 000000000 000011234567789999999999999999999999999999999996
Q ss_pred CeEEEEEeHhhhhhHhcCC
Q 004131 740 SRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 740 g~lvGIITr~DLl~~~~~~ 758 (772)
|+++||||++||++++.++
T Consensus 145 g~lvGivt~~Dil~~l~~~ 163 (170)
T 4esy_A 145 GVPVGIVTRRDLLKLLLLE 163 (170)
T ss_dssp TEEEEEEEHHHHTTTSCCC
T ss_pred CEEEEEEEHHHHHHHHHhc
Confidence 9999999999999988654
No 7
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.72 E-value=2.8e-17 Score=156.25 Aligned_cols=127 Identities=18% Similarity=0.253 Sum_probs=110.6
Q ss_pred hhhccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCC
Q 004131 580 KMRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (772)
Q Consensus 580 ~l~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~ 657 (772)
.+...+|+|+|++ + ++++++++++.++.+.|.+++++.+||+|++. ++++|+|+.+|+++.+....
T Consensus 19 ~l~~~~v~diM~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~---~~lvGivt~~dl~~~~~~~~-------- 86 (148)
T 3lv9_A 19 EFEEKKIREIMVPRTD-MVCIYESDSEEKILAILKEEGVTRYPVCRKNK---DDILGFVHIRDLYNQKINEN-------- 86 (148)
T ss_dssp GGGTCBGGGTSEETTT-CCCEETTCCHHHHHHHHHHSCCSEEEEESSST---TSEEEEEEHHHHHHHHHHHS--------
T ss_pred ccCCCCHHHccccHHH-eEEECCCCCHHHHHHHHHHCCCCEEEEEcCCC---CcEEEEEEHHHHHHHHhcCC--------
Confidence 3568899999998 8 99999999999999999999999999998741 58999999999988754331
Q ss_pred CCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEec
Q 004131 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (772)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd 737 (772)
..+++++| +++.++++++++.+++++|.+.+.+++||+|
T Consensus 87 ----------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd 125 (148)
T 3lv9_A 87 ----------------------------------------KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVD 125 (148)
T ss_dssp ----------------------------------------CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred ----------------------------------------CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe
Confidence 01244558 8889999999999999999999999999999
Q ss_pred CCCeEEEEEeHhhhhhHhcCCC
Q 004131 738 RASRVIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~~~ 759 (772)
++|+++|+||++|+++++.++.
T Consensus 126 ~~g~~~Giit~~dil~~l~~~i 147 (148)
T 3lv9_A 126 EYGGTSGVVTIEDILEEIVGEI 147 (148)
T ss_dssp TTSSEEEEEEHHHHHHHHHHTC
T ss_pred CCCCEEEEEEHHHHHHHHhCcC
Confidence 9999999999999999887653
No 8
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.72 E-value=3.5e-17 Score=149.81 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=107.1
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCC
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~ 663 (772)
.+++|+|+++ +.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.+.+....
T Consensus 1 ~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----~~~~G~vt~~dl~~~~~~~~-------------- 61 (122)
T 3kpb_A 1 TLVKDILSKP-PITAHSNISIMEAAKILIKHNINHLPIVDEH----GKLVGIITSWDIAKALAQNK-------------- 61 (122)
T ss_dssp CBHHHHCCSC-CCCEETTSBHHHHHHHHHHHTCSCEEEECTT----SBEEEEECHHHHHHHHHTTC--------------
T ss_pred CchHHhhCCC-CEEeCCCCcHHHHHHHHHHcCCCeEEEECCC----CCEEEEEEHHHHHHHHHhcc--------------
Confidence 3789999998 9999999999999999999999999999976 89999999999988764322
Q ss_pred CCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 004131 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (772)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lv 743 (772)
.+++++|++++.++++++++.+++++|.+.+.+++||+|++|+++
T Consensus 62 -----------------------------------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~ 106 (122)
T 3kpb_A 62 -----------------------------------KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVV 106 (122)
T ss_dssp -----------------------------------CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEE
T ss_pred -----------------------------------cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEE
Confidence 124455889999999999999999999999999999999999999
Q ss_pred EEEeHhhhhhHhcCC
Q 004131 744 GLITRKDLLIEDGED 758 (772)
Q Consensus 744 GIITr~DLl~~~~~~ 758 (772)
|+||++|+++++.++
T Consensus 107 Givt~~dl~~~l~~~ 121 (122)
T 3kpb_A 107 GIVTSEDISRLFGGK 121 (122)
T ss_dssp EEEEHHHHHHHHC--
T ss_pred EEEeHHHHHHHhhcC
Confidence 999999999987653
No 9
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.71 E-value=2.8e-17 Score=152.98 Aligned_cols=127 Identities=19% Similarity=0.154 Sum_probs=106.1
Q ss_pred ccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCC
Q 004131 583 QMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (772)
Q Consensus 583 ~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~ 660 (772)
+++|+|+|++ + ++++++++++.++++.|.+++++.+||+|++ +++++|+|+.+|+++.+.+..
T Consensus 1 ~~~v~~iM~~~~~-~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~---~~~lvGivt~~dl~~~~~~~~----------- 65 (130)
T 3hf7_A 1 KVSVNDIMVPRNE-IVGIDINDDWKSIVRQLTHSPHGRIVLYRDS---LDDAISMLRVREAYRLMTEKK----------- 65 (130)
T ss_dssp CCBHHHHSEEGGG-CCEEETTSCHHHHHHHHHTCSSSEEEEESSS---GGGEEEEEEHHHHHHHHTSSS-----------
T ss_pred CcCHHHhCccHHH-EEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC---CCcEEEEEEHHHHHHHHhccC-----------
Confidence 3689999974 5 8999999999999999999999999999753 279999999999998764321
Q ss_pred CCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 004131 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (772)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g 740 (772)
.. ....++++| +++.++++++++.+++++|.+.+.+++||+|++|
T Consensus 66 -----------------------~~-----------~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g 110 (130)
T 3hf7_A 66 -----------------------EF-----------TKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG 110 (130)
T ss_dssp -----------------------CC-----------CHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTS
T ss_pred -----------------------cc-----------chhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCC
Confidence 00 012345557 6788999999999999999999999999999889
Q ss_pred eEEEEEeHhhhhhHhcCCC
Q 004131 741 RVIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 741 ~lvGIITr~DLl~~~~~~~ 759 (772)
+++|+||++|+++++.++.
T Consensus 111 ~lvGiit~~Dil~~l~g~i 129 (130)
T 3hf7_A 111 DIQGLVTVEDILEEIVGDF 129 (130)
T ss_dssp CEEEEEEHHHHHHHHHC--
T ss_pred CEEEEeeHHHHHHHHhCCC
Confidence 9999999999999987654
No 10
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.71 E-value=3.1e-17 Score=152.42 Aligned_cols=126 Identities=19% Similarity=0.250 Sum_probs=103.8
Q ss_pred hhccchhhhccCC-ceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCC
Q 004131 581 MRQMTAKEACGAQ-KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (772)
Q Consensus 581 l~~l~v~diM~~~-~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~ 659 (772)
+++.+++|+|+++ +++++++++++.++.+.|.+++++.+||+|++ .++++|+|+.+|+++.+.++.
T Consensus 3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~---~~~~~Givt~~dl~~~~~~~~---------- 69 (130)
T 3i8n_A 3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQ---KDNIIGFVHRLELFKMQQSGS---------- 69 (130)
T ss_dssp ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSS---TTCEEEECCHHHHHHHHHTTT----------
T ss_pred cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC---CCcEEEEEEHHHHHHHHhcCC----------
Confidence 5678999999952 16789999999999999999999999999863 168999999999998764332
Q ss_pred CCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 004131 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (772)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~ 739 (772)
...+++++| +++.++++++++.+++++|.+.+.+++||+|++
T Consensus 70 -------------------------------------~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~ 111 (130)
T 3i8n_A 70 -------------------------------------GQKQLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEY 111 (130)
T ss_dssp -------------------------------------TTSBHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTT
T ss_pred -------------------------------------CcCCHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCC
Confidence 001244558 457899999999999999999999999999998
Q ss_pred CeEEEEEeHhhhhhHhcC
Q 004131 740 SRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 740 g~lvGIITr~DLl~~~~~ 757 (772)
|+++|+||++|+++++.+
T Consensus 112 g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 112 GTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp SCEEEEEEHHHHHHHHHT
T ss_pred CCEEEEEEHHHHHHHHcC
Confidence 999999999999998754
No 11
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.71 E-value=5.2e-17 Score=158.83 Aligned_cols=130 Identities=18% Similarity=0.255 Sum_probs=108.6
Q ss_pred hhhccchhhhcc--CCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCC
Q 004131 580 KMRQMTAKEACG--AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (772)
Q Consensus 580 ~l~~l~v~diM~--~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~ 657 (772)
.+..++|+|+|+ ++ ++++++++++.++++.|.+++++.+||+|++. ++++|+|+.+|+++.+.+..
T Consensus 38 ~l~~~~v~diM~~~~~-~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~---~~lvGivt~~dl~~~~~~~~-------- 105 (172)
T 3lhh_A 38 RLDERTISSLMVPRSD-IVFLDLNLPLDANLRTVMQSPHSRFPVCRNNV---DDMVGIISAKQLLSESIAGE-------- 105 (172)
T ss_dssp -----CTTTTSEEGGG-CCCEETTSCHHHHHHHHHTCCCSEEEEESSST---TSEEEEEEHHHHHHHHHTTC--------
T ss_pred ccCCCCHHHhCccHHH-eEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC---CeEEEEEEHHHHHHHHhhcC--------
Confidence 356789999999 66 89999999999999999999999999998631 68999999999998754321
Q ss_pred CCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEec
Q 004131 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (772)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd 737 (772)
..+++++| +++.++++++++.+++++|.+.+.+++||+|
T Consensus 106 ----------------------------------------~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd 144 (172)
T 3lhh_A 106 ----------------------------------------RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD 144 (172)
T ss_dssp ----------------------------------------CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC
T ss_pred ----------------------------------------cccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 12345569 8899999999999999999999999999999
Q ss_pred CCCeEEEEEeHhhhhhHhcCCCccc
Q 004131 738 RASRVIGLITRKDLLIEDGEDSTTV 762 (772)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~~~~~~ 762 (772)
++|+++|+||++|+++++.++..++
T Consensus 145 ~~g~lvGiit~~Dil~~l~~~~~de 169 (172)
T 3lhh_A 145 EYGDLKGLVTLQDMMDALTGEFFQE 169 (172)
T ss_dssp TTSCEEEEEEHHHHHHHHHTTCC--
T ss_pred CCCCEEEEeeHHHHHHHHhCCCccc
Confidence 9999999999999999998876543
No 12
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.70 E-value=1.8e-17 Score=155.42 Aligned_cols=128 Identities=23% Similarity=0.315 Sum_probs=103.9
Q ss_pred ccchhhhcc--CCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCC
Q 004131 583 QMTAKEACG--AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (772)
Q Consensus 583 ~l~v~diM~--~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~ 660 (772)
+++|+|+|+ ++ ++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+||++.+.+..
T Consensus 2 ~~~v~~iM~~~~~-~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~---~~~~vGivt~~dl~~~~~~~~----------- 66 (136)
T 3lfr_A 2 DLQVRDIMVPRSQ-MISIKATQTPREFLPAVIDAAHSRYPVIGES---HDDVLGVLLAKDLLPLILKAD----------- 66 (136)
T ss_dssp -CBHHHHSEEGGG-CCCEETTCCHHHHHHHHHHHCCSEEEEESSS---TTCEEEEEEGGGGGGGGGSSS-----------
T ss_pred CCChHhccccHHH-EEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC---CCcEEEEEEHHHHHHHHHhcc-----------
Confidence 578999999 56 8999999999999999999999999999874 158999999999976543211
Q ss_pred CCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 004131 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (772)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g 740 (772)
....+++++|++ +.++++++++.+++++|.+.+.+++||+|++|
T Consensus 67 -----------------------------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g 110 (136)
T 3lfr_A 67 -----------------------------------GDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYG 110 (136)
T ss_dssp -----------------------------------GGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTS
T ss_pred -----------------------------------CCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC
Confidence 001235556866 89999999999999999999999999999989
Q ss_pred eEEEEEeHhhhhhHhcCCCcc
Q 004131 741 RVIGLITRKDLLIEDGEDSTT 761 (772)
Q Consensus 741 ~lvGIITr~DLl~~~~~~~~~ 761 (772)
+++|+||++|+++++.++..+
T Consensus 111 ~lvGiit~~Dil~~l~~~~~d 131 (136)
T 3lfr_A 111 GVAGLVTIEDVLEQIVGDIED 131 (136)
T ss_dssp CEEEEEEHHHHHTTC------
T ss_pred CEEEEEEHHHHHHHHhCCCcC
Confidence 999999999999998876654
No 13
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.70 E-value=7.8e-17 Score=149.98 Aligned_cols=127 Identities=19% Similarity=0.316 Sum_probs=109.9
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCC
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~ 661 (772)
++++++|+|+++ +.++++++++.++.+.|.+++++.+||+| + ++++|+|+.+|+...+.+.. .
T Consensus 2 ~~~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~----~~~~Givt~~dl~~~~~~~~--~--------- 64 (133)
T 2ef7_A 2 EEEIVKEYMKTQ-VISVTKDAKLNDIAKVMTEKNIGSVIVVD-G----NKPVGIITERDIVKAIGKGK--S--------- 64 (133)
T ss_dssp CCCBGGGTSBCS-CCEEETTCBHHHHHHHHHHHTCSEEEEEE-T----TEEEEEEEHHHHHHHHHTTC--C---------
T ss_pred CcccHHHhccCC-CEEECCCCcHHHHHHHHHhcCCCEEEEEE-C----CEEEEEEcHHHHHHHHhcCC--C---------
Confidence 568999999998 99999999999999999999999999999 5 89999999999987664321 0
Q ss_pred CCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 004131 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (772)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~ 741 (772)
....++++|++++.++++++++.++.+.|.+.+.+++||+|++|+
T Consensus 65 -----------------------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~ 109 (133)
T 2ef7_A 65 -----------------------------------LETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGN 109 (133)
T ss_dssp -----------------------------------TTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred -----------------------------------cccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCe
Confidence 012345568889999999999999999999999999999998899
Q ss_pred EEEEEeHhhhhhHhcCCCc
Q 004131 742 VIGLITRKDLLIEDGEDST 760 (772)
Q Consensus 742 lvGIITr~DLl~~~~~~~~ 760 (772)
++|+||++|+++++.++..
T Consensus 110 ~~Giit~~dll~~~~~~~~ 128 (133)
T 2ef7_A 110 LKGIISIRDITRAIDDMFE 128 (133)
T ss_dssp EEEEEEHHHHHHHHHHHC-
T ss_pred EEEEEEHHHHHHHHHHHHH
Confidence 9999999999998876543
No 14
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.70 E-value=2.9e-17 Score=152.54 Aligned_cols=124 Identities=20% Similarity=0.316 Sum_probs=104.1
Q ss_pred hccchhhhcc--CCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCC
Q 004131 582 RQMTAKEACG--AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (772)
Q Consensus 582 ~~l~v~diM~--~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~ 659 (772)
.+++|+|+|+ ++ ++++++++++.++.+.|.+++++.+||+|++ .++++|+|+.+|+++.+.+.
T Consensus 3 ~~~~v~diM~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~---~~~~~Givt~~dl~~~~~~~----------- 67 (129)
T 3jtf_A 3 AERTVADIMVPRSR-MDLLDISQPLPQLLATIIETAHSRFPVYEDD---RDNIIGILLAKDLLRYMLEP----------- 67 (129)
T ss_dssp -CCBHHHHCEEGGG-CCCEETTSCHHHHHHHHHHSCCSEEEEESSS---TTCEEEEEEGGGGGGGGTCT-----------
T ss_pred CCCCHHHhCccHHH-eEEECCCCCHHHHHHHHHHcCCCEEEEEcCC---CCcEEEEEEHHHHHhHhccC-----------
Confidence 4689999999 56 8899999999999999999999999999873 16899999999997543211
Q ss_pred CCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 004131 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (772)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~ 739 (772)
..+++++|.+ +.++++++++.+++++|.+.+.+++||+|++
T Consensus 68 --------------------------------------~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~ 108 (129)
T 3jtf_A 68 --------------------------------------ALDIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDEH 108 (129)
T ss_dssp --------------------------------------TSCGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC-
T ss_pred --------------------------------------CcCHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCC
Confidence 0124445754 7899999999999999999999999999999
Q ss_pred CeEEEEEeHhhhhhHhcCCC
Q 004131 740 SRVIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 740 g~lvGIITr~DLl~~~~~~~ 759 (772)
|+++|+||++|+++++.++.
T Consensus 109 g~~~Giit~~Dil~~l~gei 128 (129)
T 3jtf_A 109 GGISGLVTMEDVLEQIVGDI 128 (129)
T ss_dssp CCEEEEEEHHHHHHHHHHTC
T ss_pred CCEEEEEEHHHHHHHHhCCC
Confidence 99999999999999887653
No 15
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.70 E-value=3.7e-17 Score=156.52 Aligned_cols=129 Identities=17% Similarity=0.206 Sum_probs=109.1
Q ss_pred hhccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEE-eCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCC
Q 004131 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVI-DHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (772)
Q Consensus 581 l~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVV-d~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~ 657 (772)
+...+|+|+|++ + ++++++++++.++.+.|.+++++.+||+ |++ +++++|+|+.+|+++.+....
T Consensus 17 l~~~~v~~iM~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~---~~~lvGivt~~dl~~~~~~~~-------- 84 (153)
T 3oco_A 17 MNDKVASDVMVDRTS-MSVVDVDETIADALLLYLEEQYSRFPVTADND---KDKIIGYAYNYDIVRQARIDD-------- 84 (153)
T ss_dssp HHHCBHHHHSEEGGG-CCCEETTSBHHHHHHHHHHHCCSEEEEEETTE---EEEEEEEEEHHHHHHHHHHHT--------
T ss_pred cCCCEeeeEecchhh-eEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC---CCcEEEEEEHHHHHhHHhcCC--------
Confidence 567899999996 7 8999999999999999999999999999 542 279999999999998764331
Q ss_pred CCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEec
Q 004131 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (772)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd 737 (772)
..+++++| +++.++++++++.+++++|.+.+.+++||+|
T Consensus 85 ----------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd 123 (153)
T 3oco_A 85 ----------------------------------------KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID 123 (153)
T ss_dssp ----------------------------------------TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC
T ss_pred ----------------------------------------CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe
Confidence 02245568 8899999999999999999999999999999
Q ss_pred CCCeEEEEEeHhhhhhHhcCCCccc
Q 004131 738 RASRVIGLITRKDLLIEDGEDSTTV 762 (772)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~~~~~~ 762 (772)
++|+++|+||++|+++++.++..++
T Consensus 124 ~~g~~vGivt~~dil~~l~~~~~de 148 (153)
T 3oco_A 124 EYGGTSGIITDKDVYEELFGNLRDE 148 (153)
T ss_dssp TTSCEEEEECHHHHHHHHHC-----
T ss_pred CCCCEEEEeeHHHHHHHHhccCCCc
Confidence 9899999999999999998876543
No 16
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.69 E-value=4.8e-17 Score=150.66 Aligned_cols=125 Identities=18% Similarity=0.051 Sum_probs=108.2
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCC
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~ 661 (772)
..++++|+|.++ +.++++++++.++.+.|.+++++.+||+|+ ++++|+|+.+|+.+.+.+..
T Consensus 3 ~s~~v~~~m~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~Givt~~dl~~~~~~~~------------ 64 (128)
T 3gby_A 3 ASVTFSYLAETD-YPVFTLGGSTADAARRLAASGCACAPVLDG-----ERYLGMVHLSRLLEGRKGWP------------ 64 (128)
T ss_dssp TTCBGGGGCBCC-SCCEETTSBHHHHHHHHHHHTCSEEEEEET-----TEEEEEEEHHHHHTTCSSSC------------
T ss_pred cceEHHHhhcCC-cceECCCCCHHHHHHHHHHCCCcEEEEEEC-----CEEEEEEEHHHHHHHHhhCC------------
Confidence 368999999999 999999999999999999999999999987 68999999999976432211
Q ss_pred CCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 004131 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (772)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~ 741 (772)
.....++++|++++.++++++++.+++++|.+.+.+++||+|++|+
T Consensus 65 ----------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~ 110 (128)
T 3gby_A 65 ----------------------------------TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGR 110 (128)
T ss_dssp ----------------------------------CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCB
T ss_pred ----------------------------------cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCC
Confidence 0002345569999999999999999999999999999999998899
Q ss_pred EEEEEeHhhhhhHhcCC
Q 004131 742 VIGLITRKDLLIEDGED 758 (772)
Q Consensus 742 lvGIITr~DLl~~~~~~ 758 (772)
++|+||++|+++++.+.
T Consensus 111 ~~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 111 YEGVVSRKRILGFLAER 127 (128)
T ss_dssp EEEEEEHHHHHHHHHTT
T ss_pred EEEEEEHHHHHHHHHhh
Confidence 99999999999988654
No 17
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.69 E-value=1e-16 Score=155.41 Aligned_cols=138 Identities=12% Similarity=0.183 Sum_probs=114.7
Q ss_pred CCCchhhhhccchhhhccC---CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccc
Q 004131 574 ESRPKYKMRQMTAKEACGA---QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVD 650 (772)
Q Consensus 574 ~~~~~~~l~~l~v~diM~~---~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~ 650 (772)
.......+..++|+|+|++ + ++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+.+.+....
T Consensus 14 ~~~~~~~l~~~~v~dim~~~~~~-~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----~~~~Givt~~dl~~~~~~~~- 87 (165)
T 3fhm_A 14 RENLYFQGMATFVKDLLDRKGRD-VVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD----GVVLGIFTERDLVKAVAGQG- 87 (165)
T ss_dssp --CCCCSSSSCBHHHHHHHHCSC-CCEECTTSBHHHHHHHHHHHTCSEEEEECTT----SCEEEEEEHHHHHHHHHHHG-
T ss_pred cchhhHhhhhcCHHHHhccCCCC-CeEECCCCCHHHHHHHHHHcCCCEEEEEcCC----CeEEEEEEHHHHHHHHHhcC-
Confidence 3344556788999999995 6 8999999999999999999999999999976 89999999999998765431
Q ss_pred cCCCCCCCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCC
Q 004131 651 FQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGL 730 (772)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~gl 730 (772)
.. ....+++++|++++.++++++++.+++++|.+.+.
T Consensus 88 ~~-------------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~ 124 (165)
T 3fhm_A 88 AA-------------------------------------------SLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRF 124 (165)
T ss_dssp GG-------------------------------------------GGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTC
T ss_pred Cc-------------------------------------------cccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCC
Confidence 00 00123455699999999999999999999999999
Q ss_pred CEEEEecCCCeEEEEEeHhhhhhHhcCCCcc
Q 004131 731 RHIFVVPRASRVIGLITRKDLLIEDGEDSTT 761 (772)
Q Consensus 731 r~lpVVd~~g~lvGIITr~DLl~~~~~~~~~ 761 (772)
+++||+|+ |+++|+||++|+++++.++..+
T Consensus 125 ~~lpVvd~-g~~~Giit~~dil~~~~~~~~~ 154 (165)
T 3fhm_A 125 RHVPVEEN-GRLAGIISIGDVVKARIGEIEA 154 (165)
T ss_dssp SEEEEEET-TEEEEEEEHHHHHHHTTCC---
T ss_pred CEEEEEEC-CEEEEEEEHHHHHHHHHHHHHH
Confidence 99999999 9999999999999998876654
No 18
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.69 E-value=2.2e-16 Score=148.69 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=106.2
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCc--EEEEeeeHHHHHHHHhcccccCCCCCCCCC
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGER--LVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~--~lvGiItr~dL~~~L~~~~~~~~~~~~~~~ 660 (772)
.++++|+|+++ +.++++++++.++++.|.+++++.+||+|++ + +++|+|+++|+.+.+.+.. .
