Query 004132
Match_columns 772
No_of_seqs 379 out of 1536
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 18:07:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1061 Vesicle coat complex A 100.0 3E-124 5E-129 1044.0 49.1 691 1-770 41-734 (734)
2 PTZ00429 beta-adaptin; Provisi 100.0 2E-114 4E-119 1007.6 61.2 608 1-615 60-678 (746)
3 KOG1060 Vesicle coat complex A 100.0 2.3E-89 5.1E-94 754.0 50.9 731 1-762 63-891 (968)
4 KOG1062 Vesicle coat complex A 100.0 2.9E-80 6.3E-85 686.9 49.8 493 3-509 64-598 (866)
5 KOG1077 Vesicle coat complex A 100.0 2.3E-74 5E-79 627.9 51.2 716 3-769 68-844 (938)
6 PF01602 Adaptin_N: Adaptin N 100.0 9.8E-75 2.1E-79 671.9 39.7 482 1-491 34-524 (526)
7 COG5096 Vesicle coat complex, 100.0 9.5E-68 2.1E-72 602.2 38.3 539 1-544 47-625 (757)
8 KOG1059 Vesicle coat complex A 100.0 3.2E-53 7E-58 464.8 36.2 478 3-490 66-576 (877)
9 KOG1058 Vesicle coat complex C 100.0 7.6E-41 1.7E-45 368.6 28.4 400 1-419 48-467 (948)
10 KOG1078 Vesicle coat complex C 100.0 1.4E-36 3.1E-41 337.8 33.0 466 5-490 60-531 (865)
11 COG5240 SEC21 Vesicle coat com 100.0 3E-34 6.5E-39 308.1 32.2 468 6-490 62-554 (898)
12 PF01602 Adaptin_N: Adaptin N 99.4 1.2E-11 2.7E-16 143.8 25.5 409 16-441 86-514 (526)
13 PRK13800 putative oxidoreducta 99.3 2.1E-10 4.5E-15 141.1 25.5 271 48-372 623-894 (897)
14 PRK09687 putative lyase; Provi 99.3 3.5E-10 7.5E-15 120.3 19.8 251 47-372 24-277 (280)
15 PRK13800 putative oxidoreducta 99.2 2.5E-09 5.3E-14 131.6 29.0 257 59-374 607-864 (897)
16 PTZ00429 beta-adaptin; Provisi 99.2 2.7E-08 5.9E-13 117.9 34.0 403 54-481 76-497 (746)
17 PRK09687 putative lyase; Provi 99.2 7.3E-09 1.6E-13 110.2 24.7 189 14-224 28-218 (280)
18 PLN03200 cellulose synthase-in 99.1 1.9E-07 4.2E-12 118.8 39.4 293 200-500 406-732 (2102)
19 PF12717 Cnd1: non-SMC mitotic 99.1 2.7E-09 5.9E-14 106.1 15.8 147 59-210 1-158 (178)
20 PLN03200 cellulose synthase-in 99.0 9.3E-08 2E-12 121.6 29.1 396 55-454 413-863 (2102)
21 PF14796 AP3B1_C: Clathrin-ada 99.0 3.8E-09 8.3E-14 99.3 12.1 88 630-718 51-145 (145)
22 KOG2023 Nuclear transport rece 98.9 1.1E-07 2.5E-12 106.2 20.7 407 64-494 376-821 (885)
23 KOG2171 Karyopherin (importin) 98.9 1.4E-05 3.1E-10 95.4 37.6 424 51-483 9-496 (1075)
24 KOG1058 Vesicle coat complex C 98.9 5.4E-07 1.2E-11 102.2 24.3 365 25-432 41-443 (948)
25 KOG2023 Nuclear transport rece 98.8 1.1E-06 2.4E-11 98.6 25.7 400 13-454 17-508 (885)
26 KOG2171 Karyopherin (importin) 98.8 2.8E-05 6.1E-10 93.0 38.8 516 8-541 3-604 (1075)
27 PF10508 Proteasom_PSMB: Prote 98.8 5.5E-05 1.2E-09 87.5 38.6 259 51-313 43-327 (503)
28 KOG0166 Karyopherin (importin) 98.7 8.7E-06 1.9E-10 91.3 28.8 301 9-341 66-394 (514)
29 KOG1059 Vesicle coat complex A 98.7 2.4E-05 5.3E-10 88.8 31.5 340 5-360 104-462 (877)
30 KOG0212 Uncharacterized conser 98.7 0.00021 4.5E-09 79.6 37.5 359 14-377 5-406 (675)
31 PF10508 Proteasom_PSMB: Prote 98.6 2.5E-06 5.5E-11 98.5 22.5 309 11-322 79-440 (503)
32 KOG1060 Vesicle coat complex A 98.5 6.8E-05 1.5E-09 86.1 28.7 383 52-455 41-462 (968)
33 KOG0213 Splicing factor 3b, su 98.5 9.8E-05 2.1E-09 84.0 28.5 103 47-149 477-582 (1172)
34 KOG0166 Karyopherin (importin) 98.4 8E-05 1.7E-09 83.7 26.0 259 9-269 109-393 (514)
35 PF14764 SPG48: AP-5 complex s 98.4 0.00016 3.6E-09 80.2 28.0 128 370-500 290-454 (459)
36 KOG1020 Sister chromatid cohes 98.4 0.00062 1.3E-08 83.3 34.6 160 22-186 793-956 (1692)
37 smart00809 Alpha_adaptinC2 Ada 98.3 2.5E-06 5.5E-11 76.9 8.4 75 642-716 2-76 (104)
38 PF13646 HEAT_2: HEAT repeats; 98.2 4.9E-06 1.1E-10 72.2 8.2 84 49-144 2-87 (88)
39 KOG1062 Vesicle coat complex A 98.2 0.00066 1.4E-08 78.6 26.9 176 87-273 76-267 (866)
40 COG5240 SEC21 Vesicle coat com 98.1 0.0002 4.4E-09 79.6 19.3 337 58-410 202-550 (898)
41 KOG4224 Armadillo repeat prote 98.1 0.00017 3.6E-09 76.3 17.5 330 14-375 90-444 (550)
42 PF05918 API5: Apoptosis inhib 98.1 0.0042 9.1E-08 71.3 29.8 191 10-205 24-226 (556)
43 KOG2259 Uncharacterized conser 98.0 0.0017 3.7E-08 73.7 24.5 405 43-486 118-546 (823)
44 COG5181 HSH155 U2 snRNP splice 98.0 0.001 2.2E-08 74.7 21.9 435 48-491 283-870 (975)
45 KOG1077 Vesicle coat complex A 98.0 0.032 6.9E-07 64.2 33.6 436 27-488 61-565 (938)
46 KOG2259 Uncharacterized conser 98.0 0.00081 1.8E-08 76.2 21.0 345 39-393 151-527 (823)
47 COG1413 FOG: HEAT repeat [Ener 97.9 0.002 4.4E-08 70.6 24.0 217 46-328 43-261 (335)
48 TIGR02270 conserved hypothetic 97.9 0.00051 1.1E-08 76.9 19.3 211 47-306 87-297 (410)
49 PF05804 KAP: Kinesin-associat 97.9 0.00091 2E-08 79.2 22.2 345 56-414 260-651 (708)
50 COG1413 FOG: HEAT repeat [Ener 97.9 0.0029 6.2E-08 69.4 24.6 110 10-136 44-153 (335)
51 PF02883 Alpha_adaptinC2: Adap 97.8 2.9E-05 6.4E-10 71.3 6.3 91 641-735 5-101 (115)
52 KOG1824 TATA-binding protein-i 97.8 0.013 2.9E-07 69.1 28.2 330 11-358 773-1151(1233)
53 KOG1824 TATA-binding protein-i 97.8 0.0018 3.9E-08 76.1 21.0 285 22-338 832-1184(1233)
54 KOG0414 Chromosome condensatio 97.8 0.083 1.8E-06 64.2 34.4 148 5-152 266-431 (1251)
55 KOG1078 Vesicle coat complex C 97.8 0.0058 1.3E-07 70.9 24.0 267 121-403 246-520 (865)
56 PF04826 Arm_2: Armadillo-like 97.7 0.0028 6.1E-08 66.4 19.0 226 85-331 16-253 (254)
57 TIGR02270 conserved hypothetic 97.7 0.011 2.4E-07 66.3 24.8 261 53-375 32-294 (410)
58 PF05804 KAP: Kinesin-associat 97.7 0.0094 2E-07 70.8 25.2 368 123-499 253-658 (708)
59 KOG1241 Karyopherin (importin) 97.6 0.14 3E-06 59.7 32.0 413 10-455 260-715 (859)
60 PF12717 Cnd1: non-SMC mitotic 97.6 0.0013 2.9E-08 65.4 14.4 93 94-191 1-93 (178)
61 KOG1242 Protein containing ada 97.6 0.15 3.2E-06 58.4 31.5 286 44-342 94-403 (569)
62 COG5096 Vesicle coat complex, 97.6 0.014 3E-07 69.1 23.7 137 47-191 56-196 (757)
63 KOG0213 Splicing factor 3b, su 97.5 0.13 2.7E-06 59.7 30.1 382 56-451 451-870 (1172)
64 KOG0414 Chromosome condensatio 97.5 0.00045 9.8E-09 82.8 11.1 158 8-168 918-1082(1251)
65 KOG0212 Uncharacterized conser 97.5 0.11 2.4E-06 58.5 28.2 401 42-495 18-450 (675)
66 cd00020 ARM Armadillo/beta-cat 97.5 0.00028 6.2E-09 64.2 7.0 106 82-187 8-117 (120)
67 PF13646 HEAT_2: HEAT repeats; 97.5 0.00059 1.3E-08 58.9 8.6 84 84-185 2-87 (88)
68 KOG1061 Vesicle coat complex A 97.4 0.014 3E-07 68.1 21.4 170 50-227 17-189 (734)
69 COG5215 KAP95 Karyopherin (imp 97.4 0.05 1.1E-06 61.2 24.2 373 53-454 270-714 (858)
70 cd00020 ARM Armadillo/beta-cat 97.4 0.00035 7.5E-09 63.6 6.6 102 47-148 8-119 (120)
71 KOG1242 Protein containing ada 97.3 0.04 8.6E-07 62.9 22.5 261 7-271 171-446 (569)
72 PF12348 CLASP_N: CLASP N term 97.2 0.004 8.7E-08 64.2 13.0 184 88-274 14-211 (228)
73 KOG0915 Uncharacterized conser 97.2 0.12 2.6E-06 64.3 26.6 437 12-494 821-1348(1702)
74 COG5181 HSH155 U2 snRNP splice 97.2 0.44 9.6E-06 54.4 28.9 438 4-489 436-910 (975)
75 COG5064 SRP1 Karyopherin (impo 97.2 0.013 2.7E-07 62.0 15.7 227 47-275 158-407 (526)
76 cd00256 VATPase_H VATPase_H, r 97.2 0.41 8.9E-06 53.9 28.5 337 60-452 52-426 (429)
77 COG5064 SRP1 Karyopherin (impo 97.1 0.071 1.5E-06 56.6 20.3 181 194-377 239-443 (526)
78 KOG0211 Protein phosphatase 2A 97.1 0.14 3E-06 61.4 25.3 412 73-490 229-663 (759)
79 KOG1241 Karyopherin (importin) 97.1 0.98 2.1E-05 53.0 38.8 393 50-465 60-543 (859)
80 KOG1020 Sister chromatid cohes 97.0 1.7 3.6E-05 54.8 38.5 465 12-490 819-1404(1692)
81 KOG1240 Protein kinase contain 97.0 0.061 1.3E-06 65.3 21.2 255 9-271 421-727 (1431)
82 PF04826 Arm_2: Armadillo-like 96.9 0.025 5.4E-07 59.4 15.0 168 57-227 24-205 (254)
83 PF12755 Vac14_Fab1_bd: Vacuol 96.8 0.0047 1E-07 54.8 7.7 67 75-141 21-89 (97)
84 KOG1240 Protein kinase contain 96.7 0.018 3.9E-07 69.7 13.7 205 8-226 506-724 (1431)
85 KOG1943 Beta-tubulin folding c 96.7 2.2 4.9E-05 52.0 30.5 75 75-150 335-410 (1133)
86 COG5098 Chromosome condensatio 96.7 0.015 3.3E-07 66.4 12.1 132 21-152 274-418 (1128)
87 PF13513 HEAT_EZ: HEAT-like re 96.7 0.0046 1E-07 48.6 5.8 49 60-108 1-55 (55)
88 COG5215 KAP95 Karyopherin (imp 96.6 2 4.3E-05 49.0 28.9 108 10-117 322-444 (858)
89 COG5098 Chromosome condensatio 96.5 0.02 4.3E-07 65.5 11.9 173 10-189 892-1075(1128)
90 PF02985 HEAT: HEAT repeat; I 96.5 0.0046 1E-07 42.6 4.1 30 82-111 1-30 (31)
91 KOG0946 ER-Golgi vesicle-tethe 96.4 1.7 3.6E-05 51.3 26.1 132 18-151 32-197 (970)
92 KOG4224 Armadillo repeat prote 96.3 2.1 4.6E-05 46.2 24.1 208 10-218 168-396 (550)
93 PF13513 HEAT_EZ: HEAT-like re 96.3 0.0033 7.2E-08 49.4 2.7 53 95-147 1-55 (55)
94 PF12348 CLASP_N: CLASP N term 96.2 0.099 2.1E-06 53.8 14.5 60 321-380 63-126 (228)
95 KOG0168 Putative ubiquitin fus 96.2 0.73 1.6E-05 54.6 22.2 189 49-239 170-377 (1051)
96 KOG0211 Protein phosphatase 2A 96.2 2.6 5.7E-05 50.8 27.6 322 31-362 221-568 (759)
97 KOG2274 Predicted importin 9 [ 96.0 2 4.4E-05 51.4 24.4 235 62-305 426-689 (1005)
98 PF05918 API5: Apoptosis inhib 95.9 2.8 6.1E-05 48.6 25.3 119 59-186 35-158 (556)
99 KOG1820 Microtubule-associated 95.9 0.11 2.4E-06 62.6 14.6 195 76-272 248-446 (815)
100 PF12460 MMS19_C: RNAPII trans 95.9 2.5 5.4E-05 47.9 25.0 322 165-489 3-392 (415)
101 PF12719 Cnd3: Nuclear condens 95.8 0.53 1.2E-05 50.8 18.1 154 310-487 25-181 (298)
102 KOG4413 26S proteasome regulat 95.8 3.4 7.3E-05 44.1 23.9 231 75-343 76-336 (524)
103 KOG1248 Uncharacterized conser 95.8 1.1 2.4E-05 55.0 21.8 220 4-225 606-854 (1176)
104 KOG0915 Uncharacterized conser 95.8 1.5 3.3E-05 55.1 23.2 319 49-416 1001-1348(1702)
105 KOG0413 Uncharacterized conser 95.7 0.56 1.2E-05 56.0 18.2 402 61-487 592-1069(1529)
106 PF12460 MMS19_C: RNAPII trans 95.6 0.35 7.6E-06 54.8 16.5 41 240-280 364-405 (415)
107 KOG1517 Guanine nucleotide bin 95.6 0.26 5.5E-06 59.4 15.3 136 10-150 513-672 (1387)
108 KOG1525 Sister chromatid cohes 95.5 9.6 0.00021 48.6 29.1 200 290-491 236-472 (1266)
109 PF14500 MMS19_N: Dos2-interac 95.4 2.7 5.8E-05 44.5 21.0 173 184-358 66-256 (262)
110 KOG1822 Uncharacterized conser 95.2 2.1 4.5E-05 55.1 22.1 226 43-273 873-1131(2067)
111 PF12830 Nipped-B_C: Sister ch 95.1 0.19 4.1E-06 50.4 11.0 149 49-202 11-182 (187)
112 COG5218 YCG1 Chromosome conden 95.0 8.9 0.00019 44.1 27.8 297 1-316 1-343 (885)
113 PF10363 DUF2435: Protein of u 94.7 0.084 1.8E-06 46.4 6.1 67 49-115 6-77 (92)
114 COG5218 YCG1 Chromosome conden 94.7 2 4.3E-05 49.1 18.0 149 121-276 47-206 (885)
115 KOG1943 Beta-tubulin folding c 94.6 16 0.00034 45.0 27.7 427 4-467 332-807 (1133)
116 KOG2213 Apoptosis inhibitor 5/ 94.6 8.9 0.00019 42.1 27.7 79 12-91 28-106 (460)
117 KOG4413 26S proteasome regulat 94.5 8.3 0.00018 41.3 22.4 308 18-330 91-467 (524)
118 PF10363 DUF2435: Protein of u 94.4 0.26 5.7E-06 43.3 8.7 82 84-172 6-88 (92)
119 KOG0567 HEAT repeat-containing 94.4 4.5 9.8E-05 42.2 18.5 38 287-328 231-268 (289)
120 smart00638 LPD_N Lipoprotein N 94.4 0.22 4.7E-06 59.0 10.7 93 49-147 449-543 (574)
121 KOG2025 Chromosome condensatio 94.3 15 0.00031 43.4 29.3 116 35-150 33-156 (892)
122 KOG0567 HEAT repeat-containing 94.2 0.24 5.1E-06 51.3 9.0 87 47-145 188-276 (289)
123 PF12719 Cnd3: Nuclear condens 94.0 2 4.3E-05 46.4 16.3 68 83-152 29-96 (298)
124 KOG1248 Uncharacterized conser 93.9 23 0.00049 44.2 31.9 206 174-381 629-860 (1176)
125 PF12755 Vac14_Fab1_bd: Vacuol 93.5 0.17 3.7E-06 44.9 5.8 78 97-174 2-81 (97)
126 PF08167 RIX1: rRNA processing 93.1 0.82 1.8E-05 44.8 10.5 124 120-279 25-153 (165)
127 PF14664 RICTOR_N: Rapamycin-i 93.0 12 0.00025 41.8 20.5 205 248-453 33-271 (371)
128 KOG1949 Uncharacterized conser 92.9 1.4 3E-05 51.3 13.1 175 44-224 172-367 (1005)
129 COG5656 SXM1 Importin, protein 92.6 28 0.0006 41.5 31.4 112 58-169 428-550 (970)
130 KOG2025 Chromosome condensatio 92.5 1.2 2.7E-05 51.8 12.1 136 7-146 83-256 (892)
131 smart00638 LPD_N Lipoprotein N 92.5 4 8.7E-05 48.3 17.3 192 290-494 340-546 (574)
132 PF05004 IFRD: Interferon-rela 91.9 19 0.00042 39.0 20.2 188 84-272 46-260 (309)
133 KOG0946 ER-Golgi vesicle-tethe 91.4 8.1 0.00018 45.9 17.0 144 238-395 58-218 (970)
134 PF08713 DNA_alkylation: DNA a 91.3 0.36 7.8E-06 49.1 5.8 131 13-152 55-187 (213)
135 PF05536 Neurochondrin: Neuroc 91.2 37 0.0008 39.9 24.0 178 93-271 68-263 (543)
136 PF02985 HEAT: HEAT repeat; I 90.9 0.44 9.6E-06 32.6 4.1 29 121-149 1-29 (31)
137 KOG1949 Uncharacterized conser 90.7 2.4 5.1E-05 49.5 11.8 199 22-225 101-329 (1005)
138 KOG2062 26S proteasome regulat 90.6 4.6 0.0001 47.5 14.1 131 7-151 482-620 (929)
139 KOG2956 CLIP-associating prote 90.6 11 0.00025 42.2 16.6 181 92-279 298-488 (516)
140 PF11698 V-ATPase_H_C: V-ATPas 90.5 0.67 1.5E-05 42.6 6.0 67 385-451 43-115 (119)
141 PF01347 Vitellogenin_N: Lipop 90.2 4.4 9.5E-05 48.4 14.6 193 289-494 377-590 (618)
142 PF01347 Vitellogenin_N: Lipop 90.1 0.76 1.7E-05 54.8 7.9 94 45-147 489-587 (618)
143 PLN03076 ARF guanine nucleotid 89.9 41 0.0009 44.8 23.4 127 22-149 1110-1253(1780)
144 KOG2160 Armadillo/beta-catenin 89.7 2.6 5.7E-05 45.7 10.6 98 52-150 130-241 (342)
145 KOG2062 26S proteasome regulat 89.3 0.97 2.1E-05 52.8 7.4 156 14-180 524-689 (929)
146 KOG2160 Armadillo/beta-catenin 89.3 2.2 4.8E-05 46.2 9.7 106 84-190 127-240 (342)
147 KOG1992 Nuclear export recepto 88.6 34 0.00073 41.2 19.1 244 42-328 452-716 (960)
148 KOG1991 Nuclear transport rece 88.4 72 0.0016 39.3 27.0 115 57-173 429-559 (1010)
149 KOG0413 Uncharacterized conser 87.9 2.8 6.1E-05 50.4 10.0 129 25-156 947-1080(1529)
150 KOG1525 Sister chromatid cohes 87.8 95 0.0021 40.0 24.5 142 333-481 207-356 (1266)
151 KOG4653 Uncharacterized conser 87.8 38 0.00083 41.0 19.0 77 78-154 724-802 (982)
152 PF14664 RICTOR_N: Rapamycin-i 87.4 13 0.00027 41.5 14.6 138 11-150 27-177 (371)
153 KOG0168 Putative ubiquitin fus 87.3 15 0.00032 44.2 15.3 178 201-382 170-372 (1051)
154 KOG2759 Vacuolar H+-ATPase V1 87.3 55 0.0012 36.6 27.5 355 57-451 61-438 (442)
155 cd06561 AlkD_like A new struct 87.2 6.8 0.00015 39.1 11.5 107 41-152 53-173 (197)
156 KOG2956 CLIP-associating prote 87.2 26 0.00056 39.6 16.3 164 287-454 298-480 (516)
157 PF13251 DUF4042: Domain of un 86.2 11 0.00025 37.4 12.0 155 97-272 2-177 (182)
158 PF11864 DUF3384: Domain of un 85.6 75 0.0016 36.6 34.3 194 291-486 230-461 (464)
159 PF12830 Nipped-B_C: Sister ch 85.4 7 0.00015 39.1 10.3 134 309-454 6-143 (187)
160 PF02854 MIF4G: MIF4G domain; 84.8 27 0.00058 34.6 14.5 61 295-355 2-62 (209)
161 PF12765 Cohesin_HEAT: HEAT re 84.5 1.2 2.7E-05 32.9 3.3 40 104-143 2-41 (42)
162 COG5116 RPN2 26S proteasome re 84.3 12 0.00027 42.9 12.2 118 21-151 494-617 (926)
163 KOG2933 Uncharacterized conser 84.0 7 0.00015 41.7 9.7 120 27-150 71-200 (334)
164 KOG2274 Predicted importin 9 [ 84.0 1.1E+02 0.0025 37.3 30.1 151 208-394 501-668 (1005)
165 PF08389 Xpo1: Exportin 1-like 83.7 6.3 0.00014 37.1 8.8 51 95-148 2-53 (148)
166 PF14631 FancD2: Fanconi anaem 83.4 1.6E+02 0.0036 38.7 26.5 96 120-224 192-288 (1426)
167 PF01603 B56: Protein phosphat 82.4 65 0.0014 36.4 17.7 137 349-486 175-321 (409)
168 PF08713 DNA_alkylation: DNA a 82.4 1.6 3.5E-05 44.3 4.4 70 49-118 123-192 (213)
169 KOG4500 Rho/Rac GTPase guanine 82.3 92 0.002 35.0 22.1 260 13-273 227-523 (604)
170 PF12530 DUF3730: Protein of u 81.9 57 0.0012 33.8 15.7 20 171-190 132-151 (234)
171 KOG2032 Uncharacterized conser 81.5 1E+02 0.0023 35.2 18.0 132 21-153 228-375 (533)
172 PF11935 DUF3453: Domain of un 80.6 18 0.00039 37.7 11.5 127 89-225 1-143 (239)
173 KOG1820 Microtubule-associated 80.2 33 0.00071 42.1 14.8 174 47-226 254-442 (815)
174 PF12074 DUF3554: Domain of un 79.9 27 0.00059 38.3 13.3 81 28-110 6-90 (339)
175 PF13001 Ecm29: Proteasome sta 79.8 19 0.00042 41.9 12.5 127 20-149 296-443 (501)
176 PF14676 FANCI_S2: FANCI solen 79.6 18 0.0004 35.1 10.3 112 369-483 39-153 (158)
177 PF01603 B56: Protein phosphat 79.6 95 0.0021 35.1 17.7 90 61-150 109-205 (409)
178 PF03378 CAS_CSE1: CAS/CSE pro 79.4 1.1E+02 0.0025 34.8 18.2 156 159-327 24-194 (435)
179 cd03561 VHS VHS domain family; 79.4 25 0.00054 33.0 11.1 88 26-113 17-115 (133)
180 KOG2213 Apoptosis inhibitor 5/ 78.6 1.1E+02 0.0025 33.8 17.3 58 264-321 48-106 (460)
181 KOG1293 Proteins containing ar 78.2 1.5E+02 0.0033 35.0 23.0 138 310-455 418-565 (678)
182 PF08167 RIX1: rRNA processing 77.9 11 0.00024 36.8 8.4 76 75-150 19-98 (165)
183 PF11865 DUF3385: Domain of un 77.7 11 0.00025 36.6 8.4 33 39-74 7-39 (160)
184 KOG2005 26S proteasome regulat 77.3 10 0.00023 44.2 8.9 117 59-189 621-742 (878)
185 PF11698 V-ATPase_H_C: V-ATPas 76.6 7 0.00015 36.0 6.1 63 86-148 48-114 (119)
186 PF10633 NPCBM_assoc: NPCBM-as 76.6 3.2 7E-05 35.0 3.7 58 657-715 4-62 (78)
187 KOG2933 Uncharacterized conser 76.3 15 0.00033 39.2 9.2 142 82-226 89-233 (334)
188 KOG1048 Neural adherens juncti 75.5 1.5E+02 0.0032 35.8 17.8 329 84-414 236-640 (717)
189 PF03224 V-ATPase_H_N: V-ATPas 75.2 42 0.0009 36.4 12.9 142 121-268 60-226 (312)
190 PF00790 VHS: VHS domain; Int 74.9 22 0.00048 33.6 9.4 96 16-111 12-119 (140)
191 PF05004 IFRD: Interferon-rela 74.6 1.3E+02 0.0029 32.6 17.7 107 381-489 125-255 (309)
192 KOG2032 Uncharacterized conser 74.1 1.7E+02 0.0037 33.5 20.2 145 79-223 256-412 (533)
193 COG5116 RPN2 26S proteasome re 73.7 18 0.00039 41.6 9.4 93 52-152 490-584 (926)
194 PF08506 Cse1: Cse1; InterPro 73.3 5 0.00011 44.7 5.2 62 44-105 303-370 (370)
195 KOG2038 CAATT-binding transcri 72.9 2.2E+02 0.0048 34.4 19.1 71 80-152 303-373 (988)
196 smart00288 VHS Domain present 72.8 44 0.00094 31.4 10.7 90 22-111 13-112 (133)
197 cd06561 AlkD_like A new struct 72.5 7.9 0.00017 38.6 6.1 67 52-118 111-178 (197)
198 PF00514 Arm: Armadillo/beta-c 72.5 7 0.00015 28.4 4.2 28 82-109 13-40 (41)
199 KOG2081 Nuclear transport regu 71.7 2E+02 0.0044 33.4 25.1 100 326-427 367-469 (559)
200 cd03569 VHS_Hrs_Vps27p VHS dom 71.7 46 0.00099 31.7 10.6 82 29-110 24-114 (142)
201 PF14631 FancD2: Fanconi anaem 71.2 3.5E+02 0.0075 35.9 27.6 125 199-330 436-573 (1426)
202 PF11864 DUF3384: Domain of un 70.9 2E+02 0.0044 33.1 28.1 54 61-114 5-62 (464)
203 KOG1243 Protein kinase [Genera 70.7 20 0.00044 42.3 9.3 175 47-226 331-514 (690)
204 PF08506 Cse1: Cse1; InterPro 70.5 33 0.00072 38.2 10.8 135 86-221 215-369 (370)
205 cd03568 VHS_STAM VHS domain fa 70.3 33 0.0007 32.8 9.3 81 30-110 21-110 (144)
206 PF11838 ERAP1_C: ERAP1-like C 69.6 1.3E+02 0.0028 32.2 15.3 222 161-392 19-262 (324)
207 PF00514 Arm: Armadillo/beta-c 69.6 6.1 0.00013 28.7 3.3 31 118-148 10-40 (41)
208 KOG4653 Uncharacterized conser 68.7 1.6E+02 0.0035 36.0 16.0 174 312-491 728-918 (982)
209 PF12765 Cohesin_HEAT: HEAT re 68.6 5.9 0.00013 29.3 3.0 24 81-104 18-41 (42)
210 PF08623 TIP120: TATA-binding 68.6 12 0.00026 36.7 6.0 60 92-152 38-97 (169)
211 PF10274 ParcG: Parkin co-regu 68.5 39 0.00085 33.6 9.6 89 81-171 38-130 (183)
212 PF12074 DUF3554: Domain of un 68.4 1.9E+02 0.004 31.7 18.7 109 61-171 2-113 (339)
213 KOG1991 Nuclear transport rece 68.1 3.1E+02 0.0068 34.1 33.1 176 88-270 11-212 (1010)
214 PF10165 Ric8: Guanine nucleot 67.3 93 0.002 35.7 13.9 63 208-272 42-111 (446)
215 cd03568 VHS_STAM VHS domain fa 67.3 1E+02 0.0022 29.4 12.0 85 249-361 46-132 (144)
216 KOG1967 DNA repair/transcripti 66.6 38 0.00083 41.3 10.5 192 101-299 799-1018(1030)
217 PF03224 V-ATPase_H_N: V-ATPas 66.4 52 0.0011 35.6 11.2 157 59-225 53-225 (312)
218 PF10521 DUF2454: Protein of u 66.3 1.2E+02 0.0025 32.5 13.6 74 75-148 113-202 (282)
219 KOG2973 Uncharacterized conser 64.8 34 0.00075 36.6 8.8 60 49-110 6-71 (353)
220 KOG0889 Histone acetyltransfer 63.9 6.4E+02 0.014 36.2 22.6 66 46-111 927-1014(3550)
221 smart00567 EZ_HEAT E-Z type HE 63.9 8.2 0.00018 25.9 2.8 28 61-92 2-29 (30)
222 KOG1243 Protein kinase [Genera 60.7 3.1E+02 0.0067 32.9 16.2 142 7-149 249-398 (690)
223 PF09759 Atx10homo_assoc: Spin 60.1 45 0.00097 29.9 7.5 62 439-502 3-70 (102)
224 PF08631 SPO22: Meiosis protei 59.9 2.4E+02 0.0051 29.9 17.9 108 254-362 80-193 (278)
225 PLN03076 ARF guanine nucleotid 59.8 5.1E+02 0.011 35.2 19.8 134 208-341 1147-1300(1780)
226 KOG1517 Guanine nucleotide bin 59.7 34 0.00074 42.2 8.5 97 15-111 605-733 (1387)
227 cd07064 AlkD_like_1 A new stru 58.5 95 0.002 31.6 10.7 66 84-153 118-183 (208)
228 cd03567 VHS_GGA VHS domain fam 57.9 1.7E+02 0.0037 27.7 12.0 73 249-344 47-120 (139)
229 KOG2038 CAATT-binding transcri 57.7 4.2E+02 0.0092 32.2 16.8 125 20-149 281-409 (988)
230 PF08569 Mo25: Mo25-like; Int 57.5 3E+02 0.0064 30.3 17.0 182 307-493 121-335 (335)
231 PF07539 DRIM: Down-regulated 57.0 51 0.0011 31.4 7.9 49 79-132 15-63 (141)
232 KOG2137 Protein kinase [Signal 56.5 2.3E+02 0.005 34.0 14.4 205 251-455 284-500 (700)
233 PF12530 DUF3730: Protein of u 55.4 2.6E+02 0.0056 28.9 18.2 131 19-151 11-153 (234)
234 COG5110 RPN1 26S proteasome re 55.4 80 0.0017 36.4 10.0 87 59-149 617-705 (881)
235 KOG1222 Kinesin associated pro 55.4 3.7E+02 0.0081 30.8 26.1 286 81-378 304-622 (791)
236 PF10274 ParcG: Parkin co-regu 55.2 43 0.00093 33.3 7.2 51 77-129 76-126 (183)
237 PF07705 CARDB: CARDB; InterP 54.9 13 0.00028 32.3 3.3 55 657-714 18-72 (101)
238 PF12231 Rif1_N: Rap1-interact 54.6 3.4E+02 0.0075 30.2 19.3 130 19-149 3-163 (372)
239 PF03130 HEAT_PBS: PBS lyase H 54.4 17 0.00036 24.0 2.9 25 62-86 1-25 (27)
240 PF14500 MMS19_N: Dos2-interac 54.4 2.9E+02 0.0062 29.2 20.1 202 249-455 8-241 (262)
241 KOG1293 Proteins containing ar 54.2 4.5E+02 0.0096 31.3 34.2 139 323-467 389-544 (678)
242 PF05327 RRN3: RNA polymerase 53.5 2.5E+02 0.0055 33.2 14.6 59 410-469 149-210 (563)
243 PF11701 UNC45-central: Myosin 53.5 53 0.0011 31.8 7.6 55 92-147 16-70 (157)
244 KOG2051 Nonsense-mediated mRNA 53.0 3.2E+02 0.007 34.3 15.1 82 401-484 520-607 (1128)
245 cd03569 VHS_Hrs_Vps27p VHS dom 52.9 2.1E+02 0.0046 27.2 12.0 69 249-344 50-118 (142)
246 KOG2137 Protein kinase [Signal 52.2 4.4E+02 0.0096 31.7 15.7 64 240-303 348-416 (700)
247 smart00543 MIF4G Middle domain 51.8 2.4E+02 0.0052 27.5 17.4 43 300-344 8-50 (200)
248 cd03561 VHS VHS domain family; 50.5 2.2E+02 0.0047 26.6 11.9 71 249-344 46-116 (133)
249 KOG2149 Uncharacterized conser 49.3 1.3E+02 0.0029 33.5 10.4 69 84-152 61-131 (393)
250 cd03567 VHS_GGA VHS domain fam 49.0 1E+02 0.0022 29.2 8.5 78 32-109 24-115 (139)
251 PF09478 CBM49: Carbohydrate b 48.8 48 0.001 28.1 5.7 47 660-706 19-74 (80)
252 cd08050 TAF6 TATA Binding Prot 48.7 1.6E+02 0.0035 32.4 11.3 143 5-148 174-339 (343)
253 PF14225 MOR2-PAG1_C: Cell mor 48.6 3.5E+02 0.0077 28.6 19.0 82 294-378 133-218 (262)
254 PF14676 FANCI_S2: FANCI solen 48.2 1.3E+02 0.0029 29.2 9.3 98 308-406 52-152 (158)
255 PF12231 Rif1_N: Rap1-interact 48.0 4.3E+02 0.0093 29.4 18.6 242 25-268 67-351 (372)
256 KOG2199 Signal transducing ada 46.6 1.3E+02 0.0028 33.4 9.5 93 13-105 12-113 (462)
257 smart00185 ARM Armadillo/beta- 46.2 32 0.0007 24.2 3.7 27 82-108 13-39 (41)
258 KOG4524 Uncharacterized conser 45.4 1.7E+02 0.0036 36.3 11.2 147 77-223 799-968 (1014)
259 PF10521 DUF2454: Protein of u 45.0 1.5E+02 0.0032 31.7 10.1 70 234-303 112-201 (282)
260 PF05327 RRN3: RNA polymerase 44.9 4.8E+02 0.01 30.9 15.1 121 305-429 68-208 (563)
261 PRK15192 fimbrial chaperone Bc 44.6 52 0.0011 34.2 6.2 95 644-742 21-142 (234)
262 COG5101 CRM1 Importin beta-rel 44.2 6.3E+02 0.014 30.2 17.0 26 251-276 58-83 (1053)
263 PF08767 CRM1_C: CRM1 C termin 43.0 1.3E+02 0.0028 32.8 9.4 31 460-490 214-244 (319)
264 PF00613 PI3Ka: Phosphoinositi 42.5 93 0.002 31.0 7.5 91 25-130 29-121 (184)
265 PF07571 DUF1546: Protein of u 42.2 88 0.0019 27.4 6.4 59 91-149 16-78 (92)
266 PF14874 PapD-like: Flagellar- 42.1 1.2E+02 0.0026 26.5 7.5 60 648-712 10-72 (102)
267 cd00197 VHS_ENTH_ANTH VHS, ENT 41.4 2.1E+02 0.0044 25.8 9.1 52 22-73 13-64 (115)
268 KOG2005 26S proteasome regulat 41.1 5.5E+02 0.012 30.8 14.0 134 49-188 418-557 (878)
269 cd03572 ENTH_epsin_related ENT 41.1 39 0.00085 31.3 4.2 41 75-115 32-72 (122)
270 KOG0891 DNA-dependent protein 40.7 8.2E+02 0.018 34.2 17.5 267 65-339 463-762 (2341)
271 cd00238 ERp29c ERp29 and ERp38 40.5 2E+02 0.0043 25.3 8.4 59 318-378 10-72 (93)
272 KOG4535 HEAT and armadillo rep 40.3 2.4E+02 0.0053 32.2 10.7 162 91-271 6-181 (728)
273 PF00635 Motile_Sperm: MSP (Ma 40.0 38 0.00082 30.0 3.9 50 658-712 18-68 (109)
274 smart00185 ARM Armadillo/beta- 39.6 46 0.001 23.3 3.7 30 119-148 11-40 (41)
275 PF14837 INTS5_N: Integrator c 38.4 3.1E+02 0.0068 28.0 10.5 43 311-353 3-49 (213)
276 PRK15211 fimbrial chaperone pr 38.4 75 0.0016 32.9 6.3 96 644-744 21-140 (229)
277 PF13251 DUF4042: Domain of un 38.0 3.6E+02 0.0079 26.8 10.8 32 193-224 140-171 (182)
278 PF08389 Xpo1: Exportin 1-like 37.3 2.1E+02 0.0045 26.5 8.8 32 328-359 5-37 (148)
279 PRK09918 putative fimbrial cha 36.9 73 0.0016 33.0 5.9 97 644-744 23-138 (230)
280 PF09324 DUF1981: Domain of un 36.8 1.2E+02 0.0027 26.0 6.5 65 79-144 15-83 (86)
281 PF04744 Monooxygenase_B: Mono 36.6 75 0.0016 34.9 6.0 62 650-711 255-333 (381)
282 PF09759 Atx10homo_assoc: Spin 36.6 90 0.002 28.0 5.6 60 327-386 2-68 (102)
283 KOG0889 Histone acetyltransfer 36.6 1.6E+03 0.034 32.7 22.1 101 77-180 1122-1233(3550)
284 KOG2759 Vacuolar H+-ATPase V1 36.1 52 0.0011 36.7 4.8 68 82-149 367-438 (442)
285 KOG2973 Uncharacterized conser 35.8 84 0.0018 33.8 6.1 65 84-150 6-72 (353)
286 COG5231 VMA13 Vacuolar H+-ATPa 35.4 6.3E+02 0.014 27.6 12.6 87 356-446 330-423 (432)
287 cd00872 PI3Ka_I Phosphoinositi 35.3 1.1E+02 0.0024 30.1 6.6 92 24-130 22-115 (171)
288 PRK11385 putativi pili assembl 35.2 75 0.0016 33.0 5.7 93 644-740 25-145 (236)
289 PRK15295 fimbrial assembly cha 35.0 1.1E+02 0.0023 31.6 6.8 97 644-745 18-139 (226)
290 cd00864 PI3Ka Phosphoinositide 34.7 1.5E+02 0.0033 28.5 7.3 15 93-107 83-97 (152)
291 smart00145 PI3Ka Phosphoinosit 33.9 1.7E+02 0.0038 29.1 7.8 93 24-130 26-120 (184)
292 cd00871 PI4Ka Phosphoinositide 33.9 1.6E+02 0.0036 29.1 7.5 26 59-84 84-109 (175)
293 PF12397 U3snoRNP10: U3 small 33.9 3.6E+02 0.0079 24.4 10.6 64 47-112 7-76 (121)
294 PF05506 DUF756: Domain of unk 33.8 1.4E+02 0.003 25.7 6.4 58 646-712 8-66 (89)
295 PF07539 DRIM: Down-regulated 33.7 51 0.0011 31.4 3.8 44 49-93 20-63 (141)
296 PRK15218 fimbrial chaperone pr 33.4 60 0.0013 33.6 4.6 97 644-744 17-141 (226)
297 PRK15188 fimbrial chaperone pr 33.4 1.1E+02 0.0025 31.6 6.6 99 643-744 25-146 (228)
298 TIGR03079 CH4_NH3mon_ox_B meth 33.2 89 0.0019 34.3 5.9 60 651-711 275-352 (399)
299 KOG2011 Sister chromatid cohes 32.7 3.1E+02 0.0068 34.6 11.1 55 252-306 299-356 (1048)
300 PF07718 Coatamer_beta_C: Coat 32.2 1.7E+02 0.0038 27.7 7.0 66 648-714 59-124 (140)
301 PF00927 Transglut_C: Transglu 31.9 32 0.0007 30.7 2.1 59 657-715 14-78 (107)
302 COG4912 Predicted DNA alkylati 31.9 1.2E+02 0.0025 31.1 6.2 60 88-150 125-184 (222)
303 cd03572 ENTH_epsin_related ENT 31.7 1.8E+02 0.004 26.9 7.0 49 179-227 19-67 (122)
304 PF12031 DUF3518: Domain of un 31.5 73 0.0016 33.1 4.7 85 287-396 135-227 (257)
305 PF11707 Npa1: Ribosome 60S bi 31.4 7.2E+02 0.016 27.1 13.1 190 246-452 32-238 (330)
306 PRK15233 putative fimbrial cha 31.2 1.3E+02 0.0027 31.6 6.6 67 643-712 38-109 (246)
307 KOG1086 Cytosolic sorting prot 30.8 8.4E+02 0.018 27.7 22.3 108 640-767 471-593 (594)
308 cd00197 VHS_ENTH_ANTH VHS, ENT 29.8 2.8E+02 0.0061 24.9 8.0 52 99-152 18-69 (115)
309 COG5369 Uncharacterized conser 29.5 1.9E+02 0.0041 33.6 7.8 137 82-218 432-585 (743)
310 PRK15274 putative periplasmic 29.4 1.1E+02 0.0025 32.2 5.9 97 644-744 25-145 (257)
311 COG1470 Predicted membrane pro 28.7 1.2E+02 0.0025 34.6 6.0 57 657-714 396-453 (513)
312 PF08568 Kinetochor_Ybp2: Unch 28.7 5.1E+02 0.011 31.1 12.2 65 80-148 441-506 (633)
313 cd07064 AlkD_like_1 A new stru 28.6 1.2E+02 0.0027 30.7 6.0 66 52-118 121-187 (208)
314 PRK15299 fimbrial chaperone pr 28.1 1.6E+02 0.0034 30.5 6.6 97 644-744 21-142 (227)
315 smart00288 VHS Domain present 28.0 5E+02 0.011 24.2 12.1 24 250-273 47-70 (133)
316 PF03635 Vps35: Vacuolar prote 27.7 6.1E+02 0.013 31.3 12.5 57 160-226 489-545 (762)
317 KOG4500 Rho/Rac GTPase guanine 27.3 9.8E+02 0.021 27.3 24.6 144 311-454 356-522 (604)
318 PRK13266 Thf1-like protein; Re 27.1 3.2E+02 0.007 28.2 8.5 31 309-339 26-58 (225)
319 cd00870 PI3Ka_III Phosphoinosi 26.8 1.9E+02 0.0041 28.4 6.6 94 22-130 27-122 (166)
320 PRK15224 pili assembly chapero 26.5 1.2E+02 0.0025 31.7 5.4 98 644-745 27-152 (237)
321 PRK15249 fimbrial chaperone pr 26.4 91 0.002 32.8 4.6 96 643-742 26-152 (253)
322 PRK09926 putative chaperone pr 26.3 1.4E+02 0.0031 31.2 6.1 99 643-745 23-152 (246)
323 PF12397 U3snoRNP10: U3 small 26.1 5E+02 0.011 23.5 10.9 88 77-168 2-92 (121)
324 PF06025 DUF913: Domain of Unk 25.8 9.6E+02 0.021 26.8 13.6 59 95-153 70-142 (379)
325 PF13981 SopA: SopA-like centr 25.8 2.1E+02 0.0045 27.1 6.4 53 436-489 67-121 (135)
326 PRK15246 fimbrial assembly cha 25.8 1.6E+02 0.0034 30.7 6.1 95 645-744 10-135 (233)
327 cd08050 TAF6 TATA Binding Prot 25.7 9.2E+02 0.02 26.5 13.1 60 57-116 189-251 (343)
328 PF04388 Hamartin: Hamartin pr 25.5 2.6E+02 0.0055 33.9 8.7 101 46-152 39-143 (668)
329 PF08623 TIP120: TATA-binding 25.4 1.3E+02 0.0027 29.7 5.0 47 82-129 67-115 (169)
330 KOG3723 PH domain protein Melt 25.1 5.4E+02 0.012 30.1 10.4 61 376-436 227-288 (851)
331 cd03565 VHS_Tom1 VHS domain fa 24.7 6E+02 0.013 24.0 12.9 85 252-361 51-137 (141)
332 PF11865 DUF3385: Domain of un 24.7 6E+02 0.013 24.5 9.7 31 246-276 15-47 (160)
333 PRK15253 putative fimbrial ass 24.6 99 0.0022 32.3 4.5 96 645-744 33-156 (242)
334 KOG1992 Nuclear export recepto 24.6 1.4E+03 0.03 28.3 31.0 97 255-351 262-402 (960)
335 PF14961 BROMI: Broad-minded p 24.6 2.7E+02 0.0059 35.5 8.6 127 287-431 173-310 (1296)
336 KOG1924 RhoA GTPase effector D 24.2 1.4E+03 0.03 28.1 25.3 24 474-503 416-439 (1102)
337 cd00869 PI3Ka_II Phosphoinosit 24.1 3.3E+02 0.0071 26.8 7.7 32 60-92 85-116 (169)
338 PF12054 DUF3535: Domain of un 24.0 1.1E+03 0.024 26.9 17.5 51 436-489 290-340 (441)
339 KOG2286 Exocyst complex subuni 24.0 5.4E+02 0.012 31.1 10.7 64 341-404 579-642 (667)
340 KOG2374 Uncharacterized conser 23.0 2.6E+02 0.0056 32.0 7.3 84 308-395 7-91 (661)
341 KOG4199 Uncharacterized conser 22.7 1.1E+03 0.023 26.2 21.5 47 324-370 255-305 (461)
342 COG5593 Nucleic-acid-binding p 22.5 1.3E+03 0.027 27.1 12.5 54 251-307 168-222 (821)
343 KOG1684 Enoyl-CoA hydratase [L 22.4 3.4E+02 0.0073 30.0 7.9 49 288-336 257-306 (401)
344 PF07749 ERp29: Endoplasmic re 22.4 4.6E+02 0.01 23.0 7.6 58 318-377 12-73 (95)
345 KOG2140 Uncharacterized conser 22.4 5.6E+02 0.012 29.8 9.8 25 294-318 165-189 (739)
346 PRK15290 lfpB fimbrial chapero 22.3 2.3E+02 0.005 29.6 6.6 95 645-744 37-158 (243)
347 COG5110 RPN1 26S proteasome re 22.1 1.3E+03 0.029 27.1 15.9 276 47-340 414-705 (881)
348 PF11614 FixG_C: IG-like fold 22.1 1.1E+02 0.0023 27.9 3.7 68 661-731 34-101 (118)
349 PF11701 UNC45-central: Myosin 21.8 1E+02 0.0022 29.8 3.7 91 58-148 17-116 (157)
350 PF12333 Ipi1_N: Rix1 complex 21.7 1.9E+02 0.004 25.8 5.1 50 78-127 8-57 (102)
351 PF00790 VHS: VHS domain; Int 20.6 7E+02 0.015 23.3 12.2 28 249-276 51-78 (140)
352 KOG0392 SNF2 family DNA-depend 20.6 2.6E+02 0.0057 35.8 7.4 101 49-149 819-925 (1549)
353 PRK15254 fimbrial chaperone pr 20.3 2.3E+02 0.0049 29.6 6.1 97 644-744 15-135 (239)
354 PF08752 COP-gamma_platf: Coat 20.1 88 0.0019 30.2 2.7 57 657-713 47-104 (151)
355 KOG4262 Uncharacterized conser 20.1 1E+03 0.022 26.8 10.9 243 121-363 140-425 (496)
No 1
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-124 Score=1043.98 Aligned_cols=691 Identities=63% Similarity=0.961 Sum_probs=632.4
Q ss_pred CCCCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 004132 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (772)
Q Consensus 1 mt~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~ 80 (772)
||+|+|||.+|++|+||+++.|+++|||+|||+++|+..+|+++++++|+|.||+.|+||.+|++|+|+||+++++.+.+
T Consensus 41 Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~e 120 (734)
T KOG1061|consen 41 MTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITE 120 (734)
T ss_pred CccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCC-Cccccc
Q 004132 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEIT 159 (772)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~-~~~~l~ 159 (772)
+++.+++++++|.+|||||+|+.|+.|+|+.+++++++.||.+.|++++.|+||+|++||+++|.||.+.++. ..+.++
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764 568899
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH
Q 004132 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC 239 (772)
Q Consensus 160 ~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~ 239 (772)
++.++++++++++|+||+|+.||+.+.+|.|+++.+++++++++.++|+|+|++|++.++|++++..+++. +....+.
T Consensus 201 ~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~--~~~~~~~ 278 (734)
T KOG1061|consen 201 PQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK--QVNELLF 278 (734)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH--HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877653 3556788
Q ss_pred HhcccchhhccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHh
Q 004132 240 KKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEY 319 (772)
Q Consensus 240 ~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y 319 (772)
+|+.++|++++++.++++|++|++++.+++++|++|..++++|||+|+||+|||.+||+++..+++.+|+.+|+.||.+|
T Consensus 279 ~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eY 358 (734)
T KOG1061|consen 279 KKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEY 358 (734)
T ss_pred HHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCCh
Q 004132 320 ATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDE 399 (772)
Q Consensus 320 ~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~ 399 (772)
++++|.+|+|++|++||+||.|++.. +.||++++++++.+.+||++|+++++++++|+||+.++.++..+|+.++.+++
T Consensus 359 atevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~e 437 (734)
T KOG1061|consen 359 ATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQE 437 (734)
T ss_pred hhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCC
Confidence 99999999999999999999999888 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHH
Q 004132 400 PEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLR 479 (772)
Q Consensus 400 p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvr 479 (772)
|+||++++||+|||++.|+|++++|+.|+++|.+|+.+||+++|||.+|+|+++|.+ ++++++.+|..|+.+++|+|+|
T Consensus 438 peak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~-tq~~l~~vL~~~~~d~~~~dlr 516 (734)
T KOG1061|consen 438 PEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTE-TQELLQGVLPLATADTDNPDLR 516 (734)
T ss_pred hHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHhhhhccccChhhh
Confidence 999999999999999999999999999999999999999999999999999999986 9999999999999999999999
Q ss_pred hhHHHHHHHhcCCHHHHHhhhccCCCCCCCCCCCCChHHHHHHHHhcCcccccccCCchhhhccccccCCCCCCCCCCCC
Q 004132 480 DRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNG 559 (772)
Q Consensus 480 dRA~~y~~Ll~~~~~~~~~ivl~~~p~~~~~~~~~~~~~l~~l~~~~~tl~~vy~kp~~~~~~~~~~~~~~~~~~~~~~~ 559 (772)
|||++|||+|+.++..|+++++++||.++...+.+++.++|+|+++|||+|+||||||+.|+++.+.+....+....-..
T Consensus 517 Dr~l~Y~RlLs~~~~~a~~v~~~~kP~is~~~~~~~p~~le~l~~~i~tlssVY~Kp~~~f~~~~~~~~~~~~~~~~l~~ 596 (734)
T KOG1061|consen 517 DRGLIYWRLLSEDPLIAKDVVLAEKPLISEETDSLDPTLLEELLCDIGTLSSVYHKPPSAFVEGQKGGLFKRDEVGVLLS 596 (734)
T ss_pred hhHHHHHHHhhcCHHHHHHHHhcCCCccccCCCCCCchHHHHHHHhhccccceeecChHHhcCcCcccccCCcchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999887754411111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-CCcCCCCCCCCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCCcccc
Q 004132 560 SEQGYSDAPTHVADEGASPQTSSSNA-PYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVV 638 (772)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (772)
-++ + ++..+|+ ++.. .-+|+++.++. .
T Consensus 597 ----~~~--------s---~~~~~D~~~~~~------------------es~~~~~~~g~------------~------- 624 (734)
T KOG1061|consen 597 ----FAE--------S---QPSIGDLLGGGL------------------ESLDLFDLGGL------------G------- 624 (734)
T ss_pred ----ccc--------c---CCCchhhccCcc------------------cccccccCCCC------------c-------
Confidence 000 0 0000000 0000 00022221110 0
Q ss_pred ccCCCCCCeEEEEEEeeeCCeeEEEEEEEecCCCCccccceeeccCccCcccCCCCCC-CcCCCCCeeeEEEeeeecCCC
Q 004132 639 LPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNM 717 (772)
Q Consensus 639 ~~~~~~~gl~i~~~~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~fgl~~~~~~~~-~~l~p~~~~~~~~~l~~~~~~ 717 (772)
.-+++++.+|.|+.+.+++.+.+||++.+...+|.+||| | .| +.+. .+..|+++...++|+++.++.
T Consensus 625 -----t~~~e~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~f~----~-a~--s~~~~~P~~~~~~~~~~~~l~~~~~~ 692 (734)
T KOG1061|consen 625 -----TLSLEVSSQFTRKEGELVIYMKFTNKANSIRIDFEIQFN----G-AP--SLANSKPLLPNGKAVDSLPLGTFGLM 692 (734)
T ss_pred -----ccchhhhcceecccccccccccccccccchhhhhHhhcC----C-CC--cccCCCCCccccchhhccCcchhhhh
Confidence 011789999999999999999999999999999999999 4 22 2333 488899999999999999999
Q ss_pred CCCCCCcchhhhhhcCCCCeEEEeeccccchhcccCCCCChhhHHHhcccccc
Q 004132 718 SAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLEVKTCSFV 770 (772)
Q Consensus 718 ~~~~~~~~lqvAik~n~~~v~yf~~~~p~~~l~~~~g~~~~~~F~~~W~~~~~ 770 (772)
.+++|..++|+|+||| .+..+...+|.++|+| |+++|+.+|+
T Consensus 693 ~~~~~~~~~q~~~~~~-------~~~~~~~~~~v~~~~~----~~~t~~~~~~ 734 (734)
T KOG1061|consen 693 RPMEPLSNLQEAVKNN-------KALNMLKTLFVEDGSM----FLATWKGIPN 734 (734)
T ss_pred ccCCCcchHHHHHhch-------HhhccchhHHHHHHHH----HHHhhccCCC
Confidence 9999999999999999 5678889999999999 9999999986
No 2
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=2e-114 Score=1007.56 Aligned_cols=608 Identities=36% Similarity=0.625 Sum_probs=545.9
Q ss_pred CCCCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 004132 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (772)
Q Consensus 1 mt~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~ 80 (772)
||+|+|||++|++|+++++|+|+++|||||||+++|++.+||+++|+||+|+||++|+||+|||+|||+||+|+.+++++
T Consensus 60 mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e 139 (746)
T PTZ00429 60 MTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLE 139 (746)
T ss_pred HHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccH
Q 004132 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (772)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~ 160 (772)
++.++|++++.|++|||||+||+|++|+|+.+|+.+++.+|.+.|.+||.|+||+|++||+.+|++|++.++. .+.+.+
T Consensus 140 ~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~-~l~l~~ 218 (746)
T PTZ00429 140 YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE-KIESSN 218 (746)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch-hhHHHH
Confidence 9999999999999999999999999999999999998888999999999999999999999999999987654 477889
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHH
Q 004132 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240 (772)
Q Consensus 161 ~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~ 240 (772)
+.+++|++.|.+++||+|++||++|.+|.|.+.+++.++++++.++|+|+|+||+++|+|+++++.++. +++..+++++
T Consensus 219 ~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~ 297 (746)
T PTZ00429 219 EWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIERCTV 297 (746)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986544 4677888888
Q ss_pred hcccchhhccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhh
Q 004132 241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA 320 (772)
Q Consensus 241 ~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~ 320 (772)
|+.++|++|+++++|+||++|++|..|++++|.+|.+|+++|||+++||.|||++||++|++|||++|++.|++||.+|+
T Consensus 298 rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa 377 (746)
T PTZ00429 298 RVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYA 377 (746)
T ss_pred HHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhc--ccCC
Q 004132 321 TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESL--DTLD 398 (772)
Q Consensus 321 ~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l--~~~~ 398 (772)
++.|.+|++++|++||+||.|++..++||+++|+++++.+++++. +++.++++|+|+||+.+ ++..|++.+ +.+.
T Consensus 378 ~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~-e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~ 454 (746)
T PTZ00429 378 SGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLP-QVVTAAKDIVRKYPELL--MLDTLVTDYGADEVV 454 (746)
T ss_pred hcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHHCccHH--HHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999998887754 78999999999999864 788888865 7889
Q ss_pred hHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHH
Q 004132 399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478 (772)
Q Consensus 399 ~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dv 478 (772)
+|+||++++||+|||++.+++++++|+.++++|.+|+++||+++|||++|+|+++|++ .+++++++|+.++.+++|+||
T Consensus 455 e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL~~~t~~~~d~DV 533 (746)
T PTZ00429 455 EEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVLETVTTHSDDPDV 533 (746)
T ss_pred cHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHhcCCChhH
Confidence 9999999999999999999999999999999999999999999999999999999986 889999999998888899999
Q ss_pred HhhHHHHHHHhcCCH--HHHHhhhccCCCCCCCCCCCCChHHHHHHHHhcCcccccccCCchhhhccccccCCCCCCCCC
Q 004132 479 RDRAYIYWRLLSTDP--EAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDY 556 (772)
Q Consensus 479 rdRA~~y~~Ll~~~~--~~~~~ivl~~~p~~~~~~~~~~~~~l~~l~~~~~tl~~vy~kp~~~~~~~~~~~~~~~~~~~~ 556 (772)
||||++|||||+.++ +.+++||++++|++...++..|+.++++|+.+|||+|+|||||++.|+++......+++||++
T Consensus 534 RDRA~~Y~rLLs~~~~~~~a~~iv~~~~~~i~~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~f~~~~~~~~~~~~~~~~ 613 (746)
T PTZ00429 534 RDRAFAYWRLLSKGITVAQMKKVVHGQMVPVNVDSTFSDAMTMADLKKSLNTAAIVFARPYQSFLPPYGLADVELDEEDT 613 (746)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCceeeeecCCHHHhcCchhccccccccccc
Confidence 999999999999875 668999999999998777778888999999999999999999999999998876654444443
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCC------CCCCCcCCCCCCCCCCCCCCCCCCCcccccccC
Q 004132 557 PNGSEQG-YSDAPTHVADEGASPQTSS------SNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGL 615 (772)
Q Consensus 557 ~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~ 615 (772)
+++++++ .+.++.+.+ .++|.++.. ....|...++|++.+.+++..+-.+.++|+||+
T Consensus 614 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (746)
T PTZ00429 614 EDDDAVELPSTPSMGTQ-DGSPAPSAAPAGYDIFEFAGDGTGAPHPVASGSNGAQHADPLGDLFSG 678 (746)
T ss_pred cchhhccCCCCCCCCCC-CCCCCcccccccchhhhhcccCCCCCCccccCCccccccCcHHHHhcC
Confidence 3332222 222221111 122222211 112233346676655555555667889999996
No 3
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-89 Score=754.02 Aligned_cols=731 Identities=31% Similarity=0.485 Sum_probs=574.7
Q ss_pred CCCCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 004132 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (772)
Q Consensus 1 mt~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~ 80 (772)
|..|+|||.+|++|||+++++|.++|||+|+|+.+||+++||+++|.||||||+|.|+||++||-|||+|++||++.+++
T Consensus 63 iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaP 142 (968)
T KOG1060|consen 63 IAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIRVPMIAP 142 (968)
T ss_pred HhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccH
Q 004132 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (772)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~ 160 (772)
.++-.|++|..|.+|||||+||.|+.|+|..+|+.-. .+.+.+..||.|++|.|+++|+.|+.|+|.. .++++|
T Consensus 143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~--qL~e~I~~LLaD~splVvgsAv~AF~evCPe----rldLIH 216 (968)
T KOG1060|consen 143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD--QLEEVIKKLLADRSPLVVGSAVMAFEEVCPE----RLDLIH 216 (968)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH--HHHHHHHHHhcCCCCcchhHHHHHHHHhchh----HHHHhh
Confidence 9999999999999999999999999999999999866 4899999999999999999999999999754 589999
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHhccccCC---------------------------------HHHHHHHHHHHhHhh
Q 004132 161 HTLSKLLTALNECTEWGQVFILDALSRYKAAD---------------------------------AREAENIVERVTPRL 207 (772)
Q Consensus 161 ~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~---------------------------------~~e~~~il~~v~~~L 207 (772)
+++++||+.|.+.++|+|+.++.+|.+|++.. +.+...+++...++|
T Consensus 217 knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl 296 (968)
T KOG1060|consen 217 KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLL 296 (968)
T ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHH
Confidence 99999999999999999999999999997420 234566788889999
Q ss_pred cCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccC
Q 004132 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYN 287 (772)
Q Consensus 208 ~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~ 287 (772)
++.|++||++++++++++.+. .. ..+++.+|++||.+.+++||++|++|..|+.++|.+|.+|++.||+...
T Consensus 297 ~S~n~sVVmA~aql~y~lAP~----~~----~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ss 368 (968)
T KOG1060|consen 297 QSRNPSVVMAVAQLFYHLAPK----NQ----VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSS 368 (968)
T ss_pred hcCCcHHHHHHHhHHHhhCCH----HH----HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecC
Confidence 999999999999999986432 11 1257788999999999999999999999999999999999999999999
Q ss_pred CcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHH
Q 004132 288 DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQE 367 (772)
Q Consensus 288 d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e 367 (772)
||.-+|..||++|..|+|+.|+..|++||+.|+.+.|-+|+..+|++||+||.+.-...+.|++.|+.+++.....|+.|
T Consensus 369 Dp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~e 448 (968)
T KOG1060|consen 369 DPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAE 448 (968)
T ss_pred CHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccCC-HHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 004132 368 AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTAT 446 (772)
Q Consensus 368 ~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~-~~~~L~~l~~~f~~e~~~vq~~lLta~ 446 (772)
++++|+.++++.|-.+..++.+|.+.++.+.-|.||+.++|++|||++.++. ++|+||.++++|.+|.++||+|+|...
T Consensus 449 aV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~ 528 (968)
T KOG1060|consen 449 AVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLS 528 (968)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998875 799999999999999999999999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCH---HHHHhhhccCCCCCCCCCCCCChH-HHHHH
Q 004132 447 VKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDP---EAAKDVVLAEKPVISDDSNQLDPS-LLDEL 522 (772)
Q Consensus 447 ~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~~~---~~~~~ivl~~~p~~~~~~~~~~~~-~l~~l 522 (772)
+|++....++ +..+++++++.+.+| .++|+||||+|+..|+.... +.+++++++.||....++..-+.. .++.+
T Consensus 529 aKLyl~~~~~-~kll~~Yv~~L~~yD-~sYDiRDRaRF~r~l~~~~~~Ls~h~~ei~l~~Kpa~~~es~f~~~~~~~gsl 606 (968)
T KOG1060|consen 529 AKLYLTNIDQ-TKLLVQYVFELARYD-LSYDIRDRARFLRQLISPLEALSKHAREIFLASKPAPVLESSFKDRHYQLGSL 606 (968)
T ss_pred hhheEechhh-HHHHHHHHHHHhccC-CCcchhHHHHHHHHHhccHHHHHHHHHHHhhccCCCccCcccccCCCcccchH
Confidence 9999998875 889999999998876 89999999999999987543 578999999987543333222221 23333
Q ss_pred HHhcCcccccccCCchh--hhccc-------cccCCCCCCCCCCC---------CCCCCCCCCCCCCC--CCCCC--C--
Q 004132 523 LANIATLSSVYHKPPEA--FVTRV-------KTTASRTDDEDYPN---------GSEQGYSDAPTHVA--DEGAS--P-- 578 (772)
Q Consensus 523 ~~~~~tl~~vy~kp~~~--~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--~~~~~--~-- 578 (772)
-.-++.=+..|...|.+ +.... +......++++.++ +.+++++.+.+.+. .+..+ +
T Consensus 607 S~lLn~~a~GY~~lp~~~~~~~d~~~~~~~a~~~~~~~e~~e~~~~~~~s~~~ses~~~~~~~~e~ge~~dsn~~~~~~~ 686 (968)
T KOG1060|consen 607 SLLLNAPAPGYEPLPNWPAVAPDPFPDSERAKLLDSDSEEEETGDDESWSDPESESGESSNFSREGGEENDSNEEKDSED 686 (968)
T ss_pred HHHhcCcCcCCccCCCccccCCCCCcchhhcccccCCccccccccccCCCCCccccccCCcccccccccccccccccccc
Confidence 33356667777776643 11111 00000111111111 00000000000000 00000 0
Q ss_pred -CCC--------CCCCCCcCCCCCCC-CCCCCCCCCCCCcccccccCCCCCccccCCC-----------------CC---
Q 004132 579 -QTS--------SSNAPYAATRQPAP-PPAAPVSPPVPDLLGDLIGLDNSAAIVPADQ-----------------AA--- 628 (772)
Q Consensus 579 -~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~-----------------~~--- 628 (772)
.++ ..+.++.+.+-..+ +......+...+...|+-++... .+.|... +.
T Consensus 687 d~sdqss~~~ss~~d~~s~se~e~e~~~e~~k~~pet~~~sl~l~d~~~~-n~~P~~~~~~~~~l~~d~~~~~~~~s~~~ 765 (968)
T KOG1060|consen 687 DFSDQSSYEESSAEDSESSSEAESEPTPEKLKEKPETKDVSLDLNDFTPQ-NGKPVLPERNDPDLAADDEFFSLTGSRNS 765 (968)
T ss_pred cccccchhccccccccccccccccccCCCccCCCcccccccccccccCCC-CCCCCCCCCCChhhhcccccccccccccc
Confidence 000 01111111100000 00000000111111122221100 0001000 00
Q ss_pred -C----CCCCC-ccccccCCCCCCeEEEEEEeeeCCeeEEEEEEEecCCCCccccceeeccCccCcccCCCCCCCcCCCC
Q 004132 629 -A----SPVPA-LPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPG 702 (772)
Q Consensus 629 -~----~~~~~-~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~fgl~~~~~~~~~~l~p~ 702 (772)
+ ...+. ..+.++..+|+|+.+..+|.|.++ +.+.+.+||++..++.++.+ |-+||++...+..+..++||
T Consensus 766 ~~~~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~~-~~i~~~~~n~~~~~~~~~~l---~~p~gm~i~ef~~i~s~~pg 841 (968)
T KOG1060|consen 766 KPLKIPTHIEEKSIELLNEVEGSGLDLEYSFSRLPD-VSISLHFTNKSDLELLGIHL---KLPAGMSIKEFSPIESLPPG 841 (968)
T ss_pred ccccCCccCcchhHhhhhhcccCCcceeeeccCCCC-eeEEEecccCCCccccccee---eccccccccccccccccCCC
Confidence 0 00111 235667789999999999999985 99999999999999999999 88999999988888899999
Q ss_pred CeeeEEEeeeecCCCCCCCCCcchhhhhhcCCCCeEEEeeccccchhcccCCCCChhhHH
Q 004132 703 TSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFL 762 (772)
Q Consensus 703 ~~~~~~~~l~~~~~~~~~~~~~~lqvAik~n~~~v~yf~~~~p~~~l~~~~g~~~~~~F~ 762 (772)
++..+.+.++|++..+.. ..|+-.+. | +|+...|..-+..+ .+|++..|.
T Consensus 842 ~~~~~~~~i~F~dst~~~----~~~l~~~~---g--~~~~~~pvge~~~~-v~~~~~~~~ 891 (968)
T KOG1060|consen 842 ASASVVLGIDFCDSTQAA----EWQLLTDD---G--RVRFQPPVGELVQP-VRMSEEDFK 891 (968)
T ss_pred cceeeeeeeeccccccce----eEEEEecc---C--cEEecCchhhhhcc-ccCCHHHHH
Confidence 999999999999876643 35655443 3 55655665555444 345666664
No 4
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-80 Score=686.86 Aligned_cols=493 Identities=22% Similarity=0.337 Sum_probs=431.1
Q ss_pred CCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHH
Q 004132 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 82 (772)
Q Consensus 3 ~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l 82 (772)
+|||.+|+.++++|+++++++..||+|||+++.++++++|+.+|+||+++|||+|+|.+++|+||+++|+|.++||++.+
T Consensus 64 LGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~Emardl 143 (866)
T KOG1062|consen 64 LGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDL 143 (866)
T ss_pred hCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC--cccccH
Q 004132 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP--IFEITS 160 (772)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~--~~~l~~ 160 (772)
.|.|.+++++++|||||||++|+.|++++.|++++. |+....++|+|+||+|+.+++..+.++|+.++.. .|+-..
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~--f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~ 221 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH--FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLV 221 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH--hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999997 9999999999999999999999999999986543 243344
Q ss_pred HHHHHHHHHhhc------------CChhHHHHHHHHHhccccCCHHHHHH----HHHHHhHh---hcCCCHHHHHHHHHH
Q 004132 161 HTLSKLLTALNE------------CTEWGQVFILDALSRYKAADAREAEN----IVERVTPR---LQHANCAVVLSAVKM 221 (772)
Q Consensus 161 ~~~~~Ll~~L~~------------~~ew~qv~iL~~L~~~~~~~~~e~~~----il~~v~~~---L~~~n~aVv~eaik~ 221 (772)
+.+.++|+.+.. ++||+|++||++|+.++..|. ++.+ ++.+|... -++++.||+||||++
T Consensus 222 ~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~-daSd~M~DiLaqvatntdsskN~GnAILYE~V~T 300 (866)
T KOG1062|consen 222 PSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA-DASDLMNDILAQVATNTDSSKNAGNAILYECVRT 300 (866)
T ss_pred HHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHhcccccccchhHHHHHHHHH
Confidence 455566666532 689999999999999986544 3333 44444433 246778999999999
Q ss_pred HHHhhhhcCChHHHHHHHHhcccchhhccCCchhHHHHHHHHHHHHHhhChhhhhhhc-ceeeeccCCcHhHHHHHHHHH
Q 004132 222 ILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEI-KVFFCKYNDPIYVKMEKLEIM 300 (772)
Q Consensus 222 i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~-~if~~~~~d~~~Ik~~kL~lL 300 (772)
|+.+ .....++.++.++.+ .+|++++.|+||+||+.+.+.++..|.++++|. .++.|+.+.|.+|||||||++
T Consensus 301 I~~I----~~~~~LrvlainiLg--kFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs 374 (866)
T KOG1062|consen 301 IMDI----RSNSGLRVLAINILG--KFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELS 374 (866)
T ss_pred HHhc----cCCchHHHHHHHHHH--HHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 9974 445567776655543 245588999999999999999999999999886 589999999999999999999
Q ss_pred HHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhC-
Q 004132 301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY- 379 (772)
Q Consensus 301 ~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~- 379 (772)
|+|+|++|++.+++||++|+..+|++|+..++..|..+|++|++...|++|+++++++.+|+||.+++|..+..++.+-
T Consensus 375 ~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~ 454 (866)
T KOG1062|consen 375 YALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAF 454 (866)
T ss_pred HHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred cccHHHHHHHHHHhcc-----cCChHHHHHHHHHHHhhhccccCC--------------HHHHHHHHhhhCCCCCHHHHH
Q 004132 380 PNTYESIIATLCESLD-----TLDEPEAKASMIWIIGEYAERIDN--------------ADELLESFLESFPEEPAQVQL 440 (772)
Q Consensus 380 p~~~~~ii~~L~~~l~-----~~~~p~a~~~~iwilGEy~~~i~~--------------~~~~L~~l~~~f~~e~~~vq~ 440 (772)
++.+++.+.+|+..+. +++++...++++|||||||++.-+ ..++|+.++.++. .+..+|.
T Consensus 455 ~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~-s~~~tk~ 533 (866)
T KOG1062|consen 455 QELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHS-SDSTTKG 533 (866)
T ss_pred cchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhcc-chHHHHH
Confidence 8899999999987663 255565689999999999986633 2355666666655 4599999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHHHHHhhhccCCCCCCC
Q 004132 441 QLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISD 509 (772)
Q Consensus 441 ~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~~~~~~~~ivl~~~p~~~~ 509 (772)
++|+|++||..|.++ ..+.+++++.. +..|.|.|+||||+||..|+.. ...+++.+++.||.++.
T Consensus 534 yal~Al~KLSsr~~s--~~~ri~~lI~~-~~~s~~~elQQRa~E~~~l~~~-~~~lr~siLe~mp~~e~ 598 (866)
T KOG1062|consen 534 YALTALLKLSSRFHS--SSERIKQLISS-YKSSLDTELQQRAVEYNALFAK-DKHLRKSILERMPSCED 598 (866)
T ss_pred HHHHHHHHHHhhccc--cHHHHHHHHHH-hcccccHHHHHHHHHHHHHHHH-HHHHHHHhcccCccccc
Confidence 999999999999996 56788888886 4578999999999999999975 46788899999998765
No 5
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-74 Score=627.92 Aligned_cols=716 Identities=18% Similarity=0.255 Sum_probs=532.6
Q ss_pred CCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHH
Q 004132 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 82 (772)
Q Consensus 3 ~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l 82 (772)
+|+|+.|++++.+++++++.+..|.+|||+++.+.++++|+.-|++|+++|||.++||...+|||.++|+|+..+|++.+
T Consensus 68 lg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~ 147 (938)
T KOG1077|consen 68 LGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAF 147 (938)
T ss_pred hcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCC--CChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCc---cc
Q 004132 83 CDPLQRCLKD--DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI---FE 157 (772)
Q Consensus 83 ~~~v~~~L~d--~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~---~~ 157 (772)
.++|-|+|.+ +.+||||+||+|++++|+.+||++...+|.+++..||+|++-+|+.++..++.-|++..++.. +.
T Consensus 148 ~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~ 227 (938)
T KOG1077|consen 148 ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP 227 (938)
T ss_pred hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH
Confidence 9999999986 778999999999999999999999988999999999999999999999999988888776542 22
Q ss_pred ccHHHHHHHHHHh----h------cCChhHHHHHHHHHhccccCC-HH---HHHHHHHHHhHhhc---------CCC--H
Q 004132 158 ITSHTLSKLLTAL----N------ECTEWGQVFILDALSRYKAAD-AR---EAENIVERVTPRLQ---------HAN--C 212 (772)
Q Consensus 158 l~~~~~~~Ll~~L----~------~~~ew~qv~iL~~L~~~~~~~-~~---e~~~il~~v~~~L~---------~~n--~ 212 (772)
+....+.+++..- . -++||+|++++|+|+.|.+.+ +. ...++++++....+ |+| .
T Consensus 228 ~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~n 307 (938)
T KOG1077|consen 228 LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKN 307 (938)
T ss_pred HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHH
Confidence 2222233333321 1 268999999999999996433 22 22345555554332 333 5
Q ss_pred HHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhCh--hhhhhhcc-eeeecc-C
Q 004132 213 AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP--TILAHEIK-VFFCKY-N 287 (772)
Q Consensus 213 aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p--~~~~~~~~-if~~~~-~ 287 (772)
||+||||++++++ + +.+++ ..++...|..+++ +++|+||++|+++..++...+ +.++.|.. +|-.+. +
T Consensus 308 aVLFeaI~l~~h~-D--~e~~l----l~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkte 380 (938)
T KOG1077|consen 308 AVLFEAISLAIHL-D--SEPEL----LSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTE 380 (938)
T ss_pred HHHHHHHHHHHHc-C--CcHHH----HHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccc
Confidence 9999999999985 1 23443 3456666788885 799999999999999987754 45777765 454444 7
Q ss_pred CcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHH
Q 004132 288 DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQE 367 (772)
Q Consensus 288 d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e 367 (772)
.|.+||++++|+||.||+.+|++.||.||+.|+...|..++++++-+++.+|+||+.+.+||||++++|++.+|+|+.+|
T Consensus 381 rDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsde 460 (938)
T KOG1077|consen 381 RDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDE 460 (938)
T ss_pred cchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHH-HHHHHHHHhhhccccCC-----HHHHHHHHhhhCCCCCHHHHHH
Q 004132 368 AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEA-KASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQLQ 441 (772)
Q Consensus 368 ~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a-~~~~iwilGEy~~~i~~-----~~~~L~~l~~~f~~e~~~vq~~ 441 (772)
+|.++.+|+.++++.+.++..+++++|....-.|. ..+..|++||||++|.+ +...+..+.+.|+..++.+|..
T Consensus 461 VW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~l 540 (938)
T KOG1077|consen 461 VWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRAL 540 (938)
T ss_pred HHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHH
Confidence 99999999999999999999999999975332232 35578999999999964 6788999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHHHHHhhhccCCCCCCCCCCCCChHHHHH
Q 004132 442 LLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDE 521 (772)
Q Consensus 442 lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~~~~~~~~ivl~~~p~~~~~~~~~~~~~l~~ 521 (772)
+||+..|++...|+ .+..|+++++. .....|+|+||||+||+.|.+.....+-+.|+++||+|.+.. ..++.+
T Consensus 541 LLtTyiKl~nl~PE--i~~~v~~vFq~-~~n~~D~ElQqRa~EYLql~k~as~dvL~~vleeMPpF~er~----ssll~k 613 (938)
T KOG1077|consen 541 LLTTYIKLINLFPE--IKSNVQKVFQL-YSNLIDVELQQRAVEYLQLSKLASTDVLQTVLEEMPPFPERE----SSLLKK 613 (938)
T ss_pred HHHHHHHHHhhChh--hhHHHHHHHHh-hcccCCHHHHHHHHHHHHHHHhccchHHHHHHhhCCCCcccc----chHHHH
Confidence 99999999999995 89999999996 456799999999999999998765567889999999998753 455655
Q ss_pred HHHhcCcccccccCCchhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CcCC---CCCCCCC
Q 004132 522 LLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAP-YAAT---RQPAPPP 597 (772)
Q Consensus 522 l~~~~~tl~~vy~kp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~ 597 (772)
|-. .||+..-++..+ ++.....+....++++++...... +.+. +++.++.
T Consensus 614 l~~---------~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~tp~~v~~~s~st~~~~v~~~p~~n 667 (938)
T KOG1077|consen 614 LKK---------KKPSAISLRAGA-----------------GPKTLANPPPVASEPTPSKVSKRSNSTDPLSVPSPPPPN 667 (938)
T ss_pred hhc---------cCCchhcccccc-----------------CCcccCCCCcccCCCCcccccCCCCCCCcccCCCCCCCC
Confidence 521 122211000000 000000000000111222211111 1111 1111111
Q ss_pred CCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCC-------ccccccC---CCCCCeEEEEEEeeeCCeeEEEEEEE
Q 004132 598 AAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPA-------LPVVLPA---STGQGLQIGAELTRQDGQVFYSMLFE 667 (772)
Q Consensus 598 ~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~---~~~~gl~i~~~~~~~~~~~~~~~~~t 667 (772)
.+.....+.....|+|+.-.+ ..+ . ...|+ +-.|... ++..-++|...-+-++++-.|.|.+.
T Consensus 668 ~t~~~~~~~~~~~di~s~~~~-~~s-~-----~~~p~~~~~~f~r~~~k~~GVLfed~~iQIgvk~e~r~~~grl~Lfyg 740 (938)
T KOG1077|consen 668 NTISSVNSQIPSVDIFSGLDG-YYS-R-----QILPGNAFYGFTRFCSKDNGVLFEDSLIQIGVKSETRNNLGRLYLFYG 740 (938)
T ss_pred CCccCCCCCCCchhhhcCccc-ccc-c-----cCCChhhhhhhhhheeccCcEEeeccceeEEEeeeccCcCCeEEEEec
Confidence 111111223334455553211 000 0 00111 1111100 12234688888888888889999999
Q ss_pred ecCCCCccccceeeccCcc---CcccCCCCCCCcCCCCCeeeEEEeeeecCCCCCCCCCcchhhhhhcCCC-CeEE--Ee
Q 004132 668 NNTQTPLDGFMIQFNKNTF---GLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQ-PVWY--FN 741 (772)
Q Consensus 668 N~~~~~~~~f~~q~n~n~f---gl~~~~~~~~~~l~p~~~~~~~~~l~~~~~~~~~~~~~~lqvAik~n~~-~v~y--f~ 741 (772)
|++..++++|.-++=.-.+ -|+....+.-+.++||.+++..+-+.+-..+.. ++-|.|..|..+- ..+= +.
T Consensus 741 Nkts~~lt~~s~~ii~~~~~~~~L~~~~kpv~~ti~~g~qvQQ~~~v~~i~d~~d---~pil~isfk~g~ti~~~ta~l~ 817 (938)
T KOG1077|consen 741 NKTSVPLTSLSPTIIPPGNLELHLAVQNKPVTATIPPGAQVQQSLEVSCIRDFED---PPILAISFKFGGTINLKTAILK 817 (938)
T ss_pred ccccccccccceeeecCCchhhhhhhcCcccCCCCCccceecceeeeeeeccccc---CCeEEEEEEeCCchhhhhhcee
Confidence 9999999999877655211 222111122248999988888877766665544 4577888888632 2333 33
Q ss_pred eccccchhcccCCCCChhhHHHhccccc
Q 004132 742 DKISLHVLFTEDGRMERGSFLEVKTCSF 769 (772)
Q Consensus 742 ~~~p~~~l~~~~g~~~~~~F~~~W~~~~ 769 (772)
.|+-++.+|.+ -.|+-++|...||.+.
T Consensus 818 lp~~iskf~~P-t~l~s~~Ff~rWk~ls 844 (938)
T KOG1077|consen 818 LPVLISKFFQP-TELTSEDFFSRWKQLS 844 (938)
T ss_pred chhhHhhhcCc-ccccHHHHHHHHHhcc
Confidence 44444555555 9999999999999875
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=9.8e-75 Score=671.90 Aligned_cols=482 Identities=37% Similarity=0.644 Sum_probs=435.1
Q ss_pred CCCCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 004132 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (772)
Q Consensus 1 mt~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~ 80 (772)
|++|+|++++|++|+++++++|++.||+||+|++.|++.+||+++|++|+++||++|+||++||+|||+||+++++++++
T Consensus 34 ~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~ 113 (526)
T PF01602_consen 34 MMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAE 113 (526)
T ss_dssp HHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHH
T ss_pred HHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccH
Q 004132 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (772)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~ 160 (772)
.+.+.|.+++.|++|||||+|++|++|+|+.+|+.++.. |.+.+.++|.|+|++|+.+|+.++.+| ...+.....+.+
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~ 191 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP 191 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH
Confidence 999999999999999999999999999999999999875 899999999999999999999999999 222221125677
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHH--HHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHH
Q 004132 161 HTLSKLLTALNECTEWGQVFILDALSRYKAADAREA--ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNL 238 (772)
Q Consensus 161 ~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~--~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l 238 (772)
+.+++|++.+..++||+|+.++++|..|.+.+..+. ..+++.+.+.+++++++|++||+++++++.+ .+. +
T Consensus 192 ~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~~~----~ 264 (526)
T PF01602_consen 192 KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP---SPE----L 264 (526)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SHH----H
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc---chH----H
Confidence 778888888899999999999999999999988888 7899999999999999999999999998643 333 3
Q ss_pred HHhcccchhhccC-CchhHHHHHHHHHHHHHhhC-hhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHH
Q 004132 239 CKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR-PTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF 316 (772)
Q Consensus 239 ~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~-p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL 316 (772)
..+++++|+++++ +++|+||++|++|..+++.+ +.++..+...|++++++|.+||++||++|+.++|++|++.|++||
T Consensus 265 ~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL 344 (526)
T PF01602_consen 265 LQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDEL 344 (526)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHH
Confidence 3457778888884 78999999999999999999 455555566777888999999999999999999999999999999
Q ss_pred HHhhhhc-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcc
Q 004132 317 KEYATEV-DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLD 395 (772)
Q Consensus 317 ~~y~~~~-d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~ 395 (772)
.+|+++. |.+++++++++|+.+|.++++..+||++++++++..+++++..++|..++++++++|+.++.++..+++.++
T Consensus 345 ~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~ 424 (526)
T PF01602_consen 345 LKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLE 424 (526)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHT
T ss_pred HHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHH
Confidence 9999655 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhhhccccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHhhhc
Q 004132 396 TLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGP-QQMIQVVLNNATV 471 (772)
Q Consensus 396 ~~~~p~a~~~~iwilGEy~~~i~~---~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~-~~~v~~vl~~~~~ 471 (772)
++.+++++++++|++|||++.+++ +.++++.++++|.++++.||.++||+++|++.+.|.++. +.+++.+.+.+++
T Consensus 425 ~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~ 504 (526)
T PF01602_consen 425 DISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATE 504 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHH
T ss_pred HhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcc
Confidence 999999999999999999999998 999999999999999999999999999999999996324 3677777777776
Q ss_pred CCCChHHHhhHHHHHHHhcC
Q 004132 472 ETDNPDLRDRAYIYWRLLST 491 (772)
Q Consensus 472 ~s~~~dvrdRA~~y~~Ll~~ 491 (772)
++.|+||||||+|||+||+.