T Consensus 4 ~~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----~~~~~~Givt~~dl~~~~~~~~--~-------- 68 (141)
T 2rih_A 4 AIRTSELLKRP-PVSLPETATIREVATELAKNRVGLAVLTARD----NPKRPVAVVSERDILRAVAQRL--D-------- 68 (141)
T ss_dssp -CBGGGGCCSC-CEEEETTCBHHHHHHHHHHHTCSEEEEEETT----EEEEEEEEEEHHHHHHHHHTTC--C--------
T ss_pred ceEHHHHhcCC-CeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC----CcceeEEEEEHHHHHHHHhcCC--C--------
Confidence 47899999998 9999999999999999999999999999985 6 9999999999988654321 0
Q ss_pred CCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 004131 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (772)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g 740 (772)
...+++++|++++.+++++ ++.+++++|.+.+.+++||+|++|
T Consensus 69 ------------------------------------~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g 111 (141)
T 2rih_A 69 ------------------------------------LDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNG 111 (141)
T ss_dssp ------------------------------------TTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTS
T ss_pred ------------------------------------CCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCC
Confidence 0123455699999999999 999999999999999999999889
Q ss_pred eEEEEEeHhhhhhHhc
Q 004131 741 RVIGLITRKDLLIEDG 756 (772)
Q Consensus 741 ~lvGIITr~DLl~~~~ 756 (772)
+++|+||++|++++..
T Consensus 112 ~~~Giit~~dll~~~~ 127 (141)
T 2rih_A 112 ELVGVLSIRDLCFERA 127 (141)
T ss_dssp CEEEEEEHHHHHSCHH
T ss_pred cEEEEEEHHHHHHHHH
Confidence 9999999999988654
No 19
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.68 E-value=3.5e-17 Score=151.44 Aligned_cols=123 Identities=21% Similarity=0.364 Sum_probs=102.2
Q ss_pred ccchhhhcc--CCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCC
Q 004131 583 QMTAKEACG--AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (772)
Q Consensus 583 ~l~v~diM~--~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~ 660 (772)
+++++|+|+ ++ ++++++++++.++.+.|.+++++.+||+|++. ++++|+|+.+|+++.+....
T Consensus 2 ~~~v~diM~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~---~~~vGivt~~dl~~~~~~~~----------- 66 (127)
T 3nqr_A 2 DQRVRDIMIPRSQ-MITLKRNQTLDECLDVIIESAHSRFPVISEDK---DHIEGILMAKDLLPFMRSDA----------- 66 (127)
T ss_dssp -CBHHHHSEEGGG-CCCEETTCCHHHHHHHHHHHCCSEEEEESSST---TCEEEEEEGGGGGGGGSTTC-----------
T ss_pred CcCHHHhcccHHH-eEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCC---CcEEEEEEHHHHHHHHhccC-----------
Confidence 578999999 45 88999999999999999999999999998741 58999999999976432211
Q ss_pred CCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 004131 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (772)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g 740 (772)
...+++++|.+ +.++++++++.+++++|.+.+.+++||+|++|
T Consensus 67 ------------------------------------~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g 109 (127)
T 3nqr_A 67 ------------------------------------EAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG 109 (127)
T ss_dssp ------------------------------------CCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTS
T ss_pred ------------------------------------CCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC
Confidence 01234555854 78999999999999999999999999999889
Q ss_pred eEEEEEeHhhhhhHhcC
Q 004131 741 RVIGLITRKDLLIEDGE 757 (772)
Q Consensus 741 ~lvGIITr~DLl~~~~~ 757 (772)
+++|+||++|+++++.+
T Consensus 110 ~~~Giit~~dll~~l~g 126 (127)
T 3nqr_A 110 GVSGLVTIEDILELIVG 126 (127)
T ss_dssp CEEEEEEHHHHHHHC--
T ss_pred CEEEEEEHHHHHHHHhC
Confidence 99999999999998754
No 20
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.68 E-value=7.5e-17 Score=155.21 Aligned_cols=128 Identities=14% Similarity=0.161 Sum_probs=105.9
Q ss_pred cchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCC
Q 004131 584 MTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (772)
Q Consensus 584 l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~ 661 (772)
.+++++|++ + ++++++++|+.++++.|.+++++++||+|++ ++++|+|+.+|+++.+.... ...
T Consensus 15 ~~~~~iM~P~~~-v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~----~~lvGiit~~Di~~~~~~~~-~~~-------- 80 (156)
T 3k6e_A 15 GQEETFLTPAKN-LAVLIDTHNADHATLLLSQMTYTRVPVVTDE----KQFVGTIGLRDIMAYQMEHD-LSQ-------- 80 (156)
T ss_dssp TTGGGGEEETTS-SCCEETTSBHHHHHHHHTTSSSSEEEEECC-----CBEEEEEEHHHHHHHHHHHT-CCH--------
T ss_pred ccHHHhCcchhH-eEEECCcCCHHHHHHHHHHcCCcEEEEEcCC----CcEEEEEEecchhhhhhhcc-ccc--------
Confidence 468899985 6 8999999999999999999999999999876 89999999999988765432 000
Q ss_pred CCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 004131 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (772)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~ 741 (772)
+.....+++++|++++.++++++++.+++++|.+.+ .+||||++|+
T Consensus 81 --------------------------------~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~ 126 (156)
T 3k6e_A 81 --------------------------------EIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGI 126 (156)
T ss_dssp --------------------------------HHHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSB
T ss_pred --------------------------------ccccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCE
Confidence 000123456679999999999999999999998765 5999999999
Q ss_pred EEEEEeHhhhhhHhcCCC
Q 004131 742 VIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 742 lvGIITr~DLl~~~~~~~ 759 (772)
++|+||++|+++++.+..
T Consensus 127 l~GiiT~~Dil~~~~~~~ 144 (156)
T 3k6e_A 127 FQGIITRKSILKAVNALL 144 (156)
T ss_dssp EEEEEEHHHHHHHHHHHS
T ss_pred EEEEEEHHHHHHHHHHHh
Confidence 999999999999886544
No 21
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.67 E-value=2.7e-16 Score=147.28 Aligned_cols=130 Identities=14% Similarity=0.202 Sum_probs=110.0
Q ss_pred hhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCC
Q 004131 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (772)
Q Consensus 581 l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~ 660 (772)
+...+++|+|+++ +.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.+.+..+. .
T Consensus 4 l~~~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----~~~~Givt~~dl~~~~~~~~-----~----- 68 (138)
T 2yzi_A 4 DMKAPIKVYMTKK-LLGVKPSTSVQEASRLMMEFDVGSLVVINDD----GNVVGFFTKSDIIRRVIVPG-----L----- 68 (138)
T ss_dssp CTTSBGGGTCBCC-CCEECTTSBHHHHHHHHHHHTCSEEEEECTT----SCEEEEEEHHHHHHHTTTTC-----C-----
T ss_pred hhhhhHHHHhcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcCC----CcEEEEEeHHHHHHHHHhcC-----C-----
Confidence 4678999999998 9999999999999999999999999999975 89999999999974221111 0
Q ss_pred CCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 004131 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (772)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g 740 (772)
.....++++|++++.++++++++.+++++|.+.+.+++ |+|++|
T Consensus 69 -----------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g 112 (138)
T 2yzi_A 69 -----------------------------------PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEG 112 (138)
T ss_dssp -----------------------------------CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETT
T ss_pred -----------------------------------cccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCC
Confidence 00123555699999999999999999999999999999 999779
Q ss_pred eEEEEEeHhhhhhHhcCCCcc
Q 004131 741 RVIGLITRKDLLIEDGEDSTT 761 (772)
Q Consensus 741 ~lvGIITr~DLl~~~~~~~~~ 761 (772)
+++|+||++|+++++.++...
T Consensus 113 ~~~Giit~~dil~~~~~~~~~ 133 (138)
T 2yzi_A 113 KIVGIFTLSDLLEASRRRLET 133 (138)
T ss_dssp EEEEEEEHHHHHHHHHCCSCC
T ss_pred CEEEEEEHHHHHHHHHHHHHh
Confidence 999999999999998876543
No 22
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.67 E-value=1.4e-16 Score=149.15 Aligned_cols=128 Identities=20% Similarity=0.358 Sum_probs=108.7
Q ss_pred hhhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHH-HHHHhcccccCCCCCCC
Q 004131 580 KMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHL-LVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 580 ~l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL-~~~L~~~~~~~~~~~~~ 658 (772)
.+.+.+++|+|+++ +.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+ ...+....
T Consensus 4 ~l~~~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----~~~~Givt~~dl~~~~~~~~~--------- 69 (138)
T 2p9m_A 4 TLKNIKVKDVMTKN-VITAKRHEGVVEAFEKMLKYKISSLPVIDDE----NKVIGIVTTTDIGYNLIRDKY--------- 69 (138)
T ss_dssp -CTTCBGGGTSBCS-CCCEETTSBHHHHHHHHHHHTCCEEEEECTT----CBEEEEEEHHHHHHHHTTTCC---------
T ss_pred ccccCCHHHhhcCC-ceEECCCCcHHHHHHHHHHCCCcEEEEECCC----CeEEEEEEHHHHHHHHHhhcc---------
Confidence 45678999999988 9999999999999999999999999999976 899999999999 77543211
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcC-----CCEE
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLG-----LRHI 733 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~g-----lr~l 733 (772)
.....++++|++++.++++++++.++.+.|.+.+ .+++
T Consensus 70 -------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l 112 (138)
T 2p9m_A 70 -------------------------------------TLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQL 112 (138)
T ss_dssp -------------------------------------CSSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEE
T ss_pred -------------------------------------cCCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEE
Confidence 0012345569999999999999999999999999 9999
Q ss_pred EEecCCCeEEEEEeHhhhhhHhcCC
Q 004131 734 FVVPRASRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 734 pVVd~~g~lvGIITr~DLl~~~~~~ 758 (772)
||+|++|+++|+||++|+++++.++
T Consensus 113 ~Vvd~~g~~~Giit~~dll~~~~~~ 137 (138)
T 2p9m_A 113 PVVDKNNKLVGIISDGDIIRTISKI 137 (138)
T ss_dssp EEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred EEECCCCeEEEEEEHHHHHHHHHhh
Confidence 9999889999999999999987653
No 23
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.67 E-value=2.1e-16 Score=150.34 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=112.9
Q ss_pred chhhhhccchhhhcc--CCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCC
Q 004131 577 PKYKMRQMTAKEACG--AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHS 654 (772)
Q Consensus 577 ~~~~l~~l~v~diM~--~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~ 654 (772)
....+..++++|+|+ ++ ++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++||.+.+.......
T Consensus 8 ~~~~l~~~~v~~im~~~~~-~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~----~~~~Givt~~dl~~~~~~~~~~~-- 80 (150)
T 3lqn_A 8 PKDEFQQIFVKDLMISSEK-VAHVQIGNGLEHALLVLVKSGYSAIPVLDPM----YKLHGLISTAMILDGILGLERIE-- 80 (150)
T ss_dssp CHHHHHHCBHHHHSEEGGG-SCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----CBEEEEEEHHHHHHHTBCSSSBC--
T ss_pred HHHhhhcCChhhcccCCCc-eEEECCCCcHHHHHHHHHHcCCcEEEEECCC----CCEEEEEEHHHHHHHHHhhcccc--
Confidence 345678899999999 46 8899999999999999999999999999976 89999999999988654321000
Q ss_pred CCCCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEE
Q 004131 655 PLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIF 734 (772)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lp 734 (772)
.+......+.++|++++.++++++++.+++++|.+.+. +|
T Consensus 81 --------------------------------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~ 120 (150)
T 3lqn_A 81 --------------------------------------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--IC 120 (150)
T ss_dssp --------------------------------------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EE
T ss_pred --------------------------------------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EE
Confidence 00011234666799999999999999999999999986 99
Q ss_pred EecCCCeEEEEEeHhhhhhHhcCCCc
Q 004131 735 VVPRASRVIGLITRKDLLIEDGEDST 760 (772)
Q Consensus 735 VVd~~g~lvGIITr~DLl~~~~~~~~ 760 (772)
|+|++|+++|+||++|+++++.++..
T Consensus 121 Vvd~~g~~~Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 121 AVNEDGYFEGILTRRAILKLLNKKVR 146 (150)
T ss_dssp EECTTCBEEEEEEHHHHHHHHHHHC-
T ss_pred EECCCCcEEEEEEHHHHHHHHHHHhH
Confidence 99988999999999999999876554
No 24
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.66 E-value=4e-16 Score=143.29 Aligned_cols=123 Identities=13% Similarity=0.190 Sum_probs=105.5
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCC
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~ 663 (772)
++++|+|+++ +.++++++++.++.+.|.+++++.+||+| + ++++|+|+++|+.+.+.+....
T Consensus 1 m~v~~~m~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~----~~~~G~it~~dl~~~~~~~~~~------------ 62 (125)
T 1pbj_A 1 MRVEDVMVTD-VDTIDITASLEDVLRNYVENAKGSSVVVK-E----GVRVGIVTTWDVLEAIAEGDDL------------ 62 (125)
T ss_dssp -CHHHHCBCS-CCEEETTCBHHHHHHHHHHHCCCEEEEEE-T----TEEEEEEEHHHHHHHHHHTCCT------------
T ss_pred CCHHHhcCCC-ceEECCCCcHHHHHHHHHHcCCCEEEEEe-C----CeeEEEEeHHHHHHHHhcCCcc------------
Confidence 4789999998 99999999999999999999999999999 5 8999999999998766433200
Q ss_pred CCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 004131 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (772)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lv 743 (772)
....++++|++++.++++++++.+++++|.+.+.+++||+|+ |+++
T Consensus 63 ---------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~ 108 (125)
T 1pbj_A 63 ---------------------------------AEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEII 108 (125)
T ss_dssp ---------------------------------TTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEE
T ss_pred ---------------------------------cccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEE
Confidence 012345568889999999999999999999999999999999 9999
Q ss_pred EEEeHhhhhhHhcCC
Q 004131 744 GLITRKDLLIEDGED 758 (772)
Q Consensus 744 GIITr~DLl~~~~~~ 758 (772)
|+||++|+++++.++
T Consensus 109 Gvit~~dl~~~l~~~ 123 (125)
T 1pbj_A 109 GVISATDILRAKMAK 123 (125)
T ss_dssp EEEEHHHHHHHHC--
T ss_pred EEEEHHHHHHHHHhc
Confidence 999999999987654
No 25
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.66 E-value=3.2e-16 Score=150.92 Aligned_cols=130 Identities=14% Similarity=0.167 Sum_probs=110.2
Q ss_pred hhhhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCC
Q 004131 579 YKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 579 ~~l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~ 658 (772)
..+..++|+|+|+++ + ++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+.+.+..+. .
T Consensus 12 ~~l~~~~v~~im~~~-~-~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~----~~~~Givt~~dl~~~~~~~~-----~--- 77 (159)
T 3fv6_A 12 DKLKKLQVKDFQSIP-V-VIHENVSVYDAICTMFLEDVGTLFVVDRD----AVLVGVLSRKDLLRASIGQQ-----E--- 77 (159)
T ss_dssp HHHTTCBGGGSCBCC-C-EEETTSBHHHHHHHHHHHTCSEEEEECTT----SCEEEEEEHHHHHHHHTSCS-----C---
T ss_pred HHHhhCCHHHHcCCC-E-EECCCCcHHHHHHHHHHCCCCEEEEEcCC----CcEEEEEeHHHHHHHhhccC-----c---
Confidence 356788999999976 5 89999999999999999999999999976 89999999999988653321 0
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVV 736 (772)
....+++++|++ ++.++++++++.+++++|.+.+.+++||+
T Consensus 78 -------------------------------------~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 120 (159)
T 3fv6_A 78 -------------------------------------LTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVI 120 (159)
T ss_dssp -------------------------------------TTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred -------------------------------------ccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEE
Confidence 001234556887 88999999999999999999999999999
Q ss_pred cCCC---eEEEEEeHhhhhhHhcCCC
Q 004131 737 PRAS---RVIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 737 d~~g---~lvGIITr~DLl~~~~~~~ 759 (772)
|++| +++|+||++|+++++.+..
T Consensus 121 d~~g~~~~~vGiit~~dil~~l~~~~ 146 (159)
T 3fv6_A 121 KDTDKGFEVIGRVTKTNMTKILVSLS 146 (159)
T ss_dssp EECSSSEEEEEEEEHHHHHHHHHHHH
T ss_pred eCCCcceeEEEEEEHHHHHHHHHHHh
Confidence 9977 9999999999999886543
No 26
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.66 E-value=1.8e-16 Score=150.68 Aligned_cols=142 Identities=23% Similarity=0.327 Sum_probs=108.8
Q ss_pred hccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCC
Q 004131 582 RQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (772)
Q Consensus 582 ~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~ 659 (772)
+.++++|+|++ + ++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+...+.... .
T Consensus 3 ~~~~v~~im~~~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----~~~~G~vt~~dl~~~~~~~~------~--- 68 (152)
T 4gqw_A 3 GVYTVGEFMTKKED-LHVVKPTTTVDEALELLVENRITGFPVIDED----WKLVGLVSDYDLLALDSGDS------T--- 68 (152)
T ss_dssp CCSBGGGTSEESTT-CCCBCTTSBHHHHHHHHHHTTCSEEEEECTT----CBEEEEEEHHHHTTCC----------C---
T ss_pred ceEEhhhccCCCCC-CeEECCCCcHHHHHHHHHHcCCceEEEEeCC----CeEEEEEEHHHHHHhhcccC------c---
Confidence 46899999998 7 9999999999999999999999999999986 89999999999975322110 0
Q ss_pred CCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 004131 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (772)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~ 739 (772)
+ ..+.... .. .......++.++|++++.++++++++.+++++|.+.+.+++||+|++
T Consensus 69 -~-------~~~~~~~-----------~~----~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~ 125 (152)
T 4gqw_A 69 -W-------KTFNAVQ-----------KL----LSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSD 125 (152)
T ss_dssp -C-------HHHHHHH-----------TC---------CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTT
T ss_pred -c-------cchHHHH-----------HH----HHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCC
Confidence 0 0000000 00 00001234666799999999999999999999999999999999988
Q ss_pred CeEEEEEeHhhhhhHhcCCCc
Q 004131 740 SRVIGLITRKDLLIEDGEDST 760 (772)
Q Consensus 740 g~lvGIITr~DLl~~~~~~~~ 760 (772)
|+++|+||++|+++++.+...
T Consensus 126 g~~~Giit~~dil~~~~~~~~ 146 (152)
T 4gqw_A 126 GKLVGIITRGNVVRAALQIKR 146 (152)
T ss_dssp SBEEEEEEHHHHHHHHHC---
T ss_pred CcEEEEEEHHHHHHHHHhccc
Confidence 999999999999999877544
No 27
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.66 E-value=2.8e-16 Score=149.57 Aligned_cols=119 Identities=11% Similarity=0.178 Sum_probs=104.1
Q ss_pred cchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCC
Q 004131 584 MTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (772)
Q Consensus 584 l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~ 661 (772)
++++|+|++ + ++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+.+.+.+.. .
T Consensus 28 ~~v~dim~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~----~~~~Givt~~dl~~~~~~~~--~--------- 91 (149)
T 3k2v_A 28 LRVNDIMHTGDE-IPHVGLQATLRDALLEITRKNLGMTAICDDD----MNIIGIFTDGDLRRVFDTGV--D--------- 91 (149)
T ss_dssp SBGGGTSBCGGG-SCEECTTCBHHHHHHHHHHHTSSEEEEECTT----CBEEEEEEHHHHHHHHCSSS--C---------
T ss_pred cCHHHHhcCCCC-CeEECCCCcHHHHHHHHHhCCCcEEEEECCC----CcEEEEecHHHHHHHHhcCC--C---------
Confidence 599999998 8 9999999999999999999999999999976 89999999999998764322 0
Q ss_pred CCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 004131 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (772)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~ 741 (772)
.....++++|++++.++++++++.+++++|.+.+.+++||+|++ +
T Consensus 92 ----------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~ 136 (149)
T 3k2v_A 92 ----------------------------------MRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-H 136 (149)
T ss_dssp ----------------------------------CTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-E
T ss_pred ----------------------------------cccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-E
Confidence 00123455699999999999999999999999999999999984 9
Q ss_pred EEEEEeHhhhhh
Q 004131 742 VIGLITRKDLLI 753 (772)
Q Consensus 742 lvGIITr~DLl~ 753 (772)
++|+||++|+++
T Consensus 137 ~~Giit~~dil~ 148 (149)
T 3k2v_A 137 LLGVVHMHDLLR 148 (149)
T ss_dssp EEEEEEHHHHTC
T ss_pred EEEEEEHHHhhc
Confidence 999999999986
No 28
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.65 E-value=6.4e-16 Score=148.40 Aligned_cols=142 Identities=12% Similarity=0.138 Sum_probs=111.4
Q ss_pred hhhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCe-eEEEeCCCCCCcEEEEeeeHHHHHHHHhccc-ccCCCCCC
Q 004131 580 KMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNG-FPVIDHSRNGERLVIGLVLRSHLLVLLQSKV-DFQHSPLP 657 (772)
Q Consensus 580 ~l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~-fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~-~~~~~~~~ 657 (772)
....++++|+|+++ ++++++++++.++++.|.+++++. +||+|+ ++++|+|+++||++.+.... .+.....
T Consensus 12 ~~~~~~v~~im~~~-~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-----~~~vGivt~~dl~~~~~~~~~~~~~~~~- 84 (157)
T 1o50_A 12 HMKVKDVCKLISLK-PTVVEEDTPIEEIVDRILEDPVTRTVYVARD-----NKLVGMIPVMHLLKVSGFHFFGFIPKEE- 84 (157)
T ss_dssp TCBHHHHTTSSCCC-CEEECTTCBHHHHHHHHHHSTTCCEEEEEET-----TEEEEEEEHHHHHHHHHHHHHCCCC----
T ss_pred hhccccHhhcccCC-CceECCCCCHHHHHHHHHhCCCCccEEEEEC-----CEEEEEEEHHHHHHHHhhhHHhhhccHH-
Confidence 34678999999998 999999999999999999999999 999997 38999999999988654210 0000000
Q ss_pred CCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEec
Q 004131 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (772)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd 737 (772)
. +... .+.....+++++|++ +.++++++++.+++++|.+.+.+++||+|
T Consensus 85 ------------~---~~~~---------------~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 133 (157)
T 1o50_A 85 ------------L---IRSS---------------MKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD 133 (157)
T ss_dssp -------------------C---------------CCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred ------------H---HHHH---------------HHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc
Confidence 0 0000 000012346677999 99999999999999999999999999999
Q ss_pred CCCeEEEEEeHhhhhhHhcCCC
Q 004131 738 RASRVIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~~~ 759 (772)
++|+++|+||++|+++++.++.