T Consensus 505 ~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 505 DSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp S-SSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcc
Confidence 78899999999999999974
No 7
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=9.5e-68 Score=602.19 Aligned_cols=539 Identities=39% Similarity=0.606 Sum_probs=465.3
Q ss_pred CCCCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 004132 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (772)
Q Consensus 1 mt~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~ 80 (772)
|+.|+|||.+|++|+|.+.|.|.++|||+|+|+.+|++.+|++++|++|+|+||++|+||.+||+|||+||.++.+++.+
T Consensus 47 M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~ 126 (757)
T COG5096 47 MSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLG 126 (757)
T ss_pred HhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccH
Q 004132 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (772)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~ 160 (772)
+++++|++|+.|++|||||+||+|+.|+|+.+++++.+.|..+.+..++.|.||.|++||+.+|.+|.+......+.-..
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~ 206 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAHGYSLEVI 206 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999998752221111111
Q ss_pred HHHHHHHHHhhc-CChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH
Q 004132 161 HTLSKLLTALNE-CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC 239 (772)
Q Consensus 161 ~~~~~Ll~~L~~-~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~ 239 (772)
..+.++.-.... +++|.+..++..|..+.+.++.+++.+.+++.+.++|.|++|+..+++.++.+.+++.+.. +.
T Consensus 207 ~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~----~~ 282 (757)
T COG5096 207 LRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNN----LF 282 (757)
T ss_pred HHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhcccc----HH
Confidence 112221111122 3599999999999999998888999999999999999999999999999999887665432 45
Q ss_pred HhcccchhhccCCc-hhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHH
Q 004132 240 KKMAPPLVTLLSAE-PEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 318 (772)
Q Consensus 240 ~~~~~~L~~Lls~~-~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~ 318 (772)
.+..++|++|+..+ ..++|+..+++..+....+..+....+.|+|.++||.|++.+|++.++.+++.+|..+++.|+.+
T Consensus 283 ~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~ 362 (757)
T COG5096 283 LISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIY 362 (757)
T ss_pred HhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Confidence 56788899999755 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hccchhHHHH-----HHHHH---HHHHhCccc-HH
Q 004132 319 YATE--VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK---IKVNYVVQEA-----IIVIK---DIFRRYPNT-YE 384 (772)
Q Consensus 319 y~~~--~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~---~~~~~v~~e~-----i~~l~---~i~~~~p~~-~~ 384 (772)
|+.+ .|.+++++++++||.++.+.+.....|++.+++++. ..++|+.+|+ |.+++ .++|.+|+- .+
T Consensus 363 y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~ 442 (757)
T COG5096 363 YIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPK 442 (757)
T ss_pred HHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCcchh
Confidence 9998 999999999999999999998888999999999999 9999999998 66665 778887766 33
Q ss_pred HHHHHHHHhcccCC----hHHHHHHH-----HHHHhhhccccCCH-HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCC
Q 004132 385 SIIATLCESLDTLD----EPEAKASM-----IWIIGEYAERIDNA-DELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 454 (772)
Q Consensus 385 ~ii~~L~~~l~~~~----~p~a~~~~-----iwilGEy~~~i~~~-~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p 454 (772)
..+..++...+.++ +|.++.++ +|++|||++.+..- +++++.++.+|.+|+.+||.+++++.+|++...+
T Consensus 443 ~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~~~~~l~~~~~~~~~E~levq~~Il~~svkl~~~~~ 522 (757)
T COG5096 443 ILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSDIIPRLEPELLRIAISNFVDETLEVQYTILMSSVKLIANSI 522 (757)
T ss_pred hhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhCc
Confidence 33444444444444 79999888 99999999988764 5899999999999999999999999999999987
Q ss_pred CCChH----HHHHHHHHhhhcCCCChHHHhhHHHHHHHhcC-CHHHHHhhhccCCCCCCCCC-------CCCChHHHHHH
Q 004132 455 TEGPQ----QMIQVVLNNATVETDNPDLRDRAYIYWRLLST-DPEAAKDVVLAEKPVISDDS-------NQLDPSLLDEL 522 (772)
Q Consensus 455 ~~~~~----~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~-~~~~~~~ivl~~~p~~~~~~-------~~~~~~~l~~l 522 (772)
.. .. +..+.+++.|+....++|+||||.+||++++. .++.+..++++++|...... ....+++++.|
T Consensus 523 ~~-~~~~~~~~d~~v~~~~~~~v~~~DlRDra~my~~~lst~~~~~s~~i~~e~~~s~~~~~~i~~~~~~~~t~~~l~nl 601 (757)
T COG5096 523 RK-AKQCNSELDQDVLRRCFDYVLVPDLRDRARMYSRLLSTPLPEFSDPILCEAKKSNSQFEIILSALLTNQTPELLENL 601 (757)
T ss_pred Hh-hhhccchhccHHHHHHHhccCChhHHHHHHHHHHHhcCCCccccchhhhcccccccchhhhhhhhccccCHHHHHhh
Confidence 64 33 36668999999888999999999999999984 46778888988876554321 23345666665
Q ss_pred HHhc--CcccccccCCchhhhccc
Q 004132 523 LANI--ATLSSVYHKPPEAFVTRV 544 (772)
Q Consensus 523 ~~~~--~tl~~vy~kp~~~~~~~~ 544 (772)
...+ |++.++|++|+..+.++.
T Consensus 602 ~~~~t~~~l~~~~~~~~~~l~~~~ 625 (757)
T COG5096 602 RLDFTLGTLSTIPLKPIFNLRKGA 625 (757)
T ss_pred hccccccceeccCCCCcccCCCCc
Confidence 5555 999999999998766553
No 8
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-53 Score=464.82 Aligned_cols=478 Identities=19% Similarity=0.340 Sum_probs=408.8
Q ss_pred CCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHH
Q 004132 3 VGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL 82 (772)
Q Consensus 3 ~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l 82 (772)
+|+|+||.-++++..|++..+..||+||++..+-++..+|...|++|+++||++++|.+-.|+||..|+|+.+|++++.+
T Consensus 66 lg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDL 145 (877)
T KOG1059|consen 66 LGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDL 145 (877)
T ss_pred HcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHH
Q 004132 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (772)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~ 162 (772)
.++|..+|+++.|||||+|+..++|+|.++||.+.. -+++|+.-|.|.||+|+++||..++|+...+|.+.+.+.+ .
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~--~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP-~ 222 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP--CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAP-L 222 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh--hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccH-H
Confidence 999999999999999999999999999999999986 6799999999999999999999999999999988777764 5
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCH-HHHHHHHHHHHHh--hhhcC-ChHHHHHH
Q 004132 163 LSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANC-AVVLSAVKMILQQ--MELIT-STDVVRNL 238 (772)
Q Consensus 163 ~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~-aVv~eaik~i~~~--~~~i~-~~~~~~~l 238 (772)
+.+|+.. ..+.|.-++|+++++.+.|-.++....+++.+..++.+..+ +++||||++++.- +.-.+ +...++
T Consensus 223 ffklltt--SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq-- 298 (877)
T KOG1059|consen 223 FYKLLVT--SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ-- 298 (877)
T ss_pred HHHHHhc--cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--
Confidence 7777764 57899999999999999999999999999999988876654 8999999999863 11011 222222
Q ss_pred HHhcccchhhcc-CCchhHHHHHHHHHHHHHhhChhhhhhhcc-eeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHH
Q 004132 239 CKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF 316 (772)
Q Consensus 239 ~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~~~~~~~~-if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL 316 (772)
-++..|..++ .+|+|++|++|-++..|...||..++.|.. ++.|+.|.|.+||.||||+|+.|++++|+.+|++.|
T Consensus 299 --LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~L 376 (877)
T KOG1059|consen 299 --LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTL 376 (877)
T ss_pred --HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 2445566677 589999999999999999999999999977 578999999999999999999999999999999999
Q ss_pred HHhhhhccH-HHHHHHHHH-HHHHHHh---hhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 004132 317 KEYATEVDV-DFVRKAVRA-IGRCAIK---LERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLC 391 (772)
Q Consensus 317 ~~y~~~~d~-~~~~~~v~a-Ig~la~k---~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~ 391 (772)
+.|+...+. .|+.+++.. |+.|+.. +-.+++||+.++++|....|..-...+...+.|+.-+.|..|...+..+.
T Consensus 377 M~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~ 456 (877)
T KOG1059|consen 377 MKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMS 456 (877)
T ss_pred HHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHH
Confidence 999987776 899888866 4556542 35688999999999999988776777778999999999999999998888
Q ss_pred HhcccC----------ChHHHHHHHHHHHhhhccccCCHHHHHHHHhhh-CCCCCHHHHHHHHHHHHHHhhcCCCC----
Q 004132 392 ESLDTL----------DEPEAKASMIWIIGEYAERIDNADELLESFLES-FPEEPAQVQLQLLTATVKLFLKKPTE---- 456 (772)
Q Consensus 392 ~~l~~~----------~~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~-f~~e~~~vq~~lLta~~Kl~~~~p~~---- 456 (772)
..+++- .-+++..+++||+|||++++.|+.++|+.+++. +...+..+|...+.+++|+|...-.+
T Consensus 457 ~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~ 536 (877)
T KOG1059|consen 457 ALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPNDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEET 536 (877)
T ss_pred HHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHHHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 777631 235678899999999999999999999999975 44678999999999999999864211
Q ss_pred ----ChHHHHHHH---HHhhhcCCCChHHHhhHHHHHHHhc
Q 004132 457 ----GPQQMIQVV---LNNATVETDNPDLRDRAYIYWRLLS 490 (772)
Q Consensus 457 ----~~~~~v~~v---l~~~~~~s~~~dvrdRA~~y~~Ll~ 490 (772)
+...++..+ |.. ...+.|.|||.||.+...+++
T Consensus 537 ~~~e~~~sL~~~i~~~l~q-f~~s~d~EvQERA~~~~~li~ 576 (877)
T KOG1059|consen 537 KDFEGIVSLVNLILSFLEQ-FSGSSDLEVQERASEVLELIR 576 (877)
T ss_pred cchhHHHHHHHHHHHHhhc-ccCccchhHHHHHHHHHHHHH
Confidence 112222333 332 235789999999666655554
No 9
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-41 Score=368.62 Aligned_cols=400 Identities=23% Similarity=0.418 Sum_probs=350.8
Q ss_pred CCCCCCccchhHHHHH-hhcCCCcchHHHHHHHHHHhccCCCc-----HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC
Q 004132 1 MTVGKDVSSLFTDVVN-CMQTENLELKKLVYLYLINYAKSQPD-----LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR 74 (772)
Q Consensus 1 mt~G~Dvs~lf~~vi~-l~~s~~~~lKrl~YL~l~~~~~~~~d-----l~lL~iNtl~kDl~~~np~iralALrtl~~I~ 74 (772)
|.-|.+++.++++|++ ++.+.|.++||+-|+|+...-+.++| .++|++|.++|||+|||++|||..||++|.++
T Consensus 48 mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLk 127 (948)
T KOG1058|consen 48 MLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLK 127 (948)
T ss_pred HHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcC
Confidence 4569999999999999 69999999999999999999988764 58999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHh-hcCCChhHHHHHHHHHHHHHhhCCC
Q 004132 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL-ISDNNPMVVANAVAALAEIEENSSR 153 (772)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~l-L~D~d~~Vv~~av~aL~eI~~~~~~ 153 (772)
.+|+.+.++|.|+.||.|.++||||.|++|+..+|+..-.++++ .-+.+... +.+.||.+..||+..|..+.+..
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pD--apeLi~~fL~~e~DpsCkRNAFi~L~~~D~Er-- 203 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPD--APELIESFLLTEQDPSCKRNAFLMLFTTDPER-- 203 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCC--hHHHHHHHHHhccCchhHHHHHHHHHhcCHHH--
Confidence 99999999999999999999999999999999999987777775 45556554 46999999999999998875432
Q ss_pred CcccccHHHHHHHHHHhhc---CChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcC
Q 004132 154 PIFEITSHTLSKLLTALNE---CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (772)
Q Consensus 154 ~~~~l~~~~~~~Ll~~L~~---~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~ 230 (772)
.+.+|...+.+ .++-+|..|++++..-+..++.+....++.+..+|++.+++|+|||+-++..+. .
T Consensus 204 --------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS---~ 272 (948)
T KOG1058|consen 204 --------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS---N 272 (948)
T ss_pred --------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc---C
Confidence 46777776654 456689999999999888888888899999999999999999999999887653 3
Q ss_pred ChHHHHHHHHhcccchhhccC--CchhHHHHHHHHHHHHHhhChhhhhhhc-ceeeeccCCcHhHHHHHHHHHHHhcccc
Q 004132 231 STDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTILAHEI-KVFFCKYNDPIYVKMEKLEIMIKLASDR 307 (772)
Q Consensus 231 ~~~~~~~l~~~~~~~L~~Lls--~~~~iryvaL~~l~~i~~~~p~~~~~~~-~if~~~~~d~~~Ik~~kL~lL~~L~n~~ 307 (772)
+|.+++. ++..++.|+- ++.|++.+.|.-|..+...+..+++..+ .++..+...|..||+++|++.+.|++..
T Consensus 273 ~p~alk~----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 273 DPTALKA----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred CHHHHHH----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc
Confidence 6766654 5556677773 6889999999999999988888888775 4667888889999999999999999999
Q ss_pred cHHHHHHHHHH-hhhhc------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCc
Q 004132 308 NIDQVLLEFKE-YATEV------DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP 380 (772)
Q Consensus 308 Nv~~Il~EL~~-y~~~~------d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p 380 (772)
|+++|+.-|+. +.... ...||+.++++|..||.+|+..+...|..+++++...+..-...++..++..+.++|
T Consensus 349 Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 349 NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 99999998874 43322 246899999999999999999999999999999999988888899999999999999
Q ss_pred ccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccCC
Q 004132 381 NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN 419 (772)
Q Consensus 381 ~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~ 419 (772)
+++..++.+|.+.+..+..+++...++||+|||++-..+
T Consensus 429 ~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~ 467 (948)
T KOG1058|consen 429 NLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSE 467 (948)
T ss_pred hHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHH
Confidence 999999999999998888888889999999999976543
No 10
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-36 Score=337.77 Aligned_cols=466 Identities=18% Similarity=0.307 Sum_probs=398.9
Q ss_pred CCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHH
Q 004132 5 KDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCD 84 (772)
Q Consensus 5 ~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~ 84 (772)
.++..+|+.+.|++|++|..+||++|+++..++....| .+++++++.||.+..++.+|+.|||+||+|....|......
T Consensus 60 ~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised-viivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~ier 138 (865)
T KOG1078|consen 60 TEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED-VIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIER 138 (865)
T ss_pred hhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh-hhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHH
Confidence 35678999999999999999999999999999988877 68899999999999999999999999999999999999999
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHH
Q 004132 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLS 164 (772)
Q Consensus 85 ~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~ 164 (772)
.+++++.|++|.|+..|...-++++..+.+.+.. |...+.....+.|.+|+++|+..|+.|.+++.- .+.
T Consensus 139 y~kqaivd~~~avSsaalvss~hll~~~~~~vkr--w~neiqea~~s~~~m~QyHalglLyqirk~drl--------a~s 208 (865)
T KOG1078|consen 139 YMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKR--WANEVQEAVNSDNIMVQYHALGLLYQIRKNDRL--------AVS 208 (865)
T ss_pred HHHhHeeccccccchHHHHHHhhhhcccHHHHHH--HHHhhhhccCcHHHHHHHHHHHHHHHHHhhhHH--------HHH
Confidence 9999999999999999999999999999999986 999999999999999999999999999876531 355
Q ss_pred HHHHHhhc---CChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHh
Q 004132 165 KLLTALNE---CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKK 241 (772)
Q Consensus 165 ~Ll~~L~~---~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~ 241 (772)
+++..+.. .+++.++.+++.-.....++..-...+.+.+..+++|....|.+||++.+..+.. ....... .
T Consensus 209 klv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~-~~~r~l~-----p 282 (865)
T KOG1078|consen 209 KLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPN-TNSRELA-----P 282 (865)
T ss_pred HHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccc-cCHhhcc-----h
Confidence 66655532 5788888888888776554433333456667788999999999999999987532 1111111 1
Q ss_pred cccchhhccC-CchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCC-cHhHHHHHHHHHHHhcccccHHHHHHHHHHh
Q 004132 242 MAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYND-PIYVKMEKLEIMIKLASDRNIDQVLLEFKEY 319 (772)
Q Consensus 242 ~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d-~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y 319 (772)
....|..+++ ..+-+||.|+|+|++++..+|..+...-.-+.-+-+| ..+|...|+-.|++-++++|++.+++.+-.|
T Consensus 283 avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~f 362 (865)
T KOG1078|consen 283 AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSF 362 (865)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3334555664 5789999999999999999998764332222222233 4789999999999999999999999999999
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchh-HHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCC
Q 004132 320 ATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYV-VQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD 398 (772)
Q Consensus 320 ~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v-~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~ 398 (772)
+.+.+++|+.-.|.+|..++.+||.....+++.|-++|+..|.+- ....+.++.+++..+|+..+..+..||++++++.
T Consensus 363 v~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce 442 (865)
T KOG1078|consen 363 VSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE 442 (865)
T ss_pred HHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc
Confidence 999999999999999999999999988899999999999888653 4456678999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHH
Q 004132 399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478 (772)
Q Consensus 399 ~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dv 478 (772)
.++.-.-+..++|+-|....++..+++.++++...|+..||+..++|+.|+....+. .++.|..+++.|..| .|-+|
T Consensus 443 ~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~--l~~sI~vllkRc~~D-~Ddev 519 (865)
T KOG1078|consen 443 FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV--LLPSILVLLKRCLND-SDDEV 519 (865)
T ss_pred chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC--ccccHHHHHHHHhcC-chHHH
Confidence 888877899999999999999999999999999999999999999999999976664 778899999999876 67799
Q ss_pred HhhHHHHHHHhc
Q 004132 479 RDRAYIYWRLLS 490 (772)
Q Consensus 479 rdRA~~y~~Ll~ 490 (772)
||||.+|.+.+.
T Consensus 520 RdrAtf~l~~l~ 531 (865)
T KOG1078|consen 520 RDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHHHhh
Confidence 999999999887
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=3e-34 Score=308.11 Aligned_cols=468 Identities=15% Similarity=0.214 Sum_probs=390.3
Q ss_pred CccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCH-HHHhHHHHHhcCCChhhhHHHHHH
Q 004132 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP-LIRALAVRTMGCIRVDKITEYLCD 84 (772)
Q Consensus 6 Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np-~iralALrtl~~I~~~ei~~~l~~ 84 (772)
.+..+|+.+.|++|++|..+|..+|+++..+..-..| .+|++|++.||++..-| .+|..|+|+|-++...+++.....
T Consensus 62 ~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~ted-vlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er 140 (898)
T COG5240 62 TATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTED-VLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFER 140 (898)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchh-hhHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHH
Confidence 3567999999999999999999999999999998777 68999999999999877 999999999999999999999999
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhc----------------CCChhHHHHHHHHHHHHH
Q 004132 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS----------------DNNPMVVANAVAALAEIE 148 (772)
Q Consensus 85 ~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~----------------D~d~~Vv~~av~aL~eI~ 148 (772)
.+..+..|+++-+|..|....++++..+-..+.. |....++..- ..++.-..+|+..|+++.
T Consensus 141 ~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~r--w~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~k 218 (898)
T COG5240 141 YLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKR--WLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSK 218 (898)
T ss_pred HhhhhccccchhhhhhHHHHhhhhccccHHHHHH--HHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999877766664 7765554432 246777899999999987
Q ss_pred hhCCCCcccccHHHHHHHHHHhhc----CChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHH
Q 004132 149 ENSSRPIFEITSHTLSKLLTALNE----CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQ 224 (772)
Q Consensus 149 ~~~~~~~~~l~~~~~~~Ll~~L~~----~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~ 224 (772)
.++.- ...+|+..+.. .+...-+.++|+......++++....+-..+...|++...+|-+|++|.+..
T Consensus 219 r~dkm--------a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~ 290 (898)
T COG5240 219 RTDKM--------AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCA 290 (898)
T ss_pred cccHH--------HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 65531 23445554433 3455666777777766666665555555566677888889999999999987
Q ss_pred hhh-hcCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhhhhcceeeec-cCCcHhHHHHHHHHHH
Q 004132 225 QME-LITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCK-YNDPIYVKMEKLEIMI 301 (772)
Q Consensus 225 ~~~-~i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~-~~d~~~Ik~~kL~lL~ 301 (772)
+.. ++ .++.+. ..+..|.++|+ ...-.||.|+|.|+.|+.++|+.+.-.-+-+..+ .+....|..-|+.-|+
T Consensus 291 ~~~~nv-~~~~~~----~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLL 365 (898)
T COG5240 291 LSEENV-GSQFVD----QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLL 365 (898)
T ss_pred HHHhcc-CHHHHH----HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHH
Confidence 542 22 233333 35566778885 5778999999999999999998654322222222 3445779999999999
Q ss_pred HhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHhCc
Q 004132 302 KLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVV-QEAIIVIKDIFRRYP 380 (772)
Q Consensus 302 ~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~-~e~i~~l~~i~~~~p 380 (772)
+-++++|+..+++.+..|+.+.++.|+.-+|.++..++.+||.....++++|.+.|..+|.+-. ..++.++.+++...|
T Consensus 366 KTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p 445 (898)
T COG5240 366 KTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDP 445 (898)
T ss_pred HcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999999999999999999999998887744 456679999999999
Q ss_pred ccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHH
Q 004132 381 NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQ 460 (772)
Q Consensus 381 ~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~ 460 (772)
+..+.+++.||+++++++.++....+..|+|+-|..-.+|..+++.++++...|+..||.+++.|+.|+++...+.-.++
T Consensus 446 ~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~ 525 (898)
T COG5240 446 DSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQ 525 (898)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHH
Confidence 99999999999999999999998889999999999999999999999999999999999999999999998765543678
Q ss_pred HHHHHHHhhhcCCCChHHHhhHHHHHHHhc
Q 004132 461 MIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (772)
Q Consensus 461 ~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~ 490 (772)
.+..+|+.|.+| .|-||||||-+..+-+.
T Consensus 526 sv~~~lkRclnD-~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 526 SVENALKRCLND-QDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHhhc-ccHHHHHHHHHHHHhhh
Confidence 899999999876 78899999999999887
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.45 E-value=1.2e-11 Score=143.79 Aligned_cols=409 Identities=17% Similarity=0.193 Sum_probs=253.9
Q ss_pred HhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHH-HHHHHHhhhCC
Q 004132 16 NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEY-LCDPLQRCLKD 92 (772)
Q Consensus 16 ~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~--~~ei~~~-l~~~v~~~L~d 92 (772)
+-+.++|...+-++-=.++++. .+|++--+.+.+.+-+.|++|+||.-|+-++..+- .|+.++. +.+.+.+++.|
T Consensus 86 kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d 163 (526)
T PF01602_consen 86 KDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSD 163 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTH
T ss_pred HhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccC
Confidence 3566777776666666666665 67777777888888888888888888888887774 5677766 68888888888
Q ss_pred CChHHHHHHHHHHHHHHhhccc----cccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHH
Q 004132 93 DDPYVRKTAAICVAKLYDINAE----LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLT 168 (772)
Q Consensus 93 ~~pyVRK~Aa~~l~kl~~~~p~----~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~ 168 (772)
++|-|+..|+.++..+ +.+|+ ++. .+...|.+++.+.+|.++..++..+..+....+..... ...+..+..
T Consensus 164 ~~~~V~~~a~~~l~~i-~~~~~~~~~~~~--~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~ 238 (526)
T PF01602_consen 164 KDPSVVSAALSLLSEI-KCNDDSYKSLIP--KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLN 238 (526)
T ss_dssp SSHHHHHHHHHHHHHH-HCTHHHHTTHHH--HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHH
T ss_pred CcchhHHHHHHHHHHH-ccCcchhhhhHH--HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHH
Confidence 8888888888777777 33333 233 47788888888888888888888888777655321100 234555555
Q ss_pred HhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhh
Q 004132 169 ALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVT 248 (772)
Q Consensus 169 ~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~ 248 (772)
.+...++-......+++..+.+. ......+++.+..++.+.++.+.+-+++.+..+... .+..+.. ....+..
T Consensus 239 ~l~s~~~~V~~e~~~~i~~l~~~-~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~--~~~~v~~----~~~~~~~ 311 (526)
T PF01602_consen 239 LLQSSSPSVVYEAIRLIIKLSPS-PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS--NPPAVFN----QSLILFF 311 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH--CHHHHGT----HHHHHHH
T ss_pred HhhccccHHHHHHHHHHHHhhcc-hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc--cchhhhh----hhhhhhe
Confidence 55555555556666666665543 335667777778888877777888888777765422 2222211 1111123
Q ss_pred cc-CCchhHHHHHHHHHHHHHhhCh--hhhhhhcceeeeccCCcHhHHHHHHHHHHHhcc--cccHHHHHHHHHHhhhhc
Q 004132 249 LL-SAEPEIQYVALRNINLIVQRRP--TILAHEIKVFFCKYNDPIYVKMEKLEIMIKLAS--DRNIDQVLLEFKEYATEV 323 (772)
Q Consensus 249 Ll-s~~~~iryvaL~~l~~i~~~~p--~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n--~~Nv~~Il~EL~~y~~~~ 323 (772)
+. +.++.+|..+|+.+..++.... .++..-.+ ++...++..+|...+..+..++. ..+.+..++-|.+.+...
T Consensus 312 l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~--~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~ 389 (526)
T PF01602_consen 312 LLYDDDPSIRKKALDLLYKLANESNVKEILDELLK--YLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEIS 389 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHH--HHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCT
T ss_pred ecCCCChhHHHHHHHHHhhcccccchhhHHHHHHH--HHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhc
Confidence 33 4567788888888877775432 22221111 11233355677777777777663 455677777777777766
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhCcc--cHHHHHHHHHHhcccCChH
Q 004132 324 DVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK-VNYVVQEAIIVIKDIFRRYPN--TYESIIATLCESLDTLDEP 400 (772)
Q Consensus 324 d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~-~~~v~~e~i~~l~~i~~~~p~--~~~~ii~~L~~~l~~~~~p 400 (772)
+..+..+++..|..+..+.+...++.+..+.+.+... ...+...++-.+.+.....++ ....++..+.+.+.. ..+
T Consensus 390 ~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~-~~~ 468 (526)
T PF01602_consen 390 GDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIE-ESP 468 (526)
T ss_dssp GGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTT-SHH
T ss_pred cccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhcc-ccH
Confidence 6667777777777777777777777788888777753 334555555566666555554 445556666665533 345
Q ss_pred HHHHHHHHHHhhhccccC--CH-HHHHHHHhhhCC--CCCHHHHHH
Q 004132 401 EAKASMIWIIGEYAERID--NA-DELLESFLESFP--EEPAQVQLQ 441 (772)
Q Consensus 401 ~a~~~~iwilGEy~~~i~--~~-~~~L~~l~~~f~--~e~~~vq~~ 441 (772)
+++..++-.+.+.....+ .. +.+++.+..-.. +.+++||.-
T Consensus 469 ~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~R 514 (526)
T PF01602_consen 469 EVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDR 514 (526)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 566666666666554443 22 344444443222 457777653
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.31 E-value=2.1e-10 Score=141.07 Aligned_cols=271 Identities=18% Similarity=0.150 Sum_probs=148.4
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHH
Q 004132 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (772)
Q Consensus 48 iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~ 127 (772)
++.|..-|.|++|.||..|+..|+.+..++..+. |.++|.|+++.||..|+.++.++....+. .+.|..
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~----L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L~~ 691 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFGPA----LVAALGDGAAAVRRAAAEGLRELVEVLPP-------APALRD 691 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHH----HHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHHHHH
Confidence 3556666677777777777777777766554443 55666777777777777777666322111 245556
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhh
Q 004132 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL 207 (772)
Q Consensus 128 lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L 207 (772)
+|.|.|+.|...|+.+|..+...+ ...|+..|.+.+++.+...++.|...... +.+...+
T Consensus 692 ~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~---------~~l~~~l 751 (897)
T PRK13800 692 HLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDDV---------ESVAGAA 751 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccCc---------HHHHHHh
Confidence 666677777777776666553211 12344556667777777666666654321 2234556
Q ss_pred cCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhhhhcceeeecc
Q 004132 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKY 286 (772)
Q Consensus 208 ~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~ 286 (772)
.+.++.|..++++.+..+. +... ...+.|..++. .++++|..+++.|..+.... ..... +...+.
T Consensus 752 ~D~~~~VR~~aa~aL~~~~----~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~-~~~~~---l~~aL~ 817 (897)
T PRK13800 752 TDENREVRIAVAKGLATLG----AGGA------PAGDAVRALTGDPDPLVRAAALAALAELGCPP-DDVAA---ATAALR 817 (897)
T ss_pred cCCCHHHHHHHHHHHHHhc----cccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-hhHHH---HHHHhc
Confidence 6667777777777666532 1110 01122344553 46667777776666653221 11110 112234
Q ss_pred CCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHH
Q 004132 287 NDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQ 366 (772)
Q Consensus 287 ~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~ 366 (772)
+++..||..+++.|..+.+++-+ .-|...+.+.+..+|+.++++++.+. . .....+.|...++.....|..
T Consensus 818 d~d~~VR~~Aa~aL~~l~~~~a~----~~L~~~L~D~~~~VR~~A~~aL~~~~--~---~~~a~~~L~~al~D~d~~Vr~ 888 (897)
T PRK13800 818 ASAWQVRQGAARALAGAAADVAV----PALVEALTDPHLDVRKAAVLALTRWP--G---DPAARDALTTALTDSDADVRA 888 (897)
T ss_pred CCChHHHHHHHHHHHhccccchH----HHHHHHhcCCCHHHHHHHHHHHhccC--C---CHHHHHHHHHHHhCCCHHHHH
Confidence 55566777777776666554433 33334445666666666666666641 1 122344455555555555555
Q ss_pred HHHHHH
Q 004132 367 EAIIVI 372 (772)
Q Consensus 367 e~i~~l 372 (772)
+++..+
T Consensus 889 ~A~~aL 894 (897)
T PRK13800 889 YARRAL 894 (897)
T ss_pred HHHHHH
Confidence 555443
No 14
>PRK09687 putative lyase; Provisional
Probab=99.25 E-value=3.5e-10 Score=120.28 Aligned_cols=251 Identities=17% Similarity=0.167 Sum_probs=155.8
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~ 126 (772)
.++.|.+-|.|+|..+|..|+..|+.++.+++.+. +.+++.|.++.||+.|+.+++.+-. ++.. ....++.|.
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~--~~~~-~~~a~~~L~ 96 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRL----AIELCSSKNPIERDIGADILSQLGM--AKRC-QDNVFNILN 96 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHH----HHHHHhCCCHHHHHHHHHHHHhcCC--Cccc-hHHHHHHHH
Confidence 34566778899999999999999999998777766 6778999999999999999999853 2211 112567777
Q ss_pred Hh-hcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhH
Q 004132 127 DL-ISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP 205 (772)
Q Consensus 127 ~l-L~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~ 205 (772)
.+ ++|+++.|..+|+.+|..++..... + ... .++.+..
T Consensus 97 ~l~~~D~d~~VR~~A~~aLG~~~~~~~~--~--~~~-------------------------------------a~~~l~~ 135 (280)
T PRK09687 97 NLALEDKSACVRASAINATGHRCKKNPL--Y--SPK-------------------------------------IVEQSQI 135 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccccccc--c--chH-------------------------------------HHHHHHH
Confidence 76 7899999999999999887543210 0 111 1222333
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhhhhcceeee
Q 004132 206 RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFC 284 (772)
Q Consensus 206 ~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~ 284 (772)
.+.+.++-|.+.++..+.. +.+++.+ +.|+.++. +++.+|+.+...|..+....|..+..- +..
T Consensus 136 ~~~D~~~~VR~~a~~aLg~----~~~~~ai--------~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L---~~~ 200 (280)
T PRK09687 136 TAFDKSTNVRFAVAFALSV----INDEAAI--------PLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAF---VAM 200 (280)
T ss_pred HhhCCCHHHHHHHHHHHhc----cCCHHHH--------HHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHH---HHH
Confidence 4445556666666666653 2334322 23444453 456666666666666632233333221 112
Q ss_pred ccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-hccch
Q 004132 285 KYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK-IKVNY 363 (772)
Q Consensus 285 ~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~-~~~~~ 363 (772)
+.+++..||..++..|.++.++.-+..+++. +.+.+ ++..++.++|.++.+ ..+..|.+++. ....+
T Consensus 201 L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~----L~~~~--~~~~a~~ALg~ig~~------~a~p~L~~l~~~~~d~~ 268 (280)
T PRK09687 201 LQDKNEEIRIEAIIGLALRKDKRVLSVLIKE----LKKGT--VGDLIIEAAGELGDK------TLLPVLDTLLYKFDDNE 268 (280)
T ss_pred hcCCChHHHHHHHHHHHccCChhHHHHHHHH----HcCCc--hHHHHHHHHHhcCCH------hHHHHHHHHHhhCCChh
Confidence 3455677788888777777776554444444 33322 556677777776652 35566666664 44445
Q ss_pred hHHHHHHHH
Q 004132 364 VVQEAIIVI 372 (772)
Q Consensus 364 v~~e~i~~l 372 (772)
|...++..+
T Consensus 269 v~~~a~~a~ 277 (280)
T PRK09687 269 IITKAIDKL 277 (280)
T ss_pred HHHHHHHHH
Confidence 554444433
No 15
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.24 E-value=2.5e-09 Score=131.64 Aligned_cols=257 Identities=19% Similarity=0.185 Sum_probs=170.4
Q ss_pred CHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHH
Q 004132 59 NPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (772)
Q Consensus 59 np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~ 138 (772)
-+..|-+|+.+|.. + ..+.+.+.|.|++|.||+.|+.++.++. .+ ..++.|..+|+|.|+.|..
T Consensus 607 ~~~~~~~~~~~l~~---~-----~~~~L~~~L~D~d~~VR~~Av~~L~~~~--~~------~~~~~L~~aL~D~d~~VR~ 670 (897)
T PRK13800 607 PPSPRILAVLALDA---P-----SVAELAPYLADPDPGVRRTAVAVLTETT--PP------GFGPALVAALGDGAAAVRR 670 (897)
T ss_pred CchHHHHHHHhccc---h-----hHHHHHHHhcCCCHHHHHHHHHHHhhhc--ch------hHHHHHHHHHcCCCHHHHH
Confidence 34555677777722 2 2335777889999999999999999875 22 3578889999999999999
Q ss_pred HHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHH
Q 004132 139 NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA 218 (772)
Q Consensus 139 ~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~ea 218 (772)
.|+.+|.++.+..+. ...|...|.+.+++.+..+++.|......+. ..+...|++.++.|..+|
T Consensus 671 ~Aa~aL~~l~~~~~~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~d~~VR~~A 734 (897)
T PRK13800 671 AAAEGLRELVEVLPP---------APALRDHLGSPDPVVRAAALDVLRALRAGDA-------ALFAAALGDPDHRVRIEA 734 (897)
T ss_pred HHHHHHHHHHhccCc---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCCCHHHHHHH
Confidence 999999988643221 2345566677899999999999987654332 244567889999999999
Q ss_pred HHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHH
Q 004132 219 VKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKL 297 (772)
Q Consensus 219 ik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL 297 (772)
++.+..+ ...+ .|..++ ..++++|..+.+.|..+....+..+.. ....+.|++..||..++
T Consensus 735 v~aL~~~----~~~~-----------~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~---L~~ll~D~d~~VR~aA~ 796 (897)
T PRK13800 735 VRALVSV----DDVE-----------SVAGAATDENREVRIAVAKGLATLGAGGAPAGDA---VRALTGDPDPLVRAAAL 796 (897)
T ss_pred HHHHhcc----cCcH-----------HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHH---HHHHhcCCCHHHHHHHH
Confidence 9998753 2222 123445 467888888888888876554422111 11233456677888888
Q ss_pred HHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 004132 298 EIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKD 374 (772)
Q Consensus 298 ~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~ 374 (772)
..|-.+.++..+ ...|...+.+.|..+|..++.+++.+.. +..++.|+.+++.....|+.+++..+..
T Consensus 797 ~aLg~~g~~~~~---~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 797 AALAELGCPPDD---VAAATAALRASAWQVRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHhcCCcchh---HHHHHHHhcCCChHHHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 888887765432 2334455666777777777777776542 2244555555555444455544444443
No 16
>PTZ00429 beta-adaptin; Provisional
Probab=99.20 E-value=2.7e-08 Score=117.95 Aligned_cols=403 Identities=13% Similarity=0.118 Sum_probs=185.1
Q ss_pred hcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcC
Q 004132 54 DSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD 131 (772)
Q Consensus 54 Dl~~~np~iralALrtl~~I~--~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D 131 (772)
-+.++|..+|-+.--.+..+. .++.+--.+..+++-+.|+||+||--|+-++.++- .|++++. +...++++|.|
T Consensus 76 ~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir--~~~i~e~--l~~~lkk~L~D 151 (746)
T PTZ00429 76 LAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR--VSSVLEY--TLEPLRRAVAD 151 (746)
T ss_pred HhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--cHHHHHH--HHHHHHHHhcC
Confidence 334455555544433333322 24444445555555555566666655555555543 3444443 44555555556
Q ss_pred CChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHH---HHHHhHhhc
Q 004132 132 NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI---VERVTPRLQ 208 (772)
Q Consensus 132 ~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~i---l~~v~~~L~ 208 (772)
++|.|+.+|+.++..+...++. .+. ....+.+|...|.+.++-.+...+.+|......++...... +.++...+.
T Consensus 152 ~~pYVRKtAalai~Kly~~~pe-lv~-~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~ 229 (746)
T PTZ00429 152 PDPYVRKTAAMGLGKLFHDDMQ-LFY-QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLP 229 (746)
T ss_pred CCHHHHHHHHHHHHHHHhhCcc-ccc-ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhh
Confidence 6666655555555555443331 110 11223333344445555555555555544433332221111 111222223
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhh-Chhhhhhhc----c-e
Q 004132 209 HANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQR-RPTILAHEI----K-V 281 (772)
Q Consensus 209 ~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~-~p~~~~~~~----~-i 281 (772)
..+.=-....++++..+.+ .+.+....++. .+...+ ++++-+.+-+.+.+..+... .|+++..-. . .
T Consensus 230 e~~EW~Qi~IL~lL~~y~P--~~~~e~~~il~----~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pL 303 (746)
T PTZ00429 230 ECNEWGQLYILELLAAQRP--SDKESAETLLT----RVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTAL 303 (746)
T ss_pred cCChHHHHHHHHHHHhcCC--CCcHHHHHHHH----HHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHH
Confidence 3333333333333333211 11222222222 122223 34455555555555544432 123222211 1 1
Q ss_pred eeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHH-hhhhccHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 004132 282 FFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE-YATEVDVD-FVRKAVRAIGRCAIKLERAAERCISVLLELIKI 359 (772)
Q Consensus 282 f~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~-y~~~~d~~-~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~ 359 (772)
++.. +.++.+|-.+|+-+..++... -..+..++.. |....|+. ++.+.+.-+..++. +...+..++-|.+....
T Consensus 304 v~L~-ss~~eiqyvaLr~I~~i~~~~-P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lan--e~Nv~~IL~EL~eYa~d 379 (746)
T PTZ00429 304 LTLS-RRDAETQYIVCKNIHALLVIF-PNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVT--PSVAPEILKELAEYASG 379 (746)
T ss_pred HHhh-CCCccHHHHHHHHHHHHHHHC-HHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcC--cccHHHHHHHHHHHhhc
Confidence 2222 223345555554444333321 1222223322 23333333 33444444444443 23344555555555555
Q ss_pred ccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCCh--HHHHHHHHHHHhhhccccCCHHHHHHHHhhhC---CCC
Q 004132 360 KVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDE--PEAKASMIWIIGEYAERIDNADELLESFLESF---PEE 434 (772)
Q Consensus 360 ~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~--p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f---~~e 434 (772)
....++.++|..+..+..++|...+.++..|++.++.-.+ .++..++--++-.|.+. .++..+++.+ .-.
T Consensus 380 ~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~-----~il~~L~~~~~~~~i~ 454 (746)
T PTZ00429 380 VDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPEL-----LMLDTLVTDYGADEVV 454 (746)
T ss_pred CCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccH-----HHHHHHHHhhcccccc
Confidence 5556777788888888888888888888888877754111 12222333444444432 3455565544 224
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhh
Q 004132 435 PAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDR 481 (772)
Q Consensus 435 ~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdR 481 (772)
+++.|..++=.+..+....+. ..+.+..+++... ..+++||--
T Consensus 455 e~~AKaaiiWILGEy~~~I~~--a~~~L~~~i~~f~--~E~~~Vqlq 497 (746)
T PTZ00429 455 EEEAKVSLLWMLGEYCDFIEN--GKDIIQRFIDTIM--EHEQRVQLA 497 (746)
T ss_pred cHHHHHHHHHHHHhhHhhHhh--HHHHHHHHHhhhc--cCCHHHHHH
Confidence 677777777777776554442 5666666665432 356777543
No 17
>PRK09687 putative lyase; Provisional
Probab=99.17 E-value=7.3e-09 Score=110.21 Aligned_cols=189 Identities=16% Similarity=0.131 Sum_probs=142.5
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhh-HHHHHHHHHhh-hC
Q 004132 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI-TEYLCDPLQRC-LK 91 (772)
Q Consensus 14 vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei-~~~l~~~v~~~-L~ 91 (772)
.++++.++|...|.-+--.+..+. .++.. ..+.+-++|+|+.+|..|++.||.++.+.- .+...+.+..+ +.
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~--~~~~~----~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~ 101 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRG--GQDVF----RLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE 101 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcC--cchHH----HHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc
Confidence 456778888887777666666553 23333 334555789999999999999999986442 23445556655 78
Q ss_pred CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhh
Q 004132 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN 171 (772)
Q Consensus 92 d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~ 171 (772)
|+++.||+.|+.+++++....+... ...++.+..++.|.|+.|...|+.+|.++.. ...+..|+..|.
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~~~--~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~ 169 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPLYS--PKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLLK 169 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccccc--hHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhc
Confidence 9999999999999999854332221 2367788888999999999999999977642 235788888888
Q ss_pred cCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHH
Q 004132 172 ECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQ 224 (772)
Q Consensus 172 ~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~ 224 (772)
+.++|.+......|......++ .+.+.+...|++.|..|..+|+..+..
T Consensus 170 d~~~~VR~~A~~aLg~~~~~~~----~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 170 DPNGDVRNWAAFALNSNKYDNP----DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred CCCHHHHHHHHHHHhcCCCCCH----HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 9999999999999998743333 455667778899999999999999876
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.14 E-value=1.9e-07 Score=118.76 Aligned_cols=293 Identities=12% Similarity=0.111 Sum_probs=194.6
Q ss_pred HHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHH-hcccchhhccC-CchhHHHHHHHHHHHHHhhChh---h
Q 004132 200 VERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT---I 274 (772)
Q Consensus 200 l~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~-~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~---~ 274 (772)
+..+..++...+.-+.-.++.++.++... +.+..+.+.. ..+++|+.+|+ .++++|..+++.|..|+...++ .
T Consensus 406 ik~LV~LL~~~~~evQ~~Av~aL~~L~~~--~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~a 483 (2102)
T PLN03200 406 KKVLVGLITMATADVQEELIRALSSLCCG--KGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWA 483 (2102)
T ss_pred hhhhhhhhccCCHHHHHHHHHHHHHHhCC--CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44566778888889999999998776431 3444444433 35677888885 6789999999999999865542 1
Q ss_pred hhhh--cc-eeeeccCCcHhHHHHHHHHHHHhcc-cccHHHHH------HHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 004132 275 LAHE--IK-VFFCKYNDPIYVKMEKLEIMIKLAS-DRNIDQVL------LEFKEYATEVDVDFVRKAVRAIGRCAIKLER 344 (772)
Q Consensus 275 ~~~~--~~-if~~~~~d~~~Ik~~kL~lL~~L~n-~~Nv~~Il------~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~ 344 (772)
+... +. .+.++.+.+..+|..+.-.|..++. ++|++.++ .-|.+.+++.+.+.++.+..+|..++....
T Consensus 484 IieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d- 562 (2102)
T PLN03200 484 ITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD- 562 (2102)
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-
Confidence 2111 22 2345566778899999999999984 55666655 346778888899999999999999976432
Q ss_pred hHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcc---c-----HHHHHHHHHHhcccCChHHHHHHHHHHHhhhccc
Q 004132 345 AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN---T-----YESIIATLCESLDTLDEPEAKASMIWIIGEYAER 416 (772)
Q Consensus 345 ~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~---~-----~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~ 416 (772)
...+..++.++...+..+...++.++..++.--.. . ....++.|.+.++. ..++.+..++|+++.|+..
T Consensus 563 --~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~s-gs~~ikk~Aa~iLsnL~a~ 639 (2102)
T PLN03200 563 --AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS-SKEETQEKAASVLADIFSS 639 (2102)
T ss_pred --hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC
Confidence 23557788888877777776677777666542111 1 12467888888875 4677888899999999753
Q ss_pred cCC-H-----HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChH-----HHHHHHHHhhhcCCCChHHHhhHHHH
Q 004132 417 IDN-A-----DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQ-----QMIQVVLNNATVETDNPDLRDRAYIY 485 (772)
Q Consensus 417 i~~-~-----~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~-----~~v~~vl~~~~~~s~~~dvrdRA~~y 485 (772)
-.+ . ...+..++..+...+.++|...-.|+..++.....+... ..+.-+++.. .+.|.++++-|..-
T Consensus 640 ~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL--~~~d~~v~e~Al~A 717 (2102)
T PLN03200 640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA--KSSSIEVAEQAVCA 717 (2102)
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH--hCCChHHHHHHHHH
Confidence 222 1 123444555556677888888888888887532211001 1244455543 24678888888887
Q ss_pred HHHhcCCHHHHHhhh
Q 004132 486 WRLLSTDPEAAKDVV 500 (772)
Q Consensus 486 ~~Ll~~~~~~~~~iv 500 (772)
...+-.+++.+.++.
T Consensus 718 LanLl~~~e~~~ei~ 732 (2102)
T PLN03200 718 LANLLSDPEVAAEAL 732 (2102)
T ss_pred HHHHHcCchHHHHHH
Confidence 666655665554444
No 19
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=99.08 E-value=2.7e-09 Score=106.05 Aligned_cols=147 Identities=27% Similarity=0.474 Sum_probs=116.0
Q ss_pred CHHHHhHHHHHhc--CCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhH
Q 004132 59 NPLIRALAVRTMG--CIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (772)
Q Consensus 59 np~iralALrtl~--~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V 136 (772)
||.||+.|+.+|| +++-+.+++...+.+.++|.|++|+|||.|+.++.++...+.-.++. .++..+..+|.|+|+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~-~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG-QLFSRILKLLVDENPEI 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh-hhhHHHHHHHcCCCHHH
Confidence 6899999999999 67899999999999999999999999999999999999876655553 33356667889999999
Q ss_pred HHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhH---------HHHHHHHHhccccCCHHHHHHHHHHHhHhh
Q 004132 137 VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWG---------QVFILDALSRYKAADAREAENIVERVTPRL 207 (772)
Q Consensus 137 v~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~---------qv~iL~~L~~~~~~~~~e~~~il~~v~~~L 207 (772)
...|...+.++.....+ ......+..++..|+.+.+|. ...|++.|-.+..+ ++..+.+++++..++
T Consensus 80 r~~A~~~~~e~~~~~~~---~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~kl~~~~ 155 (178)
T PF12717_consen 80 RSLARSFFSELLKKRNP---NIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVEKLCQRF 155 (178)
T ss_pred HHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHH
Confidence 99999999999887322 223456777888888876664 34677777776543 556677777777766
Q ss_pred cCC
Q 004132 208 QHA 210 (772)
Q Consensus 208 ~~~ 210 (772)
.+.
T Consensus 156 ~~~ 158 (178)
T PF12717_consen 156 LNA 158 (178)
T ss_pred HHH
Confidence 544
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.02 E-value=9.3e-08 Score=121.59 Aligned_cols=396 Identities=16% Similarity=0.158 Sum_probs=267.7
Q ss_pred cCCCCHHHHhHHHHHhcCCC--hhhhHHH-----HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHH
Q 004132 55 SQDPNPLIRALAVRTMGCIR--VDKITEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLES 124 (772)
Q Consensus 55 l~~~np~iralALrtl~~I~--~~ei~~~-----l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~ 124 (772)
+...+..++.-|..++.++. ..+..+. .++.+.++|.+.++-+|+.|+.++..+..-+++ .+-+.|.++.
T Consensus 413 L~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~ 492 (2102)
T PLN03200 413 ITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPP 492 (2102)
T ss_pred hccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 34566889999888887765 2343333 478899999999999999999999888765544 4445688999
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccc--cHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHH
Q 004132 125 LKDLISDNNPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVER 202 (772)
Q Consensus 125 L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l--~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~ 202 (772)
|.+||...++.+.-.|+.+|..++.++.. .-.+ ..+.+..|++.|+..++=.|...+..|..+....+. +.+..
T Consensus 493 LV~LL~s~~~~iqeeAawAL~NLa~~~~q-ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~---~~I~~ 568 (2102)
T PLN03200 493 LVQLLETGSQKAKEDSATVLWNLCCHSED-IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA---ATISQ 568 (2102)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCcHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch---hHHHH
Confidence 99999999999999999999998864321 1111 123566778888777777788888888776433221 23466
Q ss_pred HhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHH--HHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhhh--
Q 004132 203 VTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNL--CKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAH-- 277 (772)
Q Consensus 203 v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l--~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~~-- 277 (772)
+...|.+.++.+...+++++.++.......+..... ....++.|+.|+. .++++|--|...|..+...+++..+.
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv 648 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLA 648 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 667788888888888888886654422222222211 1246777888885 67889999999999998777654221
Q ss_pred --h-c-ceeeeccCCcHhHHHHHHHHHHHhc---ccccHHH-----HHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh
Q 004132 278 --E-I-KVFFCKYNDPIYVKMEKLEIMIKLA---SDRNIDQ-----VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA 345 (772)
Q Consensus 278 --~-~-~if~~~~~d~~~Ik~~kL~lL~~L~---n~~Nv~~-----Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~ 345 (772)
. + ..+..+.+....+++++--.|..+. +++|... +++-|.+.++..|.+++..+..+++.++..-+..
T Consensus 649 ~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~ 728 (2102)
T PLN03200 649 TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA 728 (2102)
T ss_pred HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH
Confidence 1 1 1334555666678988888888777 4444433 3555778888889999999999999988754322
Q ss_pred ----HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCccc--------HHHHHHHHHHhcccCC-----hHHHHHHHHH
Q 004132 346 ----AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT--------YESIIATLCESLDTLD-----EPEAKASMIW 408 (772)
Q Consensus 346 ----~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~--------~~~ii~~L~~~l~~~~-----~p~a~~~~iw 408 (772)
.+-.+..|+++++.+.+.+...+...+.++.+..|.- +..++..|++.|+..+ ..++..++.|
T Consensus 729 ~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~ 808 (2102)
T PLN03200 729 AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALAL 808 (2102)
T ss_pred HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 2345889999999998889999999999998888732 2334667777775322 2245666777
Q ss_pred HHh-hhcccc-CCH-------HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCC
Q 004132 409 IIG-EYAERI-DNA-------DELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 454 (772)
Q Consensus 409 ilG-Ey~~~i-~~~-------~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p 454 (772)
+.- .++... .++ +.-|+.++.....++|.+|--.+..+.++.-..|
T Consensus 809 l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 809 LARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred HHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence 764 122111 111 2333444444455667777766666666654433
No 21
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=99.00 E-value=3.8e-09 Score=99.26 Aligned_cols=88 Identities=24% Similarity=0.345 Sum_probs=76.6
Q ss_pred CCCCC-ccccccCCCCCCeEEEEEEeeeCC----ee-EEEEEEEecCCCCccccceeeccC-ccCcccCCCCCCCcCCCC
Q 004132 630 SPVPA-LPVVLPASTGQGLQIGAELTRQDG----QV-FYSMLFENNTQTPLDGFMIQFNKN-TFGLAAGGALQVPQLQPG 702 (772)
Q Consensus 630 ~~~~~-~~~~~~~~~~~gl~i~~~~~~~~~----~~-~~~~~~tN~~~~~~~~f~~q~n~n-~fgl~~~~~~~~~~l~p~ 702 (772)
+++++ ..++++...|+||.+.++|.|++. +| .++++|+|++.++++++.+ -+|| .-|+....+..++.|+||
T Consensus 51 s~v~~k~~eLL~~v~G~GL~v~Y~F~RqP~~~s~~mvsIql~ftN~s~~~i~~I~i-~~k~l~~g~~i~~F~~I~~L~pg 129 (145)
T PF14796_consen 51 SFVPPKKYELLNRVNGKGLSVEYRFSRQPSLYSPSMVSIQLTFTNNSDEPIKNIHI-GEKKLPAGMRIHEFPEIESLEPG 129 (145)
T ss_pred cccCcceEEeeeccCCCceeEEEEEccCCcCCCCCcEEEEEEEEecCCCeecceEE-CCCCCCCCcEeeccCcccccCCC
Confidence 34444 678899999999999999999754 44 8999999999999999999 6777 669999988889999999
Q ss_pred CeeeEEEeeeecCCCC
Q 004132 703 TSGRTLLPMVLFQNMS 718 (772)
Q Consensus 703 ~~~~~~~~l~~~~~~~ 718 (772)
+++++.+.|+|+++.|
T Consensus 130 ~s~t~~lgIDF~DStQ 145 (145)
T PF14796_consen 130 ASVTVSLGIDFNDSTQ 145 (145)
T ss_pred CeEEEEEEEecccCCC
Confidence 9999999999998754
No 22
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.1e-07 Score=106.22 Aligned_cols=407 Identities=18% Similarity=0.226 Sum_probs=238.6
Q ss_pred hHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHH
Q 004132 64 ALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAV 141 (772)
Q Consensus 64 alALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av 141 (772)
|.||-.|+++-..++.+.+.|.+++.|.+.++.||-.+++|++-+..-+-+-+.. +.+++.+..+|+|+-|.|+.-++
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 6789999999999999999999999999999999999999999987643322111 23788999999999999998776
Q ss_pred HHHHHHHhhC-CCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhH-------hhcCCCHH
Q 004132 142 AALAEIEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP-------RLQHANCA 213 (772)
Q Consensus 142 ~aL~eI~~~~-~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~-------~L~~~n~a 213 (772)
=.|..-+..- ..+.-+...+.+..|++.+-+.+-|.|-..--.++.+.-+-.++.-..++.+.. .-++.|--
T Consensus 456 WTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLl 535 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLL 535 (885)
T ss_pred eeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhccee
Confidence 6666544321 111234556778889999999999999988888887753222222222233322 23688999
Q ss_pred HHHHHHHHHHHhh-hhcCChHHHHHHHHhcccchhh---ccCC-chhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCC
Q 004132 214 VVLSAVKMILQQM-ELITSTDVVRNLCKKMAPPLVT---LLSA-EPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYND 288 (772)
Q Consensus 214 Vv~eaik~i~~~~-~~i~~~~~~~~l~~~~~~~L~~---Lls~-~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d 288 (772)
|+|.||.++-... ..+..+. .++.+.|||+. ++++ |++ -+--|+++..++..-..=|.+ +..
T Consensus 536 ILYDAIgtlAdsvg~~Ln~~~----YiqiLmPPLi~KW~~lsd~DKd-LfPLLEClSsia~AL~~gF~P--------~~~ 602 (885)
T KOG2023|consen 536 ILYDAIGTLADSVGHALNKPA----YIQILMPPLIEKWELLSDSDKD-LFPLLECLSSIASALGVGFLP--------YAQ 602 (885)
T ss_pred hHHHHHHHHHHHHHHhcCcHH----HHHHhccHHHHHHHhcCcccch-HHHHHHHHHHHHHHHhccccc--------cCH
Confidence 9999999886532 1123343 34457888874 5654 444 466677777776543222322 333
Q ss_pred cHhHHHHHHHHHHHh----cccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHh
Q 004132 289 PIYVKMEKLEIMIKL----ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER------AAERCISVLLELIK 358 (772)
Q Consensus 289 ~~~Ik~~kL~lL~~L----~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~------~~~~~vd~Ll~ll~ 358 (772)
| |=.|..+++-+- +...+-.. ....|.+|..-+..-+.-+|+-... ...-.++.+++.+.
T Consensus 603 ~--Vy~Rc~~il~~t~q~~~~~~~~~~--------~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~ 672 (885)
T KOG2023|consen 603 P--VYQRCFRILQKTLQLLAKVQQDPT--------VEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQ 672 (885)
T ss_pred H--HHHHHHHHHHHHHHHHHhccCCcc--------ccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhc
Confidence 3 333444444321 11111000 0112333433333333333332211 11237888889999
Q ss_pred hccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChH---HHHHHHHHHHhhhccccCC-----HHHHHHHHhhh
Q 004132 359 IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEP---EAKASMIWIIGEYAERIDN-----ADELLESFLES 430 (772)
Q Consensus 359 ~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p---~a~~~~iwilGEy~~~i~~-----~~~~L~~l~~~ 430 (772)
.....|++.+...+.++..-.++.....+......+..-..| .+-..++|.+||-+-.+.. ..-+++.++.-
T Consensus 673 D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~i 752 (885)
T KOG2023|consen 673 DEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITI 752 (885)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHH
Confidence 999999999999999987765432111122222222111122 2446689999999876643 22344444332
Q ss_pred CCCC--CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh-hh--cCCCChHHHhhHHH-HHHHhcCCHH
Q 004132 431 FPEE--PAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN-AT--VETDNPDLRDRAYI-YWRLLSTDPE 494 (772)
Q Consensus 431 f~~e--~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~-~~--~~s~~~dvrdRA~~-y~~Ll~~~~~ 494 (772)
.... +..+-.-.-.++.|+..-+|++ ..+.+....+. |+ ..-+|-+-.+-|+. +-.++..+|.
T Consensus 753 in~~~~~~tllENtAITIGrLg~~~Pe~-vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 753 INRQNTPKTLLENTAITIGRLGYICPEE-VAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPS 821 (885)
T ss_pred hcccCchHHHHHhhhhhhhhhhccCHHh-cchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCch
Confidence 2222 2222222333578888888876 55555555443 22 12233455555543 2333444443
No 23
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1.4e-05 Score=95.36 Aligned_cols=424 Identities=16% Similarity=0.211 Sum_probs=268.1
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhh-ccccccc--cchH-HHH
Q 004132 51 FVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI-NAELVED--RGFL-ESL 125 (772)
Q Consensus 51 l~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~-~p~~~~~--~~~~-~~L 125 (772)
+..-+.+++-.+|.-|=+++..+-..+= +.+.+...+.. .+|-||..|+.-+-|+... .+.+-.+ ..+. ..|
T Consensus 9 Ll~~l~spDn~vr~~Ae~~l~~~~~~~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL 85 (1075)
T KOG2171|consen 9 LLQQLLSPDNEVRRQAEEALETLAKTEP---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLL 85 (1075)
T ss_pred HHHHhcCCCchHHHHHHHHHHHhhcccc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 3445566766779999999987643222 55556666654 8999999999999888754 2322211 1122 223
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccc---c-CCHHHHHHHHH
Q 004132 126 KDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---A-ADAREAENIVE 201 (772)
Q Consensus 126 ~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~---~-~~~~e~~~il~ 201 (772)
.....++.+.|...-.-++.||..+.-+..| ++.+.-|.+..+..++=.+-..+++|..+. . ....-..++..
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e~W---Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~ 162 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPEKW---PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLR 162 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhccccch---HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHH
Confidence 3345788999999888889999877643323 344566667777777777766666666442 1 12223345666
Q ss_pred HHhHhhcCCCHHHHHHHHHHHHHhhhhcC-ChHHHHHHHHhcccchhhc----cC-CchhHHHHHHHHHHHHHhhChhhh
Q 004132 202 RVTPRLQHANCAVVLSAVKMILQQMELIT-STDVVRNLCKKMAPPLVTL----LS-AEPEIQYVALRNINLIVQRRPTIL 275 (772)
Q Consensus 202 ~v~~~L~~~n~aVv~eaik~i~~~~~~i~-~~~~~~~l~~~~~~~L~~L----ls-~~~~iryvaL~~l~~i~~~~p~~~ 275 (772)
.+...+...+..|...|+|++..+..+.+ +++..+ ...-+.|.++.. +. .+...---+|..+..++...|.++
T Consensus 163 lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~-~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 163 LFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVD-KFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHH-HHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 66677777776799999999998877664 333333 233345544433 32 344455778999999999999999
Q ss_pred hhhcc-ee-e-----eccCCcHhHHHHHHHHHHHhccc------cc---HHHHHHHHHHhhhhcc-------------HH
Q 004132 276 AHEIK-VF-F-----CKYNDPIYVKMEKLEIMIKLASD------RN---IDQVLLEFKEYATEVD-------------VD 326 (772)
Q Consensus 276 ~~~~~-if-~-----~~~~d~~~Ik~~kL~lL~~L~n~------~N---v~~Il~EL~~y~~~~d-------------~~ 326 (772)
.+|+. ++ | +..+=+.++|..+|++|..++.- .+ ...++.-++.-+++.+ ++
T Consensus 242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 99864 22 2 22333578999999999987543 11 2233333333333221 11
Q ss_pred ---HHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCccc----HHHHHHHHHHhcccC
Q 004132 327 ---FVRKAVRAIGRCAIKLER--AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT----YESIIATLCESLDTL 397 (772)
Q Consensus 327 ---~~~~~v~aIg~la~k~~~--~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~----~~~ii~~L~~~l~~~ 397 (772)
-.+-+.++|-++|.+.++ ...-.+..+-.+++...-+-+..+...+.-+....++. ...++..++..|.|
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D- 400 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND- 400 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC-
Confidence 345677888888887753 23344566666777766666777777776666555543 23455556666666
Q ss_pred ChHHHHHHHHHHHhhhccccCC------HHHHHHHHhhhCC-CCCHHHHHHHHHHHHHHhhcCCCCChH----HHHHHHH
Q 004132 398 DEPEAKASMIWIIGEYAERIDN------ADELLESFLESFP-EEPAQVQLQLLTATVKLFLKKPTEGPQ----QMIQVVL 466 (772)
Q Consensus 398 ~~p~a~~~~iwilGEy~~~i~~------~~~~L~~l~~~f~-~e~~~vq~~lLta~~Kl~~~~p~~~~~----~~v~~vl 466 (772)
.+|.+|-+++..+|..+..+.. ...++..++.... .+++.|+...-.|++-++-.++.+... .++++.+
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l 480 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL 480 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 6899999999999999865531 1222223333332 357899999999999998888753233 2444344
Q ss_pred HhhhcCCCChHHHhhHH
Q 004132 467 NNATVETDNPDLRDRAY 483 (772)
Q Consensus 467 ~~~~~~s~~~dvrdRA~ 483 (772)
.... ++..+.||.-+.
T Consensus 481 ~~L~-~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 481 LLLL-QSSKPYVQEQAV 496 (1075)
T ss_pred HHHh-cCCchhHHHHHH
Confidence 4443 467788888764
No 24
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=5.4e-07 Score=102.19 Aligned_cols=365 Identities=19% Similarity=0.238 Sum_probs=209.0
Q ss_pred hHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC---Ch-----hhhHHHHHHHHHhhhCCCChH
Q 004132 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI---RV-----DKITEYLCDPLQRCLKDDDPY 96 (772)
Q Consensus 25 lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I---~~-----~ei~~~l~~~v~~~L~d~~py 96 (772)
+||+.++.+ -.+.-|.+.. --++-=|-+.|..++-+=+-..-.+ .. +||+ -++..+++-|+|+|.|
T Consensus 41 mK~ii~~ml--nGe~~p~Llm---~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMI-Lvcna~RkDLQHPNEy 114 (948)
T KOG1058|consen 41 MKKIIALML--NGEDLPSLLM---TIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMI-LVCNAYRKDLQHPNEY 114 (948)
T ss_pred HHHHHHHHH--cCCCchHHHH---HHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHH-HHHHHHhhhccCchHh
Confidence 667666533 3444455332 1223334556666655554433222 21 2332 3578899999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChh
Q 004132 97 VRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEW 176 (772)
Q Consensus 97 VRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew 176 (772)
||-...--+.|+- .||+++. +.+.++.+|+.+++.|+.||+.|+.+|.+... .++.=.++.+.+.|.. +.+|-
T Consensus 115 iRG~TLRFLckLk--E~ELlep--l~p~IracleHrhsYVRrNAilaifsIyk~~~-~L~pDapeLi~~fL~~--e~Dps 187 (948)
T KOG1058|consen 115 IRGSTLRFLCKLK--EPELLEP--LMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HLIPDAPELIESFLLT--EQDPS 187 (948)
T ss_pred hcchhhhhhhhcC--cHHHhhh--hHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hhcCChHHHHHHHHHh--ccCch
Confidence 9999888888874 8999986 99999999999999999999999999987631 1222223344444433 33332
Q ss_pred HHHHHHHHHhccccCCHHHHHHHHHHH------------------hHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHH
Q 004132 177 GQVFILDALSRYKAADAREAENIVERV------------------TPRLQHANCAVVLSAVKMILQQMELITSTDVVRNL 238 (772)
Q Consensus 177 ~qv~iL~~L~~~~~~~~~e~~~il~~v------------------~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l 238 (772)
..-..+-.|-. .|++.+.+.+... +....|+|++-.-.-+++++.++..- ++. +
T Consensus 188 CkRNAFi~L~~---~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~st-ssa----V 259 (948)
T KOG1058|consen 188 CKRNAFLMLFT---TDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSST-SSA----V 259 (948)
T ss_pred hHHHHHHHHHh---cCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcC-Cch----h
Confidence 22211111111 1222222222222 22223455655555566666554321 211 1
Q ss_pred HHhcccchhhccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHH--
Q 004132 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF-- 316 (772)
Q Consensus 239 ~~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL-- 316 (772)
.-.++..|++| +++|+.--.|-+++..++.+ ..|..+|.--|+.|..+. .+-+.|+.+|
T Consensus 260 ~fEaa~tlv~l-S~~p~alk~Aa~~~i~l~~k----------------esdnnvklIvldrl~~l~--~~~~~il~~l~m 320 (948)
T KOG1058|consen 260 IFEAAGTLVTL-SNDPTALKAAASTYIDLLVK----------------ESDNNVKLIVLDRLSELK--ALHEKILQGLIM 320 (948)
T ss_pred hhhhcceEEEc-cCCHHHHHHHHHHHHHHHHh----------------ccCcchhhhhHHHHHHHh--hhhHHHHHHHHH
Confidence 11234444443 33333333333333333222 123448888888888886 3445555555
Q ss_pred --HHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHhhccc------hhHHHHHHHHHHHHHhCcccHHHHH
Q 004132 317 --KEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLE-LIKIKVN------YVVQEAIIVIKDIFRRYPNTYESII 387 (772)
Q Consensus 317 --~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~-ll~~~~~------~v~~e~i~~l~~i~~~~p~~~~~ii 387 (772)
+..+...|-+++++++.-.-.++.. ...+..++.|-+ +.++.+. ..++..+..+.-.-.++|+..+.++
T Consensus 321 DvLrvLss~dldvr~Ktldi~ldLvss--rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV 398 (948)
T KOG1058|consen 321 DVLRVLSSPDLDVRSKTLDIALDLVSS--RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVV 398 (948)
T ss_pred HHHHHcCcccccHHHHHHHHHHhhhhh--ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHH
Confidence 3455678899999988654444432 233444554432 2222221 2456666777777778999999999
Q ss_pred HHHHHhcccCChHHHHHHHHHHHhhhccccCC-HHHHHHHHhhhCC
Q 004132 388 ATLCESLDTLDEPEAKASMIWIIGEYAERIDN-ADELLESFLESFP 432 (772)
Q Consensus 388 ~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~-~~~~L~~l~~~f~ 432 (772)
+.|.+.+.+. .+.+-..++-++.|--+..++ -..+++.+++.|.
T Consensus 399 ~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~ 443 (948)
T KOG1058|consen 399 SLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRASIIEKLLETFP 443 (948)
T ss_pred HHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhh
Confidence 9999999874 455556667777887766654 3456677766654
No 25
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.1e-06 Score=98.56 Aligned_cols=400 Identities=19% Similarity=0.269 Sum_probs=262.0
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhc-------CCChhhhHHHHHHH
Q 004132 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMG-------CIRVDKITEYLCDP 85 (772)
Q Consensus 13 ~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~-------~I~~~ei~~~l~~~ 85 (772)
.+++...|+|.+.+|-+--.+.++-. .||+.=-.| -+.-++++.+...|++|=--|- .-..++...|+-..
T Consensus 17 ~lLk~s~Spn~~~~~~~~~~leq~~~-~pdfnnYL~-~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~ 94 (885)
T KOG2023|consen 17 QLLKNSQSPNSETRNNVQEKLEQFNL-FPDFNNYLI-YILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSE 94 (885)
T ss_pred HHHHhccCCChHHHHHHHHHHHHHhc-ccchhceee-EEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHH
Confidence 45566778999999988887777655 788531111 1234567777778888744332 23356888899999
Q ss_pred HHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHH
Q 004132 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSK 165 (772)
Q Consensus 86 v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~ 165 (772)
+.+++.|.+|.||-+.-+-+..++...- +-.-++.++.|.++|...|....-.|+.||..||+.+..
T Consensus 95 ~l~~lgd~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~------------ 161 (885)
T KOG2023|consen 95 CLHGLGDASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQ------------ 161 (885)
T ss_pred HHhhccCchHHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHH------------
Confidence 9999999999999887776666653211 111123578889999988888888899999999987531
Q ss_pred HHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccc
Q 004132 166 LLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPP 245 (772)
Q Consensus 166 Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~ 245 (772)
.+. ++|. . +-.+-+++++..+.+|.++.++-.|+.|+-.+.. +......-. +.+....
T Consensus 162 ~ld-----s~~~--------~-------rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~-~~~qal~~~-iD~Fle~ 219 (885)
T KOG2023|consen 162 FLD-----SDVL--------T-------RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII-IQTQALYVH-IDKFLEI 219 (885)
T ss_pred HHh-----hhcc--------c-------CchHHhHHHHHHHHhCCChhHHHHHHhhhhheee-cCcHHHHHH-HHHHHHH
Confidence 111 1121 1 1123456777788899999999999888876532 222222211 2222222
Q ss_pred hhhccC-CchhHHHHHHHHHHHHHhhChhhhhhhcc-e----eeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHH-
Q 004132 246 LVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIK-V----FFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE- 318 (772)
Q Consensus 246 L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~~~~~-i----f~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~- 318 (772)
|-.|-+ .+||+|--+.+++..+...+|+-+.+|+. + +..-.+.|..|..+|-|...++|...-.+.++..-+.
T Consensus 220 lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~k 299 (885)
T KOG2023|consen 220 LFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDK 299 (885)
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence 333444 58999999999999999999998888864 2 2233455688999999999999987655544432211
Q ss_pred ----------hhhh-------cc---------H-------------------------------------HHHHHHHHHH
Q 004132 319 ----------YATE-------VD---------V-------------------------------------DFVRKAVRAI 335 (772)
Q Consensus 319 ----------y~~~-------~d---------~-------------------------------------~~~~~~v~aI 335 (772)
|..+ .+ . .+|+-+..+|
T Consensus 300 liPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaL 379 (885)
T KOG2023|consen 300 LIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAAL 379 (885)
T ss_pred HHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHH
Confidence 2110 00 0 1344455666
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHhhc---cchhHHHH-HHHHHHHHHh-----CcccHHHHHHHHHHhcccCChHHHHHHH
Q 004132 336 GRCAIKLERAAERCISVLLELIKIK---VNYVVQEA-IIVIKDIFRR-----YPNTYESIIATLCESLDTLDEPEAKASM 406 (772)
Q Consensus 336 g~la~k~~~~~~~~vd~Ll~ll~~~---~~~v~~e~-i~~l~~i~~~-----~p~~~~~ii~~L~~~l~~~~~p~a~~~~ 406 (772)
..+|.-|. +.++++++.+|+.. .+.++.|+ |-++.-|... +|.+ ..+++.+...|++ +.|-+|...
T Consensus 380 DVLanvf~---~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~D-KkplVRsIT 454 (885)
T KOG2023|consen 380 DVLANVFG---DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDD-KKPLVRSIT 454 (885)
T ss_pred HHHHHhhH---HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhcc-Cccceeeee
Confidence 66766553 56888888888754 34455554 4466666443 2322 2467777777776 567788999
Q ss_pred HHHHhhhccccCC--H----HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCC
Q 004132 407 IWIIGEYAERIDN--A----DELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 454 (772)
Q Consensus 407 iwilGEy~~~i~~--~----~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p 454 (772)
+|-++.|+..+-. . ..+|+.++.+..+.+..||-+.-.|++-+--.-.
T Consensus 455 CWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred eeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 9999999987632 2 2466667777788899999988888887755443
No 26
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=2.8e-05 Score=92.95 Aligned_cols=516 Identities=16% Similarity=0.198 Sum_probs=299.1
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhc-CCCCHHHHhHHHHHhcCCC-------hhhhH
Q 004132 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDS-QDPNPLIRALAVRTMGCIR-------VDKIT 79 (772)
Q Consensus 8 s~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl-~~~np~iralALrtl~~I~-------~~ei~ 79 (772)
+..|-..+.-+.++|-+.+|=+==.+.+.+...+ +. +.|..=+ ...||.+|.+|.--+-++. +.+.-
T Consensus 3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-~l----~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~ 77 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP-LL----PALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQ 77 (1075)
T ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc-hH----HHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence 3446666776777777778777777777777766 22 3333333 4578999999964443332 23444
Q ss_pred HHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhc-cccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCccc
Q 004132 80 EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE 157 (772)
Q Consensus 80 ~~l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~~-p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~ 157 (772)
..+-..+..++.+ +.+-||||-+..++-+.+.. |+ +=+++++.|....++.|+..+-.|+..|..+...-+..
T Consensus 78 ~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e--~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~--- 152 (1075)
T KOG2171|consen 78 QSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE--KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT--- 152 (1075)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc---
Confidence 4444445555544 88999999999999998753 33 21123455566678999999999999888775443221
Q ss_pred ccHHHHHHHH----HHhhcCChhHHHHHHHHHhccccCC---HHHHH---HH----HHHHhHhhcCCCHHHHHHHHHHHH
Q 004132 158 ITSHTLSKLL----TALNECTEWGQVFILDALSRYKAAD---AREAE---NI----VERVTPRLQHANCAVVLSAVKMIL 223 (772)
Q Consensus 158 l~~~~~~~Ll----~~L~~~~ew~qv~iL~~L~~~~~~~---~~e~~---~i----l~~v~~~L~~~n~aVv~eaik~i~ 223 (772)
..+++..++ +.+.+.+-=.++.-+|.+..|.... ..+.. .+ ++.+.+.++.-+....-++..++.
T Consensus 153 -~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 153 -LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALI 231 (1075)
T ss_pred -cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence 112233333 3344433227777788887665432 33322 22 333334455556655566666666
Q ss_pred HhhhhcCChHHHHHHHHhcccchhhcc-CC--chhHHHHHHHHHHHHHhhChhhhhhh-----------ccee-------
Q 004132 224 QQMELITSTDVVRNLCKKMAPPLVTLL-SA--EPEIQYVALRNINLIVQRRPTILAHE-----------IKVF------- 282 (772)
Q Consensus 224 ~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~--~~~iryvaL~~l~~i~~~~p~~~~~~-----------~~if------- 282 (772)
.+... .+..++.....++.--..+. ++ ++.+|..||..|..++..-|...+.+ ++..
T Consensus 232 El~e~--~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 232 ELLES--EPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHHhh--chHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence 65432 45555544333333212222 32 67899999999988775543322111 0000
Q ss_pred -----eec----cCCcHhHHHHHHHHHH-HhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh----hhHHH
Q 004132 283 -----FCK----YNDPIYVKMEKLEIMI-KLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE----RAAER 348 (772)
Q Consensus 283 -----~~~----~~d~~~Ik~~kL~lL~-~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~----~~~~~ 348 (772)
.-. ++++..+-.++||.+. .|.-+.=...+++-+..++++.+...|+.++.+|+.+++-.+ +..+.
T Consensus 310 ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~ 389 (1075)
T KOG2171|consen 310 EWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK 389 (1075)
T ss_pred hhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 011 1223445566666554 244445556666677788899999999999999999887543 34556
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHhC-ccc----HHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccCC----
Q 004132 349 CISVLLELIKIKVNYVVQEAIIVIKDIFRRY-PNT----YESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN---- 419 (772)
Q Consensus 349 ~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~-p~~----~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~---- 419 (772)
+++.++..+.+...-|+..+...+.++-... |+. ++.++..|...+++-..+.+.+.++-.+=+|.+..+.
T Consensus 390 Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~ 469 (1075)
T KOG2171|consen 390 ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE 469 (1075)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 6777777777777889999999888886543 333 3455556666777767777765444444444333321
Q ss_pred --HHHHHHH-HhhhCCCCCHHHHHHHHHHHHHHhhcCCCC------ChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhc
Q 004132 420 --ADELLES-FLESFPEEPAQVQLQLLTATVKLFLKKPTE------GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (772)
Q Consensus 420 --~~~~L~~-l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~------~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~ 490 (772)
-+.++++ |..-....++.||.+++||++-.+...... ..-+.+.++|+.+. +.+..++|-...+...++-
T Consensus 470 pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~-~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 470 PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD-DKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC-chhhHHHHhhHHHHHHHHH
Confidence 1234442 222233578999999999999887754321 12345566666543 2355667766667766664
Q ss_pred CC------HHHHHhhh---ccCCCCCCCCCCCCChHHHHHHHHhcCcccccccCCchhhh
Q 004132 491 TD------PEAAKDVV---LAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFV 541 (772)
Q Consensus 491 ~~------~~~~~~iv---l~~~p~~~~~~~~~~~~~l~~l~~~~~tl~~vy~kp~~~~~ 541 (772)
.- .+.+.+++ ..-. ...-..|..+..-++.-.+-++.+|++--..|.
T Consensus 549 ~AVGke~F~~~a~eliqll~~~~----~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L 604 (1075)
T KOG2171|consen 549 RAVGKEKFLPLAEELIQLLLELQ----GSDQDDDDPLRSYMIAFWARMCRILGDDFAPFL 604 (1075)
T ss_pred HHhhhhhhhHhHHHHHHHHHhhc----ccchhhccccHHHHHHHHHHHHHHhchhhHhHH
Confidence 21 11222222 1111 111122333445566667777888887655543
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.77 E-value=5.5e-05 Score=87.47 Aligned_cols=259 Identities=17% Similarity=0.211 Sum_probs=170.3
Q ss_pred HHhhcCCCCHHHHhHHHHHhcC----CChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHH
Q 004132 51 FVKDSQDPNPLIRALAVRTMGC----IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLE 123 (772)
Q Consensus 51 l~kDl~~~np~iralALrtl~~----I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~ 123 (772)
+-..+++.|.....++.+.|.. ....++.+...+.+.++|.|++|.||.-|+..+.++.+.+.. .+.+.+++.
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 5566666666666666644444 445666788889999999999999999999999998865533 344467889
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccc-cHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHH----
Q 004132 124 SLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN---- 198 (772)
Q Consensus 124 ~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~---- 198 (772)
.+..+|.|.|..|...|+.+|..+..+.... -.+ ....+.+|-+.+..+++=.++++++++......+++.+..
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~s 201 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNS 201 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence 9999999999999999999999998754321 111 1112444445455668889999999999887666554432
Q ss_pred -HHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHH-hcccchhhccC---Cch---hHHHHH-HHHHHHHHh
Q 004132 199 -IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS---AEP---EIQYVA-LRNINLIVQ 269 (772)
Q Consensus 199 -il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~-~~~~~L~~Lls---~~~---~iryva-L~~l~~i~~ 269 (772)
+++.+...+.+.+.-|.+.|+.++..+.. .+...+-+.+ .+.+.|..++. .+| .+-..+ ++-...+..
T Consensus 202 gll~~ll~eL~~dDiLvqlnalell~~La~---~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 202 GLLDLLLKELDSDDILVQLNALELLSELAE---TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred cHHHHHHHHhcCccHHHHHHHHHHHHHHHc---ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence 56677777888888889999999887643 3333333322 24444555552 344 222222 244444444
Q ss_pred hChhh-hhhh---c-ceeeeccCCcHhHHHHHHHHHHHhcccccHHHHH
Q 004132 270 RRPTI-LAHE---I-KVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVL 313 (772)
Q Consensus 270 ~~p~~-~~~~---~-~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il 313 (772)
..|.- ...+ + .+|.+..+.|..++.-|+|.+..+|...--..++
T Consensus 279 ~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L 327 (503)
T PF10508_consen 279 VSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLL 327 (503)
T ss_pred cChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHH
Confidence 34332 2211 1 2344556778889999999999988654433333
No 28
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=8.7e-06 Score=91.31 Aligned_cols=301 Identities=19% Similarity=0.204 Sum_probs=184.0
Q ss_pred chhHHHHHhhcCCCcchHHHHHH--HHHHhcc-CCCcHHHHH----HHHHHhhcC-CCCHHHHhHHHHHhcCCCh--hhh
Q 004132 9 SLFTDVVNCMQTENLELKKLVYL--YLINYAK-SQPDLAILA----VNTFVKDSQ-DPNPLIRALAVRTMGCIRV--DKI 78 (772)
Q Consensus 9 ~lf~~vi~l~~s~~~~lKrl~YL--~l~~~~~-~~~dl~lL~----iNtl~kDl~-~~np~iralALrtl~~I~~--~ei 78 (772)
..+..++..+-|++... ++-+. +-..++. .+|.+...+ +..|.+-+. +.+|.++--|-.+|.+|.+ .+-
T Consensus 66 ~~~~~~~~~~~S~~~~~-q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~ 144 (514)
T KOG0166|consen 66 SNLELMLAALYSDDPQQ-QLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ 144 (514)
T ss_pred hhhHHHHHHHhCCCHHH-HHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh
Confidence 34667777778888776 33333 3333333 335544433 344566664 6678888888888888753 333
Q ss_pred HHH-----HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCCh-hHHHHHHHHHHHHHh
Q 004132 79 TEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-MVVANAVAALAEIEE 149 (772)
Q Consensus 79 ~~~-----l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~L~~lL~D~d~-~Vv~~av~aL~eI~~ 149 (772)
... .+|.+.+++.+++..||-.|+.|++.+....|+ .+-+.+.++.|..++...++ ..+.++.-+|.-+|.
T Consensus 145 T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred ccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 322 256679999999999999999999999877664 45556778888888887766 567788888888887
Q ss_pred hC-CCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHH-----HHHHHHhHhhcCCCHHHHHHHHHHHH
Q 004132 150 NS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMIL 223 (772)
Q Consensus 150 ~~-~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~-----~il~~v~~~L~~~n~aVv~eaik~i~ 223 (772)
.. |.+-|+...+.+.-|...+...++-...-..=+++.+.....+... .++.++..+|.|....|+.-|+|++.
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiG 304 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIG 304 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcc
Confidence 65 5555666666666666666666666654444444433322222222 23456777788887777777888777
Q ss_pred HhhhhcCChHHHHHH-HHhcccchhhccC-Cc-hhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHH
Q 004132 224 QQMELITSTDVVRNL-CKKMAPPLVTLLS-AE-PEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 300 (772)
Q Consensus 224 ~~~~~i~~~~~~~~l-~~~~~~~L~~Lls-~~-~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL 300 (772)
++.. .+....+.+ -..+.+.|..|++ ++ ..||--|..+|..|..-.++-++.
T Consensus 305 NIvt--G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqa----------------------- 359 (514)
T KOG0166|consen 305 NIVT--GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQA----------------------- 359 (514)
T ss_pred ceee--ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHH-----------------------
Confidence 6421 122222211 1123333444443 22 235555666666555544321111
Q ss_pred HHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 004132 301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (772)
Q Consensus 301 ~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k 341 (772)
+.+. .++..|..-+...|.+.++++..+|+.++..
T Consensus 360 --Vida----~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 360 --VIDA----NLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred --HHHc----ccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 0111 2566677777778888899999999888764
No 29
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=2.4e-05 Score=88.82 Aligned_cols=340 Identities=15% Similarity=0.135 Sum_probs=221.0
Q ss_pred CCccchhHHHHHh-hcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC--ChhhhHHH
Q 004132 5 KDVSSLFTDVVNC-MQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI--RVDKITEY 81 (772)
Q Consensus 5 ~Dvs~lf~~vi~l-~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I--~~~ei~~~ 81 (772)
.|+..+.+.-++- +.|+|...--++-=+++.+ -.||+|.=..+-+..-|+++-|++|--|+-.|-.+ +-||-.+.
T Consensus 104 tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~f--vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~ 181 (877)
T KOG1059|consen 104 TDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCI--VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP 181 (877)
T ss_pred ccHHHHHHHHHHHHhccCccchhhheecccccc--cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh
Confidence 4555555555542 3333333222222233322 35888888888888889999999999999999876 57999999
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhc-CCChhHHHHHHHHHHHHHhhCCCCcccccH
Q 004132 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIFEITS 160 (772)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~-D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~ 160 (772)
..|-++.-|.|++|-|...|+-.++-+.+++|.-.-. +.+.+.++|. .+|--|+.-.+.++..+..-.|. +-.
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~--LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgK 255 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ--LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGK 255 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc--ccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhh
Confidence 9999999999999999999999999999999987654 7888888885 34556666666666555443332 222
Q ss_pred HHHHHHHHHhhcCChhH-HHHHHHHHhcc-----ccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHH
Q 004132 161 HTLSKLLTALNECTEWG-QVFILDALSRY-----KAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV 234 (772)
Q Consensus 161 ~~~~~Ll~~L~~~~ew~-qv~iL~~L~~~-----~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~ 234 (772)
+.+..|++.+....--. --..++.+-.- .+.+...+...++.+..++.++++...|=+..++.++++ +++.+
T Consensus 256 KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~ 333 (877)
T KOG1059|consen 256 KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKA 333 (877)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHH
Confidence 23344444433221110 00111111111 133445556666777777888888888888877777654 25665
Q ss_pred HHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhCh--hhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHH
Q 004132 235 VRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP--TILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQ 311 (772)
Q Consensus 235 ~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p--~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~ 311 (772)
+..- ...++++|+ .|+.||.-||+.+.-|+.+.. ++++.-++.+ ...|+...|.+-+.-+..+|+.+|...
T Consensus 334 Vqa~----kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~--~~ae~t~yrdell~~II~iCS~snY~~ 407 (877)
T KOG1059|consen 334 VQAH----KDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHV--EKAEGTNYRDELLTRIISICSQSNYQY 407 (877)
T ss_pred HHHh----HHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhccchhHHHHHHHHHHHHhhhhhhhh
Confidence 5432 222356775 799999999999999987753 3444333322 245667789999999999999999877
Q ss_pred HHH------HHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc
Q 004132 312 VLL------EFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360 (772)
Q Consensus 312 Il~------EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~ 360 (772)
|.+ -|.+.++-.-.+.-+++-..|-.++++.+..-..-|+.+..++...
T Consensus 408 ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~ 462 (877)
T KOG1059|consen 408 ITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDP 462 (877)
T ss_pred hhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhch
Confidence 643 1222222222233344556677788888887778888888888744
No 30
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=0.00021 Score=79.55 Aligned_cols=359 Identities=18% Similarity=0.194 Sum_probs=237.6
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhcc-----CCCcHHHHHHHHHHhhcC-CCCH-----HHHhHHHHHhcC-CChhhhHHH
Q 004132 14 VVNCMQTENLELKKLVYLYLINYAK-----SQPDLAILAVNTFVKDSQ-DPNP-----LIRALAVRTMGC-IRVDKITEY 81 (772)
Q Consensus 14 vi~l~~s~~~~lKrl~YL~l~~~~~-----~~~dl~lL~iNtl~kDl~-~~np-----~iralALrtl~~-I~~~ei~~~ 81 (772)
+++.+..+-++-||..-+-+...-+ .+.+-.-=+|..+-+|.. +++. -.-|+|..++|- .......+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 4556666666666666665544432 234445556666777773 3332 344566655542 223336788
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHH---HHHHHhhCCCCcc
Q 004132 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAA---LAEIEENSSRPIF 156 (772)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av~a---L~eI~~~~~~~~~ 156 (772)
+.++|..|+.|.+.-||--|+.+++.+.+.....+.. ..+.+.+.++..|+|..|..+|=.. +.+|...+. .-|
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~-~tF 163 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA-STF 163 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc-ccc
Confidence 8999999999999999999999999988876654432 2356777788889999998876321 222322221 123
Q ss_pred cccHHHHHHHHH-HhhcCChhHHHHHHHHHhccccCCHHHH----HHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcC-
Q 004132 157 EITSHTLSKLLT-ALNECTEWGQVFILDALSRYKAADAREA----ENIVERVTPRLQHANCAVVLSAVKMILQQMELIT- 230 (772)
Q Consensus 157 ~l~~~~~~~Ll~-~L~~~~ew~qv~iL~~L~~~~~~~~~e~----~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~- 230 (772)
.+ +.+..|++ .+...+|..+.+++.-|..+....+-+. ..+++-+...|...+..|.--|=.++..++..|.
T Consensus 164 sL--~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 164 SL--PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred CH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 22 23444443 3455789999999888876543333333 3456666778889999988776666666654444
Q ss_pred ChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhChhhhhhhc-----ceeeeccCCcH-hHHHHHHH---HH
Q 004132 231 STDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEI-----KVFFCKYNDPI-YVKMEKLE---IM 300 (772)
Q Consensus 231 ~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~~~~~~~-----~if~~~~~d~~-~Ik~~kL~---lL 300 (772)
+|+..+ ..++++.++.-+ ++++++|-.||.-|..+++..|..+-.+. .++-|..+++. ++|--|-. .|
T Consensus 242 ~P~s~d--~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l 319 (675)
T KOG0212|consen 242 SPSSMD--YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLL 319 (675)
T ss_pred CccccC--cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHH
Confidence 233321 124555566555 68999999999999999999876554442 35678887775 56655543 45
Q ss_pred HHhcccccH------HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhhccchhHHHHHH
Q 004132 301 IKLASDRNI------DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER----AAERCISVLLELIKIKVNYVVQEAII 370 (772)
Q Consensus 301 ~~L~n~~Nv------~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~----~~~~~vd~Ll~ll~~~~~~v~~e~i~ 370 (772)
.+++++.-- ..|++-|..|+.+...+-|-.+..-|..+-.+.+. ..+....+|+.-+.+..+.|+.-+..
T Consensus 320 ~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ 399 (675)
T KOG0212|consen 320 LKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALS 399 (675)
T ss_pred HHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHH
Confidence 666655433 38899999999988888888888877777776653 34567888888888888888887777
Q ss_pred HHHHHHH
Q 004132 371 VIKDIFR 377 (772)
Q Consensus 371 ~l~~i~~ 377 (772)
++..|..
T Consensus 400 lla~i~~ 406 (675)
T KOG0212|consen 400 LLASICS 406 (675)
T ss_pred HHHHHhc
Confidence 7777754
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.65 E-value=2.5e-06 Score=98.50 Aligned_cols=309 Identities=15% Similarity=0.181 Sum_probs=203.2
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHH-----HHHHHhhcCCCCHHHHhHHHHHhcCCC-hhhhHHHH--
Q 004132 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILA-----VNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITEYL-- 82 (772)
Q Consensus 11 f~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~-----iNtl~kDl~~~np~iralALrtl~~I~-~~ei~~~l-- 82 (772)
...+...+.+++..+|+++--.+.++++.+...+.++ ...+..-+.++|..+...|+++|..+. .+...+.+
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~ 158 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD 158 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC
Confidence 3445568899999999998888888887664433332 234567778999999999999999985 44444555
Q ss_pred ---HHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc---ccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcc
Q 004132 83 ---CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (772)
Q Consensus 83 ---~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~---~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~ 156 (772)
...+.+++..++..||.++..++.++...+++..+ ..|+++.+...|.+.|..|..||+-.+.++.....+..+
T Consensus 159 ~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~y 238 (503)
T PF10508_consen 159 SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQY 238 (503)
T ss_pred cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHH
Confidence 77888888888999999999999999999887643 467899999999999999999999999999884433222
Q ss_pred cccHHHHHHHHHHhhc--CCh-hHHHHHHHH---HhccccCCHHH----HHHHHHHHhHhhcCCCHHHHHHHHHHHHHhh
Q 004132 157 EITSHTLSKLLTALNE--CTE-WGQVFILDA---LSRYKAADARE----AENIVERVTPRLQHANCAVVLSAVKMILQQM 226 (772)
Q Consensus 157 ~l~~~~~~~Ll~~L~~--~~e-w~qv~iL~~---L~~~~~~~~~e----~~~il~~v~~~L~~~n~aVv~eaik~i~~~~ 226 (772)
-.....+.+|++.+.+ .+| +.-+.+... +......++.. ...+++.+...+.+.++.....|+-++..+.
T Consensus 239 L~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 239 LEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred HHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHh
Confidence 2233467778877754 356 554444333 33222212222 2456667777777788876666666666542
Q ss_pred hhcCChHHHHHHHHh-------cccchhhcc-CCchhHHHHHHHHHHHHHhhChh-----h---hhhhc--------c-e
Q 004132 227 ELITSTDVVRNLCKK-------MAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT-----I---LAHEI--------K-V 281 (772)
Q Consensus 227 ~~i~~~~~~~~l~~~-------~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~-----~---~~~~~--------~-i 281 (772)
+..+....+..+ +........ +...++|-.+|+++..|....+. + ....+ . .
T Consensus 319 ---st~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~ 395 (503)
T PF10508_consen 319 ---STVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNL 395 (503)
T ss_pred ---CCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHH
Confidence 123333322111 111112222 35679999999999999644322 1 11111 1 2
Q ss_pred eeeccCCc-HhHHHHHHHHHHHhcccccHHHHH---HHHHHhhhh
Q 004132 282 FFCKYNDP-IYVKMEKLEIMIKLASDRNIDQVL---LEFKEYATE 322 (772)
Q Consensus 282 f~~~~~d~-~~Ik~~kL~lL~~L~n~~Nv~~Il---~EL~~y~~~ 322 (772)
+.-...-| +.+|.-++.+|..|+...-...-+ .++.+|+.+
T Consensus 396 l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 396 LMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 22223455 789999999999999876433332 245677744
No 32
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=6.8e-05 Score=86.06 Aligned_cols=383 Identities=15% Similarity=0.182 Sum_probs=222.6
Q ss_pred HhhcCCCCHHHHhHHHHHh-cCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhc
Q 004132 52 VKDSQDPNPLIRALAVRTM-GCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS 130 (772)
Q Consensus 52 ~kDl~~~np~iralALrtl-~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~ 130 (772)
+.-|++.+.--+.-|++.+ +-|..-+=+..+.|+|.|.....|+-|||-..+-+.+.....|++.-- =+..+++-|.
T Consensus 41 ~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--SIntfQk~L~ 118 (968)
T KOG1060|consen 41 KQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--SINTFQKALK 118 (968)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--eHHHHHhhhc
Confidence 3344555555555666544 333333336778899999999999999999999999999999987542 2688999999
Q ss_pred CCChhHHHHHHHHHHHHHhhCCCCcccccHHHHH-HHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcC
Q 004132 131 DNNPMVVANAVAALAEIEENSSRPIFEITSHTLS-KLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQH 209 (772)
Q Consensus 131 D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~-~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~ 209 (772)
|+|+.+++.|+.+|..|.- ..+.+.+- .+=+...|.+++.+-..-.++.++-.-++++-..+++.+..+|..
T Consensus 119 DpN~LiRasALRvlSsIRv-------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD 191 (968)
T KOG1060|consen 119 DPNQLIRASALRVLSSIRV-------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLAD 191 (968)
T ss_pred CCcHHHHHHHHHHHHhcch-------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcC
Confidence 9999999999999988853 22222221 122233478899877666666654445555556788888889999
Q ss_pred CCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCC-chhHHHHHHHHHHHHHhhC---hhh-----------
Q 004132 210 ANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRR---PTI----------- 274 (772)
Q Consensus 210 ~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~-~~~iryvaL~~l~~i~~~~---p~~----------- 274 (772)
..+-|+=.|+-++-.+.+ +-+.-+- +--..|++++-. +.==|.+.+..|.+.+... |..
T Consensus 192 ~splVvgsAv~AF~evCP-----erldLIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~ 265 (968)
T KOG1060|consen 192 RSPLVVGSAVMAFEEVCP-----ERLDLIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRS 265 (968)
T ss_pred CCCcchhHHHHHHHHhch-----hHHHHhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCccc
Confidence 999999998888765432 2222111 111123455532 3334666667776665432 311
Q ss_pred ---------------hhhhcce----e-eeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHH
Q 004132 275 ---------------LAHEIKV----F-FCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRA 334 (772)
Q Consensus 275 ---------------~~~~~~i----f-~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~a 334 (772)
..+..+. . -|+++...+|-+..-.+.+.|+-.+-+..|++-|...+++ ..+.+.-..+.
T Consensus 266 ~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs-~~~vqyvvL~n 344 (968)
T KOG1060|consen 266 CNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS-NREVQYVVLQN 344 (968)
T ss_pred ccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc-CCcchhhhHHH
Confidence 0011111 1 1234555667777778888888777777777777775554 33455556677
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHHHHHHHHHHhhh
Q 004132 335 IGRCAIKLERAAERCISVLLELIKIKVNYVVQ-EAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEY 413 (772)
Q Consensus 335 Ig~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~-e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy 413 (772)
|..++++-+...+-|+.-. ++...+.+... =-+..+..+... .....|+..+-.++.+-+. +.-+..+--||.+
T Consensus 345 Ia~~s~~~~~lF~P~lKsF--fv~ssDp~~vk~lKleiLs~La~e--sni~~ILrE~q~YI~s~d~-~faa~aV~AiGrC 419 (968)
T KOG1060|consen 345 IATISIKRPTLFEPHLKSF--FVRSSDPTQVKILKLEILSNLANE--SNISEILRELQTYIKSSDR-SFAAAAVKAIGRC 419 (968)
T ss_pred HHHHHhcchhhhhhhhhce--EeecCCHHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHHhcCch-hHHHHHHHHHHHH
Confidence 7777776544433332211 01111111110 011122222211 1122333334444443222 3446667777888
Q ss_pred ccccCC-HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCC
Q 004132 414 AERIDN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (772)
Q Consensus 414 ~~~i~~-~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~ 455 (772)
+..+.. ++.+|.-++..+..++..|-.+....+=+|.-+.|.
T Consensus 420 A~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~ 462 (968)
T KOG1060|consen 420 ASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA 462 (968)
T ss_pred HHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence 776643 455666666555555555555555555555555553
No 33
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.49 E-value=9.8e-05 Score=84.03 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=74.6
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCC-ChHHHHHHHHHHHHHHhhccccc-cc-cchHH
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAELV-ED-RGFLE 123 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~-~pyVRK~Aa~~l~kl~~~~p~~~-~~-~~~~~ 123 (772)
.|.+++-|+.+.+++||--.-|+.+-+.+.-=++.+.|.++....+. ++--|.+.+-|+-++.-+.--.+ .. ..+++
T Consensus 477 mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ 556 (1172)
T KOG0213|consen 477 MISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVK 556 (1172)
T ss_pred HHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHH
Confidence 46789999999999999888888777655555567777788888885 89999999999988876543211 11 24678
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHh
Q 004132 124 SLKDLISDNNPMVVANAVAALAEIEE 149 (772)
Q Consensus 124 ~L~~lL~D~d~~Vv~~av~aL~eI~~ 149 (772)
.+..+|.|.+.-|..-+..++..+.+
T Consensus 557 ii~~gl~De~qkVR~itAlalsalae 582 (1172)
T KOG0213|consen 557 IIEHGLKDEQQKVRTITALALSALAE 582 (1172)
T ss_pred HHHHhhcccchhhhhHHHHHHHHHHH
Confidence 88899999987776544444443333
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=8e-05 Score=83.73 Aligned_cols=259 Identities=19% Similarity=0.249 Sum_probs=181.5
Q ss_pred chhHHHHHhhc-CCCcchHHHHHHHHHHhccCCCcHHHHHHH-----HHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHH
Q 004132 9 SLFTDVVNCMQ-TENLELKKLVYLYLINYAKSQPDLAILAVN-----TFVKDSQDPNPLIRALAVRTMGCIR--VDKITE 80 (772)
Q Consensus 9 ~lf~~vi~l~~-s~~~~lKrl~YL~l~~~~~~~~dl~lL~iN-----tl~kDl~~~np~iralALrtl~~I~--~~ei~~ 80 (772)
...+..|.++. .++..++--+--++.+.+.-.+|..-.+++ .|.+-+.++++.|+.-|+-+||+|. ++..-.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 45677788886 455778888888999999876665444433 4889999999999999999999996 333333
Q ss_pred HH-----HHHHHhhhCCCCh-HHHHHHHHHHHHHHhhc-cc--cccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhC
Q 004132 81 YL-----CDPLQRCLKDDDP-YVRKTAAICVAKLYDIN-AE--LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (772)
Q Consensus 81 ~l-----~~~v~~~L~d~~p-yVRK~Aa~~l~kl~~~~-p~--~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~ 151 (772)
++ ++++...+...++ -.++.|..++..+++.. |. .......++.|..+|.+.|+.|+..|+-|+..+....
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 33 5677788877776 67788999999999854 42 2222347899999999999999999999999987654
Q ss_pred CCCc-ccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHH-----HHHhHhhc-CCCHHHHHHHHHHHHH
Q 004132 152 SRPI-FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIV-----ERVTPRLQ-HANCAVVLSAVKMILQ 224 (772)
Q Consensus 152 ~~~~-~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il-----~~v~~~L~-~~n~aVv~eaik~i~~ 224 (772)
...+ ..+..+.+.+|+..|..+++=.++-.||.+......++.....++ +.+..++. +-...+.-||+.+|.+
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN 348 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN 348 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 3221 223345577777777778877788899999987766666655544 34555565 4556788999999987
Q ss_pred hhhhcCChHHHHHHH-HhcccchhhccC-CchhHHHHHHHHHHHHHh
Q 004132 225 QMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQ 269 (772)
Q Consensus 225 ~~~~i~~~~~~~~l~-~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~ 269 (772)
+.. .+++-++.++ ..+.|.|+.+++ .+-.+|--|..+|..+..
T Consensus 349 ItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 349 ITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred hhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 642 3444444332 256666666663 455566666665554443
No 35
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=98.43 E-value=0.00016 Score=80.19 Aligned_cols=128 Identities=23% Similarity=0.337 Sum_probs=77.8
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHhcccC---C-hHHHHHHHHHHHhhhccccCCH---HHHHHHHhhh-----------C
Q 004132 370 IVIKDIFRRYPNTYESIIATLCESLDTL---D-EPEAKASMIWIIGEYAERIDNA---DELLESFLES-----------F 431 (772)
Q Consensus 370 ~~l~~i~~~~p~~~~~ii~~L~~~l~~~---~-~p~a~~~~iwilGEy~~~i~~~---~~~L~~l~~~-----------f 431 (772)
..+-.+++++|...-..-..+.+.+... . ..+.-..++|+||||+.-.-+. .+++..+.+. -
T Consensus 290 s~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~llyE~~~~~ 369 (459)
T PF14764_consen 290 SQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLYEVTQSR 369 (459)
T ss_pred HHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHHHHhhcc
Confidence 3456667777865333333444444332 2 2334567899999998644332 3333333221 1
Q ss_pred -------CCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh-h-----------hcCCCChHHHhhHHHHHHHhcCC
Q 004132 432 -------PEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN-A-----------TVETDNPDLRDRAYIYWRLLSTD 492 (772)
Q Consensus 432 -------~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~-~-----------~~~s~~~dvrdRA~~y~~Ll~~~ 492 (772)
...++.+=..++|+++|++.|.++ .-+.+.-.|.+ . ..+..+..|..||.||+.||+.
T Consensus 370 ~~~~~~~~~~~~rl~~~lmt~laKLAsr~~d--l~pRv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~- 446 (459)
T PF14764_consen 370 RDPSASRPSSQPRLMTVLMTALAKLASRSQD--LIPRVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKM- 446 (459)
T ss_pred ccccccCCCCchhHHHHHHHHHHHHHHhCHh--hhHHHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcC-
Confidence 134567778899999999999875 33332222222 1 2456789999999999999985
Q ss_pred HHHHHhhh
Q 004132 493 PEAAKDVV 500 (772)
Q Consensus 493 ~~~~~~iv 500 (772)
|..|..|+
T Consensus 447 PsvA~~vL 454 (459)
T PF14764_consen 447 PSVAQFVL 454 (459)
T ss_pred chHHHHhc
Confidence 77765544
No 36
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.42 E-value=0.00062 Score=83.35 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=116.6
Q ss_pred CcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhH--HHHHHHHHhhhCCCChHH
Q 004132 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKIT--EYLCDPLQRCLKDDDPYV 97 (772)
Q Consensus 22 ~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~--~~ei~--~~l~~~v~~~L~d~~pyV 97 (772)
++.--++.|.|+..-..-..- .=-..+.+..-+..+-+-+|.-|||+++.|. .+.+. +.+-..|..-+.|++.-|
T Consensus 793 d~~~a~li~~~la~~r~f~~s-fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQS-FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHHh-hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHH
Confidence 344556777766443222111 1112244455566778899999999999986 33332 566677889999999999
Q ss_pred HHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhH
Q 004132 98 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWG 177 (772)
Q Consensus 98 RK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~ 177 (772)
|-+|+.-++|+.--+|+.+.. +.+.+..-+.|...+|+--++..+.+||...|. |...+....++++..+|-..-.
T Consensus 872 REAaldLvGrfvl~~~e~~~q--yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd--f~~i~~~cakmlrRv~DEEg~I 947 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELIFQ--YYDQIIERILDTGVSVRKRVIKILRDICEETPD--FSKIVDMCAKMLRRVNDEEGNI 947 (1692)
T ss_pred HHHHHHHHhhhhhccHHHHHH--HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC--hhhHHHHHHHHHHHhccchhHH
Confidence 999999999999999999885 899999999999999999999999999987654 6667777888888766544333
Q ss_pred HHHHHHHHh
Q 004132 178 QVFILDALS 186 (772)
Q Consensus 178 qv~iL~~L~ 186 (772)
|--+...+.
T Consensus 948 ~kLv~etf~ 956 (1692)
T KOG1020|consen 948 KKLVRETFL 956 (1692)
T ss_pred HHHHHHHHH
Confidence 333344443
No 37
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=98.30 E-value=2.5e-06 Score=76.87 Aligned_cols=75 Identities=23% Similarity=0.283 Sum_probs=63.4
Q ss_pred CCCCCeEEEEEEeeeCCeeEEEEEEEecCCCCccccceeeccCccCcccCCCCCCCcCCCCCeeeEEEeeeecCC
Q 004132 642 STGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQN 716 (772)
Q Consensus 642 ~~~~gl~i~~~~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~fgl~~~~~~~~~~l~p~~~~~~~~~l~~~~~ 716 (772)
++.+||+|.+.+.|+++++.+.++++|++..++++|.+|++++.++....+++.-+.|+||+++...+.+.+.++
T Consensus 2 ~~~~~l~I~~~~~~~~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~~~~ 76 (104)
T smart00809 2 YEKNGLQIGFKFERRPGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVENPGK 76 (104)
T ss_pred ccCCCEEEEEEEEcCCCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEECCCC
Confidence 478899999999999999999999999999999999999999776544444444468999999888888876654
No 38
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.22 E-value=4.9e-06 Score=72.19 Aligned_cols=84 Identities=30% Similarity=0.458 Sum_probs=68.6
Q ss_pred HHHHhhc-CCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHH
Q 004132 49 NTFVKDS-QDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (772)
Q Consensus 49 Ntl~kDl-~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~ 127 (772)
..+.+-+ +|+|+.+|..|+++||.++.++..+. +.++++|+++.||..|+.+++++- ++ ..++.|.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~----L~~~l~d~~~~vr~~a~~aL~~i~--~~------~~~~~L~~ 69 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEAIPA----LIELLKDEDPMVRRAAARALGRIG--DP------EAIPALIK 69 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHH----HHHHHTSSSHHHHHHHHHHHHCCH--HH------HTHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHH----HHHHHcCCCHHHHHHHHHHHHHhC--CH------HHHHHHHH
Confidence 4567777 89999999999999999998866555 777889999999999999999884 23 35678888
Q ss_pred hhcC-CChhHHHHHHHHH
Q 004132 128 LISD-NNPMVVANAVAAL 144 (772)
Q Consensus 128 lL~D-~d~~Vv~~av~aL 144 (772)
++.| .+..|...|+.+|
T Consensus 70 ~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 70 LLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTC-SSHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHhhc
Confidence 8765 5667778887776
No 39
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00066 Score=78.60 Aligned_cols=176 Identities=19% Similarity=0.247 Sum_probs=120.4
Q ss_pred HhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHH
Q 004132 87 QRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKL 166 (772)
Q Consensus 87 ~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~L 166 (772)
.|++.+.+=-=+|...+|+.-+..-+.|+.-- +...|++=|+.+|-.||.-|+++|..|+... ...-..+.+.+|
T Consensus 76 lKLias~~f~dKRiGYLaamLlLdE~qdvllL--ltNslknDL~s~nq~vVglAL~alg~i~s~E---mardlapeVe~L 150 (866)
T KOG1062|consen 76 LKLIASDNFLDKRIGYLAAMLLLDERQDLLLL--LTNSLKNDLNSSNQYVVGLALCALGNICSPE---MARDLAPEVERL 150 (866)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccchHHHHH--HHHHHHhhccCCCeeehHHHHHHhhccCCHH---HhHHhhHHHHHH
Confidence 35555666556677777777666655555432 4456666677888999999999999887421 111112234444
Q ss_pred HHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccch
Q 004132 167 LTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPL 246 (772)
Q Consensus 167 l~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L 246 (772)
++ ..+|+.+-+.+-++.++..+.++..+.+++....+|...+.+|+..++..+..+... +++.+.. .+++.+.|
T Consensus 151 l~---~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~--~~~~l~~-fr~l~~~l 224 (866)
T KOG1062|consen 151 LQ---HRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI--SPDALSY-FRDLVPSL 224 (866)
T ss_pred Hh---CCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc--CHHHHHH-HHHHHHHH
Confidence 44 589999999988888888888888899999999999999999999999998876531 3444332 22344444
Q ss_pred hhcc----C------------CchhHHHHHHHHHHHHHhhChh
Q 004132 247 VTLL----S------------AEPEIQYVALRNINLIVQRRPT 273 (772)
Q Consensus 247 ~~Ll----s------------~~~~iryvaL~~l~~i~~~~p~ 273 (772)
++.| + ++|=+|.-.||.+..+.+.+++
T Consensus 225 V~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d 267 (866)
T KOG1062|consen 225 VKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD 267 (866)
T ss_pred HHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc
Confidence 4322 1 3577888888888888776653
No 40
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.0002 Score=79.59 Aligned_cols=337 Identities=12% Similarity=0.180 Sum_probs=200.8
Q ss_pred CCHHHHhHHHHHhcCCC-hhhhHHH-HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChh
Q 004132 58 PNPLIRALAVRTMGCIR-VDKITEY-LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPM 135 (772)
Q Consensus 58 ~np~iralALrtl~~I~-~~ei~~~-l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~ 135 (772)
.||.-+--||-.|..++ .+.|+.. +......-+.-++..-.---+-++..+...+|+.... +.+.|...|+|+-.+
T Consensus 202 ~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q--~rpfL~~wls~k~em 279 (898)
T COG5240 202 GNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQ--LRPFLNSWLSDKFEM 279 (898)
T ss_pred CChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHH--HHHHHHHHhcCcchh
Confidence 46777777888888775 4455432 2222222111112111111122344455667776653 778888888998899
Q ss_pred HHHHHHHHHHHHHhhC-CCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHH
Q 004132 136 VVANAVAALAEIEENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 214 (772)
Q Consensus 136 Vv~~av~aL~eI~~~~-~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aV 214 (772)
|..-+..+++.....+ ++..++.....++.+|+.-+-..-|.-+.+|.-|+.-.|+.-.-.. ..+..+..+.|..+
T Consensus 280 V~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN---~evEsLIsd~Nr~I 356 (898)
T COG5240 280 VFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN---KEVESLISDENRTI 356 (898)
T ss_pred hhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC---hhHHHHhhcccccc
Confidence 9888888877776655 3333333444455555443344556666666666544443211000 12334556778888
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCC-chhHHHHHHHHHHHHHhhChhhhhhhccee-eecc-CCcHh
Q 004132 215 VLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRRPTILAHEIKVF-FCKY-NDPIY 291 (772)
Q Consensus 215 v~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~-~~~iryvaL~~l~~i~~~~p~~~~~~~~if-~~~~-~d~~~ 291 (772)
-.-||.++++ ....+.+..+. ..+.++++. ..+.+.+++.++..+.-.+|.-....+..+ ..+. .--..
T Consensus 357 styAITtLLK----TGt~e~idrLv----~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~e 428 (898)
T COG5240 357 STYAITTLLK----TGTEETIDRLV----NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLE 428 (898)
T ss_pred hHHHHHHHHH----cCchhhHHHHH----HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccch
Confidence 8888888886 23455555443 333456653 567888888888888877775333222211 1112 23355
Q ss_pred HHHHHHHHHHHhc--ccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhccchhHHH
Q 004132 292 VKMEKLEIMIKLA--SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER--AAERCISVLLELIKIKVNYVVQE 367 (772)
Q Consensus 292 Ik~~kL~lL~~L~--n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~--~~~~~vd~Ll~ll~~~~~~v~~e 367 (772)
.|+-..|.+..+. .++.-+.++.+|.+|+.++. |-+-+++-+|.++...|. ...+||..+..-+-..++.|+..
T Consensus 429 FK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsa 506 (898)
T COG5240 429 FKKYMVDAISDAMENDPDSKERALEVLCTFIEDCE--YHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSA 506 (898)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHH
Confidence 7888888888765 34667788888888888764 556677777888876553 34578888887777778888888
Q ss_pred HHHHHHHHHHh--CcccHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 004132 368 AIIVIKDIFRR--YPNTYESIIATLCESLDTLDEPEAKASMIWII 410 (772)
Q Consensus 368 ~i~~l~~i~~~--~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwil 410 (772)
++..+...--+ .+-.++++...|-+++++ .+.++|-.+.+.+
T Consensus 507 Av~aLskf~ln~~d~~~~~sv~~~lkRclnD-~DdeVRdrAsf~l 550 (898)
T COG5240 507 AVQALSKFALNISDVVSPQSVENALKRCLND-QDDEVRDRASFLL 550 (898)
T ss_pred HHHHHHHhccCccccccHHHHHHHHHHHhhc-ccHHHHHHHHHHH
Confidence 88877654322 344566676667777766 3455655454444
No 41
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00017 Score=76.35 Aligned_cols=330 Identities=15% Similarity=0.157 Sum_probs=199.9
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhccCCCcHH----HHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----hHHH-HH
Q 004132 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLA----ILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----ITEY-LC 83 (772)
Q Consensus 14 vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~----lL~iNtl~kDl~~~np~iralALrtl~~I~~~e-----i~~~-l~ 83 (772)
|.-++++.+..+.+-+.-.+.+++-....-. ++-..-+...+..++-.+|+.|+.++.++.+-+ ++.. -.
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 4457888888899988888888876543211 111222555666777789999999998876432 2221 24
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhh--ccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCC--CCccccc
Q 004132 84 DPLQRCLKDDDPYVRKTAAICVAKLYDI--NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS--RPIFEIT 159 (772)
Q Consensus 84 ~~v~~~L~d~~pyVRK~Aa~~l~kl~~~--~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~--~~~~~l~ 159 (772)
.++.++.+.++-.||+.|.-++..+-.. +...+.+.|-++.|..++...|+.|..-+..++.-|.-... +.+-+--
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqae 249 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAE 249 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcc
Confidence 5677788999999999998888776543 22333345778999999999999999999999988864321 1111222
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHH-----HHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHH
Q 004132 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-----VERVTPRLQHANCAVVLSAVKMILQQMELITSTDV 234 (772)
Q Consensus 160 ~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~i-----l~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~ 234 (772)
++.+++|+..+.+.++-.|+..=..|+.+..+. +--..+ ++.+..+|++..--.+++.+-||-++.-.--++..
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l 328 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL 328 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc
Confidence 345777777778888888887766666664332 211222 33455667766556667777777432100001111
Q ss_pred HHHHHHhcccchhhccC-Cch-hHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHH
Q 004132 235 VRNLCKKMAPPLVTLLS-AEP-EIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQV 312 (772)
Q Consensus 235 ~~~l~~~~~~~L~~Lls-~~~-~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~I 312 (772)
+-. .-...||+++|+ ++. |+|..|..++..++..+..- .++| -+++ -
T Consensus 329 I~d--agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n----~~~i----------------------~esg---A 377 (550)
T KOG4224|consen 329 IAD--AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN----VSVI----------------------RESG---A 377 (550)
T ss_pred eec--ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh----hHHH----------------------hhcC---c
Confidence 110 023456788885 444 47877777777766532210 0000 0111 1
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 004132 313 LLEFKEYATEVDVDFVRKAVRAIGRCAIKLER----AAERCISVLLELIKIKVNYVVQEAIIVIKDI 375 (772)
Q Consensus 313 l~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~----~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i 375 (772)
+..|.+.+.+.+.+|+.++-.+|+.+|..-.. ...-.+++|+.+.......|...+...+.++
T Consensus 378 i~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nl 444 (550)
T KOG4224|consen 378 IPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINL 444 (550)
T ss_pred hHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhh
Confidence 44555667778888888888888777753211 0112355666666665666665555555544
No 42
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.07 E-value=0.0042 Score=71.26 Aligned_cols=191 Identities=16% Similarity=0.234 Sum_probs=116.8
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHH
Q 004132 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQ 87 (772)
Q Consensus 10 lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~--~~ei~~~l~~~v~ 87 (772)
.|-.++..... +...|||+--++..|.+.-|++.--++|++..-|+|.+..||..|+|.|..++ .++.+.-+.+-+.
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~ 102 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLV 102 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHH
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHH
Confidence 45666666665 68899999999999999999999999999999999999999999999999997 5688899999999
Q ss_pred hhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh--cCCChhHHHHHHHHHHHHHhhCCCCccc----ccHH
Q 004132 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI--SDNNPMVVANAVAALAEIEENSSRPIFE----ITSH 161 (772)
Q Consensus 88 ~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL--~D~d~~Vv~~av~aL~eI~~~~~~~~~~----l~~~ 161 (772)
++|...++-.+..+=.++..+++.+|... +...+..++ ...|..|.--++..|.+-...-+...+. .-.-
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~ 178 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDPKGT----LTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEF 178 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHH
Confidence 99999998888777777888888888643 223333333 1356677877777675533322222222 1111
Q ss_pred HHHHHHHHhhcCC--hhH-HHHHHHHHhcccc-CCHHHHHHHHHHHhH
Q 004132 162 TLSKLLTALNECT--EWG-QVFILDALSRYKA-ADAREAENIVERVTP 205 (772)
Q Consensus 162 ~~~~Ll~~L~~~~--ew~-qv~iL~~L~~~~~-~~~~e~~~il~~v~~ 205 (772)
.+..+.+.|.+++ ||- -+.+|+.|..|.. ....-...+++.+..
T Consensus 179 i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~e 226 (556)
T PF05918_consen 179 IVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEE 226 (556)
T ss_dssp HHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHH
Confidence 1222333444544 332 2345555555532 234344445555543
No 43
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0017 Score=73.70 Aligned_cols=405 Identities=15% Similarity=0.132 Sum_probs=228.7
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHH-HHHH-HhhhCCCChHHHHHHHHHHHHHHhhcccccc--c
Q 004132 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYL-CDPL-QRCLKDDDPYVRKTAAICVAKLYDINAELVE--D 118 (772)
Q Consensus 43 l~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l-~~~v-~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~--~ 118 (772)
++..+++.+++.+.+.---+--.-|...++-+.++..... +..+ +....+.+..+|-++....+-+.. .|+.++ .
T Consensus 118 I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~-~~ss~~~d~ 196 (823)
T KOG2259|consen 118 ISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGV-SPSSLTHDR 196 (823)
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhccc-CCCcccccH
Confidence 5666777788777765444444455566665544433221 1111 222233455555555444433332 333332 1
Q ss_pred cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhcccc-----CCH
Q 004132 119 RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKA-----ADA 193 (772)
Q Consensus 119 ~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~-----~~~ 193 (772)
......|..+..|.|+.|..+|+-+|..+.+ .+.+....+.+.++.+.|..+=.+...++++.-|+. .+.
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-----g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSE-----GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-----cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 2344557788899999999999999988865 266777778888888888777666666666654431 111
Q ss_pred -HHH----HHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHH-HHHhcccchhhccCCchhHHHHHHHHHHHH
Q 004132 194 -REA----ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRN-LCKKMAPPLVTLLSAEPEIQYVALRNINLI 267 (772)
Q Consensus 194 -~e~----~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~-l~~~~~~~L~~Lls~~~~iryvaL~~l~~i 267 (772)
.+- .+....|..-++...-.|..+|.|.+..+.. + +++.+.+ +-+++..-|.+- +-
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~-v-See~i~QTLdKKlms~lRRk----------------r~ 333 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ-V-SEEIIQQTLDKKLMSRLRRK----------------RT 333 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHH-h-HHHHHHHHHHHHHhhhhhhh----------------hh
Confidence 111 2233445555667777899999999986532 2 3344433 222322211110 11
Q ss_pred HhhChhhhhhhcceeee--ccCCcHhHHHHHHHHHHHhcccccHHHHHHH-HHHhhhhcc---HHHHHHHHHHHHHHHHh
Q 004132 268 VQRRPTILAHEIKVFFC--KYNDPIYVKMEKLEIMIKLASDRNIDQVLLE-FKEYATEVD---VDFVRKAVRAIGRCAIK 341 (772)
Q Consensus 268 ~~~~p~~~~~~~~if~~--~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~E-L~~y~~~~d---~~~~~~~v~aIg~la~k 341 (772)
..++|..+-..-. +.. .-++| +-.+. .|++.+..|-.- --.|+.-.. .++|+.+|.+++.+|..
T Consensus 334 ahkrpk~l~s~Ge-wSsGk~~~ad--vpsee-------~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s 403 (823)
T KOG2259|consen 334 AHKRPKALYSSGE-WSSGKEWNAD--VPSEE-------DDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS 403 (823)
T ss_pred cccchHHHHhcCC-cccCcccccc--Cchhh-------ccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC
Confidence 1122322111000 000 01122 00011 111111111000 001222222 35688999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHHHHHHHHHHhhh--ccccCC
Q 004132 342 LERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEY--AERIDN 419 (772)
Q Consensus 342 ~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy--~~~i~~ 419 (772)
-|..+..++|.|++++......|+-.++..++.|..+ -..++..+..+++.|++ ..+++++++--+++-- .+.- -
T Consensus 404 sP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-l~i~eeql~~il~~L~D-~s~dvRe~l~elL~~~~~~d~~-~ 480 (823)
T KOG2259|consen 404 SPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH-LAIREEQLRQILESLED-RSVDVREALRELLKNARVSDLE-C 480 (823)
T ss_pred CCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-heecHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCcHH-H
Confidence 9999999999999999999999999999999988655 55778888999999987 4678888887777653 2210 0
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh-hhcCCCChHHHhhHHHHH
Q 004132 420 ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN-ATVETDNPDLRDRAYIYW 486 (772)
Q Consensus 420 ~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~-~~~~s~~~dvrdRA~~y~ 486 (772)
..-.+..++.++.. -|.-|-.++.+..|+.-+.+.- ...++.+++.. -+.....+++-|++|.-.
T Consensus 481 i~m~v~~lL~~L~k-yPqDrd~i~~cm~~iGqnH~~l-v~s~m~rfl~kh~~f~t~e~s~ed~~y~ak 546 (823)
T KOG2259|consen 481 IDMCVAHLLKNLGK-YPQDRDEILRCMGRIGQNHRRL-VLSNMGRFLEKHTSFATIEPSLEDGFYIAK 546 (823)
T ss_pred HHHHHHHHHHHhhh-CCCCcHHHHHHHHHHhccChhh-HHHHHHHHHHhcccccccCccccChhhhhh
Confidence 12223333333221 1122334788888887776653 55566666633 222345677888876554
No 44
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.98 E-value=0.001 Score=74.69 Aligned_cols=435 Identities=18% Similarity=0.195 Sum_probs=226.9
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCC-ChHHHHHHHHHHHHHHhhccc-ccc-ccchHHH
Q 004132 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAE-LVE-DRGFLES 124 (772)
Q Consensus 48 iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~-~pyVRK~Aa~~l~kl~~~~p~-~~~-~~~~~~~ 124 (772)
+.+++-|+.+.+|+||--.-|+.|-+...-=++.+.|.+..+..+. ++--|.+.+-|+.++..+.-- .+. -.++++.
T Consensus 283 vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~c 362 (975)
T COG5181 283 VSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKC 362 (975)
T ss_pred eeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHH
Confidence 4568899999999999888887776655444566667688877774 889999999999998765321 111 1347788
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccH---------------HHHHHHHHHhhc----CC-hh---HHHHH
Q 004132 125 LKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS---------------HTLSKLLTALNE----CT-EW---GQVFI 181 (772)
Q Consensus 125 L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~---------------~~~~~Ll~~L~~----~~-ew---~qv~i 181 (772)
+.++|.|++-.|..-+..+|..+.+...+-..+... ..+..+|++..- .+ |+ -.-..
T Consensus 363 i~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~ 442 (975)
T COG5181 363 ISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREH 442 (975)
T ss_pred HHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHH
Confidence 899999998877655555555555443221111100 122233333210 01 11 12233
Q ss_pred HHHHhccccCCHHHHH-------------------HHHHHHhHhhc-------C-----CCHHHHHHHH---------HH
Q 004132 182 LDALSRYKAADAREAE-------------------NIVERVTPRLQ-------H-----ANCAVVLSAV---------KM 221 (772)
Q Consensus 182 L~~L~~~~~~~~~e~~-------------------~il~~v~~~L~-------~-----~n~aVv~eai---------k~ 221 (772)
++++.+.-...+++.. .+-+.|.+-+- . ++--|++.++ ++
T Consensus 443 m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v 522 (975)
T COG5181 443 MEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRV 522 (975)
T ss_pred HHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHH
Confidence 3333322212122211 11222222111 1 1222333333 22
Q ss_pred HHHhhhhcCChH-HHH----HHHHhcccchhhccCC-chhHHHHHHHHHHHHHhhC--------h---h-------hhhh
Q 004132 222 ILQQMELITSTD-VVR----NLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRR--------P---T-------ILAH 277 (772)
Q Consensus 222 i~~~~~~i~~~~-~~~----~l~~~~~~~L~~Lls~-~~~iryvaL~~l~~i~~~~--------p---~-------~~~~ 277 (772)
+-+++++.+++. -.+ .+..++...|.++--. .-+-||. +.+..-.|.. | . .-++
T Consensus 523 ~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~--d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp 600 (975)
T COG5181 523 SRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLY--DSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKP 600 (975)
T ss_pred HHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHH--HHHHHHHHhccccccEEEecccceeeehhhccCc
Confidence 222333343332 111 1233343333332211 2233332 2222211111 1 0 0112
Q ss_pred hc-----ceeeeccCCcHhHHHHHHHHHHHhcc------cc-cHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh--hh
Q 004132 278 EI-----KVFFCKYNDPIYVKMEKLEIMIKLAS------DR-NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK--LE 343 (772)
Q Consensus 278 ~~-----~if~~~~~d~~~Ik~~kL~lL~~L~n------~~-Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k--~~ 343 (772)
|. ++++.+.+.++.+|.++++++..|+- +. -...+=.-|.||+.+.+++.---++.||..+-.- +.
T Consensus 601 ~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 601 HLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred chHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 32 35677788899999999999877642 11 1111112245788888888877777777555432 21
Q ss_pred ---hhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCccc------------------------H-------------
Q 004132 344 ---RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT------------------------Y------------- 383 (772)
Q Consensus 344 ---~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~------------------------~------------- 383 (772)
+-...++-.|..+|+.+...|....|..+..|..+.|+. +
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 223445555666666555555444444443333333321 0
Q ss_pred ---HHHHHHHHHhcccCChHHH---HHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 004132 384 ---ESIIATLCESLDTLDEPEA---KASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEG 457 (772)
Q Consensus 384 ---~~ii~~L~~~l~~~~~p~a---~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~ 457 (772)
..++..|.++|+. ++-+- -+.+|-|+|||+- +-.++-.++..+..-...||--+|.|.+-+|-.....
T Consensus 761 iGPqdvL~~LlnnLkv-qeRq~RvctsvaI~iVae~cg----pfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~- 834 (975)
T COG5181 761 IGPQDVLDILLNNLKV-QERQQRVCTSVAISIVAEYCG----PFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA- 834 (975)
T ss_pred cCHHHHHHHHHhcchH-HHHHhhhhhhhhhhhhHhhcC----chhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH-
Confidence 1223333333321 12211 2567889999985 3467777787887777889999999998887654321
Q ss_pred hHHH---HHHHHHhhhcCCCChHHHhhHHHHHHHhcC
Q 004132 458 PQQM---IQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (772)
Q Consensus 458 ~~~~---v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~ 491 (772)
..+- +.-+|+-|..| .|+-=||-|.-..+=|..
T Consensus 835 s~dYvy~itPlleDAltD-rD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 835 SLDYVYSITPLLEDALTD-RDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHHHHHhhHHHHhhhcc-cchHHHHHHHHHHHHHhc
Confidence 2222 33345666654 788888888776665554
No 45
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.032 Score=64.15 Aligned_cols=436 Identities=17% Similarity=0.246 Sum_probs=233.9
Q ss_pred HHHHHHHHHhccCCCcHHHH-HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 004132 27 KLVYLYLINYAKSQPDLAIL-AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICV 105 (772)
Q Consensus 27 rl~YL~l~~~~~~~~dl~lL-~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l 105 (772)
||.|+|+.-| +=|...| ++|- .+.-+-+.-.|==+++..|-+ .+.++...+...|++-|.+.||-----|..|+
T Consensus 61 KLlyI~llg~---dIdFGhmEaV~L-Lss~kysEKqIGYl~is~L~n-~n~dl~klvin~iknDL~srn~~fv~LAL~~I 135 (938)
T KOG1077|consen 61 KLLYIYLLGY---DIDFGHMEAVNL-LSSNKYSEKQIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNPTFVCLALHCI 135 (938)
T ss_pred HHHHHHHhcC---ccccchHHHHHH-hhcCCccHHHHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCcHHHHHHHHHH
Confidence 5667766442 2233222 3332 222233444565566666544 34778888889999999999998888999999
Q ss_pred HHHHhhccccccccchHHHHHHhhc--CCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChh----HHH
Q 004132 106 AKLYDINAELVEDRGFLESLKDLIS--DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEW----GQV 179 (772)
Q Consensus 106 ~kl~~~~p~~~~~~~~~~~L~~lL~--D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew----~qv 179 (772)
+.+.. -|..+. |.+.+.++|- +..+.|.-.|..+|..+-...|+. +.. ..-..+++..|+|.+ . .-+
T Consensus 136 ~niG~--re~~ea--~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl-~~~-~~W~~riv~LL~D~~-~gv~ta~~ 208 (938)
T KOG1077|consen 136 ANIGS--REMAEA--FADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL-VNP-GEWAQRIVHLLDDQH-MGVVTAAT 208 (938)
T ss_pred Hhhcc--HhHHHH--hhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc-cCh-hhHHHHHHHHhCccc-cceeeehH
Confidence 98873 344443 6777788875 444566555555555666555431 111 123556666665544 2 245
Q ss_pred HHHHHHhccccCCHHHHH----HHHHHHhH----hhc------CCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccc
Q 004132 180 FILDALSRYKAADAREAE----NIVERVTP----RLQ------HANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPP 245 (772)
Q Consensus 180 ~iL~~L~~~~~~~~~e~~----~il~~v~~----~L~------~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~ 245 (772)
-++.+|.++.|.+-..+- ..+.++.. -++ --+|=.....+|++..+ |..+++....+ +...
T Consensus 209 sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r~~----l~ev 283 (938)
T KOG1077|consen 209 SLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTRAR----LNEV 283 (938)
T ss_pred HHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHHHH----HHHH
Confidence 677788777654322110 11111110 000 11233333444544432 43334332222 1122
Q ss_pred hhhccCC-----------chhHHHHHH-HHHHHHHhhC--hhhhhhhccee-eeccCCcHhHHHHHHHHHHHhcccccHH
Q 004132 246 LVTLLSA-----------EPEIQYVAL-RNINLIVQRR--PTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDRNID 310 (772)
Q Consensus 246 L~~Lls~-----------~~~iryvaL-~~l~~i~~~~--p~~~~~~~~if-~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~ 310 (772)
|-++|++ ..|.+-.+| ++|..+...+ |+++.+....+ ..+.+..+.||-.+||-+..|++.+-..
T Consensus 284 l~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~ 363 (938)
T KOG1077|consen 284 LERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSI 363 (938)
T ss_pred HHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchH
Confidence 2233321 234444444 4555554433 45555443321 1123444669999999999999886666
Q ss_pred HHHHHHHH----hhh-hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCc---cc
Q 004132 311 QVLLEFKE----YAT-EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP---NT 382 (772)
Q Consensus 311 ~Il~EL~~----y~~-~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p---~~ 382 (772)
..++.=++ -+. +.|..+|++++.-+...+.. +.++.+|+-|++.|.++...+.+|.+.-+.-+-.+|. ++
T Consensus 364 davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~W 441 (938)
T KOG1077|consen 364 DAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSW 441 (938)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcch
Confidence 65554333 233 78999999999887665543 5678899999999999887788887766655656654 24
Q ss_pred HHHHHHHHHHhcccCChHHHHHHHH--------------HHHhhhcccc-------CCHHHHHHHH---hhhCCCCCHHH
Q 004132 383 YESIIATLCESLDTLDEPEAKASMI--------------WIIGEYAERI-------DNADELLESF---LESFPEEPAQV 438 (772)
Q Consensus 383 ~~~ii~~L~~~l~~~~~p~a~~~~i--------------wilGEy~~~i-------~~~~~~L~~l---~~~f~~e~~~v 438 (772)
|-.++-+|++.-.+.-+.++-..++ --+-||-+.. .-+.++|..| +...+..++.+
T Consensus 442 yVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~ 521 (938)
T KOG1077|consen 442 YVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAV 521 (938)
T ss_pred hHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHH
Confidence 5555555555443332333322122 2222222111 1122333332 33344556777
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHH-HHHHHhhhcCCCChHHHhhHHHHHHH
Q 004132 439 QLQLLTATVKLFLKKPTEGPQQMI-QVVLNNATVETDNPDLRDRAYIYWRL 488 (772)
Q Consensus 439 q~~lLta~~Kl~~~~p~~~~~~~v-~~vl~~~~~~s~~~dvrdRA~~y~~L 488 (772)
|..+|. -|++...|. ++.++ ...++.+ . .-||++++---..+.
T Consensus 522 qFsllh--~K~~~~s~~--tr~lLLtTyiKl~-n--l~PEi~~~v~~vFq~ 565 (938)
T KOG1077|consen 522 QFSLLH--EKLHLCSPV--TRALLLTTYIKLI-N--LFPEIKSNVQKVFQL 565 (938)
T ss_pred HHHHHH--HHhccCChh--HHHHHHHHHHHHH-h--hChhhhHHHHHHHHh
Confidence 776663 466555443 44443 3334432 1 348888776554444
No 46
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.00081 Score=76.21 Aligned_cols=345 Identities=15% Similarity=0.088 Sum_probs=200.2
Q ss_pred CCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChh-----hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc
Q 004132 39 SQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD-----KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA 113 (772)
Q Consensus 39 ~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~-----ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p 113 (772)
+++.-..+..+.=.+-.......+|-.++..+..++.. ..-+++..-+.....|.++.||+.|+.+++.+.. .-
T Consensus 151 ~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~ 229 (823)
T KOG2259|consen 151 EEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GF 229 (823)
T ss_pred chhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cc
Confidence 44444555555555444555556677777777777632 3446666668888999999999999999998875 22
Q ss_pred ccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC------cccccHHHHHHHHHHhhcCChhHHHHHHHHHhc
Q 004132 114 ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP------IFEITSHTLSKLLTALNECTEWGQVFILDALSR 187 (772)
Q Consensus 114 ~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~------~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~ 187 (772)
.+-. .......++++|.+..|..+|+-++.-.....+.+ ..++....+.++|..+.|.+==.++..-++|..
T Consensus 230 kL~~--~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~ 307 (823)
T KOG2259|consen 230 KLSK--ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGE 307 (823)
T ss_pred cccH--HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhch
Confidence 2211 24567788999999999999998887665544221 234566788899999887653346666677766
Q ss_pred cccCCHHHHHHHHHHHh-----Hh-----hcCCCHHHHHHHHHHH--HHhhhhcCChH----HHHHHHHhcccchhhccC
Q 004132 188 YKAADAREAENIVERVT-----PR-----LQHANCAVVLSAVKMI--LQQMELITSTD----VVRNLCKKMAPPLVTLLS 251 (772)
Q Consensus 188 ~~~~~~~e~~~il~~v~-----~~-----L~~~n~aVv~eaik~i--~~~~~~i~~~~----~~~~l~~~~~~~L~~Lls 251 (772)
+..-+ ++++.+.+ .+ ..|.-+.-+++.-..- -.|....++++ ...-+..-+.+.++.=+.
T Consensus 308 ~~~vS----ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlE 383 (823)
T KOG2259|consen 308 FEQVS----EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLE 383 (823)
T ss_pred HHHhH----HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeech
Confidence 64322 23332221 11 1122222221110000 00101111111 111000012233333333
Q ss_pred C-chhHHHHHHHHHHHHHhhChhhhhhhccee-eeccCCcHhHHHHHHHHHHHhcccccH-HHHHHHHHHhhhhccHHHH
Q 004132 252 A-EPEIQYVALRNINLIVQRRPTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDRNI-DQVLLEFKEYATEVDVDFV 328 (772)
Q Consensus 252 ~-~~~iryvaL~~l~~i~~~~p~~~~~~~~if-~~~~~d~~~Ik~~kL~lL~~L~n~~Nv-~~Il~EL~~y~~~~d~~~~ 328 (772)
. -.|+|-.|..++..++..+|.+-..-+..+ .-.+|+..-||..++..|..+++.-.+ ++.++.+++-+.+..+++|
T Consensus 384 DEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvR 463 (823)
T KOG2259|consen 384 DEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVR 463 (823)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHH
Confidence 3 358999999999999999997644333211 223455577999999999998764222 2455556666777777776
Q ss_pred HHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHh
Q 004132 329 RKAVRAIGRCAIKLE--RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCES 393 (772)
Q Consensus 329 ~~~v~aIg~la~k~~--~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~ 393 (772)
..+-.-++ ++ +++ ...+.|++-|++.|..-. .=.++++..+.+|-++++.+...+...+.+.
T Consensus 464 e~l~elL~-~~-~~~d~~~i~m~v~~lL~~L~kyP-qDrd~i~~cm~~iGqnH~~lv~s~m~rfl~k 527 (823)
T KOG2259|consen 464 EALRELLK-NA-RVSDLECIDMCVAHLLKNLGKYP-QDRDEILRCMGRIGQNHRRLVLSNMGRFLEK 527 (823)
T ss_pred HHHHHHHH-hc-CCCcHHHHHHHHHHHHHHhhhCC-CCcHHHHHHHHHHhccChhhHHHHHHHHHHh
Confidence 55444333 22 222 233455555555444221 1356778888888888887766666666643
No 47
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.94 E-value=0.002 Score=70.58 Aligned_cols=217 Identities=22% Similarity=0.292 Sum_probs=146.1
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHH
Q 004132 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (772)
Q Consensus 46 L~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L 125 (772)
..+..+.+.+.++++.+|..|...++.+...+.++. +.+++.|.++.||..|+.+++++. +|+. .+.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~~----l~~~l~d~~~~vr~~a~~aLg~~~--~~~a------~~~l 110 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPL----LRELLSDEDPRVRDAAADALGELG--DPEA------VPPL 110 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHHH----HHHHhcCCCHHHHHHHHHHHHccC--ChhH------HHHH
Confidence 356788999999999999999999999998777766 889999999999999999998875 4443 4556
Q ss_pred HHhhc-CCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHh
Q 004132 126 KDLIS-DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVT 204 (772)
Q Consensus 126 ~~lL~-D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~ 204 (772)
..+|. |.|..|+..|..+|..+.... .+..++..+.+...+.+...+ +.
T Consensus 111 i~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~---------~~----------- 160 (335)
T COG1413 111 VELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAAL---------DA----------- 160 (335)
T ss_pred HHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhc---------cc-----------
Confidence 66666 899999999999999886543 255566666554433311111 00
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhChhhhhhhcceee
Q 004132 205 PRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFF 283 (772)
Q Consensus 205 ~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~ 283 (772)
+ -..+...++..+..+ .++... +.+..++ ..+..+|..+...+..+......+... .+.
T Consensus 161 ~-----~~~~r~~a~~~l~~~----~~~~~~--------~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~---l~~ 220 (335)
T COG1413 161 A-----LLDVRAAAAEALGEL----GDPEAI--------PLLIELLEDEDADVRRAAASALGQLGSENVEAADL---LVK 220 (335)
T ss_pred h-----HHHHHHHHHHHHHHc----CChhhh--------HHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHH---HHH
Confidence 0 005666677666652 344332 2334455 356688888888888887664221111 112
Q ss_pred eccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHH
Q 004132 284 CKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (772)
Q Consensus 284 ~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~ 328 (772)
...++...+|.+++..|..+..++....++ .++.+.+...+
T Consensus 221 ~~~~~~~~vr~~~~~~l~~~~~~~~~~~l~----~~l~~~~~~~~ 261 (335)
T COG1413 221 ALSDESLEVRKAALLALGEIGDEEAVDALA----KALEDEDVILA 261 (335)
T ss_pred HhcCCCHHHHHHHHHHhcccCcchhHHHHH----HHHhccchHHH
Confidence 335666889999999998888877766665 34444444443
No 48
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.94 E-value=0.00051 Score=76.91 Aligned_cols=211 Identities=15% Similarity=0.066 Sum_probs=130.2
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~ 126 (772)
++..+.+-+.|.++.+|.-|.+.|+.|+.+..... +.++|.|.+|.||..++-++.. ...+ -.+.+.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~----L~~~L~~~~p~vR~aal~al~~-r~~~--------~~~~L~ 153 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW----LEPLLAASEPPGRAIGLAALGA-HRHD--------PGPALE 153 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH----HHHHhcCCChHHHHHHHHHHHh-hccC--------hHHHHH
Confidence 36888888899999999999999999998877766 6777789999999887755444 2222 246788
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHh
Q 004132 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR 206 (772)
Q Consensus 127 ~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~ 206 (772)
.+|+|.|+.|...|+.+|.++.... .+..|...+.+.++=.+.-.+..+..++. +++-. .+...
T Consensus 154 ~~L~d~d~~Vra~A~raLG~l~~~~----------a~~~L~~al~d~~~~VR~aA~~al~~lG~---~~A~~---~l~~~ 217 (410)
T TIGR02270 154 AALTHEDALVRAAALRALGELPRRL----------SESTLRLYLRDSDPEVRFAALEAGLLAGS---RLAWG---VCRRF 217 (410)
T ss_pred HHhcCCCHHHHHHHHHHHHhhcccc----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC---HhHHH---HHHHH
Confidence 8888999999999999998886432 23445555667777666666666666542 22222 22222
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeecc
Q 004132 207 LQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKY 286 (772)
Q Consensus 207 L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~ 286 (772)
....+..+...+.. ++.. ..++.. ...|..++. ++.+|..++..+..+.. |..+..-+. . -
T Consensus 218 ~~~~g~~~~~~l~~-~lal---~~~~~a--------~~~L~~ll~-d~~vr~~a~~AlG~lg~--p~av~~L~~---~-l 278 (410)
T TIGR02270 218 QVLEGGPHRQRLLV-LLAV---AGGPDA--------QAWLRELLQ-AAATRREALRAVGLVGD--VEAAPWCLE---A-M 278 (410)
T ss_pred HhccCccHHHHHHH-HHHh---CCchhH--------HHHHHHHhc-ChhhHHHHHHHHHHcCC--cchHHHHHH---H-h
Confidence 22333333322222 2221 123322 222344443 35588888888887753 333222111 1 1
Q ss_pred CCcHhHHHHHHHHHHHhccc
Q 004132 287 NDPIYVKMEKLEIMIKLASD 306 (772)
Q Consensus 287 ~d~~~Ik~~kL~lL~~L~n~ 306 (772)
+|+ ++++.+-+.+-+|+--
T Consensus 279 ~d~-~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 279 REP-PWARLAGEAFSLITGM 297 (410)
T ss_pred cCc-HHHHHHHHHHHHhhCC
Confidence 222 3888888888888764
No 49
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.94 E-value=0.00091 Score=79.21 Aligned_cols=345 Identities=19% Similarity=0.258 Sum_probs=201.8
Q ss_pred CCCCHHHHhHHHHHhcCCChhh------hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHH--hhccccccccchHHHHHH
Q 004132 56 QDPNPLIRALAVRTMGCIRVDK------ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLY--DINAELVEDRGFLESLKD 127 (772)
Q Consensus 56 ~~~np~iralALrtl~~I~~~e------i~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~--~~~p~~~~~~~~~~~L~~ 127 (772)
+..+..+| .|++.|.++.... .-..+++.+.++|...+..+.-.|+.++-|+- ..+.+.+...+.++.|.+
T Consensus 260 ~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~k 338 (708)
T PF05804_consen 260 RKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLK 338 (708)
T ss_pred HHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHH
Confidence 45666777 6677787776332 12345677889999999888777777777764 345555556789999999
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhCCCCccc-ccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHH----HHHHHHH
Q 004132 128 LISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE----AENIVER 202 (772)
Q Consensus 128 lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~-l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e----~~~il~~ 202 (772)
++..++..++-.|+.+|+.++.... ..-. +..+.+.+|+..|.+. .+. ...+.+|......+... ..+.++.
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~d~-~~~-~val~iLy~LS~dd~~r~~f~~TdcIp~ 415 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLKDP-NFR-EVALKILYNLSMDDEARSMFAYTDCIPQ 415 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhCCC-chH-HHHHHHHHHhccCHhhHHHHhhcchHHH
Confidence 9999999999999999998865421 1111 1112355666666543 333 34667776655432211 0123444
Q ss_pred HhHh-hcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHH-hcccchhhc-cC-CchhHHHHHHHHHHHHHhhChh---hh
Q 004132 203 VTPR-LQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTL-LS-AEPEIQYVALRNINLIVQRRPT---IL 275 (772)
Q Consensus 203 v~~~-L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~-~~~~~L~~L-ls-~~~~iryvaL~~l~~i~~~~p~---~~ 275 (772)
+... +.+.+..|-.+++.+.+++.- ++...+.++. +-.+.|+.. ++ ++ -+.++.|..|.+..+. .|
T Consensus 416 L~~~Ll~~~~~~v~~eliaL~iNLa~---~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~f 488 (708)
T PF05804_consen 416 LMQMLLENSEEEVQLELIALLINLAL---NKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKELF 488 (708)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHhc---CHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHHH
Confidence 4443 455666676777777766532 3333333332 112222221 12 23 2344566666665532 34
Q ss_pred hhhccee--eeccCCcHhHHHHHHHHHHHhccc-ccHHHHHHH--HHHhhhh------ccHHHHHHHHHHHHHHHHhhhh
Q 004132 276 AHEIKVF--FCKYNDPIYVKMEKLEIMIKLASD-RNIDQVLLE--FKEYATE------VDVDFVRKAVRAIGRCAIKLER 344 (772)
Q Consensus 276 ~~~~~if--~~~~~d~~~Ik~~kL~lL~~L~n~-~Nv~~Il~E--L~~y~~~------~d~~~~~~~v~aIg~la~k~~~ 344 (772)
.+++.-+ .+...++.....+.|-+|..|..+ -++..++++ |..|+.+ .++++.-++|..+|.+|.. +.
T Consensus 489 ~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~ 567 (708)
T PF05804_consen 489 VDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PE 567 (708)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HH
Confidence 4443311 234456678888999999998744 488888876 4555532 4678889999999987742 22
Q ss_pred hH-----HHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHhCcccHHHH------HHHHHHhcccCChHHHHH---HHHH
Q 004132 345 AA-----ERCISVLLELIKIKV--NYVVQEAIIVIKDIFRRYPNTYESI------IATLCESLDTLDEPEAKA---SMIW 408 (772)
Q Consensus 345 ~~-----~~~vd~Ll~ll~~~~--~~v~~e~i~~l~~i~~~~p~~~~~i------i~~L~~~l~~~~~p~a~~---~~iw 408 (772)
.+ ..+++.|++++..+. +.++-.++.++.++++. ++.++.+ +..|++.+.+ ..++++. .+.-
T Consensus 568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d-~N~~ir~~~d~~Ld 645 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHD-KNAEIRKVCDNALD 645 (708)
T ss_pred HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 22 245888999988665 45555666677776654 4444333 3344444444 2333332 2345
Q ss_pred HHhhhc
Q 004132 409 IIGEYA 414 (772)
Q Consensus 409 ilGEy~ 414 (772)
|++||.
T Consensus 646 ii~e~d 651 (708)
T PF05804_consen 646 IIAEYD 651 (708)
T ss_pred HHHHhC
Confidence 555554
No 50
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.92 E-value=0.0029 Score=69.40 Aligned_cols=110 Identities=21% Similarity=0.245 Sum_probs=85.7
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhh
Q 004132 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC 89 (772)
Q Consensus 10 lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~ 89 (772)
....+++.+.+++...|.-+..++..+... -++..+.+-+.|.++.+|..|..++|.++.++.++.+...+..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~- 116 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE------EAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN- 116 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH------HHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc-
Confidence 345566788888888887777775544322 3668889999999999999999999999999988885544444
Q ss_pred hCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhH
Q 004132 90 LKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (772)
Q Consensus 90 L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V 136 (772)
|.+.+||.+|+.+++++.... -+..+..++.|.+..+
T Consensus 117 --d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~ 153 (335)
T COG1413 117 --DENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGS 153 (335)
T ss_pred --CCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhh
Confidence 899999999999999997543 2566777888877555
No 51
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=97.85 E-value=2.9e-05 Score=71.30 Aligned_cols=91 Identities=20% Similarity=0.266 Sum_probs=65.1
Q ss_pred CCCCCCeEEEEEEee--eCCeeEEEEEEEecCCCCccccceee---ccCccCcccCCCCCCCcCCCCCeeeEEEeeeecC
Q 004132 641 ASTGQGLQIGAELTR--QDGQVFYSMLFENNTQTPLDGFMIQF---NKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQ 715 (772)
Q Consensus 641 ~~~~~gl~i~~~~~~--~~~~~~~~~~~tN~~~~~~~~f~~q~---n~n~fgl~~~~~~~~~~l~p~~~~~~~~~l~~~~ 715 (772)
.++.+||+|.+.+.+ .+++..|.++|+|++..+|++|.+|+ +...+++.|.+ -..|+||+.++..+.+.+ .
T Consensus 5 ~ye~~~l~I~~~~~~~~~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s---~~~i~p~~~i~Q~~~v~~-~ 80 (115)
T PF02883_consen 5 LYEDNGLQIGFKSEKSPNPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPS---SSTIPPGQQITQVIKVEN-S 80 (115)
T ss_dssp EEEETTEEEEEEEEECCETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS----SSB-TTTEEEEEEEEEE-S
T ss_pred EEeCCCEEEEEEEEecCCCCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCC---CCeeCCCCeEEEEEEEEE-e
Confidence 357889999999998 89999999999999999999999999 44555666553 236777999999999988 4
Q ss_pred CCC-CCCCCcchhhhhhcCCC
Q 004132 716 NMS-AGPPSSLLQVAVKNNQQ 735 (772)
Q Consensus 716 ~~~-~~~~~~~lqvAik~n~~ 735 (772)
+.. +..++..+++.|+-+.+
T Consensus 81 ~~~~~~~~~l~~~~~vsy~~~ 101 (115)
T PF02883_consen 81 PFSEPTPKPLKPRLRVSYNVG 101 (115)
T ss_dssp S-BSTTSSTTEEEEEEEEEET
T ss_pred ecccCCCCCcCeEEEEEEEEC
Confidence 432 33444556666655443
No 52
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.82 E-value=0.013 Score=69.08 Aligned_cols=330 Identities=18% Similarity=0.235 Sum_probs=195.8
Q ss_pred hHHHHHhhcCCCcc-----hHHHHHHHHHHhc----cCCCcHHHHHHHHHHhhcC--CCCHHHHhHHHHHhcCCCh---h
Q 004132 11 FTDVVNCMQTENLE-----LKKLVYLYLINYA----KSQPDLAILAVNTFVKDSQ--DPNPLIRALAVRTMGCIRV---D 76 (772)
Q Consensus 11 f~~vi~l~~s~~~~-----lKrl~YL~l~~~~----~~~~dl~lL~iNtl~kDl~--~~np~iralALrtl~~I~~---~ 76 (772)
|...+.+++.+-++ +-|=+|..+..++ ..-|+.+--.+-.+.+|++ ..|.-+|-+|+-++|.++- .
T Consensus 773 y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~ 852 (1233)
T KOG1824|consen 773 YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL 852 (1233)
T ss_pred HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC
Confidence 55566666655443 4444555443333 2234444455667888887 4678999999999999972 2
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcc
Q 004132 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (772)
Q Consensus 77 ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~ 156 (772)
.-...+...+.+++++++.-|+++|+.|++.+---+- +.|++.+..... .+|-=..-.+.+|.|+.......
T Consensus 853 s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl-----~~yLpfil~qi~-sqpk~QyLLLhSlkevi~~~svd-- 924 (1233)
T KOG1824|consen 853 SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNL-----PKYLPFILEQIE-SQPKRQYLLLHSLKEVIVSASVD-- 924 (1233)
T ss_pred CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCch-----HhHHHHHHHHHh-cchHhHHHHHHHHHHHHHHhccc--
Confidence 2334455578999999999999999999999864221 136666655543 34555555566677765543221
Q ss_pred cccHHHHHHHHHHhh---cC-ChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCH---HHHHHHHHHHHHhhhhc
Q 004132 157 EITSHTLSKLLTALN---EC-TEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANC---AVVLSAVKMILQQMELI 229 (772)
Q Consensus 157 ~l~~~~~~~Ll~~L~---~~-~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~---aVv~eaik~i~~~~~~i 229 (772)
...+.+.++...|- +| .+..+-.+-++|.++.--++ +.++.++..++.+..+ +.+..|+|..+.
T Consensus 925 -~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep---esLlpkL~~~~~S~a~~~rs~vvsavKfsis----- 995 (1233)
T KOG1824|consen 925 -GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP---ESLLPKLKLLLRSEASNTRSSVVSAVKFSIS----- 995 (1233)
T ss_pred -hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh---HHHHHHHHHHhcCCCcchhhhhhheeeeeec-----
Confidence 22334444444442 33 35567777888888776555 3455666656655544 455555554432
Q ss_pred CChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhChhhhhh-----------------h------cceeeec
Q 004132 230 TSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAH-----------------E------IKVFFCK 285 (772)
Q Consensus 230 ~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~~~~~-----------------~------~~if~~~ 285 (772)
..+.-+..+.++.++....++ ..|.++|-+||..++..+...|.+++. + +.-|.--
T Consensus 996 d~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~ 1075 (1233)
T KOG1824|consen 996 DQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHT 1075 (1233)
T ss_pred CCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCcccc
Confidence 123333444444444445555 579999999999999988877765431 0 1124444
Q ss_pred cCCcHhHHHHHHHHHHHhccc----ccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 004132 286 YNDPIYVKMEKLEIMIKLASD----RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK 358 (772)
Q Consensus 286 ~~d~~~Ik~~kL~lL~~L~n~----~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~ 358 (772)
-||...+|..+.|-+|.|.+. -++.+-+.-+..=+.+. .+++--..--+.++|...|...-.-+|.+++=|+
T Consensus 1076 VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr 1151 (1233)
T KOG1824|consen 1076 VDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLR 1151 (1233)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 567789999999999998643 33333332222112211 2222222334567777777666666666666544
No 53
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.81 E-value=0.0018 Score=76.07 Aligned_cols=285 Identities=17% Similarity=0.232 Sum_probs=186.2
Q ss_pred CcchHHHHHHHHHHhccCC-----CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh---hhhHHHHHHH--------
Q 004132 22 NLELKKLVYLYLINYAKSQ-----PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV---DKITEYLCDP-------- 85 (772)
Q Consensus 22 ~~~lKrl~YL~l~~~~~~~-----~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~---~ei~~~l~~~-------- 85 (772)
+-..|-++.|-++.+.+.. +|+- .++.+.++++++.+++.|--+||++.+ ++..+.++..
T Consensus 832 ~~~ikvfa~LslGElgr~~~~s~~~e~~----~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~Q 907 (1233)
T KOG1824|consen 832 SDSIKVFALLSLGELGRRKDLSPQNELK----DTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQ 907 (1233)
T ss_pred chhHHHHHHhhhhhhccCCCCCcchhhH----HHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhH
Confidence 3456777777777776653 3332 256778899999999999999999876 2222222111
Q ss_pred ------HH-----------------------hhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhH
Q 004132 86 ------LQ-----------------------RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (772)
Q Consensus 86 ------v~-----------------------~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V 136 (772)
++ +-.......+|--.+.|++|+...+|+. +.+.|+..+....+..
T Consensus 908 yLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes-----LlpkL~~~~~S~a~~~ 982 (1233)
T KOG1824|consen 908 YLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES-----LLPKLKLLLRSEASNT 982 (1233)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH-----HHHHHHHHhcCCCcch
Confidence 11 1112244567888999999999999986 7899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHH
Q 004132 137 VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVL 216 (772)
Q Consensus 137 v~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~ 216 (772)
++.++.++--....+|.++-.+..+.+-..+..+.+.+.-.+-..|..+.......+.-..++++.+.|.|-+- ..|.-
T Consensus 983 rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e-Tkvrk 1061 (1233)
T KOG1824|consen 983 RSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE-TKVRK 1061 (1233)
T ss_pred hhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh-hhhhH
Confidence 99998888655445565555566777888888888998877766777776665555667778888888776331 12222
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCCchhHHHHHHHHHHHHHhhC-----hhhhhhhcceeeeccCCcHh
Q 004132 217 SAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRR-----PTILAHEIKVFFCKYNDPIY 291 (772)
Q Consensus 217 eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~-----p~~~~~~~~if~~~~~d~~~ 291 (772)
|-||.+ .++ |+-.-..+.-++|-.|.+++..++..- +.-|..|+. .--.|-.+
T Consensus 1062 elIreV------------------eMG-PFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~---~GL~Dhyd 1119 (1233)
T KOG1824|consen 1062 ELIREV------------------EMG-PFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVE---DGLEDHYD 1119 (1233)
T ss_pred hhhhhh------------------ccc-CccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH---hhcchhhH
Confidence 322222 122 222233445689999999998887542 323333332 22345578
Q ss_pred HHHHHHHHHHHhcc--cccHHHHHHHHHHhhhhc----------------cHHHHHHHHHHHHHH
Q 004132 292 VKMEKLEIMIKLAS--DRNIDQVLLEFKEYATEV----------------DVDFVRKAVRAIGRC 338 (772)
Q Consensus 292 Ik~~kL~lL~~L~n--~~Nv~~Il~EL~~y~~~~----------------d~~~~~~~v~aIg~l 338 (772)
||+...-+|.+|++ ++-|-+-++.+.|-++.. ..+++|.++|++..+
T Consensus 1120 iKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L 1184 (1233)
T KOG1824|consen 1120 IKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAAL 1184 (1233)
T ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999875 555555555555544321 245666666666544
No 54
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.083 Score=64.25 Aligned_cols=148 Identities=16% Similarity=0.234 Sum_probs=114.9
Q ss_pred CCccchhHHHHHhhcCCCc-----chHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhH
Q 004132 5 KDVSSLFTDVVNCMQTENL-----ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKIT 79 (772)
Q Consensus 5 ~Dvs~lf~~vi~l~~s~~~-----~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~ 79 (772)
|....++-.+++-+.+... ..+|.+-.++..++..-|-+++--.+.|.+-+.+.+...|..-+..++++...++-
T Consensus 266 y~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~ 345 (1251)
T KOG0414|consen 266 YGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELR 345 (1251)
T ss_pred cccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhc
Confidence 4456778888887766544 46788889999999999999988888999878888999999999999887533322
Q ss_pred ------------HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc-cchHHHHHHhhcCCChhHHHHHHHHHHH
Q 004132 80 ------------EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-RGFLESLKDLISDNNPMVVANAVAALAE 146 (772)
Q Consensus 80 ------------~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~-~~~~~~L~~lL~D~d~~Vv~~av~aL~e 146 (772)
..+.+.+..-+.|-++|||-++.....|+++....-... ..++......|.|++..|+.+|+..+.-
T Consensus 346 d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~ 425 (1251)
T KOG0414|consen 346 DEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSS 425 (1251)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 236677788889999999999999999999876544332 1233444556789999999999999988
Q ss_pred HHhhCC
Q 004132 147 IEENSS 152 (772)
Q Consensus 147 I~~~~~ 152 (772)
+..+.|
T Consensus 426 ~L~~~P 431 (1251)
T KOG0414|consen 426 LLDRHP 431 (1251)
T ss_pred HHhcCC
Confidence 876654
No 55
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0058 Score=70.86 Aligned_cols=267 Identities=14% Similarity=0.202 Sum_probs=153.3
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHH
Q 004132 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIV 200 (772)
Q Consensus 121 ~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il 200 (772)
+.+.+..+|..++-+|..-|..++..+....+.. +.-....++-+|...+-+.-|.-+.+|.=++.-.|.-. ..+
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~-l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v----~~c 320 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE-LAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV----TVC 320 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh-cchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc----ccc
Confidence 5666777777777777777666665554322211 11122223333332222223333333333322222111 001
Q ss_pred -HHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCC-chhHHHHHHHHHHHHHhhChhhhhhh
Q 004132 201 -ERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRRPTILAHE 278 (772)
Q Consensus 201 -~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~-~~~iryvaL~~l~~i~~~~p~~~~~~ 278 (772)
..+.++....|.++-.=|+-++++- ..++.+..+. .++..+.+. +.|.+.++.+++..++.++|..-.-.
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKT----G~e~sv~rLm----~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~ 392 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKT----GTESSVDRLM----KQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVM 392 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHh----cchhHHHHHH----HHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHH
Confidence 1233445566666666677766652 2344444333 233345543 56788888888888888887432211
Q ss_pred ccee-eeccCC-cHhHHHHHHHHHHHhc--ccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh--hhHHHHHHH
Q 004132 279 IKVF-FCKYND-PIYVKMEKLEIMIKLA--SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE--RAAERCISV 352 (772)
Q Consensus 279 ~~if-~~~~~d-~~~Ik~~kL~lL~~L~--n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~--~~~~~~vd~ 352 (772)
+..+ ..+.++ --.-|+-..|.+..++ +++.-+..+..|.+|+.++ +|...+++-++.++.-.| +..+.|+..
T Consensus 393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~~Pskyir~ 470 (865)
T KOG1078|consen 393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAPNPSKYIRF 470 (865)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCCCcchhhHH
Confidence 1111 111222 2446677777777765 4566677888888888865 466777777777776543 455678888
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHHH
Q 004132 353 LLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAK 403 (772)
Q Consensus 353 Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~ 403 (772)
+...+-.....|+.+++..+.++....+..+..+...|.+++.+ .+.+.+
T Consensus 471 iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D-~DdevR 520 (865)
T KOG1078|consen 471 IYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLND-SDDEVR 520 (865)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcC-chHHHH
Confidence 88888888888888888888888777777788888777777755 233443
No 56
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.70 E-value=0.0028 Score=66.44 Aligned_cols=226 Identities=17% Similarity=0.236 Sum_probs=145.7
Q ss_pred HHHhhhC-CCChHHHHHHHHHHHHHH--hhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHH
Q 004132 85 PLQRCLK-DDDPYVRKTAAICVAKLY--DINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (772)
Q Consensus 85 ~v~~~L~-d~~pyVRK~Aa~~l~kl~--~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~ 161 (772)
.+..+|. ..+|+++.+|..+++..- ..+.+.+.+.|-++.+..+|.++++.|.-.|+.++.-++.... .......
T Consensus 16 ~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e--n~~~Ik~ 93 (254)
T PF04826_consen 16 KLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE--NQEQIKM 93 (254)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh--hHHHHHH
Confidence 3556666 478999999999988863 3455677777888999999999999999999999887754322 1222334
Q ss_pred HHHHHHHHhhc--CChhHHHHHHHHHhccccCCH--HHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHH
Q 004132 162 TLSKLLTALNE--CTEWGQVFILDALSRYKAADA--REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRN 237 (772)
Q Consensus 162 ~~~~Ll~~L~~--~~ew~qv~iL~~L~~~~~~~~--~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~ 237 (772)
.+.++|..+.. ++...|..-|++|..+.-.+. ......+..+..+|.+.+..+...+.|+++++. .++...+.
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS---~np~~~~~ 170 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS---ENPDMTRE 170 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc---cCHHHHHH
Confidence 56666665533 356789999999998865432 222344556677888888899999999999864 36666555
Q ss_pred HH-HhcccchhhccCC--chhHHHHHHHHHHHHHhhC-hhhhhhhccee-eeccCCcHhHHHHHHHHHHHhcccccHHHH
Q 004132 238 LC-KKMAPPLVTLLSA--EPEIQYVALRNINLIVQRR-PTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDRNIDQV 312 (772)
Q Consensus 238 l~-~~~~~~L~~Lls~--~~~iryvaL~~l~~i~~~~-p~~~~~~~~if-~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~I 312 (772)
+. .+....++.|+++ +.++-.-+|.-+..|.... ++. ..+ .-.++.+ -|+.+-.+ .+..