T Consensus 134 ~~g~~vGiit~~dll~~l~~~~ 155 (157)
T 1o50_A 134 EKGEIVGDLNSLEILLALWKGR 155 (157)
T ss_dssp TTSCEEEEEEHHHHHHHHHHSC
T ss_pred CCCEEEEEEEHHHHHHHHHHhh
Confidence 8899999999999999987654
No 29
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.65 E-value=4.6e-16 Score=152.33 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=109.5
Q ss_pred hhccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCC
Q 004131 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 581 l~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~ 658 (772)
+...+|+|+|++ + ++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+||+..+.+..
T Consensus 33 l~~~~v~diM~~~~~-v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~---~~~lvGivt~~Dl~~~~~~~~--------- 99 (173)
T 3ocm_A 33 LAERSIRSIMTPRTD-VSWVNIDDDAATIRQQLTAAPHSFFPVCRGS---LDEVVGIGRAKDLVADLITEG--------- 99 (173)
T ss_dssp HTTSCSTTTSEEGGG-CCCEETTSCHHHHHHHHHHSSCSEEEEESSS---TTSEEEEEEHHHHHHHHHHHS---------
T ss_pred cCCCCHHHhCCcHHH-eEEEeCCCCHHHHHHHHHhCCCCEEEEEeCC---CCCEEEEEEHHHHHHHHhcCC---------
Confidence 567899999974 5 8899999999999999999999999999863 168999999999998754321
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~ 738 (772)
..+++ |.+++.+|++++++.+++++|.+.+.+++||+|+
T Consensus 100 ---------------------------------------~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde 138 (173)
T 3ocm_A 100 ---------------------------------------RVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADE 138 (173)
T ss_dssp ---------------------------------------SCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECT
T ss_pred ---------------------------------------cchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC
Confidence 01234 3467889999999999999999999999999998
Q ss_pred CCeEEEEEeHhhhhhHhcCCCccc
Q 004131 739 ASRVIGLITRKDLLIEDGEDSTTV 762 (772)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~~ 762 (772)
+|+++||||++|+++.+.++..++
T Consensus 139 ~g~lvGiIT~~Dil~~l~~~i~de 162 (173)
T 3ocm_A 139 FGAIEGLVTPIDVFEAIAGEFPDE 162 (173)
T ss_dssp TCCEEEEECHHHHHHHHHCCCCCT
T ss_pred CCCEEEEEeHHHHHHHHhCcCCCc
Confidence 899999999999999998876553
No 30
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.64 E-value=1.3e-15 Score=142.02 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=104.6
Q ss_pred chhhhcc---CCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCC
Q 004131 585 TAKEACG---AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (772)
Q Consensus 585 ~v~diM~---~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~ 661 (772)
+++|+|+ ++ +.++++++++.++.+.|.+++++.+||+| + ++++|+|+.+|+++.+..+. ..
T Consensus 7 ~v~~im~~~~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~----~~~~Givt~~dl~~~~~~~~-----~~----- 70 (135)
T 2rc3_A 7 TVKHLLQEKGHT-VVAIGPDDSVFNAMQKMAADNIGALLVMK-D----EKLVGILTERDFSRKSYLLD-----KP----- 70 (135)
T ss_dssp BHHHHHHHHCCC-CCEECTTSBHHHHHHHHHHHTCSEEEEEE-T----TEEEEEEEHHHHHHHGGGSS-----SC-----
T ss_pred eHHHHHhcCCCC-cEEECCCCcHHHHHHHHHhcCCCEEEEEE-C----CEEEEEEehHHHHHHHHHcC-----CC-----
Confidence 8999999 78 99999999999999999999999999998 4 79999999999986332211 00
Q ss_pred CCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 004131 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (772)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~ 741 (772)
.....++++|++++.++++++++.+++++|.+.+.+++||+| +|+
T Consensus 71 ----------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~ 115 (135)
T 2rc3_A 71 ----------------------------------VKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGK 115 (135)
T ss_dssp ----------------------------------GGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTE
T ss_pred ----------------------------------cccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCE
Confidence 001235556999999999999999999999999999999999 599
Q ss_pred EEEEEeHhhhhhHhcCC
Q 004131 742 VIGLITRKDLLIEDGED 758 (772)
Q Consensus 742 lvGIITr~DLl~~~~~~ 758 (772)
++|+||++|+++++.++
T Consensus 116 ~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 116 VIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp EEEEEEHHHHHHHHHC-
T ss_pred EEEEEEHHHHHHHHHhc
Confidence 99999999999988654
No 31
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.64 E-value=3.1e-16 Score=145.92 Aligned_cols=126 Identities=17% Similarity=0.302 Sum_probs=105.3
Q ss_pred hhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHH-HHhcccccCCCCCCCC
Q 004131 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLV-LLQSKVDFQHSPLPCD 659 (772)
Q Consensus 581 l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~-~L~~~~~~~~~~~~~~ 659 (772)
++.++++|+|+++ +.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|++. .+.+.. .
T Consensus 5 ~~~~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----~~~~Givt~~dl~~~~~~~~~--~------- 70 (133)
T 1y5h_A 5 FTMTTARDIMNAG-VTCVGEHETLTAAAQYMREHDIGALPICGDD----DRLHGMLTDRDIVIKGLAAGL--D------- 70 (133)
T ss_dssp ---CCHHHHSEET-CCCEETTSBHHHHHHHHHHHTCSEEEEECGG----GBEEEEEEHHHHHHTTGGGTC--C-------
T ss_pred hhhcCHHHHhcCC-ceEeCCCCCHHHHHHHHHHhCCCeEEEECCC----CeEEEEEeHHHHHHHHHhcCC--C-------
Confidence 4567999999988 9999999999999999999999999999875 89999999999973 332211 0
Q ss_pred CCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 004131 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (772)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~ 739 (772)
.....++++|++++.++++++++.+++++|.+.+.+++||+|+
T Consensus 71 ------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~- 113 (133)
T 1y5h_A 71 ------------------------------------PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE- 113 (133)
T ss_dssp ------------------------------------TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-
T ss_pred ------------------------------------ccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-
Confidence 0012355569999999999999999999999999999999998
Q ss_pred CeEEEEEeHhhhhhHhcC
Q 004131 740 SRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 740 g~lvGIITr~DLl~~~~~ 757 (772)
|+++|+||++|+++++.+
T Consensus 114 g~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 114 HRLVGIVTEADIARHLPE 131 (133)
T ss_dssp TEEEEEEEHHHHHHTCC-
T ss_pred CEEEEEEEHHHHHHHHHh
Confidence 999999999999998754
No 32
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.64 E-value=1.8e-16 Score=155.34 Aligned_cols=153 Identities=21% Similarity=0.279 Sum_probs=108.9
Q ss_pred ccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCC
Q 004131 583 QMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (772)
Q Consensus 583 ~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~ 660 (772)
.++|+|+|++ + ++++++++++.++++.|.+++++.+||+|++ ++++|+|+++||++.+...........
T Consensus 3 ~~~v~dim~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~----~~~~Givt~~dl~~~~~~~~~~~~~~~---- 73 (180)
T 3sl7_A 3 GYTVGDFMTPRQN-LHVVKPSTSVDDALELLVEKKVTGLPVIDDN----WTLVGVVSDYDLLALDSISGRSQNDTN---- 73 (180)
T ss_dssp CCBHHHHSEEGGG-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----CBEEEEEEHHHHTCC----------------
T ss_pred ceeHHHhcCCCCC-ceeeCCCCcHHHHHHHHHHcCCCeEEEECCC----CeEEEEEEHHHHHhhhhhccccCCccc----
Confidence 4789999998 7 9999999999999999999999999999986 899999999999753211100000000
Q ss_pred CCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 004131 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (772)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g 740 (772)
. ............+..- .........++++|++++.++++++++.+++++|.+.+.+++||+|++|
T Consensus 74 ------~-------~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g 139 (180)
T 3sl7_A 74 ------L-------FPDVDSTWKTFNELQK-LISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADG 139 (180)
T ss_dssp --------------------CCCSHHHHHH-HHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTC
T ss_pred ------c-------cccccchhhhhHHHHH-HHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCC
Confidence 0 0000000000000000 0000112456778999999999999999999999999999999999889
Q ss_pred eEEEEEeHhhhhhHhcCC
Q 004131 741 RVIGLITRKDLLIEDGED 758 (772)
Q Consensus 741 ~lvGIITr~DLl~~~~~~ 758 (772)
+++|+||++|+++++.+.
T Consensus 140 ~~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 140 KLIGILTRGNVVRAALQI 157 (180)
T ss_dssp BEEEEEEHHHHHHHHHHH
T ss_pred eEEEEEEHHHHHHHHHHH
Confidence 999999999999987653
No 33
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.64 E-value=1.9e-16 Score=152.13 Aligned_cols=120 Identities=22% Similarity=0.347 Sum_probs=102.5
Q ss_pred hhccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCC
Q 004131 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 581 l~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~ 658 (772)
+...+|+|+|++ + ++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+|++..+.++
T Consensus 35 l~~~~v~diM~~~~~-~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~---~~~lvGivt~~dl~~~~~~~---------- 100 (156)
T 3oi8_A 35 FSDLEVRDAMITRSR-MNVLKENDSIERITAYVIDTAHSRFPVIGED---KDEVLGILHAKDLLKYMFNP---------- 100 (156)
T ss_dssp HTTCBGGGTCEEGGG-CCCEETTCCHHHHHHHHHHHCCSEEEEESSS---TTCEEEEEEGGGGGGGSSCG----------
T ss_pred cCCCCHhheeeeHHH-eEEECCCCCHHHHHHHHHHCCCCEEEEEcCC---CCcEEEEEEHHHHHHHHHcC----------
Confidence 568899999997 6 8999999999999999999999999999875 14899999999997542110
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~ 738 (772)
...+++++|++ +.++++++++.+++++|.+.+.+++||+|+
T Consensus 101 --------------------------------------~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~ 141 (156)
T 3oi8_A 101 --------------------------------------EQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDE 141 (156)
T ss_dssp --------------------------------------GGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECT
T ss_pred --------------------------------------CcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECC
Confidence 01234556865 889999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhh
Q 004131 739 ASRVIGLITRKDLLI 753 (772)
Q Consensus 739 ~g~lvGIITr~DLl~ 753 (772)
+|+++|+||++|+++
T Consensus 142 ~g~~~Givt~~Dile 156 (156)
T 3oi8_A 142 YGGTSGLVTFEDIIE 156 (156)
T ss_dssp TSSEEEEEEHHHHCC
T ss_pred CCCEEEEEEHHHhcC
Confidence 899999999999974
No 34
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.64 E-value=2.9e-16 Score=151.46 Aligned_cols=134 Identities=16% Similarity=0.236 Sum_probs=110.1
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCC
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~ 661 (772)
..++|+|+|+++ ++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++||+..+.... .....
T Consensus 3 ~~~~v~dim~~~-~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~----~~lvGivt~~dl~~~~~~~~--~~~~~----- 70 (160)
T 2o16_A 3 LMIKVEDMMTRH-PHTLLRTHTLNDAKHLMEALDIRHVPIVDAN----KKLLGIVSQRDLLAAQESSL--QRSAQ----- 70 (160)
T ss_dssp CCCBGGGTSEES-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----CBEEEEEEHHHHHHHHHHHC--C---------
T ss_pred CcCcHHHHhcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcCC----CcEEEEEeHHHHHHHHHHhh--ccccc-----
Confidence 467899999998 9999999999999999999999999999976 89999999999988765421 00000
Q ss_pred CCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 004131 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (772)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~ 741 (772)
..+.....+++++|++++.++++++++.+++++|.+.+.+++||+|+ |+
T Consensus 71 ------------------------------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~ 119 (160)
T 2o16_A 71 ------------------------------GDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DV 119 (160)
T ss_dssp -----------------------------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TE
T ss_pred ------------------------------ccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CE
Confidence 00001123456679999999999999999999999999999999999 99
Q ss_pred EEEEEeHhhhhhHhcCC
Q 004131 742 VIGLITRKDLLIEDGED 758 (772)
Q Consensus 742 lvGIITr~DLl~~~~~~ 758 (772)
++|+||++|+++++.+.
T Consensus 120 lvGiit~~dil~~~~~~ 136 (160)
T 2o16_A 120 LVGIITDSDFVTIAINL 136 (160)
T ss_dssp EEEEECHHHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHHHH
Confidence 99999999999986653
No 35
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.64 E-value=5.1e-16 Score=156.34 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=107.5
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhC---CCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCC
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTN---KHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~---~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~ 658 (772)
...+|+++|+++ ++++++++|+.++++.|++. +++.+||+|++ ++++|+|+.+||+.. ..
T Consensus 52 ~~~~v~~iM~~~-~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~----~~lvGivt~~dll~~---~~--------- 114 (205)
T 3kxr_A 52 SENEIGRYTDHQ-MLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA----DKYLGTVRRYDIFKH---EP--------- 114 (205)
T ss_dssp CTTCGGGGCBCC-CCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT----CBEEEEEEHHHHTTS---CT---------
T ss_pred CcchHHhhccCc-eEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC----CeEEEEEEHHHHHhC---CC---------
Confidence 466899999999 99999999999999999986 78899999986 899999999998531 00
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~ 738 (772)
...++++|++++.+|++++++.++.++|++++++++||||+
T Consensus 115 ---------------------------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~ 155 (205)
T 3kxr_A 115 ---------------------------------------HEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDD 155 (205)
T ss_dssp ---------------------------------------TSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECT
T ss_pred ---------------------------------------cchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC
Confidence 01245569999999999999999999999999999999999
Q ss_pred CCeEEEEEeHhhhhhHhcCCCccc
Q 004131 739 ASRVIGLITRKDLLIEDGEDSTTV 762 (772)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~~ 762 (772)
+|+++|+||++|+++.+.++..++
T Consensus 156 ~g~lvGiIT~~Dil~~i~~e~~ed 179 (205)
T 3kxr_A 156 AGELIGRVTLRAATALVREHYEAQ 179 (205)
T ss_dssp TSBEEEEEEHHHHHHHHHHHHC--
T ss_pred CCeEEEEEEHHHHHHHHHHHHHHH
Confidence 999999999999999987665443
No 36
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.62 E-value=1.3e-15 Score=145.82 Aligned_cols=135 Identities=17% Similarity=0.159 Sum_probs=109.6
Q ss_pred hhhccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCC
Q 004131 580 KMRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (772)
Q Consensus 580 ~l~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~ 657 (772)
.+..++++|+|++ + ++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+...+.....+.
T Consensus 7 ~l~~~~v~~im~~~~~-~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----~~~~Givt~~dl~~~~~~~~~~~----- 76 (157)
T 2emq_A 7 EFMQMTVKPFLIPADK-VAHVQPGNYLDHALLVLTKTGYSAIPVLDTS----YKLHGLISMTMMMDAILGLERIE----- 76 (157)
T ss_dssp ---CCBSTTTCEEGGG-SCCBCTTSBHHHHHHHHHHSSSSEEEEECTT----CCEEEEEEHHHHHHHSBCSSSBC-----
T ss_pred hHhhCcHHhhccCCcc-ceEECCCCcHHHHHHHHHHCCceEEEEEcCC----CCEEEEeeHHHHHHHHhcccccc-----
Confidence 3567899999996 7 8999999999999999999999999999976 89999999999987643311000
Q ss_pred CCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEec
Q 004131 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (772)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd 737 (772)
.+......++++|++++.++++++++.+++++|.+.+. +||+|
T Consensus 77 -----------------------------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd 119 (157)
T 2emq_A 77 -----------------------------------FERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN 119 (157)
T ss_dssp -----------------------------------GGGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEEC
T ss_pred -----------------------------------hHHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEc
Confidence 00001234566799999999999999999999999987 99999
Q ss_pred CCCeEEEEEeHhhhhhHhcCCCcc
Q 004131 738 RASRVIGLITRKDLLIEDGEDSTT 761 (772)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~~~~~ 761 (772)
++|+++|+||++|+++++.+....
T Consensus 120 ~~g~~~Giit~~dil~~~~~~~~~ 143 (157)
T 2emq_A 120 DDGYFAGIFTRREVLKQLNKQLHR 143 (157)
T ss_dssp SSSSEEEEEEHHHHHHHHHHTTCC
T ss_pred CCCeEEEEEEHHHHHHHHHHHhhc
Confidence 889999999999999998766543
No 37
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.61 E-value=1.3e-15 Score=145.84 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=109.3
Q ss_pred hhccchhhhcc--CCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCC
Q 004131 581 MRQMTAKEACG--AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 581 l~~l~v~diM~--~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~ 658 (772)
+...+++|+|+ ++ ++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.+.+.... +..
T Consensus 12 l~~~~v~dim~p~~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~----~~~~Giit~~dl~~~~~~~~-~~~----- 80 (156)
T 3ctu_A 12 FLLGQEETFLTPAKN-LAVLIDTHNADHATLLLSQMTYTRVPVVTDE----KQFVGTIGLRDIMAYQMEHD-LSQ----- 80 (156)
T ss_dssp HHHTTGGGGEEEGGG-CCCEETTSBHHHHHHHHTTCSSSEEEEECC-----CBEEEEEEHHHHHHHHHHHT-CCH-----
T ss_pred HHHHHHHHHcCcccC-ceEECCCCCHHHHHHHHHHCCCceEeEECCC----CEEEEEEcHHHHHHHHHhcc-ccc-----
Confidence 45678999999 56 8999999999999999999999999999976 89999999999998765432 000
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~ 738 (772)
+......++++|++++.++++++++.+++++|.+.+ ++||+|+
T Consensus 81 -----------------------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~ 123 (156)
T 3ctu_A 81 -----------------------------------EIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA 123 (156)
T ss_dssp -----------------------------------HHHTTSBGGGGCBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECT
T ss_pred -----------------------------------cccccCcHHHhccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcC
Confidence 000012355569999999999999999999999886 7999998
Q ss_pred CCeEEEEEeHhhhhhHhcCCCcc
Q 004131 739 ASRVIGLITRKDLLIEDGEDSTT 761 (772)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~ 761 (772)
+|+++|+||++|+++++.+...+
T Consensus 124 ~g~~~Giit~~dil~~l~~~~~~ 146 (156)
T 3ctu_A 124 EGIFQGIITRKSILKAVNALLHD 146 (156)
T ss_dssp TSBEEEEEETTHHHHHHHHHSCC
T ss_pred CCeEEEEEEHHHHHHHHHHHHHh
Confidence 89999999999999998765543
No 38
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.61 E-value=2.9e-15 Score=147.95 Aligned_cols=126 Identities=19% Similarity=0.212 Sum_probs=108.9
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCC
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~ 662 (772)
.++++|+|+++ ++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+||+..+..+. .
T Consensus 8 ~~~v~~im~~~-~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~----g~~vGivt~~dl~~~~~~~~-----~------- 70 (184)
T 1pvm_A 8 FMRVEKIMNSN-FKTVNWNTTVFDAVKIMNENHLYGLVVKDDN----GNDVGLLSERSIIKRFIPRN-----K------- 70 (184)
T ss_dssp CCBGGGTSBTT-CCEEETTCBHHHHHHHHHHHTCCEEEEECTT----SCEEEEEEHHHHHHHTGGGC-----C-------
T ss_pred ccCHHHhcCCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEcCC----CcEEEEEeHHHHHHHHhhcc-----c-------
Confidence 37999999998 9999999999999999999999999999875 79999999999987643211 0
Q ss_pred CCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 004131 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (772)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~l 742 (772)
......++++|++++.++++++++.+++++|.+.+.+++||+|++|++
T Consensus 71 --------------------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~ 118 (184)
T 1pvm_A 71 --------------------------------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRV 118 (184)
T ss_dssp --------------------------------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCE
T ss_pred --------------------------------CcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeE
Confidence 000123556699999999999999999999999999999999998999
Q ss_pred EEEEeHhhhhhHhcC
Q 004131 743 IGLITRKDLLIEDGE 757 (772)
Q Consensus 743 vGIITr~DLl~~~~~ 757 (772)
+|+||++|+++++.+
T Consensus 119 ~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 119 VGIVTLTDLSRYLSR 133 (184)
T ss_dssp EEEEEHHHHTTTSCH
T ss_pred EEEEEHHHHHHHHHh
Confidence 999999999998765
No 39
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=146.30 Aligned_cols=133 Identities=17% Similarity=0.352 Sum_probs=106.2
Q ss_pred hhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCC
Q 004131 581 MRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (772)
Q Consensus 581 l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~ 660 (772)
...++++|+|+++ ++++++++++.++.+.|.+++++.+||+|++ ++++++|+|+++|+...+.... .....
T Consensus 10 ~~~~~v~dim~~~-~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~--~~~~~~Givt~~dl~~~~~~~~-~~~~~----- 80 (164)
T 2pfi_A 10 SHHVRVEHFMNHS-ITTLAKDTPLEEVVKVVTSTDVTEYPLVEST--ESQILVGIVQRAQLVQALQAEP-PSRAP----- 80 (164)
T ss_dssp CCSCBHHHHCBCC-CCCEETTCBHHHHHHHHHTCCCSEEEEESCT--TTCBEEEEEEHHHHHHHHHC-------------
T ss_pred ccCCCHHHHcCCC-CeEECCCCcHHHHHHHHHhCCCCceeEEecC--CCCEEEEEEEHHHHHHHHHhhc-cccCC-----
Confidence 3578999999998 9999999999999999999999999999861 0289999999999988764432 00000
Q ss_pred CCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCC------CceecCCCCHHHHHHHHHHcCCCEEE
Q 004131 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPS------PYVVPEDMSLSKVYNLFRQLGLRHIF 734 (772)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~------p~~V~~~~sL~~a~~lf~~~glr~lp 734 (772)
. ....++++|+++ +.++++++++.+++++|.+.+.+++|
T Consensus 81 -------------------~----------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lp 125 (164)
T 2pfi_A 81 -------------------G----------------HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLF 125 (164)
T ss_dssp -------------------C----------------CCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEE
T ss_pred -------------------c----------------ccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEE
Confidence 0 001233345554 78999999999999999999999999
Q ss_pred EecCCCeEEEEEeHhhhhhHhcCC
Q 004131 735 VVPRASRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 735 VVd~~g~lvGIITr~DLl~~~~~~ 758 (772)
|+| +|+++|+||++|+++++.+.
T Consensus 126 Vvd-~g~l~Giit~~dil~~~~~~ 148 (164)
T 2pfi_A 126 VTS-RGRAVGCVSWVEMKKAISNL 148 (164)
T ss_dssp EEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred EEE-CCEEEEEEEHHHHHHHHHhh
Confidence 999 59999999999999987654
No 40
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.60 E-value=2.4e-15 Score=143.57 Aligned_cols=134 Identities=13% Similarity=0.195 Sum_probs=106.2
Q ss_pred hhhhccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCC
Q 004131 579 YKMRQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 579 ~~l~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~ 658 (772)
..+++++++|+ ++ +.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.+.+.... +...