T Consensus 171 Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~-----~~~~~~~~~~~---------~L~~~~~e--~~~~ 234 (254)
T PF04826_consen 171 LLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEA-----YVFVQDDFSED---------SLFSLFGE--SSQL 234 (254)
T ss_pred HHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCccc-----ceeccccCCch---------hHHHHHcc--HHHH
Confidence 43 3455566777753 4566777776666664322 110 000 0111111 12222222 3456
Q ss_pred HHHHHHhhhhccHHHHHHH
Q 004132 313 LLEFKEYATEVDVDFVRKA 331 (772)
Q Consensus 313 l~EL~~y~~~~d~~~~~~~ 331 (772)
.++|..-+...|++++.++
T Consensus 235 ~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 235 AKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHHcCCCHHHhhhc
Confidence 6677776677788887664
No 57
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.69 E-value=0.011 Score=66.26 Aligned_cols=261 Identities=18% Similarity=0.105 Sum_probs=155.3
Q ss_pred hhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhh-CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcC
Q 004132 53 KDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCL-KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD 131 (772)
Q Consensus 53 kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L-~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D 131 (772)
.|+..=++-+++. |..|.-++ +...+. +...| .|.++-|+..|+.++.... .| ..++.|...|.|
T Consensus 32 ~~la~ldeRL~Ah-LdgL~~~G-~~a~~~----L~~aL~~d~~~ev~~~aa~al~~~~--~~------~~~~~L~~~L~d 97 (410)
T TIGR02270 32 EDLAELEERLLAH-VDGLVLAG-KAATEL----LVSALAEADEPGRVACAALALLAQE--DA------LDLRSVLAVLQA 97 (410)
T ss_pred HHHHhHHHHHHHH-HHHHHHhh-HhHHHH----HHHHHhhCCChhHHHHHHHHHhccC--Ch------HHHHHHHHHhcC
Confidence 3444444444444 55555554 333333 55556 4677888877766654321 11 126778888888
Q ss_pred CChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCC
Q 004132 132 NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHAN 211 (772)
Q Consensus 132 ~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n 211 (772)
.+++|..+++.+|.+|... .....|+..|.+.+++.+..++..+..... + -.+.+.+.|++.+
T Consensus 98 ~~~~vr~aaa~ALg~i~~~----------~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~------~~~~L~~~L~d~d 160 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGR----------QAEPWLEPLLAASEPPGRAIGLAALGAHRH-D------PGPALEAALTHED 160 (410)
T ss_pred CCHHHHHHHHHHHhcCCch----------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-C------hHHHHHHHhcCCC
Confidence 8888888888888776432 235566666777888888877777765432 1 1356777788999
Q ss_pred HHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcH
Q 004132 212 CAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPI 290 (772)
Q Consensus 212 ~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~ 290 (772)
+.|.-+|++++..+ ...+... .|...+ +.++++|..++..+..+.. +.....-.. |+ .....
T Consensus 161 ~~Vra~A~raLG~l----~~~~a~~--------~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~~l~~-~~--~~~g~ 223 (410)
T TIGR02270 161 ALVRAAALRALGEL----PRRLSES--------TLRLYLRDSDPEVRFAALEAGLLAGS--RLAWGVCRR-FQ--VLEGG 223 (410)
T ss_pred HHHHHHHHHHHHhh----ccccchH--------HHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHHHHHH-HH--hccCc
Confidence 99999999999863 3333332 234445 5789999999999977743 332221110 11 22234
Q ss_pred hHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHH
Q 004132 291 YVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAII 370 (772)
Q Consensus 291 ~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~ 370 (772)
+.+.+...++-...++ .++.-|.+.+++. ..++.++.++|.+... ..+..|++.+.. +++..-+-.
T Consensus 224 ~~~~~l~~~lal~~~~----~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p------~av~~L~~~l~d--~~~aR~A~e 289 (410)
T TIGR02270 224 PHRQRLLVLLAVAGGP----DAQAWLRELLQAA--ATRREALRAVGLVGDV------EAAPWCLEAMRE--PPWARLAGE 289 (410)
T ss_pred cHHHHHHHHHHhCCch----hHHHHHHHHhcCh--hhHHHHHHHHHHcCCc------chHHHHHHHhcC--cHHHHHHHH
Confidence 4544444444333333 5555555666653 3788888999977652 255555555543 234444444
Q ss_pred HHHHH
Q 004132 371 VIKDI 375 (772)
Q Consensus 371 ~l~~i 375 (772)
.+..|
T Consensus 290 A~~~I 294 (410)
T TIGR02270 290 AFSLI 294 (410)
T ss_pred HHHHh
Confidence 44444
No 58
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.69 E-value=0.0094 Score=70.79 Aligned_cols=368 Identities=18% Similarity=0.254 Sum_probs=203.5
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccC--CHH--HHHH
Q 004132 123 ESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAA--DAR--EAEN 198 (772)
Q Consensus 123 ~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~--~~~--e~~~ 198 (772)
..++.++...+ .++..|+.+|..+.++......-.....+..|++.|...++=..+..+.+|.++.-. +.. ....
T Consensus 253 kk~~~l~~kQe-qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g 331 (708)
T PF05804_consen 253 KKLQTLIRKQE-QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG 331 (708)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 34555565555 555577888888876532111112233455667777666777777777777766532 111 2345
Q ss_pred HHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH-HhcccchhhccCCchhHHHHHHHHHHHHHhhC--hhhh
Q 004132 199 IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLSAEPEIQYVALRNINLIVQRR--PTIL 275 (772)
Q Consensus 199 il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~-~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~--p~~~ 275 (772)
+++.+...+++.+.-++-.|+++++++.- +++....+. ..++|.|+.++. +++.+.+++..+..+.... ...|
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSf---d~~~R~~mV~~GlIPkLv~LL~-d~~~~~val~iLy~LS~dd~~r~~f 407 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLSF---DPELRSQMVSLGLIPKLVELLK-DPNFREVALKILYNLSMDDEARSMF 407 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhCc---CHHHHHHHHHCCCcHHHHHHhC-CCchHHHHHHHHHHhccCHhhHHHH
Confidence 78888899999998899999999998631 444433332 257788888886 4678888999998887642 2233
Q ss_pred hh--hcc-eeee-ccCCcHhHHHHHHHHHHHhc-ccccHHHHHH-----HHHHhhhhccHHHHHHHHHHHHHHHHhhhhh
Q 004132 276 AH--EIK-VFFC-KYNDPIYVKMEKLEIMIKLA-SDRNIDQVLL-----EFKEYATEVDVDFVRKAVRAIGRCAIKLERA 345 (772)
Q Consensus 276 ~~--~~~-if~~-~~~d~~~Ik~~kL~lL~~L~-n~~Nv~~Il~-----EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~ 345 (772)
.. .+. +..+ ..+....+....+-++..++ ++.|++.+++ .|.+.+...-+.+--++||.|+.---.....
T Consensus 408 ~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~ 487 (708)
T PF05804_consen 408 AYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKEL 487 (708)
T ss_pred hhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHH
Confidence 21 111 1111 22233446667777777775 5677776654 2333332222222223444443221111112
Q ss_pred HHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhCccc-HH------HHHHHHHHhccc-CChHHHHHHHHHHHhhhccc
Q 004132 346 AERCISVLLELIKIK-VNYVVQEAIIVIKDIFRRYPNT-YE------SIIATLCESLDT-LDEPEAKASMIWIIGEYAER 416 (772)
Q Consensus 346 ~~~~vd~Ll~ll~~~-~~~v~~e~i~~l~~i~~~~p~~-~~------~ii~~L~~~l~~-~~~p~a~~~~iwilGEy~~~ 416 (772)
...+|.-|+.++... .+...-|++-.+.++-. |+. .. ..++.+.+.|.. ..+++..-.++-++|--+..
T Consensus 488 f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~--~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d 565 (708)
T PF05804_consen 488 FVDFIGDLAKIVSSGDSEEFVVECLGILANLTI--PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD 565 (708)
T ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc--CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC
Confidence 223444455555543 23344455555555422 221 22 234555555532 23444544444556654432
Q ss_pred cCCH-----HHHHHHHhhhC--CCCCHHHHHHHHHHHHHHhhcCCCC----ChHHHHHHHHHhhhcCCCChHHHhhHHHH
Q 004132 417 IDNA-----DELLESFLESF--PEEPAQVQLQLLTATVKLFLKKPTE----GPQQMIQVVLNNATVETDNPDLRDRAYIY 485 (772)
Q Consensus 417 i~~~-----~~~L~~l~~~f--~~e~~~vq~~lLta~~Kl~~~~p~~----~~~~~v~~vl~~~~~~s~~~dvrdRA~~y 485 (772)
-.-+ ..+++.+++-+ ..|+.+.-+|++-++-++..+.+.- .-.+.+.+++.. . ++.|++||.-|-..
T Consensus 566 ~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL-~-~d~N~~ir~~~d~~ 643 (708)
T PF05804_consen 566 PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDL-M-HDKNAEIRKVCDNA 643 (708)
T ss_pred HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHH-h-cCCCHHHHHHHHHH
Confidence 1111 12334444333 3478899999999999998774420 012345677775 3 46899999988877
Q ss_pred HHHhc-CCHHHHHhh
Q 004132 486 WRLLS-TDPEAAKDV 499 (772)
Q Consensus 486 ~~Ll~-~~~~~~~~i 499 (772)
.-++. .+.+-+++|
T Consensus 644 Ldii~e~d~~w~~ri 658 (708)
T PF05804_consen 644 LDIIAEYDEEWAERI 658 (708)
T ss_pred HHHHHHhCHHHHHHh
Confidence 76653 344545443
No 59
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.14 Score=59.73 Aligned_cols=413 Identities=15% Similarity=0.198 Sum_probs=225.7
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhh
Q 004132 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRC 89 (772)
Q Consensus 10 lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~ 89 (772)
+|.--+.-|.|++-+.+-.+-=|.++..++.-|+++-.--...+++. |.-...|..+ +..++|.+.++
T Consensus 260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~---p~~~~fa~~a---------~~~v~P~Ll~~ 327 (859)
T KOG1241|consen 260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP---PSSKYFARQA---------LQDVVPVLLEL 327 (859)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---chhhHHHHHH---------HhHhhHHHHHH
Confidence 34444445555555555555555555555555554444444444433 1111111111 23455555555
Q ss_pred hC-------CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC-cccccHH
Q 004132 90 LK-------DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSH 161 (772)
Q Consensus 90 L~-------d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~-~~~l~~~ 161 (772)
|. |.++.+-|.|..|+.-+.+...+.+-. ...+-+++-+...|--=+-+|+.++..|....+.. +..+.++
T Consensus 328 L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~q 406 (859)
T KOG1241|consen 328 LTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQ 406 (859)
T ss_pred HHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhh
Confidence 53 356788899999887777666554432 36677787888888777888888888876543322 3345555
Q ss_pred HHHHHHHHhhc-------CChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhc----C
Q 004132 162 TLSKLLTALNE-------CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI----T 230 (772)
Q Consensus 162 ~~~~Ll~~L~~-------~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i----~ 230 (772)
.+..+++.+.| ..+|.--+|.+.+..-. .+......++..+..-| +..|-|.-.+..++..+.+.. .
T Consensus 407 alp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~-~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~~ 484 (859)
T KOG1241|consen 407 ALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAI-INQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEAAV 484 (859)
T ss_pred hhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhc-ccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhcc
Confidence 66666666554 46787778888776322 12222223333333334 334566666666666544211 0
Q ss_pred Ch---HHHHHHHHhcccchhhcc---C-CchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHh
Q 004132 231 ST---DVVRNLCKKMAPPLVTLL---S-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKL 303 (772)
Q Consensus 231 ~~---~~~~~l~~~~~~~L~~Ll---s-~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L 303 (772)
+. +.......-+++.|+.-. + ++.|.|-.+.++|..++...|+...+ .+....+-++.+|
T Consensus 485 s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~-------------~v~~~~l~il~kl 551 (859)
T KOG1241|consen 485 SNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP-------------MVQKLTLVILEKL 551 (859)
T ss_pred CCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH-------------HHHHHHHHHHHHH
Confidence 00 000112222333333322 2 57899999999999999877764332 1223333333333
Q ss_pred cccccHHHHHHHHHHhhhhcc-HHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHH
Q 004132 304 ASDRNIDQVLLEFKEYATEVD-VDFVRKAVRAIGRCAIKL----ERAAERCISVLLELIKIKVN-YVVQEAIIVIKDIFR 377 (772)
Q Consensus 304 ~n~~Nv~~Il~EL~~y~~~~d-~~~~~~~v~aIg~la~k~----~~~~~~~vd~Ll~ll~~~~~-~v~~e~i~~l~~i~~ 377 (772)
-+- ++ .+.+.|..... .++..-+...|+.+..|+ ++.++..+..+++++..+.+ .+.+|+.-.+.-+..
T Consensus 552 ~q~--i~---~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~ 626 (859)
T KOG1241|consen 552 DQT--IS---SQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAE 626 (859)
T ss_pred HHH--HH---HHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHH
Confidence 110 11 12222221111 123333344445444444 45556666666777777444 455565544433332
Q ss_pred hCccc----HHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccC-----CHHHHHHHHhhhCCCC--CHHHHHHHHHHH
Q 004132 378 RYPNT----YESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-----NADELLESFLESFPEE--PAQVQLQLLTAT 446 (772)
Q Consensus 378 ~~p~~----~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~-----~~~~~L~~l~~~f~~e--~~~vq~~lLta~ 446 (772)
.--.. -+...+.|..-|....+..+.++++-++|.-+.-.. -+.+++..+++.+..+ +-.||-++|.++
T Consensus 627 ~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~F 706 (859)
T KOG1241|consen 627 SLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVF 706 (859)
T ss_pred HHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHH
Confidence 21111 233455555566666777788888999998776543 2568888888877654 467899999999
Q ss_pred HHHhhcCCC
Q 004132 447 VKLFLKKPT 455 (772)
Q Consensus 447 ~Kl~~~~p~ 455 (772)
.-+++....
T Consensus 707 gDIAlaIg~ 715 (859)
T KOG1241|consen 707 GDIALAIGA 715 (859)
T ss_pred HHHHHHHHH
Confidence 999886544
No 60
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.61 E-value=0.0013 Score=65.35 Aligned_cols=93 Identities=23% Similarity=0.307 Sum_probs=77.3
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcC
Q 004132 94 DPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNEC 173 (772)
Q Consensus 94 ~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~ 173 (772)
+|-||..|+.+++-+...+|.+++. |.+.+..+|.|++|.|+.+|+..|..+...+. ...-...+.+++..+.|.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~--~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~---ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEP--YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM---IKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHh--HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc---eeehhhhhHHHHHHHcCC
Confidence 5889999999999999999999986 99999999999999999999999999876542 233333458888889999
Q ss_pred ChhHHHHHHHHHhccccC
Q 004132 174 TEWGQVFILDALSRYKAA 191 (772)
Q Consensus 174 ~ew~qv~iL~~L~~~~~~ 191 (772)
++..+-..-.++..+...
T Consensus 76 ~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKK 93 (178)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 998887777777766543
No 61
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.15 Score=58.45 Aligned_cols=286 Identities=16% Similarity=0.187 Sum_probs=175.3
Q ss_pred HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh---hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc-cccccc
Q 004132 44 AILAVNTFVKDSQDPNPLIRALAVRTMGCIRV---DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDR 119 (772)
Q Consensus 44 ~lL~iNtl~kDl~~~np~iralALrtl~~I~~---~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p-~~~~~~ 119 (772)
..-++-.+..-+.-+.+.+|-.-..++..+.. ..-.+++.+.+.+++...+--=|+.|+.++..+.+-+. +..++.
T Consensus 94 ~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~ 173 (569)
T KOG1242|consen 94 PISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEF 173 (569)
T ss_pred hhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhh
Confidence 33455566667777888888777766666542 23346667778899998888889999999999987655 345556
Q ss_pred chHHHHHHhhcCCChhHHH-HHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhH-------HHHHHHHHhccccC
Q 004132 120 GFLESLKDLISDNNPMVVA-NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWG-------QVFILDALSRYKAA 191 (772)
Q Consensus 120 ~~~~~L~~lL~D~d~~Vv~-~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~-------qv~iL~~L~~~~~~ 191 (772)
+|++.+.+.+.|++..-.. .+.-++.-.+.+-+...-.-..+.+..++....+..+-. -..+++++..|.-
T Consensus 174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV- 252 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV- 252 (569)
T ss_pred hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-
Confidence 7899999999998876554 233333222322222211223455666666665544332 2344555554442
Q ss_pred CHHHHHHHHHHHhHhh-c--CCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHH
Q 004132 192 DAREAENIVERVTPRL-Q--HANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLI 267 (772)
Q Consensus 192 ~~~e~~~il~~v~~~L-~--~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i 267 (772)
..++..++.-+ . -.......+.+.+...+ .+..+......++|.+...| .+.|++|-.+..+|..+
T Consensus 253 -----K~llpsll~~l~~~kWrtK~aslellg~m~~~-----ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 253 -----KLLLPSLLGSLLEAKWRTKMASLELLGAMADC-----APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred -----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh-----chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 12222222111 1 12334445555555443 35556666667888777766 58999999999999988
Q ss_pred Hhh--Chhhhhhhcc-eeeeccCCcHhHHHHHHHHHHHh-----cccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 004132 268 VQR--RPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKL-----ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCA 339 (772)
Q Consensus 268 ~~~--~p~~~~~~~~-if~~~~~d~~~Ik~~kL~lL~~L-----~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la 339 (772)
... +|+ +++++. .+.|..+...++ .+.++.|.+- +++.....|+.-|..=+.+.+.+.+|+++..++..+
T Consensus 323 ~svidN~d-I~~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 323 GSVIDNPD-IQKIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred HHhhccHH-HHHHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 754 455 445543 456654433233 2455555542 466666666666666667778888888888888877
Q ss_pred Hhh
Q 004132 340 IKL 342 (772)
Q Consensus 340 ~k~ 342 (772)
.-.
T Consensus 401 ~Lv 403 (569)
T KOG1242|consen 401 KLV 403 (569)
T ss_pred Hhh
Confidence 655
No 62
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.014 Score=69.12 Aligned_cols=137 Identities=17% Similarity=0.235 Sum_probs=93.0
Q ss_pred HHHHHHhhcCCCCHHHHhHH---HHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHH
Q 004132 47 AVNTFVKDSQDPNPLIRALA---VRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLE 123 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralA---Lrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~ 123 (772)
..+.+.|-..+.|..++-|- |.-.+.... +.+--.+..+++-+.|+||++|-.|+-.+.++- .+++++. +++
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~~--~~~ 130 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR--VKELLGN--IID 130 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHHH--HHH
Confidence 44566666666666554432 444445444 444455788999999999999999999988874 6777775 889
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHh-hcCChhHHHHHHHHHhccccC
Q 004132 124 SLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL-NECTEWGQVFILDALSRYKAA 191 (772)
Q Consensus 124 ~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L-~~~~ew~qv~iL~~L~~~~~~ 191 (772)
.+++++.|+++.|+.+|+.++..+-..++.-..+. + ...+++.| .+.+|-.....+..|....++
T Consensus 131 ~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~--g-~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 131 PIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL--G-LIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc--c-HHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 99999999999999999999999876553211111 0 22222222 366776666666666655443
No 63
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.55 E-value=0.13 Score=59.74 Aligned_cols=382 Identities=16% Similarity=0.203 Sum_probs=192.6
Q ss_pred CCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCC-Ch
Q 004132 56 QDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN-NP 134 (772)
Q Consensus 56 ~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~-d~ 134 (772)
-|++++.|+.-...++++....=...++..++.-+.+.++|||-+.+-+.+-+... +..+.+.+.|+.+-..+ +.
T Consensus 451 ided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasa----lgip~llpfLkavc~SkkSw 526 (1172)
T KOG0213|consen 451 IDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASA----LGIPALLPFLKAVCGSKKSW 526 (1172)
T ss_pred ecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHH----hCcHHHHHHHHHHhccccch
Confidence 46788888877555555443322333444466667789999999998887766532 22222455555554443 56
Q ss_pred hHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcC--ChhHHHHHHHHHh-----cc-ccCCHHHHHHHHHHHhHh
Q 004132 135 MVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNEC--TEWGQVFILDALS-----RY-KAADAREAENIVERVTPR 206 (772)
Q Consensus 135 ~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~--~ew~qv~iL~~L~-----~~-~~~~~~e~~~il~~v~~~ 206 (772)
.-.+.++....+|+.-.+-..+ +++..|++.+..+ ++--.+.++.+++ .. .|-..+....++..+-.-
T Consensus 527 qaRhTgIkivqqIail~Gcsvl----phl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 527 QARHTGIKIVQQIAILSGCSVL----PHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred hhhchhhHHHHHHHHHhcchhh----hhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 6677777777777765432222 2344444444322 2222233322222 11 122233444455544443
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhh-ccCCchhHHHHHHHHHHHHHhhC---hhhhhhhc-c-
Q 004132 207 LQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVT-LLSAEPEIQYVALRNINLIVQRR---PTILAHEI-K- 280 (772)
Q Consensus 207 L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~-Lls~~~~iryvaL~~l~~i~~~~---p~~~~~~~-~- 280 (772)
.+....-++-+-.+++.++.+.+ +++....+.+.+.-.+++ +-+.|.|.+-++|..+.+.+... |..+..++ .
T Consensus 603 ir~hrgk~laafLkAigyliplm-d~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ 681 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLM-DAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPE 681 (1172)
T ss_pred HHHccChHHHHHHHHHhhccccc-cHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHH
Confidence 33333334444455555544432 444433333222222233 33568899999999999998764 44333222 1
Q ss_pred eeeeccC------CcHh--HHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh------hhhH
Q 004132 281 VFFCKYN------DPIY--VKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL------ERAA 346 (772)
Q Consensus 281 if~~~~~------d~~~--Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~------~~~~ 346 (772)
+|++... ...| +--.+.++--+++...-+..++.+|+ +..+.|++-....+.++--+. +.--
T Consensus 682 ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lk----de~e~yrkm~~etv~ri~~~lg~~diderle 757 (1172)
T KOG0213|consen 682 FFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLK----DEPEQYRKMVAETVSRIVGRLGAADIDERLE 757 (1172)
T ss_pred HHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhc----cccHHHHHHHHHHHHHHHhccccccccHHHH
Confidence 2222211 1111 22244456666666666666666654 344555554444444433332 2334
Q ss_pred HHHHHHHHHHHhhccchhH--HHHHH-HHHHHHHhCcccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccCCH--H
Q 004132 347 ERCISVLLELIKIKVNYVV--QEAII-VIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA--D 421 (772)
Q Consensus 347 ~~~vd~Ll~ll~~~~~~v~--~e~i~-~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~~--~ 421 (772)
++++|-++--++....... -...- +...+..+....-..++......|.+ ..+.+++..+-++|.-+-.+... .
T Consensus 758 E~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnn-ksa~vRqqaadlis~la~Vlktc~ee 836 (1172)
T KOG0213|consen 758 ERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNN-KSAKVRQQAADLISSLAKVLKTCGEE 836 (1172)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHhccHH
Confidence 5677777766654332211 11111 22233332222223455555545544 45666655555555544333221 1
Q ss_pred HHHH----HHhhhCCCCCHHHHHHHHHHHHHHhh
Q 004132 422 ELLE----SFLESFPEEPAQVQLQLLTATVKLFL 451 (772)
Q Consensus 422 ~~L~----~l~~~f~~e~~~vq~~lLta~~Kl~~ 451 (772)
..+. .+.+.+..+.++|-..+|.|+.-+..
T Consensus 837 ~~m~~lGvvLyEylgeeypEvLgsILgAikaI~n 870 (1172)
T KOG0213|consen 837 KLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVN 870 (1172)
T ss_pred HHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence 2222 24566777889998888888776654
No 64
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.00045 Score=82.84 Aligned_cols=158 Identities=22% Similarity=0.276 Sum_probs=121.8
Q ss_pred cchhHHHHHhh----cCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhcCCC--hhhhHH
Q 004132 8 SSLFTDVVNCM----QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKITE 80 (772)
Q Consensus 8 s~lf~~vi~l~----~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~-~~np~iralALrtl~~I~--~~ei~~ 80 (772)
+.+-|-|++.+ -.+|.++..-+||++..+.--..+.+--.-..|-.-++ +++|.||+.+.-.+|.+. -|.+++
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie 997 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE 997 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccc
Confidence 34455566655 44678899999999988766555444333344555554 899999999999999975 578888
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccH
Q 004132 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITS 160 (772)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~ 160 (772)
.-.+.+-+-|.|.++-|||+|.+.+.++... +.++-.|.+..+..+|.|.++.+..-|=.-+.|++.++ ..++.+.+
T Consensus 998 ~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLP 1074 (1251)
T KOG0414|consen 998 PWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLP 1074 (1251)
T ss_pred hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhch
Confidence 8888899999999999999999999999854 56666688999999999999999888888899998765 45566665
Q ss_pred HHHHHHHH
Q 004132 161 HTLSKLLT 168 (772)
Q Consensus 161 ~~~~~Ll~ 168 (772)
..+.+|-+
T Consensus 1075 dil~~Ls~ 1082 (1251)
T KOG0414|consen 1075 DILSRLSN 1082 (1251)
T ss_pred HHHHhhcc
Confidence 55555433
No 65
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.11 Score=58.54 Aligned_cols=401 Identities=16% Similarity=0.190 Sum_probs=226.9
Q ss_pred cHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHH-hhccc---ccc
Q 004132 42 DLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLY-DINAE---LVE 117 (772)
Q Consensus 42 dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~-~~~p~---~~~ 117 (772)
..+.+-+-.+.||+...|.+-+- +++++.+ ..+...+.+..-||-+.++++-+. -..++ ..+
T Consensus 18 KaaalelEk~Vk~l~~~~~~~~i-----------~k~I~~L---~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 18 KAAALELEKLVKDLVNNNDYDQI-----------RKVISEL---AGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred HHHHHHHHHHHHHHHccCcHHHH-----------HHHHHHH---HHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 35566667777788776655431 2333333 344555667777888877776652 12222 233
Q ss_pred ccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChh--HHHHHHHHHhc-cccCCH-
Q 004132 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEW--GQVFILDALSR-YKAADA- 193 (772)
Q Consensus 118 ~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew--~qv~iL~~L~~-~~~~~~- 193 (772)
+.++.+..+++|.|..|+.-|+-+++.|++--.+..+......+.-|++...+.+.- +-..+|+-|.+ ...++.
T Consensus 84 --~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 84 --KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS 161 (675)
T ss_pred --HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence 467888889999999999999999999987654555555555566666655444332 22233333322 211111
Q ss_pred -HHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHH---
Q 004132 194 -REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIV--- 268 (772)
Q Consensus 194 -~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~--- 268 (772)
=....++..+..++...|+....--+..+..+ +.+++-+.++- ...+.+-|..+|+ +.++||-+.=..+..+.
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~L-ds~P~~~m~~y-l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI 239 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVL-DSVPDLEMISY-LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI 239 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hcCCcHHHHhc-chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 12345677777777788888877777766543 23334444332 1234444566665 57788866555444443
Q ss_pred hhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh----h
Q 004132 269 QRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE----R 344 (772)
Q Consensus 269 ~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~----~ 344 (772)
+..|..+ +..++++-|...+.+.+++++.+++.-|.....-++ .
T Consensus 240 ~s~P~s~--------------------------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~ 287 (675)
T KOG0212|consen 240 RSSPSSM--------------------------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL 287 (675)
T ss_pred hcCcccc--------------------------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh
Confidence 2334332 222233333344445555555555444433332222 1
Q ss_pred hHHHHHHHHHHHHhhccchhHHHHHH----HHHHHHHhCcc----cHHHHHHHHHHhcccCChHHHH-HHHHHHHhhhcc
Q 004132 345 AAERCISVLLELIKIKVNYVVQEAII----VIKDIFRRYPN----TYESIIATLCESLDTLDEPEAK-ASMIWIIGEYAE 415 (772)
Q Consensus 345 ~~~~~vd~Ll~ll~~~~~~v~~e~i~----~l~~i~~~~p~----~~~~ii~~L~~~l~~~~~p~a~-~~~iwilGEy~~ 415 (772)
....|+..++.++....+.-..++.. .+..++...-. -+..+++.+.+.+.+ +.-++| ++.=|++-=|..
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhh
Confidence 23345555555555544421112211 12222222111 144677777777754 233444 666799876643
Q ss_pred ----ccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhc-
Q 004132 416 ----RIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS- 490 (772)
Q Consensus 416 ----~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~- 490 (772)
.+.....++..+++...+.+.+|-+..|.-++-++....+-...+.+..+|++..+ +..-++.||.+..|=+.
T Consensus 367 ~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e--~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 367 APGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKE--DTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred CcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhh--hhHHHHhhhhHHHHHHHH
Confidence 22335688888999999999999998888888887643321356677788887543 45667889888776553
Q ss_pred -CCHHH
Q 004132 491 -TDPEA 495 (772)
Q Consensus 491 -~~~~~ 495 (772)
.++|.
T Consensus 445 lL~aE~ 450 (675)
T KOG0212|consen 445 LLNAER 450 (675)
T ss_pred HhCHHH
Confidence 24543
No 66
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.47 E-value=0.00028 Score=64.21 Aligned_cols=106 Identities=24% Similarity=0.229 Sum_probs=75.3
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc---ccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCccc-
Q 004132 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE- 157 (772)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~---~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~- 157 (772)
+++.+.+.+.+.++++|+.|+.|+..+...+|+... ..+.++.+.++|+|+|+.|+.+|+.+|..++...+.....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 667788899999999999999999999876554322 2478899999999999999999999999998754321111
Q ss_pred ccHHHHHHHHHHhhcCChhHHHHHHHHHhc
Q 004132 158 ITSHTLSKLLTALNECTEWGQVFILDALSR 187 (772)
Q Consensus 158 l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~ 187 (772)
...+.+..|++.+.+.+...+...+.+|..
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 111235555555555555555555555543
No 67
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.47 E-value=0.00059 Score=58.95 Aligned_cols=84 Identities=29% Similarity=0.387 Sum_probs=61.5
Q ss_pred HHHHhhh-CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHH
Q 004132 84 DPLQRCL-KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (772)
Q Consensus 84 ~~v~~~L-~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~ 162 (772)
+.+.+.| +|++++||..|+.+++++. ++ ..++.|..+++|+|+.|...|+.+|..+... ..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~----------~~ 63 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--DP------EAIPALIELLKDEDPMVRRAAARALGRIGDP----------EA 63 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--HH------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHHH----------HT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--CH------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH----------HH
Confidence 4566767 8999999999999999553 22 3678999999999999999999999988642 23
Q ss_pred HHHHHHHhhcCChhH-HHHHHHHH
Q 004132 163 LSKLLTALNECTEWG-QVFILDAL 185 (772)
Q Consensus 163 ~~~Ll~~L~~~~ew~-qv~iL~~L 185 (772)
+..|.+.+.+.+.|. +...+..|
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhc
Confidence 556666665554443 55555444
No 68
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.014 Score=68.06 Aligned_cols=170 Identities=17% Similarity=0.202 Sum_probs=116.6
Q ss_pred HHHhhcCCCCHHHHhHHH-HHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHh
Q 004132 50 TFVKDSQDPNPLIRALAV-RTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL 128 (772)
Q Consensus 50 tl~kDl~~~np~iralAL-rtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~l 128 (772)
.+++.+.+.-+.-|..|+ ++++.+..-.=.-.+++++.++..-.+--.+|-..+-+..-....|+.... .+..+.+=
T Consensus 17 elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~--avnt~~kD 94 (734)
T KOG1061|consen 17 ELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAIL--AVNTFLKD 94 (734)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHh--hhhhhhcc
Confidence 445566554445555554 567777655556778999999999999666666666666555667776442 33443333
Q ss_pred hcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHH--HHHHHHHHHhHh
Q 004132 129 ISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAR--EAENIVERVTPR 206 (772)
Q Consensus 129 L~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~--e~~~il~~v~~~ 206 (772)
-.|.||++++-|+..+..+.-. .+.......|.+.+++-++..+...--.++++...+.+ +...+++.+...
T Consensus 95 ~~d~np~iR~lAlrtm~~l~v~------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~l 168 (734)
T KOG1061|consen 95 CEDPNPLIRALALRTMGCLRVD------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDL 168 (734)
T ss_pred CCCCCHHHHHHHhhceeeEeeh------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHH
Confidence 4689999999998877665321 23344566777888888999988887777776544432 334577888888
Q ss_pred hcCCCHHHHHHHHHHHHHhhh
Q 004132 207 LQHANCAVVLSAVKMILQQME 227 (772)
Q Consensus 207 L~~~n~aVv~eaik~i~~~~~ 227 (772)
+.+.|+.||-.|+.++..+.+
T Consensus 169 l~D~~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 169 LSDSNPMVVANALAALSEIHE 189 (734)
T ss_pred hcCCCchHHHHHHHHHHHHHH
Confidence 889999999999998876543
No 69
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.41 E-value=0.05 Score=61.20 Aligned_cols=373 Identities=14% Similarity=0.179 Sum_probs=207.9
Q ss_pred hhcCCCCHHHHhHHHHHhcCCChhhh-----------------------HHHHHHHHHhhhCC-------CChHHHHHHH
Q 004132 53 KDSQDPNPLIRALAVRTMGCIRVDKI-----------------------TEYLCDPLQRCLKD-------DDPYVRKTAA 102 (772)
Q Consensus 53 kDl~~~np~iralALrtl~~I~~~ei-----------------------~~~l~~~v~~~L~d-------~~pyVRK~Aa 102 (772)
+-+.++|..|...|+..-++|..+|+ +..+.|.+.++|.. .++.+-+.|.
T Consensus 270 ~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~ 349 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAAS 349 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHH
Confidence 45678999999999998888876554 33467777777743 4556888888
Q ss_pred HHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC-cccccHHHHHHHHHHhhcCCh------
Q 004132 103 ICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTE------ 175 (772)
Q Consensus 103 ~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~-~~~l~~~~~~~Ll~~L~~~~e------ 175 (772)
-|+--+.+...+.+-++ ...-+.+-+...|..=+-+|+.|+..+....+.. +-.+.++.+.-+++..+|..=
T Consensus 350 sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~tt 428 (858)
T COG5215 350 SCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTT 428 (858)
T ss_pred HHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHH
Confidence 77765556555554332 4455566677777777778888898887544332 234556667777777766544
Q ss_pred -hHHHHHHHHHhccc-cCCHHHHHHHHHHHhHhhc--CCCHHHHHHHHHHHHHhhhhcCC-----hHHHHHHHHhcccch
Q 004132 176 -WGQVFILDALSRYK-AADAREAENIVERVTPRLQ--HANCAVVLSAVKMILQQMELITS-----TDVVRNLCKKMAPPL 246 (772)
Q Consensus 176 -w~qv~iL~~L~~~~-~~~~~e~~~il~~v~~~L~--~~n~aVv~eaik~i~~~~~~i~~-----~~~~~~l~~~~~~~L 246 (772)
|.--.|-+.+.... |.. ++...+...+. .-++-+...|...+.++.+.+.. ++.+..+..-+++.|
T Consensus 429 Awc~g~iad~va~~i~p~~-----Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L 503 (858)
T COG5215 429 AWCFGAIADHVAMIISPCG-----HLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL 503 (858)
T ss_pred HHHHHHHHHHHHHhcCccc-----cccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence 44333333332211 110 00011111111 12455666666666655443321 112222222333334
Q ss_pred hh---ccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHh-------cccccHHHHHHHH
Q 004132 247 VT---LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKL-------ASDRNIDQVLLEF 316 (772)
Q Consensus 247 ~~---Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L-------~n~~Nv~~Il~EL 316 (772)
+. +.-++.|.|-.+..++..++...|+.+.+-+.-|+ .+-..||+--..+ -+..| ++||
T Consensus 504 v~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~-------~~~~~kl~~~isv~~q~l~~eD~~~----~~el 572 (858)
T COG5215 504 VKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFY-------DYTSKKLDECISVLGQILATEDQLL----VEEL 572 (858)
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHH-------HHHHHHHHHHHHHhhhhhhhHHHHH----HHHH
Confidence 32 22468899999999999988888876655332221 1223444332221 11112 2232
Q ss_pred HHhhhhccHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHH----hCcccHHHHH
Q 004132 317 KEYATEVDVDFVRKAVRAIGRCAIKL----ERAAERCISVLLELIKIK-VNYVVQEAIIVIKDIFR----RYPNTYESII 387 (772)
Q Consensus 317 ~~y~~~~d~~~~~~~v~aIg~la~k~----~~~~~~~vd~Ll~ll~~~-~~~v~~e~i~~l~~i~~----~~p~~~~~ii 387 (772)
. ...+.-|..+..++ ++..+..++.++++++.. ...+-.++...|..+.. ++....+..+
T Consensus 573 q-----------SN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fi 641 (858)
T COG5215 573 Q-----------SNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFI 641 (858)
T ss_pred H-----------HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2 22222233333333 445566777888888877 44555666666655544 2222234556
Q ss_pred HHHHHhcccCChHHHHHHHHHHHhhhccccCC-----HHHHHHHHhhhCCCC--CHHHHHHHHHHHHHHhhcCC
Q 004132 388 ATLCESLDTLDEPEAKASMIWIIGEYAERIDN-----ADELLESFLESFPEE--PAQVQLQLLTATVKLFLKKP 454 (772)
Q Consensus 388 ~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~-----~~~~L~~l~~~f~~e--~~~vq~~lLta~~Kl~~~~p 454 (772)
+.|.+.+. +.+..+..+++-++|..++.... +..+...+++.+..+ .-++|-++|+.+.-+++...
T Consensus 642 Pyl~~aln-~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaig 714 (858)
T COG5215 642 PYLTRALN-CTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIG 714 (858)
T ss_pred HHHHHHhc-chhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHh
Confidence 66666663 34555667788888887765432 455666666655543 45678889988888877543
No 70
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.40 E-value=0.00035 Score=63.62 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=81.7
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChh--h----hHH-HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---c
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVD--K----ITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---V 116 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrtl~~I~~~--e----i~~-~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~---~ 116 (772)
+++.+.+-+.++|+.+|..|+.+++++... + +.+ .+++.+.+++.|+++.||+.|+.++..+....++. +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 456667777788899999999999988742 2 333 56778899999999999999999999998765432 2
Q ss_pred cccchHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004132 117 EDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (772)
Q Consensus 117 ~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~ 148 (772)
...++++.+..+|.+.+..+...|+.+|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33578899999999999999999999888765
No 71
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.04 Score=62.94 Aligned_cols=261 Identities=16% Similarity=0.181 Sum_probs=159.5
Q ss_pred ccchhHHHH-HhhcCCCcchHH----HHHHHHHHhccC--CCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC---Chh
Q 004132 7 VSSLFTDVV-NCMQTENLELKK----LVYLYLINYAKS--QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI---RVD 76 (772)
Q Consensus 7 vs~lf~~vi-~l~~s~~~~lKr----l~YL~l~~~~~~--~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I---~~~ 76 (772)
.-+.|++.+ +.+..++....| +++.+.+..+.. .|.+. =..+++..-..|..+.+|-.|..+.-.| -.+
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv-~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV-PILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH-hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 334555554 456665555544 344433333332 24433 3445556666778888887765544333 234
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC
Q 004132 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (772)
Q Consensus 77 ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~ 154 (772)
.-+..+.+.+...+.+..+.-+..|+..++-+....|..+.. +++++.+.+-|.|++|.|.-++..++..++..-..+
T Consensus 250 ~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~ 329 (569)
T KOG1242|consen 250 YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP 329 (569)
T ss_pred chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH
Confidence 444555555555555556776777777777777777765542 457788899999999999999999998887543211
Q ss_pred cccccHHHHHHHHHHhhcCChhHHHHHHHHHhc-ccc-CCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCCh
Q 004132 155 IFEITSHTLSKLLTALNECTEWGQVFILDALSR-YKA-ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITST 232 (772)
Q Consensus 155 ~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~-~~~-~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~ 232 (772)
-+.+.+..|+.++.+++....-.+-.+.+. |.. -++.....+++.+..-+..++....-.++..+-++...++++
T Consensus 330 ---dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp 406 (569)
T KOG1242|consen 330 ---DIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP 406 (569)
T ss_pred ---HHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH
Confidence 134467778888877764443333222221 111 122333445555656677777777788888887766556677
Q ss_pred HHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhC
Q 004132 233 DVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR 271 (772)
Q Consensus 233 ~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~ 271 (772)
.-+..+...+.|.|-.-+- ..||+|+++.+.+..+..+.
T Consensus 407 ~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 407 KDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred HHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 6555555555555554443 47999999999998887664
No 72
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.23 E-value=0.004 Score=64.23 Aligned_cols=184 Identities=20% Similarity=0.198 Sum_probs=113.2
Q ss_pred hhhCCCChHHHHHHHHHHHHHHhhc--cccccccchHH-------HHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccc
Q 004132 88 RCLKDDDPYVRKTAAICVAKLYDIN--AELVEDRGFLE-------SLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (772)
Q Consensus 88 ~~L~d~~pyVRK~Aa~~l~kl~~~~--p~~~~~~~~~~-------~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l 158 (772)
+.-.+.++-.|..|+..+-++...+ .+..+ .+.+ .+...+.|.+..|+..|+..+.++...-+...-..
T Consensus 14 ~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~ 91 (228)
T PF12348_consen 14 KKESESDWEERVEALQKLRSLIKGNAPEDFPP--DFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY 91 (228)
T ss_dssp HHHT-SSHHHHHHHHHHHHHHHHH-B-----H--HHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred ccCCccCHHHHHHHHHHHHHHHHcCCccccHH--HHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 3347899999999999999998877 22222 2444 44466788889999999999999887654432223
Q ss_pred cHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHH-HHHHhHhhcCCCHHHHHHHHHHHHHhhhhcC-ChHHH-
Q 004132 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI-VERVTPRLQHANCAVVLSAVKMILQQMELIT-STDVV- 235 (772)
Q Consensus 159 ~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~i-l~~v~~~L~~~n~aVv~eaik~i~~~~~~i~-~~~~~- 235 (772)
....+..|++.+.+...+.+....++|..+...-. -...+ ...+....+|.|+.|..++++.+..++...+ +...+
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 44566778888888888877766666655443222 11233 6677778899999999999999988765544 11111
Q ss_pred -HHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhh
Q 004132 236 -RNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI 274 (772)
Q Consensus 236 -~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~ 274 (772)
......+.+.+..+++ .++++|..|-+.+..+.+..|+-
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 1123456666777775 69999999999999998877753
No 73
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.12 Score=64.32 Aligned_cols=437 Identities=14% Similarity=0.151 Sum_probs=228.5
Q ss_pred HHHHHhhcCCCcchHHHHHH---HHHHhccCCCcHHHHHH---HHHHhhcCCCCHHHHhHHHH-----------------
Q 004132 12 TDVVNCMQTENLELKKLVYL---YLINYAKSQPDLAILAV---NTFVKDSQDPNPLIRALAVR----------------- 68 (772)
Q Consensus 12 ~~vi~l~~s~~~~lKrl~YL---~l~~~~~~~~dl~lL~i---Ntl~kDl~~~np~iralALr----------------- 68 (772)
-.....+.+++...|+.+.+ .+..|...+|+..++.- ..|..-|.|.|++++-.|-|
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~L 900 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSL 900 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHH
Confidence 33445778899999988755 45566666666432211 34555667777777665533
Q ss_pred ------Hh----------------------c------CCC-hhhhH--------HHHHHHHHhhhCC-CChHHHHHHHHH
Q 004132 69 ------TM----------------------G------CIR-VDKIT--------EYLCDPLQRCLKD-DDPYVRKTAAIC 104 (772)
Q Consensus 69 ------tl----------------------~------~I~-~~ei~--------~~l~~~v~~~L~d-~~pyVRK~Aa~~ 104 (772)
++ | +|. -.|++ ++++--..++.+| ..+.=||-||.+
T Consensus 901 V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfG 980 (1702)
T KOG0915|consen 901 VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFG 980 (1702)
T ss_pred HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhc
Confidence 22 1 111 01111 2333334566666 566779999999
Q ss_pred HHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhh---cCChhH--
Q 004132 105 VAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN---ECTEWG-- 177 (772)
Q Consensus 105 l~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~---~~~ew~-- 177 (772)
+..+....-+.++. ..++++|.+-=.|.|+.|..+-......+... ++ ......+..++..|- .+.+|-
T Consensus 981 f~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D-~k---~~vd~y~neIl~eLL~~lt~kewRVR 1056 (1702)
T KOG0915|consen 981 FGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITD-SK---KVVDEYLNEILDELLVNLTSKEWRVR 1056 (1702)
T ss_pred hHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccC-hH---HHHHHHHHHHHHHHHHhccchhHHHH
Confidence 99999877665543 23455666655799999887655444443322 22 122223344444332 467884
Q ss_pred ---HHHHHHHHhccccCCHHHHHHHHHHHhH---hhcCCCHHHHHHHH---HHHHH----hhhhcCChHHHHHHHHhccc
Q 004132 178 ---QVFILDALSRYKAADAREAENIVERVTP---RLQHANCAVVLSAV---KMILQ----QMELITSTDVVRNLCKKMAP 244 (772)
Q Consensus 178 ---qv~iL~~L~~~~~~~~~e~~~il~~v~~---~L~~~n~aVv~eai---k~i~~----~~~~i~~~~~~~~l~~~~~~ 244 (772)
...+.++|+. +..++..+.+.+.-.. ...+.-.+|+-.|- +++.+ +.+ ..+...-++....+.|
T Consensus 1057 easclAL~dLl~g--~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d-~~~~~~~~~~l~~iLP 1133 (1702)
T KOG0915|consen 1057 EASCLALADLLQG--RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD-VTNGAKGKEALDIILP 1133 (1702)
T ss_pred HHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCCcccHHHHHHHHHH
Confidence 3355666654 2223333333222222 22222234433332 22222 111 1122222334445555
Q ss_pred chhh--ccCCchhHHHHHHHHHHHHHhhChhhhhhhcc-eeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhh
Q 004132 245 PLVT--LLSAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYAT 321 (772)
Q Consensus 245 ~L~~--Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~-if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~ 321 (772)
.|.. .+|+-+++|-+++.++..|+...+..+.+|.. .+.|+ .... ..+=.+++ .|+.
T Consensus 1134 fLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~l---------------l~~~-s~lE~~vL----nYls 1193 (1702)
T KOG0915|consen 1134 FLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLL---------------LNAY-SELEPQVL----NYLS 1193 (1702)
T ss_pred HHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHH---------------HHHc-cccchHHH----HHHH
Confidence 5442 45677899999999999999999988887753 12221 1111 11111222 3332
Q ss_pred hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHH
Q 004132 322 EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPE 401 (772)
Q Consensus 322 ~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~ 401 (772)
-.-.....+++.....=+.|-.+ -.+++-.++..-+..|-.|.+-++.+++|..-+.-. -..
T Consensus 1194 ~r~~~~e~ealDt~R~s~akssp----mmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~T--------------kvg 1255 (1702)
T KOG0915|consen 1194 LRLINIETEALDTLRASAAKSSP----MMETINKCINYIDISVLEELIPRLTELVRGSVGLGT--------------KVG 1255 (1702)
T ss_pred HhhhhhHHHHHHHHHHhhhcCCc----HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCc--------------chh
Confidence 11122333444333222222222 234555555555555666666666666665322110 001
Q ss_pred HHHHHHHHHhhhcccc-CCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHh
Q 004132 402 AKASMIWIIGEYAERI-DNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 480 (772)
Q Consensus 402 a~~~~iwilGEy~~~i-~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrd 480 (772)
+-..++-+.-.|+..+ +-...+++.++-.+.+-++.+|.+.-.|..+++.-..+++++.+++.++.....+.+++- .-
T Consensus 1256 ~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~-si 1334 (1702)
T KOG0915|consen 1256 CASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK-SI 1334 (1702)
T ss_pred HHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc-ch
Confidence 1122223333455333 346789999999999999999999999999997654333488888888877554322222 33
Q ss_pred hHHHHHHHhcCCHH
Q 004132 481 RAYIYWRLLSTDPE 494 (772)
Q Consensus 481 RA~~y~~Ll~~~~~ 494 (772)
++.-...+.++..+
T Consensus 1335 scatis~Ian~s~e 1348 (1702)
T KOG0915|consen 1335 SCATISNIANYSQE 1348 (1702)
T ss_pred hHHHHHHHHHhhHH
Confidence 33333335554443
No 74
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.21 E-value=0.44 Score=54.35 Aligned_cols=438 Identities=14% Similarity=0.139 Sum_probs=223.1
Q ss_pred CCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHH-----HHHH----HhhcCCCCH--HHHhHHHHHhcC
Q 004132 4 GKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILA-----VNTF----VKDSQDPNP--LIRALAVRTMGC 72 (772)
Q Consensus 4 G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~-----iNtl----~kDl~~~np--~iralALrtl~~ 72 (772)
|+|.....--+...+.|+|-+.||..-+....+.+-..+-.--. .--| ++-....-+ -..-++--+++.
T Consensus 436 ~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk 515 (975)
T COG5181 436 CHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAK 515 (975)
T ss_pred hhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHH
Confidence 33433333334468999999999999999999987654422100 0001 110111000 011122223333
Q ss_pred C-ChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh--------cCC--ChhHHHHHH
Q 004132 73 I-RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI--------SDN--NPMVVANAV 141 (772)
Q Consensus 73 I-~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL--------~D~--d~~Vv~~av 141 (772)
. +. +++..-|..-++|+..--||-+|.++.|++..-+-+ +|-+.+...| .+. ..+++.-+.
T Consensus 516 ~~g~----~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~----~~dErleerl~d~il~Afqeq~~t~~~il~~f 587 (975)
T COG5181 516 MGGD----PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRL----GFDERLEERLYDSILNAFQEQDTTVGLILPCF 587 (975)
T ss_pred HcCC----hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccc----cccHHHHHHHHHHHHHHHHhccccccEEEecc
Confidence 2 23 344444667778866666999999999999765543 2333333333 222 222222221
Q ss_pred HHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhcccc-----CCHHHHHHHHHHHhHhhcCCCHHHH-
Q 004132 142 AALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKA-----ADAREAENIVERVTPRLQHANCAVV- 215 (772)
Q Consensus 142 ~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~-----~~~~e~~~il~~v~~~L~~~n~aVv- 215 (772)
.+..--..-.++ ......+..+|+.|+...|-.+...+++...+.+ ...++...+=+.+-..|....+-|+
T Consensus 588 ~tv~vsl~~r~k---p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLg 664 (975)
T COG5181 588 STVLVSLEFRGK---PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLG 664 (975)
T ss_pred cceeeehhhccC---cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHH
Confidence 111100001111 2234556777777777777776665555544322 1222333332333444544455444
Q ss_pred --HHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhH
Q 004132 216 --LSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYV 292 (772)
Q Consensus 216 --~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~I 292 (772)
+.|+.+|...... . ..+--+..+.|.|.-+| +++.-++--.+..+..|+...|+. |
T Consensus 665 sil~Ai~~I~sv~~~-~---~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey-----------------i 723 (975)
T COG5181 665 SILKAICSIYSVHRF-R---SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY-----------------I 723 (975)
T ss_pred HHHHHHHHHhhhhcc-c---ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc-----------------C
Confidence 4455555432111 0 00000112444444444 344445555555556666555542 1
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHH
Q 004132 293 KMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVI 372 (772)
Q Consensus 293 k~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l 372 (772)
...-+-.|.=||.+-+..-+.++||.+....|-++.-+.+ ...+++|++=|+...-+.+- +-.+-
T Consensus 724 ------------~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP--qdvL~~LlnnLkvqeRq~Rv-ctsva 788 (975)
T COG5181 724 ------------GVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP--QDVLDILLNNLKVQERQQRV-CTSVA 788 (975)
T ss_pred ------------CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH--HHHHHHHHhcchHHHHHhhh-hhhhh
Confidence 1223556666777778888999999999999999887643 45778887766543322110 11122
Q ss_pred HHHHHhCcccHHHHHHHHHHhcccC---ChHHHHHHHHHHHhhhccccCC-HHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 004132 373 KDIFRRYPNTYESIIATLCESLDTL---DEPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQVQLQLLTATVK 448 (772)
Q Consensus 373 ~~i~~~~p~~~~~ii~~L~~~l~~~---~~p~a~~~~iwilGEy~~~i~~-~~~~L~~l~~~f~~e~~~vq~~lLta~~K 448 (772)
..|+.++-..+ .+++.|..-.+.- -+..+..+|+++.---|+...+ .--+.-.+-+.+.++++.-|....+-+--
T Consensus 789 I~iVae~cgpf-sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~H 867 (975)
T COG5181 789 ISIVAEYCGPF-SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRH 867 (975)
T ss_pred hhhhHhhcCch-hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHH
Confidence 23344433222 3445554333221 0122345666654222221111 11222233355778888888888888888
Q ss_pred HhhcCCCCChHHHHHHHHHhhhc--CCCChHHHhhHHHHHHHh
Q 004132 449 LFLKKPTEGPQQMIQVVLNNATV--ETDNPDLRDRAYIYWRLL 489 (772)
Q Consensus 449 l~~~~p~~~~~~~v~~vl~~~~~--~s~~~dvrdRA~~y~~Ll 489 (772)
+.+.+|.-+-.+...++++..-- -...|-++++-.|-..-+
T Consensus 868 l~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~ 910 (975)
T COG5181 868 LVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESF 910 (975)
T ss_pred HhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHH
Confidence 98888875456666667665321 135688888877665444
No 75
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.18 E-value=0.013 Score=62.03 Aligned_cols=227 Identities=20% Similarity=0.220 Sum_probs=157.4
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCC-hhhhHH-HH-----HHHHHhhhCCCCh--HHHHHHHHHHHHHHh-hcccc-
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITE-YL-----CDPLQRCLKDDDP--YVRKTAAICVAKLYD-INAEL- 115 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrtl~~I~-~~ei~~-~l-----~~~v~~~L~d~~p--yVRK~Aa~~l~kl~~-~~p~~- 115 (772)
+|.-|..-|.+++..||-.|+-+||+|. ..+.++ ++ .+++..++.++.+ -.-+.|-..+..+.+ ++|.-
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~ 237 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD 237 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc
Confidence 3456788889999999999999999996 334443 33 4677778877666 445788888888887 45531
Q ss_pred -ccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCc-ccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCH
Q 004132 116 -VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI-FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA 193 (772)
Q Consensus 116 -~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~-~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~ 193 (772)
-....-++.|.+|+...|+.|+.-|+=|+..+........ .-+....-.+|+..|...+--.|.-+||.+......++
T Consensus 238 w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D 317 (526)
T COG5064 238 WSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD 317 (526)
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCc
Confidence 1112356889999999999999999999988864321111 11233345567777766666678889999988765444
Q ss_pred HHHHH-----HHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHH-HHhcccchhhccC-CchhHHHHHHHHHHH
Q 004132 194 REAEN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNL-CKKMAPPLVTLLS-AEPEIQYVALRNINL 266 (772)
Q Consensus 194 ~e~~~-----il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l-~~~~~~~L~~Lls-~~~~iryvaL~~l~~ 266 (772)
....- .+..+.++|+|.-..+.-||.-+|.++.. .+.+-++.+ -.+++|||+.+|+ .+--+|--|..+|..
T Consensus 318 ~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--Gnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 318 DQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred cceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33322 34556677888878999999988876531 244444443 3378999999996 578888888888877
Q ss_pred HHhh---Chhhh
Q 004132 267 IVQR---RPTIL 275 (772)
Q Consensus 267 i~~~---~p~~~ 275 (772)
.... +|+++
T Consensus 396 atsgg~~~PD~i 407 (526)
T COG5064 396 ATSGGLNRPDII 407 (526)
T ss_pred hhccccCCchHH
Confidence 6543 46554
No 76
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.15 E-value=0.41 Score=53.86 Aligned_cols=337 Identities=15% Similarity=0.139 Sum_probs=174.3
Q ss_pred HHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHH
Q 004132 60 PLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVAN 139 (772)
Q Consensus 60 p~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~ 139 (772)
+...-+=+..++.+..+++++|+..-+-.++.+....++-- ......+|+. +.+.+. +|...|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f-----~~~~~~~~~~-----~~~fl~-lL~~~d~~i~~~ 120 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLF-----HDDALLKKKT-----WEPFFN-LLNRQDQFIVHM 120 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHH-----HHHhhccccc-----hHHHHH-HHcCCchhHHHH
Confidence 56666667788888888888888888888887743322211 1111112333 223333 555566666666
Q ss_pred HHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCC-CHHHHHHH
Q 004132 140 AVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHA-NCAVVLSA 218 (772)
Q Consensus 140 av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~-n~aVv~ea 218 (772)
|...+..+...++.... ..+...+.+.+...+++. +...+.-|
T Consensus 121 a~~iLt~l~~~~~~~~~------------------------------------~~~l~~~~~~l~~~l~~~~~~~~~~~~ 164 (429)
T cd00256 121 SFSILAKLACFGLAKME------------------------------------GSDLDYYFNWLKEQLNNITNNDYVQTA 164 (429)
T ss_pred HHHHHHHHHhcCccccc------------------------------------hhHHHHHHHHHHHHhhccCCcchHHHH
Confidence 66666555433221100 001111222233333321 23333444
Q ss_pred HHHHHHhhhhcCChHHHHHH-HHhcccchhhccCC---chhHHHHHHHHHHHHHhhCh--------hhhhhhcceeeecc
Q 004132 219 VKMILQQMELITSTDVVRNL-CKKMAPPLVTLLSA---EPEIQYVALRNINLIVQRRP--------TILAHEIKVFFCKY 286 (772)
Q Consensus 219 ik~i~~~~~~i~~~~~~~~l-~~~~~~~L~~Lls~---~~~iryvaL~~l~~i~~~~p--------~~~~~~~~if~~~~ 286 (772)
++++..++ ..+.....+ -.+.+++|..++++ ...++|-++=++-.+.-..+ +++.....++. .
T Consensus 165 v~~L~~LL---~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k--~ 239 (429)
T cd00256 165 ARCLQMLL---RVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILK--E 239 (429)
T ss_pred HHHHHHHh---CCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHH--h
Confidence 44443332 122221111 12344556666643 45788888888877753322 11111111111 1
Q ss_pred CCcHhHHHHHHHHHHHhcccc--------cHHHHHH-HHHHhh------hhccHHHHHHHHHHHHHHHHhhh--hhHHHH
Q 004132 287 NDPIYVKMEKLEIMIKLASDR--------NIDQVLL-EFKEYA------TEVDVDFVRKAVRAIGRCAIKLE--RAAERC 349 (772)
Q Consensus 287 ~d~~~Ik~~kL~lL~~L~n~~--------Nv~~Il~-EL~~y~------~~~d~~~~~~~v~aIg~la~k~~--~~~~~~ 349 (772)
..-.-|-|.++-++..+.+.. ....++. .+...+ .-.|+|+..++-.--..+..++. +..+.|
T Consensus 240 s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y 319 (429)
T cd00256 240 STKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEY 319 (429)
T ss_pred hhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 112335566777777777743 1122222 222222 22577776554333333333322 223444
Q ss_pred HH-HHHHHHhhccchhHHHHHH-HHHHHHHhCcccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccCCHHHHHHHH
Q 004132 350 IS-VLLELIKIKVNYVVQEAII-VIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESF 427 (772)
Q Consensus 350 vd-~Ll~ll~~~~~~v~~e~i~-~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~~~~~L~~l 427 (772)
.. ..-..|+-..-|-.+.-|. ....+-.+ --.++..|++.|+.-.+|.+.++++.=||||....+....+++.+
T Consensus 320 ~~El~sg~L~WSp~H~se~FW~EN~~kf~~~----~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~l 395 (429)
T cd00256 320 KSELRSGRLHWSPVHKSEKFWRENADRLNEK----NYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQL 395 (429)
T ss_pred HHHHhcCCccCCCCCCCchHHHHHHHHHHhc----chHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHc
Confidence 33 2233344444454555554 33333221 135778888888766788889999999999999888777776642
Q ss_pred ------hhhCCCCCHHHHHHHHHHHHHHhhc
Q 004132 428 ------LESFPEEPAQVQLQLLTATVKLFLK 452 (772)
Q Consensus 428 ------~~~f~~e~~~vq~~lLta~~Kl~~~ 452 (772)
++-...++++||..+|.|+-|+...
T Consensus 396 g~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 396 GGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3344568999999999999998653
No 77
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.11 E-value=0.071 Score=56.58 Aligned_cols=181 Identities=17% Similarity=0.216 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH-HhcccchhhccC-CchhHHHHHHHHHHHHHhhC
Q 004132 194 REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR 271 (772)
Q Consensus 194 ~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~-~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~ 271 (772)
......++.+..++.+.++-|+..|.-+|.++.+ .+ .+.+..+. ..+.+-|+.+|+ .+..|+--+||.+..|+.-.
T Consensus 239 ~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD-g~-~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSD-GP-NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS 316 (526)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc-Cc-HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence 3344445555555666677777777777765432 11 12222221 133444677775 57789999999999987543
Q ss_pred h---hhhhh--hcceeee-ccCCcHhHHHHHHHHHHHhcccccHHHH--------HHHHHHhhhhccHHHHHHHHHHHHH
Q 004132 272 P---TILAH--EIKVFFC-KYNDPIYVKMEKLEIMIKLASDRNIDQV--------LLEFKEYATEVDVDFVRKAVRAIGR 337 (772)
Q Consensus 272 p---~~~~~--~~~if~~-~~~d~~~Ik~~kL~lL~~L~n~~Nv~~I--------l~EL~~y~~~~d~~~~~~~v~aIg~ 337 (772)
- .++.+ .++.|.. +.+.-..||+++-=.+..++ ..|.++| +.-|.+.++..+...++++.-+|..
T Consensus 317 D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT-AGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 317 DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT-AGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred ccceehheecccHHHHHHHhcChhhhhhhhhheeecccc-cCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11111 1222322 33333567877765555542 3344332 3345566677777788888888766
Q ss_pred HHHh---hhh-----hHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 004132 338 CAIK---LER-----AAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (772)
Q Consensus 338 la~k---~~~-----~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~ 377 (772)
.... -|. ...-|++-|.++|....+.+.+-+...+.++++
T Consensus 396 atsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 396 ATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred hhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 5432 111 122345556666666655555555555555543
No 78
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.10 E-value=0.14 Score=61.39 Aligned_cols=412 Identities=15% Similarity=0.173 Sum_probs=203.7
Q ss_pred CChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCC
Q 004132 73 IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (772)
Q Consensus 73 I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~ 152 (772)
...+.+-..+.+-..++.+|..|.||++++-=++.+.+.-++......+.+.+..|+.|..-.|+.+|+..+..+...-.
T Consensus 229 ~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 229 LPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred CChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 33455666778888999999999999999999999988777766666788899999999888999999998888765432
Q ss_pred CCcccccHHHHHHHHHHhhcCChhHHHHHH-----HHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhh
Q 004132 153 RPIFEITSHTLSKLLTALNECTEWGQVFIL-----DALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQME 227 (772)
Q Consensus 153 ~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL-----~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~ 227 (772)
... +..+.....+++...+. .|...+.. .+-..+.++ . .-......+...+++.-..+.++.++-.-.+..
T Consensus 309 ~~~-d~~~~~~~~l~~~~~d~-~~~v~~~~~~~~~~L~~~~~~~-~-~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~ 384 (759)
T KOG0211|consen 309 DDD-DVVKSLTESLVQAVEDG-SWRVSYMVADKFSELSSAVGPS-A-TRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLAC 384 (759)
T ss_pred Cch-hhhhhhhHHHHHHhcCh-hHHHHHHHhhhhhhHHHHhccc-c-CcccchhhHHHHhcchhhhhhHHhhcchHHHhh
Confidence 211 22222233333333332 34332221 111112220 0 000111222223333333333433333322211
Q ss_pred hcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhCh--hhhhhhcceee-eccCCcHhHHHHHHHHHHHh
Q 004132 228 LITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP--TILAHEIKVFF-CKYNDPIYVKMEKLEIMIKL 303 (772)
Q Consensus 228 ~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p--~~~~~~~~if~-~~~~d~~~Ik~~kL~lL~~L 303 (772)
+...+....-....+.+.+..+. .+...+|-.....+..+....| ..+.+....+. -+.++...|+.--.+.+..+
T Consensus 385 ~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 385 YLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred hcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 11111000000011122222222 2334444443333333322221 11222122222 23444555665555433221
Q ss_pred ---cccccHHHHHHHH----HHhhhhccHHHHHHHHHHHHHHHHhhh-h-hHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 004132 304 ---ASDRNIDQVLLEF----KEYATEVDVDFVRKAVRAIGRCAIKLE-R-AAERCISVLLELIKIKVNYVVQEAIIVIKD 374 (772)
Q Consensus 304 ---~n~~Nv~~Il~EL----~~y~~~~d~~~~~~~v~aIg~la~k~~-~-~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~ 374 (772)
-...++..+.+-+ .+...+..-..+.+++..|-.++.... . ..+.+-.++...+......+...+...+..
T Consensus 465 ~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 465 EEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPA 544 (759)
T ss_pred HhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence 1222233333222 233333333445556666666554321 1 112234444444445555666667777777
Q ss_pred HHHhCc--ccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 004132 375 IFRRYP--NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKL 449 (772)
Q Consensus 375 i~~~~p--~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~---~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl 449 (772)
++..+- .....++.++.....+- .-..|.+.+..+-+....... ..+++-.+.+--.+..++||.-++..+-|+
T Consensus 545 l~~~~G~~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i 623 (759)
T KOG0211|consen 545 LVETFGSEWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKI 623 (759)
T ss_pred HHHHhCcchhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHH
Confidence 766654 22344455544333220 112344455555555443332 345666666656677789999887777766
Q ss_pred hhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhc
Q 004132 450 FLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (772)
Q Consensus 450 ~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~ 490 (772)
--..........|..++..... +.|.|+|=||..-...+.
T Consensus 624 ~~~L~~~~~~~~v~pll~~L~~-d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 624 LKLLDESVRDEEVLPLLETLSS-DQELDVRYRAILAFGSIE 663 (759)
T ss_pred HhhcchHHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHHH
Confidence 4322211256677778776554 589999999987766654
No 79
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.98 Score=52.99 Aligned_cols=393 Identities=19% Similarity=0.211 Sum_probs=215.8
Q ss_pred HHHhhcCCCCHHH-HhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc-cc-cccccchHHHHH
Q 004132 50 TFVKDSQDPNPLI-RALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AE-LVEDRGFLESLK 126 (772)
Q Consensus 50 tl~kDl~~~np~i-ralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~-p~-~~~~~~~~~~L~ 126 (772)
.+++-|...+|.. ....=|-+ . -..|+-+++-.-+.+.|.++.|+++..|+-|++.+...- |. .- ++++..|.
T Consensus 60 ~LKN~L~akd~~~k~~~~qRWl-~-l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~w--p~li~~lv 135 (859)
T KOG1241|consen 60 QLKNSLTAKDPERKQQYQQRWL-Q-LPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQW--PELIVTLV 135 (859)
T ss_pred HHhhhhccCCHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhC--HHHHHHHH
Confidence 3455555555544 23444555 2 245777888888999999999999999999999998642 21 11 13455566
Q ss_pred HhhcCCChh-HHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhh------cCC-------------------------
Q 004132 127 DLISDNNPM-VVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN------ECT------------------------- 174 (772)
Q Consensus 127 ~lL~D~d~~-Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~------~~~------------------------- 174 (772)
....+..+. |..+++-++..||++-.+. ......+.+|.++. +.+
T Consensus 136 ~nv~~~~~~~~k~~slealGyice~i~pe---vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E 212 (859)
T KOG1241|consen 136 SNVGEEQASMVKESSLEALGYICEDIDPE---VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE 212 (859)
T ss_pred HhcccccchHHHHHHHHHHHHHHccCCHH---HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH
Confidence 666665555 7788888898888753221 12222333333321 111
Q ss_pred ------------------hhHHHHHHHHHhccccCCHHHHH-----HHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCC
Q 004132 175 ------------------EWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITS 231 (772)
Q Consensus 175 ------------------ew~qv~iL~~L~~~~~~~~~e~~-----~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~ 231 (772)
+-.|+..+.+|.+.-.-.-+... .+...-+...++.|..|.+.+|..-.... +
T Consensus 213 ~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstic----e 288 (859)
T KOG1241|consen 213 MERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTIC----E 288 (859)
T ss_pred hhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH----H
Confidence 11233333333221100000011 12222234567888888888887655322 1
Q ss_pred hHHHHHHHHhcccchhhcc--CCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHH---HHHHHHhccc
Q 004132 232 TDVVRNLCKKMAPPLVTLL--SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEK---LEIMIKLASD 306 (772)
Q Consensus 232 ~~~~~~l~~~~~~~L~~Ll--s~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~k---L~lL~~L~n~ 306 (772)
++ +. +.... .... ...|--.|.+..++..++. .+++--.+.=.+-++|+.++.+.+ |.+....|..
T Consensus 289 EE-iD-~~~e~----~e~~d~~~~p~~~~fa~~a~~~v~P---~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D 359 (859)
T KOG1241|consen 289 EE-ID-LAIEY----GEAVDQGLPPSSKYFARQALQDVVP---VLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD 359 (859)
T ss_pred HH-HH-HHHHH----HHHhhcCCCchhhHHHHHHHhHhhH---HHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc
Confidence 11 11 00000 0111 1123334555555544332 222111111123366777777665 6677777777
Q ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcc
Q 004132 307 RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAI-----KLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN 381 (772)
Q Consensus 307 ~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~-----k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~ 381 (772)
+=+..++.-+.+.++..|=..+..++-+.|.+=+ +.-+.....+..++.++.+..-.|.+.+.-.+..|....|+
T Consensus 360 ~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh
Confidence 7777777777777888888888888888776543 23334445577788888766666765554456666655553
Q ss_pred c-----H-HHHHHHHHHhcccCChHHHHHHHHHHHhhhcccc-----CC---------HHHHHHHHhhhCCC---CCHHH
Q 004132 382 T-----Y-ESIIATLCESLDTLDEPEAKASMIWIIGEYAERI-----DN---------ADELLESFLESFPE---EPAQV 438 (772)
Q Consensus 382 ~-----~-~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i-----~~---------~~~~L~~l~~~f~~---e~~~v 438 (772)
. + ...+..+.+-+. ++|..-..++|-+--+++.. .+ -++++..+++.-.. -....
T Consensus 440 ~~~n~~~l~~~l~~l~~gL~--DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNL 517 (859)
T KOG1241|consen 440 AIINQELLQSKLSALLEGLN--DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNL 517 (859)
T ss_pred hcccHhhhhHHHHHHHHHhh--hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhH
Confidence 2 1 223444444444 37877777888765544322 11 13566666654332 23567
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHH
Q 004132 439 QLQLLTATVKLFLKKPTEGPQQMIQVV 465 (772)
Q Consensus 439 q~~lLta~~Kl~~~~p~~~~~~~v~~v 465 (772)
|.++-.|++-+....|.+ +.++++++
T Consensus 518 R~AAYeALmElIk~st~~-vy~~v~~~ 543 (859)
T KOG1241|consen 518 RSAAYEALMELIKNSTDD-VYPMVQKL 543 (859)
T ss_pred HHHHHHHHHHHHHcCcHH-HHHHHHHH
Confidence 888888888887766654 55555444
No 80
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.05 E-value=1.7 Score=54.78 Aligned_cols=465 Identities=13% Similarity=0.181 Sum_probs=253.5
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHhccCCCcH-----HHHHHHHHHhhcCCCCHHHHhHHHHHhcCC--ChhhhHHHHHH
Q 004132 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDL-----AILAVNTFVKDSQDPNPLIRALAVRTMGCI--RVDKITEYLCD 84 (772)
Q Consensus 12 ~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl-----~lL~iNtl~kDl~~~np~iralALrtl~~I--~~~ei~~~l~~ 84 (772)
-.++..+..+...+|-=+-=.++.....+|.+ ..++| ..-+.|+.-.||-.||--+|.. ..++.++..+.
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~V---h~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~ 895 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAV---HGRLNDSSASVREAALDLVGRFVLSIPELIFQYYD 895 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHH---HHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHH
Confidence 34444455555555444444555555555442 23333 4456778899999999999975 47899999999
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh---cCCChhHHHHHHHHHHHHHhhCCCCcccccHH
Q 004132 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI---SDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (772)
Q Consensus 85 ~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL---~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~ 161 (772)
.|...+.|..--|||.|+--+..+|...|+... +.+.+.++| +|....|.--+.-.+.++.-..++.... ...
T Consensus 896 ~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~---i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d-~~~ 971 (1692)
T KOG1020|consen 896 QIIERILDTGVSVRKRVIKILRDICEETPDFSK---IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVND-QPA 971 (1692)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh---HHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccc-cHH
Confidence 999999999999999999999999999999876 455555555 5766556666666666665433222100 011
Q ss_pred HHHH-------HHHHhhcCChhHHHHHHHHHhccccCCH-----HH----HHHHHHHHhHhh-------------cCCCH
Q 004132 162 TLSK-------LLTALNECTEWGQVFILDALSRYKAADA-----RE----AENIVERVTPRL-------------QHANC 212 (772)
Q Consensus 162 ~~~~-------Ll~~L~~~~ew~qv~iL~~L~~~~~~~~-----~e----~~~il~~v~~~L-------------~~~n~ 212 (772)
..++ .-.+......|.+--+..+|..+.-... +. ....++.+..++ ...+.
T Consensus 972 ~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~ 1051 (1692)
T KOG1020|consen 972 KARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESE 1051 (1692)
T ss_pred HHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccch
Confidence 1111 1112223578888777777766542100 11 122333333222 23455
Q ss_pred HHHHHHHHHHHHhhhhcCChHHHH-HHHHhcccchhhccCC--chhHHHHHHHHHHHHHh---hChhhhhh----hccee
Q 004132 213 AVVLSAVKMILQQMELITSTDVVR-NLCKKMAPPLVTLLSA--EPEIQYVALRNINLIVQ---RRPTILAH----EIKVF 282 (772)
Q Consensus 213 aVv~eaik~i~~~~~~i~~~~~~~-~l~~~~~~~L~~Lls~--~~~iryvaL~~l~~i~~---~~p~~~~~----~~~if 282 (772)
.-+++++.++..+.. + .|.++. ..+..+.|=|.+=-++ +..+-|.++..+...+. .-++.|-. ++...
T Consensus 1052 ~~~~~~lstL~~Fsk-i-rP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~ 1129 (1692)
T KOG1020|consen 1052 VRLLAYLSTLFVFSK-I-RPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKR 1129 (1692)
T ss_pred hHHHHHHHHHHHHHh-c-CchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 677888887766532 1 232221 1111122211111121 23344444444444332 22333322 21111
Q ss_pred eeccCCcHhHHHHHHHHHHHhccc--ccHHHHHHHHHHhh------hhc-cH-------HHHHHHHHHHHHHHHhhh---
Q 004132 283 FCKYNDPIYVKMEKLEIMIKLASD--RNIDQVLLEFKEYA------TEV-DV-------DFVRKAVRAIGRCAIKLE--- 343 (772)
Q Consensus 283 ~~~~~d~~~Ik~~kL~lL~~L~n~--~Nv~~Il~EL~~y~------~~~-d~-------~~~~~~v~aIg~la~k~~--- 343 (772)
..+.+ ...-..+.-.+.++++. +|++.+-.-+..|. +.. +. .....++..||.++..+.
T Consensus 1130 i~k~g--~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~ 1207 (1692)
T KOG1020|consen 1130 IVKMG--MATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPK 1207 (1692)
T ss_pred HHhcc--hHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCC
Confidence 11111 11334566677888885 77776655444333 222 11 123456667787776431
Q ss_pred -------------hhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCccc--HHHHHHHHHHhcccCChHHH-HH---
Q 004132 344 -------------RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT--YESIIATLCESLDTLDEPEA-KA--- 404 (772)
Q Consensus 344 -------------~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~--~~~ii~~L~~~l~~~~~p~a-~~--- 404 (772)
...+.|+..|.-+.+.....++.-++..+..++-++|.. .+.+...+++.|.+...+.. +-
T Consensus 1208 ~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l 1287 (1692)
T KOG1020|consen 1208 PSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLL 1287 (1692)
T ss_pred ccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 234556666666677777778888899999988888875 34455555555543322222 11
Q ss_pred HHHHHH------------------------hhhcccc-----CC-----HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHh
Q 004132 405 SMIWII------------------------GEYAERI-----DN-----ADELLESFLESFPEEPAQVQLQLLTATVKLF 450 (772)
Q Consensus 405 ~~iwil------------------------GEy~~~i-----~~-----~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~ 450 (772)
...|+. +|-.+-- .+ ..-+++.+++.+.+.+..+|++.+. ++|+-
T Consensus 1288 ~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aik-vl~li 1366 (1692)
T KOG1020|consen 1288 QNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIK-VLKLI 1366 (1692)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHH-HHHHH
Confidence 112221 1110000 00 1235556667777788888887765 55555
Q ss_pred hcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhc
Q 004132 451 LKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (772)
Q Consensus 451 ~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~ 490 (772)
++..=-.-...+-+++.+. .+...+.|.||.+...=+.
T Consensus 1367 L~QGLVhP~~cvPtLIAL~--Tdp~~~~r~~Ad~LL~eid 1404 (1692)
T KOG1020|consen 1367 LNQGLVHPVHCVPTLIALE--TDPSQAIRHVADELLKEID 1404 (1692)
T ss_pred HHccCCCccchhhhheeec--CChHHHHHHHHHHHHHHHH
Confidence 5432100123566777653 3467889999988765443
No 81
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.02 E-value=0.061 Score=65.33 Aligned_cols=255 Identities=20% Similarity=0.231 Sum_probs=159.3
Q ss_pred chhHHHH-HhhcCCCc-chHHHHHHHHHHhccCCCc--HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh---------
Q 004132 9 SLFTDVV-NCMQTENL-ELKKLVYLYLINYAKSQPD--LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV--------- 75 (772)
Q Consensus 9 ~lf~~vi-~l~~s~~~-~lKrl~YL~l~~~~~~~~d--l~lL~iNtl~kDl~~~np~iralALrtl~~I~~--------- 75 (772)
.+|..++ .|+.+=+. ..|.-+-.-+..++..-.| ..=-+..-|.--++|+.+.||+.||+||+.+-.
T Consensus 421 ~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 421 VLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred eeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 3455544 35555333 3333333344444433222 233366777888899999999999999987631
Q ss_pred -hhhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhh------------------cccc--cccc-----------chH
Q 004132 76 -DKITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI------------------NAEL--VEDR-----------GFL 122 (772)
Q Consensus 76 -~ei~~~l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~------------------~p~~--~~~~-----------~~~ 122 (772)
.-..||+.|.+..++.| ...+||-+=|.|++++... +|+- ..+. ...
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~ 580 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE 580 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence 12458999999999999 8889999988888877432 1211 1111 112
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHh---ccc-cCCHHHHHH
Q 004132 123 ESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALS---RYK-AADAREAEN 198 (772)
Q Consensus 123 ~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~---~~~-~~~~~e~~~ 198 (772)
+....||.|..+.|..+.+-.+..+|.-=++. .-+.-.+.+|++-|++-++-+++...+-+. -|. ++. ..+-
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--~sey 656 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--VSEY 656 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee--HHHH
Confidence 34456889999999988888888877421110 011124789999999996667888877776 333 221 2234
Q ss_pred HHHHHhHhhcCCCHHHHHHHHHHHHHhhh--hcCChHHHHHHHHhcccchhhccCCchhHHHHHHHHHHHHHhhC
Q 004132 199 IVERVTPRLQHANCAVVLSAVKMILQQME--LITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRR 271 (772)
Q Consensus 199 il~~v~~~L~~~n~aVv~eaik~i~~~~~--~i~~~~~~~~l~~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~ 271 (772)
++..+..-|....++|+..|..++.-+.+ .+..+ .+..+.+-+.| .|...+.=||+.++..|..+.+.-
T Consensus 657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~-~v~~i~~~v~P---lL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP-AVKDILQDVLP---LLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH-HHHHHHHhhhh---heeCchHHHHHHHHHHHHHHHhhh
Confidence 55666667888899999888877754422 22222 23333333332 233456669999999998887654
No 82
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.88 E-value=0.025 Score=59.36 Aligned_cols=168 Identities=15% Similarity=0.189 Sum_probs=114.3
Q ss_pred CCCHHHHhHHHHHhcCCChh----hhHHH--HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHh-h
Q 004132 57 DPNPLIRALAVRTMGCIRVD----KITEY--LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL-I 129 (772)
Q Consensus 57 ~~np~iralALrtl~~I~~~----ei~~~--l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~l-L 129 (772)
+.+|.++..|+-+|++...- +++.. .++.|.+.|.+++|-||.+|+.|+..+--..+.......+++.+.+. +
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 46899999999999998743 33333 35778999999999999999999887653322221111255554443 3
Q ss_pred cC-CChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHH-----HHH
Q 004132 130 SD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIV-----ERV 203 (772)
Q Consensus 130 ~D-~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il-----~~v 203 (772)
.+ -|..|..+++.+|..+.-.+. ...+....+..++..|..-++-.|..+|++|..+.. ++.-..+++ ..+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~--~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~ 180 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTND--YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSF 180 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcc--hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHH
Confidence 43 477888899999988854321 223445567778888878888899999999998863 444444444 334
Q ss_pred hHhhcCC-CHHHHHHHHHHHHHhhh
Q 004132 204 TPRLQHA-NCAVVLSAVKMILQQME 227 (772)
Q Consensus 204 ~~~L~~~-n~aVv~eaik~i~~~~~ 227 (772)
..+++.. +..+++.++..+-++..
T Consensus 181 ~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 181 LSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHccCCccHHHHHHHHHHHHHHH
Confidence 4445443 56888888887776543
No 83
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.82 E-value=0.0047 Score=54.82 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=56.2
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHH
Q 004132 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAV 141 (772)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av 141 (772)
..+..+.++++|.+++.|+++.||-.|+.|++.+.+...+.+-. .++++.|.+++.|.|+.|..+|-
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence 56777889999999999999999999999999999887655432 23567778889999999998873
No 84
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.72 E-value=0.018 Score=69.66 Aligned_cols=205 Identities=15% Similarity=0.175 Sum_probs=135.8
Q ss_pred cchhHHHHHhhcCCCcchHHHHHH-HHHHhccCCCcHHHHHHHH-----HHhhcCCCCHHHHhHHHHHhcCC----Chhh
Q 004132 8 SSLFTDVVNCMQTENLELKKLVYL-YLINYAKSQPDLAILAVNT-----FVKDSQDPNPLIRALAVRTMGCI----RVDK 77 (772)
Q Consensus 8 s~lf~~vi~l~~s~~~~lKrl~YL-~l~~~~~~~~dl~lL~iNt-----l~kDl~~~np~iralALrtl~~I----~~~e 77 (772)
..+||+.-.+...++-+.-|++|- -+..+|+.--- .+..+.. +.+|.++. ++..- ....
T Consensus 506 eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r-Fle~~q~~~~~g~~n~~nse----------t~~~~~~~~~~~~ 574 (1431)
T KOG1240|consen 506 EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR-FLELTQELRQAGMLNDPNSE----------TAPEQNYNTELQA 574 (1431)
T ss_pred hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH-HHHHHHHHHhcccccCcccc----------cccccccchHHHH
Confidence 357788777777767777888876 33333332211 1122222 33343332 22222 2345
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCccc
Q 004132 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE 157 (772)
Q Consensus 78 i~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~ 157 (772)
+...+...+..+|.|+.|+||++-...++.++...-..--+.-++..|...|+|+|+..+++-.-.+..++---+ +.
T Consensus 575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~r 651 (1431)
T KOG1240|consen 575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WR 651 (1431)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---ee
Confidence 556667778899999999999999999888887654443334568999999999999988865544443321101 11
Q ss_pred -ccHHHHHHHHHHhhcCChhHHHHHHHHHhccccC---CHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhh
Q 004132 158 -ITSHTLSKLLTALNECTEWGQVFILDALSRYKAA---DAREAENIVERVTPRLQHANCAVVLSAVKMILQQM 226 (772)
Q Consensus 158 -l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~---~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~ 226 (772)
...-.+.-|...|.|..|+.-+..|.+|..+... ......+|++.+.|+|-|-|.=|..+++-.|....
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHH
Confidence 2223455666788999999999999999876532 23456789999999999999988888887776543
No 85
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=2.2 Score=51.99 Aligned_cols=75 Identities=27% Similarity=0.310 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcC-CChhHHHHHHHHHHHHHhh
Q 004132 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-NNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D-~d~~Vv~~av~aL~eI~~~ 150 (772)
+|+++|.+++.+...++|.+..||..||-+++|+....|-.+-+ ..+..+.++++- .++..-++|+.+|.|+...
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALR 410 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999888733322 245555556653 2477888999999998764
No 86
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.68 E-value=0.015 Score=66.42 Aligned_cols=132 Identities=18% Similarity=0.250 Sum_probs=110.9
Q ss_pred CCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-----hhhhHH-------HHHHHHHh
Q 004132 21 ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-----VDKITE-------YLCDPLQR 88 (772)
Q Consensus 21 ~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~-----~~ei~~-------~l~~~v~~ 88 (772)
+|..--|-+-+++..+..-.|.+++---+.|.+-|.+..-..||.-+...+++. .++|.+ .++.-+..
T Consensus 274 ~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~E 353 (1128)
T COG5098 274 PDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVE 353 (1128)
T ss_pred ccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHH
Confidence 455555788899999999999999999999999999999999999999999974 455665 56677788
Q ss_pred hhCCCChHHHHHHHHHHHHHHhhccccccc-cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCC
Q 004132 89 CLKDDDPYVRKTAAICVAKLYDINAELVED-RGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (772)
Q Consensus 89 ~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~-~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~ 152 (772)
-+.|.+||+|-||...+.|+|+.+...... ..++......|.|+...|+.+|+..+..+.-..|
T Consensus 354 Rl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 354 RLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999987665542 4577788889999999999999999988765443
No 87
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.66 E-value=0.0046 Score=48.57 Aligned_cols=49 Identities=31% Similarity=0.388 Sum_probs=38.4
Q ss_pred HHHHhHHHHHhcCCC------hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHH
Q 004132 60 PLIRALAVRTMGCIR------VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKL 108 (772)
Q Consensus 60 p~iralALrtl~~I~------~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl 108 (772)
|.+|..|+.+||.+. .....+.+++.+.++|.|+++.||.+|+.|+++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 568888999998764 2334567788888888998889999999888754
No 88
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.59 E-value=2 Score=49.01 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=74.1
Q ss_pred hhHHHHHhhcC--CCcc-----hHHHHHHHHHHhccCCCcHHHHHH-HHHHhhcCCCCHHHHhHHHHHhcCCCh------
Q 004132 10 LFTDVVNCMQT--ENLE-----LKKLVYLYLINYAKSQPDLAILAV-NTFVKDSQDPNPLIRALAVRTMGCIRV------ 75 (772)
Q Consensus 10 lf~~vi~l~~s--~~~~-----lKrl~YL~l~~~~~~~~dl~lL~i-Ntl~kDl~~~np~iralALrtl~~I~~------ 75 (772)
..|..++++.. +|+. .-+-+--.+..|+...-|..+--| --+...++++|..-|-.|.-++|++..
T Consensus 322 vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~ 401 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDC 401 (858)
T ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHH
Confidence 45666676644 3332 334444455556655555433222 234567899999999999999999852
Q ss_pred -hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc
Q 004132 76 -DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (772)
Q Consensus 76 -~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~ 117 (772)
..+++...|-|.....|+.-.|+.++|.|++++...-|+.+.
T Consensus 402 lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~ 444 (858)
T COG5215 402 LTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIIS 444 (858)
T ss_pred HHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcC
Confidence 245566677888888999999999999999999877665543
No 89
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.55 E-value=0.02 Score=65.49 Aligned_cols=173 Identities=22% Similarity=0.284 Sum_probs=113.7
Q ss_pred hhHHHH-HhhcC----CCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhcCCCh--hhhHHH
Q 004132 10 LFTDVV-NCMQT----ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIRV--DKITEY 81 (772)
Q Consensus 10 lf~~vi-~l~~s----~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~-~~np~iralALrtl~~I~~--~ei~~~ 81 (772)
-|-.+| ...++ +|.++.+.+|+.+..+.--..+...---..|..-++ +++|.||+.|+-.||.+.+ ...++.
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de 971 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE 971 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH
Confidence 344444 44444 677899999997766543332222222233344443 8999999999999998752 233344
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHH
Q 004132 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (772)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~ 161 (772)
....+-+-|.|.+.-|||++.+.+.-+.-.. .++-.|....+..+|.|.|..+---|=..+.++...+..- +.
T Consensus 972 ~t~yLyrrL~De~~~V~rtclmti~fLilag--q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt~-yn---- 1044 (1128)
T COG5098 972 HTHYLYRRLGDEDADVRRTCLMTIHFLILAG--QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNTM-YN---- 1044 (1128)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc--ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccch-hh----
Confidence 4444778899999999999999998777543 3333467889999999999998888888899998776421 11
Q ss_pred HHHHHHHHhhcCChhHH---HHHHHHHhccc
Q 004132 162 TLSKLLTALNECTEWGQ---VFILDALSRYK 189 (772)
Q Consensus 162 ~~~~Ll~~L~~~~ew~q---v~iL~~L~~~~ 189 (772)
.+..+...|...++-+| ..|+++|..|.
T Consensus 1045 ~fidifs~ls~~ae~g~e~fk~II~FLt~fI 1075 (1128)
T COG5098 1045 GFIDIFSTLSSDAENGQEPFKLIIGFLTDFI 1075 (1128)
T ss_pred hhHHHHHHcCchhhcCCCcHHHHHHHHHHHH
Confidence 12223344443333333 36778887775
No 90
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.47 E-value=0.0046 Score=42.57 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=25.5
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhh
Q 004132 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDI 111 (772)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~ 111 (772)
++|.+.+++.|++|.||..|+.|++++.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999998763
No 91
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=1.7 Score=51.34 Aligned_cols=132 Identities=19% Similarity=0.175 Sum_probs=85.1
Q ss_pred hcCCCcchHHHHHHHHHHhccCCCcH-H----HHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh---------------
Q 004132 18 MQTENLELKKLVYLYLINYAKSQPDL-A----ILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK--------------- 77 (772)
Q Consensus 18 ~~s~~~~lKrl~YL~l~~~~~~~~dl-~----lL~iNtl~kDl~~~np~iralALrtl~~I~~~e--------------- 77 (772)
-.+.=++.||=+-+++.-+++...+. . -=.|+++++|-. ||.+...||.||+.+-..+
T Consensus 32 essTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~ 109 (970)
T KOG0946|consen 32 ESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDL 109 (970)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--CHHHHHHHHHHHHHHHhcCcchhhcccchhhhHH
Confidence 34566789999999999999876542 1 235688888865 6788889999998875332
Q ss_pred ---hHH------HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc-----cchHHHHHHhhcCCChhHHHHHHHH
Q 004132 78 ---ITE------YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-----RGFLESLKDLISDNNPMVVANAVAA 143 (772)
Q Consensus 78 ---i~~------~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~-----~~~~~~L~~lL~D~d~~Vv~~av~a 143 (772)
+++ ..+..+...+...+-|||..|+--+..+.+.-|..+.+ +.=+..|.++|.|...-++-.|+..
T Consensus 110 g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLl 189 (970)
T KOG0946|consen 110 GLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILL 189 (970)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHH
Confidence 111 22344555566677777777777666666655543322 1224566666777666666666666
Q ss_pred HHHHHhhC
Q 004132 144 LAEIEENS 151 (772)
Q Consensus 144 L~eI~~~~ 151 (772)
|+++...+
T Consensus 190 L~eL~k~n 197 (970)
T KOG0946|consen 190 LSELVKDN 197 (970)
T ss_pred HHHHHccC
Confidence 66665543
No 92
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=2.1 Score=46.22 Aligned_cols=208 Identities=15% Similarity=0.177 Sum_probs=123.6
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHh--ccCCCcHHHH--HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhH------
Q 004132 10 LFTDVVNCMQTENLELKKLVYLYLINY--AKSQPDLAIL--AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKIT------ 79 (772)
Q Consensus 10 lf~~vi~l~~s~~~~lKrl~YL~l~~~--~~~~~dl~lL--~iNtl~kDl~~~np~iralALrtl~~I~~~ei~------ 79 (772)
....++++-.++|...+|-.-=++.++ .+++....+- .+..+..-+.+.|+.+|--+-.++++|.+..-.
T Consensus 168 aL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq 247 (550)
T KOG4224|consen 168 ALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ 247 (550)
T ss_pred chhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 344455666666666665433333333 2222211110 122356677899999999999999999876544
Q ss_pred --HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc---cccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC
Q 004132 80 --EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN---AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (772)
Q Consensus 80 --~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~---p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~ 154 (772)
+.+++.+..++.|+++-|+--|.+|+..+.... -+.++ .+-++.+.+||.+.---.+.+.++.+..|.-+....
T Consensus 248 aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe 326 (550)
T KOG4224|consen 248 AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE 326 (550)
T ss_pred cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc
Confidence 347888999999999999999999998876321 12233 466789999997766555666677775554332111
Q ss_pred cccccHHHHHHHHHHhh-cCChhHHHHHHHHHhccccCCHHHHHH-----HHHHHhHhhcCCCHHHHHHH
Q 004132 155 IFEITSHTLSKLLTALN-ECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSA 218 (772)
Q Consensus 155 ~~~l~~~~~~~Ll~~L~-~~~ew~qv~iL~~L~~~~~~~~~e~~~-----il~~v~~~L~~~n~aVv~ea 218 (772)
..-.....++.|++.|. .-+|-.|+.....|+.+.......... .++.+..++....-+|.-+-
T Consensus 327 ~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei 396 (550)
T KOG4224|consen 327 VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI 396 (550)
T ss_pred cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence 11111223444555443 345668888888888776433322222 23445555555554554443
No 93
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.25 E-value=0.0033 Score=49.40 Aligned_cols=53 Identities=32% Similarity=0.427 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHH
Q 004132 95 PYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEI 147 (772)
Q Consensus 95 pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av~aL~eI 147 (772)
|.||..|+.+++.+....++..+. .+.++.|..+|.|.++.|+.+|+.+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 689999999999877666655443 24678888999999999999999988654
No 94
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.25 E-value=0.099 Score=53.83 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=34.9
Q ss_pred hhccHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCc
Q 004132 321 TEVDVDFVRKAVRAIGRCAIKL----ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYP 380 (772)
Q Consensus 321 ~~~d~~~~~~~v~aIg~la~k~----~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p 380 (772)
.+....+.+.++..++.++... ++..+.++..|++.+..+...+.+.+...+..++...+
T Consensus 63 ~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 63 SDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS 126 (228)
T ss_dssp -HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC
Confidence 3344456677777777777654 44555666666666666666677777777777776655
No 95
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.73 Score=54.60 Aligned_cols=189 Identities=15% Similarity=0.136 Sum_probs=123.6
Q ss_pred HHHHhhcCCC-CHHHHhHHHHHhcCC---Chhh-----hHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhccccc--
Q 004132 49 NTFVKDSQDP-NPLIRALAVRTMGCI---RVDK-----ITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELV-- 116 (772)
Q Consensus 49 Ntl~kDl~~~-np~iralALrtl~~I---~~~e-----i~~~l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~~p~~~-- 116 (772)
+.+..-|+.. +|..+--||.-||.+ ++++ .++.++|.+..+|+| .++-+---|+-|+..|+...|..+
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 5555566554 899999999988864 4444 347889999999999 778899999999999999999743
Q ss_pred -cccchHHHHHH-hhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccc----c
Q 004132 117 -EDRGFLESLKD-LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYK----A 190 (772)
Q Consensus 117 -~~~~~~~~L~~-lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~----~ 190 (772)
.+.+.++.|.. |+.=+---|.-.++.||..|....+..++.- ..+...|..|.-++--.|-..|-+.++.+ +
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~A--G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQA--GALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33455666644 4433444566678888888877665443322 22344444444445556766666666554 3
Q ss_pred CCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcC-ChHHHHHHH
Q 004132 191 ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT-STDVVRNLC 239 (772)
Q Consensus 191 ~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~-~~~~~~~l~ 239 (772)
++....-+.+..+.++|++.+.-++-.+.-+++++.+... .++.+++++
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~ 377 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLC 377 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHh
Confidence 3344445666778888988887666665556655443322 456666543
No 96
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.20 E-value=2.6 Score=50.78 Aligned_cols=322 Identities=15% Similarity=0.167 Sum_probs=179.5
Q ss_pred HHHHHhccCC-CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh----hhhHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 004132 31 LYLINYAKSQ-PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV----DKITEYLCDPLQRCLKDDDPYVRKTAAICV 105 (772)
Q Consensus 31 L~l~~~~~~~-~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~----~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l 105 (772)
++...|.... +.+-.-.-+.++.-++|.+|.+|-.+-+-++.+.. ......+.+....+..|...-||-.|.-++
T Consensus 221 lf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~ 300 (759)
T KOG0211|consen 221 LFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESL 300 (759)
T ss_pred hhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHH
Confidence 3444444444 22333344667788899999999999999999863 334455677788999999999999999998
Q ss_pred HHHHhhcccc-ccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC-cccccHHHHHHHHHHhhcCChhH------
Q 004132 106 AKLYDINAEL-VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWG------ 177 (772)
Q Consensus 106 ~kl~~~~p~~-~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~-~~~l~~~~~~~Ll~~L~~~~ew~------ 177 (772)
..+....... =....+.+.+.....|.+..|.......+.++...=++. ......+.+..++ ...+|.
T Consensus 301 ~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~----~~~~~e~r~a~a 376 (759)
T KOG0211|consen 301 VSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLL----KDEEWEVRYAIA 376 (759)
T ss_pred HHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHh----cchhhhhhHHhh
Confidence 8887654332 111246788888889999998888777777776532211 1111122222222 234442
Q ss_pred -HHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC-Cchh
Q 004132 178 -QVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPE 255 (772)
Q Consensus 178 -qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls-~~~~ 255 (772)
++..+...-++.+.-.--...++..+..+....|.-|.-..+..++.+.+.++.+..+. -..+.+...++ ..+.
T Consensus 377 ~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~----~llp~~~~~l~de~~~ 452 (759)
T KOG0211|consen 377 KKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTIS----ELLPLLIGNLKDEDPI 452 (759)
T ss_pred cchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCcc----ccChhhhhhcchhhHH
Confidence 22222222222111111112334555555556666666666655655444333222211 13333334444 3566
Q ss_pred HHHHHHHHHHHHHhhCh----hhh-hhhcceeeeccCCc-HhHHHHHHHHHHHhcccccHHHHHHHHH----HhhhhccH
Q 004132 256 IQYVALRNINLIVQRRP----TIL-AHEIKVFFCKYNDP-IYVKMEKLEIMIKLASDRNIDQVLLEFK----EYATEVDV 325 (772)
Q Consensus 256 iryvaL~~l~~i~~~~p----~~~-~~~~~if~~~~~d~-~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~----~y~~~~d~ 325 (772)
+|--....+..+..... ... +.++..+-++..|. ..+|...++-+-.++...=.+-.-..+. .|+.+...
T Consensus 453 V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~ 532 (759)
T KOG0211|consen 453 VRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVY 532 (759)
T ss_pred HHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHH
Confidence 66665555544433321 111 12233333443332 6677777877777766554333333333 44555566
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHhhccc
Q 004132 326 DFVRKAVRAIGRCAIKLERAAERCISVLL-ELIKIKVN 362 (772)
Q Consensus 326 ~~~~~~v~aIg~la~k~~~~~~~~vd~Ll-~ll~~~~~ 362 (772)
++++.+.+.+..++.++. .+|+...++ +++...++
T Consensus 533 ~Ir~~aa~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q 568 (759)
T KOG0211|consen 533 SIREAAARNLPALVETFG--SEWARLEEIPKLLAMDLQ 568 (759)
T ss_pred HHHHHHHHHhHHHHHHhC--cchhHHHhhHHHHHHhcC
Confidence 788888888888998886 667766544 34444333
No 97
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.97 E-value=2 Score=51.40 Aligned_cols=235 Identities=18% Similarity=0.250 Sum_probs=136.9
Q ss_pred HHhHHHHHhcCCChh----hhHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhh---ccccccccchHHHH-HHhhcCC
Q 004132 62 IRALAVRTMGCIRVD----KITEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI---NAELVEDRGFLESL-KDLISDN 132 (772)
Q Consensus 62 iralALrtl~~I~~~----ei~~~l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~---~p~~~~~~~~~~~L-~~lL~D~ 132 (772)
+.+.-+-..+..+.. +....+...++..+.. ..|..--+|..++.|+-.. +|+.... |.... ..+..|.
T Consensus 426 ~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~ 503 (1005)
T KOG2274|consen 426 IQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDV 503 (1005)
T ss_pred HHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCC
Confidence 444445555555533 4445555555665554 6777666999999987764 4444443 44433 3344588
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhH-----hh
Q 004132 133 NPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP-----RL 207 (772)
Q Consensus 133 d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~-----~L 207 (772)
-+.+...|+.+++..|. ++.+..+.+..+.-|+....+.++-.-.-+++.|...+.-|++.+...=+.+.| ++
T Consensus 504 ~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYCK--VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFL 581 (1005)
T ss_pred CCchhHHHHHHHHhccC--ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHH
Confidence 88999999999988873 334455666666666666666666667777777776665566555433333333 23
Q ss_pred cCCCHHHHHHHHHHHH-HhhhhcCChHHHHHHHHhcccchhhccC-C----chhHHHHHHHHHHHHHhhChhhhh-----
Q 004132 208 QHANCAVVLSAVKMIL-QQMELITSTDVVRNLCKKMAPPLVTLLS-A----EPEIQYVALRNINLIVQRRPTILA----- 276 (772)
Q Consensus 208 ~~~n~aVv~eaik~i~-~~~~~i~~~~~~~~l~~~~~~~L~~Lls-~----~~~iryvaL~~l~~i~~~~p~~~~----- 276 (772)
+.++--++.+-+.-++ .++. ...-...++.+.+|.|+..+. + .+.....++..|..+++..|.-+.
T Consensus 582 k~s~DP~V~~~~qd~f~el~q---~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~ 658 (1005)
T KOG2274|consen 582 KYSEDPQVASLAQDLFEELLQ---IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC 658 (1005)
T ss_pred HhcCCchHHHHHHHHHHHHHH---HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence 4433223333333322 2211 112222355678888888773 2 368999999999988887653222
Q ss_pred ----hhcceeeeccCCcHhHHHHHHHHHHHhcc
Q 004132 277 ----HEIKVFFCKYNDPIYVKMEKLEIMIKLAS 305 (772)
Q Consensus 277 ----~~~~if~~~~~d~~~Ik~~kL~lL~~L~n 305 (772)
+-.++. +.+||...-..+=|.|-.+.+
T Consensus 659 ~~FpaVak~t--lHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 659 YAFPAVAKIT--LHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHhHHhHhhe--eecCChHHHHhHHHHHHHHHh
Confidence 222322 455665555555555555543
No 98
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.94 E-value=2.8 Score=48.63 Aligned_cols=119 Identities=19% Similarity=0.244 Sum_probs=77.6
Q ss_pred CHHHHhHHHHHhcCC--ChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhH
Q 004132 59 NPLIRALAVRTMGCI--RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (772)
Q Consensus 59 np~iralALrtl~~I--~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V 136 (772)
++-.+-||-..+... .=|++.+.-+..+..++.|.+.-||+.|+-.+..+++-+|+.+.. ..+.|.+||...++..
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--vaDvL~QlL~tdd~~E 112 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--VADVLVQLLQTDDPVE 112 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--HHHHHHHHTT---HHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--HHHHHHHHHhcccHHH
Confidence 455555555555554 247788888888999999999999999999999999999999875 8999999999877766
Q ss_pred HHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhh---cCChhHHHHHHHHHh
Q 004132 137 VANAVAALAEIEENSSRPIFEITSHTLSKLLTALN---ECTEWGQVFILDALS 186 (772)
Q Consensus 137 v~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~---~~~ew~qv~iL~~L~ 186 (772)
+...=.+|.++...++. .++.-|++.+. ..++-.+-++|.+|+
T Consensus 113 ~~~v~~sL~~ll~~d~k-------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 113 LDAVKNSLMSLLKQDPK-------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHHHHHHHHHHH-HH-------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcH-------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 55554555555554432 24556666654 456777778888775
No 99
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.94 E-value=0.11 Score=62.65 Aligned_cols=195 Identities=17% Similarity=0.190 Sum_probs=139.3
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc-ccccc-cchHH-HHHHhhcCCChhHHHHHHHHHHHHHhhCC
Q 004132 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVED-RGFLE-SLKDLISDNNPMVVANAVAALAEIEENSS 152 (772)
Q Consensus 76 ~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p-~~~~~-~~~~~-~L~~lL~D~d~~Vv~~av~aL~eI~~~~~ 152 (772)
.++..-+.+.+...+.|+++-=|+.|+..+.+...-.. +..+. .+.+- .++-.+.|.|-.|+..|+..|..|+...+
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 35666677788999999999999999999999987655 22221 12222 23344679999999999999999998765
Q ss_pred CCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCCh
Q 004132 153 RPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITST 232 (772)
Q Consensus 153 ~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~ 232 (772)
..........+..++..+.+--....-.++.++..+.. .--..++.+.+...++|.|+.+.-+|...+-.++......
T Consensus 328 ~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n--s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN--STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 44344445566777777777777777777777776654 2235577888899999999999999988877665443311
Q ss_pred HHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhCh
Q 004132 233 DVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP 272 (772)
Q Consensus 233 ~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p 272 (772)
..-+...+.+++.++...+ .+.++|-++++.+..+.+.+-
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 1112233345666666664 689999999999999887764
No 100
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.92 E-value=2.5 Score=47.91 Aligned_cols=322 Identities=16% Similarity=0.190 Sum_probs=167.5
Q ss_pred HHHHHhhcCCh---hHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcC-----CCHHHHHHHHHHHHHhhhhcCChH---
Q 004132 165 KLLTALNECTE---WGQVFILDALSRYKAADAREAENIVERVTPRLQH-----ANCAVVLSAVKMILQQMELITSTD--- 233 (772)
Q Consensus 165 ~Ll~~L~~~~e---w~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~-----~n~aVv~eaik~i~~~~~~i~~~~--- 233 (772)
.++..|.+.++ |.-.++|++|..++.. ..-.+.++.++...+.. .+.......+.++.+.++......
T Consensus 3 ~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~-~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~ 81 (415)
T PF12460_consen 3 ALLALLPDSDSSTDSNYERILEALAALSTS-PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE 81 (415)
T ss_pred hHHhhCCCCCCcchhHHHHHHHHHHHHHCC-hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence 45666665443 7788888888887653 22233333344443321 255666777777766554322111
Q ss_pred HHHHHHHh-cccchhhcc-C---Cc----hhHHHHHHHHHHHHHhhCh-----hhhhhhcceee---------eccCCcH
Q 004132 234 VVRNLCKK-MAPPLVTLL-S---AE----PEIQYVALRNINLIVQRRP-----TILAHEIKVFF---------CKYNDPI 290 (772)
Q Consensus 234 ~~~~l~~~-~~~~L~~Ll-s---~~----~~iryvaL~~l~~i~~~~p-----~~~~~~~~if~---------~~~~d~~ 290 (772)
....+..+ +.+.+..+. + .+ +.+-..+-+.+..+++.-+ +++......|. ...+...
T Consensus 82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~ 161 (415)
T PF12460_consen 82 DNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTIS 161 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccc
Confidence 11111221 444444332 1 11 2222223344444544432 23333333332 0111000
Q ss_pred hHHHHHHHHHHHhc-------ccccHHHHHHHHHHhhhhcc-HHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHH-hh
Q 004132 291 YVKMEKLEIMIKLA-------SDRNIDQVLLEFKEYATEVD-VDFVRKAVRAIGRCAIKLERA--AERCISVLLELI-KI 359 (772)
Q Consensus 291 ~Ik~~kL~lL~~L~-------n~~Nv~~Il~EL~~y~~~~d-~~~~~~~v~aIg~la~k~~~~--~~~~vd~Ll~ll-~~ 359 (772)
....+.+-++.++. .-.+...+++++.+.+...+ ...+..+.+.++.++.|++.. .+..++.+..-+ ..
T Consensus 162 ~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~ 241 (415)
T PF12460_consen 162 EQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSS 241 (415)
T ss_pred cccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhccc
Confidence 12233333333332 22256679999998876554 445556678889999997543 344555554444 12
Q ss_pred ccchhHHHHHH----HHHHHHHhCcccHHHHHHHHHHhcccCCh-HHHHHHHHHHHhhhccccC---CH-----------
Q 004132 360 KVNYVVQEAII----VIKDIFRRYPNTYESIIATLCESLDTLDE-PEAKASMIWIIGEYAERID---NA----------- 420 (772)
Q Consensus 360 ~~~~v~~e~i~----~l~~i~~~~p~~~~~ii~~L~~~l~~~~~-p~a~~~~iwilGEy~~~i~---~~----------- 420 (772)
........++. ..|-++.|+.......+..|++.+++-.- ..+-.+.--+++++.+... ++
T Consensus 242 ~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F 321 (415)
T PF12460_consen 242 EDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF 321 (415)
T ss_pred CCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH
Confidence 22222333333 33555555444556678888888865221 1122333445566443321 11
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC----ChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHh
Q 004132 421 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE----GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (772)
Q Consensus 421 ~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~----~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll 489 (772)
.+++..+++.|...+.+.|...|+|+.-+.-..|.+ ...+++.-+++ +. +..|.+++--+......+
T Consensus 322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlq-sL-~~~~~~v~~s~L~tL~~~ 392 (415)
T PF12460_consen 322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQ-SL-SLPDADVLLSSLETLKMI 392 (415)
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHH
Confidence 356677788888877789999999999998888853 13444555555 33 567888887776655443
No 101
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.79 E-value=0.53 Score=50.78 Aligned_cols=154 Identities=16% Similarity=0.218 Sum_probs=102.9
Q ss_pred HHHHHHHH-HhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHH
Q 004132 310 DQVLLEFK-EYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIA 388 (772)
Q Consensus 310 ~~Il~EL~-~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~ 388 (772)
..+++.|. .-++..|..+|+.+++++|.++.--...+..++..+...++.+.+.|.-.++..+.|++..|.-.
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~------ 98 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID------ 98 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch------
Confidence 37777776 45678889999999999999998777888889999999997666677777888888888776521
Q ss_pred HHHHhcccCChHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh
Q 004132 389 TLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN 468 (772)
Q Consensus 389 ~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~ 468 (772)
.++....+. .-.....+++.+.+.+..+++++|..+...++||++..--.+...++..++-.
T Consensus 99 ----~~~~~~~~~--------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~ 160 (298)
T PF12719_consen 99 ----IFDSESDND--------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLL 160 (298)
T ss_pred ----hccchhccC--------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 111111111 11124456666666666678899999999999998865432114555555443
Q ss_pred hhc--CCCChHHHhhHHHHHH
Q 004132 469 ATV--ETDNPDLRDRAYIYWR 487 (772)
Q Consensus 469 ~~~--~s~~~dvrdRA~~y~~ 487 (772)
.+. ..+|..+||-=..+..
T Consensus 161 yF~p~t~~~~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 161 YFNPSTEDNQRLRQCLSVFFP 181 (298)
T ss_pred HcCcccCCcHHHHHHHHHHHH
Confidence 221 2345677774333333
No 102
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=3.4 Score=44.13 Aligned_cols=231 Identities=19% Similarity=0.252 Sum_probs=128.5
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc-------cccccchHHHHHHhhcCCChhHHHHHHHHHHHH
Q 004132 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE-------LVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (772)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~-------~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI 147 (772)
...+++.+.+.+++.|.+.+.-|+--|+-.++++...+.. .+.+.++.+.+..++..+|..|.-+|+-.+..|
T Consensus 76 gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri 155 (524)
T KOG4413|consen 76 GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI 155 (524)
T ss_pred chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3456788889999999999999999888888888765431 222445667777778888888888888888777
Q ss_pred HhhCCC--Cccc---ccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHH-----HHHHHHhHhhcC-CCHHHHH
Q 004132 148 EENSSR--PIFE---ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQH-ANCAVVL 216 (772)
Q Consensus 148 ~~~~~~--~~~~---l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~-----~il~~v~~~L~~-~n~aVv~ 216 (772)
...... .+|+ +..-+++.|- -.|+...++.++.++-....-+++.+. -+++.+..-++- .+.-|+.
T Consensus 156 alfpaaleaiFeSellDdlhlrnla---akcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVia 232 (524)
T KOG4413|consen 156 ALFPAALEAIFESELLDDLHLRNLA---AKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIA 232 (524)
T ss_pred HhcHHHHHHhcccccCChHHHhHHH---hhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehh
Confidence 532110 1111 0111222222 257888888888877665433333222 234444443443 3445666
Q ss_pred HHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHH
Q 004132 217 SAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEK 296 (772)
Q Consensus 217 eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~k 296 (772)
.|+..+..+... +..-+|++-..+..++. ++ ..-.+.++|=|.++
T Consensus 233 nciElvteLaet------------------------eHgreflaQeglIdlic---nI--------IsGadsdPfekfra 277 (524)
T KOG4413|consen 233 NCIELVTELAET------------------------EHGREFLAQEGLIDLIC---NI--------ISGADSDPFEKFRA 277 (524)
T ss_pred hHHHHHHHHHHH------------------------hhhhhhcchhhHHHHHH---HH--------hhCCCCCcHHHHHH
Confidence 666665544321 11111111111111000 00 01133445566666
Q ss_pred HHHHHHhcccccHHHHHHH-----HH-------HhhhhccHHHHHHHHHHHHHHHHhhh
Q 004132 297 LEIMIKLASDRNIDQVLLE-----FK-------EYATEVDVDFVRKAVRAIGRCAIKLE 343 (772)
Q Consensus 297 L~lL~~L~n~~Nv~~Il~E-----L~-------~y~~~~d~~~~~~~v~aIg~la~k~~ 343 (772)
|-...++-...|+-.+..| +. +.+..-|++....+|.++|.++...+
T Consensus 278 lmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 278 LMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred HHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc
Confidence 6666666655555543322 22 33445577888888888888886543
No 103
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=1.1 Score=55.01 Aligned_cols=220 Identities=17% Similarity=0.192 Sum_probs=132.3
Q ss_pred CCCccchhHHHHHhhcCCC-cchH---HHHHH-HHHHhccCCCcHHHHHHHHHHh-hcCCCCHHHHhHHHHHhcCCC---
Q 004132 4 GKDVSSLFTDVVNCMQTEN-LELK---KLVYL-YLINYAKSQPDLAILAVNTFVK-DSQDPNPLIRALAVRTMGCIR--- 74 (772)
Q Consensus 4 G~Dvs~lf~~vi~l~~s~~-~~lK---rl~YL-~l~~~~~~~~dl~lL~iNtl~k-Dl~~~np~iralALrtl~~I~--- 74 (772)
+.|+.-.+.+-+.+.++.. -..+ .+-.| -+.-.+...++-.+-..+++.. +-++.++-+|.-|-|.|..+.
T Consensus 606 ~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~ 685 (1176)
T KOG1248|consen 606 PTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSP 685 (1176)
T ss_pred cHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 5677788888887665543 2222 22222 1222334444444444445544 445568888888877665543
Q ss_pred -----hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc----ccccccchHHHHHHhhcCCChhHHHHHHHHHH
Q 004132 75 -----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA----ELVEDRGFLESLKDLISDNNPMVVANAVAALA 145 (772)
Q Consensus 75 -----~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p----~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~ 145 (772)
..+-++++...+.+.+++.+.++|+.++-|+..+|+..| +++.. .++.+.=++++.|..-..+|..+|.
T Consensus 686 s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~EvIL~~Ke~n~~aR~~Af~lL~ 763 (1176)
T KOG1248|consen 686 SGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPEVILSLKEVNVKARRNAFALLV 763 (1176)
T ss_pred chhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHHHHHhcccccHHHHhhHHHHHH
Confidence 335556777777888888999999999999999999998 33221 2233333347888888999999999
Q ss_pred HHH--hhCCCCcccccHHHHHHHHHHhhcC----ChhH----HHHHHHHHhcccc-CCHHHHHHHHHHHhHhhcCCCHHH
Q 004132 146 EIE--ENSSRPIFEITSHTLSKLLTALNEC----TEWG----QVFILDALSRYKA-ADAREAENIVERVTPRLQHANCAV 214 (772)
Q Consensus 146 eI~--~~~~~~~~~l~~~~~~~Ll~~L~~~----~ew~----qv~iL~~L~~~~~-~~~~e~~~il~~v~~~L~~~n~aV 214 (772)
+|+ ...-...-+.....+...+..+..- ..-. -+.+=.++..+.. -+.+....+++.|.-+|.+.++.|
T Consensus 764 ~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI 843 (1176)
T KOG1248|consen 764 FIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREI 843 (1176)
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHH
Confidence 998 3221111011122344444444221 1111 1222233333322 245667788899999999999999
Q ss_pred HHHHHHHHHHh
Q 004132 215 VLSAVKMILQQ 225 (772)
Q Consensus 215 v~eaik~i~~~ 225 (772)
+-.||..+--+
T Consensus 844 ~kaAI~fikvl 854 (1176)
T KOG1248|consen 844 AKAAIGFIKVL 854 (1176)
T ss_pred HHHHHHHHHHH
Confidence 99999877544
No 104
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=1.5 Score=55.08 Aligned_cols=319 Identities=17% Similarity=0.194 Sum_probs=179.3
Q ss_pred HHHHhhcCCCCHHHHhHH------HHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchH
Q 004132 49 NTFVKDSQDPNPLIRALA------VRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFL 122 (772)
Q Consensus 49 Ntl~kDl~~~np~iralA------Lrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~ 122 (772)
.-+-+===||++-|+..= |-+=++-.+++....+..++...+.+..+.||-.+++|+.-+.+-.|..- +.
T Consensus 1001 PrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~----~~ 1076 (1702)
T KOG0915|consen 1001 PRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ----VK 1076 (1702)
T ss_pred HHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH----HH
Confidence 333333358888887421 11111222344555667777888899999999999999999998655321 22
Q ss_pred HHHHH-------hhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHH
Q 004132 123 ESLKD-------LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE 195 (772)
Q Consensus 123 ~~L~~-------lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e 195 (772)
+.+.+ ..+|=..+|+-+|=.+.. .+.+||-.+ |+ +.+...
T Consensus 1077 e~lpelw~~~fRvmDDIKEsVR~aa~~~~~----------------~lsKl~vr~--~d---------------~~~~~~ 1123 (1702)
T KOG0915|consen 1077 EKLPELWEAAFRVMDDIKESVREAADKAAR----------------ALSKLCVRI--CD---------------VTNGAK 1123 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHhhh--cc---------------cCCccc
Confidence 32222 223333344433322221 223333221 11 123445
Q ss_pred HHHHHHHHhHhhc-----CCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC--CchhHHHHHHHHHHHHH
Q 004132 196 AENIVERVTPRLQ-----HANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIV 268 (772)
Q Consensus 196 ~~~il~~v~~~L~-----~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls--~~~~iryvaL~~l~~i~ 268 (772)
+..++..+.|+|- |.-+.|.--++.+++.+... ....++...-++++.|++..+ .+.-+-|+++|..+. -
T Consensus 1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Ks--sg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~-e 1200 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS--SGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINI-E 1200 (1702)
T ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHh--chhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhh-H
Confidence 5666777777653 44468888999999987543 333444444466777777775 345799999998322 1
Q ss_pred hhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHHhh----h
Q 004132 269 QRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIKL----E 343 (772)
Q Consensus 269 ~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~-~d~~~~~~~v~aIg~la~k~----~ 343 (772)
+ +.+..... ..-.+-| -+++++.+..-.+.+-.++++.++.+-++. +.-.-+.-+..-|..++.++ -
T Consensus 1201 ~---ealDt~R~--s~akssp---mmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt 1272 (1702)
T KOG0915|consen 1201 T---EALDTLRA--SAAKSSP---MMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT 1272 (1702)
T ss_pred H---HHHHHHHH--hhhcCCc---HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC
Confidence 1 11111000 0001222 357888888888888888889888887753 32222222333344455554 4
Q ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh-CcccHHHHH-HHHHHhcccCChHH--HHHHHHHHHhhhccc
Q 004132 344 RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR-YPNTYESII-ATLCESLDTLDEPE--AKASMIWIIGEYAER 416 (772)
Q Consensus 344 ~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~-~p~~~~~ii-~~L~~~l~~~~~p~--a~~~~iwilGEy~~~ 416 (772)
|....++..++..++...+-+.......+..+++- .|+...+.+ ..++.++++-+.+. +.+.++- |+.|+..
T Consensus 1273 P~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~e 1348 (1702)
T KOG0915|consen 1273 PYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQE 1348 (1702)
T ss_pred cchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhHH
Confidence 56667788888888887777776666677666554 344444444 44566666543322 2233334 7777643
No 105
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.67 E-value=0.56 Score=56.00 Aligned_cols=402 Identities=15% Similarity=0.186 Sum_probs=195.8
Q ss_pred HHHhHHHHHhcCCC----hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc-cchHHHHHHhhcCCChh
Q 004132 61 LIRALAVRTMGCIR----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED-RGFLESLKDLISDNNPM 135 (772)
Q Consensus 61 ~iralALrtl~~I~----~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~-~~~~~~L~~lL~D~d~~ 135 (772)
-++-.|++.+-++- ...+.|.+.-.++.+..|+-.-|||+++-++.++....|-.+.. ..|+-.|..+++|.+..
T Consensus 592 ~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~ 671 (1529)
T KOG0413|consen 592 PVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESD 671 (1529)
T ss_pred ccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHH
Confidence 44555555554442 44566666666788888888889999999999998888876631 35888888889999888
Q ss_pred HHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCC----
Q 004132 136 VVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHAN---- 211 (772)
Q Consensus 136 Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n---- 211 (772)
|...|.-.+...... .++-.......||..+...+. ...++...+..+...+ ......++ ...+|.+
T Consensus 672 v~e~a~~~i~k~l~p----~~~~~~dlaW~LL~~i~~~~~-~s~yl~~~~h~w~~~~-k~~~t~~d---~~~~hsG~E~~ 742 (1529)
T KOG0413|consen 672 VTEHARKLIMKVLTP----LLENSSDLAWTLLDTIESVTN-HSQYLMSTLHDWVREK-KVKRTVMD---SMKQHSGSEKL 742 (1529)
T ss_pred HHHHHHHHHHHHHhh----hcccCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hcchhhhh---hhhcccCcccC
Confidence 888887766554321 000000001112222111111 1111222221111100 00001111 1223322
Q ss_pred -HHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCCchhHHHH--HHHHHHHHHhhCh-hhhhhhccee--eec
Q 004132 212 -CAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYV--ALRNINLIVQRRP-TILAHEIKVF--FCK 285 (772)
Q Consensus 212 -~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~~~~iryv--aL~~l~~i~~~~p-~~~~~~~~if--~~~ 285 (772)
++-..-. ++... .+. +. + ....+.=..+-..+.+++|. .+++|..|...-| +.+..+.+-| +|+
T Consensus 743 ~~aWm~~s-~~~~q------~~~-~d-~-S~~~~s~~~~s~~~N~~~~L~hI~~~i~~i~~~l~s~~vd~~~~a~K~~Ck 812 (1529)
T KOG0413|consen 743 DGAWMVFS-QLCVQ------FEQ-VD-F-SIETFSRVDLSRESNLVQYLIHIIENIKKIDDDLKSDLVDTLQGAFKDYCK 812 (1529)
T ss_pred cchHHHHH-HHHhc------ccc-cc-e-eeecccccccchhhhHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHc
Confidence 2211100 01111 010 00 0 00111111222234466776 3566666655433 3344455555 476
Q ss_pred cCCc---HhHHHHHHHHHHHhc------ccccHHHHHHHHHHhhhhcc-----------------HHHHHHHHHHHHHHH
Q 004132 286 YNDP---IYVKMEKLEIMIKLA------SDRNIDQVLLEFKEYATEVD-----------------VDFVRKAVRAIGRCA 339 (772)
Q Consensus 286 ~~d~---~~Ik~~kL~lL~~L~------n~~Nv~~Il~EL~~y~~~~d-----------------~~~~~~~v~aIg~la 339 (772)
.+-. ..+-....+-+-.++ .+.-++.++..--.++..+- ..+-...+-++|.|+
T Consensus 813 ~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~~~~~~~~~~~~~~~s~~~~~~l~~~y~v~~~~~~ 892 (1529)
T KOG0413|consen 813 HPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQSFEMFKDKDEWKRNSESQERLLCTAYNVAFSYSP 892 (1529)
T ss_pred CCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehhHHhhhhhhHHHhhcchhHHHHHHHHhhccccccc
Confidence 6541 113333334443332 11112222211111221111 111111122233555
Q ss_pred Hhhh-hhHHHHHHHHHHHHhhcc-----------------------------chhHHHHHHHHHHHHHhCcccHHHHHHH
Q 004132 340 IKLE-RAAERCISVLLELIKIKV-----------------------------NYVVQEAIIVIKDIFRRYPNTYESIIAT 389 (772)
Q Consensus 340 ~k~~-~~~~~~vd~Ll~ll~~~~-----------------------------~~v~~e~i~~l~~i~~~~p~~~~~ii~~ 389 (772)
+-+| ......+..|...+..+. +.+..-.|..+.++.-.+..+....++.
T Consensus 893 ql~P~ar~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g~~~~~~vra~~vvTlakmcLah~~LaKr~~P~ 972 (1529)
T KOG0413|consen 893 QLVPHARLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEGAMFSDKVRAVGVVTLAKMCLAHDRLAKRLMPM 972 (1529)
T ss_pred eeccchhccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccccccchHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5555 222333444443333221 1234445666666666666666667777
Q ss_pred HHHhcccCChHHHHHHHHHHHhhhccccC-CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhh----cCCCCChHHHHHH
Q 004132 390 LCESLDTLDEPEAKASMIWIIGEYAERID-NADELLESFLESFPEEPAQVQLQLLTATVKLFL----KKPTEGPQQMIQV 464 (772)
Q Consensus 390 L~~~l~~~~~p~a~~~~iwilGEy~~~i~-~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~----~~p~~~~~~~v~~ 464 (772)
+.+-|+..+.-..+..++-.+|.+|-... -...++-.+...+.+-++-||.+.+..+.+|.- +..+ .-.++.
T Consensus 973 lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G---~Lf~Rf 1049 (1529)
T KOG0413|consen 973 LVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNG---ELFIRF 1049 (1529)
T ss_pred HHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcch---hhHHHH
Confidence 77777766555556666666676663221 123455556667788899999999999999843 3332 335566
Q ss_pred HHHhhhcCCCChHHHhhHHHHHH
Q 004132 465 VLNNATVETDNPDLRDRAYIYWR 487 (772)
Q Consensus 465 vl~~~~~~s~~~dvrdRA~~y~~ 487 (772)
++.. -| .++|+|.-|-||..
T Consensus 1050 ~l~l--~D-~~edIr~~a~f~~~ 1069 (1529)
T KOG0413|consen 1050 MLAL--LD-ANEDIRNDAKFYIS 1069 (1529)
T ss_pred HHHH--cc-cCHHHHHHHHHHHH
Confidence 6654 24 68999999999864
No 106
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.60 E-value=0.35 Score=54.80 Aligned_cols=41 Identities=17% Similarity=0.492 Sum_probs=33.1
Q ss_pred HhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhhhhcc
Q 004132 240 KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIK 280 (772)
Q Consensus 240 ~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~~~~~ 280 (772)
..+.|-|+.-|+ .++++++.+|+++..++...|+++..|+.
T Consensus 364 ~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 364 PTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS 405 (415)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 345665565554 78899999999999999999999988865
No 107
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.59 E-value=0.26 Score=59.39 Aligned_cols=136 Identities=27% Similarity=0.329 Sum_probs=96.3
Q ss_pred hhHHHHHhhcCCCcchHHH-HHHHHHHhccCCCcHHHHHHHHHHhh---------cCC---CCHHHHhHHHHHhcCCChh
Q 004132 10 LFTDVVNCMQTENLELKKL-VYLYLINYAKSQPDLAILAVNTFVKD---------SQD---PNPLIRALAVRTMGCIRVD 76 (772)
Q Consensus 10 lf~~vi~l~~s~~~~lKrl-~YL~l~~~~~~~~dl~lL~iNtl~kD---------l~~---~np~iralALrtl~~I~~~ 76 (772)
.||.|+|++||+-.++|-+ +++-...+|-..+=.+ -|.|| |.+ -++.-|++|.-.|+.|...
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~-----dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA-----DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH-----HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence 5999999999999999975 7777776664421111 23444 222 2468899998888877421
Q ss_pred -----hhH--HHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhccccc---cccchHHHHHHhhcCCChhHHHHHHHHHH
Q 004132 77 -----KIT--EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLISDNNPMVVANAVAALA 145 (772)
Q Consensus 77 -----ei~--~~l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~~p~~~---~~~~~~~~L~~lL~D~d~~Vv~~av~aL~ 145 (772)
+-+ ..++..-...|+| +.|..|.-.++|+++++.-+++.- ....-.++|..+|.|.-|.|+++|+-||.
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 111 2223333445566 579999999999999998877641 12345789999999999999999999998
Q ss_pred HHHhh
Q 004132 146 EIEEN 150 (772)
Q Consensus 146 eI~~~ 150 (772)
.....
T Consensus 668 tfl~~ 672 (1387)
T KOG1517|consen 668 TFLSN 672 (1387)
T ss_pred HHhcc
Confidence 87654
No 108
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.46 E-value=9.6 Score=48.57 Aligned_cols=200 Identities=15% Similarity=0.159 Sum_probs=124.1
Q ss_pred HhHHHHHHHHHHHh--cccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHH---Hhhccch
Q 004132 290 IYVKMEKLEIMIKL--ASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL-ERAAERCISVLLEL---IKIKVNY 363 (772)
Q Consensus 290 ~~Ik~~kL~lL~~L--~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~-~~~~~~~vd~Ll~l---l~~~~~~ 363 (772)
.+++..--++++.| +.++-+-.|+.+|..-+..-+.++|.+++.-+|++-... ...++.|-++...+ +......
T Consensus 236 ~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~ 315 (1266)
T KOG1525|consen 236 SSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVE 315 (1266)
T ss_pred cchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChh
Confidence 44566666777766 466677778888888888888999999999998866432 11123333333333 3345566
Q ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHHHHHHHHHHhh--hccc-cCCHHHHHHHHhhhCCCCCHHHHH
Q 004132 364 VVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGE--YAER-IDNADELLESFLESFPEEPAQVQL 440 (772)
Q Consensus 364 v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGE--y~~~-i~~~~~~L~~l~~~f~~e~~~vq~ 440 (772)
|+-+++...++++..+|...+.....+.-...+. ++..+....-+++. .... ....+.+|....++..+-...||.
T Consensus 316 vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~-D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~ 394 (1266)
T KOG1525|consen 316 VRMECVESIKQCLLNNPSIAKASTILLALRERDL-DEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRK 394 (1266)
T ss_pred hhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcC-ChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHH
Confidence 8889999999999999987655443332222232 23332211111111 1111 011223888888888888999999
Q ss_pred HHHHHHHHHhhcC------------------CCC----------ChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcC
Q 004132 441 QLLTATVKLFLKK------------------PTE----------GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (772)
Q Consensus 441 ~lLta~~Kl~~~~------------------p~~----------~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~ 491 (772)
+++.-++++|-+. |++ +.+.++..+|..... ..+.+.|+|-.-.+.+|..
T Consensus 395 ~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~-P~~l~~q~Rmk~l~~~l~~ 472 (1266)
T KOG1525|consen 395 QAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLV-PYPLSTQERMKHLYQLLAG 472 (1266)
T ss_pred HHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhc
Confidence 9999999998851 100 123455666665543 3667888888777777753
No 109
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.39 E-value=2.7 Score=44.48 Aligned_cols=173 Identities=13% Similarity=0.177 Sum_probs=95.0
Q ss_pred HHhccccCCHHHHHHHHHHHhHhh--cCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC--CchhHHHH
Q 004132 184 ALSRYKAADAREAENIVERVTPRL--QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS--AEPEIQYV 259 (772)
Q Consensus 184 ~L~~~~~~~~~e~~~il~~v~~~L--~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls--~~~~iryv 259 (772)
.|.+...-..+.+..+++.+.... +.--.++++.+.+++-.++.. ..+.++.+....+..++.+.. +||.---+
T Consensus 66 ~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~ 143 (262)
T PF14500_consen 66 ALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLL 143 (262)
T ss_pred HHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHH
Confidence 333333334455666666665422 222345666666666554432 223333333334444455553 68877777
Q ss_pred HHHHHHHHHhhChh------hh---hhhcce-eeeccCCcHhHHHHHHHHHH--Hhcc-cccHHHHHHHHHHhhhhccHH
Q 004132 260 ALRNINLIVQRRPT------IL---AHEIKV-FFCKYNDPIYVKMEKLEIMI--KLAS-DRNIDQVLLEFKEYATEVDVD 326 (772)
Q Consensus 260 aL~~l~~i~~~~p~------~~---~~~~~i-f~~~~~d~~~Ik~~kL~lL~--~L~n-~~Nv~~Il~EL~~y~~~~d~~ 326 (772)
+.+.+..+.+.++- +| .-|.-| |.-..+||.-|.++-|..-+ .|+. +.=.+..+.-|++=+.+....
T Consensus 144 ~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~ 223 (262)
T PF14500_consen 144 SFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPS 223 (262)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcH
Confidence 77777777777641 11 122222 22234566556665554433 3443 322345566666666666777
Q ss_pred HHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHh
Q 004132 327 FVRKAVRAIGRCAIKLER-AAERCISVLLELIK 358 (772)
Q Consensus 327 ~~~~~v~aIg~la~k~~~-~~~~~vd~Ll~ll~ 358 (772)
.+.++.+.+..|+.+|.. ....++..+++-++
T Consensus 224 ~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 224 VKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 889999999999998864 34555666655444
No 110
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=2.1 Score=55.12 Aligned_cols=226 Identities=19% Similarity=0.215 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC----h-hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc
Q 004132 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR----V-DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE 117 (772)
Q Consensus 43 l~lL~iNtl~kDl~~~np~iralALrtl~~I~----~-~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~ 117 (772)
+--++.--+..++..+||..|+.|-.+++.+. . +-+++..-..++++-.-.+|+-|---.++++.+++..-....
T Consensus 873 v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 873 VRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 34445555678889999999999998888864 2 222333333345555557777777778888888886655554
Q ss_pred ccchHH---HHHHhhcCCCh-hHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhcccc-CC
Q 004132 118 DRGFLE---SLKDLISDNNP-MVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKA-AD 192 (772)
Q Consensus 118 ~~~~~~---~L~~lL~D~d~-~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~-~~ 192 (772)
.+.+.. .+..+-.|+++ .|...++.++.-|.....+..+.+..+++. ++..+--..|-..+.+...+.+... .+
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tls-l~~~lLls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLS-LCLKLLLSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHH-HHHHHcCCCCcchhhhhhhhccccccch
Confidence 433433 66667778766 888899999988877665444444333333 3333323334455555544444322 11
Q ss_pred HHHH-----------------HHHHH-----HHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc
Q 004132 193 AREA-----------------ENIVE-----RVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL 250 (772)
Q Consensus 193 ~~e~-----------------~~il~-----~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll 250 (772)
.+++ ...++ ...-.+.|.++-|--++++++-++. .+.... .. ...++..|..++
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlh-lFapr~-~n--~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLH-LFAPRH-VN--LDSLVLQLCSLL 1107 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH-hhcchh-cc--HHHHHHHHHHHh
Confidence 1110 00010 1112356778888888888886542 111111 00 112333445555
Q ss_pred CC-chhHHHHHHHHHHHHHhhChh
Q 004132 251 SA-EPEIQYVALRNINLIVQRRPT 273 (772)
Q Consensus 251 s~-~~~iryvaL~~l~~i~~~~p~ 273 (772)
++ .--+|-..+.++..++++--.
T Consensus 1108 ~s~~~i~r~~~~~clrql~~Re~s 1131 (2067)
T KOG1822|consen 1108 SSSYLILRRASFSCLRQLVQREAS 1131 (2067)
T ss_pred cchhhhhhhhHHhhhhHHhHHHHH
Confidence 43 333445556666666666433
No 111
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=95.13 E-value=0.19 Score=50.36 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=94.0
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCChhhhH--HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 004132 49 NTFVKDSQDPNPLIRALAVRTMGCIRVDKIT--EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (772)
Q Consensus 49 Ntl~kDl~~~np~iralALrtl~~I~~~ei~--~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~ 126 (772)
+.+.+-+.+++..+|-.|++.+..+-..-++ -..+|.+.-+..|++++||++|...+-.++.++|+++.. .+.+-++
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~-~~~~gi~ 89 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES-RYSEGIR 89 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHH
Confidence 4566677899999999999999887544444 234667888999999999999999999999999998874 4444443
Q ss_pred H-------hhcCCChhH---HHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcC----------C-hhHHHHHHHHH
Q 004132 127 D-------LISDNNPMV---VANAVAALAEIEENSSRPIFEITSHTLSKLLTALNEC----------T-EWGQVFILDAL 185 (772)
Q Consensus 127 ~-------lL~D~d~~V---v~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~----------~-ew~qv~iL~~L 185 (772)
. +-.|..... ..+.+..++++...+..... +.+..|++.+... . -+...++.+.|
T Consensus 90 ~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~----~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~nL 165 (187)
T PF12830_consen 90 LAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRR----KFLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAENL 165 (187)
T ss_pred HHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHH----HHHHHHHHHHHhhccccccccchhHHHHHHHHHHHH
Confidence 2 223333222 55566667777653322111 2244455544321 1 12345666666
Q ss_pred hccccCCHHHHHHHHHH
Q 004132 186 SRYKAADAREAENIVER 202 (772)
Q Consensus 186 ~~~~~~~~~e~~~il~~ 202 (772)
+.+.-...+|...++..
T Consensus 166 A~l~y~~~~E~l~vi~~ 182 (187)
T PF12830_consen 166 ATLPYQTQDEVLYVIHH 182 (187)
T ss_pred hcCCCCChhHHHHHHHH
Confidence 66555555555544443
No 112
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.99 E-value=8.9 Score=44.10 Aligned_cols=297 Identities=24% Similarity=0.232 Sum_probs=158.6
Q ss_pred CCCCCCccch--hHHHHHhhcCCCcc-hHHHHHHHHHHhccCCCcHHHHHHHHHHhhcC-CCCH-HHHhHHHHHhcCCC-
Q 004132 1 MTVGKDVSSL--FTDVVNCMQTENLE-LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNP-LIRALAVRTMGCIR- 74 (772)
Q Consensus 1 mt~G~Dvs~l--f~~vi~l~~s~~~~-lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~-~~np-~iralALrtl~~I~- 74 (772)
||+...++.+ ...|.+-.|...-- -|.+.-|.-+.+++.-.+-.+-++|++.--=+ ..+| -|...-.+.+....
T Consensus 1 ~~v~~~~~~~~s~~~if~k~Q~s~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~ 80 (885)
T COG5218 1 MTVSETVSSLESMQLIFNKIQQSSAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMP 80 (885)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCC
Confidence 4555555543 22333334444333 34455667777888777777888898865433 2222 22223333333221
Q ss_pred -h---hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004132 75 -V---DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (772)
Q Consensus 75 -~---~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~ 148 (772)
. .+++......+.+.+.+++--|||..+.-++.+...-.+.=+. .++++.|.+-+-|+.+.|...|+.+|+...
T Consensus 81 ~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q 160 (885)
T COG5218 81 DDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ 160 (885)
T ss_pred CChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 2 4577777778888999999999999988888887654442111 356777778888999999999999998876
Q ss_pred hhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccC-----------C--HHHHHHHHHHHhHhh--------
Q 004132 149 ENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAA-----------D--AREAENIVERVTPRL-------- 207 (772)
Q Consensus 149 ~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~-----------~--~~e~~~il~~v~~~L-------- 207 (772)
+....+ ...+..++..+...+|-.-+.=+-+|..-... | ......+.+++.|++
T Consensus 161 e~~~ne-----en~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi 235 (885)
T COG5218 161 EMELNE-----ENRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSI 235 (885)
T ss_pred hccCCh-----HHHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccc
Confidence 543221 01234455555444554444433333221110 0 111123445555543
Q ss_pred -----------cCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCC-chhHHHHHHHHHHHHHhhChhhh
Q 004132 208 -----------QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRRPTIL 275 (772)
Q Consensus 208 -----------~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~-~~~iryvaL~~l~~i~~~~p~~~ 275 (772)
....-+|.-+++..|.+- ++...+ .-|+.|++. |.--+.++..+|..+-+++|+++
T Consensus 236 ~kri~l~ewgl~dRe~sv~~a~~d~ia~~--w~~~~d----------~~lveLle~lDvSr~sv~v~aik~~F~~R~D~l 303 (885)
T COG5218 236 DKRILLMEWGLLDREFSVKGALVDAIASA--WRIPED----------LRLVELLEFLDVSRRSVLVAAIKGVFEKRPDVL 303 (885)
T ss_pred cceehhhhhcchhhhhhHHHHHHHHHHHH--hccccc----------ccHHHHHHHHhhhhHHHHHHHHHHHHhhccccc
Confidence 223446666777776541 221111 112333321 22223366677788888888876
Q ss_pred hhhccee-eeccCCcHhHHHHHHHHHHHhcccccHHHHHHHH
Q 004132 276 AHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF 316 (772)
Q Consensus 276 ~~~~~if-~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL 316 (772)
..- -| ...-.|+..=-..--...+..|=++|+.+++.++
T Consensus 304 s~~--eFPe~~w~d~T~E~tfL~rt~~lyCldnNitell~~f 343 (885)
T COG5218 304 SEK--EFPEYLWSDPTEENTFLSRTELLYCLDNNITELLGRF 343 (885)
T ss_pred hhh--hcHHHHhhCchHHHHHHHHHHHHHHHhccHHHHHhhc
Confidence 531 11 0111222110000111223356688898888874
No 113
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.67 E-value=0.084 Score=46.37 Aligned_cols=67 Identities=25% Similarity=0.251 Sum_probs=49.1
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCChh-----hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc
Q 004132 49 NTFVKDSQDPNPLIRALAVRTMGCIRVD-----KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL 115 (772)
Q Consensus 49 Ntl~kDl~~~np~iralALrtl~~I~~~-----ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~ 115 (772)
+...++++|+.+-+||-||..|..+... .-.+.+..-+...|+|+++||==.|+-|+.-+...+|+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 4556788888888888888888776321 223556666777788888888888888888888777763
No 114
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.66 E-value=2 Score=49.13 Aligned_cols=149 Identities=20% Similarity=0.219 Sum_probs=89.0
Q ss_pred hHHHHHHhhc----CCChhHHHHHHHHHHH-HHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHh---cccc-C
Q 004132 121 FLESLKDLIS----DNNPMVVANAVAALAE-IEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALS---RYKA-A 191 (772)
Q Consensus 121 ~~~~L~~lL~----D~d~~Vv~~av~aL~e-I~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~---~~~~-~ 191 (772)
|...+...|. ...|.-+..-+..+.+ ..+++|. ..++..+.++++++-+...+--.+-..+++|+ .... -
T Consensus 47 flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpe-g~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI 125 (885)
T COG5218 47 FLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPE-GEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI 125 (885)
T ss_pred HHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChh-hhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH
Confidence 3444444442 3344444555555555 2223332 25677788999998876555444444444444 3322 2
Q ss_pred CHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCCc--hhHHHHHHHHHHHHHh
Q 004132 192 DAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAE--PEIQYVALRNINLIVQ 269 (772)
Q Consensus 192 ~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~~--~~iryvaL~~l~~i~~ 269 (772)
|+.-+..+++.+..++-...++|..||++++.++-+.-.+++. ++...|..++.+| .|+|-.||-+|..=-.
T Consensus 126 De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen------~~~n~l~~~vqnDPS~EVRr~allni~vdns 199 (885)
T COG5218 126 DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN------RIVNLLKDIVQNDPSDEVRRLALLNISVDNS 199 (885)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH------HHHHHHHHHHhcCcHHHHHHHHHHHeeeCCC
Confidence 4455667788888899999999999999999987543334432 2333456667544 4899999987754333
Q ss_pred hChhhhh
Q 004132 270 RRPTILA 276 (772)
Q Consensus 270 ~~p~~~~ 276 (772)
.+|-++.
T Consensus 200 T~p~IlE 206 (885)
T COG5218 200 TYPCILE 206 (885)
T ss_pred cchhHHH
Confidence 3454443
No 115
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=16 Score=45.05 Aligned_cols=427 Identities=14% Similarity=0.159 Sum_probs=216.9
Q ss_pred CCCccchhHHHHH----hhcCCCcchHHHHHHHHHHhccC-CCcHHHHHHHHHHh---hcCCCC-HHHHhHHHHHhcC--
Q 004132 4 GKDVSSLFTDVVN----CMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVK---DSQDPN-PLIRALAVRTMGC-- 72 (772)
Q Consensus 4 G~Dvs~lf~~vi~----l~~s~~~~lKrl~YL~l~~~~~~-~~dl~lL~iNtl~k---Dl~~~n-p~iralALrtl~~-- 72 (772)
|.||+...-.|++ .+...|..++-=.-=++...... -++++.-++.+... -+++.+ -+=-++||--|+.
T Consensus 332 ~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 332 GEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred ccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 5666655555554 33444544443333333333333 26677766666554 223222 3445666666654
Q ss_pred CChhhhHHHHHHHHHhhhCC--------CChHHHHHHHHHHHHHHhhc-cccccccchHHHH-----HHhhcCCChhHHH
Q 004132 73 IRVDKITEYLCDPLQRCLKD--------DDPYVRKTAAICVAKLYDIN-AELVEDRGFLESL-----KDLISDNNPMVVA 138 (772)
Q Consensus 73 I~~~ei~~~l~~~v~~~L~d--------~~pyVRK~Aa~~l~kl~~~~-p~~~~~~~~~~~L-----~~lL~D~d~~Vv~ 138 (772)
+-.+..++.+.|.|.+.|.= ....||-.|+..+--+++-+ |+.++. +...| ...+-|++-.++.
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p--~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP--VLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH--HHHHHHHHHHHHHhcCchhhHhH
Confidence 45788889999999888853 45579999999888887754 454543 54433 4456799999999
Q ss_pred HHHHHHHHHHhhCCCC--cccccH-HHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHh-hcCCCHHH
Q 004132 139 NAVAALAEIEENSSRP--IFEITS-HTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR-LQHANCAV 214 (772)
Q Consensus 139 ~av~aL~eI~~~~~~~--~~~l~~-~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~-L~~~n~aV 214 (772)
+|.+||.|..-..+.. .+++.. ..+..+- +..+-|+++.. .++.| +.-.+.+++.+... +.|=+..+
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~---~rsNcy~~l~~--~ia~~----~~y~~~~f~~L~t~Kv~HWd~~i 560 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLISTIDYFSVT---NRSNCYLDLCV--SIAEF----SGYREPVFNHLLTKKVCHWDVKI 560 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhhcchhhhh---hhhhHHHHHhH--HHHhh----hhHHHHHHHHHHhcccccccHHH
Confidence 9999999975432211 112110 0011100 11233443322 12222 23344556655543 78888899
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHhcccchh-hccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHH
Q 004132 215 VLSAVKMILQQMELITSTDVVRNLCKKMAPPLV-TLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVK 293 (772)
Q Consensus 215 v~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~-~Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik 293 (772)
...++.++.++.. ..++... .-..++|+ ..++++.+.|....-....++.....+- + ++ .++.
T Consensus 561 relaa~aL~~Ls~--~~pk~~a---~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~-~---~~-------~~l~ 624 (1133)
T KOG1943|consen 561 RELAAYALHKLSL--TEPKYLA---DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE-P---VI-------KGLD 624 (1133)
T ss_pred HHHHHHHHHHHHH--hhHHhhc---ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh-h---hh-------hhhH
Confidence 9999988887532 1333222 12334444 3557788888877666666554321100 0 00 0000
Q ss_pred HHHHHHHHHhcccccHHHHHHHHH--HhhhhccHHHHHHHHHHHHHHHHh-h----hhhHHHHHHHHHHHHhhccchhHH
Q 004132 294 MEKLEIMIKLASDRNIDQVLLEFK--EYATEVDVDFVRKAVRAIGRCAIK-L----ERAAERCISVLLELIKIKVNYVVQ 366 (772)
Q Consensus 294 ~~kL~lL~~L~n~~Nv~~Il~EL~--~y~~~~d~~~~~~~v~aIg~la~k-~----~~~~~~~vd~Ll~ll~~~~~~v~~ 366 (772)
...+.-+. .++.++. .|-+.-..-++....+.|..+... . +...+..-..+.+.+ +..+.+.+
T Consensus 625 e~~i~~l~---------~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l-~~~n~i~~ 694 (1133)
T KOG1943|consen 625 ENRIAGLL---------SIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNL-TLPNQIRD 694 (1133)
T ss_pred HHHhhhhh---------hhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhh-cchHHHHH
Confidence 00000000 0111110 000000011111112222222211 0 011222233344444 22336777
Q ss_pred HHHHHHHHHHHhC----cccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccCC---HHHHHHHHhhhCCCC-CHHH
Q 004132 367 EAIIVIKDIFRRY----PNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEE-PAQV 438 (772)
Q Consensus 367 e~i~~l~~i~~~~----p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~---~~~~L~~l~~~f~~e-~~~v 438 (772)
+++..+.++...| +..-..++.++...+.++.+...+..++-++|--...+-. -..+...+++.++.. .++-
T Consensus 695 ~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~a 774 (1133)
T KOG1943|consen 695 AAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEA 774 (1133)
T ss_pred HHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHH
Confidence 7887887777654 2222346677777777766666677677777765432211 123445556666655 7888
Q ss_pred HHHHHHHHHHHhhcCC----CCChHHHHHHHHH
Q 004132 439 QLQLLTATVKLFLKKP----TEGPQQMIQVVLN 467 (772)
Q Consensus 439 q~~lLta~~Kl~~~~p----~~~~~~~v~~vl~ 467 (772)
|.+.+-|+.++..... .+..++....+++
T Consensus 775 R~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~ 807 (1133)
T KOG1943|consen 775 RQQNVKALAHVCKTVTSLLFSESIEKFRETLLN 807 (1133)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 8888888887754322 2224455555555
No 116
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=94.55 E-value=8.9 Score=42.06 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=68.4
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhC
Q 004132 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLK 91 (772)
Q Consensus 12 ~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~ 91 (772)
-.+++..... ...|||+--++.+|.+.-|+++--+++.-..-|.|.+-.||-.|+|-|...+..+...-+.+.+.++|+
T Consensus 28 ~~il~~~k~~-~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 28 EGILKAVKGT-SKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHhhcc-hHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 3455555443 456999999999999999999999999988888999999999999999999888888888888999998
No 117
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=8.3 Score=41.29 Aligned_cols=308 Identities=15% Similarity=0.230 Sum_probs=166.9
Q ss_pred hcCCCcchHHHHHHHHHHhccCC-----CcHHHHHHHH-HHh---hc-CCCCHHHHhHHHHHhcCCC-hhhhHHHHHH--
Q 004132 18 MQTENLELKKLVYLYLINYAKSQ-----PDLAILAVNT-FVK---DS-QDPNPLIRALAVRTMGCIR-VDKITEYLCD-- 84 (772)
Q Consensus 18 ~~s~~~~lKrl~YL~l~~~~~~~-----~dl~lL~iNt-l~k---Dl-~~~np~iralALrtl~~I~-~~ei~~~l~~-- 84 (772)
+-.+|-..|-+..=-+..+.+.. .+ .++++|. +.| |+ -..|..|--.|+.++.+|. .+.-.+.+.+
T Consensus 91 LiaddasVKiLackqigcilEdcDtnaVse-illvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSe 169 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTNAVSE-ILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESE 169 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchhhHHH-HHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccc
Confidence 34455555555444333333322 22 3344443 444 22 4567788888888888875 3444443332
Q ss_pred -----HHHhhhCCCChHHHHHHHHHHHHHHhhccccc---cccchHHHHHHhhc-CCChhHHHHHHHHHHHHHhhCCCCc
Q 004132 85 -----PLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPI 155 (772)
Q Consensus 85 -----~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~---~~~~~~~~L~~lL~-D~d~~Vv~~av~aL~eI~~~~~~~~ 155 (772)
.++++..-.+..+|-+...-+.+++.++|+.. ...|+++.|..=|. .+|..|+++++-..+++.+...+..
T Consensus 170 llDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgre 249 (524)
T KOG4413|consen 170 LLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGRE 249 (524)
T ss_pred cCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhh
Confidence 23344445677888888888899999888754 44677777766665 4899999999999999987654444
Q ss_pred ccccHHHHHHHHHHhh--cCChhHHHHHHHHHhccc-cCCH----HH--HHH---HHHHHhHhhcCCCHHHHHHHHHHHH
Q 004132 156 FEITSHTLSKLLTALN--ECTEWGQVFILDALSRYK-AADA----RE--AEN---IVERVTPRLQHANCAVVLSAVKMIL 223 (772)
Q Consensus 156 ~~l~~~~~~~Ll~~L~--~~~ew~qv~iL~~L~~~~-~~~~----~e--~~~---il~~v~~~L~~~n~aVv~eaik~i~ 223 (772)
|-.....+..+++.+. +.+||..-..|-...+|- .... ++ .+. .++.........++.-.=.||-++.
T Consensus 250 flaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalG 329 (524)
T KOG4413|consen 250 FLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALG 329 (524)
T ss_pred hcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHH
Confidence 5444556777888775 578988775444444332 2111 11 111 1223334445566665566666666
Q ss_pred HhhhhcCChHHHHHHHHhcccch-hhcc----C-CchhHHHHHHHHHHHHHhh---Chh--------------hhh---h
Q 004132 224 QQMELITSTDVVRNLCKKMAPPL-VTLL----S-AEPEIQYVALRNINLIVQR---RPT--------------ILA---H 277 (772)
Q Consensus 224 ~~~~~i~~~~~~~~l~~~~~~~L-~~Ll----s-~~~~iryvaL~~l~~i~~~---~p~--------------~~~---~ 277 (772)
.+... .+.. ++..+..+|- ..++ . +-..-+-.+++++..|... .|+ +|. +
T Consensus 330 ilGSn---teGa-dlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaq 405 (524)
T KOG4413|consen 330 ILGSN---TEGA-DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQ 405 (524)
T ss_pred hccCC---cchh-HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhh
Confidence 54322 2221 2223344432 2222 1 1222344555555555421 121 111 0
Q ss_pred h-----cceee-eccCCcHhHHHHHHHHHHHhcccccHH-HHH--HHHHHhhhhccHHHHHH
Q 004132 278 E-----IKVFF-CKYNDPIYVKMEKLEIMIKLASDRNID-QVL--LEFKEYATEVDVDFVRK 330 (772)
Q Consensus 278 ~-----~~if~-~~~~d~~~Ik~~kL~lL~~L~n~~Nv~-~Il--~EL~~y~~~~d~~~~~~ 330 (772)
. ...|. ++..+-+.|+..++..+.++++.-=.. .|+ .|+.+|+++...+-.+.
T Consensus 406 stkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKa 467 (524)
T KOG4413|consen 406 STKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKA 467 (524)
T ss_pred ccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHH
Confidence 0 01222 223334678888999988888754322 222 24556776666554433
No 118
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.44 E-value=0.26 Score=43.28 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=63.8
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhcc-ccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHH
Q 004132 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (772)
Q Consensus 84 ~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p-~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~ 162 (772)
..+..-+.|+.+.||--|..-+.++.+... .....+..+..+...|.|.|+.|=.||+.+|..++...+. ..
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-------~v 78 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-------EV 78 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-------HH
Confidence 345667789999999999999999998766 3333345677888899999999999999999999877653 24
Q ss_pred HHHHHHHhhc
Q 004132 163 LSKLLTALNE 172 (772)
Q Consensus 163 ~~~Ll~~L~~ 172 (772)
+..|+....+
T Consensus 79 l~~L~~~y~~ 88 (92)
T PF10363_consen 79 LPILLDEYAD 88 (92)
T ss_pred HHHHHHHHhC
Confidence 6666665433
No 119
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.37 E-value=4.5 Score=42.16 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=27.7
Q ss_pred CCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHH
Q 004132 287 NDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (772)
Q Consensus 287 ~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~ 328 (772)
.+-++||.++.+.|..+++++-++ -|.+|+.+.+.-++
T Consensus 231 ~E~pMVRhEaAeALGaIa~e~~~~----vL~e~~~D~~~vv~ 268 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIADEDCVE----VLKEYLGDEERVVR 268 (289)
T ss_pred hcchHHHHHHHHHHHhhcCHHHHH----HHHHHcCCcHHHHH
Confidence 345789999999999999987644 44578877554443
No 120
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.36 E-value=0.22 Score=58.98 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=72.9
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHh
Q 004132 49 NTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL 128 (772)
Q Consensus 49 Ntl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~l 128 (772)
+.+.+..+..+...+-++|++||+++.+..+..+.+.+. .-...++++|..|+.|+.++...+|+.+. +.+...
T Consensus 449 ~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~-----~~l~~i 522 (574)
T smart00638 449 ELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQ-----EVLLPI 522 (574)
T ss_pred HHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHH-----HHHHHH
Confidence 334444456777889999999999999999999777765 33457889999999999999888888754 555555
Q ss_pred hc--CCChhHHHHHHHHHHHH
Q 004132 129 IS--DNNPMVVANAVAALAEI 147 (772)
Q Consensus 129 L~--D~d~~Vv~~av~aL~eI 147 (772)
.. +.++.|+.+|+.+|.+-
T Consensus 523 ~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 523 YLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HcCCCCChHHHHHHHHHHHhc
Confidence 54 46788999998888764
No 121
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.29 E-value=15 Score=43.43 Aligned_cols=116 Identities=23% Similarity=0.207 Sum_probs=71.6
Q ss_pred HhccCCCcHHHHHHHHHHhhcC-CCCH-HHHhHHHHHhcCCC----hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHH
Q 004132 35 NYAKSQPDLAILAVNTFVKDSQ-DPNP-LIRALAVRTMGCIR----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKL 108 (772)
Q Consensus 35 ~~~~~~~dl~lL~iNtl~kDl~-~~np-~iralALrtl~~I~----~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl 108 (772)
.+.+.-++-.+-++|-+.--.+ .+++ -|...+.+.+.++. ..+++.++...+.|....++--||+..+.-+.++
T Consensus 33 ~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l 112 (892)
T KOG2025|consen 33 LTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALL 112 (892)
T ss_pred hhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHH
Confidence 3444444545555553322221 2222 44555666666654 3457777777888888888889999988888888
Q ss_pred Hhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 004132 109 YDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 109 ~~~~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~ 150 (772)
..-..+.=++ .++.+.+..-|.|+.|.|+..|+.+|+.....
T Consensus 113 ~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d 156 (892)
T KOG2025|consen 113 SDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD 156 (892)
T ss_pred hccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC
Confidence 7532222111 13445555566799999999999998887643
No 122
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.20 E-value=0.24 Score=51.27 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=61.7
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC--CChHHHHHHHHHHHHHHhhccccccccchHHH
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRKTAAICVAKLYDINAELVEDRGFLES 124 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d--~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~ 124 (772)
+||.|-.-+.+...++|--+--++|.+.++.-++. +.+.|.| .+|+||--||.|++.+. +++ -++.
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~----L~k~L~d~~E~pMVRhEaAeALGaIa--~e~------~~~v 255 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAAIPS----LIKVLLDETEHPMVRHEAAEALGAIA--DED------CVEV 255 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhhhHH----HHHHHHhhhcchHHHHHHHHHHHhhc--CHH------HHHH
Confidence 45777777777778888888888888887777766 4444444 67888888888887765 222 4567
Q ss_pred HHHhhcCCChhHHHHHHHHHH
Q 004132 125 LKDLISDNNPMVVANAVAALA 145 (772)
Q Consensus 125 L~~lL~D~d~~Vv~~av~aL~ 145 (772)
|++.+.|..+.|.-++..+|.
T Consensus 256 L~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHH
Confidence 777888887777777766663
No 123
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.96 E-value=2 Score=46.37 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=55.5
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCC
Q 004132 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (772)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~ 152 (772)
-.-|..++.+.++.||+.|..|++-+.-.+.+...+ ++..+...+...++.|...|+.++.++.-..+
T Consensus 29 ~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~--~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 29 DSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE--HLPLFLQALQKDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 344668889999999999999999998888888775 67777777766688999999999998876544
No 124
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=23 Score=44.23 Aligned_cols=206 Identities=15% Similarity=0.220 Sum_probs=120.7
Q ss_pred ChhHHHHHHHHHhccccCCHHH-HHHHHHHHhH-hhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-
Q 004132 174 TEWGQVFILDALSRYKAADARE-AENIVERVTP-RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL- 250 (772)
Q Consensus 174 ~ew~qv~iL~~L~~~~~~~~~e-~~~il~~v~~-~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll- 250 (772)
..+.+..+|+++....+-.++. ...+. .+.+ ..+++++.|..-+-+++-.++...+-.....+...-+-..|..-.
T Consensus 629 ~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~q 707 (1176)
T KOG1248|consen 629 ASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQ 707 (1176)
T ss_pred hhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh
Confidence 4566777777776555432222 23333 3333 455668888888888877665431112222222222222222222
Q ss_pred CCchhHHHHHHHHHHHHHhhCh----hhhhhhc-ceeeeccCCcHhHHHHHHHHHHHhcc---------cccHHHHHHHH
Q 004132 251 SAEPEIQYVALRNINLIVQRRP----TILAHEI-KVFFCKYNDPIYVKMEKLEIMIKLAS---------DRNIDQVLLEF 316 (772)
Q Consensus 251 s~~~~iryvaL~~l~~i~~~~p----~~~~~~~-~if~~~~~d~~~Ik~~kL~lL~~L~n---------~~Nv~~Il~EL 316 (772)
+...-.|+-.|.++..|.+..+ +++...+ .++.+..+.+.+-|+-|.++|+.|+. +. ...+++|+
T Consensus 708 s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnef 786 (1176)
T KOG1248|consen 708 SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEF 786 (1176)
T ss_pred ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHH
Confidence 3456789999999999998887 2222222 34455566778899999999999982 22 24455554
Q ss_pred HHhhhh--c-cHHHHHHH-HHHHHHHHHhhh-----hhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcc
Q 004132 317 KEYATE--V-DVDFVRKA-VRAIGRCAIKLE-----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN 381 (772)
Q Consensus 317 ~~y~~~--~-d~~~~~~~-v~aIg~la~k~~-----~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~ 381 (772)
+.-+.. + |....... |-+++.+...+. ...+.+++.+..+|..+...+...+|-.++-++...|+
T Consensus 787 l~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 787 LSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 432221 1 22222222 666666665543 34456677777777777778888888888888777775
No 125
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.50 E-value=0.17 Score=44.92 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCC
Q 004132 97 VRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECT 174 (772)
Q Consensus 97 VRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ 174 (772)
-||-+.+|+..+.---++.+.. ..+++.+..++.|+|+-|+..|+-+|+.|.+...+..+....+.+..|++.+.|.+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3788888888875444443332 23667778889999999999999999999876443333333334444444444443
No 126
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.08 E-value=0.82 Score=44.82 Aligned_cols=124 Identities=18% Similarity=0.289 Sum_probs=78.5
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHH
Q 004132 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI 199 (772)
Q Consensus 120 ~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~i 199 (772)
.|..++..+|+++++.-+-.++.++..+++..+. ..++ ..+..|.+. ++.+|..
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~----------e~l~---~~~~~W~~~-Ll~~L~~------------ 78 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW----------EILL---SHGSQWLRA-LLSILEK------------ 78 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH----------HHHH---HHHHHHHHH-HHHHHcC------------
Confidence 4888999999999998888888888887766431 1111 145667765 5555544
Q ss_pred HHHHhHhhcCCCHHHHHHHHHHHHHhhhhcC-ChHHHHHHHH----hcccchhhccCCchhHHHHHHHHHHHHHhhChhh
Q 004132 200 VERVTPRLQHANCAVVLSAVKMILQQMELIT-STDVVRNLCK----KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTI 274 (772)
Q Consensus 200 l~~v~~~L~~~n~aVv~eaik~i~~~~~~i~-~~~~~~~l~~----~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~p~~ 274 (772)
..++.++-.|+.++..++..+. .++..|++.. +++.+++.++++ +...-.+|+.+..+++.+|..
T Consensus 79 ---------~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 79 ---------PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD-SSCPETALDALATLLPHHPTT 148 (165)
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHCCcc
Confidence 2233455555666555544443 3444555432 233333344433 567778999999999999999
Q ss_pred hhhhc
Q 004132 275 LAHEI 279 (772)
Q Consensus 275 ~~~~~ 279 (772)
|.++.
T Consensus 149 ~rp~~ 153 (165)
T PF08167_consen 149 FRPFA 153 (165)
T ss_pred ccchH
Confidence 88764
No 127
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=92.95 E-value=12 Score=41.79 Aligned_cols=205 Identities=15% Similarity=0.206 Sum_probs=120.6
Q ss_pred hccCCchhHHHHHHHHHHHHHhhChh---hhhhhccee--eeccCC--cHhHHHHHHHHHHHhcccc-cH----HHHHHH
Q 004132 248 TLLSAEPEIQYVALRNINLIVQRRPT---ILAHEIKVF--FCKYND--PIYVKMEKLEIMIKLASDR-NI----DQVLLE 315 (772)
Q Consensus 248 ~Lls~~~~iryvaL~~l~~i~~~~p~---~~~~~~~if--~~~~~d--~~~Ik~~kL~lL~~L~n~~-Nv----~~Il~E 315 (772)
.+++++.++|-.++|.+..++..... +.+-++.+| .|+..| ...=|..||.+.-++.+-. .. ..|++-
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra 112 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA 112 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 46677799999999999887765432 233345444 233332 2345778888887776542 22 567777
Q ss_pred HHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHH-----HH
Q 004132 316 FKEYATEVDVDFVRKAVRAIGRCAIKLERAAERC--ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESI-----IA 388 (772)
Q Consensus 316 L~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~--vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~i-----i~ 388 (772)
+..-+...++.+++-++..++.++..-|.-.-+| +.+|++.+..+.-.+.+-++.++-.++. .|+.+.++ ++
T Consensus 113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~ 191 (371)
T PF14664_consen 113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLE 191 (371)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHH
Confidence 8788888888899999999999998877655554 6677776665322233334445555543 35444332 22
Q ss_pred HHHHhcccC------ChH------HHHHHHHHHHhhhccccC---CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcC
Q 004132 389 TLCESLDTL------DEP------EAKASMIWIIGEYAERID---NADELLESFLESFPEEPAQVQLQLLTATVKLFLKK 453 (772)
Q Consensus 389 ~L~~~l~~~------~~p------~a~~~~iwilGEy~~~i~---~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~ 453 (772)
.+...+-+. ++. .++.+++-++--+.-.+- +...-++.+++.+....+++|-.+|..+..++--.
T Consensus 192 ~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 192 SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 222222111 111 122344455544443331 11255677777766667777777777777776543
No 128
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=1.4 Score=51.29 Aligned_cols=175 Identities=25% Similarity=0.254 Sum_probs=113.2
Q ss_pred HHHHHHHHHhhcCCCCHHHHhHHHHHhcC---CChhhh--------HHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc
Q 004132 44 AILAVNTFVKDSQDPNPLIRALAVRTMGC---IRVDKI--------TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN 112 (772)
Q Consensus 44 ~lL~iNtl~kDl~~~np~iralALrtl~~---I~~~ei--------~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~ 112 (772)
-.|.-..+-+-|+-+|..||..|+..+-. |+.|+. .+.-...+.++|.|+-|-||.+|+.++.|++...
T Consensus 172 ~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 172 YRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 34455566788999999999999887765 344443 3444566889999999999999999999998776
Q ss_pred cccccccchHHHHHH----hhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHh----hcCChhHHHHHHHH
Q 004132 113 AELVEDRGFLESLKD----LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL----NECTEWGQVFILDA 184 (772)
Q Consensus 113 p~~~~~~~~~~~L~~----lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L----~~~~ew~qv~iL~~ 184 (772)
=++++..-+.+.+.. +-.|+...|+.+.+..|.+|..+. ..++.+..+|.++ .|.++-.++...++
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np------~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ 325 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP------LSHPLLEQLLPALRYSLHDNSEKVRVAFVDM 325 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc------cchhHHHHHHHhcchhhhccchhHHHHHHHH
Confidence 566554333333333 335777888888888888887542 2344555555554 46778888877777
Q ss_pred HhccccCCHHHHHHH--HHHHhHhhcCCCHHHHHHHHHHHHH
Q 004132 185 LSRYKAADAREAENI--VERVTPRLQHANCAVVLSAVKMILQ 224 (772)
Q Consensus 185 L~~~~~~~~~e~~~i--l~~v~~~L~~~n~aVv~eaik~i~~ 224 (772)
|.+....-.-...+| ++.++.+|..-+.-|-..-++.|++
T Consensus 326 ll~ik~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~ 367 (1005)
T KOG1949|consen 326 LLKIKAVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFN 367 (1005)
T ss_pred HHHHHhhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHH
Confidence 776532111111122 2344455555555555555555554
No 129
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=28 Score=41.46 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=71.4
Q ss_pred CCHHHHhHHHHHhcCCCh--------h-hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHh
Q 004132 58 PNPLIRALAVRTMGCIRV--------D-KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL 128 (772)
Q Consensus 58 ~np~iralALrtl~~I~~--------~-ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~l 128 (772)
.|+.-.--|||.+++|.+ . .|-..+.+.|...++++.-|.|..|+..+.++-.--++...-.+..+....+
T Consensus 428 dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~nc 507 (970)
T COG5656 428 DNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNC 507 (970)
T ss_pred ccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 346666679999999876 2 2333466778888899999999999999999843334332222345666778
Q ss_pred hcCCChhHHHHHHHHHHHHHhhCC-CCcc-cccHHHHHHHHHH
Q 004132 129 ISDNNPMVVANAVAALAEIEENSS-RPIF-EITSHTLSKLLTA 169 (772)
Q Consensus 129 L~D~d~~Vv~~av~aL~eI~~~~~-~~~~-~l~~~~~~~Ll~~ 169 (772)
|.+.+--|+..|..|+.-...++. ...+ ...+++..+||..