T Consensus 18 ~~l~~~~v~~~--~~-~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----~~~vGivt~~dl~~~~~~~~-~~~~---- 85 (152)
T 2uv4_A 18 KSLEELQIGTY--AN-IAMVRTTTPVYVALGIFVQHRVSALPVVDEK----GRVVDIYSKFDVINLAAEKT-YNNL---- 85 (152)
T ss_dssp SBHHHHTCSBC--SS-CCCEETTCBHHHHHHHHHHHCCSEEEEECTT----SBEEEEEEHHHHHHHHHCSS-CCCT----
T ss_pred hhHHHccCCcc--CC-ceEeCCCCcHHHHHHHHHHcCCceEeEECCC----CcEEEEEeHHHHHHHhcchh-hhhh----
Confidence 44678889998 66 8899999999999999999999999999976 89999999999988765432 0000
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~ 738 (772)
..++.++ ++.++.|.+++.++++++++.++.++|.+.+.+++||+|+
T Consensus 86 -----------------------~~~v~~~----------m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 132 (152)
T 2uv4_A 86 -----------------------DVSVTKA----------LQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDE 132 (152)
T ss_dssp -----------------------TSBGGGG----------GGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred -----------------------cchHHHH----------HhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECC
Confidence 0112222 1111122378899999999999999999999999999998
Q ss_pred CCeEEEEEeHhhhhhHhcC
Q 004131 739 ASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~ 757 (772)
+|+++|+||++|+++++.+
T Consensus 133 ~g~~vGiit~~dil~~l~~ 151 (152)
T 2uv4_A 133 NDVVKGIVSLSDILQALVL 151 (152)
T ss_dssp TSBEEEEEEHHHHHHHHC-
T ss_pred CCeEEEEEEHHHHHHHHHh
Confidence 8999999999999998754
No 41
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.60 E-value=8.7e-16 Score=147.73 Aligned_cols=134 Identities=13% Similarity=0.126 Sum_probs=110.1
Q ss_pred hhccchhhhccC--CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCC
Q 004131 581 MRQMTAKEACGA--QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 581 l~~l~v~diM~~--~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~ 658 (772)
+..++++|+|++ + ++++++++++.++++.|.+++++.+||+|++ ++++|+|+++||...+.....+..
T Consensus 11 l~~~~v~~im~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~----~~lvGivt~~dl~~~~~~~~~~~~----- 80 (159)
T 1yav_A 11 LLEATVGQFMIEADK-VAHVQVGNNLEHALLVLTKTGYTAIPVLDPS----YRLHGLIGTNMIMNSIFGLERIEF----- 80 (159)
T ss_dssp CTTCBHHHHSEEGGG-SCCEETTCBHHHHHHHHHHHCCSEEEEECTT----CBEEEEEEHHHHHHHHBCSSSBCG-----
T ss_pred HhHhhHHHHhCCccc-eEEECCCCcHHHHHHHHHhCCCcEEEEECCC----CCEEEEeEHHHHHHHhhhhcccch-----
Confidence 457899999998 7 8999999999999999999999999999976 799999999999887643210000
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR 738 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~ 738 (772)
+......++++|++++.++.+++++.+++++|.+.+. +||+|+
T Consensus 81 -----------------------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~ 123 (159)
T 1yav_A 81 -----------------------------------EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND 123 (159)
T ss_dssp -----------------------------------GGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT
T ss_pred -----------------------------------hhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC
Confidence 0001234566799999999999999999999999876 999998
Q ss_pred CCeEEEEEeHhhhhhHhcCCCcc
Q 004131 739 ASRVIGLITRKDLLIEDGEDSTT 761 (772)
Q Consensus 739 ~g~lvGIITr~DLl~~~~~~~~~ 761 (772)
+|+++|+||++|+++++.++..+
T Consensus 124 ~g~~vGiit~~dil~~~~~~~~~ 146 (159)
T 1yav_A 124 EQVFEGIFTRRVVLKELNKHIRS 146 (159)
T ss_dssp TCBEEEEEEHHHHHHHHHHHC--
T ss_pred CCeEEEEEEHHHHHHHHHHHHHh
Confidence 89999999999999988765544
No 42
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.60 E-value=2.7e-15 Score=141.19 Aligned_cols=128 Identities=20% Similarity=0.336 Sum_probs=105.1
Q ss_pred hhccchhh---hccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCC
Q 004131 581 MRQMTAKE---ACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (772)
Q Consensus 581 l~~l~v~d---iM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~ 657 (772)
+.+.+++| +|.++ ++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+.+.+.... +..
T Consensus 5 ~~~~~v~~~~~~~~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----~~~~Givt~~dl~~~~~~~~-~~~---- 74 (144)
T 2nyc_A 5 FLKIPIGDLNIITQDN-MKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN----GYLINVYEAYDVLGLIKGGI-YND---- 74 (144)
T ss_dssp GGGSBGGGSSCCBCSS-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----CBEEEEEEHHHHHHHHHTC---------
T ss_pred hhhcchhhcCCCCCCC-ceEECCCCcHHHHHHHHHHcCcceeeEEcCC----CcEEEEEcHHHHHHHhcccc-ccc----
Confidence 34567888 88888 9999999999999999999999999999976 89999999999988764321 000
Q ss_pred CCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccC------CCceecCCCCHHHHHHHHHHcCCC
Q 004131 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP------SPYVVPEDMSLSKVYNLFRQLGLR 731 (772)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~------~p~~V~~~~sL~~a~~lf~~~glr 731 (772)
....++++|++ ++.++++++++.+++++|.+.+.+
T Consensus 75 ---------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~ 115 (144)
T 2nyc_A 75 ---------------------------------------LSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVH 115 (144)
T ss_dssp ---------------------------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCS
T ss_pred ---------------------------------------CCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCC
Confidence 01224445665 578999999999999999999999
Q ss_pred EEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 732 HIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 732 ~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
++||+|++|+++|+||++|+++++.+
T Consensus 116 ~l~Vvd~~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 116 RFFVVDDVGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp EEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 99999988999999999999998754
No 43
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.60 E-value=3.5e-15 Score=143.05 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=107.3
Q ss_pred cchhhhcc------CCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCC
Q 004131 584 MTAKEACG------AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLP 657 (772)
Q Consensus 584 l~v~diM~------~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~ 657 (772)
.+|+|+|+ ++ +.++++++++.++++.|.+++++.+||+| + ++++|+|+.+|+++.+..+. ..
T Consensus 7 ~~v~dim~~~~~~~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~----~~~~Givt~~dl~~~~~~~~-~~----- 74 (157)
T 4fry_A 7 TTVAQILKAKPDSGRT-IYTVTKNDFVYDAIKLMAEKGIGALLVVD-G----DDIAGIVTERDYARKVVLQE-RS----- 74 (157)
T ss_dssp CBHHHHHHHSTTTTCC-CCEEETTSBHHHHHHHHHHHTCSEEEEES-S----SSEEEEEEHHHHHHHSGGGT-CC-----
T ss_pred HHHHHHHhcccccCCC-CeEECCCCcHHHHHHHHHHcCCCEEEEee-C----CEEEEEEEHHHHHHHHHhcc-CC-----
Confidence 57999998 55 79999999999999999999999999965 3 79999999999988654332 00
Q ss_pred CCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEec
Q 004131 658 CDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (772)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd 737 (772)
.....++++|++++.++++++++.+++++|.+.+.+++||+|
T Consensus 75 --------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd 116 (157)
T 4fry_A 75 --------------------------------------SKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD 116 (157)
T ss_dssp --------------------------------------SSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred --------------------------------------ccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 001235566999999999999999999999999999999999
Q ss_pred CCCeEEEEEeHhhhhhHhcCCCcc
Q 004131 738 RASRVIGLITRKDLLIEDGEDSTT 761 (772)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~~~~~ 761 (772)
+|+++|+||++|+++++.++..+
T Consensus 117 -~g~~~Giit~~dil~~l~~~~~~ 139 (157)
T 4fry_A 117 -GGKLIGLISIGDLVKSVIADQQF 139 (157)
T ss_dssp -TTEEEEEEEHHHHHHHHHTTCCC
T ss_pred -CCEEEEEEEHHHHHHHHHHHHHh
Confidence 59999999999999998876543
No 44
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.59 E-value=3.5e-15 Score=146.92 Aligned_cols=156 Identities=24% Similarity=0.424 Sum_probs=113.0
Q ss_pred hhhhccchhhhccCCc---eEEe--cCcccHHHHHHHHhhCCCCeeEEE--eCCCCCCcEEEEeeeHHHHHHHHhccccc
Q 004131 579 YKMRQMTAKEACGAQK---VVSL--PRIIKVADVVSILRTNKHNGFPVI--DHSRNGERLVIGLVLRSHLLVLLQSKVDF 651 (772)
Q Consensus 579 ~~l~~l~v~diM~~~~---vv~v--~~~~tv~~~~~~L~~~~~~~fPVV--d~~~~~~~~lvGiItr~dL~~~L~~~~~~ 651 (772)
..++..+|+|+|+++. ++++ ++++++.++.+.|.+++++.+||+ |++ ++++|+|+++|+++.+......
T Consensus 6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~----~~lvGiit~~dl~~~~~~~~~~ 81 (185)
T 2j9l_A 6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES----QRLVGFVLRRDLIISIENARKK 81 (185)
T ss_dssp ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT----CBEEEEEEHHHHHHHHHHHHTS
T ss_pred hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC----CeEEEEEEHHHHHHHHHhhccc
Confidence 4567899999998741 5677 999999999999999999999999 554 8999999999999876543200
Q ss_pred CCCCCCCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCC
Q 004131 652 QHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLR 731 (772)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr 731 (772)
.... .. .....+.+.. .+. ........+++++|++++.++++++++.+++++|.+.+.+
T Consensus 82 ~~~~--~~---------~~~~~~~~~~-------~~~---~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~ 140 (185)
T 2j9l_A 82 QDGV--VS---------TSIIYFTEHS-------PPL---PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLR 140 (185)
T ss_dssp CSCC--CT---------TCEEECSSSC-------CCC---CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCS
T ss_pred CCCc--cc---------cceeecccCC-------ccc---ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCc
Confidence 0000 00 0000000000 000 0011123567788999999999999999999999999999
Q ss_pred EEEEecCCCeEEEEEeHhhhhhHhcCCCc
Q 004131 732 HIFVVPRASRVIGLITRKDLLIEDGEDST 760 (772)
Q Consensus 732 ~lpVVd~~g~lvGIITr~DLl~~~~~~~~ 760 (772)
++||+| +|+++|+||++|+++++.+...
T Consensus 141 ~l~Vvd-~g~~vGiit~~dll~~l~~~~~ 168 (185)
T 2j9l_A 141 QCLVTH-NGRLLGIITKKDVLKHIAQMAN 168 (185)
T ss_dssp EEEEEE-TTEEEEEEEHHHHHHHHHHHCC
T ss_pred EEEEEE-CCEEEEEEEHHHHHHHHHHhhc
Confidence 999999 6999999999999998876543
No 45
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.56 E-value=1.1e-14 Score=150.57 Aligned_cols=170 Identities=12% Similarity=0.160 Sum_probs=107.9
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccC---CCCCCC-
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQ---HSPLPC- 658 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~---~~~~~~- 658 (772)
..+++|+|+++ ++++++++++.++++.|.+++++.+||+|++ ++++|+|+..|+.+.+....... ......
T Consensus 6 ~~~v~~im~~~-~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~----~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3l2b_A 6 KLKVEDLEMDK-IAPLAPEVSLKMAWNIMRDKNLKSIPVADGN----NHLLGMLSTSNITATYMDIWDSNILAKSATSLD 80 (245)
T ss_dssp CCBGGGSCCBC-CCCBCTTCBHHHHHHHHHHTTCSEEEEECTT----CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHH
T ss_pred cCcHHHhcCCC-CcEECCCCcHHHHHHHHHHcCCCEEEEEcCC----CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHH
Confidence 46899999998 9999999999999999999999999999986 89999999999998775432000 000000
Q ss_pred ------CCC--CCCCC---cccccc-------ccccccCCCCC----------------CcccccCC-------------
Q 004131 659 ------DTR--GGSKP---ISHSFS-------EFVKPASSKGL----------------SIDDIHLS------------- 691 (772)
Q Consensus 659 ------~~~--~~~~~---~~~~~~-------~~~~~~~~~~~----------------~v~di~~~------------- 691 (772)
... .+.+. ...++. .+.+....+.. .+.-+.++
T Consensus 81 ~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a 160 (245)
T 3l2b_A 81 NILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELA 160 (245)
T ss_dssp HHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHH
T ss_pred HHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 000 00000 000000 00000000000 00000000
Q ss_pred -----------------ccccccccccccccc-CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 692 -----------------SDDMEMYIDLGPFLN-PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 692 -----------------~~~~~~~idl~~~m~-~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
.........++++|+ +++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++
T Consensus 161 ~~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~ 240 (245)
T 3l2b_A 161 KKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIS 240 (245)
T ss_dssp HHHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC----
T ss_pred HHcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhc
Confidence 001123456888999 89999999999999999999999999999998899999999999998
Q ss_pred HhcC
Q 004131 754 EDGE 757 (772)
Q Consensus 754 ~~~~ 757 (772)
+..+
T Consensus 241 ~~~~ 244 (245)
T 3l2b_A 241 THKK 244 (245)
T ss_dssp ----
T ss_pred hhhc
Confidence 7653
No 46
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.55 E-value=1.7e-14 Score=152.18 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=104.3
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhC-----CCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCC
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTN-----KHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~-----~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~ 656 (772)
...+++++|+++ ++++++++++.++++.++++ +++.+||+|++ ++++|+|+.+|++.. ..
T Consensus 133 ~~~~v~~iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~----~~lvGivt~~dll~~---~~------- 197 (278)
T 2yvy_A 133 EEDEAGGLMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK----GRLKGVLSLRDLIVA---DP------- 197 (278)
T ss_dssp CTTBGGGTCBSC-CCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT----CBEEEEEEHHHHHHS---CT-------
T ss_pred CcchHHhhcCCC-ceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC----CCEEEEEEHHHHhcC---CC-------
Confidence 456899999998 99999999999999999986 67899999976 899999999999742 00
Q ss_pred CCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 004131 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (772)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVV 736 (772)
..+++++|++++.+|++++++.++.++|++.+.+++|||
T Consensus 198 -----------------------------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 236 (278)
T 2yvy_A 198 -----------------------------------------RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVV 236 (278)
T ss_dssp -----------------------------------------TCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred -----------------------------------------CCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEE
Confidence 012445599999999999999999999999999999999
Q ss_pred cCCCeEEEEEeHhhhhhHhcCCCcccccc
Q 004131 737 PRASRVIGLITRKDLLIEDGEDSTTVELQ 765 (772)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~~~~~~~~ 765 (772)
|++|+++|+||++|+++.+.++..+...+
T Consensus 237 d~~g~lvGivT~~Dil~~i~~e~~ed~~~ 265 (278)
T 2yvy_A 237 DEEGRLVGIVTVDDVLDVLEAEATEDIHK 265 (278)
T ss_dssp CTTSBEEEEEEHHHHHHHC----------
T ss_pred eCCCeEEEEEEHHHHHHHHHHHhHHHHHH
Confidence 98899999999999999988776554433
No 47
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.54 E-value=1.2e-14 Score=147.27 Aligned_cols=120 Identities=19% Similarity=0.153 Sum_probs=104.9
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCC
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~ 662 (772)
..+++++|.++ ++++++++++.++.+.|.+++++++||+|++ ++++|+|+.+|+...+.
T Consensus 12 ~~~~~~~~~~~-~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~----~~l~Givt~~dl~~~~~---------------- 70 (213)
T 1vr9_A 12 HMKVKKWVTQD-FPMVEESATVRECLHRMRQYQTNECIVKDRE----GHFRGVVNKEDLLDLDL---------------- 70 (213)
T ss_dssp -CBGGGGCBSC-SCEEETTCBHHHHHHHHHHTTSSEEEEECTT----SBEEEEEEGGGGTTSCT----------------
T ss_pred ccCHHHhhcCC-CeEECCCCcHHHHHHHHHHCCCCEEEEEcCC----CEEEEEEEHHHHHhhcC----------------
Confidence 45789999999 9999999999999999999999999999975 89999999999853210
Q ss_pred CCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 004131 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (772)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~l 742 (772)
...++++|++++.++++++++.++.++|.+.+.+++||+|++|++
T Consensus 71 -----------------------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l 115 (213)
T 1vr9_A 71 -----------------------------------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRL 115 (213)
T ss_dssp -----------------------------------TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBE
T ss_pred -----------------------------------CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEE
Confidence 012455699999999999999999999999999999999988999
Q ss_pred EEEEeHhhhhhHhcCC
Q 004131 743 IGLITRKDLLIEDGED 758 (772)
Q Consensus 743 vGIITr~DLl~~~~~~ 758 (772)
+|+||++|+++.+...
T Consensus 116 vGiit~~Dil~~~~~~ 131 (213)
T 1vr9_A 116 KGAVSLHDFLEALIEA 131 (213)
T ss_dssp EEEEEHHHHHHHHHHS
T ss_pred EEEEEHHHHHHHHHHH
Confidence 9999999999987543
No 48
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.54 E-value=1.4e-14 Score=166.45 Aligned_cols=153 Identities=13% Similarity=0.098 Sum_probs=124.1
Q ss_pred CcchHHHHHHhhCCCCCCCCchhhhhccchhhhccCCceEEecCc-ccHHHHHHHHhhCCCCeeEEEe-CCCCCCcEEEE
Q 004131 557 SEGLYEEQAHLRGVPLLESRPKYKMRQMTAKEACGAQKVVSLPRI-IKVADVVSILRTNKHNGFPVID-HSRNGERLVIG 634 (772)
Q Consensus 557 ~~~iy~~~l~~kg~p~L~~~~~~~l~~l~v~diM~~~~vv~v~~~-~tv~~~~~~L~~~~~~~fPVVd-~~~~~~~~lvG 634 (772)
....++.++..+++........+.+.+.+|+|+|+++ +++++++ +++.++++.|.+++++.+||+| ++ ++++|
T Consensus 357 s~~~~~~~l~~rg~~~~~~~~~~~l~~~~V~diM~~~-~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~----g~lvG 431 (527)
T 3pc3_A 357 TKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELPA-PPVILKSDATVGEAIALMKKHRVDQLPVVDQDD----GSVLG 431 (527)
T ss_dssp TTTTSHHHHHHTTSSCCCCTTCCTTTTSBGGGGCCCC-CSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT----CCEEE
T ss_pred hhhhcHHHHHhcCCccccccccccccCCcHHHhCcCC-CeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC----CEEEE
Confidence 4444566777777755444444557889999999998 9999999 9999999999999999999999 54 79999
Q ss_pred eeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecC
Q 004131 635 LVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPE 714 (772)
Q Consensus 635 iItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~ 714 (772)
+|+++||++.+.... .. ...+++++|++++.+|++
T Consensus 432 iVt~~Dll~~l~~~~-~~--------------------------------------------~~~~V~~im~~~~~~v~~ 466 (527)
T 3pc3_A 432 VVGQETLITQIVSMN-RQ--------------------------------------------QSDPAIKALNKRVIRLNE 466 (527)
T ss_dssp EEEHHHHHHHHHHHC-CC--------------------------------------------TTSBGGGGEETTCCEEET
T ss_pred EEEHHHHHHHHHhcc-Cc--------------------------------------------CCCcHHHHhcCCCeEECC
Confidence 999999998765432 00 012355569999999999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEecCC----CeEEEEEeHhhhhhHhcCCCcc
Q 004131 715 DMSLSKVYNLFRQLGLRHIFVVPRA----SRVIGLITRKDLLIEDGEDSTT 761 (772)
Q Consensus 715 ~~sL~~a~~lf~~~glr~lpVVd~~----g~lvGIITr~DLl~~~~~~~~~ 761 (772)
++++.++.++|.+.+. +||||++ |+++||||++||++++.++...
T Consensus 467 ~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~~~ 515 (527)
T 3pc3_A 467 SEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGKQK 515 (527)
T ss_dssp TSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcccc
Confidence 9999999999987765 7999984 9999999999999999876643
No 49
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.53 E-value=8.7e-15 Score=155.07 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=106.7
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhC-----CCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCC
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTN-----KHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~-----~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~ 656 (772)
...+|+++|+++ ++++++++++.++.+.|+++ +++.+||+|++ ++++|+|+.+|++.. ..
T Consensus 135 ~~~~v~~iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~----~~lvGivt~~dll~~---~~------- 199 (286)
T 2oux_A 135 EDETAGAIMTTE-FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE----NHLVGVISLRDLIVN---DD------- 199 (286)
T ss_dssp CTTBHHHHCBSC-CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT----CBEEEEEEHHHHTTS---CT-------
T ss_pred ChHHHHHhCCCC-ceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC----CeEEEEEEHHHHHcC---CC-------
Confidence 467999999998 99999999999999999987 78889999976 899999999998531 00
Q ss_pred CCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 004131 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (772)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVV 736 (772)
...++++|++++.+|++++++.++.++|.+++.+++|||
T Consensus 200 -----------------------------------------~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVV 238 (286)
T 2oux_A 200 -----------------------------------------DTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVT 238 (286)
T ss_dssp -----------------------------------------TSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred -----------------------------------------CCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEE
Confidence 123455699999999999999999999999999999999
Q ss_pred cCCCeEEEEEeHhhhhhHhcCCC
Q 004131 737 PRASRVIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~~ 759 (772)
|++|+++|+||++|+++.+.++.
T Consensus 239 d~~g~lvGiIT~~Dil~~i~~e~ 261 (286)
T 2oux_A 239 DYDDHLLGIVTVDDIIDVIDDEA 261 (286)
T ss_dssp CTTCBEEEEEEHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEHHHHHHHHHHHh
Confidence 98899999999999999877554
No 50
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.52 E-value=1.6e-14 Score=153.39 Aligned_cols=137 Identities=16% Similarity=0.204 Sum_probs=114.5
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCC
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~ 662 (772)
..+++++|+++ +.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+++.+.... ....
T Consensus 155 ~~~v~~~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~----~~~~Givt~~dl~~~~~~~~--~~~~------- 220 (296)
T 3ddj_A 155 IFPVKVFMSTK-VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD----NKVVGIVTVVNAIKQLAKAV--DKLD------- 220 (296)
T ss_dssp CCBHHHHSBCS-CCCEETTSBHHHHHHHHHHHTCSEEEEECTT----SCEEEEEEHHHHHHHHHHHH--HHTC-------
T ss_pred cccHHHhhcCC-CeEECCCCCHHHHHHHHHHcCCCEEEEEcCC----CEEEEEEEHHHHHHHHHHHH--hhcC-------
Confidence 45899999998 9999999999999999999999999999976 89999999999998775321 0000
Q ss_pred CCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 004131 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (772)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~l 742 (772)
+ +.....+++++|+++++++++++++.++.++|.+.+.+++||+|++|++
T Consensus 221 ------------------------~------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~ 270 (296)
T 3ddj_A 221 ------------------------P------DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTI 270 (296)
T ss_dssp ------------------------T------HHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCE
T ss_pred ------------------------h------hhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeE
Confidence 0 0011234666799999999999999999999999999999999988999
Q ss_pred EEEEeHhhhhhHhcCCCcccc
Q 004131 743 IGLITRKDLLIEDGEDSTTVE 763 (772)
Q Consensus 743 vGIITr~DLl~~~~~~~~~~~ 763 (772)
+|+||++|+++++.++...+.