T Consensus 508 l~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsL 550 (970)
T COG5656 508 LKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSL 550 (970)
T ss_pred HhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHh
Confidence 888777787777667655443321 1111 2234455566554
No 130
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.55 E-value=1.2 Score=51.83 Aligned_cols=136 Identities=17% Similarity=0.192 Sum_probs=89.3
Q ss_pred ccchhHHHHHhhcCCCcchHHHHHHHHHHhccCC----CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChh---hhH
Q 004132 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ----PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD---KIT 79 (772)
Q Consensus 7 vs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~----~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~---ei~ 79 (772)
|..+|-++++-..+++...|.=+..-+..+.+++ .++.=...-.+.+-+.|..|.||--|+-+||.+... +=+
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~ 162 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC 162 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc
Confidence 3456888999999999888877777676666643 334444444566677899999999999999998732 222
Q ss_pred HHHHHHHHhhh-CCCChHHHHHHHHHHH------------------------------HHHhhccccccccchHHHHHHh
Q 004132 80 EYLCDPLQRCL-KDDDPYVRKTAAICVA------------------------------KLYDINAELVEDRGFLESLKDL 128 (772)
Q Consensus 80 ~~l~~~v~~~L-~d~~pyVRK~Aa~~l~------------------------------kl~~~~p~~~~~~~~~~~L~~l 128 (772)
+.+ ..++.++ .|+++-||+.|..++. |+ ++....++ .++-.++.-
T Consensus 163 ~v~-n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~lsi~--krv~Llewg 238 (892)
T KOG2025|consen 163 PVV-NLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKI-DLRSLSID--KRVLLLEWG 238 (892)
T ss_pred cHH-HHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhhhHH--HHHHHHHHh
Confidence 221 1122222 5899999999987753 11 11111111 245566677
Q ss_pred hcCCChhHHHHHHHHHHH
Q 004132 129 ISDNNPMVVANAVAALAE 146 (772)
Q Consensus 129 L~D~d~~Vv~~av~aL~e 146 (772)
|+|++-.|..++.-++..
T Consensus 239 LnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 239 LNDREFSVKGALVDAILS 256 (892)
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 889998888888777654
No 131
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.50 E-value=4 Score=48.27 Aligned_cols=192 Identities=18% Similarity=0.255 Sum_probs=120.8
Q ss_pred HhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc----cchhH
Q 004132 290 IYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK----VNYVV 365 (772)
Q Consensus 290 ~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~----~~~v~ 365 (772)
...|..=+|+|...++...+..|.+.+.. .+.... ++...+..+......-...+++.+.++++.. ..++.
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~--~~~~~~---ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~ 414 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKN--KKITPL---EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLR 414 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc--CCCCHH---HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHH
Confidence 34677778999999998888888876654 122222 2333333333322222356888899988753 34677
Q ss_pred HHHHHHHHHHHHhC----cccH----HHHHHHHHHhcccC---ChHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCC
Q 004132 366 QEAIIVIKDIFRRY----PNTY----ESIIATLCESLDTL---DEPEAKASMIWIIGEYAERIDNADELLESFLESFPEE 434 (772)
Q Consensus 366 ~e~i~~l~~i~~~~----p~~~----~~ii~~L~~~l~~~---~~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e 434 (772)
..++..+..+++++ +..+ +..+..+.+.|+.. .+.+-+..++-.||.-|. +.....+..++..=...
T Consensus 415 ~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--~~~i~~l~~~l~~~~~~ 492 (574)
T smart00638 415 ESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH--PSSIKVLEPYLEGAEPL 492 (574)
T ss_pred HHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC--hhHHHHHHHhcCCCCCC
Confidence 77787777777652 2211 33344444333221 223335667888998884 34566677777633345
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHH
Q 004132 435 PAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 494 (772)
Q Consensus 435 ~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~~~~ 494 (772)
+..+|.+++.|+-++..+.|.+ .++.+..++. ....++|||--| |..|+..+|.
T Consensus 493 ~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~---n~~e~~EvRiaA--~~~lm~t~P~ 546 (574)
T smart00638 493 STFIRLAAILALRNLAKRDPRK-VQEVLLPIYL---NRAEPPEVRMAA--VLVLMETKPS 546 (574)
T ss_pred CHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHc---CCCCChHHHHHH--HHHHHhcCCC
Confidence 7889999999999998888875 7776666664 346789998777 4555776553
No 132
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=91.94 E-value=19 Score=39.00 Aligned_cols=188 Identities=19% Similarity=0.230 Sum_probs=103.5
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhc--cccccc--cchHHHHHHhhcCCC--hhHHHHHHHHHHHHHhhCCCCccc
Q 004132 84 DPLQRCLKDDDPYVRKTAAICVAKLYDIN--AELVED--RGFLESLKDLISDNN--PMVVANAVAALAEIEENSSRPIFE 157 (772)
Q Consensus 84 ~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~--p~~~~~--~~~~~~L~~lL~D~d--~~Vv~~av~aL~eI~~~~~~~~~~ 157 (772)
......+.+++.-.|..|..++.+++... ++.+.+ ..+.+.+.+.++-.. ....+.-+.+|.-|.-..+...-+
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 34456667888999999999999988653 344432 234455566665333 333333333333332111111122
Q ss_pred ccHHHHHHHHHHhhcCCh--hHHHHHHHHH---hccccCCHHHHH---HHHHHHhH--hhcC----------CCHHHHHH
Q 004132 158 ITSHTLSKLLTALNECTE--WGQVFILDAL---SRYKAADAREAE---NIVERVTP--RLQH----------ANCAVVLS 217 (772)
Q Consensus 158 l~~~~~~~Ll~~L~~~~e--w~qv~iL~~L---~~~~~~~~~e~~---~il~~v~~--~L~~----------~n~aVv~e 217 (772)
+.......|.+.+.+.+. -.+..++.+| .-++..+.++.. +.++.+.. ..+. .+++|+-.
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~a 205 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAA 205 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHH
Confidence 222233334444445432 2333444444 445556666666 44443222 1221 13578888
Q ss_pred HHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhCh
Q 004132 218 AVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP 272 (772)
Q Consensus 218 aik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p 272 (772)
|+....-++..+ +...+........+.|..+| +++.++|..|=++|..|.....
T Consensus 206 AL~aW~lLlt~~-~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 206 ALSAWALLLTTL-PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 887765554333 23234455566778888888 5789999999999998876543
No 133
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.37 E-value=8.1 Score=45.93 Aligned_cols=144 Identities=18% Similarity=0.302 Sum_probs=94.4
Q ss_pred HHHhcccchhhccC---CchhHHHHHHHHHHHHHhhC--hhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHH
Q 004132 238 LCKKMAPPLVTLLS---AEPEIQYVALRNINLIVQRR--PTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQV 312 (772)
Q Consensus 238 l~~~~~~~L~~Lls---~~~~iryvaL~~l~~i~~~~--p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~I 312 (772)
++..-.++|+.-|. .|+++--++|.++..+..+. |.+.... ...|+ +-..--|.+ +-+++||.-+
T Consensus 58 Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds------~qsdd--~g~~iae~f--ik~qd~I~ll 127 (970)
T KOG0946|consen 58 VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDS------TQSDD--LGLWIAEQF--IKNQDNITLL 127 (970)
T ss_pred HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccc------hhhhH--HHHHHHHHH--HcCchhHHHH
Confidence 33334556666563 48999999999999887664 3221110 01111 111222222 2367777666
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHH-------HHHHHHHHHhhccchhHHHHHHHHHHHHHhCccc---
Q 004132 313 LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAER-------CISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT--- 382 (772)
Q Consensus 313 l~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~-------~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~--- 382 (772)
+ .|+..-|..+|+-+|.-|..+-..-+..... -|..|+++|.+..+-|+.|++-.+..+.+.++..
T Consensus 128 l----~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKl 203 (970)
T KOG0946|consen 128 L----QSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKL 203 (970)
T ss_pred H----HHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHH
Confidence 6 7777888889998888776654433333333 3788999999999999999999999999988875
Q ss_pred --HHHHHHHHHHhcc
Q 004132 383 --YESIIATLCESLD 395 (772)
Q Consensus 383 --~~~ii~~L~~~l~ 395 (772)
++.+..+|+..++
T Consensus 204 VAFENaFerLfsIIe 218 (970)
T KOG0946|consen 204 VAFENAFERLFSIIE 218 (970)
T ss_pred HHHHHHHHHHHHHHH
Confidence 4566677776664
No 134
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=91.32 E-value=0.36 Score=49.06 Aligned_cols=131 Identities=20% Similarity=0.183 Sum_probs=89.2
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCC-CCH-HHHhHHHHHhcCCChhhhHHHHHHHHHhhh
Q 004132 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQD-PNP-LIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (772)
Q Consensus 13 ~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~-~np-~iralALrtl~~I~~~ei~~~l~~~v~~~L 90 (772)
.+-.+.++...+.|-++++++....+...+- .+..+.+-+.+ .|- .+=.+|-+.++.+.... +.+.+.+.+.+
T Consensus 55 l~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~ 129 (213)
T PF08713_consen 55 LADELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKWA 129 (213)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHH
Confidence 3445788888888888888876655443322 23444554443 233 44556666666653322 44556688999
Q ss_pred CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCC
Q 004132 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (772)
Q Consensus 91 ~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~ 152 (772)
.|.++++|+.|+.++.+.++. +..+ .+.+.+..++.|.+..|.-+.--+|.++...++
T Consensus 130 ~s~~~w~rR~~~v~~~~~~~~--~~~~--~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 130 KSDNEWVRRAAIVMLLRYIRK--EDFD--ELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HCSSHHHHHHHHHCTTTHGGG--CHHH--HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred hCCcHHHHHHHHHHHHHHHHh--cCHH--HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 999999999999999887766 2222 366777888899999999999899999987654
No 135
>PF05536 Neurochondrin: Neurochondrin
Probab=91.15 E-value=37 Score=39.92 Aligned_cols=178 Identities=13% Similarity=0.138 Sum_probs=98.9
Q ss_pred CChHHHHHHHHHHHHHHhhccccccccchH---HHHHHhhcCCCh-hHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHH
Q 004132 93 DDPYVRKTAAICVAKLYDINAELVEDRGFL---ESLKDLISDNNP-MVVANAVAALAEIEENSSRPIFEITSHTLSKLLT 168 (772)
Q Consensus 93 ~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~---~~L~~lL~D~d~-~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~ 168 (772)
.++..-+.-++++...|-.+|++..+.+++ +.|.+.+...+. .++.-|+..|.-|..+..+..--+....+..|+.
T Consensus 68 ~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 68 CPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE 147 (543)
T ss_pred CCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence 366777888888888887788877665565 445555555444 7888888888888744322211112234555666
Q ss_pred HhhcCChhHHHHHHHHH----hcccc----CCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCC----hHHHH
Q 004132 169 ALNECTEWGQVFILDAL----SRYKA----ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITS----TDVVR 236 (772)
Q Consensus 169 ~L~~~~ew~qv~iL~~L----~~~~~----~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~----~~~~~ 236 (772)
.+.. .+..+-..+.++ ..... ........++..+....+.....-.++....+..+++..+. .....
T Consensus 148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~ 226 (543)
T PF05536_consen 148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP 226 (543)
T ss_pred HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence 5544 333333333333 32221 12233345555555555555555566666666666543210 00112
Q ss_pred HHHHhcccchhhccC-C-chhHHHHHHHHHHHHHhhC
Q 004132 237 NLCKKMAPPLVTLLS-A-EPEIQYVALRNINLIVQRR 271 (772)
Q Consensus 237 ~l~~~~~~~L~~Lls-~-~~~iryvaL~~l~~i~~~~ 271 (772)
.....+..-+..++. + .+.-|-.+|.....+++..
T Consensus 227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 233344444556663 3 5778888888888887764
No 136
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.87 E-value=0.44 Score=32.61 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=25.1
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 004132 121 FLESLKDLISDNNPMVVANAVAALAEIEE 149 (772)
Q Consensus 121 ~~~~L~~lL~D~d~~Vv~~av~aL~eI~~ 149 (772)
+++.+.++++|+++.|+.+|+.+|.+|.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 36788999999999999999999999875
No 137
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.69 E-value=2.4 Score=49.47 Aligned_cols=199 Identities=20% Similarity=0.252 Sum_probs=123.4
Q ss_pred CcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcC------CCCHHHHhHHHHHhcCC--------ChhhhHHHHH-HHH
Q 004132 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ------DPNPLIRALAVRTMGCI--------RVDKITEYLC-DPL 86 (772)
Q Consensus 22 ~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~------~~np~iralALrtl~~I--------~~~ei~~~l~-~~v 86 (772)
+-..-+.|-+|..-.-+.+-|+.--+-|-+..|+- ++.|.- +--=+.+|.. ++++|.-.+. |-+
T Consensus 101 ks~~~~~geI~frAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~-sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l 179 (1005)
T KOG1949|consen 101 KSLMVYIGEIYFRAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVH-SKVREVLSYFHHQKKVRQGVEEMLYRLYKPIL 179 (1005)
T ss_pred HHHHHHHhHHHHHHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHH
Confidence 34455666666665555555554434444444431 222221 1112233332 4566665554 456
Q ss_pred HhhhCCCChHHHHHHHHHHHHHHhh-ccccc--ccc----chHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCccccc
Q 004132 87 QRCLKDDDPYVRKTAAICVAKLYDI-NAELV--EDR----GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEIT 159 (772)
Q Consensus 87 ~~~L~d~~pyVRK~Aa~~l~kl~~~-~p~~~--~~~----~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~ 159 (772)
-+.|+-.|..||..|+.-...+|.+ +|+.- +.. +=...+.+||+|.-|+|++.|+-.++.+.. ..|.+.
T Consensus 180 ~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s----~fWe~i 255 (1005)
T KOG1949|consen 180 WRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITS----KFWEMI 255 (1005)
T ss_pred HHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH----HHHHHc
Confidence 7999999999999999999999864 66651 111 123578899999999999999888877653 246655
Q ss_pred HH-HHHHHHHHhhc-----CChhHHHHHHHHHhc--cccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHh
Q 004132 160 SH-TLSKLLTALNE-----CTEWGQVFILDALSR--YKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (772)
Q Consensus 160 ~~-~~~~Ll~~L~~-----~~ew~qv~iL~~L~~--~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (772)
++ ++.++++.+-+ ..--.++...+.|.. ..|......+.++.++.+.|..+...|..+++..++.+
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 44 45566666532 122344445555443 23555555666777777778888889999998888764
No 138
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.64 E-value=4.6 Score=47.50 Aligned_cols=131 Identities=21% Similarity=0.228 Sum_probs=77.7
Q ss_pred ccchhHHHHHhhcC-CCcchHHHHHH--HHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHh--cCC--ChhhhH
Q 004132 7 VSSLFTDVVNCMQT-ENLELKKLVYL--YLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTM--GCI--RVDKIT 79 (772)
Q Consensus 7 vs~lf~~vi~l~~s-~~~~lKrl~YL--~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl--~~I--~~~ei~ 79 (772)
-...+-++....+- +.-.++|=.-+ +|..|..+. .+- +-+.+-+.|.||..|..-.-++ +.. +....+
T Consensus 482 ~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe--~Ad---~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkai 556 (929)
T KOG2062|consen 482 NQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE--DAD---PLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAI 556 (929)
T ss_pred cHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh--hhH---HHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhH
Confidence 34455555554443 33345555444 555555543 333 3334444566888885443332 222 233444
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhc-CCChhHHHHHHHHHHHHHhhC
Q 004132 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENS 151 (772)
Q Consensus 80 ~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~-D~d~~Vv~~av~aL~eI~~~~ 151 (772)
+.| +.=..+|.|.-|||+|+++++=+.-.+|+.+. ....+|. .-||-|+..|..+|..-|...
T Consensus 557 r~l---Lh~aVsD~nDDVrRaAVialGFVl~~dp~~~~------s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 557 RRL---LHVAVSDVNDDVRRAAVIALGFVLFRDPEQLP------STVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred HHh---hcccccccchHHHHHHHHHheeeEecChhhch------HHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 433 33346788999999999999888878888654 3444554 568899998888887777644
No 139
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=90.60 E-value=11 Score=42.23 Aligned_cols=181 Identities=18% Similarity=0.237 Sum_probs=105.9
Q ss_pred CCChHHHHHHHHHHHHHHhhccccccccchH---HHHHHhhcC-CChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHH
Q 004132 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFL---ESLKDLISD-NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLL 167 (772)
Q Consensus 92 d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~---~~L~~lL~D-~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll 167 (772)
+...-=||-|..-+.++.......+=++.|- ..+.+.|.| +++....-|+..|.+|+.+.+..+++-..-.+.|.|
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 3455556777766888876554333222232 334455678 889999999999999999887666665555667777
Q ss_pred HHhhcCChh-H---HHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcc
Q 004132 168 TALNECTEW-G---QVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMA 243 (772)
Q Consensus 168 ~~L~~~~ew-~---qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~ 243 (772)
.+-++..+- . ---+++.|+.+-|. .-+..+.+++...+.-....++|..-++.+.++. +.+..++..++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~-EeL~~ll~dia 450 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPL------QCIVNISPLILTADEPRAVAVIKMLTKLFERLSA-EELLNLLPDIA 450 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCch------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCH-HHHHHhhhhhh
Confidence 665554321 1 11334555555442 1123334455556655556667666666555533 34444555677
Q ss_pred cchhhcc-CCchhHHHHHHHHHHHHHhhCh-hhhhhhc
Q 004132 244 PPLVTLL-SAEPEIQYVALRNINLIVQRRP-TILAHEI 279 (772)
Q Consensus 244 ~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p-~~~~~~~ 279 (772)
|.++.-- |.+.-+|-.+.=+|-.|+.+-- +-+.+|+
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL 488 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHL 488 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHh
Confidence 7666544 4566777776666666655433 4455554
No 140
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.45 E-value=0.67 Score=42.57 Aligned_cols=67 Identities=27% Similarity=0.428 Sum_probs=50.7
Q ss_pred HHHHHHHHhcccCChHHHHHHHHHHHhhhccccCCHHHHHHH------HhhhCCCCCHHHHHHHHHHHHHHhh
Q 004132 385 SIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLES------FLESFPEEPAQVQLQLLTATVKLFL 451 (772)
Q Consensus 385 ~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~~~~~L~~------l~~~f~~e~~~vq~~lLta~~Kl~~ 451 (772)
.++..|++.|+.-.+|...++++.=||||....++...+++. +++-+..++++||..+|.|+-|+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 577788888866568888999999999999988877666643 3344556899999999999998854
No 141
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.24 E-value=4.4 Score=48.37 Aligned_cols=193 Identities=18% Similarity=0.290 Sum_probs=105.6
Q ss_pred cHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc----cchh
Q 004132 289 PIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK----VNYV 364 (772)
Q Consensus 289 ~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~----~~~v 364 (772)
....|..=+|+|...++...+..|.+.+.. .+.+..- +...+..++.....-....++.+.+|++.. ..++
T Consensus 377 ~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~e---a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l 451 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDDE---AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYL 451 (618)
T ss_dssp -HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HHH---HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHHH---HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhH
Confidence 356788888888888888887777766554 2232222 333333333332122345777777777643 2456
Q ss_pred HHHHHHHHHHHHHhCc--------------ccHHHHHHHHHHhcc---cCChHHHHHHHHHHHhhhccccCCHHHHHHHH
Q 004132 365 VQEAIIVIKDIFRRYP--------------NTYESIIATLCESLD---TLDEPEAKASMIWIIGEYAERIDNADELLESF 427 (772)
Q Consensus 365 ~~e~i~~l~~i~~~~p--------------~~~~~ii~~L~~~l~---~~~~p~a~~~~iwilGEy~~~i~~~~~~L~~l 427 (772)
...++..+..+++++= ...+.++..+.+.+. +-.+.+-+..++-.||.-|. +.....|..+
T Consensus 452 ~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~~~i~~l~~~ 529 (618)
T PF01347_consen 452 RETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--PESIPVLLPY 529 (618)
T ss_dssp HHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---GGGHHHHHTT
T ss_pred HHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--chhhHHHHhH
Confidence 6677776666665421 112223333333333 11233455677778888874 2344555555
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHH
Q 004132 428 LESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 494 (772)
Q Consensus 428 ~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~~~~ 494 (772)
+..-...+..+|.+++.|+-++....|.+ .++.+..++.- ...++|||=-| |..|+..+|.
T Consensus 530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-v~~~l~~I~~n---~~e~~EvRiaA--~~~lm~~~P~ 590 (618)
T PF01347_consen 530 IEGKEEVPHFIRVAAIQALRRLAKHCPEK-VREILLPIFMN---TTEDPEVRIAA--YLILMRCNPS 590 (618)
T ss_dssp STTSS-S-HHHHHHHHHTTTTGGGT-HHH-HHHHHHHHHH----TTS-HHHHHHH--HHHHHHT---
T ss_pred hhhccccchHHHHHHHHHHHHHhhcCcHH-HHHHHHHHhcC---CCCChhHHHHH--HHHHHhcCCC
Confidence 55444557889999999999987777754 66666666653 45788998777 4566776553
No 142
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.05 E-value=0.76 Score=54.84 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=66.8
Q ss_pred HHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC---CChHHHHHHHHHHHHHHhhccccccccch
Q 004132 45 ILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD---DDPYVRKTAAICVAKLYDINAELVEDRGF 121 (772)
Q Consensus 45 lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d---~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~ 121 (772)
-...+.+.+.....+..-+-++|++||+++.++.++.+ .+.+.+ .+..+|..|+.|+.++...+|+.+
T Consensus 489 ~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l----~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v----- 559 (618)
T PF01347_consen 489 PYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVL----LPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV----- 559 (618)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHH----HTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH-----
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHH----HhHhhhccccchHHHHHHHHHHHHHhhcCcHHH-----
Confidence 33444555455567888899999999999999888884 455554 488999999999999977777664
Q ss_pred HHHHHHhhc--CCChhHHHHHHHHHHHH
Q 004132 122 LESLKDLIS--DNNPMVVANAVAALAEI 147 (772)
Q Consensus 122 ~~~L~~lL~--D~d~~Vv~~av~aL~eI 147 (772)
.+.+..++. ..++.|+.+|+.+|.+-
T Consensus 560 ~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 560 REILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 456666664 45788999998888764
No 143
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=89.88 E-value=41 Score=44.83 Aligned_cols=127 Identities=15% Similarity=0.213 Sum_probs=85.4
Q ss_pred CcchHHHHHHHHHHhccCC---CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-----hhh-----hHHHHHHHHHh
Q 004132 22 NLELKKLVYLYLINYAKSQ---PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-----VDK-----ITEYLCDPLQR 88 (772)
Q Consensus 22 ~~~lKrl~YL~l~~~~~~~---~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~-----~~e-----i~~~l~~~v~~ 88 (772)
-+.+.||+-+...+.-+-. +.+=-.+.+.|.+=-.++|..++..|+.+|-.+. .+| .-..+..++..
T Consensus 1110 ~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~ 1189 (1780)
T PLN03076 1110 VFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVI 1189 (1780)
T ss_pred hhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHH
Confidence 4457777777666554433 3333345666777666778888888887654432 223 22456666666
Q ss_pred hhCC-CChHHHHHHHHHHHHHHhhccccccccchHHHH---HHhhcCCChhHHHHHHHHHHHHHh
Q 004132 89 CLKD-DDPYVRKTAAICVAKLYDINAELVEDRGFLESL---KDLISDNNPMVVANAVAALAEIEE 149 (772)
Q Consensus 89 ~L~d-~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L---~~lL~D~d~~Vv~~av~aL~eI~~ 149 (772)
.+.+ .+.-||...+.|+..|.....+-+.. ||...+ .....|+++.++..|.-.+..|..
T Consensus 1190 im~~s~~~eVrE~ILeCv~qmI~s~~~nIkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1190 VMRKSNAVEIRELIIRCVSQMVLSRVNNVKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 5554 77799999999999999887777764 886544 334568888888888888877764
No 144
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.69 E-value=2.6 Score=45.69 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=68.9
Q ss_pred HhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHH-----HHHHhhhC-CCChHHHHHHHHHHHHHHhhccccccc----c
Q 004132 52 VKDSQDPNPLIRALAVRTMGCIR--VDKITEYLC-----DPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVED----R 119 (772)
Q Consensus 52 ~kDl~~~np~iralALrtl~~I~--~~ei~~~l~-----~~v~~~L~-d~~pyVRK~Aa~~l~kl~~~~p~~~~~----~ 119 (772)
..-++++++.+|.+|.+++|.+. +|..-+.++ ..+.+.+. |.+-.||++|..|+..+.+.++-.... .
T Consensus 130 l~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~ 209 (342)
T KOG2160|consen 130 LGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLN 209 (342)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence 34678999999999999999984 555554443 34445554 466689999999999999988765432 2
Q ss_pred chHHHHHHhhcC--CChhHHHHHHHHHHHHHhh
Q 004132 120 GFLESLKDLISD--NNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 120 ~~~~~L~~lL~D--~d~~Vv~~av~aL~eI~~~ 150 (772)
| ...|++.|.+ .+.....-++.++..+.+.
T Consensus 210 G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 210 G-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred C-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 3 3678888887 4555555666666555543
No 145
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.28 E-value=0.97 Score=52.85 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=98.6
Q ss_pred HHHhhcCCCcchHHHHHHH-HHHhccCCCcHHHHHHHHHHh-hcCCCCHHHHhHHHHHhcCC--ChhhhHHHHHHHHHhh
Q 004132 14 VVNCMQTENLELKKLVYLY-LINYAKSQPDLAILAVNTFVK-DSQDPNPLIRALAVRTMGCI--RVDKITEYLCDPLQRC 89 (772)
Q Consensus 14 vi~l~~s~~~~lKrl~YL~-l~~~~~~~~dl~lL~iNtl~k-Dl~~~np~iralALrtl~~I--~~~ei~~~l~~~v~~~ 89 (772)
|-+++..+|.-+|+-|-+. .+-|...-..- +|-.+.. ..+|.|..||-.|...+|-+ +.|+.++. +..+
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnnk---air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s----~V~l 596 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNNK---AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPS----TVSL 596 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCchh---hHHHhhcccccccchHHHHHHHHHheeeEecChhhchH----HHHH
Confidence 4457788888888877653 33343332221 2233332 24789999999999999987 46776665 4444
Q ss_pred h-CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHH-HhhCCC--CcccccHHHHHH
Q 004132 90 L-KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI-EENSSR--PIFEITSHTLSK 165 (772)
Q Consensus 90 L-~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI-~~~~~~--~~~~l~~~~~~~ 165 (772)
| .+-||+||--||++++=.+.-.- .- .-++.|..|.+|....|+-.|+.++.-| ++.... +...-+.+.+.+
T Consensus 597 Lses~N~HVRyGaA~ALGIaCAGtG-~~---eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~k 672 (929)
T KOG2062|consen 597 LSESYNPHVRYGAAMALGIACAGTG-LK---EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEK 672 (929)
T ss_pred HhhhcChhhhhhHHHHHhhhhcCCC-cH---HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence 4 45899999999999987664222 21 2578899999999999988887776544 333211 223334455666
Q ss_pred HHHHhhc--CChhHHHH
Q 004132 166 LLTALNE--CTEWGQVF 180 (772)
Q Consensus 166 Ll~~L~~--~~ew~qv~ 180 (772)
++..=.+ ...+|-+.
T Consensus 673 vI~dKhEd~~aK~GAil 689 (929)
T KOG2062|consen 673 VINDKHEDGMAKFGAIL 689 (929)
T ss_pred HhhhhhhHHHHHHHHHH
Confidence 6654332 34566443
No 146
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.26 E-value=2.2 Score=46.21 Aligned_cols=106 Identities=22% Similarity=0.160 Sum_probs=71.4
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhccccc---cccchHHHHHHhhc-CCChhHHHHHHHHHHHHHhhCCCC--ccc
Q 004132 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELV---EDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRP--IFE 157 (772)
Q Consensus 84 ~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~---~~~~~~~~L~~lL~-D~d~~Vv~~av~aL~eI~~~~~~~--~~~ 157 (772)
.++...++++++-||..|+..++.+.+-+|..- -+.++...|...|. |.+-.|...|+.|++-+..+.+.. .|.
T Consensus 127 ~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 127 VPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 445568899999999999999999999999642 23467788877776 555567789998888776654321 122
Q ss_pred ccHHHHHHHHHHhhc--CChhHHHHHHHHHhcccc
Q 004132 158 ITSHTLSKLLTALNE--CTEWGQVFILDALSRYKA 190 (772)
Q Consensus 158 l~~~~~~~Ll~~L~~--~~ew~qv~iL~~L~~~~~ 190 (772)
.... +.-|...+.. .+.-.|.+++.++..+..
T Consensus 207 ~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 207 KLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred hcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 2221 3344444444 456677777777766643
No 147
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.58 E-value=34 Score=41.20 Aligned_cols=244 Identities=17% Similarity=0.207 Sum_probs=138.8
Q ss_pred cHHHHHHHHHHhhcCC----CCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc
Q 004132 42 DLAILAVNTFVKDSQD----PNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE 114 (772)
Q Consensus 42 dl~lL~iNtl~kDl~~----~np~iralALrtl~~I~---~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~ 114 (772)
|+.=-.+|.+..||.+ .+|..++-|++.+--.| .++..-.+.|.+.+.|...++-|-+-||.|+=|+......
T Consensus 452 dv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 452 DVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred cHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 3444566788889987 45899999999887776 4566667778888999999999999999999888754332
Q ss_pred cccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhh----cCChhHHHHHHHHHhcccc
Q 004132 115 LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN----ECTEWGQVFILDALSRYKA 190 (772)
Q Consensus 115 ~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~----~~~ew~qv~iL~~L~~~~~ 190 (772)
++.-+.++- .|. ......+..|.+++. .-+|+.--.|+|++.....
T Consensus 532 ------------------~~~~if~~~----~ia--------p~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~ 581 (960)
T KOG1992|consen 532 ------------------SNAKIFGAE----DIA--------PFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQS 581 (960)
T ss_pred ------------------ccccccchh----hcc--------hHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHH
Confidence 111111110 000 000011222222222 2356666667777664421
Q ss_pred CCHHHHHHHHHHHh----HhhcCC-CH---HHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCCc-hhHHHHHH
Q 004132 191 ADAREAENIVERVT----PRLQHA-NC---AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAE-PEIQYVAL 261 (772)
Q Consensus 191 ~~~~e~~~il~~v~----~~L~~~-n~---aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~~-~~iryvaL 261 (772)
.--.-+..++..+. ..-++. || .-++|++-+++...-. .+++++..+-..+.|.+.+.++.| .|+-=.++
T Consensus 582 ~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~-~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvf 660 (960)
T KOG1992|consen 582 AIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCK-ANPSAVSSLEEALFPVFQTILSEDIQEFIPYVF 660 (960)
T ss_pred hhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11011222222222 222332 22 6788998888765432 256666666667777667777654 46555567
Q ss_pred HHHHHHHhhChh-hhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHH
Q 004132 262 RNINLIVQRRPT-ILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (772)
Q Consensus 262 ~~l~~i~~~~p~-~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~ 328 (772)
..+..++..+.. +-..+...|-++-++- | -....|+..+++-|..++......+.
T Consensus 661 Qlla~lve~~~~~ip~~~~~l~~~lLsp~----------l--W~r~gNipalvrLl~aflk~g~~~~~ 716 (960)
T KOG1992|consen 661 QLLAVLVEHSSGTIPDSYSPLFPPLLSPN----------L--WKRSGNIPALVRLLQAFLKTGSQIVE 716 (960)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHhcCHH----------H--HhhcCCcHHHHHHHHHHHhcCchhhc
Confidence 777777765532 2222222333322211 0 12467888888888888876554444
No 148
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.42 E-value=72 Score=39.29 Aligned_cols=115 Identities=20% Similarity=0.270 Sum_probs=75.3
Q ss_pred CCCHHHHhHHHHHhcCCCh---------hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh---ccccccccchHHH
Q 004132 57 DPNPLIRALAVRTMGCIRV---------DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI---NAELVEDRGFLES 124 (772)
Q Consensus 57 ~~np~iralALrtl~~I~~---------~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~---~p~~~~~~~~~~~ 124 (772)
..|+.-.--|||++|++.. .+|--.+...|...++++.-|.|-+|+..+.++... +|.... +..+.
T Consensus 429 ~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~ 506 (1010)
T KOG1991|consen 429 NKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALEL 506 (1010)
T ss_pred ccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHH
Confidence 3456666778888888752 233344677788889999999999999999998743 233322 24455
Q ss_pred HHHhhc-CCChhHHHHHHHHHHHHHhhCCCC---cccccHHHHHHHHHHhhcC
Q 004132 125 LKDLIS-DNNPMVVANAVAALAEIEENSSRP---IFEITSHTLSKLLTALNEC 173 (772)
Q Consensus 125 L~~lL~-D~d~~Vv~~av~aL~eI~~~~~~~---~~~l~~~~~~~Ll~~L~~~ 173 (772)
..++|. |.+--|..-|+-||.-...+.... .-...++...+|++..++.
T Consensus 507 t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 507 THNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred HHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc
Confidence 556665 888888888877887665543211 2233455666777665554
No 149
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=87.94 E-value=2.8 Score=50.45 Aligned_cols=129 Identities=20% Similarity=0.220 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCC-CCHHHHhHHHHHhcCCChhh--hHHHHHHHHHhhhCCCChHHHHHH
Q 004132 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQD-PNPLIRALAVRTMGCIRVDK--ITEYLCDPLQRCLKDDDPYVRKTA 101 (772)
Q Consensus 25 lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~-~np~iralALrtl~~I~~~e--i~~~l~~~v~~~L~d~~pyVRK~A 101 (772)
++-.+.+.+..+.=.+.+++--.+..|.|.|+- ...-+|..-+-+||.|++.= |++--+|-|-.+|.|+++.|||-+
T Consensus 947 vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt 1026 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQT 1026 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHH
Confidence 344455555444445567777777888888863 45678888888899988765 889899999999999999999999
Q ss_pred HHHHHHHHhhcccccccc--chHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcc
Q 004132 102 AICVAKLYDINAELVEDR--GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (772)
Q Consensus 102 a~~l~kl~~~~p~~~~~~--~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~ 156 (772)
++-+.++.+. +.++=. -|+-.+.. |-|.++-+..-|=-.+.++.....+..|
T Consensus 1027 ~ilL~rLLq~--~~vKw~G~Lf~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~P~~f 1080 (1529)
T KOG0413|consen 1027 IILLARLLQF--GIVKWNGELFIRFMLA-LLDANEDIRNDAKFYISEVLQSEEPNFF 1080 (1529)
T ss_pred HHHHHHHHhh--hhhhcchhhHHHHHHH-HcccCHHHHHHHHHHHHHHHhhcCccch
Confidence 9999999864 233200 02222232 3488899988887778888776544433
No 150
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.84 E-value=95 Score=40.01 Aligned_cols=142 Identities=19% Similarity=0.295 Sum_probs=85.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHHHHHHHHH
Q 004132 333 RAIGRCAIKLERAAERCISVLLELIKIKV---NYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWI 409 (772)
Q Consensus 333 ~aIg~la~k~~~~~~~~vd~Ll~ll~~~~---~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwi 409 (772)
..|.+||.+.++... +.+...+.... .-+....-..+.++.+-.|+.--.+++.|..-|.. +..+.|..++-+
T Consensus 207 ~li~~~a~~~~~~i~---~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~s-e~~~~Rl~a~~l 282 (1266)
T KOG1525|consen 207 DLIERCADNLEDTIA---NFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLS-EQEEVRLKAVKL 282 (1266)
T ss_pred HHHHHhhhhhchhHH---HHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-chHHHHHHHHHH
Confidence 445667776654432 22222222221 12222333466667666788777788888665533 233445445555
Q ss_pred Hhh----hccccC-CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhh
Q 004132 410 IGE----YAERID-NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDR 481 (772)
Q Consensus 410 lGE----y~~~i~-~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdR 481 (772)
+|+ ++..+. .-+++...|+.+|.+-+.+||...+....-+++..|+ ...-....+... ..+.|+++|-|
T Consensus 283 vg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~--~~~~~~~~~~l~-~~~~D~~~rir 356 (1266)
T KOG1525|consen 283 VGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS--IAKASTILLALR-ERDLDEDVRVR 356 (1266)
T ss_pred HHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch--hhhHHHHHHHHH-hhcCChhhhhe
Confidence 554 444333 3468889999999999999999999999888888875 333333344332 23466777665
No 151
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.76 E-value=38 Score=40.96 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHh--hccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC
Q 004132 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD--INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (772)
Q Consensus 78 i~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~--~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~ 154 (772)
+-...+......+.|+-+.+|-.|..-+.++++ .....+...+.++...++|.|.|+.|-.||+.++.-+|+..++.
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~ 802 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED 802 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh
Confidence 333445556677788999999999999999998 33344444577889999999999999999988666666555543
No 152
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=87.39 E-value=13 Score=41.51 Aligned_cols=138 Identities=16% Similarity=0.204 Sum_probs=96.1
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhccCCCc--------HHHHHHHHHHhhcCCCCHHHHhHHHHHh---cCC--Chhh
Q 004132 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPD--------LAILAVNTFVKDSQDPNPLIRALAVRTM---GCI--RVDK 77 (772)
Q Consensus 11 f~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~d--------l~lL~iNtl~kDl~~~np~iralALrtl---~~I--~~~e 77 (772)
...+..++=+++.+.+-.||=.+..+...... +-.+++=++.+|.+ +..-|-.|||.+ ..+ +..+
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~--~~~ER~QALkliR~~l~~~~~~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK--NDVEREQALKLIRAFLEIKKGPKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC--ChHHHHHHHHHHHHHHHhcCCccc
Confidence 33444345555588888888866555443222 34556667777754 567777777665 444 4567
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 004132 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 78 i~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~ 150 (772)
+-..++..|..+..+++...|..|...+..+.-.+|+++-..|=+..|.+.+.|....+..+.+.++..+...
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 7788888899999999999999999999999999999986545556777667666555555566666666543
No 153
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.29 E-value=15 Score=44.18 Aligned_cols=178 Identities=17% Similarity=0.258 Sum_probs=106.8
Q ss_pred HHHhHhhcCC-CHHHHHHHHHHHHHhhhhcCChHHHHHH-HHhcccchhhccC--CchhHHHHHHHHHHHHHhhChhh--
Q 004132 201 ERVTPRLQHA-NCAVVLSAVKMILQQMELITSTDVVRNL-CKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTI-- 274 (772)
Q Consensus 201 ~~v~~~L~~~-n~aVv~eaik~i~~~~~~i~~~~~~~~l-~~~~~~~L~~Lls--~~~~iryvaL~~l~~i~~~~p~~-- 274 (772)
..++.-|+.. +++.-+||+.=++.++- +.+++.+..+ ++.++|.|+.||+ .+++|.-.|.|+|..+....|.-
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~-mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLS-MGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHh-hcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 3444445443 77888888777766542 3455554432 4567888999996 46899999999999999888742
Q ss_pred --hhhhc-cee-----eeccCCcHhHHHHHHHHHHHhcccccHHHH----HHHHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 004132 275 --LAHEI-KVF-----FCKYNDPIYVKMEKLEIMIKLASDRNIDQV----LLEFKEYATEVDVDFVRKAVRAIGRCAIKL 342 (772)
Q Consensus 275 --~~~~~-~if-----~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~I----l~EL~~y~~~~d~~~~~~~v~aIg~la~k~ 342 (772)
+..|. .+| .+-|- .+--..|+.|-+|.-..+..-+ +.-.+.|+.-......|.++....+|+.++
T Consensus 249 ~vV~~~aIPvl~~kL~~Ieyi---DvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYI---DVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeecccchHHHHHhhhhhhhh---HHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22221 111 11111 2344445555454444443221 111223444444567888888889999887
Q ss_pred hhhHHH----HHHHHHHHHhhccchhHHHHHHHHHHHHHh---Cccc
Q 004132 343 ERAAER----CISVLLELIKIKVNYVVQEAIIVIKDIFRR---YPNT 382 (772)
Q Consensus 343 ~~~~~~----~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~---~p~~ 382 (772)
.++.-. .+-+|..+|+.....+++.+.+.+..++.. +|++
T Consensus 326 ~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~k 372 (1051)
T KOG0168|consen 326 RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDK 372 (1051)
T ss_pred CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHH
Confidence 654433 355677778888877777776666666543 4554
No 154
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=87.25 E-value=55 Score=36.58 Aligned_cols=355 Identities=15% Similarity=0.170 Sum_probs=177.1
Q ss_pred CCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhH
Q 004132 57 DPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (772)
Q Consensus 57 ~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V 136 (772)
..|+.....=+.-|+.+..++..+++..-+-..|......++ +.+.|...+.-.+ |.. ...+|.+.|...
T Consensus 61 ~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~------lf~~~a~~~k~~~---~~~-fl~ll~r~d~~i 130 (442)
T KOG2759|consen 61 ANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD------LFHDYAHKLKRTE---WLS-FLNLLNRQDTFI 130 (442)
T ss_pred cccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH------HHHHHHHhhhccc---hHH-HHHHHhcCChHH
Confidence 345666777788888888899999988888888876554443 3444444433322 433 345667777777
Q ss_pred HHHHHHHHHHHHhhCCC----CcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCH-HHHH---HHHHHHhHhh-
Q 004132 137 VANAVAALAEIEENSSR----PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA-REAE---NIVERVTPRL- 207 (772)
Q Consensus 137 v~~av~aL~eI~~~~~~----~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~-~e~~---~il~~v~~~L- 207 (772)
+.-+...+..+...+.. ..+.+....+..+++. ...+... ....++|+.+...++ +.+. +-+..+.+.+
T Consensus 131 v~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~-~~~~~~~-~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~ 208 (442)
T KOG2759|consen 131 VEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQS-STNNDYI-QFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA 208 (442)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc-cCCCchH-HHHHHHHHHHhcCcchhheeeecCcchhhHHHHh
Confidence 66444444444332211 1122222223333332 1122232 333455554433221 1100 0011222222
Q ss_pred -cCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH-HhcccchhhccC---CchhHHHHHHHHHHHHHhhChhhhhhhccee
Q 004132 208 -QHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS---AEPEIQYVALRNINLIVQRRPTILAHEIKVF 282 (772)
Q Consensus 208 -~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~-~~~~~~L~~Lls---~~~~iryvaL~~l~~i~~~~p~~~~~~~~if 282 (772)
.+.|-=+.|+.+-||-.+. + ++...+.+. -++++.|..+++ ++. +--+++..+..++.+.|
T Consensus 209 s~~~~~QlQYqsifciWlLt--F-n~~~ae~~~~~~li~~L~~Ivk~~~KEK-V~Rivlai~~Nll~k~~---------- 274 (442)
T KOG2759|consen 209 STKCGFQLQYQSIFCIWLLT--F-NPHAAEKLKRFDLIQDLSDIVKESTKEK-VTRIVLAIFRNLLDKGP---------- 274 (442)
T ss_pred ccCcchhHHHHHHHHHHHhh--c-CHHHHHHHhhccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCc----------
Confidence 3445567777777775431 1 333322210 022333334442 122 22233444444443332
Q ss_pred eeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh--hhhHHHHHH-HHHHHHhh
Q 004132 283 FCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL--ERAAERCIS-VLLELIKI 359 (772)
Q Consensus 283 ~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~--~~~~~~~vd-~Ll~ll~~ 359 (772)
+.+.|+...-.+.. + ++...++-|.+ -.-.|+|++.++-.--..+-..+ -+..+.|.. .....|.-
T Consensus 275 ------~~~~~k~~~~~mv~-~---~v~k~l~~L~~-rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~W 343 (442)
T KOG2759|consen 275 ------DRETKKDIASQMVL-C---KVLKTLQSLEE-RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEW 343 (442)
T ss_pred ------hhhHHHHHHHHHHh-c---CchHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCC
Confidence 33444432222211 1 22223322221 12345555544332222222211 112333433 33445555
Q ss_pred ccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccCCHHHHHHH------HhhhCCC
Q 004132 360 KVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLES------FLESFPE 433 (772)
Q Consensus 360 ~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~~~~~L~~------l~~~f~~ 433 (772)
+..|....-|.-=.+-+.+ + .-.++..|.+.|+.-.+|...++++.=||||....+....++++ +.+....
T Consensus 344 SP~Hk~e~FW~eNa~rlne--n-nyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh 420 (442)
T KOG2759|consen 344 SPVHKSEKFWRENADRLNE--N-NYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNH 420 (442)
T ss_pred CccccccchHHHhHHHHhh--c-cHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcC
Confidence 5666666666532222222 2 23578888999988778999999999999999888776666654 3455567
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 004132 434 EPAQVQLQLLTATVKLFL 451 (772)
Q Consensus 434 e~~~vq~~lLta~~Kl~~ 451 (772)
++++||..+|.|+-|+-.
T Consensus 421 ~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 421 EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 899999999999888754
No 155
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=87.19 E-value=6.8 Score=39.10 Aligned_cols=107 Identities=20% Similarity=0.238 Sum_probs=70.3
Q ss_pred CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHH--------------HHHHhhhCCCChHHHHHHHHHHH
Q 004132 41 PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLC--------------DPLQRCLKDDDPYVRKTAAICVA 106 (772)
Q Consensus 41 ~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~--------------~~v~~~L~d~~pyVRK~Aa~~l~ 106 (772)
-++.++++.-+.+. ..+..........+..+..-++++.++ +.+.+...|.++++|+.|..+..
T Consensus 53 ~~~~~lal~~~~~~--~~~~~~~~~~~~~i~~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~w~~s~~~~~rR~~~~~~~ 130 (197)
T cd06561 53 REAQYLALDLLDKK--ELKEEDLERFEPWIEYIDNWDLVDSLCANLLGKLLYAEPELDLLEEWAKSENEWVRRAAIVLLL 130 (197)
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCcchHHHHHHHhCCcHHHHHHHHHHHH
Confidence 44555555444443 333333333444443444444443332 34677778999999999999999
Q ss_pred HHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCC
Q 004132 107 KLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (772)
Q Consensus 107 kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~ 152 (772)
+.+....+ . ..+++.+..++.|.+..|.-+.--+|.++...++
T Consensus 131 ~~~~~~~~-~--~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 131 RLIKKETD-F--DLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHhccc-H--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 98876222 2 2377888899999999999888889999987654
No 156
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=87.17 E-value=26 Score=39.56 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=99.4
Q ss_pred CCcHhHHHHHHHHHHHh-cc------cccHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHH
Q 004132 287 NDPIYVKMEKLEIMIKL-AS------DRNIDQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIK----LERAAERCISVLL 354 (772)
Q Consensus 287 ~d~~~Ik~~kL~lL~~L-~n------~~Nv~~Il~EL~~y~~~-~d~~~~~~~v~aIg~la~k----~~~~~~~~vd~Ll 354 (772)
++...=+..+|.=|..| |. +++..+|+.-+.+-+.+ .|...+..+.|-|+.+... +..+.+-.+..++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 34555566777644444 33 24567777777777776 5555666667777665543 3344555556566
Q ss_pred HHHhhccchhHHHHHHHHHHHHHh-CcccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccCC------HHHHHHHH
Q 004132 355 ELIKIKVNYVVQEAIIVIKDIFRR-YPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN------ADELLESF 427 (772)
Q Consensus 355 ~ll~~~~~~v~~e~i~~l~~i~~~-~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~------~~~~L~~l 427 (772)
+.-.+..+.|...+......++.. .|. ..|..++..+-..++|.+ .+++-++-+-.+.++- .+|+.-.+
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~---~~I~~i~~~Ilt~D~~~~-~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~ 453 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPL---QCIVNISPLILTADEPRA-VAVIKMLTKLFERLSAEELLNLLPDIAPCV 453 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCch---hHHHHHhhHHhcCcchHH-HHHHHHHHHHHhhcCHHHHHHhhhhhhhHH
Confidence 655555566665555543333333 343 234455555544556655 3355566665554431 35666777
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHhhcCC
Q 004132 428 LESFPEEPAQVQLQLLTATVKLFLKKP 454 (772)
Q Consensus 428 ~~~f~~e~~~vq~~lLta~~Kl~~~~p 454 (772)
++.|...+..||-..+-+++-++.+..
T Consensus 454 iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 454 IQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 888888899999999998888887765
No 157
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=86.16 E-value=11 Score=37.41 Aligned_cols=155 Identities=20% Similarity=0.271 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhh-cccc--------cccc------chHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHH
Q 004132 97 VRKTAAICVAKLYDI-NAEL--------VEDR------GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSH 161 (772)
Q Consensus 97 VRK~Aa~~l~kl~~~-~p~~--------~~~~------~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~ 161 (772)
||-.|+.|+.-+.+. +|.. +++. .-...+.-++.|.++.|+.+|+.++..+.+... .
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk-~------- 73 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSK-P------- 73 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccH-H-------
Confidence 677777777777766 3221 1211 223455667899999999999999999876531 1
Q ss_pred HHHHHHHHhh----cCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhc-CCCHHHHHHHHHHHHHhhhhcCChHHHH
Q 004132 162 TLSKLLTALN----ECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQ-HANCAVVLSAVKMILQQMELITSTDVVR 236 (772)
Q Consensus 162 ~~~~Ll~~L~----~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~-~~n~aVv~eaik~i~~~~~~i~~~~~~~ 236 (772)
.+. ....-+ .+.++...- =..+ ..+-..+...|+ ..++.++-+..|++..+....+-...-.
T Consensus 74 ~L~-~Ae~~~~~~~sFtslS~tL-a~~i-----------~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~ 140 (182)
T PF13251_consen 74 FLA-QAEESKGPSGSFTSLSSTL-ASMI-----------MELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPP 140 (182)
T ss_pred HHH-HHHhcCCCCCCcccHHHHH-HHHH-----------HHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCH
Confidence 111 111000 111221110 0000 011122233333 3456677777777654432111111112
Q ss_pred HHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhCh
Q 004132 237 NLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP 272 (772)
Q Consensus 237 ~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p 272 (772)
.+..+++..+..++ +.|++++-.+|..+..++...+
T Consensus 141 ~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 141 GLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 23333444444444 5899999999999988876543
No 158
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=85.56 E-value=75 Score=36.56 Aligned_cols=194 Identities=14% Similarity=0.152 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHhcccccHHHHHHHHHHhhhhc------cHHHHHHHHHHHHHHHHhh-----hh---hHHHHHHHHHHH
Q 004132 291 YVKMEKLEIMIKLASDRNIDQVLLEFKEYATEV------DVDFVRKAVRAIGRCAIKL-----ER---AAERCISVLLEL 356 (772)
Q Consensus 291 ~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~------d~~~~~~~v~aIg~la~k~-----~~---~~~~~vd~Ll~l 356 (772)
.....+-+++-.|+.+......+..|.+++.+. +....|-+|.-++.+..+. +. .....+..+...
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~a 309 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNA 309 (464)
T ss_pred ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHH
Confidence 456678889999999999999999999998332 3455677888777766554 11 112367778888
Q ss_pred HhhccchhHHHHHHHHHHHH-HhCccc--------HHHHHHHHHHhcccCChHH--------HHHHHHHHHh---h-h--
Q 004132 357 IKIKVNYVVQEAIIVIKDIF-RRYPNT--------YESIIATLCESLDTLDEPE--------AKASMIWIIG---E-Y-- 413 (772)
Q Consensus 357 l~~~~~~v~~e~i~~l~~i~-~~~p~~--------~~~ii~~L~~~l~~~~~p~--------a~~~~iwilG---E-y-- 413 (772)
++.+..-|..|++..+..++ +++-.. .-.++..+.+.+.....+. ..+.+--++. + |
T Consensus 310 l~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~ 389 (464)
T PF11864_consen 310 LKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQ 389 (464)
T ss_pred HhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhC
Confidence 88777888889998888888 554321 1123333333333222111 2211111111 1 1
Q ss_pred ccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHhhhcCCCChHHHhhHHHHH
Q 004132 414 AERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE-GPQQMIQVVLNNATVETDNPDLRDRAYIYW 486 (772)
Q Consensus 414 ~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~-~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~ 486 (772)
++......++++-|.+....-++..-..+|..-.|. -.|.. +=.+.+..+++..+..+.++++|-+|....
T Consensus 390 ~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl~~~~~~--~~Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l 461 (464)
T PF11864_consen 390 HDFNGPKDKLFNFFERVHSYLPDSSALLVLFYEERS--CSPSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVL 461 (464)
T ss_pred CCcCccHHHHHHHHHHHhccCCHHHHHHHHHHHhcc--cCCCChHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 111112345555555554444444433344222222 23432 124556667776554568899999887643
No 159
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=85.38 E-value=7 Score=39.07 Aligned_cols=134 Identities=12% Similarity=0.119 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHH
Q 004132 309 IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIA 388 (772)
Q Consensus 309 v~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~ 388 (772)
++.-++.+++.+...+...+..+++-|+.+...-=-....|+.+++.|......+++..+...++.+..|||+..+.-
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~-- 83 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR-- 83 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH--
Confidence 344566666777778888888888888776665333456799999999999899999999999999999988642211
Q ss_pred HHHHhcccCChHHHHHHHHHHHhhhccccC----CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCC
Q 004132 389 TLCESLDTLDEPEAKASMIWIIGEYAERID----NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKP 454 (772)
Q Consensus 389 ~L~~~l~~~~~p~a~~~~iwilGEy~~~i~----~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p 454 (772)
+.+ .++.+.-+...-+++... .....+..+..-+. .+...|...|++++|.|....
T Consensus 84 -~~~--------gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 84 -YSE--------GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred -HHH--------HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhc
Confidence 111 122223222222222211 13445555554444 556677788888888887654
No 160
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=84.82 E-value=27 Score=34.58 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=44.9
Q ss_pred HHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 004132 295 EKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLE 355 (772)
Q Consensus 295 ~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ 355 (772)
+++..+..=.++.|++.++++|.....+.+.+....+++.|-..|..-+.....|...+-.
T Consensus 2 r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~ 62 (209)
T PF02854_consen 2 RKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAA 62 (209)
T ss_dssp HHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred chHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHH
Confidence 4455555545699999999999988776688899999999988887766555555444433
No 161
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=84.50 E-value=1.2 Score=32.91 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=26.1
Q ss_pred HHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHH
Q 004132 104 CVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAA 143 (772)
Q Consensus 104 ~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~a 143 (772)
|+..+...+|+++....+.+.+...|.|+++.|.-+|+-+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4556666677766655566666777777777777766543
No 162
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.28 E-value=12 Score=42.85 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=62.1
Q ss_pred CCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHh-----HHHHHhcCCChhhhHHHHHHHHHhhhCCCCh
Q 004132 21 ENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRA-----LAVRTMGCIRVDKITEYLCDPLQRCLKDDDP 95 (772)
Q Consensus 21 ~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~ira-----lALrtl~~I~~~ei~~~l~~~v~~~L~d~~p 95 (772)
+.-.+||-.-+.+....--.+|++-=.||-+.. |.++..|. +|+-..|. +...++..+ +.-..+|.+.
T Consensus 494 qhe~i~Rglgig~aLi~ygrqe~add~I~ell~---d~ds~lRy~G~fs~alAy~GT-gn~~vv~~l---Lh~avsD~nD 566 (926)
T COG5116 494 QHERIKRGLGIGFALILYGRQEMADDYINELLY---DKDSILRYNGVFSLALAYVGT-GNLGVVSTL---LHYAVSDGND 566 (926)
T ss_pred hhhhHHhhhhhhhhHhhhhhHHHHHHHHHHHhc---CchHHhhhccHHHHHHHHhcC-CcchhHhhh---heeecccCch
Confidence 344466665554433333334455444554444 44455553 23322222 222333332 2334677888
Q ss_pred HHHHHHHHHHHHHHhhccccccccchHHHHHHhhc-CCChhHHHHHHHHHHHHHhhC
Q 004132 96 YVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENS 151 (772)
Q Consensus 96 yVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~-D~d~~Vv~~av~aL~eI~~~~ 151 (772)
-|||.|++|++-++-.+|+++. ...++|. ..|+.|++....+|..-|...
T Consensus 567 DVrRAAViAlGfvc~~D~~~lv------~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 567 DVRRAAVIALGFVCCDDRDLLV------GTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred HHHHHHHHheeeeEecCcchhh------HHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 8888888888777766766532 2333443 556777766666666655543
No 163
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.01 E-value=7 Score=41.68 Aligned_cols=120 Identities=14% Similarity=0.212 Sum_probs=85.0
Q ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h---hhhHHHHHHHHHhhhCCCChHHHH
Q 004132 27 KLVYLYLINYAKSQ-PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V---DKITEYLCDPLQRCLKDDDPYVRK 99 (772)
Q Consensus 27 rl~YL~l~~~~~~~-~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~---~---~ei~~~l~~~v~~~L~d~~pyVRK 99 (772)
..-|+...+|-.-. ||. +++...+-|.|.|....+-+|..|.++. . ..+...++..|.+-++....-|-|
T Consensus 71 ~~e~~~sk~l~~fd~p~~---al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~Vsr 147 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPEA---ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSR 147 (334)
T ss_pred cHHHhhhcccCccCcHHH---HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 56677777776543 554 5577788899999999888888777553 2 234455677788999999999999
Q ss_pred HHHHHHHHHHhhccccccccchHHHHHHhh---cCCChhHHHHHHHHHHHHHhh
Q 004132 100 TAAICVAKLYDINAELVEDRGFLESLKDLI---SDNNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 100 ~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL---~D~d~~Vv~~av~aL~eI~~~ 150 (772)
+|++|+.-+|...-+.+.. ..-..+..|| .+.|-.|+-.|-.+|..+-.+
T Consensus 148 aA~~t~~difs~ln~~i~~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 148 AACMTLADIFSSLNNSIDQ-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH 200 (334)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence 9999999999876665543 2223334444 255677777777777766543
No 164
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=83.99 E-value=1.1e+02 Score=37.34 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=86.7
Q ss_pred cCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhh-------hhhc
Q 004132 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTIL-------AHEI 279 (772)
Q Consensus 208 ~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~-------~~~~ 279 (772)
.+.-+-+...|++++..+. .+..+..+.-.+...|..+.+ .+.++--+...+|...+.-+|+.- .+..
T Consensus 501 ~~~~~~~ki~a~~~~~~~~----~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~ 576 (1005)
T KOG2274|consen 501 MDVPPPVKISAVRAFCGYC----KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLT 576 (1005)
T ss_pred cCCCCchhHHHHHHHHhcc----CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHH
Confidence 3555677777888776643 222222222223333445554 466777777888888888777531 1221
Q ss_pred ceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q 004132 280 KVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKI 359 (772)
Q Consensus 280 ~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~ 359 (772)
--+|.+|.+|++|--.+. +.++.+...+.++.+..+.++.+++..+..
T Consensus 577 i~lF~k~s~DP~V~~~~q--------------------------------d~f~el~q~~~~~g~m~e~~iPslisil~~ 624 (1005)
T KOG2274|consen 577 INLFLKYSEDPQVASLAQ--------------------------------DLFEELLQIAANYGPMQERLIPSLISVLQL 624 (1005)
T ss_pred HHHHHHhcCCchHHHHHH--------------------------------HHHHHHHHHHHhhcchHHHHHHHHHHHHcC
Confidence 223455555555533333 333444556677778888899999999887
Q ss_pred ccch----hHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHhc
Q 004132 360 KVNY----VVQEAIIVIKDIFRRYPN-----TYESIIATLCESL 394 (772)
Q Consensus 360 ~~~~----v~~e~i~~l~~i~~~~p~-----~~~~ii~~L~~~l 394 (772)
.++. ...-++.++.-++|+-|. ...++.+.+.++.
T Consensus 625 ~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t 668 (1005)
T KOG2274|consen 625 NADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT 668 (1005)
T ss_pred cccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe
Confidence 7632 333455666667787653 2445555555543
No 165
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=83.72 E-value=6.3 Score=37.05 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHhhc-cccccccchHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004132 95 PYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (772)
Q Consensus 95 pyVRK~Aa~~l~kl~~~~-p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~ 148 (772)
++||.+.+.++..++..+ |+.-++ |++.+..++.. ++.-....+..|..+.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~--~l~~l~~~~~~-~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPD--FLEDLLQLLQS-SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCch--HHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 689999999999999765 777664 88888888776 4555555555555444
No 166
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=83.43 E-value=1.6e+02 Score=38.74 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=56.5
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHH-HHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHH
Q 004132 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT-LSKLLTALNECTEWGQVFILDALSRYKAADAREAEN 198 (772)
Q Consensus 120 ~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~-~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~ 198 (772)
.+.+.|.+++.-....+..-.+..|=||...+. |.. +..|...+.+ ++-+.+-+|++|..+.- +++...+
T Consensus 192 ~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~-------h~~v~~~L~~ll~~-~~~L~~~iLd~Ls~L~L-s~~~l~~ 262 (1426)
T PF14631_consen 192 ELTDKLFEVLSIAPVELQKEIISSLPEILDDSQ-------HDEVVEELLELLQE-NPELTVPILDALSNLNL-SPELLEE 262 (1426)
T ss_dssp HHHHHHHHHHHHS-TTTHHHHHHTHHHHS-GGG-------HHHHHHHHHHHHHH--STTHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcchh-------HHHHHHHHHHHHhc-CCchhhhHHHHHhcCCC-CHHHHHH
Confidence 466667777765566677777777777765432 223 3444444433 44558899999998864 4566666
Q ss_pred HHHHHhHhhcCCCHHHHHHHHHHHHH
Q 004132 199 IVERVTPRLQHANCAVVLSAVKMILQ 224 (772)
Q Consensus 199 il~~v~~~L~~~n~aVv~eaik~i~~ 224 (772)
+.+.+...|.+.....+=.-||.+++
T Consensus 263 vr~~vl~~L~s~~~e~LP~lirFLL~ 288 (1426)
T PF14631_consen 263 VREKVLEKLSSVDLEDLPVLIRFLLQ 288 (1426)
T ss_dssp HHHHHHHSTTSS-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhhhHHHHHHHHH
Confidence 77777777766655444445566655
No 167
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=82.43 E-value=65 Score=36.44 Aligned_cols=137 Identities=14% Similarity=0.239 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhc-cchhHHHHHHHHHHHHHhCc-ccHHHHHHHHHHhc---ccCC-hHHHHHHHHHHHhhhccccCC-HH
Q 004132 349 CISVLLELIKIK-VNYVVQEAIIVIKDIFRRYP-NTYESIIATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-AD 421 (772)
Q Consensus 349 ~vd~Ll~ll~~~-~~~v~~e~i~~l~~i~~~~p-~~~~~ii~~L~~~l---~~~~-~p~a~~~~iwilGEy~~~i~~-~~ 421 (772)
+.+.+.+++... .-+.+.|+...+..++..+. ...+.-...+.+.+ -... -+.-...+..|+..|.+.-+. +.
T Consensus 175 i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~ 254 (409)
T PF01603_consen 175 INNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAE 254 (409)
T ss_dssp HHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHH
T ss_pred HHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH
Confidence 344555555533 34467788888888888654 22222222222221 1111 222245677788777764433 67
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHH---HHHHHHHhhhcCCCChHHHhhHHHHH
Q 004132 422 ELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQ---MIQVVLNNATVETDNPDLRDRAYIYW 486 (772)
Q Consensus 422 ~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~---~v~~vl~~~~~~s~~~dvrdRA~~y~ 486 (772)
.+++.++..++-.++.-+...|.-+..+....+.+.... .+-+.+..|. +|.+..|-+||..+|
T Consensus 255 ~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci-~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 255 PVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCI-SSPHFQVAERALYFW 321 (409)
T ss_dssp HHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHH-TSSSHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 899999999999999999999999999987766432222 2334455565 579999999999887
No 168
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=82.39 E-value=1.6 Score=44.28 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=57.9
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc
Q 004132 49 NTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED 118 (772)
Q Consensus 49 Ntl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~ 118 (772)
..+.+=++|.|+.+|-.|+-++......+-.+.+...+...+.|++.||||..+-++..++..+|+.+..
T Consensus 123 ~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 123 ELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp HHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3445556889999999999888877766777888888999999999999999999999999999988653
No 169
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=82.35 E-value=92 Score=35.03 Aligned_cols=260 Identities=13% Similarity=0.142 Sum_probs=143.7
Q ss_pred HHHHhhcC-CCcchHHHHHHHHHHhccCC--------CcHHHHHHHHHHh--hcCCCC----HHHHhHHHHHhcCCChhh
Q 004132 13 DVVNCMQT-ENLELKKLVYLYLINYAKSQ--------PDLAILAVNTFVK--DSQDPN----PLIRALAVRTMGCIRVDK 77 (772)
Q Consensus 13 ~vi~l~~s-~~~~lKrl~YL~l~~~~~~~--------~dl~lL~iNtl~k--Dl~~~n----p~iralALrtl~~I~~~e 77 (772)
+.++++.+ -+..+.-|++-.+--.++.+ ..+..-.+|-++| |+.+.. .+-|+.-+-.+-..+.+.
T Consensus 227 ~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS 306 (604)
T KOG4500|consen 227 MLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES 306 (604)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH
Confidence 34455444 34444555554333333321 1144555566654 666543 444566666665566666
Q ss_pred hH-----HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhc-----CCChhHHHHHHHHH
Q 004132 78 IT-----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLIS-----DNNPMVVANAVAAL 144 (772)
Q Consensus 78 i~-----~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~L~~lL~-----D~d~~Vv~~av~aL 144 (772)
|- +.+...+..++.+.+....-+++++++.+.|.+.. +++ .+|.+.|.++|. |.|..+++++++||
T Consensus 307 Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsAL 385 (604)
T KOG4500|consen 307 MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSAL 385 (604)
T ss_pred HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHH
Confidence 43 33566688888899999999999999999987654 333 478888888773 57788899999999
Q ss_pred HHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHH------HHHHHHHhHhhcCCCHH-HHHH
Q 004132 145 AEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA------ENIVERVTPRLQHANCA-VVLS 217 (772)
Q Consensus 145 ~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~------~~il~~v~~~L~~~n~a-Vv~e 217 (772)
..+.---+....-+..+....++..++--.|-.+-+++-.|+...-..+.-+ ..+++++...-++.+.+ |.-|
T Consensus 386 Rnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gE 465 (604)
T KOG4500|consen 386 RNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGE 465 (604)
T ss_pred HhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhh
Confidence 7654211111111122334456666665555566666666655432222122 23556666666777765 8889
Q ss_pred HHHHHHHhhhhcCChHHHHHHHH-hcccchhhcc-CCchhHHHHHHHHHHHHHhhChh
Q 004132 218 AVKMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPT 273 (772)
Q Consensus 218 aik~i~~~~~~i~~~~~~~~l~~-~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~ 273 (772)
.-|++.-+.......+.+..+.+ ..+..+++++ +..-+.|--+|-++..+...++.
T Consensus 466 SnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~ 523 (604)
T KOG4500|consen 466 SNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKYLI 523 (604)
T ss_pred hhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhcc
Confidence 88887654321101111111100 0111233433 23445666666666666555543
No 170
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.89 E-value=57 Score=33.80 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=11.2
Q ss_pred hcCChhHHHHHHHHHhcccc
Q 004132 171 NECTEWGQVFILDALSRYKA 190 (772)
Q Consensus 171 ~~~~ew~qv~iL~~L~~~~~ 190 (772)
.++++=.+...|+.++.+++
T Consensus 132 ~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 132 QSCDEVAQALALEALAPLCE 151 (234)
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 34555555556666655553
No 171
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.53 E-value=1e+02 Score=35.15 Aligned_cols=132 Identities=15% Similarity=0.218 Sum_probs=86.6
Q ss_pred CCcchHHHHHH-HHHHhccCC--CcHHHHHHHHHHh---hcCCCCHHHHhHHHHHhcCCCh------hhhHHHHHHHHHh
Q 004132 21 ENLELKKLVYL-YLINYAKSQ--PDLAILAVNTFVK---DSQDPNPLIRALAVRTMGCIRV------DKITEYLCDPLQR 88 (772)
Q Consensus 21 ~~~~lKrl~YL-~l~~~~~~~--~dl~lL~iNtl~k---Dl~~~np~iralALrtl~~I~~------~ei~~~l~~~v~~ 88 (772)
+.++.+|++=. ++.....+. ++ .-+..|.+.- -..|++..+|++|+|.|++... ......+...|.+
T Consensus 228 s~~~~~ritd~Af~ael~~~~~l~~-~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~ 306 (533)
T KOG2032|consen 228 SEKENGRITDIAFFAELKRPKELDK-TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIR 306 (533)
T ss_pred hhcccchHHHHHHHHHHhCcccccc-cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHH
Confidence 44455666555 333333322 21 1234455444 4478999999999999999753 2344556666777
Q ss_pred hhCC-CChHHHHHHHHHHHHHHhhccc-cccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCC
Q 004132 89 CLKD-DDPYVRKTAAICVAKLYDINAE-LVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (772)
Q Consensus 89 ~L~d-~~pyVRK~Aa~~l~kl~~~~p~-~~~~--~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~ 153 (772)
.|-| .+.-|--.|..|+.++..+-.. .++. -+....++.+..|.++.+..+|+.++..+.+--++
T Consensus 307 gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~ 375 (533)
T KOG2032|consen 307 GLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGG 375 (533)
T ss_pred HHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCC
Confidence 7766 6678999999999888754221 1111 01346788899999999999999999888775443
No 172
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=80.58 E-value=18 Score=37.69 Aligned_cols=127 Identities=18% Similarity=0.223 Sum_probs=69.8
Q ss_pred hhCCCChHHHHHHHHHHHHHHhhccccc------cc-----cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhC-CCCcc
Q 004132 89 CLKDDDPYVRKTAAICVAKLYDINAELV------ED-----RGFLESLKDLISDNNPMVVANAVAALAEIEENS-SRPIF 156 (772)
Q Consensus 89 ~L~d~~pyVRK~Aa~~l~kl~~~~p~~~------~~-----~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~-~~~~~ 156 (772)
+|.|.++-|.|.|+.|...+|+.-=+.+ +. ..+.+.+..++.+.+++|..+|+..+..+.-.. ++..-
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 5789999999999999999998632222 10 123456667788899999999998887654321 11000
Q ss_pred cccHHHHHH--HHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCC--HHHHHHHHHHHHHh
Q 004132 157 EITSHTLSK--LLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHAN--CAVVLSAVKMILQQ 225 (772)
Q Consensus 157 ~l~~~~~~~--Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n--~aVv~eaik~i~~~ 225 (772)
.-....-.. =+..+..-.|.....-| +.|+..+++.+...+.... +.++..++.++..+
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~L----------e~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~I 143 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQL----------EAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNI 143 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHH----------HHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 000000000 00001111122211111 4678889999988887654 56666666666543
No 173
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=80.20 E-value=33 Score=42.07 Aligned_cols=174 Identities=17% Similarity=0.124 Sum_probs=119.5
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-------hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc-
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-------ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED- 118 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrtl~~I~~~e-------i~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~- 118 (772)
++-.|...+.|++.--|.-||+.|-.+.... -...+...++..+.|.|-.|-..|+.|+..+....+.....
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 4456788889999999999999886654222 23456666788889999999999999999999887766543
Q ss_pred -cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHH----HHHhccccCC-
Q 004132 119 -RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFIL----DALSRYKAAD- 192 (772)
Q Consensus 119 -~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL----~~L~~~~~~~- 192 (772)
....+.+.+.+.|.-+.++-.++.++..++...+ + ......++..+..-+|=....+. +.++.+.+..
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--l----~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--L----SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc--H----HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 1234666777889999999999999988876322 1 12345555666655554333333 3444444321
Q ss_pred -HHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhh
Q 004132 193 -AREAENIVERVTPRLQHANCAVVLSAVKMILQQM 226 (772)
Q Consensus 193 -~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~ 226 (772)
......++..+....++.+..|...|..++..++
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 2344566777777778888899888887776544
No 174
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=79.90 E-value=27 Score=38.27 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=58.8
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHhhc-CCCCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhCCCChHHHHHHHH
Q 004132 28 LVYLYLINYAKSQPDLAILAVNTFVKDS-QDPNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAI 103 (772)
Q Consensus 28 l~YL~l~~~~~~~~dl~lL~iNtl~kDl-~~~np~iralALrtl~~I~---~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~ 103 (772)
+.|=.+..+.. . +++--+++.|..=+ ++.|+.....++.+++.-. ..++-+.+...++++++|+.+-|||.-+.
T Consensus 6 ~~~~~L~~l~~-~-~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~ 83 (339)
T PF12074_consen 6 LHASMLSSLPS-S-SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLL 83 (339)
T ss_pred HHHHHHHhCCC-c-chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 33334444444 2 25555566655544 3478888888888877643 46777888899999999999999999999
Q ss_pred HHHHHHh
Q 004132 104 CVAKLYD 110 (772)
Q Consensus 104 ~l~kl~~ 110 (772)
+++.++.
T Consensus 84 ~~~~~~~ 90 (339)
T PF12074_consen 84 CLGEALW 90 (339)
T ss_pred HHHHHHh
Confidence 9999986
No 175
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=79.84 E-value=19 Score=41.87 Aligned_cols=127 Identities=18% Similarity=0.168 Sum_probs=85.7
Q ss_pred CCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCC--CHHHHhHHHHHh---cCC---Chhh----hHHHHHHHHH
Q 004132 20 TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDP--NPLIRALAVRTM---GCI---RVDK----ITEYLCDPLQ 87 (772)
Q Consensus 20 s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~--np~iralALrtl---~~I---~~~e----i~~~l~~~v~ 87 (772)
+..+..|-|.||.=+..+-...+-.+ ..+...+.++ |.-.|.+++..+ ..+ ..+. +.+.+...+.
T Consensus 296 ~~~lq~kIL~~L~kS~~Aa~~~~~~~---~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~ 372 (501)
T PF13001_consen 296 SPRLQEKILSLLSKSVIAATSFPNIL---QIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGW 372 (501)
T ss_pred CHHHHHHHHHHHHHhHHHHhCCccHH---HHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCc
Confidence 34455677777766666554433222 2234466666 788999999999 433 2333 4444445555
Q ss_pred hhhC--------CCChHHHHHHHHHHHHHHhhccccc-cccchHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 004132 88 RCLK--------DDDPYVRKTAAICVAKLYDINAELV-EDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (772)
Q Consensus 88 ~~L~--------d~~pyVRK~Aa~~l~kl~~~~p~~~-~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~ 149 (772)
+.+. ..+.-.|..|..|++.+.+..|.++ ++-+++..|-+-|.+..+.|+.+.--||..+..
T Consensus 373 p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 373 PLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 6663 2577899999999999999999998 455566667666788888988887777766543
No 176
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=79.63 E-value=18 Score=35.11 Aligned_cols=112 Identities=19% Similarity=0.257 Sum_probs=74.5
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHhcccC-ChHHH--HHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 004132 369 IIVIKDIFRRYPNTYESIIATLCESLDTL-DEPEA--KASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTA 445 (772)
Q Consensus 369 i~~l~~i~~~~p~~~~~ii~~L~~~l~~~-~~p~a--~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta 445 (772)
+..+..+++.++..+..|++.+.+.+-.. ..|-. .....|++-.+...+.+...-+..+++.+..-+.++-..++.|
T Consensus 39 ~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~A 118 (158)
T PF14676_consen 39 IQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRA 118 (158)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34667777788888888888887766322 22222 2344555555655556666777788888888889998899999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHH
Q 004132 446 TVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAY 483 (772)
Q Consensus 446 ~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~ 483 (772)
+.=+.--.+. .++.+--+|+.+.. +.+.+.|.-|.
T Consensus 119 l~PLi~~s~~--lrd~lilvLRKamf-~r~~~~R~~Av 153 (158)
T PF14676_consen 119 LLPLIKFSPS--LRDSLILVLRKAMF-SRELDARQMAV 153 (158)
T ss_dssp HHHHHTT-HH--HHHHHHHHHHHHTT--SSHHHHHHHH
T ss_pred HHHHHhcCHH--HHHHHHHHHHHHHc-cccHHHHHHHH
Confidence 9988766653 88889999998875 47788887664
No 177
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=79.55 E-value=95 Score=35.14 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=57.9
Q ss_pred HHHhHHHHHhcCCChhh----hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhc-CCC
Q 004132 61 LIRALAVRTMGCIRVDK----ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLIS-DNN 133 (772)
Q Consensus 61 ~iralALrtl~~I~~~e----i~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~-D~d 133 (772)
.|=..-+|.+.+-.... +-..++..+..++.+++|.-|...-..+.++|.+.+..-.. ..+...+.+.+. ...
T Consensus 109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~ 188 (409)
T PF01603_consen 109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETER 188 (409)
T ss_dssp HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCccc
Confidence 34455566666655444 55677777899999999999999999999999988876442 012233333333 566
Q ss_pred hhHHHHHHHHHHHHHhh
Q 004132 134 PMVVANAVAALAEIEEN 150 (772)
Q Consensus 134 ~~Vv~~av~aL~eI~~~ 150 (772)
+..++-.+-.+..|...
T Consensus 189 ~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 189 HNGIAELLEILGSIING 205 (409)
T ss_dssp -STHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHhc
Confidence 77777777777777653
No 178
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=79.43 E-value=1.1e+02 Score=34.80 Aligned_cols=156 Identities=15% Similarity=0.220 Sum_probs=92.2
Q ss_pred cHHHHHHHHHHhhc----CChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhc-----CCCH---HHHHHHHHHHHHhh
Q 004132 159 TSHTLSKLLTALNE----CTEWGQVFILDALSRYKAADAREAENIVERVTPRLQ-----HANC---AVVLSAVKMILQQM 226 (772)
Q Consensus 159 ~~~~~~~Ll~~L~~----~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~-----~~n~---aVv~eaik~i~~~~ 226 (772)
..+.+.+|++.+.. -+|+.--.++|++..+...-..-+..+++.+...++ -+|| =-+||++-+++.+.
T Consensus 24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~ 103 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFV 103 (435)
T ss_dssp HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhc
Confidence 34556666666643 378888888888877654333334555555554442 2344 36899999998863
Q ss_pred hhcCChHHHHHHHHhcccchhhccCCc-hhHHHHHHHHHHHHHhhCh-hhhhhh-cceeeeccCCcHhHHHHHHHHHHHh
Q 004132 227 ELITSTDVVRNLCKKMAPPLVTLLSAE-PEIQYVALRNINLIVQRRP-TILAHE-IKVFFCKYNDPIYVKMEKLEIMIKL 303 (772)
Q Consensus 227 ~~i~~~~~~~~l~~~~~~~L~~Lls~~-~~iryvaL~~l~~i~~~~p-~~~~~~-~~if~~~~~d~~~Ik~~kL~lL~~L 303 (772)
.. .+++.+..+-..+.|++...|..| .|.-=.++..+..++..+| .-+... ...|-++.++.. -
T Consensus 104 ~~-~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~l------------W 170 (435)
T PF03378_consen 104 CE-ADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPAL------------W 170 (435)
T ss_dssp -G-GGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGG------------G
T ss_pred cC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcch------------h
Confidence 21 245656666667888888888655 4555556788888888887 323222 223333333221 1
Q ss_pred cccccHHHHHHHHHHhhhhccHHH
Q 004132 304 ASDRNIDQVLLEFKEYATEVDVDF 327 (772)
Q Consensus 304 ~n~~Nv~~Il~EL~~y~~~~d~~~ 327 (772)
-...|+..+++-|..|++.....+
T Consensus 171 e~~gniPalvrLL~a~i~k~~~~i 194 (435)
T PF03378_consen 171 ERRGNIPALVRLLQAYIKKDPSFI 194 (435)
T ss_dssp GSTTTHHHHHHHHHHHHHHHGGG-
T ss_pred ccCCCcCcHHHHHHHHHHhCchhh
Confidence 256799999999999988766555
No 179
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=79.43 E-value=25 Score=32.97 Aligned_cols=88 Identities=18% Similarity=0.147 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhHH-HHHHHHHhhhCC---CC
Q 004132 26 KKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKITE-YLCDPLQRCLKD---DD 94 (772)
Q Consensus 26 Krl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~---~----~ei~~-~l~~~v~~~L~d---~~ 94 (772)
---+-+.++-.....++-+--++..++|-++++||.++-+||..|-.+. . .+++. .....+.+++.. .+
T Consensus 17 D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~ 96 (133)
T cd03561 17 DWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYD 96 (133)
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCC
Confidence 3344455666666777778888899999999999999999988775542 1 22332 334456777764 47
Q ss_pred hHHHHHHHHHHHHHHhhcc
Q 004132 95 PYVRKTAAICVAKLYDINA 113 (772)
Q Consensus 95 pyVRK~Aa~~l~kl~~~~p 113 (772)
+-||+++...+.......+
T Consensus 97 ~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 97 PKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7888888887777665444
No 180
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=78.62 E-value=1.1e+02 Score=33.85 Aligned_cols=58 Identities=9% Similarity=0.095 Sum_probs=41.2
Q ss_pred HHHHHhhChhhhhhhcc-eeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhh
Q 004132 264 INLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYAT 321 (772)
Q Consensus 264 l~~i~~~~p~~~~~~~~-if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~ 321 (772)
|-+.-...|++-..-+. .|.|-.++|..||+.|+.=|-.+|..++...+.++|...+.
T Consensus 48 ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 48 IPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 33444455654332222 45666889999999999999999999998888877766554
No 181
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=78.17 E-value=1.5e+02 Score=35.02 Aligned_cols=138 Identities=14% Similarity=0.186 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHH-----HHHHHHHHhhccchhHHHHHHHHHHHHHhCcccH-
Q 004132 310 DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERC-----ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY- 383 (772)
Q Consensus 310 ~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~-----vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~- 383 (772)
..+..-|..-+.+.+.-+...+.-+|..+...|.+.-+.+ ||++.+++......+.+.+.-+++++.-+..+..
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 3344444444444333333444456666666665433332 5666666666666666666666666554433221
Q ss_pred ----HHHHHHHHHhcccCChHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCC
Q 004132 384 ----ESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (772)
Q Consensus 384 ----~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~ 455 (772)
..+-......+.+-.++.+.+-+.-++..+ ..+..+.++.+++.|.++-..+-.++ |++.+.|-
T Consensus 498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl---~c~~~~svdfll~~~~~~ld~i~l~l-----k~a~~~pi 565 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL---TCNSRKSVDFLLEKFKDVLDKIDLQL-----KIAIGSPI 565 (678)
T ss_pred HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh---hcCcHHHHHHHHHhhhHHHHHHHHHH-----hhccCCce
Confidence 111111111111113444555555555443 22344555555555554333322222 66665553
No 182
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=77.89 E-value=11 Score=36.84 Aligned_cols=76 Identities=14% Similarity=0.207 Sum_probs=57.7
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc-cccccc--cchHHHHHHhhcCC-ChhHHHHHHHHHHHHHhh
Q 004132 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AELVED--RGFLESLKDLISDN-NPMVVANAVAALAEIEEN 150 (772)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~-p~~~~~--~~~~~~L~~lL~D~-d~~Vv~~av~aL~eI~~~ 150 (772)
.......+..-+.++|.+++++-|.+++.-+..+.+.+ +|.+.. ..|+..+...|+.. .+.+...|+.++..|...
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34456677777999999999999998887777778776 676622 45888888888754 456677888888888754
No 183
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=77.66 E-value=11 Score=36.57 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC
Q 004132 39 SQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR 74 (772)
Q Consensus 39 ~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~ 74 (772)
..|++.-+..+-++.+ + ++.+|--|+|+||-|+
T Consensus 7 ~yP~LL~~L~~iLk~e-~--s~~iR~E~lr~lGilG 39 (160)
T PF11865_consen 7 DYPELLDILLNILKTE-Q--SQSIRREALRVLGILG 39 (160)
T ss_pred HhHHHHHHHHHHHHhC-C--CHHHHHHHHHHhhhcc
Confidence 4688888888888888 3 4899999999999998
No 184
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=77.31 E-value=10 Score=44.20 Aligned_cols=117 Identities=19% Similarity=0.258 Sum_probs=82.2
Q ss_pred CHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHH
Q 004132 59 NPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (772)
Q Consensus 59 np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~ 138 (772)
.+-+-|.|+-+||.=...+|. ...+-..+.=.+|.+||..-+|++-++-.+|+. +.++.|.+...|.|..|..
T Consensus 621 ~~avLgiAliAMgeeig~eM~---lR~f~h~l~yge~~iRravPLal~llsvSNPq~----~vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 621 ELAVLGIALIAMGEEIGSEMV---LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV----NVLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred cchhhhhhhhhhhhhhhhHHH---HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc----hHHHHHHHhccCcchHHHH
Confidence 366778888888874444443 233566777799999999999999999999987 4789999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcccccHHHHHHHHHHh-----hcCChhHHHHHHHHHhccc
Q 004132 139 NAVAALAEIEENSSRPIFEITSHTLSKLLTAL-----NECTEWGQVFILDALSRYK 189 (772)
Q Consensus 139 ~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L-----~~~~ew~qv~iL~~L~~~~ 189 (772)
||+-++.-|..... ...+.++|+.+ ++.+-.--++|.+-|..++
T Consensus 694 naIfamGLiGAGTn-------NARla~mLrqlaSYyyKd~~~Lf~vriAQGL~hlG 742 (878)
T KOG2005|consen 694 NAIFAMGLIGAGTN-------NARLAQMLRQLASYYYKDSKALFVVRIAQGLVHLG 742 (878)
T ss_pred HHHHHhccccCCcc-------hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence 99999877754221 12344444443 2344444455555555444
No 185
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=76.61 E-value=7 Score=35.98 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=38.6
Q ss_pred HHhhh-CCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004132 86 LQRCL-KDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (772)
Q Consensus 86 v~~~L-~d~~pyVRK~Aa~~l~kl~~~~p~~---~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~ 148 (772)
+.++| .+.+|-+---|+.=++.+.+.+|+- +++.+..+.+..|+.+.|+.|...|+.++..+.
T Consensus 48 L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 48 LIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 44555 3346666666666677777777753 333455566677777777777777777776554
No 186
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=76.56 E-value=3.2 Score=34.97 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=35.3
Q ss_pred CCeeEEEEEEEecCCCCccccceeeccCccCccc-CCCCCCCcCCCCCeeeEEEeeeecC
Q 004132 657 DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAA-GGALQVPQLQPGTSGRTLLPMVLFQ 715 (772)
Q Consensus 657 ~~~~~~~~~~tN~~~~~~~~f~~q~n~n~fgl~~-~~~~~~~~l~p~~~~~~~~~l~~~~ 715 (772)
|....+.++++|....++.++.+.++. +-|... ..+..++.|+||++.++.+.+..-.
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 456789999999999999999998776 556551 1122455899999998888876543
No 187
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.25 E-value=15 Score=39.18 Aligned_cols=142 Identities=16% Similarity=0.133 Sum_probs=87.8
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH---HhhcCCChhHHHHHHHHHHHHHhhCCCCcccc
Q 004132 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK---DLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (772)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~---~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l 158 (772)
......+.|.+.++.+.=-+.-.+-++...+||.+.+ .+.+.+. +-+++...+|-.+|+..+.+|.......+...
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~-~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNP-MLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567788888888888888888888888887654 3434333 34567788999999999999876543222222
Q ss_pred cHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhh
Q 004132 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQM 226 (772)
Q Consensus 159 ~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~ 226 (772)
....+..|+..=.+.+-|..--..+.|..... .-....+++.+.+.++|.|+-+...+..++.++.
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~--~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVN--HVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHh--ccChHHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 22223333332233444554444444443321 1223456788888899999988888777766543
No 188
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=75.49 E-value=1.5e+02 Score=35.80 Aligned_cols=329 Identities=16% Similarity=0.149 Sum_probs=155.4
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCC--Ccccc
Q 004132 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR--PIFEI 158 (772)
Q Consensus 84 ~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~---~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~--~~~~l 158 (772)
+.+...|.+.+|.|.-.|+.-+.++..-+-+. +...+=++.|..+|...+..|.-+|+.+|--+...+.. +.+.+
T Consensus 236 pe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai 315 (717)
T KOG1048|consen 236 PEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAI 315 (717)
T ss_pred HHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhh
Confidence 44566777999999988888887776544332 22223368889999999999999999999887654332 22221
Q ss_pred -cHHHHHHHHHHhhc-CChhHHHHHHHHHhccccCCHHH---HHHHHHHH-----hHhh---------cCCCHHHHHHHH
Q 004132 159 -TSHTLSKLLTALNE-CTEWGQVFILDALSRYKAADARE---AENIVERV-----TPRL---------QHANCAVVLSAV 219 (772)
Q Consensus 159 -~~~~~~~Ll~~L~~-~~ew~qv~iL~~L~~~~~~~~~e---~~~il~~v-----~~~L---------~~~n~aVv~eai 219 (772)
...-+..++..|.. -+-=.+..|=.+|-++...|.-. +.+-+..+ .|.. +.....|++.++
T Consensus 316 ~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~t 395 (717)
T KOG1048|consen 316 KELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVT 395 (717)
T ss_pred hhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhh
Confidence 11123333333332 22233344444554443221100 11111111 1111 111245677777
Q ss_pred HHHHHhhhhcCChHHHHHH--HHhcccchhhcc----------CCchhHHHHHHHHHHHHHhh-Chh-h--hhhhcceee
Q 004132 220 KMILQQMELITSTDVVRNL--CKKMAPPLVTLL----------SAEPEIQYVALRNINLIVQR-RPT-I--LAHEIKVFF 283 (772)
Q Consensus 220 k~i~~~~~~i~~~~~~~~l--~~~~~~~L~~Ll----------s~~~~iryvaL~~l~~i~~~-~p~-~--~~~~~~if~ 283 (772)
.|+-++.. ...+..+++ +.-++..|++.+ ++.-|-.-..||++..=+.. -|. . ...+.....
T Consensus 396 gcLRNlSs--~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~ 473 (717)
T KOG1048|consen 396 GCLRNLSS--AGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLP 473 (717)
T ss_pred hhhccccc--hhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccc
Confidence 66654321 022222221 112233333322 12234555566666432221 010 0 000111111
Q ss_pred eccC--Cc---HhHHHHHHHHHHHhc--cc---cc------H-HHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhh-
Q 004132 284 CKYN--DP---IYVKMEKLEIMIKLA--SD---RN------I-DQVLLEFKEYAT-EVDVDFVRKAVRAIGRCAIKLER- 344 (772)
Q Consensus 284 ~~~~--d~---~~Ik~~kL~lL~~L~--n~---~N------v-~~Il~EL~~y~~-~~d~~~~~~~v~aIg~la~k~~~- 344 (772)
+... +. ..-|.+|.+--+.-+ ++ .+ + ..|++--+.|+. .......+.+.-+|-.++.--..
T Consensus 474 ~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~ 553 (717)
T KOG1048|consen 474 GVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTW 553 (717)
T ss_pred cCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcc
Confidence 1111 00 011222200000000 00 00 1 123333233333 23344444554444443321100
Q ss_pred ---------hHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh---CcccHHHHHHHHHHhcccCC-----hHHHHHHHH
Q 004132 345 ---------AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR---YPNTYESIIATLCESLDTLD-----EPEAKASMI 407 (772)
Q Consensus 345 ---------~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~---~p~~~~~ii~~L~~~l~~~~-----~p~a~~~~i 407 (772)
-.+.-+..|++|++...+.|+..+...++++-+. .+..-.+++..|.++|.+-. ..+...+++
T Consensus 554 ~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc 633 (717)
T KOG1048|consen 554 SEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVC 633 (717)
T ss_pred hhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHH
Confidence 1244578899999999999999999999888432 23345677888888885422 234556666
Q ss_pred HHHhhhc
Q 004132 408 WIIGEYA 414 (772)
Q Consensus 408 wilGEy~ 414 (772)
..+-|..
T Consensus 634 ~tl~niv 640 (717)
T KOG1048|consen 634 HTLNNIV 640 (717)
T ss_pred HhHHHHH
Confidence 6666654
No 189
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=75.24 E-value=42 Score=36.38 Aligned_cols=142 Identities=18% Similarity=0.254 Sum_probs=73.5
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCccccc--------HHHHHHHHHHhhcCChhHHHHHHHHHhccccCC
Q 004132 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEIT--------SHTLSKLLTALNECTEWGQVFILDALSRYKAAD 192 (772)
Q Consensus 121 ~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~--------~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~ 192 (772)
|+..|..+ .++..++...+..+.++...++.. .++. ...+..+++.+...+.+.+.....+|+.+....
T Consensus 60 ~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~-~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 60 FLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSR-VELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp --HHHHHH-----HHHHHHHHHHHHHHHH-SSSS-HHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 34444444 467788888888888888776532 1111 114667777777778888877777776554322
Q ss_pred H---HH-HHHHHHHHhHhhc----CCCHHHHHHHHHHHHHhhhhcCChHHHHHHH-Hhcccchhhcc------C--Cchh
Q 004132 193 A---RE-AENIVERVTPRLQ----HANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL------S--AEPE 255 (772)
Q Consensus 193 ~---~e-~~~il~~v~~~L~----~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~-~~~~~~L~~Ll------s--~~~~ 255 (772)
+ .. ..++++.+...++ +.+..+..-|++++..++ ..++....+. .+.++.|..++ + ....
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL---~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL---RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH---TSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh---CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 1 11 1244555554443 344456677777777654 2333322221 23344455555 2 2457
Q ss_pred HHHHHHHHHHHHH
Q 004132 256 IQYVALRNINLIV 268 (772)
Q Consensus 256 iryvaL~~l~~i~ 268 (772)
++|-++-++-.+.
T Consensus 214 l~Y~~ll~lWlLS 226 (312)
T PF03224_consen 214 LQYQALLCLWLLS 226 (312)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877764
No 190
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=74.92 E-value=22 Score=33.64 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=65.2
Q ss_pred HhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hhhhH-----HHHHHHHH
Q 004132 16 NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKIT-----EYLCDPLQ 87 (772)
Q Consensus 16 ~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~---~~ei~-----~~l~~~v~ 87 (772)
+..+....+.---..+.++-..+.+++-+--++..|+|-++++||.++-+||..|-.+. .+.+. ..+...+.
T Consensus 12 kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~ 91 (140)
T PF00790_consen 12 KATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELV 91 (140)
T ss_dssp HHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred HHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHH
Confidence 34444444554455567888888888889999999999999999999999998876542 22222 23566677
Q ss_pred hhhCC--CChH--HHHHHHHHHHHHHhh
Q 004132 88 RCLKD--DDPY--VRKTAAICVAKLYDI 111 (772)
Q Consensus 88 ~~L~d--~~py--VRK~Aa~~l~kl~~~ 111 (772)
+++.+ ..+. ||+++...+......
T Consensus 92 ~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 92 KLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 76665 2233 899988766655443
No 191
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=74.64 E-value=1.3e+02 Score=32.57 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=61.6
Q ss_pred ccHHHHHHHHHHhcccCC-hHHHHHHHHHHHhhhccc----cCCHH---HHHHHHh-hhCC-----------CCCHHHHH
Q 004132 381 NTYESIIATLCESLDTLD-EPEAKASMIWIIGEYAER----IDNAD---ELLESFL-ESFP-----------EEPAQVQL 440 (772)
Q Consensus 381 ~~~~~ii~~L~~~l~~~~-~p~a~~~~iwilGEy~~~----i~~~~---~~L~~l~-~~f~-----------~e~~~vq~ 440 (772)
+.++.+.+.|...+.+-. .+.+|++++.++|=-.-. .+... +.++.+. ..+. ..++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 345566666666664433 455666666666553211 12233 3444221 1111 11356888
Q ss_pred HHHHHHHHHhhcCCCCChHH----HHHHHHHhhhcCCCChHHHhhHHHHHHHh
Q 004132 441 QLLTATVKLFLKKPTEGPQQ----MIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (772)
Q Consensus 441 ~lLta~~Kl~~~~p~~~~~~----~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll 489 (772)
+.|.+..=|....|...... .+..+... . ++.|.+||--|.+-..|+
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~l-L-~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSEL-L-DSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-h-cCCCHHHHHHHHHHHHHH
Confidence 89999998888777521222 23333332 2 578999999999999988
No 192
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.10 E-value=1.7e+02 Score=33.54 Aligned_cols=145 Identities=18% Similarity=0.144 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHH-HHHHhhcCCChhHHHHHHHHHHHHHhhCCC-C
Q 004132 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLE-SLKDLISDNNPMVVANAVAALAEIEENSSR-P 154 (772)
Q Consensus 79 ~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~-~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~-~ 154 (772)
...+...+-.-..|++.-+|.-|+-|++.++...|+.+.. ...++ .+..|..+.|..|+..++.+|.-+.+.-.. .
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~ 335 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD 335 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc
Confidence 3455555666678999999999999999999998887653 12233 445566677889999999888877654221 1
Q ss_pred cccccHHHHHHHHHHhhc-CCh--hHHHHHHHHHhccccCCHHHH--HHHHHHHhHh---hcCCCHHHHHHHHHHHH
Q 004132 155 IFEITSHTLSKLLTALNE-CTE--WGQVFILDALSRYKAADAREA--ENIVERVTPR---LQHANCAVVLSAVKMIL 223 (772)
Q Consensus 155 ~~~l~~~~~~~Ll~~L~~-~~e--w~qv~iL~~L~~~~~~~~~e~--~~il~~v~~~---L~~~n~aVv~eaik~i~ 223 (772)
.-....+...++-+...+ ++. ..-..+...|..|+....++. +.+.....++ +++.|+-|.-+|=-.+.
T Consensus 336 l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 336 LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 111122233333333333 332 234567788888876554443 3355455554 45667765444433333
No 193
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.74 E-value=18 Score=41.61 Aligned_cols=93 Identities=22% Similarity=0.249 Sum_probs=57.0
Q ss_pred HhhcCCCCHHHHhHHHHH-hcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHH-hh
Q 004132 52 VKDSQDPNPLIRALAVRT-MGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD-LI 129 (772)
Q Consensus 52 ~kDl~~~np~iralALrt-l~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~-lL 129 (772)
-...++.+ ..||+++-. |-..+..+++.. .|.+++.|.++..|-..+++++--|--.... +.+..+.. ..
T Consensus 490 a~ETqhe~-i~Rglgig~aLi~ygrqe~add---~I~ell~d~ds~lRy~G~fs~alAy~GTgn~----~vv~~lLh~av 561 (926)
T COG5116 490 AGETQHER-IKRGLGIGFALILYGRQEMADD---YINELLYDKDSILRYNGVFSLALAYVGTGNL----GVVSTLLHYAV 561 (926)
T ss_pred hcchhhhh-HHhhhhhhhhHhhhhhHHHHHH---HHHHHhcCchHHhhhccHHHHHHHHhcCCcc----hhHhhhheeec
Confidence 33444433 667766642 333445666665 3677888888888888877777666432221 22333322 25
Q ss_pred cCCChhHHHHHHHHHHHHHhhCC
Q 004132 130 SDNNPMVVANAVAALAEIEENSS 152 (772)
Q Consensus 130 ~D~d~~Vv~~av~aL~eI~~~~~ 152 (772)
+|.|--|..+|+.||.-+|-.++
T Consensus 562 sD~nDDVrRAAViAlGfvc~~D~ 584 (926)
T COG5116 562 SDGNDDVRRAAVIALGFVCCDDR 584 (926)
T ss_pred ccCchHHHHHHHHheeeeEecCc
Confidence 78888888888888887776554
No 194
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=73.33 E-value=5 Score=44.68 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcC---CCCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 004132 44 AILAVNTFVKDSQ---DPNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICV 105 (772)
Q Consensus 44 ~lL~iNtl~kDl~---~~np~iralALrtl~~I~---~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l 105 (772)
.-...+.+.-||+ +..|.+||-|++++...| .++....+.+.+.++|.+++.-|+.-||.|+
T Consensus 303 ~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 3334455555665 567888888888877765 4566777788888888888888888888775
No 195
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=72.89 E-value=2.2e+02 Score=34.38 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCC
Q 004132 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (772)
Q Consensus 80 ~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~ 152 (772)
...+..|..+..|+=+.||+.|+-.++-+..--||.-. .++-.+..-|.|.+.-+.+.|...|..+....|
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~--~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN--NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 34455566777889999999999999999988888644 366777777889999999999999988876654
No 196
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=72.81 E-value=44 Score=31.40 Aligned_cols=90 Identities=21% Similarity=0.194 Sum_probs=64.4
Q ss_pred CcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhH-HHHHHHHHhhhCCC
Q 004132 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKIT-EYLCDPLQRCLKDD 93 (772)
Q Consensus 22 ~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~---~----~ei~-~~l~~~v~~~L~d~ 93 (772)
..+.---.-+.++-....+++-+.-++..++|-++++||.+.-+||..|-.+. . .+++ ..+...+.+++.++
T Consensus 13 l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~ 92 (133)
T smart00288 13 LLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPK 92 (133)
T ss_pred CCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCC
Confidence 33344444567777788888888999999999999999999999999886542 1 2232 33566777777773
Q ss_pred --ChHHHHHHHHHHHHHHhh
Q 004132 94 --DPYVRKTAAICVAKLYDI 111 (772)
Q Consensus 94 --~pyVRK~Aa~~l~kl~~~ 111 (772)
.+.||+++...+..-+..
T Consensus 93 ~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 93 YPLPLVKKRILELIQEWADA 112 (133)
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 344899988877766543
No 197
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=72.54 E-value=7.9 Score=38.59 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=53.5
Q ss_pred HhhcCCCCHHHHhHHHHHhcCCChh-hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc
Q 004132 52 VKDSQDPNPLIRALAVRTMGCIRVD-KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED 118 (772)
Q Consensus 52 ~kDl~~~np~iralALrtl~~I~~~-ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~ 118 (772)
.+=..|.|+..|-.|+-++...... .-.+.+...+..++.|.+.||||..+-++..++..+|+.+.+
T Consensus 111 ~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~ 178 (197)
T cd06561 111 EEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIA 178 (197)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 3334678898888877777664443 566777888999999999999999999999999999987653
No 198
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=72.50 E-value=7 Score=28.35 Aligned_cols=28 Identities=36% Similarity=0.417 Sum_probs=23.3
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHH
Q 004132 82 LCDPLQRCLKDDDPYVRKTAAICVAKLY 109 (772)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~Aa~~l~kl~ 109 (772)
.++.+.++|.+.++.||+.|+.|+..+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4677888899999999999998887764
No 199
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.67 E-value=2e+02 Score=33.40 Aligned_cols=100 Identities=18% Similarity=0.357 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc-cc-hhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCC-hHHH
Q 004132 326 DFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK-VN-YVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD-EPEA 402 (772)
Q Consensus 326 ~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~-~~-~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~-~p~a 402 (772)
+||.+++..+..++--+.+ ..|+..+..-++.+ .. ..++.++..++.+..+.+.-...+++.+.+.+-.+. ....
T Consensus 367 ~fR~~v~dvl~Dv~~iigs--~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q~~~ 444 (559)
T KOG2081|consen 367 EFRLKVGDVLKDVAFIIGS--DECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQAPL 444 (559)
T ss_pred HHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccchhH
Confidence 5677777777666655433 35666666655552 22 345555566777766655444455555555553333 2227
Q ss_pred HHHHHHHHhhhccccCCHHHHHHHH
Q 004132 403 KASMIWIIGEYAERIDNADELLESF 427 (772)
Q Consensus 403 ~~~~iwilGEy~~~i~~~~~~L~~l 427 (772)
+...+-++|||.+-++..++.++..
T Consensus 445 ~~ts~ll~g~~~ew~~~~p~~le~v 469 (559)
T KOG2081|consen 445 RYTSILLLGEYSEWVEQHPELLEPV 469 (559)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 7888999999999887655554433
No 200
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=71.65 E-value=46 Score=31.71 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=55.7
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC----h---hhhH-HHHHHHHHhhhC-CCChHHHH
Q 004132 29 VYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR----V---DKIT-EYLCDPLQRCLK-DDDPYVRK 99 (772)
Q Consensus 29 ~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~----~---~ei~-~~l~~~v~~~L~-d~~pyVRK 99 (772)
.-+.++-..+.+++-.--++..++|-++++||.++-+||..|-.+. . .+++ ..+...+.+++. ..++-||+
T Consensus 24 ~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~ 103 (142)
T cd03569 24 SILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQ 103 (142)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHH
Confidence 3345666666667777888899999999999999999997664431 1 1122 344555666665 47778888
Q ss_pred HHHHHHHHHHh
Q 004132 100 TAAICVAKLYD 110 (772)
Q Consensus 100 ~Aa~~l~kl~~ 110 (772)
+++..+..-..
T Consensus 104 kil~li~~W~~ 114 (142)
T cd03569 104 KILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHH
Confidence 87777665543
No 201
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=71.22 E-value=3.5e+02 Score=35.89 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=71.2
Q ss_pred HHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-C-CchhHHHHHHHHHHHHHhhChhhhh
Q 004132 199 IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-S-AEPEIQYVALRNINLIVQRRPTILA 276 (772)
Q Consensus 199 il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s-~~~~iryvaL~~l~~i~~~~p~~~~ 276 (772)
++.....++++.++.|+-=+...+..++... ....++ .+++.|++.+ + ++.|+- .||..+..++..+|+.+.
T Consensus 436 iL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f--ds~~qq---eVv~~Lvthi~sg~~~ev~-~aL~vL~~L~~~~~~~l~ 509 (1426)
T PF14631_consen 436 ILSLAQSLLRSKEPSVREFGSHLYKYLFKEF--DSYCQQ---EVVGALVTHIGSGNSQEVD-AALDVLCELAEKNPSELQ 509 (1426)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS---HHHHH---HHHHHHHHHHHH--HHHHH-HHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc--cchhHH---HHHHHHHHHHcCCcHHHHH-HHHHHHHHHHhccHHHHH
Confidence 4445556677777776544444443333222 233332 4566677776 4 466775 889999999999998877
Q ss_pred hhc----ceeeeccC-CcHhHHHHHHHHHHHhcc--cccHHHHHHHH----HHhhhhccHHHHHH
Q 004132 277 HEI----KVFFCKYN-DPIYVKMEKLEIMIKLAS--DRNIDQVLLEF----KEYATEVDVDFVRK 330 (772)
Q Consensus 277 ~~~----~if~~~~~-d~~~Ik~~kL~lL~~L~n--~~Nv~~Il~EL----~~y~~~~d~~~~~~ 330 (772)
++. .++.++.+ ....||+. .++|..|+- ..+-..|-+|| ..++...+..+++.
T Consensus 510 ~fa~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~ 573 (1426)
T PF14631_consen 510 PFATFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRI 573 (1426)
T ss_dssp HTHHHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHH
Confidence 653 24555543 23456544 788888872 22234555554 35666777777664
No 202
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=70.92 E-value=2e+02 Score=33.07 Aligned_cols=54 Identities=9% Similarity=-0.071 Sum_probs=33.5
Q ss_pred HHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhCCC-ChHHHHHHHHHHHHHHhhccc
Q 004132 61 LIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAE 114 (772)
Q Consensus 61 ~iralALrtl~~I~---~~ei~~~l~~~v~~~L~d~-~pyVRK~Aa~~l~kl~~~~p~ 114 (772)
-.|.-|++.++..- .-+-++.+-...+.++.+. .+.+|+.|..-+..+.+..-+
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~ 62 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDS 62 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccc
Confidence 34666666666531 1144455666677888775 446888888777777765443
No 203
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=70.75 E-value=20 Score=42.26 Aligned_cols=175 Identities=18% Similarity=0.174 Sum_probs=111.7
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCC----ChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh-ccccccccch
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRTMGCI----RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVEDRGF 121 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrtl~~I----~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~-~p~~~~~~~~ 121 (772)
++-.+.|-+..++..||.+=|+-+-.. ..+.+-..++|.+..++.|.|+.+|-.++.++.-+..+ ++..+ ..++
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L-n~El 409 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL-NGEL 409 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh-cHHH
Confidence 456677888889999998888766543 33445567889999999999999999999988887643 33322 2235
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC-cccccHHHHHHHHHHhhcCC-h--hHHHHHHHHHhccccCCHHHHH
Q 004132 122 LESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECT-E--WGQVFILDALSRYKAADAREAE 197 (772)
Q Consensus 122 ~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~-~~~l~~~~~~~Ll~~L~~~~-e--w~qv~iL~~L~~~~~~~~~e~~ 197 (772)
...+.++-.|.+++.+.+....+.+|....... +-.++ .....+.++++= | -.-+..+.....|-+ ..+-+.
T Consensus 410 lr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL---~~aftralkdpf~paR~a~v~~l~at~~~~~-~~~va~ 485 (690)
T KOG1243|consen 410 LRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVL---ASAFTRALKDPFVPARKAGVLALAATQEYFD-QSEVAN 485 (690)
T ss_pred HHHHHhhCccccCcccccceeeecccccccchhhhcccc---chhhhhhhcCCCCCchhhhhHHHhhcccccc-hhhhhh
Confidence 666666667999999999988888887653211 11111 222333444321 1 122333444445533 344566
Q ss_pred HHHHHHhHhhcCCCHHHHHHHHHHHHHhh
Q 004132 198 NIVERVTPRLQHANCAVVLSAVKMILQQM 226 (772)
Q Consensus 198 ~il~~v~~~L~~~n~aVv~eaik~i~~~~ 226 (772)
.|+..+.+..-..+..|+-.|-+++-.++
T Consensus 486 kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 486 KILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred hccccccccccCcccchhhHHHHHHHHHH
Confidence 67777777777777777766666665543
No 204
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=70.50 E-value=33 Score=38.21 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=72.1
Q ss_pred HHhhhCCCChHHHHHHHHHHH-HHHhhccccccccchHHHHHHhhc------CCChhHHHHHHHHHHHHHhhCCC-----
Q 004132 86 LQRCLKDDDPYVRKTAAICVA-KLYDINAELVEDRGFLESLKDLIS------DNNPMVVANAVAALAEIEENSSR----- 153 (772)
Q Consensus 86 v~~~L~d~~pyVRK~Aa~~l~-kl~~~~p~~~~~~~~~~~L~~lL~------D~d~~Vv~~av~aL~eI~~~~~~----- 153 (772)
|++-+..++.+-||+||.-+. .+.+..++.+.. -+...+..+|. ..|+.-.-.|+.++..++.....
T Consensus 215 Irrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~-i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gv 293 (370)
T PF08506_consen 215 IRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTS-ILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGV 293 (370)
T ss_dssp HHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-
T ss_pred HHhhccccccCCcHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCc
Confidence 444444344444555665555 455555554432 23455666665 34555566788888777754311
Q ss_pred ----CcccccHHHHHHHHHHhh---cCChhHHHHHHHHHhccccC-CHHHHHHHHHHHhHhhcCCCHHHHHHHHHH
Q 004132 154 ----PIFEITSHTLSKLLTALN---ECTEWGQVFILDALSRYKAA-DAREAENIVERVTPRLQHANCAVVLSAVKM 221 (772)
Q Consensus 154 ----~~~~l~~~~~~~Ll~~L~---~~~ew~qv~iL~~L~~~~~~-~~~e~~~il~~v~~~L~~~n~aVv~eaik~ 221 (772)
..+++..=--.+++-.|. ...||++...++.+..|... +.+....+++.+...|++.+..|---|+.+
T Consensus 294 t~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 294 TQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 011111000111122222 46799999999999988644 345667788888899988887766555544
No 205
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=70.34 E-value=33 Score=32.82 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=59.0
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhhH-HHHHHHHHhhhCC-CChHHHHH
Q 004132 30 YLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKIT-EYLCDPLQRCLKD-DDPYVRKT 100 (772)
Q Consensus 30 YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~---~----~ei~-~~l~~~v~~~L~d-~~pyVRK~ 100 (772)
-+-++-....+++-+--++..++|=++++||.+.-+||..|-.+. . .+++ +.+...+.+++.+ .++-||.+
T Consensus 21 il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~k 100 (144)
T cd03568 21 ILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEK 100 (144)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHH
Confidence 345666666777778889999999999999999999998775442 1 1222 4556667888877 78888888
Q ss_pred HHHHHHHHHh
Q 004132 101 AAICVAKLYD 110 (772)
Q Consensus 101 Aa~~l~kl~~ 110 (772)
+...+.....
T Consensus 101 il~li~~W~~ 110 (144)
T cd03568 101 LREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHH
Confidence 8777665543
No 206
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=69.62 E-value=1.3e+02 Score=32.23 Aligned_cols=222 Identities=13% Similarity=0.139 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhc--CChhHHHHHHHHHhccccCCHHHHHHHHHHHhHh-hcCCCHHHHHHHHHHHHHhhhhcC--ChHH-
Q 004132 161 HTLSKLLTALNE--CTEWGQVFILDALSRYKAADAREAENIVERVTPR-LQHANCAVVLSAVKMILQQMELIT--STDV- 234 (772)
Q Consensus 161 ~~~~~Ll~~L~~--~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~-L~~~n~aVv~eaik~i~~~~~~i~--~~~~- 234 (772)
....+|+..|.. .++-.+..+++=+-.+.....-.....++.+... -+..+..|...++..+-.+...+. ++..
T Consensus 19 ~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~ 98 (324)
T PF11838_consen 19 ENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQ 98 (324)
T ss_dssp THHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 345555555543 3555566655544444333223334445555544 345566666666655544332222 1221
Q ss_pred --HHHHHHhcccchhhccC---C---chhHHHHHHHHHHHHHhhChhhhhhhcceee--e-c--c---CCcHhHHHHHHH
Q 004132 235 --VRNLCKKMAPPLVTLLS---A---EPEIQYVALRNINLIVQRRPTILAHEIKVFF--C-K--Y---NDPIYVKMEKLE 298 (772)
Q Consensus 235 --~~~l~~~~~~~L~~Lls---~---~~~iryvaL~~l~~i~~~~p~~~~~~~~if~--~-~--~---~d~~~Ik~~kL~ 298 (772)
++.+..++..++..-+. . +...+.+--..+...+ .+++....-.+.|. . . . .-|+.+|...+-
T Consensus 99 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~-~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~ 177 (324)
T PF11838_consen 99 EAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC-GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYC 177 (324)
T ss_dssp HHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHH
Confidence 23333344444443332 1 1112221111122222 33332221111110 0 0 1 224566666666
Q ss_pred HHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Q 004132 299 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (772)
Q Consensus 299 lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~ 378 (772)
...+-++++-++.+.+. |..+.+.+.++.++.++|..- ..+.+..+++++-.....-.+++..++..+...
T Consensus 178 ~~~~~g~~~~~~~l~~~---~~~~~~~~~k~~~l~aLa~~~------d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~ 248 (324)
T PF11838_consen 178 AGVRNGDEEEWDFLWEL---YKNSTSPEEKRRLLSALACSP------DPELLKRLLDLLLSNDKVRSQDIRYVLAGLASS 248 (324)
T ss_dssp HHTTS--HHHHHHHHHH---HHTTSTHHHHHHHHHHHTT-S-------HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-C
T ss_pred HHHHHhhHhhHHHHHHH---HhccCCHHHHHHHHHhhhccC------CHHHHHHHHHHHcCCcccccHHHHHHHHHHhcC
Confidence 65555554444444433 444556777777777765321 123444444444443223334444444444435
Q ss_pred CcccHHHHHHHHHH
Q 004132 379 YPNTYESIIATLCE 392 (772)
Q Consensus 379 ~p~~~~~ii~~L~~ 392 (772)
.|..+..+...+.+
T Consensus 249 ~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 249 NPVGRDLAWEFFKE 262 (324)
T ss_dssp STTCHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHH
Confidence 55544444444433
No 207
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=69.57 E-value=6.1 Score=28.67 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=27.9
Q ss_pred ccchHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004132 118 DRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (772)
Q Consensus 118 ~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~ 148 (772)
+.|.++.|.+||.+.|+.|+.+|+.+|..|+
T Consensus 10 ~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 10 EAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999998875
No 208
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.72 E-value=1.6e+02 Score=36.01 Aligned_cols=174 Identities=18% Similarity=0.195 Sum_probs=110.2
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHH
Q 004132 312 VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER----AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESII 387 (772)
Q Consensus 312 Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~----~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii 387 (772)
.++|-..++.+.-+.++..+++.+..++++-.+ .-+..+++.++.++....||-=.+|..+.-+...||+ .++
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e---~il 804 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE---DIL 804 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch---hhH
Confidence 466777778777788888999999999984222 2357899999999999999998888876677777885 567
Q ss_pred HHHHHhcc-cCC---------hHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCC---
Q 004132 388 ATLCESLD-TLD---------EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKP--- 454 (772)
Q Consensus 388 ~~L~~~l~-~~~---------~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p--- 454 (772)
+.+.+... .-. -.+|.--++--.||-.... -.-++..|+....+-+.+-|+..+..+.-+.-...
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y--~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY--KAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH--HHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 77777432 111 1222222233333322111 12344555555553344557777776666543322
Q ss_pred CCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcC
Q 004132 455 TEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (772)
Q Consensus 455 ~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~ 491 (772)
++..-+.++.++...+.| ..+-+|.-|.-..+.+-.
T Consensus 883 sd~~~ev~~~Il~l~~~d-~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 883 SDFFHEVLQLILSLETTD-GSVLVRRAAVHLLAELLN 918 (982)
T ss_pred hHHHHHHHHHHHHHHccC-CchhhHHHHHHHHHHHHh
Confidence 222556677777776654 778888888877776644
No 209
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=68.62 E-value=5.9 Score=29.30 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=19.7
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHH
Q 004132 81 YLCDPLQRCLKDDDPYVRKTAAIC 104 (772)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~Aa~~ 104 (772)
.+...|.+.+.|++|-||++|+..
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 566678899999999999988753
No 210
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=68.61 E-value=12 Score=36.71 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=46.1
Q ss_pred CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCC
Q 004132 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (772)
Q Consensus 92 d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~ 152 (772)
|.---+||.|..|++.+.....+.+....|.+.+..-|.| ++.+..-+...+..++...|
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p 97 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAP 97 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-H
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCH
Confidence 3445799999999999999888877766788999999999 88887777777777765543
No 211
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=68.54 E-value=39 Score=33.60 Aligned_cols=89 Identities=21% Similarity=0.255 Sum_probs=57.5
Q ss_pred HHHHHHHhhhCC-CChHHHHHHHHHHHHHHhh-ccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcc
Q 004132 81 YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDI-NAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (772)
Q Consensus 81 ~l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~-~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~ 156 (772)
.+.|-....|.. .+|| |--|..++..+.+. .++.+-. ++++..|+..|+.+|+.|+.+++.+|..+...++.- =
T Consensus 38 ~~Lpif~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v-G 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV-G 115 (183)
T ss_pred hHHHHHHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh-h
Confidence 445556666666 5555 57777788888777 5543321 346677889999999999999999998885443211 0
Q ss_pred cccHHHHHHHHHHhh
Q 004132 157 EITSHTLSKLLTALN 171 (772)
Q Consensus 157 ~l~~~~~~~Ll~~L~ 171 (772)
+-..+.+++|+..++
T Consensus 116 ~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 116 EALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHHHH
Confidence 223445666665543
No 212
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=68.41 E-value=1.9e+02 Score=31.67 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=71.1
Q ss_pred HHHhHHHHHhcCCChhhhHHHHHHHHHhhhC-CCChHHHHHHHHHHHHHHhhc-cccccccchHHHHHHhhcCCChhHHH
Q 004132 61 LIRALAVRTMGCIRVDKITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVA 138 (772)
Q Consensus 61 ~iralALrtl~~I~~~ei~~~l~~~v~~~L~-d~~pyVRK~Aa~~l~kl~~~~-p~~~~~~~~~~~L~~lL~D~d~~Vv~ 138 (772)
..|.+..+.|+.+....+...++..+..++. +.|.-+...++.++.+-+... .+.-+ .+++.+.+-+.|+.+.|+.
T Consensus 2 d~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~--~~~~~~~kGl~~kk~~vR~ 79 (339)
T PF12074_consen 2 DQRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPK--KVVDAFKKGLKDKKPPVRR 79 (339)
T ss_pred cHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCH--HHHHHHHHHhcCCCCcHHH
Confidence 4577777777777764455555555555554 488888888888888766555 33322 4788999999999998988
Q ss_pred HHHHHHHHHHhhCC-CCcccccHHHHHHHHHHhh
Q 004132 139 NAVAALAEIEENSS-RPIFEITSHTLSKLLTALN 171 (772)
Q Consensus 139 ~av~aL~eI~~~~~-~~~~~l~~~~~~~Ll~~L~ 171 (772)
.-+..+.++....+ .....+..+.+..|++.++
T Consensus 80 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 80 AWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLK 113 (339)
T ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHH
Confidence 88888887765111 1112333344555555553
No 213
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.05 E-value=3.1e+02 Score=34.12 Aligned_cols=176 Identities=22% Similarity=0.299 Sum_probs=98.1
Q ss_pred hhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh-cCCChhHH--HHHHHHHHHHHhhCC-----CCcccc-
Q 004132 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI-SDNNPMVV--ANAVAALAEIEENSS-----RPIFEI- 158 (772)
Q Consensus 88 ~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL-~D~d~~Vv--~~av~aL~eI~~~~~-----~~~~~l- 158 (772)
++--|++|-+||+|=.-+-.+.+ -| ||+..|.+.+ +|..+..+ ++|+..=.-|.++=+ +.-+.+
T Consensus 11 ~~T~d~d~~~R~~AE~~L~q~~K-~p------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~ 83 (1010)
T KOG1991|consen 11 RATIDSDAKERKAAEQQLNQLEK-QP------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIP 83 (1010)
T ss_pred HHhcCCChHHHHHHHHHHHHhhc-CC------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCC
Confidence 34446779999988776665543 34 5777666654 56666663 344443344443211 100111
Q ss_pred --cHHHH-HHHHHHhhcCChhHHHHHHHHHhccccCC-HHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcC---C
Q 004132 159 --TSHTL-SKLLTALNECTEWGQVFILDALSRYKAAD-AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT---S 231 (772)
Q Consensus 159 --~~~~~-~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~-~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~---~ 231 (772)
.+..+ .+++..+....+-.++.+-.+|......| ++.--.+++.+...|++.+.+.+|.+.-|+..+...-+ +
T Consensus 84 e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~ 163 (1010)
T KOG1991|consen 84 EEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKD 163 (1010)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccc
Confidence 12222 24555555667777777766664332222 23345677888889999999999999988876543211 1
Q ss_pred --hHHHHHHHHhcccch----hhccCC----chhHHHHHHHHHHHHHhh
Q 004132 232 --TDVVRNLCKKMAPPL----VTLLSA----EPEIQYVALRNINLIVQR 270 (772)
Q Consensus 232 --~~~~~~l~~~~~~~L----~~Lls~----~~~iryvaL~~l~~i~~~ 270 (772)
..-+..+.....|.+ ..+++. ..++++..|+.....++.
T Consensus 164 eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~ 212 (1010)
T KOG1991|consen 164 EERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY 212 (1010)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 111222222233332 345532 357888888877766654
No 214
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=67.34 E-value=93 Score=35.66 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=39.6
Q ss_pred cCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHH-hcccchhhccC-C-----chhHHHHHHHHHHHHHhhCh
Q 004132 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-A-----EPEIQYVALRNINLIVQRRP 272 (772)
Q Consensus 208 ~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~-~~~~~L~~Lls-~-----~~~iryvaL~~l~~i~~~~p 272 (772)
...+..|..||.||+.+.+ +.++.+.+.+.. .....++..++ . ++++.|+.+|.+-.+....+
T Consensus 42 ~~~~~~v~~EALKCL~N~l--f~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~ 111 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNAL--FLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRP 111 (446)
T ss_pred cCCChHHHHHHHHHHHHHH--hCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCh
Confidence 3446789999999999864 334544332221 22233444443 2 67999999999987765544
No 215
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=67.29 E-value=1e+02 Score=29.43 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=53.2
Q ss_pred ccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhh-ccHHH
Q 004132 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATE-VDVDF 327 (772)
Q Consensus 249 Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~-~d~~~ 327 (772)
+.+++|++++.||..+..+++.-...|..++. .++ .++||...+.. .+..+
T Consensus 46 l~~~n~~v~l~AL~LLe~~vkNCG~~fh~eva------------sk~----------------Fl~eL~kl~~~~~~~~V 97 (144)
T cd03568 46 LNHKDPNVQLRALTLLDACAENCGKRFHQEVA------------SRD----------------FTQELKKLINDRVHPTV 97 (144)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHh------------hHH----------------HHHHHHHHhcccCCHHH
Confidence 44678999999999999998877665554321 222 33333333333 57788
Q ss_pred HHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhcc
Q 004132 328 VRKAVRAIGRCAIKLERAAE-RCISVLLELIKIKV 361 (772)
Q Consensus 328 ~~~~v~aIg~la~k~~~~~~-~~vd~Ll~ll~~~~ 361 (772)
+.++..-|..|+..|....+ .++..+.+.|+..|
T Consensus 98 k~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~~G 132 (144)
T cd03568 98 KEKLREVVKQWADEFKNDPSLSLMSDLYKKLKNEG 132 (144)
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHcC
Confidence 88888888888888764332 23444444444444
No 216
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=66.56 E-value=38 Score=41.27 Aligned_cols=192 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCc-------------ccccHHHHHHHH
Q 004132 101 AAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI-------------FEITSHTLSKLL 167 (772)
Q Consensus 101 Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~-------------~~l~~~~~~~Ll 167 (772)
|...=+.+.|.+|+..+ +...+.++|++ |.+-..|..++.-|...++.-. .++....+..|.
T Consensus 799 ~Wv~KaLl~R~~~~s~~---ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~ 873 (1030)
T KOG1967|consen 799 AWVTKALLLRNHPESSE---IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILV 873 (1030)
T ss_pred HHHHHHHHHcCCcccch---HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHH
Q ss_pred HHhhcCChhHHHHHHHHHhccccCCH-----HHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhc
Q 004132 168 TALNECTEWGQVFILDALSRYKAADA-----REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKM 242 (772)
Q Consensus 168 ~~L~~~~ew~qv~iL~~L~~~~~~~~-----~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~ 242 (772)
..+...+--.+...+.+|......-+ .+...++..+...|.-.+..|..++.++|-..+.. .+.....-...+
T Consensus 874 ~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~--~~tL~t~~~~Tl 951 (1030)
T KOG1967|consen 874 SKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE--SETLQTEHLSTL 951 (1030)
T ss_pred HHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh--ccccchHHHhHH
Q ss_pred ccchhhccCCchh----HHHHHHHHHHHHHhhCh----hhhhhhc--ceeeeccCCcHhHHHHHHHH
Q 004132 243 APPLVTLLSAEPE----IQYVALRNINLIVQRRP----TILAHEI--KVFFCKYNDPIYVKMEKLEI 299 (772)
Q Consensus 243 ~~~L~~Lls~~~~----iryvaL~~l~~i~~~~p----~~~~~~~--~if~~~~~d~~~Ik~~kL~l 299 (772)
+|.+..+-++..| +|-.||+.+..+..+-| ..+++.+ .+.-|+.|.-.-||.+|.+.
T Consensus 952 vp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 952 VPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
No 217
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=66.41 E-value=52 Score=35.62 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=75.8
Q ss_pred CHHHHhHHHHHhcCC-ChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHH
Q 004132 59 NPLIRALAVRTMGCI-RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVV 137 (772)
Q Consensus 59 np~iralALrtl~~I-~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv 137 (772)
.+....+-++.|..+ ..+++.+|+..-+-.++.+... |........ ...++. -|.+.++ ++...|..+.
T Consensus 53 ~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~--~~~~~~~~~---~~~~~~----~~~~fl~-ll~~~D~~i~ 122 (312)
T PF03224_consen 53 GDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPS--RVELFLELA---KQDDSD----PYSPFLK-LLDRNDSFIQ 122 (312)
T ss_dssp ---------HHHHHH---HHHHHHHHHHHHHHHH-SSS--SHHHHHHHH---H-TTH------HHHHHH-H-S-SSHHHH
T ss_pred hhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHH--HHHHHHHhc---ccccch----hHHHHHH-HhcCCCHHHH
Confidence 345556666777777 7888888888888887776552 233322222 222221 1545555 8888899999
Q ss_pred HHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhc----CChhHHHHHHHHHhccccCCH-HHH---HHHHHHHhHhh--
Q 004132 138 ANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE----CTEWGQVFILDALSRYKAADA-REA---ENIVERVTPRL-- 207 (772)
Q Consensus 138 ~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~----~~ew~qv~iL~~L~~~~~~~~-~e~---~~il~~v~~~L-- 207 (772)
.-|...+..+...++........+.+.++++.+.. .+.=.|-..+++|+.+...+. +.. ...+..+.+.+
T Consensus 123 ~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~ 202 (312)
T PF03224_consen 123 LKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRK 202 (312)
T ss_dssp HHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHh
Confidence 99988888887665432222113455666665543 111123444555555432211 110 23445555555
Q ss_pred -----cCCCHHHHHHHHHHHHHh
Q 004132 208 -----QHANCAVVLSAVKMILQQ 225 (772)
Q Consensus 208 -----~~~n~aVv~eaik~i~~~ 225 (772)
...+.=+.|+++-|+-.+
T Consensus 203 ~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 203 QATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp --------HHHHHHHHHHHHHHH
T ss_pred hcccCCCCchhHHHHHHHHHHHH
Confidence 123345788888877643
No 218
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=66.31 E-value=1.2e+02 Score=32.47 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccc----cccchH----HHHHHhhc--------CCChhHHH
Q 004132 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELV----EDRGFL----ESLKDLIS--------DNNPMVVA 138 (772)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~----~~~~~~----~~L~~lL~--------D~d~~Vv~ 138 (772)
..+...-+.|++..++.|.++.+|..++.|+.++....|... ...|+. +.|..+|. +....++.
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~ 192 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQ 192 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHH
Confidence 445567789999999999999999999999999998766433 333333 34444444 55555555
Q ss_pred HHHHHHHHHH
Q 004132 139 NAVAALAEIE 148 (772)
Q Consensus 139 ~av~aL~eI~ 148 (772)
.|..++..+.
T Consensus 193 ~ay~~L~~L~ 202 (282)
T PF10521_consen 193 AAYPALLSLL 202 (282)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 219
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.83 E-value=34 Score=36.65 Aligned_cols=60 Identities=28% Similarity=0.303 Sum_probs=38.1
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCChh------hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHh
Q 004132 49 NTFVKDSQDPNPLIRALAVRTMGCIRVD------KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYD 110 (772)
Q Consensus 49 Ntl~kDl~~~np~iralALrtl~~I~~~------ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~ 110 (772)
+.+.+-+.+.||.+|..|++.+..+... .--+..++.|.+++++..+ -.-|+.++.++.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq 71 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ 71 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh
Confidence 3455666777788888887766665433 1124556667777777776 5566666666664
No 220
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.93 E-value=6.4e+02 Score=36.23 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=46.4
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhh----------------------HHHHHHHHHhhhCCCChHHHHHHHH
Q 004132 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKI----------------------TEYLCDPLQRCLKDDDPYVRKTAAI 103 (772)
Q Consensus 46 L~iNtl~kDl~~~np~iralALrtl~~I~~~ei----------------------~~~l~~~v~~~L~d~~pyVRK~Aa~ 103 (772)
++.-+..||+.|.+...-..++|-.+.++.... .-.+++.|..++.+.++-+|+....
T Consensus 927 ~~~a~~~~elr~~a~~~~~~il~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~ 1006 (3550)
T KOG0889|consen 927 LFYATSCKELRDEAQDFLEAILRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVR 1006 (3550)
T ss_pred HHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHH
Confidence 444456788888887777777776665543311 1345778888888888889988888
Q ss_pred HHHHHHhh
Q 004132 104 CVAKLYDI 111 (772)
Q Consensus 104 ~l~kl~~~ 111 (772)
|+..++..
T Consensus 1007 ~l~~i~~~ 1014 (3550)
T KOG0889|consen 1007 ALKVIFST 1014 (3550)
T ss_pred HHHHHHHH
Confidence 88888754
No 221
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=63.91 E-value=8.2 Score=25.89 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=18.6
Q ss_pred HHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC
Q 004132 61 LIRALAVRTMGCIRVDKITEYLCDPLQRCLKD 92 (772)
Q Consensus 61 ~iralALrtl~~I~~~ei~~~l~~~v~~~L~d 92 (772)
.+|..|..+||.++.++..+. +.+++.|
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~----L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPA----LIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHH----HHHHhcC
Confidence 567778888888877666655 4444444
No 222
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=60.73 E-value=3.1e+02 Score=32.86 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=96.3
Q ss_pred ccchhHHHHHh---hcCCCcchHHHHHHHHHHhccCCCc--HHHHHHHHHHhhcCCCC--HHHHhHHHHHhcCCChhhhH
Q 004132 7 VSSLFTDVVNC---MQTENLELKKLVYLYLINYAKSQPD--LAILAVNTFVKDSQDPN--PLIRALAVRTMGCIRVDKIT 79 (772)
Q Consensus 7 vs~lf~~vi~l---~~s~~~~lKrl~YL~l~~~~~~~~d--l~lL~iNtl~kDl~~~n--p~iralALrtl~~I~~~ei~ 79 (772)
.+.-|.++... +..++.+.|+=-+-.+..-.+.-|| .+..+.+-+..++.-.+ ..+.-..+..--.+..++..
T Consensus 249 f~n~fvd~~~fLeel~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq 328 (690)
T KOG1243|consen 249 FRNDFVDTLLFLEELRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQ 328 (690)
T ss_pred ccchHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccc
Confidence 34455666554 3456777777777777776666665 23334444455554332 34444555555555667777
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh-ccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 004132 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (772)
Q Consensus 80 ~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~-~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~ 149 (772)
..+.|.|.++....+--||-.-..-+-+.... .++.+.+ ...+.+...+.|+|+.++..++..+..+..
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d-~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILND-QIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcc-hhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 88899999999999999998877777766654 3444443 677888889999999999999988877754
No 223
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=60.06 E-value=45 Score=29.91 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCCCCChHHH------HHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHHHHHhhhcc
Q 004132 439 QLQLLTATVKLFLKKPTEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLA 502 (772)
Q Consensus 439 q~~lLta~~Kl~~~~p~~~~~~~------v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~~~~~~~~ivl~ 502 (772)
|..++..++-+..+.+. .++. +.-+|+.|..|..||-+|++|.+-.|-|-.+.+..+++|..
T Consensus 3 K~~lvrlianl~~~~~~--~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKE--VQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHH--HHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 33445555555555543 3433 44678888889999999999999999887777777777754
No 224
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=59.93 E-value=2.4e+02 Score=29.93 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHhh--Chhhhhhh---cceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHH
Q 004132 254 PEIQYVALRNINLIVQR--RPTILAHE---IKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (772)
Q Consensus 254 ~~iryvaL~~l~~i~~~--~p~~~~~~---~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~ 328 (772)
.++|+.+|+.+....-. .++-+..- ++...-.+.+++.+...+++++.+..+.+.+..++.++..-..-.+..|
T Consensus 80 ~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~- 158 (278)
T PF08631_consen 80 SELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF- 158 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH-
Confidence 37888888888765432 22222221 2223333556778888999999996666667777766665443333344
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHH-HHHhhccc
Q 004132 329 RKAVRAIGRCAIKLERAAERCISVLL-ELIKIKVN 362 (772)
Q Consensus 329 ~~~v~aIg~la~k~~~~~~~~vd~Ll-~ll~~~~~ 362 (772)
..++..|..++.+-++.+-.|++.++ ..+....+
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 45666777777776666666766543 33443333
No 225
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=59.84 E-value=5.1e+02 Score=35.18 Aligned_cols=134 Identities=16% Similarity=0.269 Sum_probs=79.2
Q ss_pred cCCCHHHHHHHHHHHHHhhh-hcCChHHH-HHHHHhcccchhhccC--CchhHHHHHHHHHHHHHhhChhhh-hhhccee
Q 004132 208 QHANCAVVLSAVKMILQQME-LITSTDVV-RNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQRRPTIL-AHEIKVF 282 (772)
Q Consensus 208 ~~~n~aVv~eaik~i~~~~~-~i~~~~~~-~~l~~~~~~~L~~Lls--~~~~iryvaL~~l~~i~~~~p~~~-~~~~~if 282 (772)
.|.|..|.+-|+..+-++.- .++.++.. -.+-+.+..|+..++. .+.++|-.+|+++..|++.+.+-+ +.+-.+|
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF 1226 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMF 1226 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHH
Confidence 46678888888876643211 11122211 1123345667777663 578999999999999988764433 3333333
Q ss_pred eec----cCCcHhHHHHHHHHHHHhccc----------ccHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHh
Q 004132 283 FCK----YNDPIYVKMEKLEIMIKLASD----------RNIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIK 341 (772)
Q Consensus 283 ~~~----~~d~~~Ik~~kL~lL~~L~n~----------~Nv~~Il~EL~~y~~~~-d~~~~~~~v~aIg~la~k 341 (772)
-++ .++...+-+.+.+.+-.++++ .++...+.-|.+|+... +.++.-.++.-+..|+.+
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 222 244466777788877766543 57778888888888532 344444455555544443
No 226
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.67 E-value=34 Score=42.24 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=59.3
Q ss_pred HHhhcCC-CcchHHHHHHHHHHhccCCCcHH-----HHHHHHHHhhcCCCCHHHHhHHHHHhcCCChh------h-----
Q 004132 15 VNCMQTE-NLELKKLVYLYLINYAKSQPDLA-----ILAVNTFVKDSQDPNPLIRALAVRTMGCIRVD------K----- 77 (772)
Q Consensus 15 i~l~~s~-~~~lKrl~YL~l~~~~~~~~dl~-----lL~iNtl~kDl~~~np~iralALrtl~~I~~~------e----- 77 (772)
...+.++ ..-+|..+.+.++.+....++.- .++.--+..-|.|+-|.|||.|+-+||.+-.. |
T Consensus 605 le~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~ 684 (1387)
T KOG1517|consen 605 LEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVV 684 (1387)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhh
Confidence 3444442 45677778888888777665532 23344456667778888888888777765321 0
Q ss_pred ----------h-HHHHHH----HHHhhhCCCChHHHHHHHHHHHHHHhh
Q 004132 78 ----------I-TEYLCD----PLQRCLKDDDPYVRKTAAICVAKLYDI 111 (772)
Q Consensus 78 ----------i-~~~l~~----~v~~~L~d~~pyVRK~Aa~~l~kl~~~ 111 (772)
+ +|.++. .+...++|.+|.||+..+.++.++..-
T Consensus 685 ~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 685 EEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred hhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 1 233333 555666777777777777777666543
No 227
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=58.50 E-value=95 Score=31.56 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=46.4
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCC
Q 004132 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (772)
Q Consensus 84 ~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~ 153 (772)
+.+.+...|.+.++|+.|+.+..+.-+ ..+ .+ .+...+..++.|++-.|.-+.-=+|-|++..++.
T Consensus 118 ~~l~~W~~s~~~W~rR~ai~~~l~~~~-~~~-~~--~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~ 183 (208)
T cd07064 118 PVMDEWSTDENFWLRRTAILHQLKYKE-KTD-TD--LLFEIILANLGSKEFFIRKAIGWALREYSKTNPD 183 (208)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHH-ccC-HH--HHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHH
Confidence 446777889999999999998766433 222 11 2456667778888777776666778888877653
No 228
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=57.92 E-value=1.7e+02 Score=27.72 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=46.5
Q ss_pred ccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhh-hhccHHH
Q 004132 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA-TEVDVDF 327 (772)
Q Consensus 249 Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~-~~~d~~~ 327 (772)
|-+.+|++++.||..+..+++.-..-|..++ .+++-++-|.+++++ .|. ...+..+
T Consensus 47 l~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev------------as~~Fl~el~kl~~~-----------k~~~~~~~~~V 103 (139)
T cd03567 47 IQSPQEKEALQALTVLEACMKNCGERFHSEV------------GKFRFLNELIKLVSP-----------KYLGSRTSEKV 103 (139)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH------------HhHHHHHHHHHHhcc-----------ccCCCCCCHHH
Confidence 3467889999999999888887655454332 233444445555432 232 2356777
Q ss_pred HHHHHHHHHHHHHhhhh
Q 004132 328 VRKAVRAIGRCAIKLER 344 (772)
Q Consensus 328 ~~~~v~aIg~la~k~~~ 344 (772)
+.+++.-|..++..|+.
T Consensus 104 k~kil~li~~W~~~f~~ 120 (139)
T cd03567 104 KTKIIELLYSWTLELPH 120 (139)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 78888888888877753
No 229
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=57.72 E-value=4.2e+02 Score=32.17 Aligned_cols=125 Identities=17% Similarity=0.108 Sum_probs=90.6
Q ss_pred CCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHH
Q 004132 20 TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYV 97 (772)
Q Consensus 20 s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~--~~ei~~~l~~~v~~~L~d~~pyV 97 (772)
+++...|+|..-|...+++.- -.-.|..|.--..|+=+.++.-||.|+..+- -||--..|...+.+.|.|++--+
T Consensus 281 ~~~~~~k~Ll~WyfE~~LK~l---y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKi 357 (988)
T KOG2038|consen 281 NKRLRDKILLMWYFEHELKIL---YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKI 357 (988)
T ss_pred ccccccceehHHHHHHHHHHH---HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhh
Confidence 556666777766777766653 2233444444455677899999999998763 56777788888999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHH--HHHHHHHHHHHh
Q 004132 98 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVV--ANAVAALAEIEE 149 (772)
Q Consensus 98 RK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv--~~av~aL~eI~~ 149 (772)
-.+|-.-+..+...+|.+--- .++.+.+++--+|.+-. .-|+..|.++.-
T Consensus 358 askAsylL~~L~~~HPnMK~V--vi~EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 358 ASKASYLLEGLLAKHPNMKIV--VIDEIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred hhhHHHHHHHHHhhCCcceee--hHHHHHHHHcccCccccceeehhhhhhhhHh
Confidence 999999999999999986443 67888888765554433 356666666643
No 230
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=57.49 E-value=3e+02 Score=30.30 Aligned_cols=182 Identities=16% Similarity=0.253 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHH-----HHHHHHHHhhccchhHHHHHHHHHHHHHhCcc
Q 004132 307 RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERC-----ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN 381 (772)
Q Consensus 307 ~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~-----vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~ 381 (772)
+|..+|+..|..+-...|..+- .-.|-+-+.|++..++.. +..+.+.++...=.|..+++..+++++.+++.
T Consensus 121 ~~~peil~~L~~gy~~~dial~---~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~ 197 (335)
T PF08569_consen 121 RHRPEILDILLRGYENPDIALN---CGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKK 197 (335)
T ss_dssp T--THHHHHHHHGGGSTTTHHH---HHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHH
T ss_pred hCCHHHHHHHHHHhcCccccch---HHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHH
Q ss_pred c--------HHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccCC---------HHHHHHHHhhhCCCCCHHHHHHHHH
Q 004132 382 T--------YESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN---------ADELLESFLESFPEEPAQVQLQLLT 444 (772)
Q Consensus 382 ~--------~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~---------~~~~L~~l~~~f~~e~~~vq~~lLt 444 (772)
. ++.........|.+ ..--+|+-.+-++||.--.-.| .++-|..++.-+.+.+..+|..+..
T Consensus 198 ~~a~fl~~n~d~ff~~~~~Ll~s-~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFh 276 (335)
T PF08569_consen 198 LVAEFLSNNYDRFFQKYNKLLES-SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFH 276 (335)
T ss_dssp HHHHHHHHTHHHHHHHHHHHCT--SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHH
Q ss_pred HHHHHhhcCCCC----------ChHHHHHHHHHhhhcC-CCChHHHhhHHHHHHHhcCCH
Q 004132 445 ATVKLFLKKPTE----------GPQQMIQVVLNNATVE-TDNPDLRDRAYIYWRLLSTDP 493 (772)
Q Consensus 445 a~~Kl~~~~p~~----------~~~~~v~~vl~~~~~~-s~~~dvrdRA~~y~~Ll~~~~ 493 (772)
+.|+|...|.+ .-..++..+-+..+.. .+..=..+|++....+-...|
T Consensus 277 -vFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~~L~~ 335 (335)
T PF08569_consen 277 -VFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIESLPP 335 (335)
T ss_dssp -HHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHHT---
T ss_pred -HHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHHhCCC
No 231
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=57.04 E-value=51 Score=31.37 Aligned_cols=49 Identities=31% Similarity=0.499 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCC
Q 004132 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN 132 (772)
Q Consensus 79 ~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~ 132 (772)
.+.+...+.++|.+.++-|+|.|.-|+... ++|.+.+ +.+.|..|++|+
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~--k~~~l~p---Y~d~L~~Lldd~ 63 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTW--KDPYLTP---YKDNLENLLDDK 63 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CcHHHHh---HHHHHHHHcCcc
Confidence 355666688999999999999999998873 2454443 567788888775
No 232
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=56.49 E-value=2.3e+02 Score=33.96 Aligned_cols=205 Identities=12% Similarity=0.095 Sum_probs=88.1
Q ss_pred CCchhHHHHHHHHHHHHHhhChhhhh-hhcceeee--ccCCcHhHHHHHHHHHHHhccccc--HHHHHHHHHHhhhh-cc
Q 004132 251 SAEPEIQYVALRNINLIVQRRPTILA-HEIKVFFC--KYNDPIYVKMEKLEIMIKLASDRN--IDQVLLEFKEYATE-VD 324 (772)
Q Consensus 251 s~~~~iryvaL~~l~~i~~~~p~~~~-~~~~if~~--~~~d~~~Ik~~kL~lL~~L~n~~N--v~~Il~EL~~y~~~-~d 324 (772)
..+|.-|+.-++.+..+....|.-+. +.+.-.+| +.++..+=...=+=+++.-+-..| ...++..|..-.+. ..
T Consensus 284 ~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~ 363 (700)
T KOG2137|consen 284 QKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP 363 (700)
T ss_pred ccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccccccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence 46888888888888888777664211 11100000 011111100111112222223333 33444444332221 11
Q ss_pred HHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh--CcccHHHHHHHHHHhcccCChH
Q 004132 325 VDFVRKAVRAIGRCAIKLER--AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR--YPNTYESIIATLCESLDTLDEP 400 (772)
Q Consensus 325 ~~~~~~~v~aIg~la~k~~~--~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~--~p~~~~~ii~~L~~~l~~~~~p 400 (772)
.+..--++...--|.+|.++ ..+.|+..|..-++...-.+-++++..+-.+... ++-.++.+++++....-.-...
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence 22222233334444444421 2233444333333333333333333333222211 2333445555554432111233
Q ss_pred HHHHHHHHHHhhhccccCC--HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCC
Q 004132 401 EAKASMIWIIGEYAERIDN--ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (772)
Q Consensus 401 ~a~~~~iwilGEy~~~i~~--~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~ 455 (772)
..+..++=++|+..+.++. ..+.+..+.+.....++.+.+..+...-+++.+.+.
T Consensus 444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~ 500 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS 500 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc
Confidence 4455666667776655543 234444455555555666666666666666666554
No 233
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=55.41 E-value=2.6e+02 Score=28.94 Aligned_cols=131 Identities=17% Similarity=0.093 Sum_probs=83.5
Q ss_pred cCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh--hhhHHHHHHHHHh-------h
Q 004132 19 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITEYLCDPLQR-------C 89 (772)
Q Consensus 19 ~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~--~ei~~~l~~~v~~-------~ 89 (772)
..++.+...-..-.+..++..+.+..-+++.++..=.+.+....++.++|-++.+-. +...+.+-+.+.. .
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~ 90 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSS 90 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccc
Confidence 334444333222234444433326677777887777777777778888888888742 2222333333332 1
Q ss_pred hC--CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh-cCCChhHHHHHHHHHHHHHhhC
Q 004132 90 LK--DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEENS 151 (772)
Q Consensus 90 L~--d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL-~D~d~~Vv~~av~aL~eI~~~~ 151 (772)
.. +....+.-..+.++.-+....|+.-. +++..|..+| .+.++.+.+.|+-++..+++.+
T Consensus 91 ~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~--~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 91 FSSKDEFWECLISIAASIRDICCSRPDHGV--DLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhChhhHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 22 23444455556778888888999444 4889999999 7889999999999999999654
No 234
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.38 E-value=80 Score=36.42 Aligned_cols=87 Identities=18% Similarity=0.261 Sum_probs=61.1
Q ss_pred CHHHHhHHHHHhcCCC-hhhhH-HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhH
Q 004132 59 NPLIRALAVRTMGCIR-VDKIT-EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMV 136 (772)
Q Consensus 59 np~iralALrtl~~I~-~~ei~-~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~V 136 (772)
...+..+|+-..+-|. .+++- +.+...+-..+.=.++.+||.--+|.+-++-.+|+. +.++.|.+-..|.|-.|
T Consensus 617 ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm----~vfDtL~r~shd~dl~v 692 (881)
T COG5110 617 EALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM----NVFDTLERSSHDGDLNV 692 (881)
T ss_pred HHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch----HHHHHHHHhccccchhH
Confidence 4466655554433332 22222 222233344444489999999999999999999986 46899999999999999
Q ss_pred HHHHHHHHHHHHh
Q 004132 137 VANAVAALAEIEE 149 (772)
Q Consensus 137 v~~av~aL~eI~~ 149 (772)
..|++-++.-|..
T Consensus 693 ~~ntIfamGLiGA 705 (881)
T COG5110 693 IINTIFAMGLIGA 705 (881)
T ss_pred HHHHHHHhhcccc
Confidence 9999988876653
No 235
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.36 E-value=3.7e+02 Score=30.81 Aligned_cols=286 Identities=16% Similarity=0.198 Sum_probs=133.2
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHH--HHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccc
Q 004132 81 YLCDPLQRCLKDDDPYVRKTAAICVAK--LYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (772)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~Aa~~l~k--l~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l 158 (772)
.++.-+.++|.-.+.-.--..+--+.| +|.-+...++..+.++.|.+|.--.+|..+-..+.++..++-.++-....+
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv 383 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMV 383 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHh
Confidence 344456666655553322222222222 222344445556788888888888888888888888877765432111122
Q ss_pred cHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHH-HH---HHHHHH-hHhhcCCCHHHHHHHHHHHHHhhhhcCCh-
Q 004132 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE-AE---NIVERV-TPRLQHANCAVVLSAVKMILQQMELITST- 232 (772)
Q Consensus 159 ~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e-~~---~il~~v-~~~L~~~n~aVv~eaik~i~~~~~~i~~~- 232 (772)
..+.+.+|...|.+-+ .-++ .+.+|-.....|.-. .. +.+..+ ...+...+.-|-++-+...+++.-.-.+.
T Consensus 384 ~~GllP~l~~ll~~d~-~~~i-A~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQ 461 (791)
T KOG1222|consen 384 NGGLLPHLASLLDSDT-KHGI-ALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQ 461 (791)
T ss_pred hccchHHHHHHhCCcc-cchh-hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccce
Confidence 2333445444443322 2222 122222222222211 11 111111 12344455555555544444321110111
Q ss_pred -----HHHHHHHHhcccchhhccCCchhHHHHHHHHHHHHHhhCh---hhhhhhccee--eeccCCcHhHHHHHHHHHHH
Q 004132 233 -----DVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRP---TILAHEIKVF--FCKYNDPIYVKMEKLEIMIK 302 (772)
Q Consensus 233 -----~~~~~l~~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~p---~~~~~~~~if--~~~~~d~~~Ik~~kL~lL~~ 302 (772)
..+..+.++.... .++ .-++.+..|.|... ..|-.++.-+ ....+++.+.-.+-|-.+..
T Consensus 462 lvceGqgL~~LM~ra~k~------~D~----lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlan 531 (791)
T KOG1222|consen 462 LVCEGQGLDLLMERAIKS------RDL----LLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLAN 531 (791)
T ss_pred EEecCcchHHHHHHHhcc------cch----HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhh
Confidence 1122222222110 111 01122222333221 1222222111 11124455665666666666
Q ss_pred hc-ccccHHHHHHHH--HHhhhh------ccHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhhc--cchhHHH
Q 004132 303 LA-SDRNIDQVLLEF--KEYATE------VDVDFVRKAVRAIGRCAIKLER----AAERCISVLLELIKIK--VNYVVQE 367 (772)
Q Consensus 303 L~-n~~Nv~~Il~EL--~~y~~~------~d~~~~~~~v~aIg~la~k~~~----~~~~~vd~Ll~ll~~~--~~~v~~e 367 (772)
|. +.--+..|+++. .-|+++ ...+++-+.|-++|.+|....- +....+++++++++.. .+.++-.
T Consensus 532 L~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~Q 611 (791)
T KOG1222|consen 532 LKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQ 611 (791)
T ss_pred cccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHH
Confidence 64 345577777754 244432 2356888899999998864321 1235789999999854 3455556
Q ss_pred HHHHHHHHHHh
Q 004132 368 AIIVIKDIFRR 378 (772)
Q Consensus 368 ~i~~l~~i~~~ 378 (772)
.+.++.++++.
T Consensus 612 iiyVF~Q~l~H 622 (791)
T KOG1222|consen 612 IIYVFLQFLKH 622 (791)
T ss_pred HHHHHHHHHHH
Confidence 77777777765
No 236
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=55.16 E-value=43 Score=33.34 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh
Q 004132 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI 129 (772)
Q Consensus 77 ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL 129 (772)
-+++.++.+++++|...++-|.+.+..++-++...++-.-+ .+.+.++++|
T Consensus 76 PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~--aLvPyyrqLL 126 (183)
T PF10274_consen 76 PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE--ALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHH
Confidence 45678899999999999999999999999999655443322 3666666664
No 237
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=54.87 E-value=13 Score=32.31 Aligned_cols=55 Identities=15% Similarity=0.246 Sum_probs=39.4
Q ss_pred CCeeEEEEEEEecCCCCccccceeeccCccCcccCCCCCCCcCCCCCeeeEEEeeeec
Q 004132 657 DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLF 714 (772)
Q Consensus 657 ~~~~~~~~~~tN~~~~~~~~f~~q~n~n~fgl~~~~~~~~~~l~p~~~~~~~~~l~~~ 714 (772)
+..+.+.++++|.+.....+|.+++..+.-.. +...++.|.||++..+.+.+...
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSV---STVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE---EEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCcee---ccEEECCcCCCcEEEEEEEEEeC
Confidence 56788999999999999999999876654332 33456899999998888877554
No 238
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=54.61 E-value=3.4e+02 Score=30.17 Aligned_cols=130 Identities=13% Similarity=0.157 Sum_probs=74.5
Q ss_pred cCCCcchHHHHHHHHHHhccCC---Cc------HHHHHHHHHHhhcCC-------CCHHHHhHHHHHhcCCC-hhhhHHH
Q 004132 19 QTENLELKKLVYLYLINYAKSQ---PD------LAILAVNTFVKDSQD-------PNPLIRALAVRTMGCIR-VDKITEY 81 (772)
Q Consensus 19 ~s~~~~lKrl~YL~l~~~~~~~---~d------l~lL~iNtl~kDl~~-------~np~iralALrtl~~I~-~~ei~~~ 81 (772)
++.+..-|.=+|+.+.+..+.+ |+ -.-+.+..+++|+.+ .+-.+...|||++|.+- .++++..
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 4566677788999887776543 23 355677889999977 45677889999999864 4444433
Q ss_pred --------HHHHHHhhhCC-CChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcC-----CChhHHHHHHHHHHHH
Q 004132 82 --------LCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-----NNPMVVANAVAALAEI 147 (772)
Q Consensus 82 --------l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D-----~d~~Vv~~av~aL~eI 147 (772)
++......+.+ ..|=.--++++.+.+.-+..|..+.. +....+...+.+ ....++.-++.++..+
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~-~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTS-DRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccch-hhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 33444445544 33434444455555555556665443 344444444322 2234444444444444
Q ss_pred Hh
Q 004132 148 EE 149 (772)
Q Consensus 148 ~~ 149 (772)
..
T Consensus 162 l~ 163 (372)
T PF12231_consen 162 LS 163 (372)
T ss_pred HH
Confidence 33
No 239
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=54.44 E-value=17 Score=23.98 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=18.4
Q ss_pred HHhHHHHHhcCCChhhhHHHHHHHH
Q 004132 62 IRALAVRTMGCIRVDKITEYLCDPL 86 (772)
Q Consensus 62 iralALrtl~~I~~~ei~~~l~~~v 86 (772)
||..|.+.||.|+.++-++.|...+
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6888999999999977777755443
No 240
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=54.44 E-value=2.9e+02 Score=29.22 Aligned_cols=202 Identities=15% Similarity=0.181 Sum_probs=103.1
Q ss_pred ccCCchhHHHHHHHHHHHHHhhChh-hhhh-hcc---eeeeccCCcHhHHHHHHHHHHHhccc-----ccHHHHHHHHHH
Q 004132 249 LLSAEPEIQYVALRNINLIVQRRPT-ILAH-EIK---VFFCKYNDPIYVKMEKLEIMIKLASD-----RNIDQVLLEFKE 318 (772)
Q Consensus 249 Lls~~~~iryvaL~~l~~i~~~~p~-~~~~-~~~---if~~~~~d~~~Ik~~kL~lL~~L~n~-----~Nv~~Il~EL~~ 318 (772)
|.+.++.+|--|++.|..++.+-|. .+.. ++. -|||..=+|...-..+|+-+.+|..- +.+..+++.+.+
T Consensus 8 Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~ 87 (262)
T PF14500_consen 8 LTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQ 87 (262)
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHH
Confidence 3467899999999999999888763 3333 332 46764444433333446666666543 345555655543
Q ss_pred hhh--hccHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHhCcccHHHHHHHHH
Q 004132 319 YAT--EVDVDFVRKAVRAIGRCAIKLERA----AERCISVLLELIKIKVNY-VVQEAIIVIKDIFRRYPNTYESIIATLC 391 (772)
Q Consensus 319 y~~--~~d~~~~~~~v~aIg~la~k~~~~----~~~~vd~Ll~ll~~~~~~-v~~e~i~~l~~i~~~~p~~~~~ii~~L~ 391 (772)
... .-...-|..+.+-+..+..++... ...++..++++++...+- -.--+-..++.++++++- ...++.++
T Consensus 88 ~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--~~~~e~lF 165 (262)
T PF14500_consen 88 NVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--SEFAEDLF 165 (262)
T ss_pred hCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--chhHHHHH
Confidence 221 112223333334444444444322 223455555555433321 111111233444455542 33344444
Q ss_pred Hhccc---------------CChHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCC
Q 004132 392 ESLDT---------------LDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (772)
Q Consensus 392 ~~l~~---------------~~~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~ 455 (772)
+.+.. ++..+.+.++--++.--.. . ++..+..+++++....+.+|.-.|.++...+.+++.
T Consensus 166 d~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-f--a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 166 DVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-F--APFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-h--HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 43210 2222344444444421110 0 456667777777777788888888888777777753
No 241
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=54.20 E-value=4.5e+02 Score=31.34 Aligned_cols=139 Identities=16% Similarity=0.185 Sum_probs=86.2
Q ss_pred ccHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHH-----HHHHHHH
Q 004132 323 VDVDFVRKAVRAIGRCAIKL-----ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYES-----IIATLCE 392 (772)
Q Consensus 323 ~d~~~~~~~v~aIg~la~k~-----~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~-----ii~~L~~ 392 (772)
.|.+|++.+...+...+..+ ........+-|++++......|-..+.-++.+++-+|.+.++. .|.++.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 47888888766554444322 2334456778888887766777777778999999988776554 3566666
Q ss_pred hcccCChHHHHHHHHHHHhhhccccCC--HHHHHHHHh-----hhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 004132 393 SLDTLDEPEAKASMIWIIGEYAERIDN--ADELLESFL-----ESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVV 465 (772)
Q Consensus 393 ~l~~~~~p~a~~~~iwilGEy~~~i~~--~~~~L~~l~-----~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~v 465 (772)
++.+ .++..++...|++..-....++ -...++++- +--.+++..||.+.+..+=.+-.. .++.+..+
T Consensus 469 ~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~-----~~~svdfl 542 (678)
T KOG1293|consen 469 MLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN-----SRKSVDFL 542 (678)
T ss_pred HhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC-----cHHHHHHH
Confidence 6655 3567889999999763321111 112222221 122456778888877765555432 34566666
Q ss_pred HH
Q 004132 466 LN 467 (772)
Q Consensus 466 l~ 467 (772)
++
T Consensus 543 l~ 544 (678)
T KOG1293|consen 543 LE 544 (678)
T ss_pred HH
Confidence 65
No 242
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=53.51 E-value=2.5e+02 Score=33.22 Aligned_cols=59 Identities=8% Similarity=0.257 Sum_probs=25.9
Q ss_pred HhhhccccCCHH-HHHHHHhhhCCC--CCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhh
Q 004132 410 IGEYAERIDNAD-ELLESFLESFPE--EPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNA 469 (772)
Q Consensus 410 lGEy~~~i~~~~-~~L~~l~~~f~~--e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~ 469 (772)
+.+-...++.+. -+...+.++|+. .+..++...+..+.++..-.|.- ..+++.-+++..
T Consensus 149 L~~Il~lvP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L-~~~Il~lIi~rL 210 (563)
T PF05327_consen 149 LQKILRLVPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPEL-RSDILSLIIERL 210 (563)
T ss_dssp HHHHHHH-GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGG-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHH-HHHHHHHHHHHH
Confidence 333333344333 333444455543 45555666666666666555542 233444444443
No 243
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=53.47 E-value=53 Score=31.78 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=36.6
Q ss_pred CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHH
Q 004132 92 DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (772)
Q Consensus 92 d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI 147 (772)
...+-||-.|.+++.|+++..++...+ .+.+.+..++.+.+..-...++.++..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~l 70 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTAL 70 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHH
Confidence 567789999999999998776665543 3456666666554444444555555554
No 244
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=53.02 E-value=3.2e+02 Score=34.27 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhhcccc--C--CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC--ChHHHHHHHHHhhhcCCC
Q 004132 401 EAKASMIWIIGEYAERI--D--NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE--GPQQMIQVVLNNATVETD 474 (772)
Q Consensus 401 ~a~~~~iwilGEy~~~i--~--~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~--~~~~~v~~vl~~~~~~s~ 474 (772)
+.+-.++-+|||-+.+- + ..-..|+.++..|...+.++-+.+|..+.+++++.|+- .++.++..+...+. ..
T Consensus 520 etk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF~~hnIEm~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~rkK~--a~ 597 (1128)
T KOG2051|consen 520 ETKLKIVRFISELCKFQLVPKFEIFSCLKMLLNDFTHHNIEMACVLLESCGRFLLRSPETKLRMRVFLEQIKRKKR--AS 597 (1128)
T ss_pred hhhhhhhhhHHhhhhhCccChHHHHHHHHHHHHhcccccHHHHHHHHHhcchhhhcChhHHHHHHHHHHHHHHHHH--Hh
Confidence 34566788899976542 2 24577889999999999999999999999999999962 23444555543332 34
Q ss_pred ChHHHhhHHH
Q 004132 475 NPDLRDRAYI 484 (772)
Q Consensus 475 ~~dvrdRA~~ 484 (772)
..|=|+.+..
T Consensus 598 ~lDsr~~~~i 607 (1128)
T KOG2051|consen 598 ALDSRQATLI 607 (1128)
T ss_pred hhchHHHHHH
Confidence 5566665544
No 245
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=52.85 E-value=2.1e+02 Score=27.18 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=44.9
Q ss_pred ccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHH
Q 004132 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (772)
Q Consensus 249 Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~ 328 (772)
|.+++|++++.||..+..+++.-...|..++ ..++=++-|.++++. ..+..++
T Consensus 50 l~~~n~~vql~AL~LLe~~vkNCG~~fh~ev------------as~~fl~~l~~l~~~---------------~~~~~Vk 102 (142)
T cd03569 50 LLSKNPNVQLYALLLLESCVKNCGTHFHDEV------------ASREFMDELKDLIKT---------------TKNEEVR 102 (142)
T ss_pred HcCCChHHHHHHHHHHHHHHHHCCHHHHHHH------------hhHHHHHHHHHHHcc---------------cCCHHHH
Confidence 4467899999999999998887544443322 223333444444432 3567788
Q ss_pred HHHHHHHHHHHHhhhh
Q 004132 329 RKAVRAIGRCAIKLER 344 (772)
Q Consensus 329 ~~~v~aIg~la~k~~~ 344 (772)
.+++.-|..++..|..
T Consensus 103 ~kil~li~~W~~~f~~ 118 (142)
T cd03569 103 QKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 8888888888877754
No 246
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=52.21 E-value=4.4e+02 Score=31.72 Aligned_cols=64 Identities=19% Similarity=0.365 Sum_probs=32.8
Q ss_pred HhcccchhhccC-Cc-hhHHHHHHHHHHHHHhhCh-hhhhhhc-ce-eeeccCCcHhHHHHHHHHHHHh
Q 004132 240 KKMAPPLVTLLS-AE-PEIQYVALRNINLIVQRRP-TILAHEI-KV-FFCKYNDPIYVKMEKLEIMIKL 303 (772)
Q Consensus 240 ~~~~~~L~~Lls-~~-~~iryvaL~~l~~i~~~~p-~~~~~~~-~i-f~~~~~d~~~Ik~~kL~lL~~L 303 (772)
.++.+.|.-.++ .+ -.+....++++..|.++-| +-+..++ .. +.|..+++..|.-++|.++-..
T Consensus 348 ~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv 416 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTV 416 (700)
T ss_pred hhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHH
Confidence 345555555554 22 3455666677766666543 2333332 22 3455555566666666655544
No 247
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=51.78 E-value=2.4e+02 Score=27.55 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=31.1
Q ss_pred HHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 004132 300 MIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER 344 (772)
Q Consensus 300 L~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~ 344 (772)
+-+| +++|++.++.+|.+...+ +++.+..+++.|-..+...+.
T Consensus 8 lnkL-s~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~ 50 (200)
T smart00543 8 INKL-SPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPN 50 (200)
T ss_pred HhhC-CHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcc
Confidence 3344 478999999999876644 357778888888777765543
No 248
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=50.46 E-value=2.2e+02 Score=26.61 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=48.4
Q ss_pred ccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHH
Q 004132 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (772)
Q Consensus 249 Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~ 328 (772)
|.+++|++++.||..+..++..-...|..++ ..++.|+-|.+++... ...+..++
T Consensus 46 l~~~n~~vql~AL~lLd~~vkNcg~~f~~~i------------~s~~fl~~l~~l~~~~-------------~~~~~~Vk 100 (133)
T cd03561 46 IKYGNPHVQLLALTLLELLVKNCGKPFHLQV------------ADKEFLLELVKIAKNS-------------PKYDPKVR 100 (133)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhCChHHHHHH------------hhHHHHHHHHHHhCCC-------------CCCCHHHH
Confidence 4467899999999999999887665554332 2234444455555443 13577888
Q ss_pred HHHHHHHHHHHHhhhh
Q 004132 329 RKAVRAIGRCAIKLER 344 (772)
Q Consensus 329 ~~~v~aIg~la~k~~~ 344 (772)
.+++.-|..++..|..