T Consensus 271 ~Giit~~Dil~~l~~~~~~~~ 291 (296)
T 3ddj_A 271 RGIITERDLLIALHHILVMEK 291 (296)
T ss_dssp EEEEEHHHHHHHHHHHHHHHH
T ss_pred EEEEcHHHHHHHHHHHhcchh
Confidence 999999999999887655443
No 51
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.50 E-value=4.1e-14 Score=148.84 Aligned_cols=156 Identities=13% Similarity=0.088 Sum_probs=108.1
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCC
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~ 662 (772)
..+++++|.++ +.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|++.....+..+..... . ..
T Consensus 125 ~~~v~~~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~----~~~~Giit~~dl~~~~~~~~~~~~~~~-~-~~- 196 (282)
T 2yzq_A 125 GVEIEPYYQRY-VSIVWEGTPLKAALKALLLSNSMALPVVDSE----GNLVGIVDETDLLRDSEIVRIMKSTEL-A-AS- 196 (282)
T ss_dssp GCBSTTTSBSC-CCCEETTSBHHHHHHHHHTCSSSEEEEECTT----SCEEEEEEGGGGGGCGGGCC-------------
T ss_pred cCcHHHHhCCC-CEEECCCCCHHHHHHHHHHcCCcEEEEEcCC----CeEEEEEEHHHHhhhhhhhhhhccchh-h-hh-
Confidence 56789999988 8999999999999999999999999999876 789999999999732111000000000 0 00
Q ss_pred CCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 004131 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (772)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~l 742 (772)
.+....... ...+..-.........+++++|++++.++++++++.+|.++|.+.+++++||+|++|++
T Consensus 197 ------~~~~~~~~~------~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~l 264 (282)
T 2yzq_A 197 ------SEEEWILES------HPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDL 264 (282)
T ss_dssp ----------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEE
T ss_pred ------hhhhhhccc------chHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCE
Confidence 000000000 00000000000112355777899999999999999999999999999999999988899
Q ss_pred EEEEeHhhhhhHhcCC
Q 004131 743 IGLITRKDLLIEDGED 758 (772)
Q Consensus 743 vGIITr~DLl~~~~~~ 758 (772)
+|+||++|+++++.++
T Consensus 265 vGiit~~Dil~~~~~~ 280 (282)
T 2yzq_A 265 IGLIRDFDLLKVLVKS 280 (282)
T ss_dssp EEEEEHHHHGGGGCC-
T ss_pred EEEEeHHHHHHHHHhh
Confidence 9999999999988654
No 52
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.49 E-value=4.5e-14 Score=148.13 Aligned_cols=132 Identities=18% Similarity=0.258 Sum_probs=107.6
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCC
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~ 663 (772)
.+++++|+++ +.++++++++.++.+.|.+++++.+||+++ ++++|+|+++|+++.+.+...+.....
T Consensus 148 ~~v~~~m~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~Givt~~dl~~~~~~~~~~~~~~~------- 214 (280)
T 3kh5_A 148 EVIDDYITRD-VIVATPGERLKDVARTMVRNGFRRLPVVSE-----GRLVGIITSTDFIKLLGSDWAFNHMQT------- 214 (280)
T ss_dssp CBSGGGCBCS-CCCBCTTCBHHHHHHHHHHHTCSEEEEEET-----TEEEEEEEHHHHHHHHTSHHHHHHHHS-------
T ss_pred CCHHHHhCCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-----CEEEEEEEHHHHHHHHhhhhhhhhhcc-------
Confidence 4789999998 999999999999999999999999999954 799999999999987654320000000
Q ss_pred CCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 004131 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (772)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lv 743 (772)
....+ ....+++++|++++.++++++++.++.++|.+.+.+++||+|++|+++
T Consensus 215 -------------------~~~~~--------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~ 267 (280)
T 3kh5_A 215 -------------------GNVRE--------ITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIK 267 (280)
T ss_dssp -------------------CCTHH--------HHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEE
T ss_pred -------------------cchhh--------hhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEE
Confidence 00000 012346677999999999999999999999999999999999988999
Q ss_pred EEEeHhhhhhHh
Q 004131 744 GLITRKDLLIED 755 (772)
Q Consensus 744 GIITr~DLl~~~ 755 (772)
|+||++|+++++
T Consensus 268 Givt~~dil~~l 279 (280)
T 3kh5_A 268 GIITEKDVLKYF 279 (280)
T ss_dssp EEEEHHHHGGGG
T ss_pred EEEeHHHHHHhh
Confidence 999999999875
No 53
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.47 E-value=9.5e-14 Score=149.30 Aligned_cols=128 Identities=20% Similarity=0.331 Sum_probs=109.1
Q ss_pred hccchhhh---ccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCC
Q 004131 582 RQMTAKEA---CGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPC 658 (772)
Q Consensus 582 ~~l~v~di---M~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~ 658 (772)
.+.+++++ |+++ +.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+++.+.... +..
T Consensus 185 ~~~~v~~~~~~m~~~-~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~----~~~~Giit~~dl~~~~~~~~-~~~----- 253 (323)
T 3t4n_C 185 LKIPIGDLNIITQDN-MKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN----GYLINVYEAYDVLGLIKGGI-YND----- 253 (323)
T ss_dssp CCSBGGGTTCSBCTT-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----CBEEEEEETTHHHHHHHTTH-HHH-----
T ss_pred hhCcHHHcCCCCCCC-cEEECCCCcHHHHHHHHHHcCCCEEEEECCC----CeEEEEEeHHHHHHHHhhch-hhh-----
Confidence 34588999 9888 9999999999999999999999999999986 89999999999998775432 000
Q ss_pred CCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccC------CCceecCCCCHHHHHHHHHHcCCCE
Q 004131 659 DTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP------SPYVVPEDMSLSKVYNLFRQLGLRH 732 (772)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~------~p~~V~~~~sL~~a~~lf~~~glr~ 732 (772)
....++++|++ +++++++++++.++.++|.+.+.++
T Consensus 254 --------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~ 295 (323)
T 3t4n_C 254 --------------------------------------LSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHR 295 (323)
T ss_dssp --------------------------------------TTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCE
T ss_pred --------------------------------------ccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCE
Confidence 01234455776 7899999999999999999999999
Q ss_pred EEEecCCCeEEEEEeHhhhhhHhcCC
Q 004131 733 IFVVPRASRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 733 lpVVd~~g~lvGIITr~DLl~~~~~~ 758 (772)
+||+|++|+++|+||++|+++++.++
T Consensus 296 l~Vvd~~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 296 FFVVDDVGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp EEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 99999889999999999999988654
No 54
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.44 E-value=1.2e-13 Score=156.31 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=106.3
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhC-----CCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCC
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTN-----KHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~-----~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~ 656 (772)
...+++++|+++ +++++++++++++.+.++++ +++.+||+|++ ++++|+|+.+|++.. ..
T Consensus 153 ~~~~v~~iM~~~-~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~----~~lvGiVt~~Dll~~---~~------- 217 (473)
T 2zy9_A 153 EEDEAGGLMTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK----GRLKGVLSLRDLIVA---DP------- 217 (473)
T ss_dssp CTTBSTTTCBSC-EEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT----SBEEEEEEHHHHHHS---CT-------
T ss_pred CCCCHHHhCCCC-ceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC----CcEEEEEEHHHHhcC---CC-------
Confidence 467899999999 99999999999999999986 46899999986 899999999999641 00
Q ss_pred CCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 004131 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (772)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVV 736 (772)
..+++++|++++.+++++++++++.++|++++.+.+|||
T Consensus 218 -----------------------------------------~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVV 256 (473)
T 2zy9_A 218 -----------------------------------------RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVV 256 (473)
T ss_dssp -----------------------------------------TSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEE
T ss_pred -----------------------------------------CCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEE
Confidence 023455699999999999999999999999999999999
Q ss_pred cCCCeEEEEEeHhhhhhHhcCCC
Q 004131 737 PRASRVIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 737 d~~g~lvGIITr~DLl~~~~~~~ 759 (772)
|++|+++|+||++|+++.+.++.
T Consensus 257 De~g~lvGiIT~~Dil~~i~~e~ 279 (473)
T 2zy9_A 257 DEEGRLVGIVTVDDVLDVLEAEA 279 (473)
T ss_dssp CTTSBEEEEEEHHHHHHHHHHHH
T ss_pred cCCCEEEEEEehHhhHHHHHHHh
Confidence 99999999999999999876543
No 55
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.43 E-value=7.6e-13 Score=138.73 Aligned_cols=123 Identities=19% Similarity=0.339 Sum_probs=107.1
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCC
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~ 662 (772)
+.+++|+|+++ ++++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+.+.+.... ..
T Consensus 83 ~~~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~----~~~~Givt~~dl~~~~~~~~--~~--------- 146 (280)
T 3kh5_A 83 NEPVREIMEEN-VITLKENADIDEAIETFLTKNVGGAPIVNDE----NQLISLITERDVIRALLDKI--DE--------- 146 (280)
T ss_dssp TSBGGGTSBCS-CCCEETTCBHHHHHHHHHHTTCSEEEEECTT----CBEEEEEEHHHHHHHHGGGS--CT---------
T ss_pred hhhHHHhcCCC-CEEECCCCCHHHHHHHHHhCCCCEEEEEcCC----CEEEEEEEHHHHHHHHhhcC--CC---------
Confidence 46899999998 9999999999999999999999999999886 89999999999998765432 00
Q ss_pred CCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeE
Q 004131 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRV 742 (772)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~l 742 (772)
..+++++|++++.++++++++.++.+.|++.+.+++||++ +|++
T Consensus 147 -----------------------------------~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~ 190 (280)
T 3kh5_A 147 -----------------------------------NEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS-EGRL 190 (280)
T ss_dssp -----------------------------------TCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEE
T ss_pred -----------------------------------CCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEE
Confidence 0124455888999999999999999999999999999994 5999
Q ss_pred EEEEeHhhhhhHhcC
Q 004131 743 IGLITRKDLLIEDGE 757 (772)
Q Consensus 743 vGIITr~DLl~~~~~ 757 (772)
+|+||++|+++...+
T Consensus 191 ~Givt~~dl~~~~~~ 205 (280)
T 3kh5_A 191 VGIITSTDFIKLLGS 205 (280)
T ss_dssp EEEEEHHHHHHHHTS
T ss_pred EEEEEHHHHHHHHhh
Confidence 999999999998753
No 56
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.43 E-value=2.4e-13 Score=144.31 Aligned_cols=123 Identities=15% Similarity=0.277 Sum_probs=107.5
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCC
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~ 661 (772)
.+.+++|+|+++ ++++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++.+....
T Consensus 91 ~~~~v~~im~~~-~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~----~~lvGivt~~dl~~~~~~~~------------ 153 (296)
T 3ddj_A 91 STTPIIDYMTPN-PVTVYNTSDEFTAINIMVTRNFGSLPVVDIN----DKPVGIVTEREFLLLYKDLD------------ 153 (296)
T ss_dssp HTSBGGGTSEES-CCCEETTSCHHHHHHHHHHHTCSEEEEECTT----SCEEEEEEHHHHGGGGGGSC------------
T ss_pred hcccHHHhccCC-CEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC----CcEEEEEeHHHHHHhhhccc------------
Confidence 357899999998 9999999999999999999999999999876 89999999999976543221
Q ss_pred CCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 004131 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (772)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~ 741 (772)
....++++|++++.++++++++.++.+.|.+.+.+++||+|++|+
T Consensus 154 -----------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~ 198 (296)
T 3ddj_A 154 -----------------------------------EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNK 198 (296)
T ss_dssp -----------------------------------CCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred -----------------------------------ccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCE
Confidence 011345569899999999999999999999999999999998899
Q ss_pred EEEEEeHhhhhhHhc
Q 004131 742 VIGLITRKDLLIEDG 756 (772)
Q Consensus 742 lvGIITr~DLl~~~~ 756 (772)
++|+||++|+++.+.
T Consensus 199 ~~Givt~~dl~~~~~ 213 (296)
T 3ddj_A 199 VVGIVTVVNAIKQLA 213 (296)
T ss_dssp EEEEEEHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHH
Confidence 999999999998865
No 57
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.42 E-value=7e-13 Score=143.19 Aligned_cols=129 Identities=15% Similarity=0.263 Sum_probs=108.3
Q ss_pred ccchhh---hccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCC
Q 004131 583 QMTAKE---ACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (772)
Q Consensus 583 ~l~v~d---iM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~ 659 (772)
..++++ +|.++ +.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+++.+.... +.
T Consensus 181 ~~~v~~l~~~m~~~-~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~----~~~~Giit~~dl~~~~~~~~-~~------- 247 (334)
T 2qrd_G 181 RVPLNQMTIGTWSN-LATASMETKVYDVIKMLAEKNISAVPIVNSE----GTLLNVYESVDVMHLIQDGD-YS------- 247 (334)
T ss_dssp CCBGGGSSCSBCSS-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT----CBEEEEEETHHHHHHHTTSC-GG-------
T ss_pred hCcHHHhCCcccCC-ceEECCCCcHHHHHHHHHHcCCcEEEEEcCC----CcEEEEEEHHHHHHHhhccc-cc-------
Confidence 457888 58888 9999999999999999999999999999976 89999999999988764321 00
Q ss_pred CCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccC------CCceecCCCCHHHHHHHHHHcCCCEE
Q 004131 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP------SPYVVPEDMSLSKVYNLFRQLGLRHI 733 (772)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~------~p~~V~~~~sL~~a~~lf~~~glr~l 733 (772)
....++.++|++ ++.++++++++.++.++|.+.+.+++
T Consensus 248 ------------------------------------~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l 291 (334)
T 2qrd_G 248 ------------------------------------NLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRL 291 (334)
T ss_dssp ------------------------------------GGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEE
T ss_pred ------------------------------------cccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEE
Confidence 001234455774 78999999999999999999999999
Q ss_pred EEecCCCeEEEEEeHhhhhhHhcCCCc
Q 004131 734 FVVPRASRVIGLITRKDLLIEDGEDST 760 (772)
Q Consensus 734 pVVd~~g~lvGIITr~DLl~~~~~~~~ 760 (772)
||+|++|+++|+||++|+++++.++..
T Consensus 292 ~Vvd~~g~l~Giit~~dil~~~~~~~~ 318 (334)
T 2qrd_G 292 FVVDENLKLEGILSLADILNYIIYDKT 318 (334)
T ss_dssp EEECTTCBEEEEEEHHHHHHHHHSCCC
T ss_pred EEECCCCeEEEEEeHHHHHHHHHhccc
Confidence 999988999999999999999877654
No 58
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.39 E-value=2.9e-13 Score=142.35 Aligned_cols=118 Identities=19% Similarity=0.299 Sum_probs=88.4
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCC
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~ 663 (772)
++++|+|+++ ++++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|++..+.+
T Consensus 1 m~v~~im~~~-~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~----~~~~Giv~~~dl~~~~~~---------------- 59 (282)
T 2yzq_A 1 MRVKTIMTQN-PVTITLPATRNYALELFKKYKVRSFPVVNKE----GKLVGIISVKRILVNPDE---------------- 59 (282)
T ss_dssp CBHHHHSEES-CCCEESSCC------------CCEEEEECTT----CCEEEEEESSCC----------------------
T ss_pred CchHHhccCC-CeEECCCCcHHHHHHHHHHcCCCeEEEEcCC----CcEEEEEEHHHHHhhhcc----------------
Confidence 4789999988 9999999999999999999999999999975 799999999998643211
Q ss_pred CCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 004131 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (772)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lv 743 (772)
..++++|.+++.++++++++.++.+.|.+.+.+++||+|++|+++
T Consensus 60 -----------------------------------~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~ 104 (282)
T 2yzq_A 60 -----------------------------------EQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPV 104 (282)
T ss_dssp ---------------------------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEE
T ss_pred -----------------------------------CCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEE
Confidence 123445888889999999999999999999999999999889999
Q ss_pred EEEeHhhhhh-HhcC
Q 004131 744 GLITRKDLLI-EDGE 757 (772)
Q Consensus 744 GIITr~DLl~-~~~~ 757 (772)
|+||++|+++ .+.+
T Consensus 105 Giit~~di~~~~~~~ 119 (282)
T 2yzq_A 105 GILTVGDIIRRYFAK 119 (282)
T ss_dssp EEEEHHHHHHHTTTT
T ss_pred EEEEHHHHHHHHHhc
Confidence 9999999998 6654
No 59
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.35 E-value=2.4e-12 Score=138.76 Aligned_cols=144 Identities=11% Similarity=0.118 Sum_probs=110.2
Q ss_pred hhhhccchhhhc--cCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCC
Q 004131 579 YKMRQMTAKEAC--GAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPL 656 (772)
Q Consensus 579 ~~l~~l~v~diM--~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~ 656 (772)
..+++.+++|+| +++ ++++++++++.++++.|.+++++.+||+|++. ++++|+|+.+|++..+...........
T Consensus 30 ~~l~~~~v~dim~p~~~-v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~---~~~vGivt~~Dll~~l~~~~~~~~~~~ 105 (330)
T 2v8q_E 30 TFMKSHRCYDLIPTSSK-LVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK---QSFVGMLTITDFINILHRYYKSALVQI 105 (330)
T ss_dssp HHHHHSBGGGGSCSEEE-EEEEETTSBHHHHHHHHHHHTCSEEEEEETTT---TEEEEEEEHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHcCcHhhhccCCCc-EEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCC---CeEEEEEEHHHHHHHHHHHHhccccch
Confidence 346788999999 667 99999999999999999999999999999752 689999999999987643210000000
Q ss_pred CCCCCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEe
Q 004131 657 PCDTRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVV 736 (772)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVV 736 (772)
..+++..+ +. ..-.+.++|.+++.++++++++.+++++|++.+.+++||+
T Consensus 106 --------------------------~~l~~~~~--~~--~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vv 155 (330)
T 2v8q_E 106 --------------------------YELEEHKI--ET--WREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVI 155 (330)
T ss_dssp --------------------------CCGGGCBH--HH--HHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEE
T ss_pred --------------------------hHHhhccH--HH--HHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEE
Confidence 00000000 00 0011345688999999999999999999999999999999
Q ss_pred cC-CCeEEEEEeHhhhhhHhc
Q 004131 737 PR-ASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 737 d~-~g~lvGIITr~DLl~~~~ 756 (772)
|+ +|+++|+||++|++++..
T Consensus 156 d~~~~~~~Givt~~dl~~~~~ 176 (330)
T 2v8q_E 156 DPESGNTLYILTHKRILKFLK 176 (330)
T ss_dssp CTTTCCEEEEECHHHHHHHHH
T ss_pred eCCCCcEEEEEcHHHHHHHHH
Confidence 98 799999999999998774
No 60
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.34 E-value=2e-12 Score=139.45 Aligned_cols=133 Identities=14% Similarity=0.190 Sum_probs=104.6
Q ss_pred cchhhh--cc-CCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCC
Q 004131 584 MTAKEA--CG-AQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDT 660 (772)
Q Consensus 584 l~v~di--M~-~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~ 660 (772)
.+++++ |+ ++ +.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+++.+..+. +..
T Consensus 190 ~~v~~~~v~~~~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~----~~l~Giit~~dl~~~~~~~~-~~~------- 256 (330)
T 2v8q_E 190 KSLEELQIGTYAN-IAMVRTTTPVYVALGIFVQHRVSALPVVDEK----GRVVDIYSKFDVINLAAEKT-YNN------- 256 (330)
T ss_dssp SBHHHHTCSBCSS-CCCEETTCBHHHHHHHHHHHCCSEEEEECTT----SBEEEEEEGGGTGGGGGSSC-CCC-------
T ss_pred CCHHHhcccCcCC-ceEECCCCCHHHHHHHHHHcCCCeEEEECCC----CcEEEEEEHHHHHHHHhccc-ccc-------
Confidence 456666 65 66 8899999999999999999999999999976 89999999999976543221 000
Q ss_pred CCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 004131 661 RGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (772)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g 740 (772)
...++.++ ++.+..|.+++.++++++++.++.++|.+.+.+++||+|++|
T Consensus 257 --------------------~~~~v~~~----------~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g 306 (330)
T 2v8q_E 257 --------------------LDVSVTKA----------LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHD 306 (330)
T ss_dssp --------------------CSSBHHHH----------GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred --------------------ccCcHHHH----------HhccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCC
Confidence 00112221 111223468899999999999999999999999999999989
Q ss_pred eEEEEEeHhhhhhHhcCCC
Q 004131 741 RVIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 741 ~lvGIITr~DLl~~~~~~~ 759 (772)
+++|+||++|+++++.++.
T Consensus 307 ~l~Giit~~Dil~~~~~~~ 325 (330)
T 2v8q_E 307 VVKGIVSLSDILQALVLTG 325 (330)
T ss_dssp BEEEEEEHHHHHHHHHSSC
T ss_pred cEEEEEeHHHHHHHHHhhc
Confidence 9999999999999987654
No 61
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=99.33 E-value=7.4e-12 Score=140.16 Aligned_cols=185 Identities=18% Similarity=0.234 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHHH
Q 004131 78 FALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGYL 157 (772)
Q Consensus 78 ~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~l 157 (772)
..+++|+++|+++.+|+....+.++++.+. ....... ++....+.+++.+.+ .++.|+..|+|.+.++..+
T Consensus 239 ~~illGi~~Gl~g~~f~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~l~g~~~g~l-~~~~p~~~G~G~~~i~~~~ 309 (446)
T 4ene_A 239 LYLILGIIFGIFGPIFNKWVLGMQDLLHRV-----HGGNITK---WVLMGGAIGGLCGLL-GFVAPATSGGGFNLIPIAT 309 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTTCHHH---HHHHHHHHHHHHHHH-HHHCGGGSSCCSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccchhH---HHHHHHHHHHHHHHH-HHHhHhhcCCcHHHHHHHH
Confidence 467889999999999999988877654332 1111111 111222233334433 3456999999999898888
Q ss_pred ccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhhh
Q 004131 158 NGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCGC 237 (772)
Q Consensus 158 ~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~Ga 237 (772)
+|.. +-..-.-.++.|++.+.+|+++|.+.|...|+.-+||++|..+++.... ++.. ...+...++.+||
T Consensus 310 ~~~~-~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~p~--~~~~~~~~a~vGm 379 (446)
T 4ene_A 310 AGNF-SMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE-------LFPQ--YHLEAGTFAIAGM 379 (446)
T ss_dssp TTCS-CHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHH-------HCGG--GTCCHHHHHHHHH
T ss_pred cCCc-hHHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHH-------hCCc--cccCHHHHHHHHH
Confidence 7632 2112234578999999999999999999999999999999999863211 1111 1234568899999
Q ss_pred hhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHHH
Q 004131 238 AAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRS 284 (772)
Q Consensus 238 aAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~~ 284 (772)
||-++++.|+|++++++++|++.+ .....+.++++++|..+.+.
T Consensus 380 aa~~a~~~~aPlt~~vl~~Eltg~---~~~~lpl~ia~~ia~~v~~~ 423 (446)
T 4ene_A 380 GALLAASIRAPLTGIILVLEMTDN---YQLILPMIITGLGATLLAQF 423 (446)
T ss_dssp THHHHHHTCCHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHCC---hhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999975 34566777777777777654
No 62
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.32 E-value=1.9e-12 Score=147.33 Aligned_cols=119 Identities=16% Similarity=0.237 Sum_probs=103.2
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeC--CCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCC
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDH--SRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTR 661 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~--~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~ 661 (772)
++.++.|.++ ++++++++|+.++.+.|.+++++++||+|+ + ++++|+|+.+|++. . . .
T Consensus 113 ~~~~~~m~~d-~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~----~~lvGiVt~rDl~~---~-~----~------- 172 (511)
T 3usb_A 113 KRSESGVISD-PFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE----RKLVGIITNRDMRF---I-Q----D------- 172 (511)
T ss_dssp HTSSSCSSSS-CCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT----CBEEEEEEHHHHTT---C-C----C-------
T ss_pred hccccccccC-CEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC----CEEEEEEEehHhhh---h-c----c-------
Confidence 3456778888 899999999999999999999999999997 4 79999999999942 0 0 0
Q ss_pred CCCCCccccccccccccCCCCCCcccccCCcccccccccccccccC-CCceecCCCCHHHHHHHHHHcCCCEEEEecCCC
Q 004131 662 GGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP-SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS 740 (772)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~-~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g 740 (772)
...+++++|++ +++++++++++.++.++|++++.+.+||||++|
T Consensus 173 -----------------------------------~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g 217 (511)
T 3usb_A 173 -----------------------------------YSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNG 217 (511)
T ss_dssp -----------------------------------SSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTS
T ss_pred -----------------------------------CCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCC
Confidence 01235556988 899999999999999999999999999999999
Q ss_pred eEEEEEeHhhhhhHhcC
Q 004131 741 RVIGLITRKDLLIEDGE 757 (772)
Q Consensus 741 ~lvGIITr~DLl~~~~~ 757 (772)
+++|+||++|+++....
T Consensus 218 ~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 218 VLQGLITIKDIEKVIEF 234 (511)
T ss_dssp BEEEEEEHHHHHHHHHC
T ss_pred CEeeeccHHHHHHhhhc
Confidence 99999999999998765
No 63
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.31 E-value=3.1e-14 Score=162.45 Aligned_cols=177 Identities=16% Similarity=0.261 Sum_probs=35.2
Q ss_pred chhHHhHHHHHhcCCcchHHHHHHHHHHHHHHHhhcCcchHHHHHHhhCCCCCCCCc--hh----hhhccchhhhccCCc
Q 004131 521 MTVSLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLESRP--KY----KMRQMTAKEACGAQK 594 (772)
Q Consensus 521 ~pis~~vi~~E~Tg~~~~l~pimia~~va~~v~~~~~~~iy~~~l~~kg~p~L~~~~--~~----~l~~l~v~diM~~~~ 594 (772)
.|. -+-+..|+|+++.+..|++.+.+-. .....+...+.+..++.++.... +. ..+-.+++|+|+++
T Consensus 32 ~p~-~v~~~~eLt~~~~l~iP~is~~m~~-----v~~~~lA~al~~~GglG~i~~~~~~e~~~~~v~~v~~~~~iM~~~- 104 (494)
T 1vrd_A 32 LPK-DVKIDTRLTRQIRINIPLVSAAMDT-----VTEAALAKALAREGGIGIIHKNLTPDEQARQVSIVKKTENGIIYD- 104 (494)
T ss_dssp CGG-GSCCCEESSSSCEESSSEEECCCTT-----TCSHHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHHTC--------
T ss_pred CCC-ceEEEehhhCCCccCceeEecchHH-----HhHHHHHHHHHHcCCceEEecCCChHHHHHHHHhhhhHhhcCccC-
Confidence 344 4556779999998877875433211 11233444445544553332211 11 12234578999998
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCcccccccc
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEF 674 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (772)
++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++.. ..
T Consensus 105 ~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~----~~lvGivt~~Dl~~~---~~------------------------- 152 (494)
T 1vrd_A 105 PITVTPDMTVKEAIDLMAEYKIGGLPVVDEE----GRLVGLLTNRDVRFE---KN------------------------- 152 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEECCCCCHHHHHHHHHHcCceEEEEEcCC----CEEEEEEEHHHHHhh---cC-------------------------
Confidence 9999999999999999999999999999976 799999999999642 00
Q ss_pred ccccCCCCCCcccccCCcccccccccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhh
Q 004131 675 VKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLL 752 (772)
Q Consensus 675 ~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl 752 (772)
...+++++|++ ++.++++++++.++.++|.+.+++++||||++|+++|+||++|++
T Consensus 153 ----------------------~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll 210 (494)
T 1vrd_A 153 ----------------------LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIM 210 (494)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred ----------------------CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHH
Confidence 01234556988 899999999999999999999999999999999999999999999
Q ss_pred hHhcCC
Q 004131 753 IEDGED 758 (772)
Q Consensus 753 ~~~~~~ 758 (772)
+....+
T Consensus 211 ~~~~~~ 216 (494)
T 1vrd_A 211 SVIEHP 216 (494)
T ss_dssp HHHTCT
T ss_pred hhhccc
Confidence 988765
No 64
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.30 E-value=6.6e-12 Score=134.85 Aligned_cols=132 Identities=11% Similarity=0.115 Sum_probs=102.5
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCC-CCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCC
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSR-NGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~-~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~ 662 (772)
+++.++|.++ ++++++++++.++++.|.+++++.+||+|++. ++.++++|+|+.+|+++.+...... ..
T Consensus 114 ~~~~~~~~~~-~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~--~~------- 183 (323)
T 3t4n_C 114 ERALGVDQLD-TASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE--TH------- 183 (323)
T ss_dssp HHHTTC-----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG--GG-------
T ss_pred HHHhCCCCCC-ceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc--hh-------
Confidence 3456677888 99999999999999999999999999999751 1112499999999999876543200 00
Q ss_pred CCCCccccccccccccCCCCCCcccccCCccccccccccccc---ccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC
Q 004131 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPF---LNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA 739 (772)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~---m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~ 739 (772)
.....++++ |.+++.++++++++.++.++|.+.+.+++||+|++
T Consensus 184 ---------------------------------~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~ 230 (323)
T 3t4n_C 184 ---------------------------------FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN 230 (323)
T ss_dssp ---------------------------------GCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT
T ss_pred ---------------------------------hhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCC
Confidence 001123444 88899999999999999999999999999999998
Q ss_pred CeEEEEEeHhhhhhHhcCC
Q 004131 740 SRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 740 g~lvGIITr~DLl~~~~~~ 758 (772)
|+++|+||++|+++.+.+.
T Consensus 231 ~~~~Giit~~dl~~~~~~~ 249 (323)
T 3t4n_C 231 GYLINVYEAYDVLGLIKGG 249 (323)
T ss_dssp CBEEEEEETTHHHHHHHTT
T ss_pred CeEEEEEeHHHHHHHHhhc
Confidence 9999999999999987654
No 65
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=99.30 E-value=1.2e-11 Score=139.26 Aligned_cols=186 Identities=17% Similarity=0.241 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHH
Q 004131 76 WFFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKG 155 (772)
Q Consensus 76 w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~ 155 (772)
+...+++|+++|+++.+|+....+.++++.+. .....+.+++. .++.+++.+.+ .++.|+..|.|.+.++.
T Consensus 252 l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~i~gl~~g~l-~~~~P~~lG~G~~~i~~ 322 (465)
T 1ots_A 252 LWLYLILGIIFGIFGPIFNKWVLGMQDLLHRV-----HGGNITKWVLM---GGAIGGLCGLL-GFVAPATSGGGFNLIPI 322 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTTCHHHHHHH---HHHHHHHHHHH-HHHCGGGSSCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCCchhHHHH---HHHHHHHHHHH-HHHhHhhcCChHHHHHH
Confidence 34678999999999999999988887665332 11111111122 22334444444 34569999999988988
Q ss_pred HHccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHh
Q 004131 156 YLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTC 235 (772)
Q Consensus 156 ~l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~ 235 (772)
.+++. .+-....-.++.|++.+.+|+++|.+.|...|+.-+||++|..+++.... ++.. ...+...++.+
T Consensus 323 ~~~~~-~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~p~--~~~~~~~~alv 392 (465)
T 1ots_A 323 ATAGN-FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE-------LFPQ--YHLEAGTFAIA 392 (465)
T ss_dssp HHHTC-SCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHH-------HCGG--GTCCHHHHHHH
T ss_pred HHcCC-chHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHH-------HCCc--ccccHHHHHHH
Confidence 88862 22122344578999999999999999999999999999999999873111 1111 12345789999
Q ss_pred hhhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHH
Q 004131 236 GCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVR 283 (772)
Q Consensus 236 GaaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~ 283 (772)
||||-++++.|+|+++++.++|++.+ .....+.++++++|..+.+
T Consensus 393 Gmaa~~a~v~raPlt~ivlv~Eltg~---~~~llpl~ia~~iA~~v~~ 437 (465)
T 1ots_A 393 GMGALLAASIRAPLTGIILVLEMTDN---YQLILPMIITGLGATLLAQ 437 (465)
T ss_dssp HHTHHHHHTSCCHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999975 3445666666666666554
No 66
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.29 E-value=8.9e-12 Score=142.04 Aligned_cols=118 Identities=14% Similarity=0.228 Sum_probs=103.5
Q ss_pred chhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEe--CCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCC
Q 004131 585 TAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVID--HSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRG 662 (772)
Q Consensus 585 ~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd--~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~ 662 (772)
+++|+|.++ ++++++++++.++++.|.+++++.+||+| ++ ++++|+|+.+|++.. ..
T Consensus 91 ~~~~im~~~-~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~----~~lvGivt~~Dl~~~---~~------------- 149 (491)
T 1zfj_A 91 RSENGVIID-PFFLTPEHKVSEAEELMQRYRISGVPIVETLAN----RKLVGIITNRDMRFI---SD------------- 149 (491)
T ss_dssp HHTTTTSSS-CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT----CBEEEEEEHHHHHHC---SC-------------
T ss_pred hHHhcCcCC-CeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC----CEEEEEEEHHHHhhh---cc-------------
Confidence 457899998 99999999999999999999999999998 54 799999999999742 00
Q ss_pred CCCCccccccccccccCCCCCCcccccCCcccccccccccccccC-CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 004131 663 GSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNP-SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (772)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~-~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~ 741 (772)
...+++++|++ +++++++++++.+++++|.+++.+++||||++|+
T Consensus 150 ----------------------------------~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~ 195 (491)
T 1zfj_A 150 ----------------------------------YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGR 195 (491)
T ss_dssp ----------------------------------SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSB
T ss_pred ----------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 01234556988 8899999999999999999999999999999999
Q ss_pred EEEEEeHhhhhhHhcC
Q 004131 742 VIGLITRKDLLIEDGE 757 (772)
Q Consensus 742 lvGIITr~DLl~~~~~ 757 (772)
++|+||++|+++.+.+
T Consensus 196 lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 196 LSGLITIKDIEKVIEF 211 (491)
T ss_dssp EEEEEEHHHHHHHHHC
T ss_pred EEEEEEHHHHHHHHhc
Confidence 9999999999998875
No 67
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=99.27 E-value=1.3e-11 Score=138.52 Aligned_cols=182 Identities=16% Similarity=0.182 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCHHHHHHH
Q 004131 77 FFALLIGIGTGLAAVFINISVENFAGWKFSLTFSIIQKSYFAGFLVYILINLILVFSSVYIITKFAPAAAGSGIPEIKGY 156 (772)
Q Consensus 77 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGipev~~~ 156 (772)
.+.+++|+++|+++.+|+....+.++++.+. ...+++.. +.+.+++.+.+ .++.|+..|+|.+.++..
T Consensus 248 ~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~--------~~~~~~~~---~~l~g~~~g~l-~~~~p~~~G~G~~~i~~~ 315 (466)
T 3nd0_A 248 WMFIILGILFGVMGYTFNRGLFKVLDWFDRL--------PPLATKWK---GFLLGSIIGIL-SLFPLPLTDGGDNAVLWA 315 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------CHHHHHHH---HHHHHHHHHHH-TTSSSSCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------ccccHHHH---HHHHHHHHHHH-HHHHHHHcCCcHHHHHHH
Confidence 3567899999999999999888776543221 00111111 22334444444 456799999999999988
Q ss_pred HccccccCchhHHHHHHHHhhhhhhccccccccCcchHHHHHHHHHHHhhccCccccchhhhhhcccCChhhhhhHHHhh
Q 004131 157 LNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLRYRWLQVFRSDRDRRDLVTCG 236 (772)
Q Consensus 157 l~g~~~~~~l~~~~l~~K~~~~~~sv~sG~svG~EGP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~f~~~~~~r~li~~G 236 (772)
++|. .+-..-.-.++.|++.+.+|+++|.+.|...|+.-+||++|..+++.... ++.. ...+...++.+|
T Consensus 316 ~~~~-~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~-------~~p~--~~~~~~~~a~vG 385 (466)
T 3nd0_A 316 FNSQ-SHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHL-------LFPS--QIPEPAVMAIAG 385 (466)
T ss_dssp TTSC-CCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHH-------HCTT--TCSSTHHHHHHT
T ss_pred HcCC-ccHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHH-------hCCc--cccCHHHHHHHH
Confidence 8773 22112234678999999999999999999999999999999999873211 1110 124457899999
Q ss_pred hhhhhhhhhcCCccceeeeeeecchhhhhhhHHHHHHHHHHHHHHHH
Q 004131 237 CAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVR 283 (772)
Q Consensus 237 aaAgvaaaF~APigGvlFalE~~~~~~~~~~~~~~~~~~~va~~v~~ 283 (772)
|||-++++.|+|++++++++|++.+ .....+.++++++|..+.+
T Consensus 386 maa~~a~v~~aPlt~ivlv~Eltg~---~~~~lpl~ia~~iA~~v~~ 429 (466)
T 3nd0_A 386 MGALVAATVRAPLTAILLTIEMTDN---YFVILPLLVTCLVASVVAE 429 (466)
T ss_dssp TSHHHHHHHSCHHHHHHHHHHTTCC---CTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHCC---hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986 3445566666666665543
No 68
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.27 E-value=9e-13 Score=149.43 Aligned_cols=119 Identities=17% Similarity=0.269 Sum_probs=89.0
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCC
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~ 663 (772)
.+++++|.++ ++++++++++.++.+.|.+++++++||+|++ ++++|+|+.+||+. ..+
T Consensus 89 k~~~~~m~~d-~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~----~~lvGiVt~rDL~~--------~~~--------- 146 (496)
T 4fxs_A 89 KIFEAGVVTH-PVTVRPEQTIADVMELTHYHGFAGFPVVTEN----NELVGIITGRDVRF--------VTD--------- 146 (496)
T ss_dssp HHCCC--CBC-CCCBCSSSBHHHHHHHHTSSCCCEEEEECSS----SBEEEEEEHHHHTT--------CCC---------
T ss_pred cccccccccC-ceEECCCCCHHHHHHHHHHcCCcEEEEEccC----CEEEEEEEHHHHhh--------ccc---------
Confidence 3557889998 9999999999999999999999999999976 89999999999841 000
Q ss_pred CCCccccccccccccCCCCCCcccccCCccccccccccccccc-C-CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 004131 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLN-P-SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (772)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~-~-~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~ 741 (772)
...+++++|+ + +++++++++++.+++++|++++++.+||||++|+
T Consensus 147 ---------------------------------~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~ 193 (496)
T 4fxs_A 147 ---------------------------------LTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQ 193 (496)
T ss_dssp ---------------------------------TTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSB
T ss_pred ---------------------------------CCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 0123555688 4 5899999999999999999999999999999999
Q ss_pred EEEEEeHhhhhhHhcC
Q 004131 742 VIGLITRKDLLIEDGE 757 (772)
Q Consensus 742 lvGIITr~DLl~~~~~ 757 (772)
++|+||++|+++....
T Consensus 194 l~GiIT~~DIl~~~~~ 209 (496)
T 4fxs_A 194 LKGMITAKDFHKAESK 209 (496)
T ss_dssp CCEEECCC-----CCC
T ss_pred EEEeehHhHHHHhhcc
Confidence 9999999999987643
No 69
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.26 E-value=1.3e-14 Score=166.32 Aligned_cols=179 Identities=14% Similarity=0.224 Sum_probs=102.3
Q ss_pred HHhHHHHHhcCCcchHHHHHHHHHHHHHHHhhcCcchHHHHHHhhCCCCCCC--Cchhhh----hccchhhhccCCceEE
Q 004131 524 SLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLES--RPKYKM----RQMTAKEACGAQKVVS 597 (772)
Q Consensus 524 s~~vi~~E~Tg~~~~l~pimia~~va~~v~~~~~~~iy~~~l~~kg~p~L~~--~~~~~l----~~l~v~diM~~~~vv~ 597 (772)
+.+.+..|+|+++.+.+|+|.+.+-.. -...+.+.+...++..++.. .++... .-.+++|+|.++ +++
T Consensus 47 ~~v~l~~eLt~~~~~~iP~vsa~md~~-----t~~~la~~ia~~gg~gii~~~~t~e~~~~~v~~v~~~~~im~~~-~~~ 120 (514)
T 1jcn_A 47 DEVDLTSALTRKITLKTPLISSPMDTV-----TEADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKNFEQGFITD-PVV 120 (514)
T ss_dssp GGCBCCEESSSSCEESSCEEECCCTTT-----CSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHTCCTTSCSS-CCC
T ss_pred ceeEEEeeccCCeeEeceEEEEehhhh-----hhhhHHHHHHhcCCeeEEecCCCHHHHHHHHHhhhhhhhccccC-CEE
Confidence 567778899999998888775422110 02334555555555544432 112111 224678999988 999
Q ss_pred ecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccccccc
Q 004131 598 LPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKP 677 (772)
Q Consensus 598 v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (772)
+++++++.++.+.|.+++++.+||+|++. .+++++|+|+++|+..... ..
T Consensus 121 v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-~~~~lvGiVt~~Dl~~~~~-~~---------------------------- 170 (514)
T 1jcn_A 121 LSPSHTVGDVLEAKMRHGFSGIPITETGT-MGSKLVGIVTSRDIDFLAE-KD---------------------------- 170 (514)
T ss_dssp CCC-----------------CEESCC---------CCEECTTTTC-----------------------------------
T ss_pred ECCCCCHHHHHHHHHhcCCCEEEEEeCCC-cCCEEEEEEEHHHHHhhhh-cc----------------------------
Confidence 99999999999999999999999998720 0179999999999854210 00
Q ss_pred cCCCCCCcccccCCcccccccccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHh
Q 004131 678 ASSKGLSIDDIHLSSDDMEMYIDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (772)
Q Consensus 678 ~~~~~~~v~di~~~~~~~~~~idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (772)
...+++++|++ ++.++++++++.+++++|.+.+.+++||||++|+++|+||++|+++.+
T Consensus 171 -------------------~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 171 -------------------HTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR 231 (514)
T ss_dssp -----------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred -------------------CCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence 01235556988 899999999999999999999999999999999999999999999876
Q ss_pred cC
Q 004131 756 GE 757 (772)
Q Consensus 756 ~~ 757 (772)
..
T Consensus 232 ~~ 233 (514)
T 1jcn_A 232 DY 233 (514)
T ss_dssp CC
T ss_pred hC
Confidence 54
No 70
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.25 E-value=5.8e-11 Score=139.10 Aligned_cols=102 Identities=13% Similarity=0.005 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcCccCcccchhHHHHHHHHHHHHHH--HHHHhhhcCCCchHHHHHHHhhhhhhccccchhHHhHHHHH
Q 004131 454 LVMFYTLAVVTFGIAVPAGQFVPGIMIGSTYGRLVGM--FVVNFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVE 531 (772)
Q Consensus 454 ~~~k~~~t~~t~g~g~~gG~f~P~l~iGa~~G~l~g~--~~~~~~~~~~~~~~~~aliGaaa~l~g~~r~pis~~vi~~E 531 (772)
++.|++.+.+|.|+|.+.|.-.|++-+||++|..++. .+..... ...+......+||||-++++.++|++.+++.+|
T Consensus 105 ~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f~~~~~-~~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE 183 (632)
T 3org_A 105 LFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCT-DRALRLQTLAAACAVGLASSFGAPLGGVLYSIE 183 (632)
T ss_dssp HHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhhhhhccccC-CHHHHHHHHHHHHHHHHHHHhCCccHhHHHHHH
Confidence 4479999999999999999999999999999998887 6543211 012345788999999999999999999999999
Q ss_pred hcCC-c--chHHHHHHHHHHHHHHHhhc
Q 004131 532 ITNN-L--KFLPLIMLVLLISKAVGDAF 556 (772)
Q Consensus 532 ~Tg~-~--~~l~pimia~~va~~v~~~~ 556 (772)
.... + ..+.|.++++++|..+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~as~~a~~v~~~~ 211 (632)
T 3org_A 184 TIASFYLVQAFWKGVLSALSGAIVYELL 211 (632)
T ss_dssp HTCSEEETTHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 8753 2 34667788888888887755
No 71
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.21 E-value=1.4e-12 Score=147.77 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=3.7
Q ss_pred cchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCC
Q 004131 584 MTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (772)
Q Consensus 584 l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~ 663 (772)
.+++++|.++ ++++++++++.++.+.|.+++++.+||+| + ++++|+|+.+||.... .
T Consensus 88 k~~~~~m~~~-~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~----g~lvGIVt~rDl~~~~---~-------------- 144 (490)
T 4avf_A 88 KKHETAIVRD-PVTVTPSTKIIELLQMAREYGFSGFPVVE-Q----GELVGIVTGRDLRVKP---N-------------- 144 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCcccC-ceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C----CEEEEEEEhHHhhhcc---c--------------
Confidence 4568899998 99999999999999999999999999999 4 7999999999985210 0
Q ss_pred CCCccccccccccccCCCCCCcccccCCccccccccccccccc-C-CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCe
Q 004131 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLN-P-SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASR 741 (772)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~-~-~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~ 741 (772)
...+++++|+ + ++.++++++++.++.++|.+++++.+||||++|+
T Consensus 145 ---------------------------------~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~ 191 (490)
T 4avf_A 145 ---------------------------------AGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFY 191 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------cCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 0123455688 4 6899999999999999999999999999999999
Q ss_pred EEEEEeHhhhhhHhcC
Q 004131 742 VIGLITRKDLLIEDGE 757 (772)
Q Consensus 742 lvGIITr~DLl~~~~~ 757 (772)
++|+||++|+++....
T Consensus 192 lvGiIT~~Dil~~~~~ 207 (490)
T 4avf_A 192 LRGLVTFRDIEKAKTY 207 (490)
T ss_dssp ---------------C
T ss_pred EEEEEehHHhhhhccC
Confidence 9999999999997643
No 72
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.20 E-value=1.7e-12 Score=147.83 Aligned_cols=128 Identities=16% Similarity=0.170 Sum_probs=5.9
Q ss_pred hhccchhhh-ccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCC
Q 004131 581 MRQMTAKEA-CGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCD 659 (772)
Q Consensus 581 l~~l~v~di-M~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~ 659 (772)
+++++..++ |+++ ++++++++|+.++++.|.+++++.+||+|++. ..++++|+|+.+|++.. ...
T Consensus 93 v~~V~~~e~gM~~~-~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~-~~g~lvGiVt~~Dl~~~--~~~---------- 158 (503)
T 1me8_A 93 VHAVKNFKAGFVVS-DSNVKPDQTFADVLAISQRTTHNTVAVTDDGT-PHGVLLGLVTQRDYPID--LTQ---------- 158 (503)
T ss_dssp HHHHHTTTC-----------------------------------------------------------------------
T ss_pred HhhhhhcccCcccC-CeEECCCCcHHHHHHHHHHcCceEEEEEECCC-cCCeEEEEEEHHHHHhh--hcc----------
Confidence 345555666 9998 99999999999999999999999999998620 01689999999999742 000
Q ss_pred CCCCCCCccccccccccccCCCCCCcccccCCcccccccccccccccCC--CceecCCCCHHHHHHHHHHcCCCEEEEec
Q 004131 660 TRGGSKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVP 737 (772)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~--p~~V~~~~sL~~a~~lf~~~glr~lpVVd 737 (772)
...+++++|+++ +.++++++++.+++++|++++.+++||||
T Consensus 159 -------------------------------------~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVD 201 (503)
T 1me8_A 159 -------------------------------------TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID 201 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 012345569887 99999999999999999999999999999
Q ss_pred CCCeEEEEEeHhhhhhHhcCCC
Q 004131 738 RASRVIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 738 ~~g~lvGIITr~DLl~~~~~~~ 759 (772)
++|+++|+||++|+++.+....
T Consensus 202 e~g~lvGiIT~~Dil~~~~~~~ 223 (503)
T 1me8_A 202 DDQHLRYIVFRKDYDRSQVCHN 223 (503)
T ss_dssp --------------------CC
T ss_pred CCCeEEEEEEecHHHHhhhccc
Confidence 9999999999999999876543
No 73
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.17 E-value=9.9e-11 Score=126.24 Aligned_cols=132 Identities=7% Similarity=0.162 Sum_probs=101.8
Q ss_pred hhhccCCce--EEecCcccHHHHHHHHhhCCCCeeEEEeCCC-CCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCC
Q 004131 587 KEACGAQKV--VSLPRIIKVADVVSILRTNKHNGFPVIDHSR-NGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGG 663 (772)
Q Consensus 587 ~diM~~~~v--v~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~-~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~ 663 (772)
+++|.++ + +++++++++.++++.|.+++++.+||+|++. .+.+.++|+|+.+|+++.+.... .....
T Consensus 110 ~~im~~~-~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~-~~~~~-------- 179 (334)
T 2qrd_G 110 RKIGAIP-PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNC-KETAM-------- 179 (334)
T ss_dssp HHHTCSC-SSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHC-GGGGG--------
T ss_pred HhhccCC-CceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhc-cchhh--------
Confidence 4567776 6 8999999999999999999999999998741 01122999999999998765321 00000
Q ss_pred CCCccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEE
Q 004131 664 SKPISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVI 743 (772)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lv 743 (772)
...++.+ +..+|++++.++++++++.++.++|.+.+.+++||+|++|+++
T Consensus 180 -----------------~~~~v~~-------------l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~ 229 (334)
T 2qrd_G 180 -----------------LRVPLNQ-------------MTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLL 229 (334)
T ss_dssp -----------------CCCBGGG-------------SSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEE
T ss_pred -----------------hhCcHHH-------------hCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEE
Confidence 0001111 1224888999999999999999999999999999999889999
Q ss_pred EEEeHhhhhhHhcCC
Q 004131 744 GLITRKDLLIEDGED 758 (772)
Q Consensus 744 GIITr~DLl~~~~~~ 758 (772)
|+||++|+++.+.+.
T Consensus 230 Giit~~dl~~~~~~~ 244 (334)
T 2qrd_G 230 NVYESVDVMHLIQDG 244 (334)
T ss_dssp EEEETHHHHHHHTTS
T ss_pred EEEEHHHHHHHhhcc
Confidence 999999999987653
No 74
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.13 E-value=4.6e-12 Score=140.24 Aligned_cols=117 Identities=17% Similarity=0.266 Sum_probs=0.8
Q ss_pred hhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCC
Q 004131 587 KEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKP 666 (772)
Q Consensus 587 ~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~ 666 (772)
+..|..+ ++++.++.|+.|+.+++.+++++++||+|+.. .+++|+|+||.+|+.. .+ .
T Consensus 141 e~g~i~d-Pvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~-~~~kLvGIvT~RD~rf--------~d-~----------- 198 (556)
T 4af0_A 141 ENGFITD-PLCLGPDATVGDVLEIKAKFGFCGVPITETGE-PDSKLLGIVTGRDVQF--------QD-A----------- 198 (556)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ccCccCC-CeEcCCCCCHHHHHHHHHHhCCCccccccccC-cCCEEEEEEecccccc--------cc-c-----------
Confidence 3457778 89999999999999999999999999998731 2379999999999852 10 0
Q ss_pred ccccccccccccCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEE
Q 004131 667 ISHSFSEFVKPASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLI 746 (772)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGII 746 (772)
...++++|+++.++++++.++++|.++|.++++..+||||++|+++|+|
T Consensus 199 -------------------------------~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlI 247 (556)
T 4af0_A 199 -------------------------------ETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLV 247 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------ceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEE
Confidence 1224555999999999999999999999999999999999999999999
Q ss_pred eHhhhhhHhc
Q 004131 747 TRKDLLIEDG 756 (772)
Q Consensus 747 Tr~DLl~~~~ 756 (772)
|++|+.+...
T Consensus 248 T~kDi~k~~~ 257 (556)
T 4af0_A 248 ARSDLLKNQN 257 (556)
T ss_dssp ----------
T ss_pred Eechhhhhhh
Confidence 9999988654
No 75
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.12 E-value=3.2e-13 Score=153.44 Aligned_cols=170 Identities=16% Similarity=0.235 Sum_probs=27.2
Q ss_pred HHhHHHHHhcCCcchHHHHHHHHHHHHHHHhhcCcchHHHHHHhhCCCCCCC-----Cchhhhh-ccchhhhccCCceEE
Q 004131 524 SLCVIMVEITNNLKFLPLIMLVLLISKAVGDAFSEGLYEEQAHLRGVPLLES-----RPKYKMR-QMTAKEACGAQKVVS 597 (772)
Q Consensus 524 s~~vi~~E~Tg~~~~l~pimia~~va~~v~~~~~~~iy~~~l~~kg~p~L~~-----~~~~~l~-~l~v~diM~~~~vv~ 597 (772)
+.+.+..|+|+++.+..|+|.+.+.+ ++ ...+....-+..+...++. +....++ -.+.+|.|..+ +++
T Consensus 32 ~~v~l~t~lt~~l~l~~PIi~a~m~~--vt---~~ela~ava~~GglG~i~~~~~~e~~~~~I~~v~~~~~~m~~~-~~~ 105 (486)
T 2cu0_A 32 KDVDVSTRITPNVKLNIPILSAAMDT--VT---EWEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKRAERLIVED-VIT 105 (486)
T ss_dssp TTCBCCEEEETTEEESSSEEECCCTT--TC---SHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHHTCC----------
T ss_pred ceEEEEeeecCCcccccceEEcccee--ec---HHHHHHHHHhcCCceeecCCCCHHHHHHHHHhhcchhhccccC-ceE
Confidence 45667789999999888887654321 00 1112222222223322221 1111122 23457789988 999
Q ss_pred ecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcccccCCCCCCCCCCCCCCCccccccccccc
Q 004131 598 LPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKVDFQHSPLPCDTRGGSKPISHSFSEFVKP 677 (772)
Q Consensus 598 v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (772)
+++++++.++.+.|++++++.+||+|+ ++++|+|+.+|++. + .
T Consensus 106 v~~~~tv~ea~~~~~~~~~~~~pVvd~-----~~lvGivt~~Dl~~---~-~---------------------------- 148 (486)
T 2cu0_A 106 IAPDETVDFALFLMEKHGIDGLPVVED-----EKVVGIITKKDIAA---R-E---------------------------- 148 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECCCCCHHHHHHHHHHcCCcEEEEEEC-----CEEEEEEEHHHhcc---C-C----------------------------
Confidence 999999999999999999999999986 58999999999863 1 0
Q ss_pred cCCCCCCcccccCCcccccccccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 678 ASSKGLSIDDIHLSSDDMEMYIDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 678 ~~~~~~~v~di~~~~~~~~~~idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
..+++++|++++.++++++++.+++++|++.+.+.+||||++|+++|+||++|+++...
T Consensus 149 --------------------~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 149 --------------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK 207 (486)
T ss_dssp ------------------------------------------------------------------------------C
T ss_pred --------------------CCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence 01244558888999999999999999999999999999999999999999999999865
No 76
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=98.51 E-value=1.4e-07 Score=91.18 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=54.5
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
++++++|+++++++++++++.+|.++|.+++.+++||+|++|+++|+||.+|+++....
T Consensus 18 ~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~ 76 (170)
T 4esy_A 18 VPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIP 76 (170)
T ss_dssp SBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCC
T ss_pred CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhh
Confidence 45777799999999999999999999999999999999999999999999999987543
No 77
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.50 E-value=2.2e-07 Score=75.95 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=43.3
Q ss_pred ceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHH
Q 004131 594 KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLL 645 (772)
Q Consensus 594 ~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L 645 (772)
|++++++++++.++.+.|.+++++++||+|+ ++++|++|.+|+.+.+
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~-----~~lvGIvT~~Di~~~~ 47 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG-----DEILGVVTERDILDKV 47 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET-----TEEEEEEEHHHHHHHT
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC-----CEEEEEEEHHHHHHHH
Confidence 5889999999999999999999999999986 7899999999997654
No 78
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.43 E-value=4e-07 Score=74.45 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=44.0
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 709 p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
+++++|++++.+|.++|.+++++++||+|+ |+++||||.+|+++....
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~-~~lvGIvT~~Di~~~~~~ 49 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 478999999999999999999999999986 999999999999876543
No 79
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.30 E-value=9.8e-07 Score=90.54 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=55.4
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcCCC
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGEDS 759 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~~ 759 (772)
..++++|++++.++++++++.+|+++|.+.+++++||+|++|+++|+||.+|+++++.+..
T Consensus 7 ~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~ 67 (245)
T 3l2b_A 7 LKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIW 67 (245)
T ss_dssp CBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCC
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhh
Confidence 3466679999999999999999999999999999999999899999999999999886543
No 80
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.29 E-value=6.4e-07 Score=90.10 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=54.5
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhc
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~ 647 (772)
+.+++|+|+++ ++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+++.+..
T Consensus 71 ~~~v~~im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----g~lvGiit~~Dil~~~~~ 130 (213)
T 1vr9_A 71 DSSVFNKVSLP-DFFVHEEDNITHALLLFLEHQEPYLPVVDEE----MRLKGAVSLHDFLEALIE 130 (213)
T ss_dssp TSBSGGGCBCT-TCCEETTSBHHHHHHHHHHCCCSEEEEECTT----CBEEEEEEHHHHHHHHHH
T ss_pred CCcHHHHccCC-CEEECCCCcHHHHHHHHHHhCCCEEEEEcCC----CEEEEEEEHHHHHHHHHH
Confidence 34699999998 9999999999999999999999999999976 899999999999987654
No 81
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.27 E-value=1.3e-06 Score=70.89 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=45.2
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcCC
Q 004131 709 PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 709 p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~ 758 (772)
+.++++++++.++.++|++.+.+++||+|+ |+++|+||++|+++.+.++
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~~~~ 50 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAK 50 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHc
Confidence 468999999999999999999999999998 9999999999999987543
No 82
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=98.21 E-value=2.4e-06 Score=80.37 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=54.7
Q ss_pred ccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcCC
Q 004131 699 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 699 idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~ 758 (772)
..++++|++ ++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++...+.
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~ 89 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTG 89 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSS
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcC
Confidence 356777999 899999999999999999999999999999889999999999999987653
No 83
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=98.21 E-value=1.8e-06 Score=78.92 Aligned_cols=59 Identities=14% Similarity=0.054 Sum_probs=53.5
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcCC
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~~ 758 (772)
+.++++|++++.++++++++.++.+.|++.+.+++||+|+ |+++|+||++|+.+...+.
T Consensus 5 ~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~ 63 (128)
T 3gby_A 5 VTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGW 63 (128)
T ss_dssp CBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSS
T ss_pred eEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhC
Confidence 3456679999999999999999999999999999999999 9999999999999876543
No 84
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=98.18 E-value=2.1e-06 Score=81.94 Aligned_cols=58 Identities=21% Similarity=0.483 Sum_probs=52.8
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
+.++++|++++.++++++++.+|.++|++.+.+++||+|++|+++|+||++|+++...
T Consensus 5 ~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~ 62 (160)
T 2o16_A 5 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQE 62 (160)
T ss_dssp CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred CcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Confidence 3456679999999999999999999999999999999998899999999999998754
No 85
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.17 E-value=5.1e-06 Score=67.23 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=43.4
Q ss_pred eEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHh
Q 004131 595 VVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQ 646 (772)
Q Consensus 595 vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~ 646 (772)
++++++++++.++++.|.+++++.+||+|+ ++++|+|+++|+.+.+.
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-----~~l~Givt~~dl~~~~~ 48 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-----DEILGVVTERDILDKVV 48 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-----TEEEEEEEHHHHHHHTT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-----CEEEEEEEHHHHHHHHH
Confidence 788999999999999999999999999996 68999999999988653
No 86
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=98.16 E-value=1.8e-06 Score=77.98 Aligned_cols=57 Identities=16% Similarity=0.344 Sum_probs=52.5
Q ss_pred ccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 701 l~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
++++|++++.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|+++...+
T Consensus 3 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~ 59 (122)
T 3kpb_A 3 VKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ 59 (122)
T ss_dssp HHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT
T ss_pred hHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 455699999999999999999999999999999999988999999999999987654
No 87
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=98.16 E-value=1.7e-06 Score=79.05 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=51.2
Q ss_pred ccccccCC--CceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHhcC
Q 004131 701 LGPFLNPS--PYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 701 l~~~m~~~--p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~~ 757 (772)
++++|.+. +.++++++++.++.++|++.+.+++||+|++ |+++|+||.+|+++...+
T Consensus 5 v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~ 64 (127)
T 3nqr_A 5 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS 64 (127)
T ss_dssp HHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST
T ss_pred HHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc
Confidence 45568854 8899999999999999999999999999998 899999999999987653
No 88
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=98.15 E-value=4e-06 Score=77.90 Aligned_cols=59 Identities=17% Similarity=0.338 Sum_probs=53.6
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCC--eEEEEEeHhhhhhHhcC
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS--RVIGLITRKDLLIEDGE 757 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g--~lvGIITr~DLl~~~~~ 757 (772)
+.++++|++++.++++++++.++.++|.+.+.+++||+|++| +++|+||++|+++.+.+
T Consensus 5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~ 65 (141)
T 2rih_A 5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ 65 (141)
T ss_dssp CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHT
T ss_pred eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhc
Confidence 446677999999999999999999999999999999999977 99999999999987644
No 89
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=98.15 E-value=2.8e-06 Score=79.72 Aligned_cols=58 Identities=16% Similarity=0.287 Sum_probs=52.9
Q ss_pred ccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHhc
Q 004131 699 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 756 (772)
Q Consensus 699 idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~ 756 (772)
..++++|++ ++.++++++++.++.++|++.+.+++||+|++ |+++|+||++|+++...
T Consensus 23 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~ 83 (148)
T 3lv9_A 23 KKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI 83 (148)
T ss_dssp CBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHH
T ss_pred CCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHh
Confidence 446677998 89999999999999999999999999999998 89999999999998754
No 90
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=98.14 E-value=3.8e-06 Score=77.59 Aligned_cols=56 Identities=14% Similarity=0.319 Sum_probs=50.9
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
..++++|.+++.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|+++.
T Consensus 7 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~ 62 (138)
T 2yzi_A 7 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRR 62 (138)
T ss_dssp SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred hhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Confidence 34566799999999999999999999999999999999988999999999999843
No 91
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=98.12 E-value=4.1e-06 Score=77.27 Aligned_cols=59 Identities=12% Similarity=0.244 Sum_probs=52.9
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhh-hhHhcC
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDL-LIEDGE 757 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DL-l~~~~~ 757 (772)
..++++|++++.++++++++.++.++|++.+.+++||+|++|+++|+||++|+ .+...+
T Consensus 8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~ 67 (138)
T 2p9m_A 8 IKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRD 67 (138)
T ss_dssp CBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTT
T ss_pred CCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence 34566799999999999999999999999999999999988999999999999 876543
No 92
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=98.10 E-value=3.1e-06 Score=77.50 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=51.0
Q ss_pred ccccccc--CCCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHhc
Q 004131 700 DLGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 756 (772)
Q Consensus 700 dl~~~m~--~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~ 756 (772)
.++++|+ +++.++++++++.++.++|++.+.+++||+|++ |+++|+||.+|+++...
T Consensus 6 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~ 65 (129)
T 3jtf_A 6 TVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML 65 (129)
T ss_dssp BHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT
T ss_pred CHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc
Confidence 3556688 567899999999999999999999999999986 89999999999998764
No 93
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=98.09 E-value=3.9e-06 Score=86.38 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=52.1
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCC--CeEEEEEeHhhhhhHhc
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA--SRVIGLITRKDLLIEDG 756 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~--g~lvGIITr~DLl~~~~ 756 (772)
+.++++|++++++|.+++++.++.++|.+.+++++||||++ ++++|+||++||++++.
T Consensus 13 ~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~ 72 (250)
T 2d4z_A 13 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQ 72 (250)
T ss_dssp CBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred CChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHH
Confidence 34566699999999999999999999999999999999974 68999999999998654
No 94
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=98.09 E-value=6e-06 Score=78.57 Aligned_cols=57 Identities=26% Similarity=0.419 Sum_probs=51.4
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
+.++++|++ ++++++++++.+|.++|.+.+.+++||+|++|+++|+||.+|+++...
T Consensus 17 ~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 73 (159)
T 3fv6_A 17 LQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASI 73 (159)
T ss_dssp CBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHT
T ss_pred CCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhh
Confidence 456667987 679999999999999999999999999998899999999999999763
No 95
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=98.08 E-value=3.1e-06 Score=76.64 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=51.0
Q ss_pred ccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 701 l~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
++++|++++.++++++++.++.++|.+.+.+++||+| +|+++|+||++|+++...+
T Consensus 3 v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~ 58 (125)
T 1pbj_A 3 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAE 58 (125)
T ss_dssp HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred HHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhc
Confidence 4566999999999999999999999999999999999 7999999999999987643
No 96
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=98.08 E-value=4.6e-06 Score=77.22 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=50.7
Q ss_pred cccccc--CCCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHhc
Q 004131 701 LGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 756 (772)
Q Consensus 701 l~~~m~--~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~ 756 (772)
++++|+ +++.++++++++.++.++|++.+.+++||+|++ |+++|+||.+|+++...
T Consensus 5 v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~ 63 (136)
T 3lfr_A 5 VRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLIL 63 (136)
T ss_dssp HHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGG
T ss_pred hHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH
Confidence 455688 567899999999999999999999999999987 89999999999998865
No 97
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=98.07 E-value=4.4e-06 Score=78.41 Aligned_cols=59 Identities=17% Similarity=0.074 Sum_probs=53.0
Q ss_pred ccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 699 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 699 idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
+.++++|++ ++.++++++++.++.+.|.+.+.+++||+|++|+++|+||++|+++...+
T Consensus 15 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~ 75 (150)
T 3lqn_A 15 IFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILG 75 (150)
T ss_dssp CBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBC
T ss_pred CChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 456677984 58999999999999999999999999999988999999999999988753
No 98
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=98.05 E-value=6.6e-06 Score=75.42 Aligned_cols=57 Identities=18% Similarity=0.401 Sum_probs=51.8
Q ss_pred cccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 700 dl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
.++++|++++.++++++++.++.+.|.+.+.+++||+| +|+++|+||++|+++...+
T Consensus 5 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~ 61 (133)
T 2ef7_A 5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGK 61 (133)
T ss_dssp BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHT
T ss_pred cHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhc
Confidence 45666999999999999999999999999999999999 6999999999999987654
No 99
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=98.02 E-value=6.1e-06 Score=78.04 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=52.9
Q ss_pred ccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 699 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 699 idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
..++++|.+ ++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++...+
T Consensus 11 ~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~ 71 (157)
T 2emq_A 11 MTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILG 71 (157)
T ss_dssp CBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBC
T ss_pred CcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhc
Confidence 345666886 88899999999999999999999999999988999999999999987654
No 100
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=98.02 E-value=4.3e-06 Score=79.45 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=53.5
Q ss_pred ccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 699 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 699 idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
..++++|.+ ++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++...+
T Consensus 14 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~ 74 (159)
T 1yav_A 14 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG 74 (159)
T ss_dssp CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBC
T ss_pred hhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhh
Confidence 345667988 89999999999999999999999999999988999999999999988754
No 101
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=98.01 E-value=3.3e-06 Score=77.45 Aligned_cols=59 Identities=14% Similarity=0.322 Sum_probs=51.2
Q ss_pred cccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHhcCC
Q 004131 700 DLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 700 dl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~~~ 758 (772)
.++++|++ ...++++++++.++.++|++.+.+++||+|++ |+++|+||.+|+++...+.
T Consensus 7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~ 68 (130)
T 3i8n_A 7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSG 68 (130)
T ss_dssp CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTT
T ss_pred CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcC
Confidence 35556885 45589999999999999999999999999987 8999999999999987543
No 102
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=98.00 E-value=7.2e-06 Score=76.74 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=50.7
Q ss_pred ccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 699 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 699 idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
+.++++|.+ ++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++.
T Consensus 5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~ 62 (152)
T 4gqw_A 5 YTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLAL 62 (152)
T ss_dssp SBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTC
T ss_pred EEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHh
Confidence 345566988 78999999999999999999999999999998999999999999864
No 103
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=98.00 E-value=6.4e-06 Score=78.33 Aligned_cols=59 Identities=17% Similarity=0.297 Sum_probs=53.2
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC--CCeEEEEEeHhhhhhHhcC
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR--ASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~--~g~lvGIITr~DLl~~~~~ 757 (772)
..++++|++++.++++++++.++.++|.+.+.+++||+|+ +|+++|+||++|+++...+
T Consensus 13 ~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~ 73 (164)
T 2pfi_A 13 VRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQA 73 (164)
T ss_dssp CBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC
T ss_pred CCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHh
Confidence 3456679999999999999999999999999999999996 6999999999999987743
No 104
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=97.99 E-value=5.1e-06 Score=78.58 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=50.8
Q ss_pred ccccccc--CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 700 DLGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 700 dl~~~m~--~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
.++++|. +++.++++++++.++.++|.+.+.+++||+|++|+++|+||.+|+++...
T Consensus 16 ~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~ 74 (156)
T 3ctu_A 16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQM 74 (156)
T ss_dssp TGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHH
T ss_pred HHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHH
Confidence 3556688 67899999999999999999999999999998899999999999998764
No 105
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=97.98 E-value=5.5e-06 Score=78.89 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=49.0
Q ss_pred ccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 701 LGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 701 l~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
++.+|.+ +..++++++|+.+|+++|.+.+.+++||+|++|+++|+||.+|++++..
T Consensus 17 ~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~ 74 (156)
T 3k6e_A 17 EETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQM 74 (156)
T ss_dssp GGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHH
T ss_pred HHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhh
Confidence 4455764 5789999999999999999999999999999999999999999988764
No 106
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=97.98 E-value=5.4e-06 Score=76.14 Aligned_cols=58 Identities=5% Similarity=0.011 Sum_probs=50.9
Q ss_pred cccccc--CCCceecCCCCHHHHHHHHHHcCCCEEEEecC-CCeEEEEEeHhhhhhHhcCC
Q 004131 701 LGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR-ASRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 701 l~~~m~--~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~-~g~lvGIITr~DLl~~~~~~ 758 (772)
++++|. +++.++++++++.++.++|++.+.+++||+|+ +|+++|+||.+|+++...+.
T Consensus 4 v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~ 64 (130)
T 3hf7_A 4 VNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK 64 (130)
T ss_dssp HHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS
T ss_pred HHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc
Confidence 455685 36789999999999999999999999999976 58999999999999987653
No 107
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=97.98 E-value=4.3e-06 Score=76.73 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=51.2
Q ss_pred cccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh-Hhc
Q 004131 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI-EDG 756 (772)
Q Consensus 700 dl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~-~~~ 756 (772)
.++++|.+++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++ ...
T Consensus 9 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 66 (133)
T 1y5h_A 9 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLA 66 (133)
T ss_dssp CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGG
T ss_pred CHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHh
Confidence 456679899999999999999999999999999999988899999999999984 443
No 108
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=97.98 E-value=1.3e-05 Score=74.31 Aligned_cols=54 Identities=9% Similarity=0.036 Sum_probs=50.4
Q ss_pred cccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 704 FLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 704 ~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
+|.+++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++...+
T Consensus 16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 69 (144)
T 2nyc_A 16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 69 (144)
T ss_dssp CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcc
Confidence 688889999999999999999999999999999988999999999999987654
No 109
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=97.97 E-value=7.9e-06 Score=77.53 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=52.2
Q ss_pred ccccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCC-eEEEEEeHhhhhhHhcC
Q 004131 699 IDLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRAS-RVIGLITRKDLLIEDGE 757 (772)
Q Consensus 699 idl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g-~lvGIITr~DLl~~~~~ 757 (772)
..++++|++ ++.++++++++.++.++|++.+.+++||+|+++ +++|+||.+|+++...+
T Consensus 38 ~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~ 99 (156)
T 3oi8_A 38 LEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN 99 (156)
T ss_dssp CBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC
T ss_pred CCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc
Confidence 345667986 688999999999999999999999999999874 99999999999988644
No 110
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=97.97 E-value=9.8e-06 Score=79.11 Aligned_cols=58 Identities=10% Similarity=0.155 Sum_probs=53.0
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
+.++++|++++.++++++++.+|.++|.+.+.+++||+|++|+++|+||.+|+++...
T Consensus 9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~ 66 (184)
T 1pvm_A 9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI 66 (184)
T ss_dssp CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Confidence 3466679999999999999999999999999999999998899999999999998754
No 111
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=97.96 E-value=8.4e-06 Score=78.76 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=53.0
Q ss_pred cccccccc--CCCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHhcCC
Q 004131 699 IDLGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDGED 758 (772)
Q Consensus 699 idl~~~m~--~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~~~ 758 (772)
..++++|. +++.++++++++.++.++|++.+.+++||+|++ ++++|+||.+|+++...+.
T Consensus 42 ~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~ 104 (172)
T 3lhh_A 42 RTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG 104 (172)
T ss_dssp -CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT
T ss_pred CCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc
Confidence 34566798 678899999999999999999999999999988 9999999999999987543
No 112
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=97.92 E-value=7.4e-06 Score=78.44 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=52.3
Q ss_pred ccccccccC---CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhc
Q 004131 699 IDLGPFLNP---SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 699 idl~~~m~~---~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~ 756 (772)
+.++++|++ ++.++++++++.++.++|.+.+.+++||+|++|+++|+||++|+++.+.
T Consensus 24 ~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 84 (165)
T 3fhm_A 24 TFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVA 84 (165)
T ss_dssp CBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred cCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence 456667985 6899999999999999999999999999998899999999999998754
No 113
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=97.91 E-value=9.6e-06 Score=78.83 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=52.3
Q ss_pred cccccccccCC----Ccee--cCCCCHHHHHHHHHHcCCCEEEEe--cCCCeEEEEEeHhhhhhHhc
Q 004131 698 YIDLGPFLNPS----PYVV--PEDMSLSKVYNLFRQLGLRHIFVV--PRASRVIGLITRKDLLIEDG 756 (772)
Q Consensus 698 ~idl~~~m~~~----p~~V--~~~~sL~~a~~lf~~~glr~lpVV--d~~g~lvGIITr~DLl~~~~ 756 (772)
...++++|.+. +.++ ++++++.+|.++|.+.+.+++||+ |++|+++|+||++|+++...
T Consensus 10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~ 76 (185)
T 2j9l_A 10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIE 76 (185)
T ss_dssp CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHH
Confidence 34566679887 7889 999999999999999999999999 77899999999999998754
No 114
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=97.89 E-value=7.7e-06 Score=79.09 Aligned_cols=55 Identities=22% Similarity=0.374 Sum_probs=50.3
Q ss_pred cccccccC--CCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 700 DLGPFLNP--SPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 700 dl~~~m~~--~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
.++++|.+ ++.++++++++.+|.++|.+.+.+++||+|++|+++|+||++|+++.
T Consensus 5 ~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~ 61 (180)
T 3sl7_A 5 TVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLAL 61 (180)
T ss_dssp BHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC
T ss_pred eHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhh
Confidence 45566888 78999999999999999999999999999988999999999999863
No 115
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=97.86 E-value=1.4e-05 Score=73.55 Aligned_cols=55 Identities=13% Similarity=0.266 Sum_probs=49.9
Q ss_pred ccccccc---CCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHh
Q 004131 700 DLGPFLN---PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIED 755 (772)
Q Consensus 700 dl~~~m~---~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~ 755 (772)
.++++|+ +++.++++++++.++.+.|.+.+.+++||+| +|+++|+||++|+++..
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~ 64 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKS 64 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHG
T ss_pred eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHH
Confidence 4566698 8899999999999999999999999999999 69999999999999643
No 116
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=97.86 E-value=1.4e-05 Score=75.70 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=51.3
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCE-EEEecCCCeEEEEEeHhhhhhHh
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRH-IFVVPRASRVIGLITRKDLLIED 755 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~-lpVVd~~g~lvGIITr~DLl~~~ 755 (772)
..++++|.+++.++++++++.+|.++|.+.+.+. +||+|++ +++|+||++|+++..
T Consensus 16 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~ 72 (157)
T 1o50_A 16 KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVS 72 (157)
T ss_dssp HHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHH
T ss_pred ccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHH
Confidence 3456679999999999999999999999999999 9999997 999999999999864
No 117
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=97.83 E-value=2.4e-05 Score=73.64 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=49.6
Q ss_pred cccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhhHhcC
Q 004131 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 700 dl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~~~~~ 757 (772)
.++++ +++.++++++++.+|.++|.+.+.+++||+|++|+++|+||++|+++...+
T Consensus 24 ~v~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~ 79 (152)
T 2uv4_A 24 QIGTY--ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAE 79 (152)
T ss_dssp TCSBC--SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred cCCcc--CCceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcc
Confidence 34444 677899999999999999999999999999988999999999999987654
No 118
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=97.80 E-value=2.4e-05 Score=75.75 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=50.4
Q ss_pred ccccccc--CCCceecCCCCHHHHHHHHHHcCCCEEEEecCC-CeEEEEEeHhhhhhHhc
Q 004131 700 DLGPFLN--PSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRA-SRVIGLITRKDLLIEDG 756 (772)
Q Consensus 700 dl~~~m~--~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~-g~lvGIITr~DLl~~~~ 756 (772)
.++++|. ++++++++++++.++.++|++.+.+++||+|++ |+++|+||.+|+++...
T Consensus 37 ~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~ 96 (173)
T 3ocm_A 37 SIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLI 96 (173)
T ss_dssp CSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHH
T ss_pred CHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHh
Confidence 3555686 467899999999999999999999999999986 89999999999998764
No 119
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=97.70 E-value=4.1e-05 Score=76.34 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=56.8
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhccc
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSKV 649 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~~ 649 (772)
+.+++++|+++ ++++++++++.++.+.|.+++.+.+||||++ |+++|+||++|++..+....
T Consensus 115 ~~~v~~im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~----g~lvGiIT~~Dil~~i~~e~ 176 (205)
T 3kxr_A 115 HEPLISLLSED-SRALTANTTLLDAAEAIEHSREIELPVIDDA----GELIGRVTLRAATALVREHY 176 (205)
T ss_dssp TSBGGGGCCSS-CCCEETTSCHHHHHHHHHTSSCSEEEEECTT----SBEEEEEEHHHHHHHHHHHH
T ss_pred cchHHHHhcCC-CeEECCCCCHHHHHHHHHhcCCCEEEEEcCC----CeEEEEEEHHHHHHHHHHHH
Confidence 46799999998 9999999999999999999999999999986 89999999999999886543
No 120
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=97.68 E-value=6e-05 Score=71.01 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=54.4
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcc
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~ 648 (772)
..+++++| ++ +.++++++++.++++.|.+++.+.+||+|++ |+++|+|+++|+++.+...
T Consensus 85 ~~~v~~~m-~~-~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~----g~~vGivt~~dil~~l~~~ 144 (153)
T 3oco_A 85 KAKISTIM-RD-IVSVPENMKVPDVMEEMSAHRVPMAIVIDEY----GGTSGIITDKDVYEELFGN 144 (153)
T ss_dssp TSBGGGTC-BC-CEEEETTSBHHHHHHHHHHTTCSCEEEECTT----SCEEEEECHHHHHHHHHC-
T ss_pred CCcHHHHh-CC-CeEECCCCCHHHHHHHHHHcCCcEEEEEeCC----CCEEEEeeHHHHHHHHhcc
Confidence 56899999 77 8999999999999999999999999999986 8999999999999987654
No 121
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=97.63 E-value=4.5e-05 Score=87.30 Aligned_cols=59 Identities=15% Similarity=0.332 Sum_probs=53.9
Q ss_pred ccccccccCCCceecCC-CCHHHHHHHHHHcCCCEEEEec-CCCeEEEEEeHhhhhhHhcC
Q 004131 699 IDLGPFLNPSPYVVPED-MSLSKVYNLFRQLGLRHIFVVP-RASRVIGLITRKDLLIEDGE 757 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~-~sL~~a~~lf~~~glr~lpVVd-~~g~lvGIITr~DLl~~~~~ 757 (772)
..++++|++++.+++++ +++.++.++|++.+.+++||+| ++|+++|+||++||++.+.+
T Consensus 384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~ 444 (527)
T 3pc3_A 384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVS 444 (527)
T ss_dssp SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHH
T ss_pred CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHh
Confidence 45777899999999999 9999999999999999999999 67999999999999987643
No 122
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=97.61 E-value=6.3e-05 Score=71.01 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=55.8
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcc
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~ 648 (772)
...+++|+|.++ +.++++++++.++++.|.+++++.+||+| + ++++|+|+++|+++.+...
T Consensus 76 ~~~~v~~~m~~~-~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~----g~~~Giit~~dil~~l~~~ 136 (157)
T 4fry_A 76 KATRVEEIMTAK-VRYVEPSQSTDECMALMTEHRMRHLPVLD-G----GKLIGLISIGDLVKSVIAD 136 (157)
T ss_dssp SSCBHHHHSBSS-CCCBCTTSBHHHHHHHHHHHTCSEEEEEE-T----TEEEEEEEHHHHHHHHHTT
T ss_pred cccCHHHHcCCC-CcEECCCCcHHHHHHHHHHcCCCEEEEEE-C----CEEEEEEEHHHHHHHHHHH
Confidence 357899999998 99999999999999999999999999999 4 8999999999999987654
No 123
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=97.40 E-value=0.00014 Score=76.32 Aligned_cols=54 Identities=13% Similarity=0.396 Sum_probs=49.9
Q ss_pred ccccccCCCceecCCCCHHHHHHHHHHc-----CCCEEEEecCCCeEEEEEeHhhhhhH
Q 004131 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQL-----GLRHIFVVPRASRVIGLITRKDLLIE 754 (772)
Q Consensus 701 l~~~m~~~p~~V~~~~sL~~a~~lf~~~-----glr~lpVVd~~g~lvGIITr~DLl~~ 754 (772)
++.+|+++++++++++++.++.+.|++. +.+++||+|++|+++|+||.+|+++.
T Consensus 139 v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~ 197 (286)
T 2oux_A 139 AGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN 197 (286)
T ss_dssp HHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS
T ss_pred HHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC
Confidence 4556999999999999999999999998 88899999988999999999999875
No 124
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=97.26 E-value=0.00073 Score=76.63 Aligned_cols=60 Identities=15% Similarity=0.325 Sum_probs=55.5
Q ss_pred ccchhhhccC-CceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhc
Q 004131 583 QMTAKEACGA-QKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (772)
Q Consensus 583 ~l~v~diM~~-~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~ 647 (772)
+.+++|+|++ + ++++++++++.++.+.|.+++.+.+||||++ ++++|+|+++|+++.+..
T Consensus 174 ~~~V~~vM~~~~-~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~----g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 174 SIKISDVMTKEQ-LITAPVGTTLSEAEKILQKYKIEKLPLVDNN----GVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp SSBHHHHCCCCC-CCCEETTCCHHHHHHHHHHHTCSEEEEECTT----SBEEEEEEHHHHHHHHHC
T ss_pred CCcHHHhcccCC-CEEECCCCCHHHHHHHHHHcCCCEEEEEeCC----CCEeeeccHHHHHHhhhc
Confidence 5689999998 7 9999999999999999999999999999987 899999999999987654
No 125
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=97.25 E-value=0.0002 Score=74.85 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=54.1
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhc
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQS 647 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~ 647 (772)
+.+++++|.++ ++++++++++.++.+.|.+++.+.+||||++ |+++|+||++|+++.+..
T Consensus 198 ~~~v~~im~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 198 RTRVAEIMNPK-VVYVRTDTDQEEVARLMADYDFTVLPVVDEE----GRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp TCBSTTTSBSS-CCCEETTSBHHHHHHHHHHHTCSEEEEECTT----SBEEEEEEHHHHHHHC--
T ss_pred CCcHHHHhCCC-CeEEeCCCCHHHHHHHHHhcCCCEEEEEeCC----CeEEEEEEHHHHHHHHHH
Confidence 56899999988 9999999999999999999999999999976 899999999999987654
No 126
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=97.09 E-value=0.00041 Score=78.12 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=56.4
Q ss_pred hccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHhcc
Q 004131 582 RQMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQSK 648 (772)
Q Consensus 582 ~~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~~~ 648 (772)
.+.+++|+|+++ ++++++++++.++.+.|++++.+.+||||++ ++++|+||++|+++.+...
T Consensus 217 ~~~~v~dim~~~-~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~----g~lvGiIT~~Dil~~i~~e 278 (473)
T 2zy9_A 217 PRTRVAEIMNPK-VVYVRTDTDQEEVARLMADYDFTVLPVVDEE----GRLVGIVTVDDVLDVLEAE 278 (473)
T ss_dssp TTSBGGGTSBSS-CCCEESSSBHHHHHHHHHHHTCSEEEEECTT----SBEEEEEEHHHHHHHHHHH
T ss_pred CCCcHHHHhCCC-CeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC----CEEEEEEehHhhHHHHHHH
Confidence 356899999988 9999999999999999999999999999986 8999999999999887543
No 127
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=96.99 E-value=0.00055 Score=77.37 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=47.6
Q ss_pred ccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 701 l~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
.++.|.++|+++++++++.++.++|++.+.+.+||+|++++++|+||++|+..
T Consensus 91 ~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~ 143 (496)
T 4fxs_A 91 FEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRF 143 (496)
T ss_dssp CCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTT
T ss_pred cccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhh
Confidence 34568899999999999999999999999999999998899999999999973
No 128
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=96.98 E-value=0.00021 Score=81.07 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=0.0
Q ss_pred hccchhhhccCC-ceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHHh
Q 004131 582 RQMTAKEACGAQ-KVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLLQ 646 (772)
Q Consensus 582 ~~l~v~diM~~~-~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L~ 646 (772)
.+.+++|+|+++ +++++++++++.++++.|.+++.+.+||||++ ++++|+|+++|+++.+.
T Consensus 159 ~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~----g~lvGiIT~~Dil~~~~ 220 (503)
T 1me8_A 159 TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD----QHLRYIVFRKDYDRSQV 220 (503)
T ss_dssp ------------------------------------------------------------------
T ss_pred ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC----CeEEEEEEecHHHHhhh
Confidence 356799999862 27899999999999999999999999999986 89999999999987654
No 129
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=96.63 E-value=0.0014 Score=74.23 Aligned_cols=55 Identities=15% Similarity=0.304 Sum_probs=50.7
Q ss_pred cccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEec--CCCeEEEEEeHhhhhhH
Q 004131 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVP--RASRVIGLITRKDLLIE 754 (772)
Q Consensus 700 dl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd--~~g~lvGIITr~DLl~~ 754 (772)
+++++|+++++++++++++.++.++|++.+.+++||+| ++++++|+||.+|+++.
T Consensus 91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~ 147 (491)
T 1zfj_A 91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI 147 (491)
T ss_dssp HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC
T ss_pred hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh
Confidence 45678999999999999999999999999999999999 78999999999999863
No 130
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=96.61 E-value=0.00034 Score=79.29 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=1.3
Q ss_pred ccccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 699 IDLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 699 idl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
.+.+++|.++++++++++++.++.++|++.+.+.+||+|++++++|+||++|+.+
T Consensus 95 ~~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~ 149 (494)
T 1vrd_A 95 KKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF 149 (494)
T ss_dssp HTC----------------------------------------------------
T ss_pred hhHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh
Confidence 3456679999999999999999999999999999999998899999999999975
No 131
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=96.28 E-value=0.00067 Score=75.51 Aligned_cols=57 Identities=28% Similarity=0.396 Sum_probs=0.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVL 644 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~ 644 (772)
+.+++|+|+++ ++++++..+++++.++|.+++...+||||++ ++|+|+||++|+.+.
T Consensus 199 ~~~V~evMT~~-lvt~~~~~~leeA~~iL~~~kieklpVVd~~----g~LvGlIT~kDi~k~ 255 (556)
T 4af0_A 199 ETPIKSVMTTE-VVTGSSPITLEKANSLLRETKKGKLPIVDSN----GHLVSLVARSDLLKN 255 (556)
T ss_dssp --------------------------------------------------------------
T ss_pred ceEhhhhcccc-eEEecCCCCHHHHHHHHHHccccceeEEccC----CcEEEEEEechhhhh
Confidence 46799999998 9999999999999999999999999999987 899999999999764
No 132
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=96.28 E-value=0.0014 Score=73.93 Aligned_cols=58 Identities=26% Similarity=0.450 Sum_probs=0.0
Q ss_pred ccchhhhccCCceEEecCcccHHHHHHHHhhCCCCeeEEEeCCCCCCcEEEEeeeHHHHHHHH
Q 004131 583 QMTAKEACGAQKVVSLPRIIKVADVVSILRTNKHNGFPVIDHSRNGERLVIGLVLRSHLLVLL 645 (772)
Q Consensus 583 ~l~v~diM~~~~vv~v~~~~tv~~~~~~L~~~~~~~fPVVd~~~~~~~~lvGiItr~dL~~~L 645 (772)
+.+++|+|+++ ++++++++++.++++.|.+++.+.+||||++ ++++|+|+++|+++..
T Consensus 149 ~~~v~~im~~~-~~~v~~~~~l~eal~~m~~~~~~~lpVVde~----g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 149 GKLVKELMTKE-VITVPESIEVEEALKIMIENRIDRLPVVDER----GKLVGLITMSDLVARK 206 (486)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCCHHHHccCC-CeEECCcCcHHHHHHHHHHcCCCEEEEEecC----CeEEEEEEHHHHHHhh
Confidence 56799999988 9999999999999999999999999999986 8999999999998753
No 133
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=96.09 E-value=0.0011 Score=75.47 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=27.6
Q ss_pred cccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecC---CCeEEEEEeHhhhhhH
Q 004131 700 DLGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPR---ASRVIGLITRKDLLIE 754 (772)
Q Consensus 700 dl~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~---~g~lvGIITr~DLl~~ 754 (772)
.++++|.++|.++++++++.++.++|++.+.+.+||+|+ +++++|+||++|+.+.
T Consensus 109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~ 166 (514)
T 1jcn_A 109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFL 166 (514)
T ss_dssp TCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC--
T ss_pred hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhh
Confidence 345568889999999999999999999999999999998 5899999999999764
No 134
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=96.00 E-value=0.0012 Score=74.54 Aligned_cols=52 Identities=19% Similarity=0.377 Sum_probs=1.6
Q ss_pred ccccccCCCceecCCCCHHHHHHHHHHcCCCEEEEecCCCeEEEEEeHhhhhh
Q 004131 701 LGPFLNPSPYVVPEDMSLSKVYNLFRQLGLRHIFVVPRASRVIGLITRKDLLI 753 (772)
Q Consensus 701 l~~~m~~~p~~V~~~~sL~~a~~lf~~~glr~lpVVd~~g~lvGIITr~DLl~ 753 (772)
.++.|.++|.++++++++.++.++|++.+.+.+||+| +++++|+||.+|+..
T Consensus 90 ~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~ 141 (490)
T 4avf_A 90 HETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRV 141 (490)
T ss_dssp CCC--------------------------------------------------
T ss_pred cccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhh
Confidence 4556889999999999999999999999999999999 699999999999963
No 135
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=27.24 E-value=29 Score=23.58 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=18.9
Q ss_pred hhhhHHHhhhhhhhhhhhcCCccce
Q 004131 228 DRRDLVTCGCAAGVAAAFRAPVGGV 252 (772)
Q Consensus 228 ~~r~li~~GaaAgvaaaF~APigGv 252 (772)
.||+|+...++++.+++.+.++.+.
T Consensus 4 sRR~FLK~~aaa~Aaaaag~~~~~~ 28 (35)
T 2pq4_B 4 SRRSFMKANAVAAAAAAAGLSVPGV 28 (35)
T ss_dssp CSHHHHHHHHHHHHHHHHCCCCSSS
T ss_pred cHHHHHHHHHHHHHHHHhcccchhH
Confidence 4899998888877777777776643
No 136
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=26.49 E-value=2.3e+02 Score=23.03 Aligned_cols=42 Identities=19% Similarity=0.082 Sum_probs=24.6
Q ss_pred HHHHHHHhc--CcccchhhhHHHHHHHHHHHHH-HHHHHHHHHHH
Q 004131 55 AYREEQAQR--GKLYVGYSVVVKWFFALLIGIG-TGLAAVFINIS 96 (772)
Q Consensus 55 ~~~~~~~~~--~~~~~~~~~~~~w~~~~liGv~-~Gl~a~~~~~~ 96 (772)
-|.++|++- ..+..-+..+.+-..+..+|++ +|++|+++...
T Consensus 27 ~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIkLI 71 (80)
T 2ww9_B 27 EFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLI 71 (80)
T ss_dssp HHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566431 1223334556667777777874 58888887654
No 137
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=21.73 E-value=2.4e+02 Score=22.46 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 004131 70 YSVVVKWFFALLIGIG-TGLAAVFINISVENF 100 (772)
Q Consensus 70 ~~~~~~w~~~~liGv~-~Gl~a~~~~~~i~~~ 100 (772)
+.++.+-..+..+|++ +|++++++......+
T Consensus 31 r~EF~~iak~~~iG~~imG~IGfiIkli~ipI 62 (74)
T 1rh5_B 31 KDEYLAVAKVTALGISLLGIIGYIIHVPATYI 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777764 588888887654433
Done!