T Consensus 101 ~kil~ll~~W~~~f~~ 116 (133)
T cd03561 101 EKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8888888888887764
No 249
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.33 E-value=1.3e+02 Score=33.47 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=53.9
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCC
Q 004132 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (772)
Q Consensus 84 ~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~ 152 (772)
.++..-++|.+.-|||.|..++-.+...+|+.+.. ..+++.+..+..|.+..|+....-++..+....+
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~ 131 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPAC 131 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcc
Confidence 34566689999999999999999999888876542 2345677788899999999998888877554443
No 250
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=48.97 E-value=1e+02 Score=29.22 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=55.7
Q ss_pred HHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC----C---hhhhH-HHHHHHHHhhhCC------CChHH
Q 004132 32 YLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----R---VDKIT-EYLCDPLQRCLKD------DDPYV 97 (772)
Q Consensus 32 ~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I----~---~~ei~-~~l~~~v~~~L~d------~~pyV 97 (772)
-++-....+++-+.-++-.++|=++++||.+.-+||..|-.+ + -.+++ ..+...+.+++.+ .++-|
T Consensus 24 eicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~V 103 (139)
T cd03567 24 AFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKV 103 (139)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHH
Confidence 555556677777888999999999999999998888766443 1 12333 4455667777753 57889
Q ss_pred HHHHHHHHHHHH
Q 004132 98 RKTAAICVAKLY 109 (772)
Q Consensus 98 RK~Aa~~l~kl~ 109 (772)
|.+.+..+..-.
T Consensus 104 k~kil~li~~W~ 115 (139)
T cd03567 104 KTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHH
Confidence 998777655443
No 251
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=48.82 E-value=48 Score=28.09 Aligned_cols=47 Identities=23% Similarity=0.497 Sum_probs=33.3
Q ss_pred eEEEEEEEecCCCCccccceeecc---CccCcccCC--CCCCC----cCCCCCeee
Q 004132 660 VFYSMLFENNTQTPLDGFMIQFNK---NTFGLAAGG--ALQVP----QLQPGTSGR 706 (772)
Q Consensus 660 ~~~~~~~tN~~~~~~~~f~~q~n~---n~fgl~~~~--~~~~~----~l~p~~~~~ 706 (772)
...+.+++|.+..++.++.|...+ +..|+...+ ...+| +|.|||+..
T Consensus 19 ~qy~v~I~N~~~~~I~~~~i~~~~l~~~iW~l~~~~~~~y~lPs~~~~i~pg~s~~ 74 (80)
T PF09478_consen 19 TQYDVTITNNGSKPIKSLKISIDNLYGSIWGLDKVSGNTYTLPSYQPTIKPGQSFT 74 (80)
T ss_pred EEEEEEEEECCCCeEEEEEEEECccchhheeEEeccCCEEECCccccccCCCCEEE
Confidence 379999999999999999998872 334665521 13343 788888753
No 252
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=48.73 E-value=1.6e+02 Score=32.42 Aligned_cols=143 Identities=15% Similarity=0.212 Sum_probs=77.5
Q ss_pred CCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCC---CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcC------CCh
Q 004132 5 KDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ---PDLAILAVNTFVKDSQDPNPLIRALAVRTMGC------IRV 75 (772)
Q Consensus 5 ~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~---~dl~lL~iNtl~kDl~~~np~iralALrtl~~------I~~ 75 (772)
++.-.+|-.|++.+-+++...++.++--+..-..-+ |-+...+...+..-+.. |-..-...+|.+.. |..
T Consensus 174 ~Elq~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~l 252 (343)
T cd08050 174 KELQLYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHL 252 (343)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCch
Confidence 344457788888766666665555444332222222 33333344444433332 32111122222222 333
Q ss_pred hhhHHHHHHHHHhhh----------CCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcC-CChh-HHHHHH
Q 004132 76 DKITEYLCDPLQRCL----------KDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISD-NNPM-VVANAV 141 (772)
Q Consensus 76 ~ei~~~l~~~v~~~L----------~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~D-~d~~-Vv~~av 141 (772)
..-.-.++|.+..|+ .+.+..+|..||..+..+++........ ..+...+.+.|.| ..+. ....|+
T Consensus 253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi 332 (343)
T cd08050 253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAI 332 (343)
T ss_pred HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence 444455677777777 3456799999999999999886655432 1233344444443 3343 478888
Q ss_pred HHHHHHH
Q 004132 142 AALAEIE 148 (772)
Q Consensus 142 ~aL~eI~ 148 (772)
..|..++
T Consensus 333 ~GL~~lG 339 (343)
T cd08050 333 VGLSALG 339 (343)
T ss_pred HHHHHhC
Confidence 8888775
No 253
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=48.61 E-value=3.5e+02 Score=28.57 Aligned_cols=82 Identities=15% Similarity=0.264 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHHhhh---hccHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhccchhHHHHH
Q 004132 294 MEKLEIMIKLASDRNIDQVLLEFKEYAT---EVDVDFVRKAVRAIGRCAIKL-ERAAERCISVLLELIKIKVNYVVQEAI 369 (772)
Q Consensus 294 ~~kL~lL~~L~n~~Nv~~Il~EL~~y~~---~~d~~~~~~~v~aIg~la~k~-~~~~~~~vd~Ll~ll~~~~~~v~~e~i 369 (772)
...-+.|..+|...+...+-+=+..|++ ....+|.+.+++.|. +.| |...-..+..+++++..+...+...+.
T Consensus 133 ~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~---~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 133 IEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLR---EAFFPDHEFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HHhCchhHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 3455777778776555555555555553 345678888887764 444 555667899999999998888888888
Q ss_pred HHHHHHHHh
Q 004132 370 IVIKDIFRR 378 (772)
Q Consensus 370 ~~l~~i~~~ 378 (772)
.+++-++..
T Consensus 210 ~iL~~ll~~ 218 (262)
T PF14225_consen 210 QILKVLLPH 218 (262)
T ss_pred HHHHHHhcc
Confidence 888877764
No 254
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=48.24 E-value=1.3e+02 Score=29.19 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHHhCcccHH
Q 004132 308 NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK---VNYVVQEAIIVIKDIFRRYPNTYE 384 (772)
Q Consensus 308 Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~---~~~v~~e~i~~l~~i~~~~p~~~~ 384 (772)
-..+|++++.+.+-.....-...-++.++.+..+++-.-..|.+.+-++++.- ...+..-.+..+.-+++-.+..++
T Consensus 52 ~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~s~~lrd 131 (158)
T PF14676_consen 52 IRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKFSPSLRD 131 (158)
T ss_dssp GHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34455555554432221111122345555555555544444444444433322 222333444556666666777777
Q ss_pred HHHHHHHHhcccCChHHHHHHH
Q 004132 385 SIIATLCESLDTLDEPEAKASM 406 (772)
Q Consensus 385 ~ii~~L~~~l~~~~~p~a~~~~ 406 (772)
+++-.|-+.+-. .+.++|.++
T Consensus 132 ~lilvLRKamf~-r~~~~R~~A 152 (158)
T PF14676_consen 132 SLILVLRKAMFS-RELDARQMA 152 (158)
T ss_dssp HHHHHHHHHTT--SSHHHHHHH
T ss_pred HHHHHHHHHHcc-ccHHHHHHH
Confidence 777777766643 345555443
No 255
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=48.05 E-value=4.3e+02 Score=29.39 Aligned_cols=242 Identities=12% Similarity=0.091 Sum_probs=122.1
Q ss_pred hHHHHHHH-HHHhccC-CCcHHHHHHHHHHhhcCC--CCHHHHhHHHHHhcCCC------hhhhHHHHHHHHHhhhC-CC
Q 004132 25 LKKLVYLY-LINYAKS-QPDLAILAVNTFVKDSQD--PNPLIRALAVRTMGCIR------VDKITEYLCDPLQRCLK-DD 93 (772)
Q Consensus 25 lKrl~YL~-l~~~~~~-~~dl~lL~iNtl~kDl~~--~np~iralALrtl~~I~------~~ei~~~l~~~v~~~L~-d~ 93 (772)
+|-++|+. -..++.. ..|.+.-.+.....-+.+ .+-.+...++.+++.-. +.+..+.+...+...-. =+
T Consensus 67 Lkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~ 146 (372)
T PF12231_consen 67 LKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFP 146 (372)
T ss_pred HHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCC
Confidence 56666663 2222221 223333344444444433 33455556666665532 33344444443333332 24
Q ss_pred ChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC---------ccc--ccH
Q 004132 94 DPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP---------IFE--ITS 160 (772)
Q Consensus 94 ~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~---------~~~--l~~ 160 (772)
+.-|-.-+..++-++....|+.+.. ..|++.+...+-+....+...|+..+.++...-++. .++ +..
T Consensus 147 s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~ 226 (372)
T PF12231_consen 147 SKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLEN 226 (372)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcccccc
Confidence 4556677788889999999986543 348888888887888888888887777765322111 000 000
Q ss_pred ----H-HHHHHHHHhhc---C----ChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhh
Q 004132 161 ----H-TLSKLLTALNE---C----TEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMEL 228 (772)
Q Consensus 161 ----~-~~~~Ll~~L~~---~----~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~ 228 (772)
+ ...+|-+.+.+ . .=|+-+ +.+|+.-.-...+...+.+.....++++.++++..+|..+--.+...
T Consensus 227 ~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~--i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 227 GKLIQLYCERLKEMIKSKDEYKLAMQIWSVV--ILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYA 304 (372)
T ss_pred ccHHHHHHHHHHHHHhCcCCcchHHHHHHHH--HHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 0 11112222222 1 224432 23333211233445566666777789999999999988653222111
Q ss_pred c-CChHHHHHHHHhcccchhhccC--Cch----hHHHHHHHHHHHHH
Q 004132 229 I-TSTDVVRNLCKKMAPPLVTLLS--AEP----EIQYVALRNINLIV 268 (772)
Q Consensus 229 i-~~~~~~~~l~~~~~~~L~~Lls--~~~----~iryvaL~~l~~i~ 268 (772)
. .++...+...+-+..|+..-+. ..+ +++-.++..+..+.
T Consensus 305 ~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 305 SNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred hcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 1 1222222223334455544442 223 56666666666554
No 256
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=46.60 E-value=1.3e+02 Score=33.44 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=66.6
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhhhH-HHHHH
Q 004132 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKIT-EYLCD 84 (772)
Q Consensus 13 ~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~-------~~ei~-~~l~~ 84 (772)
+|.|.-.-.+-..+-=+-|-++-...++||..--++-.+.|-+++.||.|.-+||..+..+. ..|++ +.+..
T Consensus 12 ~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~ 91 (462)
T KOG2199|consen 12 DVEKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTT 91 (462)
T ss_pred HHHHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHH
Confidence 33444443444444445557788888899999999999999999999999999999887642 12333 55667
Q ss_pred HHHhhhC-CCChHHHHHHHHHH
Q 004132 85 PLQRCLK-DDDPYVRKTAAICV 105 (772)
Q Consensus 85 ~v~~~L~-d~~pyVRK~Aa~~l 105 (772)
.+++++. ...+-|+++-...+
T Consensus 92 el~al~~~~~h~kV~~k~~~lv 113 (462)
T KOG2199|consen 92 ELRALIESKAHPKVCEKMRDLV 113 (462)
T ss_pred HHHHHHhhcccHHHHHHHHHHH
Confidence 7888888 57888887755543
No 257
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=46.22 E-value=32 Score=24.16 Aligned_cols=27 Identities=33% Similarity=0.282 Sum_probs=21.8
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHH
Q 004132 82 LCDPLQRCLKDDDPYVRKTAAICVAKL 108 (772)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~Aa~~l~kl 108 (772)
.++.+.+++.+.++.+++.|+.++..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456677888888999999999888765
No 258
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.37 E-value=1.7e+02 Score=36.29 Aligned_cols=147 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh---ccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhC
Q 004132 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI---NAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENS 151 (772)
Q Consensus 77 ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~---~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~ 151 (772)
+|+..+....++.|.|++-.+|=+|..++.-.... +++.+-. ..+.+.+...+.++||.++--|+..+..++...
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q ss_pred CC----CcccccHHHHHHHHHHhh---cCChh--------HHHHHHHHHhccccC---CHHHHHHHHHHHhHhhcCCCHH
Q 004132 152 SR----PIFEITSHTLSKLLTALN---ECTEW--------GQVFILDALSRYKAA---DAREAENIVERVTPRLQHANCA 213 (772)
Q Consensus 152 ~~----~~~~l~~~~~~~Ll~~L~---~~~ew--------~qv~iL~~L~~~~~~---~~~e~~~il~~v~~~L~~~n~a 213 (772)
++ ...+-.-+.+.++|...- ...|. .|.+++.-+..+.+. ...++..+.+.+.-.+....+.
T Consensus 879 gDFv~sR~l~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l~~~~l~~v~e~~~I~l~~~~~q 958 (1014)
T KOG4524|consen 879 GDFVASRFLEDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLELAGVSLHMVAEGVKIYLSLIQPQ 958 (1014)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeecccccHHHHhhhhhhhHHhcChH
Q ss_pred HHHHHHHHHH
Q 004132 214 VVLSAVKMIL 223 (772)
Q Consensus 214 Vv~eaik~i~ 223 (772)
++-+.++..+
T Consensus 959 ~Lqe~~~s~F 968 (1014)
T KOG4524|consen 959 VLQEIARSCF 968 (1014)
T ss_pred HHHHHHHHHH
No 259
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=44.98 E-value=1.5e+02 Score=31.66 Aligned_cols=70 Identities=19% Similarity=0.422 Sum_probs=45.6
Q ss_pred HHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhh----hhhh------cc-eeeecc--------CCcHhHH
Q 004132 234 VVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI----LAHE------IK-VFFCKY--------NDPIYVK 293 (772)
Q Consensus 234 ~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~----~~~~------~~-if~~~~--------~d~~~Ik 293 (772)
.+.+..-.+.|++..++. .++++|.-+++.+..++.+-|.. +... .. .+-|++ ++...+=
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 344455568899899995 58999999999999999865432 2221 11 223444 3445555
Q ss_pred HHHHHHHHHh
Q 004132 294 MEKLEIMIKL 303 (772)
Q Consensus 294 ~~kL~lL~~L 303 (772)
..+...|+.|
T Consensus 192 ~~ay~~L~~L 201 (282)
T PF10521_consen 192 QAAYPALLSL 201 (282)
T ss_pred HHHHHHHHHH
Confidence 6666777776
No 260
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=44.93 E-value=4.8e+02 Score=30.91 Aligned_cols=121 Identities=13% Similarity=0.210 Sum_probs=72.9
Q ss_pred ccccHHHHHHHHHHhh-hhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHH--------------HHH
Q 004132 305 SDRNIDQVLLEFKEYA-TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQ--------------EAI 369 (772)
Q Consensus 305 n~~Nv~~Il~EL~~y~-~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~--------------e~i 369 (772)
+.. .+.+|..++.+- ...+.++++.-++=++.++...+.....|++.|++.+.-....... .+-
T Consensus 68 d~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH 146 (563)
T PF05327_consen 68 DSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVH 146 (563)
T ss_dssp -SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH---------------HH
T ss_pred hhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHH
Confidence 444 888888887663 2578899988888889998888888888888888877654332211 244
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHhcccCChHHH-----HHHHHHHHhhhccccCCHHHHHHHHhh
Q 004132 370 IVIKDIFRRYPNTYESIIATLCESLDTLDEPEA-----KASMIWIIGEYAERIDNADELLESFLE 429 (772)
Q Consensus 370 ~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a-----~~~~iwilGEy~~~i~~~~~~L~~l~~ 429 (772)
..++.|++-.|.....+...+.+.+-....+.. ...++|+. +|+..+ ..++++.+++
T Consensus 147 ~~L~~Il~lvP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~-~Y~P~L--~~~Il~lIi~ 208 (563)
T PF05327_consen 147 DALQKILRLVPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLT-EYCPEL--RSDILSLIIE 208 (563)
T ss_dssp HHHHHHHHH-GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHH-CC-GGG--HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHH-cchHHH--HHHHHHHHHH
Confidence 578888888898777777777776644333322 13344444 565444 3344444443
No 261
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=44.57 E-value=52 Score=34.18 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=55.7
Q ss_pred CCCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeecc-------CccCcccCC-CCCCC---cCCCCCeeeEEEee
Q 004132 644 GQGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFNK-------NTFGLAAGG-ALQVP---QLQPGTSGRTLLPM 711 (772)
Q Consensus 644 ~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~-------n~fgl~~~~-~~~~~---~l~p~~~~~~~~~l 711 (772)
..|+.+.++ +...++.-...++++|.+..+ +.+|... ..-+-.... +...| .|+||++....+-.
T Consensus 21 ~Agi~l~~TRvIy~~~~k~~sv~l~N~~~~p---~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~ 97 (234)
T PRK15192 21 QAGVVIGGTRFIYHAGAPALSVPVSNHSEAS---WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVY 97 (234)
T ss_pred EeeEEeCceEEEEcCCCceEEEEEEeCCCCc---EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEE
Confidence 367777766 555567778899999988764 7777731 000000011 22233 78899987777654
Q ss_pred eecC-C-------------CCCC-CCCcchhhhhhcCCCCeEEEee
Q 004132 712 VLFQ-N-------------MSAG-PPSSLLQVAVKNNQQPVWYFND 742 (772)
Q Consensus 712 ~~~~-~-------------~~~~-~~~~~lqvAik~n~~~v~yf~~ 742 (772)
.... | ..+. +..+.||+|+++.+. +||=-.
T Consensus 98 ~~~~LP~DRESlf~lnv~~IPp~~~~~n~l~iair~riK-lFYRP~ 142 (234)
T PRK15192 98 TGAPLPADRESLFTLSIAAIPSGKPEANRVQMAFRSALK-LLYRPE 142 (234)
T ss_pred CCCCCCCcceEEEEEEEEecCCCCCCCcEEEEEEEeeee-EEEccc
Confidence 3221 0 1111 113469999999887 887433
No 262
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=44.19 E-value=6.3e+02 Score=30.16 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=20.9
Q ss_pred CCchhHHHHHHHHHHHHHhhChhhhh
Q 004132 251 SAEPEIQYVALRNINLIVQRRPTILA 276 (772)
Q Consensus 251 s~~~~iryvaL~~l~~i~~~~p~~~~ 276 (772)
|+.|+-+|+||..+..++...-.++.
T Consensus 58 S~~pqskyiALs~LdklIttkWkllp 83 (1053)
T COG5101 58 SKLPQSKYIALSLLDKLITTKWKLLP 83 (1053)
T ss_pred ccCcchhhhHHHHHHHHHHhhhhhCC
Confidence 46799999999999999887655543
No 263
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=43.04 E-value=1.3e+02 Score=32.78 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhcCCCChHHHhhHHHHHHHhc
Q 004132 460 QMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (772)
Q Consensus 460 ~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~ 490 (772)
++++.++...+..+.-...+.-+....+|++
T Consensus 214 ~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 214 DILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 4666777766644444566666666666664
No 264
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=42.52 E-value=93 Score=31.02 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC--CChHHHHHHH
Q 004132 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRKTAA 102 (772)
Q Consensus 25 lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d--~~pyVRK~Aa 102 (772)
.|.+.+=+= .+...+|+.. ..+.+-..-.|+..+.-|+..|..-...+.... ..+|.. .++.||+.|+
T Consensus 29 ek~~lW~~R-~~l~~~p~aL----~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A-----L~LL~~~f~~~~VR~yAv 98 (184)
T PF00613_consen 29 EKELLWKYR-YYLMNNPEAL----PKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA-----LELLSPNFPDPFVRQYAV 98 (184)
T ss_dssp HHHHHHHTH-HHHTTSGGGH----HHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH-----HHCTSTT---HHHHHHHH
T ss_pred HHHHHHHCC-HHhhhCchHH----HHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH-----HHHHHhhccHHHHHHHHH
Confidence 444444432 4445555532 233333444555555555555544322222211 122222 3466666665
Q ss_pred HHHHHHHhhccccccccchHHHHHHhhc
Q 004132 103 ICVAKLYDINAELVEDRGFLESLKDLIS 130 (772)
Q Consensus 103 ~~l~kl~~~~p~~~~~~~~~~~L~~lL~ 130 (772)
.++-+ ..++.+.. +++.|.+.|.
T Consensus 99 ~~L~~---~~d~~l~~--yLpQLVQaLr 121 (184)
T PF00613_consen 99 RRLES---LSDEELLF--YLPQLVQALR 121 (184)
T ss_dssp HHHCT---S-HHHHHH--HHHHHHHHGG
T ss_pred HHHHH---cCchHHHH--HHHHHHHHhe
Confidence 55543 12232322 5555555554
No 265
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=42.24 E-value=88 Score=27.36 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=42.4
Q ss_pred CCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcC--CChhHHHHHHHHHHHHHh
Q 004132 91 KDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISD--NNPMVVANAVAALAEIEE 149 (772)
Q Consensus 91 ~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~D--~d~~Vv~~av~aL~eI~~ 149 (772)
.+.+..+|..||..+..+++...+.... ..+...+.+.+.| +.......|+..|.++..
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4568899999999999999886554322 1345555555554 556788999999998854
No 266
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=42.11 E-value=1.2e+02 Score=26.54 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=40.3
Q ss_pred EEEEEEeeeCCeeEEEEEEEecCCCCccccceeecc---CccCcccCCCCCCCcCCCCCeeeEEEeee
Q 004132 648 QIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNK---NTFGLAAGGALQVPQLQPGTSGRTLLPMV 712 (772)
Q Consensus 648 ~i~~~~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~---n~fgl~~~~~~~~~~l~p~~~~~~~~~l~ 712 (772)
+|++.-...+......++++|.+..+. .|.++..+ ..|.+.|. -..|.||++.++.+-+.
T Consensus 10 ~ldFG~v~~g~~~~~~v~l~N~s~~p~-~f~v~~~~~~~~~~~v~~~----~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 10 ELDFGNVFVGQTYSRTVTLTNTSSIPA-RFRVRQPESLSSFFSVEPP----SGFLAPGESVELEVTFS 72 (102)
T ss_pred EEEeeEEccCCEEEEEEEEEECCCCCE-EEEEEeCCcCCCCEEEECC----CCEECCCCEEEEEEEEE
Confidence 345554455667789999999999874 56665544 23333332 12799999988888776
No 267
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=41.36 E-value=2.1e+02 Score=25.80 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=37.8
Q ss_pred CcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC
Q 004132 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI 73 (772)
Q Consensus 22 ~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I 73 (772)
......-....++.+...+++-+--++..+.|=++++||.+.-.||..|=.+
T Consensus 13 ~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~l 64 (115)
T cd00197 13 NMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYC 64 (115)
T ss_pred CCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3344444455666666666777777889999999999999988888877554
No 268
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=41.13 E-value=5.5e+02 Score=30.76 Aligned_cols=134 Identities=22% Similarity=0.177 Sum_probs=81.0
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCC--ChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 004132 49 NTFVKDSQDPNPLIRALAVRTMGCI--RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (772)
Q Consensus 49 Ntl~kDl~~~np~iralALrtl~~I--~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~ 126 (772)
.++.|-+-+..+++++=||-.+|-. ++.+=++...-.+..-+.+++.-+|-.|+++++-.|.-.. -+ +....|.
T Consensus 418 ~qldkylys~~~~ikaGaLLgigi~~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq--~e--~V~~lL~ 493 (878)
T KOG2005|consen 418 EQLDKYLYSDESYIKAGALLGIGISNSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQ--RE--EVLELLS 493 (878)
T ss_pred HHHHHHhhcCCchhhhccceeeeeeccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCc--hH--HHHHHHh
Confidence 5788888888889999888766543 4555566655666777788999999999999999885322 11 2445777
Q ss_pred HhhcCCChh--HHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhh--cCChhHHHHHHHHHhcc
Q 004132 127 DLISDNNPM--VVANAVAALAEIEENSSRPIFEITSHTLSKLLTALN--ECTEWGQVFILDALSRY 188 (772)
Q Consensus 127 ~lL~D~d~~--Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~--~~~ew~qv~iL~~L~~~ 188 (772)
.++.|.++. |++-|-.+|.-|.-.+|.. ++....+..+...=. .-+.|.+--.|-+=..|
T Consensus 494 Pi~~d~~~~~ev~~~aslsLG~IfvGscn~--dvts~ilqtlmekse~El~d~~~RFL~LGL~llf 557 (878)
T KOG2005|consen 494 PIMFDTKSPMEVVAFASLSLGMIFVGSCNE--DVTSSILQTLMEKSETELEDQWFRFLALGLALLF 557 (878)
T ss_pred HHhcCCCCchhHHHHHHhhcceeEEecCCh--HHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHH
Confidence 888887766 4443333333333222221 222223333332211 13668776655554444
No 269
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=41.06 E-value=39 Score=31.32 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc
Q 004132 75 VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL 115 (772)
Q Consensus 75 ~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~ 115 (772)
++..+..++..|.+-|+|++|+|+.||.-++-.+.+..++.
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD 72 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH
Confidence 44556677777889999999999999999998888776643
No 270
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=40.70 E-value=8.2e+02 Score=34.19 Aligned_cols=267 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc--------c--ccccchHHHHHHh-hcC
Q 004132 65 LAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE--------L--VEDRGFLESLKDL-ISD 131 (772)
Q Consensus 65 lALrtl~~I~--~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~--------~--~~~~~~~~~L~~l-L~D 131 (772)
+|.++++.+. .......+-..+...+...++-+||.|+.++..+++..+- + +.. ....+..+ +.|
T Consensus 463 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~--vl~~ll~~aia~ 540 (2341)
T KOG0891|consen 463 LAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKE--VLSALLTVAIAD 540 (2341)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHH--HHHHHHHHhccC
Q ss_pred CChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCH----HHHHHHHHHHhHhh
Q 004132 132 NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA----REAENIVERVTPRL 207 (772)
Q Consensus 132 ~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~----~e~~~il~~v~~~L 207 (772)
.+|.++......+. .+-.........++.++.++.+..=-.|......+.+..-.++ .......-....-+
T Consensus 541 ~~~~i~~~v~~~l~-----~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l 615 (2341)
T KOG0891|consen 541 TDPDIRIRVLSSLN-----ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTEL 615 (2341)
T ss_pred CCcchhhhHHhhhc-----cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchh
Q ss_pred cCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhChhhhhhhcceeeecc
Q 004132 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKY 286 (772)
Q Consensus 208 ~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~ 286 (772)
..++.+++-+-.-.-+..+- ...+..+.....++...+...+ ..++.+.-.++.++..|++..-.......+.++++.
T Consensus 616 ~~sg~~r~~~~~a~~~~~~i-~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~ 694 (2341)
T KOG0891|consen 616 EFSGMARTKEESAKLLCELI-ISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLI 694 (2341)
T ss_pred hhcchHHhHHHHHHHhhHHH-HHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHH
Q ss_pred CCc------HhHHHHHHHHHHHhcccccH--------HHHHHHHHHhh-hhccHHHHHHHHHHHHHHH
Q 004132 287 NDP------IYVKMEKLEIMIKLASDRNI--------DQVLLEFKEYA-TEVDVDFVRKAVRAIGRCA 339 (772)
Q Consensus 287 ~d~------~~Ik~~kL~lL~~L~n~~Nv--------~~Il~EL~~y~-~~~d~~~~~~~v~aIg~la 339 (772)
.+. ...|+-++..+.+++...-+ ..+++-|...+ ++....+++.+++.+|.++
T Consensus 695 ~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 695 IKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred HHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
No 271
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=40.51 E-value=2e+02 Score=25.29 Aligned_cols=59 Identities=15% Similarity=0.352 Sum_probs=39.2
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Q 004132 318 EYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (772)
Q Consensus 318 ~y~~~~d~~~~~~~v~aIg~la~k~~----~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~ 378 (772)
+|+...+ +-+.+++..+-..+..+. ..++.|+.++-+++..+.+|+..| +.++..|+.+
T Consensus 10 ~f~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E-~~RL~~iL~~ 72 (93)
T cd00238 10 EFVDASD-EERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKE-LARLERLLEK 72 (93)
T ss_pred HHhccch-hHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHH-HHHHHHHHhc
Confidence 4444333 335556665555554442 456788998888888888888888 5677778776
No 272
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=40.31 E-value=2.4e+02 Score=32.25 Aligned_cols=162 Identities=16% Similarity=0.154 Sum_probs=81.5
Q ss_pred CCCChHHHHHHHHHHHHHHhhcccc---------ccc--cchHHHHHHh-hcCCChhHHHHHHHHHHHHHhhCCCCcccc
Q 004132 91 KDDDPYVRKTAAICVAKLYDINAEL---------VED--RGFLESLKDL-ISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (772)
Q Consensus 91 ~d~~pyVRK~Aa~~l~kl~~~~p~~---------~~~--~~~~~~L~~l-L~D~d~~Vv~~av~aL~eI~~~~~~~~~~l 158 (772)
.+-..-||..|..|+..+.+.-|.- +++ ++=.+.|..| |+|.++-..+.|+-.+..|.+.+.
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk------ 79 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSK------ 79 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhH------
Confidence 3455678999998888776543321 111 0112334333 789999999999988888765431
Q ss_pred cHHHHHHHHHHh-hcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHH
Q 004132 159 TSHTLSKLLTAL-NECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRN 237 (772)
Q Consensus 159 ~~~~~~~Ll~~L-~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~ 237 (772)
..+..-+..= ..++||.-...-.++..| .++ +..+-....+-|+-.++||+-.+....+-....-.
T Consensus 80 --~fls~a~~~~~~~ftpf~v~~a~si~~~~---------r~l--~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~ 146 (728)
T KOG4535|consen 80 --QFLSVAEDTSDHAFTPFSVMIACSIRELH---------RCL--LLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLS 146 (728)
T ss_pred --HHHHHHhccCCcCCCchHHHHHHHHHHHH---------HHH--HHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHH
Confidence 0111111100 124555432221111111 111 01112234456677777777654321111111112
Q ss_pred HHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhC
Q 004132 238 LCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRR 271 (772)
Q Consensus 238 l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~ 271 (772)
+..+..+-+-.++ ++|++++.-+|-.+..|+..+
T Consensus 147 ~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 147 LLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 2223333233345 589999999999998887554
No 273
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=40.00 E-value=38 Score=30.05 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=32.2
Q ss_pred CeeEEEEEEEecCCCCccccceeecc-CccCcccCCCCCCCcCCCCCeeeEEEeee
Q 004132 658 GQVFYSMLFENNTQTPLDGFMIQFNK-NTFGLAAGGALQVPQLQPGTSGRTLLPMV 712 (772)
Q Consensus 658 ~~~~~~~~~tN~~~~~~~~f~~q~n~-n~fgl~~~~~~~~~~l~p~~~~~~~~~l~ 712 (772)
....-.++++|.+..++ -|.+.-+. +.|.+.|. ..-|.||++..+.|-+.
T Consensus 18 ~~~~~~l~l~N~s~~~i-~fKiktt~~~~y~v~P~----~G~i~p~~~~~i~I~~~ 68 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPI-AFKIKTTNPNRYRVKPS----YGIIEPGESVEITITFQ 68 (109)
T ss_dssp S-EEEEEEEEE-SSSEE-EEEEEES-TTTEEEESS----EEEE-TTEEEEEEEEE-
T ss_pred ceEEEEEEEECCCCCcE-EEEEEcCCCceEEecCC----CEEECCCCEEEEEEEEE
Confidence 35678889999998864 46666655 45666664 24689999988888544
No 274
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=39.56 E-value=46 Score=23.33 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=25.5
Q ss_pred cchHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004132 119 RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (772)
Q Consensus 119 ~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~ 148 (772)
.+.++.|..+|...++.++..|+.+|..|+
T Consensus 11 ~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 11 AGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 356788999999889999999999998764
No 275
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=38.45 E-value=3.1e+02 Score=28.04 Aligned_cols=43 Identities=23% Similarity=0.426 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHh----hhhhHHHHHHHH
Q 004132 311 QVLLEFKEYATEVDVDFVRKAVRAIGRCAIK----LERAAERCISVL 353 (772)
Q Consensus 311 ~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k----~~~~~~~~vd~L 353 (772)
.++.||..|++.++..+....+..+.++|+. +|.+-+..++.+
T Consensus 3 ~~l~~L~~fi~~~~~~~~~~~~~~lvk~al~lL~~lPaaR~AVley~ 49 (213)
T PF14837_consen 3 NLLDELKSFIRGVRPCYSNKSVEDLVKCALSLLRSLPAARDAVLEYF 49 (213)
T ss_pred hHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 5788999999888877766666667677764 344444444433
No 276
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=38.42 E-value=75 Score=32.90 Aligned_cols=96 Identities=10% Similarity=0.099 Sum_probs=53.0
Q ss_pred CCCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeecc---CccCcccCCCCCCC---cCCCCCeeeEEEeeeecC-
Q 004132 644 GQGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFNK---NTFGLAAGGALQVP---QLQPGTSGRTLLPMVLFQ- 715 (772)
Q Consensus 644 ~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~---n~fgl~~~~~~~~~---~l~p~~~~~~~~~l~~~~- 715 (772)
..|+.++++ +...++.-...++++|.+..+ +.+|.-. +.-+ ....+...| .|+||++..+.+-....+
T Consensus 21 ~A~v~l~~TRvIy~~~~~~~si~i~N~~~~p---~LvQswv~~~~~~~-~~~pFivtPPlfrl~p~~~q~lRI~~~~~~L 96 (229)
T PRK15211 21 MAAFVLNGTRFIYDEGRKNISFEVTNQADQT---YGGQVWIDNTTQGS-STVYMVPAPPFFKVRPKEKQIIRIMKTDSAL 96 (229)
T ss_pred eEEEEECceEEEEcCCCceEEEEEEeCCCCc---EEEEEEEecCCCCC-ccCCEEEcCCeEEECCCCceEEEEEECCCCC
Confidence 356777765 444566677888888988765 5555422 1001 001112223 788998887776543221
Q ss_pred C-------------CCCC---CCCcchhhhhhcCCCCeEEEeecc
Q 004132 716 N-------------MSAG---PPSSLLQVAVKNNQQPVWYFNDKI 744 (772)
Q Consensus 716 ~-------------~~~~---~~~~~lqvAik~n~~~v~yf~~~~ 744 (772)
| ..+. ...+.||+|+++.+. +||=--.+
T Consensus 97 P~DRESlf~lnv~~IP~~~~~~~~n~l~iair~~iK-LfyRP~~L 140 (229)
T PRK15211 97 PKDRESLFWLNVQEIPPKPKASEGNVLAVALNTQVK-LIYRPKAL 140 (229)
T ss_pred CCCceEEEEEEEEEcCCCCCccccceEEEEEEeeee-eEEcchhc
Confidence 0 0010 113458999999887 77754333
No 277
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=38.03 E-value=3.6e+02 Score=26.83 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHH
Q 004132 193 AREAENIVERVTPRLQHANCAVVLSAVKMILQ 224 (772)
Q Consensus 193 ~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~ 224 (772)
.+-...++..+.+++.|.++.|...+.-++..
T Consensus 140 ~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~ 171 (182)
T PF13251_consen 140 PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGA 171 (182)
T ss_pred HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 45566778888899999999888888776654
No 278
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=37.27 E-value=2.1e+02 Score=26.47 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHhh
Q 004132 328 VRKAVRAIGRCAIKL-ERAAERCISVLLELIKI 359 (772)
Q Consensus 328 ~~~~v~aIg~la~k~-~~~~~~~vd~Ll~ll~~ 359 (772)
++++...|..++.+. |..-..+++-+++++..
T Consensus 5 ~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~ 37 (148)
T PF08389_consen 5 RNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS 37 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc
Confidence 344444455555442 33223344444444443
No 279
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=36.88 E-value=73 Score=32.99 Aligned_cols=97 Identities=10% Similarity=0.130 Sum_probs=53.0
Q ss_pred CCCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeeccCccCcccCCC-CCCC---cCCCCCeeeEEEeeeecCC--
Q 004132 644 GQGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGA-LQVP---QLQPGTSGRTLLPMVLFQN-- 716 (772)
Q Consensus 644 ~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~fgl~~~~~-~~~~---~l~p~~~~~~~~~l~~~~~-- 716 (772)
..|+.+.++ +...+++-...++++|.+..+ +.+|.-..-.+-.+..+ ...| .|+||++..+.+-.....|
T Consensus 23 ~a~v~l~~tRvi~~~~~~~~si~v~N~~~~p---~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~~lp~d 99 (230)
T PRK09918 23 AAGMVPETSVVIVEESDGEGSINVKNTDSNP---ILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKSGSPLN 99 (230)
T ss_pred EeeEEEccEEEEEECCCCeEEEEEEcCCCCc---EEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECCCCCCC
Confidence 356777765 333456667888889988765 34444221111112222 2233 8889998877765432111
Q ss_pred -----------CCC-CCCCcchhhhhhcCCCCeEEEeecc
Q 004132 717 -----------MSA-GPPSSLLQVAVKNNQQPVWYFNDKI 744 (772)
Q Consensus 717 -----------~~~-~~~~~~lqvAik~n~~~v~yf~~~~ 744 (772)
..+ ....+.||+|+++++. +||=--.+
T Consensus 100 rEs~f~l~v~~IP~~~~~~~~l~ia~r~~ik-lfyRP~~l 138 (230)
T PRK09918 100 TEHLLRVSFEGVPPKPGGKNKVVMPIRQDLP-VLIQPAAL 138 (230)
T ss_pred eeEEEEEEEEEcCCCCCCCCEEEEEEEeEEE-EEEeCCCC
Confidence 001 1123458899988887 77744333
No 280
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=36.84 E-value=1.2e+02 Score=26.03 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhccccccccchHHH---HHHhhcCCChhHHHHHHHHH
Q 004132 79 TEYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAELVEDRGFLES---LKDLISDNNPMVVANAVAAL 144 (772)
Q Consensus 79 ~~~l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~---L~~lL~D~d~~Vv~~av~aL 144 (772)
-..+..|....+.+ .+.-||.....|+.++.....+.+.. ||... +.....|.+..++..|...+
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~S-GW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKS-GWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34556666666544 78899999999999999988877764 78544 44455677777777776554
No 281
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=36.63 E-value=75 Score=34.93 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=34.0
Q ss_pred EEEEeeeCCeeEEEEEEEecCCCCccccceee------ccCccCcc---cCC-----CCCC---CcCCCCCeeeEEEee
Q 004132 650 GAELTRQDGQVFYSMLFENNTQTPLDGFMIQF------NKNTFGLA---AGG-----ALQV---PQLQPGTSGRTLLPM 711 (772)
Q Consensus 650 ~~~~~~~~~~~~~~~~~tN~~~~~~~~f~~q~------n~n~fgl~---~~~-----~~~~---~~l~p~~~~~~~~~l 711 (772)
++.|.-.+..+.+++++||++..++.-=.+|. |..-+.-. |.. .+.+ .+++||++.++++-+
T Consensus 255 ~A~Y~vpgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V~a 333 (381)
T PF04744_consen 255 DATYRVPGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAPGETRTLTVEA 333 (381)
T ss_dssp EEEEESSSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-TT-EEEEEEEE
T ss_pred ccEEecCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCCCceEEEEEEe
Confidence 45565556789999999999998876544333 33222111 110 1112 289999999888865
No 282
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=36.60 E-value=90 Score=27.99 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHH-----HHHHHHH--HhhccchhHHHHHHHHHHHHHhCcccHHHH
Q 004132 327 FVRKAVRAIGRCAIKLERAAERC-----ISVLLEL--IKIKVNYVVQEAIIVIKDIFRRYPNTYESI 386 (772)
Q Consensus 327 ~~~~~v~aIg~la~k~~~~~~~~-----vd~Ll~l--l~~~~~~v~~e~i~~l~~i~~~~p~~~~~i 386 (772)
|++.+|+.||.++-+-+..-+.. +..+++. +.....|+++=++..+|.++..+++.++.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57778888888776544332222 2333333 223456788888888888888888766543
No 283
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=36.57 E-value=1.6e+03 Score=32.68 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhc---------CCChhHHHHHHHHHHHH
Q 004132 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS---------DNNPMVVANAVAALAEI 147 (772)
Q Consensus 77 ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~---------D~d~~Vv~~av~aL~eI 147 (772)
.....+..++..-|.++++.||+.+.-++..+.....-.+. ++.+.++++|. -..-.++..-+.++...
T Consensus 1122 ~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~--~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC 1199 (3550)
T KOG0889|consen 1122 KSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVV--KLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFC 1199 (3550)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHH
Confidence 34566677788889999999999999999998876532222 26777777661 11222333344444443
Q ss_pred HhhCCCCcccccHHHHH--HHHHHhhcCChhHHHH
Q 004132 148 EENSSRPIFEITSHTLS--KLLTALNECTEWGQVF 180 (772)
Q Consensus 148 ~~~~~~~~~~l~~~~~~--~Ll~~L~~~~ew~qv~ 180 (772)
... ++..|+.....++ +.+..|.+.++|.-.-
T Consensus 1200 ~~l-~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~ 1233 (3550)
T KOG0889|consen 1200 LSL-GPCLFDFTEELYRLKRFLIALADAEEDELAT 1233 (3550)
T ss_pred HHc-CCcccCchHHHHHHHHHHHHhhhhhhhhhhh
Confidence 333 3344555443333 4555555555554333
No 284
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=36.09 E-value=52 Score=36.75 Aligned_cols=68 Identities=24% Similarity=0.261 Sum_probs=54.0
Q ss_pred HHHHHHhhhCC-CChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 004132 82 LCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (772)
Q Consensus 82 l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~~p~~---~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~ 149 (772)
+..-+.++|.. .+|.+---|+.=++...+.+|+- ++.-|-.+.+-+||+.+||.|..+|+.|+..+.-
T Consensus 367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 34456666665 45999999999999999999974 4445556888999999999999999998877643
No 285
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.78 E-value=84 Score=33.83 Aligned_cols=65 Identities=25% Similarity=0.321 Sum_probs=42.9
Q ss_pred HHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc--ccchHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 004132 84 DPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE--DRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 84 ~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~--~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~ 150 (772)
..|...+.+.+|-|||.|+.-+.-+-----.... ....++.+.+|+.|.++ ..-|+.++..+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 3478899999999999999665544321000000 01246778899999998 55666777777654
No 286
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=35.42 E-value=6.3e+02 Score=27.63 Aligned_cols=87 Identities=13% Similarity=0.133 Sum_probs=42.3
Q ss_pred HHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHH-HHHHHHHHHhhhccccCCHHHHHHH------Hh
Q 004132 356 LIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPE-AKASMIWIIGEYAERIDNADELLES------FL 428 (772)
Q Consensus 356 ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~-a~~~~iwilGEy~~~i~~~~~~L~~------l~ 428 (772)
++.-...|+..+-|..=.+.+.++ .+ .++..|.+++.. .+|. ..++++.=+|.|....+...++|.+ +.
T Consensus 330 ~l~wSp~H~~~dFWs~N~d~l~kd--ny-~i~k~L~~~lq~-n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im 405 (432)
T COG5231 330 RLEWSPYHHKKDFWSTNLDMLIKD--NY-EIVKVLKKYLQS-NNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIM 405 (432)
T ss_pred cccCCCcccccCchhhhHHHHhhh--hH-HHHHHHHHHHhc-CCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHH
Confidence 344456677777776544444332 12 356677777654 2232 2344444455555444333333321 12
Q ss_pred hhCCCCCHHHHHHHHHHH
Q 004132 429 ESFPEEPAQVQLQLLTAT 446 (772)
Q Consensus 429 ~~f~~e~~~vq~~lLta~ 446 (772)
+-....+++||..+|.|+
T Consensus 406 ~L~nh~d~~VkfeAl~a~ 423 (432)
T COG5231 406 NLINHDDDDVKFEALQAL 423 (432)
T ss_pred HHhcCCCchhhHHHHHHH
Confidence 222334566666666654
No 287
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=35.26 E-value=1.1e+02 Score=30.11 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC--CChHHHHHH
Q 004132 24 ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRKTA 101 (772)
Q Consensus 24 ~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d--~~pyVRK~A 101 (772)
+.|.+.+-+ ..+...+|+.. ..|.+-..-.|+.-++-|..-|..-...+..+. ..+|.. .++.||+.|
T Consensus 22 eek~llW~~-R~~~~~~p~aL----~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~a-----LeLL~~~f~d~~VR~yA 91 (171)
T cd00872 22 EDKELLWKL-RHECRKKPQAL----PKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQA-----LELLDCNFPDEHVREFA 91 (171)
T ss_pred HHHHHHHHH-HHHHhhCcHHH----HHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHH-----HHHCCCcCCCHHHHHHH
Confidence 467777776 44445557643 344455566777777777777766543333322 233333 568889888
Q ss_pred HHHHHHHHhhccccccccchHHHHHHhhc
Q 004132 102 AICVAKLYDINAELVEDRGFLESLKDLIS 130 (772)
Q Consensus 102 a~~l~kl~~~~p~~~~~~~~~~~L~~lL~ 130 (772)
+.++-++ .++.+.. ++..|.+.|+
T Consensus 92 V~~L~~~---sd~eL~~--yL~QLVQaLK 115 (171)
T cd00872 92 VRCLEKL---SDDELLQ--YLLQLVQVLK 115 (171)
T ss_pred HHHHHhC---CHHHHHH--HHHHHHHHHH
Confidence 8877664 3444443 7777777776
No 288
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=35.20 E-value=75 Score=33.04 Aligned_cols=93 Identities=20% Similarity=0.315 Sum_probs=55.5
Q ss_pred CCCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeeccCc------c-CcccCCC-CCCC---cCCCCCeeeEEEee
Q 004132 644 GQGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNT------F-GLAAGGA-LQVP---QLQPGTSGRTLLPM 711 (772)
Q Consensus 644 ~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~------f-gl~~~~~-~~~~---~l~p~~~~~~~~~l 711 (772)
..|+.++++ +...+++-...+++.|.+..+ +.+|..... . +..+..+ ...| .|+||+.....|-.
T Consensus 25 ~A~v~l~~TRvIy~~~~~~~sv~l~N~~~~p---~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~ 101 (236)
T PRK11385 25 QAGVVVGGTRFIFPADRESISILLTNTSQES---WLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLR 101 (236)
T ss_pred eeeEEeCceEEEEcCCCceEEEEEEeCCCCc---EEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEE
Confidence 367777766 445567778899999998864 777763310 0 1111122 2234 78899988777654
Q ss_pred eecC--C-------------CCCC-CCCcchhhhhhcCCCCeEEE
Q 004132 712 VLFQ--N-------------MSAG-PPSSLLQVAVKNNQQPVWYF 740 (772)
Q Consensus 712 ~~~~--~-------------~~~~-~~~~~lqvAik~n~~~v~yf 740 (772)
...+ | ..+. ...+.||+|+++.+. +||=
T Consensus 102 ~~~~~LP~DRESlf~lnv~~IPp~~~~~n~L~iair~riK-LFyR 145 (236)
T PRK11385 102 TESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFK-LFWR 145 (236)
T ss_pred CCCCCCCCCceEEEEEEEEecCCCcCCCceEEEEEEeeEE-EEEc
Confidence 4221 1 0011 112459999999887 8874
No 289
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=35.05 E-value=1.1e+02 Score=31.65 Aligned_cols=97 Identities=12% Similarity=0.161 Sum_probs=56.2
Q ss_pred CCCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeecc---CccCcccCCC-CCCC---cCCCCCeeeEEEeeeecC
Q 004132 644 GQGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFNK---NTFGLAAGGA-LQVP---QLQPGTSGRTLLPMVLFQ 715 (772)
Q Consensus 644 ~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~---n~fgl~~~~~-~~~~---~l~p~~~~~~~~~l~~~~ 715 (772)
..|+.+.++ +...++.-...+++.|.+..+ +.+|.-. +. ...+..+ ...| .|+||++..+.|-.....
T Consensus 18 ~A~i~l~~TRvI~~~~~~~~si~i~N~~~~p---~LvQsWv~~~~~-~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~~ 93 (226)
T PRK15295 18 HASIVVGGTRLVFDGNNDESSINVENKDSKA---NLVQSWLSVVDP-QVTNKQAFIITPPLFRLDAGQKNSIRVIRSGAP 93 (226)
T ss_pred cccEEeCceEEEEeCCCceeEEEEEeCCCCc---EEEEEEEeCCCC-CCCCCCCEEEcCCeEEECCCCceEEEEEECCCC
Confidence 467777766 444566678888889987764 5566321 11 1112222 2233 788998877776543211
Q ss_pred -CC----------CCCC------CCcchhhhhhcCCCCeEEEeeccc
Q 004132 716 -NM----------SAGP------PSSLLQVAVKNNQQPVWYFNDKIS 745 (772)
Q Consensus 716 -~~----------~~~~------~~~~lqvAik~n~~~v~yf~~~~p 745 (772)
|. .+.+ ..+.||+|+++.+. +||--..++
T Consensus 94 LP~DrEslf~lnv~~IP~~~~~~~~n~l~iair~rIK-LFyRP~~L~ 139 (226)
T PRK15295 94 LPADRESMYWLNIKGIPSIDDNASANRVEISINTQIK-LIYRPPALT 139 (226)
T ss_pred CCCCceEEEEEEEEEcCCCCCcCccceEEEEeeeeee-EEEchhhcC
Confidence 10 0011 12459999999997 888765554
No 290
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=34.68 E-value=1.5e+02 Score=28.55 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=8.0
Q ss_pred CChHHHHHHHHHHHH
Q 004132 93 DDPYVRKTAAICVAK 107 (772)
Q Consensus 93 ~~pyVRK~Aa~~l~k 107 (772)
.++.||+-|+.++-+
T Consensus 83 ~~~~vr~yAv~~L~~ 97 (152)
T cd00864 83 PDPVVRQYAVRVLES 97 (152)
T ss_pred CCHHHHHHHHHHHHh
Confidence 335666665555544
No 291
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=33.91 E-value=1.7e+02 Score=29.12 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC--CChHHHHHH
Q 004132 24 ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRKTA 101 (772)
Q Consensus 24 ~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d--~~pyVRK~A 101 (772)
+.|++.+-+--.+...+|+.. ..|.+-..=.|+....-|...|..=...+..+.+ .+|.. .++.||+-|
T Consensus 26 eek~llW~~R~~~l~~~p~aL----~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL-----~LL~~~~~~~~Vr~yA 96 (184)
T smart00145 26 EEKDLIWKFRHYYLTNNPKAL----PKFLLSVNWSDADEVAQALSLLKKWAPLDPEDAL-----ELLSPKFPDPFVRAYA 96 (184)
T ss_pred HHHHHHHHChHHHHhcChHHH----HHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHH-----HHhCccCCCHHHHHHH
Confidence 466666554323344556633 2223334445566556666666554332222221 12221 367777777
Q ss_pred HHHHHHHHhhccccccccchHHHHHHhhc
Q 004132 102 AICVAKLYDINAELVEDRGFLESLKDLIS 130 (772)
Q Consensus 102 a~~l~kl~~~~p~~~~~~~~~~~L~~lL~ 130 (772)
+.++-++ .++.+.. +++.|.+.|+
T Consensus 97 V~~L~~~---~d~~l~~--yLpQLVQaLr 120 (184)
T smart00145 97 VERLESA---SDEELLL--YLLQLVQALK 120 (184)
T ss_pred HHHHHhC---CHHHHHH--HHHHHHHHHH
Confidence 7665442 3333332 6666666664
No 292
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=33.89 E-value=1.6e+02 Score=29.07 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=14.6
Q ss_pred CHHHHhHHHHHhcCCChhhhHHHHHH
Q 004132 59 NPLIRALAVRTMGCIRVDKITEYLCD 84 (772)
Q Consensus 59 np~iralALrtl~~I~~~ei~~~l~~ 84 (772)
||.||.-|+|+|-+...+++.-|+-.
T Consensus 84 ~~~Vr~yAvr~L~~~~~e~l~~YlpQ 109 (175)
T cd00871 84 HPLVLQYAVRVLESYPVETVFFYIPQ 109 (175)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55566666666666555555555433
No 293
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=33.85 E-value=3.6e+02 Score=24.43 Aligned_cols=64 Identities=16% Similarity=0.302 Sum_probs=37.8
Q ss_pred HHHHHHhhcC-CCCHHHHhHHHHHhcCCC-----hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc
Q 004132 47 AVNTFVKDSQ-DPNPLIRALAVRTMGCIR-----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN 112 (772)
Q Consensus 47 ~iNtl~kDl~-~~np~iralALrtl~~I~-----~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~ 112 (772)
+..++.+-++ +.++..|+.|.-.++.+. .+++++.++..+.+....... .+.|.+|+..+++..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3455556665 556666666666666554 345555555555555544444 567777777777544
No 294
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=33.80 E-value=1.4e+02 Score=25.67 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=37.8
Q ss_pred CeEEEEEEeeeCCeeEEEEEEEecCCCCccccceeeccCccCcccCCCCCCC-cCCCCCeeeEEEeee
Q 004132 646 GLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVP-QLQPGTSGRTLLPMV 712 (772)
Q Consensus 646 gl~i~~~~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~fgl~~~~~~~~~-~l~p~~~~~~~~~l~ 712 (772)
.+++.+.+....+ .|.|+++|.+.... .+++--|.++=. .... .|.||++.+...++.
T Consensus 8 ~~~v~~~~~~~~g--~l~l~l~N~g~~~~---~~~v~~~~y~~~----~~~~~~v~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 8 APEVTARYDPATG--NLRLTLSNPGSAAV---TFTVYDNAYGGG----GPWTYTVAAGQTVSLTWPLA 66 (89)
T ss_pred CCEEEEEEECCCC--EEEEEEEeCCCCcE---EEEEEeCCcCCC----CCEEEEECCCCEEEEEEeec
Confidence 4678888776554 78888899877654 334344544211 1122 788999998888873
No 295
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=33.73 E-value=51 Score=31.40 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=36.6
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCC
Q 004132 49 NTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDD 93 (772)
Q Consensus 49 Ntl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~ 93 (772)
+.+..-|.++|+.|+.+||.|+..-+.+.+.+| -+.+.+++.|.
T Consensus 20 ~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY-~d~L~~Lldd~ 63 (141)
T PF07539_consen 20 DALLRLLSSRDPEVQKLALDCLLTWKDPYLTPY-KDNLENLLDDK 63 (141)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhH-HHHHHHHcCcc
Confidence 456677799999999999999999999988888 46777777764
No 296
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=33.42 E-value=60 Score=33.56 Aligned_cols=97 Identities=10% Similarity=0.145 Sum_probs=53.3
Q ss_pred CCCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeeccCcc--CcccC---CC-CCCC---cCCCCCeeeEEEeeee
Q 004132 644 GQGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTF--GLAAG---GA-LQVP---QLQPGTSGRTLLPMVL 713 (772)
Q Consensus 644 ~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~f--gl~~~---~~-~~~~---~l~p~~~~~~~~~l~~ 713 (772)
..|+.+.++ +...++.-...+++.|++..+ +.+|.=..-. ...|. .+ ...| .|.||+.....|-...
T Consensus 17 ~Agi~l~~TRvIy~~~~~~~si~i~N~~~~p---yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~ 93 (226)
T PRK15218 17 WSGIYIYGTRIIYPAQKKDITVQLMNDGKRS---SLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLA 93 (226)
T ss_pred eeeEEeCceEEEEcCCCcEEEEEEEcCCCCc---EEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC
Confidence 356777765 455567777888888888754 5666411000 01111 12 2223 7789987777665432
Q ss_pred cC--------------CCCCC----CCCcchhhhhhcCCCCeEEEeecc
Q 004132 714 FQ--------------NMSAG----PPSSLLQVAVKNNQQPVWYFNDKI 744 (772)
Q Consensus 714 ~~--------------~~~~~----~~~~~lqvAik~n~~~v~yf~~~~ 744 (772)
++ .+.+. ...+.||+|+++.+. +||=-..+
T Consensus 94 ~~LP~DRESlfwlnv~~IPp~~~~~~~~n~L~iairtrIK-LfYRP~~L 141 (226)
T PRK15218 94 NNLPGDRESLFYLNVLDIPPNSDENKDKNIIKFALQNRIK-LIYRPPGV 141 (226)
T ss_pred CCCCcceeEEEEEEEEEcCCCCCCcCcCcEEEEEeeeEEE-EEEccccc
Confidence 21 01110 012459999999887 88744333
No 297
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=33.40 E-value=1.1e+02 Score=31.57 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=52.4
Q ss_pred CCCCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeecc-CccCcccCCCCCCC---cCCCCCeeeEEEeeeecCC-
Q 004132 643 TGQGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFNK-NTFGLAAGGALQVP---QLQPGTSGRTLLPMVLFQN- 716 (772)
Q Consensus 643 ~~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~-n~fgl~~~~~~~~~---~l~p~~~~~~~~~l~~~~~- 716 (772)
...|+.++++ +...++.-...++++|.+...- ..+|.=. +.=|-....+...| .|+||+.....|-....+.
T Consensus 25 ~~Agi~l~~TRvIy~~~~~~~sv~i~N~~~~~p--~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~lP 102 (228)
T PRK15188 25 QAGGIALGATRVIYPQGSKQTSLPIINSSASNV--FLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGPSLP 102 (228)
T ss_pred hcceEEECcEEEEEcCCCceEEEEEEeCCCCcc--EEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCCCCC
Confidence 4467777766 4445666788888889875421 2233211 00011111122233 7889988777765432211
Q ss_pred -------------CCCCC----CCcchhhhhhcCCCCeEEEeecc
Q 004132 717 -------------MSAGP----PSSLLQVAVKNNQQPVWYFNDKI 744 (772)
Q Consensus 717 -------------~~~~~----~~~~lqvAik~n~~~v~yf~~~~ 744 (772)
..+.+ ..+.||+|+++.+. +||=-..+
T Consensus 103 ~DRESlf~lnv~~IP~~~~~~~~~n~l~ia~r~~IK-LFyRP~~l 146 (228)
T PRK15188 103 TDRESVFYLNSKAIPSVDKNKLTGNSLQIATQSVIK-LFIRPKNL 146 (228)
T ss_pred CCceEEEEEEEEecCCCCccccccceEEEEEeeeEE-EEECCccC
Confidence 11110 12358999999887 77743333
No 298
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=33.22 E-value=89 Score=34.26 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=36.3
Q ss_pred EEEeeeCCeeEEEEEEEecCCCCccc-------cceeeccC-ccCcccCCC-------CCC---CcCCCCCeeeEEEee
Q 004132 651 AELTRQDGQVFYSMLFENNTQTPLDG-------FMIQFNKN-TFGLAAGGA-------LQV---PQLQPGTSGRTLLPM 711 (772)
Q Consensus 651 ~~~~~~~~~~~~~~~~tN~~~~~~~~-------f~~q~n~n-~fgl~~~~~-------~~~---~~l~p~~~~~~~~~l 711 (772)
++|.-.+-.+.+++.+||++.+++.- .++ +|.| -+-..+.-+ +.+ .++.||++.++.+-.
T Consensus 275 a~Y~VPGR~l~~~~~VTN~g~~~vrlgEF~TA~vRF-lN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 275 ANYDVPGRALRVTMEITNNGDQVISIGEFTTAGIRF-MNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEA 352 (399)
T ss_pred cEEecCCcEEEEEEEEEcCCCCceEEEeEeecceEe-eCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEE
Confidence 44433455789999999999988753 333 3442 222222211 121 279999999888753
No 299
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.66 E-value=3.1e+02 Score=34.60 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=44.3
Q ss_pred CchhHHHHHHHHHHHHHhhChhhhhh--hcceee-eccCCcHhHHHHHHHHHHHhccc
Q 004132 252 AEPEIQYVALRNINLIVQRRPTILAH--EIKVFF-CKYNDPIYVKMEKLEIMIKLASD 306 (772)
Q Consensus 252 ~~~~iryvaL~~l~~i~~~~p~~~~~--~~~if~-~~~~d~~~Ik~~kL~lL~~L~n~ 306 (772)
-+|+||-+.+..|..=++.+|++|-. ++|.+= -+.|--..||++-+.+|..|-..
T Consensus 299 V~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 299 VDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred CchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 47999999999999999999998754 456553 34455578999999999998654
No 300
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=32.21 E-value=1.7e+02 Score=27.75 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=46.5
Q ss_pred EEEEEEeeeCCeeEEEEEEEecCCCCccccceeeccCccCcccCCCCCCCcCCCCCeeeEEEeeeec
Q 004132 648 QIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLF 714 (772)
Q Consensus 648 ~i~~~~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~fgl~~~~~~~~~~l~p~~~~~~~~~l~~~ 714 (772)
-+++...-..--+.+++.+.|.|...+.++.++|.. .-.|....-++.-.|.|++....+..+...
T Consensus 59 YaEA~v~v~q~DIvLDvllvNqT~~tLqNl~vElat-~gdLklve~p~~~tL~P~~~~~i~~~iKVs 124 (140)
T PF07718_consen 59 YAEAYVTVHQYDIVLDVLLVNQTNETLQNLTVELAT-LGDLKLVERPQPITLAPHGFARIKATIKVS 124 (140)
T ss_pred EEEEEEEEEeeeEEEEEEEEeCChhhhhcEEEEEEe-cCCcEEccCCCceeeCCCcEEEEEEEEEEE
Confidence 344444433446899999999999999999999887 334555444443378999888777666543
No 301
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=31.94 E-value=32 Score=30.69 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=38.5
Q ss_pred CCeeEEEEEEEecCCCCccccceeeccCcc---CcccCCC---CCCCcCCCCCeeeEEEeeeecC
Q 004132 657 DGQVFYSMLFENNTQTPLDGFMIQFNKNTF---GLAAGGA---LQVPQLQPGTSGRTLLPMVLFQ 715 (772)
Q Consensus 657 ~~~~~~~~~~tN~~~~~~~~f~~q~n~n~f---gl~~~~~---~~~~~l~p~~~~~~~~~l~~~~ 715 (772)
|..+.+.++|+|.+..++.+..+-+...+. |+..... .....|.||++.++.+.+.+..
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQ 78 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHS
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEcee
Confidence 667899999999999998886655543222 6543111 2345999999999999987665
No 302
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=31.92 E-value=1.2e+02 Score=31.12 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=32.9
Q ss_pred hhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 004132 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 88 ~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~ 150 (772)
....+.++-.|+.|+.+...-.+..+... .+.+.+..+|.|++..|.-+-==+|.++..+
T Consensus 125 a~~~~~~~w~rraaiv~~l~~~k~~~~~~---~if~i~E~~l~d~e~fV~KAigWaLrq~~k~ 184 (222)
T COG4912 125 ADAEEDNRWERRAAIVHQLVYKKKTLDLL---EIFEIIELLLGDKEFFVQKAIGWALRQIGKH 184 (222)
T ss_pred hccccchHHHHHHHHHHHHHHhcCccchh---HHHHHHHHHccChHHHHHHHHHHHHHHHHhh
Confidence 33344555666666655555444444333 2566666666666666655555556666653
No 303
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=31.73 E-value=1.8e+02 Score=26.93 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=39.0
Q ss_pred HHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhh
Q 004132 179 VFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQME 227 (772)
Q Consensus 179 v~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~ 227 (772)
.++++=++.....+..+..++++.+..+|++.++-|.+-|.++|-++..
T Consensus 19 gy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~ 67 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCE 67 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHh
Confidence 3555555555556778888999999999999999998999999987654
No 304
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=31.55 E-value=73 Score=33.12 Aligned_cols=85 Identities=21% Similarity=0.342 Sum_probs=50.5
Q ss_pred CCcHhHHHHHHHHHHHhc-ccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhH
Q 004132 287 NDPIYVKMEKLEIMIKLA-SDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVV 365 (772)
Q Consensus 287 ~d~~~Ik~~kL~lL~~L~-n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~ 365 (772)
+.+.+=++.+||.|.+|+ .+.|++-|+.. +-|. ..++.+++|.+++....+.+.
T Consensus 135 ~~~lSPqrlaLEaLcKLsV~e~NVDliLaT---------pp~s----------------RlE~l~~~L~r~l~~~e~~v~ 189 (257)
T PF12031_consen 135 HSPLSPQRLALEALCKLSVIENNVDLILAT---------PPFS----------------RLERLFHTLVRLLGMREDQVC 189 (257)
T ss_pred CCCCCHHHHHHHHHHHhheeccCcceeeeC---------CCHH----------------HHHHHHHHHHHHhccccchhH
Confidence 345678999999999996 67887776621 1121 134567788888887777766
Q ss_pred HHHHHH-HHHHHHhCcc------cHHHHHHHHHHhccc
Q 004132 366 QEAIIV-IKDIFRRYPN------TYESIIATLCESLDT 396 (772)
Q Consensus 366 ~e~i~~-l~~i~~~~p~------~~~~ii~~L~~~l~~ 396 (772)
.|-.++ +..+.+.... .+..+|..|..++|+
T Consensus 190 REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~ 227 (257)
T PF12031_consen 190 REFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIED 227 (257)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHH
Confidence 665443 3334332211 123345555555553
No 305
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=31.37 E-value=7.2e+02 Score=27.09 Aligned_cols=190 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhhccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcc-cccHHHHHHHHHHhhhhcc
Q 004132 246 LVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLAS-DRNIDQVLLEFKEYATEVD 324 (772)
Q Consensus 246 L~~Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n-~~Nv~~Il~EL~~y~~~~d 324 (772)
+...++++...+-.+...+..|++.+-..+.+ ++.+....+..-+|.+|..++. .. ....+|+..+..-.-
T Consensus 32 ~l~~ls~~~~~~~~g~~l~~~iL~~~~k~lyr------~L~~~~~~~~~~~LrLL~~iv~f~~--g~~a~~v~~~fd~~~ 103 (330)
T PF11707_consen 32 LLKKLSSDLSFQSYGLELIRSILQNHLKLLYR------SLSSSKPSLTNPALRLLTAIVSFDG--GALAREVLRSFDFSL 103 (330)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHHH------HhCcCcHHHHHHHHHHHHHHHccCC--HHHHHHHHHhcCCch
Q ss_pred HHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhhccchhHHHHHH---HHHHHHHhCcccHHHHHHHHHHhcc
Q 004132 325 VDFVRKAVRAIGRCAIKL------ERAAERCISVLLELIKIKVNYVVQEAII---VIKDIFRRYPNTYESIIATLCESLD 395 (772)
Q Consensus 325 ~~~~~~~v~aIg~la~k~------~~~~~~~vd~Ll~ll~~~~~~v~~e~i~---~l~~i~~~~p~~~~~ii~~L~~~l~ 395 (772)
..|.+-+...-......- ++.-..+|+.++.++......+..+.+. .+..+++.-.+-...++..+.+.++
T Consensus 104 ~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~ 183 (330)
T PF11707_consen 104 KSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLK 183 (330)
T ss_pred hhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHH
Q ss_pred c--CChHHH-HHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCH----HHHHHHHHHHHHHhhc
Q 004132 396 T--LDEPEA-KASMIWIIGEYAERIDNADELLESFLESFPEEPA----QVQLQLLTATVKLFLK 452 (772)
Q Consensus 396 ~--~~~p~a-~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~----~vq~~lLta~~Kl~~~ 452 (772)
+ +.++.. |..=+.++||.. |+.+..-|..+.+ .+.-.+-.-+.+++..
T Consensus 184 ~~Vl~~~~v~r~~K~~~fn~~~---------L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 184 DKVLKDSSVSRSTKCKLFNEWT---------LSQLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHhccCCCCChhhhhhhcCHHH---------HHHHHHHhcccCCcccchHHHHHHHHHHHHhcC
No 306
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=31.18 E-value=1.3e+02 Score=31.61 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=37.6
Q ss_pred CCCCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeeccCccCcccCC-CCCCC---cCCCCCeeeEEEeee
Q 004132 643 TGQGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGG-ALQVP---QLQPGTSGRTLLPMV 712 (772)
Q Consensus 643 ~~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~fgl~~~~-~~~~~---~l~p~~~~~~~~~l~ 712 (772)
...|+.+.++ +...++.-...+++.|.+..+ +.+|.-....+-.... +...| .|.||+...+.+-..
T Consensus 38 a~Agi~l~~TRvIy~~~~~~~sl~i~N~~~~p---~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~ 109 (246)
T PRK15233 38 KYYGLRLGTTRVIYKEDAPSTSFWIMNEKEYP---ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPT 109 (246)
T ss_pred eeeeEEeCceEEEEeCCCcEEEEEEEcCCCCc---EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEEC
Confidence 3456777665 555566677888888876554 6666522111101111 22233 778998877766553
No 307
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.75 E-value=8.4e+02 Score=27.66 Aligned_cols=108 Identities=18% Similarity=0.287 Sum_probs=68.8
Q ss_pred cCCCCCCeEEEEEEeeeC-----CeeEEEEEEEecCCCCccccceeecc-Ccc--CcccCCCCCCC---cCCCCCeeeEE
Q 004132 640 PASTGQGLQIGAELTRQD-----GQVFYSMLFENNTQTPLDGFMIQFNK-NTF--GLAAGGALQVP---QLQPGTSGRTL 708 (772)
Q Consensus 640 ~~~~~~gl~i~~~~~~~~-----~~~~~~~~~tN~~~~~~~~f~~q~n~-n~f--gl~~~~~~~~~---~l~p~~~~~~~ 708 (772)
.++..+|+.|-+.|.+.+ +..++-++.-|++.+++.++.+|... |+. .|+|.+....| ++.|-.
T Consensus 471 ~vyd~~GfRILlhfaq~~~pg~sdV~v~vlsmlntap~pikdI~lq~avpk~mkvkLQp~sgteL~~Fspi~ppa----- 545 (594)
T KOG1086|consen 471 TVYDSNGFRILLHFAQSDMPGRSDVLVVVLSMLNTAPQPIKDIVLQLAVPKSMKVKLQPPSGTELPAFSPIMPPA----- 545 (594)
T ss_pred EEEccCCcEEEeeeccCCCCCCCceEEEEEEeecCCCcchhhheeeeccccceeeeccCCCcccCCCCCCCCChH-----
Confidence 357899999999999972 35688889999999999999999988 665 55665432222 333221
Q ss_pred EeeeecCCCCCCCCCcchhhhhhcCCC--Ce-EEEeeccccc-hhcccCCCCChhhHHHhccc
Q 004132 709 LPMVLFQNMSAGPPSSLLQVAVKNNQQ--PV-WYFNDKISLH-VLFTEDGRMERGSFLEVKTC 767 (772)
Q Consensus 709 ~~l~~~~~~~~~~~~~~lqvAik~n~~--~v-~yf~~~~p~~-~l~~~~g~~~~~~F~~~W~~ 767 (772)
.--||-.-.|-. .| .-|...+... -.|.|-|.+++--=++.|-+
T Consensus 546 ---------------aitqvlllanp~ke~vrlrykltf~~g~q~~~evgevdqfp~~e~~g~ 593 (594)
T KOG1086|consen 546 ---------------AITQVLLLANPHKEKVRLRYKLTFNQGGQPFSEVGEVDQFPPLEVWGA 593 (594)
T ss_pred ---------------HHHHHHHhcCccccceeEEEEEEeecCCccchhccccccCCCHHHhcc
Confidence 112333333322 11 3344444433 46788888877655677743
No 308
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=29.80 E-value=2.8e+02 Score=24.88 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCC
Q 004132 99 KTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS 152 (772)
Q Consensus 99 K~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~ 152 (772)
.....-+..+...+++...+ ....|.+-|.++|+-|+.-|+.+|..+.++.+
T Consensus 18 ~~~i~~i~d~~~~~~~~~~~--~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g 69 (115)
T cd00197 18 WPLIMEICDLINETNVGPKE--AVDAIKKRINNKNPHVVLKALTLLEYCVKNCG 69 (115)
T ss_pred HHHHHHHHHHHHCCCccHHH--HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 34444455555445554443 67888888899999999999998888777643
No 309
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=29.53 E-value=1.9e+02 Score=33.59 Aligned_cols=137 Identities=14% Similarity=0.198 Sum_probs=84.2
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC-ccc
Q 004132 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFE 157 (772)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~-~~~ 157 (772)
+.+++.++|.+++-.|.-.+..++..+.-.... -+-..++++.|..++..+|....++.+-.+..+..+.... .|+
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~ 511 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK 511 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh
Confidence 455688889888888887777776654322211 1122478899999999888888888888887665442211 233
Q ss_pred ccHH-HHHHHHHHhhcCChhHHHHHHHHHhccccCCHH--HH----------HHHHHHHhHhhcCCCHHHHHHH
Q 004132 158 ITSH-TLSKLLTALNECTEWGQVFILDALSRYKAADAR--EA----------ENIVERVTPRLQHANCAVVLSA 218 (772)
Q Consensus 158 l~~~-~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~--e~----------~~il~~v~~~L~~~n~aVv~ea 218 (772)
+..+ -+.+++...++++=-.|..++++|+.+...... +. +-+.+++...+...||.-..+.
T Consensus 512 ~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~ 585 (743)
T COG5369 512 FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEG 585 (743)
T ss_pred hHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhh
Confidence 3222 245666666665544699999999998753221 11 1234455555555666544444
No 310
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=29.41 E-value=1.1e+02 Score=32.19 Aligned_cols=97 Identities=12% Similarity=0.169 Sum_probs=53.9
Q ss_pred CCCeEEEEE-EeeeCCeeEEEEEEEecCCC-CccccceeeccCcc-CcccCC-CCCCC---cCCCCCeeeEEEeeee--c
Q 004132 644 GQGLQIGAE-LTRQDGQVFYSMLFENNTQT-PLDGFMIQFNKNTF-GLAAGG-ALQVP---QLQPGTSGRTLLPMVL--F 714 (772)
Q Consensus 644 ~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~-~~~~f~~q~n~n~f-gl~~~~-~~~~~---~l~p~~~~~~~~~l~~--~ 714 (772)
..|+.+.++ +...++.-...++++|++.. + +.+|.-.--. +-.... +...| .|.||+.....|-... +
T Consensus 25 ~Agi~l~~TRvIy~e~~~~~sv~v~N~~~~~p---~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~ 101 (257)
T PRK15274 25 HSAIVPDRTRVIFNGNENSITVTLKNGNATLP---YLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAA 101 (257)
T ss_pred eeeEEeCceEEEEeCCCceEEEEEEeCCCCCc---EEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCC
Confidence 456777765 55556777888888888765 3 4455411000 000001 22223 7889988777765332 1
Q ss_pred C-C----------CCCCC----CCcchhhhhhcCCCCeEEEeecc
Q 004132 715 Q-N----------MSAGP----PSSLLQVAVKNNQQPVWYFNDKI 744 (772)
Q Consensus 715 ~-~----------~~~~~----~~~~lqvAik~n~~~v~yf~~~~ 744 (772)
+ | +...+ ..+.||+|+++.+. +||=-..+
T Consensus 102 ~LP~DRESlFwlNv~eIPp~~~~~n~L~iairtrIK-LFYRP~~L 145 (257)
T PRK15274 102 SLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIK-FFYRPVAV 145 (257)
T ss_pred CCCCceeEEEEEEEEEcCCCCCcCceEEEEeeeeee-eEEccccc
Confidence 1 0 01111 13469999999997 88855444
No 311
>COG1470 Predicted membrane protein [Function unknown]
Probab=28.71 E-value=1.2e+02 Score=34.58 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=44.8
Q ss_pred CCeeEEEEEEEecCCCCccccceeeccCccCcccCC-CCCCCcCCCCCeeeEEEeeeec
Q 004132 657 DGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGG-ALQVPQLQPGTSGRTLLPMVLF 714 (772)
Q Consensus 657 ~~~~~~~~~~tN~~~~~~~~f~~q~n~n~fgl~~~~-~~~~~~l~p~~~~~~~~~l~~~ 714 (772)
|....+.+.+.|....+++++.+-+|- +-|....- ...+|.|+||++.++.+-+...
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~-PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP 453 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNG-PQGWEIEVDESTIPSLEPGESKTVSLTITVP 453 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecC-CccceEEECcccccccCCCCcceEEEEEEcC
Confidence 446788999999999999999998776 44655542 2468999999998888887643
No 312
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=28.66 E-value=5.1e+02 Score=31.09 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhc-CCChhHHHHHHHHHHHHH
Q 004132 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIE 148 (772)
Q Consensus 80 ~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~-D~d~~Vv~~av~aL~eI~ 148 (772)
.++-.-+......+++.+|+.+.--+.++....|+... ...++++|. ...+++.+.++.-+-+..
T Consensus 441 ~~~q~L~~i~~~~p~~~lR~~~~~ll~~iL~~~p~~~r----f~~i~dlLe~c~~~~~k~~~I~~lKd~i 506 (633)
T PF08568_consen 441 QFLQALLLISVYCPSPELRKIAFTLLTRILHLFPEETR----FKFIRDLLENCPFESLKASAIGWLKDEI 506 (633)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCcHhH----HHHHHHHHhcCCCHhHHHHHHHHHHHHH
Confidence 33333344455679999999999999999999998653 477788876 567888888888776643
No 313
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=28.61 E-value=1.2e+02 Score=30.68 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=46.5
Q ss_pred HhhcCCCCHHHHhHH-HHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc
Q 004132 52 VKDSQDPNPLIRALA-VRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED 118 (772)
Q Consensus 52 ~kDl~~~np~iralA-Lrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~ 118 (772)
.+=..|.|.-.|-.| +.++..+...+ .+.+...+..++.|++-+|+|...-++--+.+.+|+.+..
T Consensus 121 ~~W~~s~~~W~rR~ai~~~l~~~~~~~-~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~ 187 (208)
T cd07064 121 DEWSTDENFWLRRTAILHQLKYKEKTD-TDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRD 187 (208)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 333467777554444 44444444323 3566667888999999999999999999999999987664
No 314
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=28.05 E-value=1.6e+02 Score=30.48 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=53.3
Q ss_pred CCCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeecc--C-ccCcccCCC-CCCC---cCCCCCeeeEEEeeeecC
Q 004132 644 GQGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFNK--N-TFGLAAGGA-LQVP---QLQPGTSGRTLLPMVLFQ 715 (772)
Q Consensus 644 ~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~--n-~fgl~~~~~-~~~~---~l~p~~~~~~~~~l~~~~ 715 (772)
..|+.++++ +...++.-...++++|.+..+ +.+|.-. + --+..+..+ ...| .|+||++..+.|-....+
T Consensus 21 ~a~i~l~~TRvi~~~~~~~~sl~l~N~~~~p---~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~ 97 (227)
T PRK15299 21 AAGINIGTTRVIFHGDAKDASISISNSDNVP---YLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGGN 97 (227)
T ss_pred eeeEEECceEEEEeCCCcEEEEEEEeCCCCc---EEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCCC
Confidence 467777766 334456667888888977654 5556311 1 011222222 2233 788998877765433211
Q ss_pred -CC----------CCCCC------CcchhhhhhcCCCCeEEEeecc
Q 004132 716 -NM----------SAGPP------SSLLQVAVKNNQQPVWYFNDKI 744 (772)
Q Consensus 716 -~~----------~~~~~------~~~lqvAik~n~~~v~yf~~~~ 744 (772)
|. .+.+| .+.||+|+++.+. +||=--.+
T Consensus 98 lP~DrEslf~lnv~eIP~~~~~~~~n~l~iavr~riK-LfyRP~~l 142 (227)
T PRK15299 98 LPEDRESLYWLDIKSIPSSNPDNKHNTLMLAVKAEFK-LIYRPKAL 142 (227)
T ss_pred CCCcceEEEEEEeEecCCCCcccccceEEEEEeeeee-EEEccccc
Confidence 00 00111 2358999999997 88854333
No 315
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=28.00 E-value=5e+02 Score=24.20 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=14.8
Q ss_pred cCCchhHHHHHHHHHHHHHhhChh
Q 004132 250 LSAEPEIQYVALRNINLIVQRRPT 273 (772)
Q Consensus 250 ls~~~~iryvaL~~l~~i~~~~p~ 273 (772)
-+++|++++.||..+..++.....
T Consensus 47 ~~~n~~v~l~AL~lLe~~vkNcg~ 70 (133)
T smart00288 47 NNKNPHVALLALTLLDACVKNCGS 70 (133)
T ss_pred cCCCHHHHHHHHHHHHHHHHHCCH
Confidence 345666677777666666665433
No 316
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=27.69 E-value=6.1e+02 Score=31.29 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhh
Q 004132 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQM 226 (772)
Q Consensus 160 ~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~ 226 (772)
...+-+++..+..-++-.|..+|..+++.-.... ..++++.=|++++.+.+++-.+.
T Consensus 489 Q~~varliHLi~~~D~d~~~~iL~~~rk~~~~Gg----------~~ri~~TlP~LIf~~lkL~r~~~ 545 (762)
T PF03635_consen 489 QELVARLIHLIRSDDPDQQFEILNIARKHFGNGG----------PKRIRYTLPPLIFAALKLARRIK 545 (762)
T ss_dssp HHHHHHHHHHCTTSSHHHHHHHHHHHHHHHCTT-----------SSSHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC----------CceeeeeHHHHHHHHHHHHHHHH
Confidence 3445555555554455555555555554221100 01222333688888888886653
No 317
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=27.25 E-value=9.8e+02 Score=27.32 Aligned_cols=144 Identities=14% Similarity=0.108 Sum_probs=78.2
Q ss_pred HHHHHHHHhhh-----hccHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcc
Q 004132 311 QVLLEFKEYAT-----EVDVDFVRKAVRAIGRCAIKLERAAE----RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN 381 (772)
Q Consensus 311 ~Il~EL~~y~~-----~~d~~~~~~~v~aIg~la~k~~~~~~----~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~ 381 (772)
.+++.|++.+. +-|++....+..++..+++..+..+. -.++.++.+++....-|.......++-+....+.
T Consensus 356 ~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~ 435 (604)
T KOG4500|consen 356 DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY 435 (604)
T ss_pred HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH
Confidence 34556665542 23456666788888888875543322 3577888888888887777666665554332211
Q ss_pred c------HHHHHHHHHHhcccCCh----HHHHHHHHHHHhh--hccccCCH--HHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 004132 382 T------YESIIATLCESLDTLDE----PEAKASMIWIIGE--YAERIDNA--DELLESFLESFPEEPAQVQLQLLTATV 447 (772)
Q Consensus 382 ~------~~~ii~~L~~~l~~~~~----p~a~~~~iwilGE--y~~~i~~~--~~~L~~l~~~f~~e~~~vq~~lLta~~ 447 (772)
. ....+++|.+.-++-+. .+..+.+.|++-- |.+.+... .-.++..+.-|..++...|-..|.|+.
T Consensus 436 ~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~ 515 (604)
T KOG4500|consen 436 IACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALL 515 (604)
T ss_pred HHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 0 11223333333332222 2446778899876 54433211 112444444444455555666666666
Q ss_pred HHhhcCC
Q 004132 448 KLFLKKP 454 (772)
Q Consensus 448 Kl~~~~p 454 (772)
-+..+++
T Consensus 516 ~~~~~yl 522 (604)
T KOG4500|consen 516 STESKYL 522 (604)
T ss_pred HHHHHhc
Confidence 6555554
No 318
>PRK13266 Thf1-like protein; Reviewed
Probab=27.12 E-value=3.2e+02 Score=28.18 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=20.3
Q ss_pred HHHHHHHHH--HhhhhccHHHHHHHHHHHHHHH
Q 004132 309 IDQVLLEFK--EYATEVDVDFVRKAVRAIGRCA 339 (772)
Q Consensus 309 v~~Il~EL~--~y~~~~d~~~~~~~v~aIg~la 339 (772)
...+++||+ -++-....+|+.+.+.++|-+.
T Consensus 26 Yrrvv~ELLVElHLl~~n~~F~yDplfAlGlvt 58 (225)
T PRK13266 26 YRRVVDELLVELHLLSVNSDFKYDPLFALGLVT 58 (225)
T ss_pred HHHHHHHHHHHHHHHHhccCceeCchHHhhHHH
Confidence 345666665 3455667778888888777544
No 319
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=26.84 E-value=1.9e+02 Score=28.37 Aligned_cols=94 Identities=19% Similarity=0.141 Sum_probs=58.3
Q ss_pred CcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC--CChHHHH
Q 004132 22 NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD--DDPYVRK 99 (772)
Q Consensus 22 ~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d--~~pyVRK 99 (772)
..+.|++.+-+ ..+...+|+... .|.+-..=.|+..+.-|...|..-...+..+. ..+|.. .++.||+
T Consensus 27 ~~~ek~llW~~-R~~l~~~p~aL~----~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~a-----LeLL~~~f~~~~VR~ 96 (166)
T cd00870 27 TDEEKDLIWKF-RFYLTNNKKALT----KFLKSVNWSDEQEVKQALELMPKWAKIDIEDA-----LELLSPYFTNPVVRK 96 (166)
T ss_pred CHHHHHHHHHh-HHHHhhCcHHHH----HHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHH-----HHHcCccCCCHHHHH
Confidence 34578888885 555666777543 33333433566666677777766543333332 234433 6789999
Q ss_pred HHHHHHHHHHhhccccccccchHHHHHHhhc
Q 004132 100 TAAICVAKLYDINAELVEDRGFLESLKDLIS 130 (772)
Q Consensus 100 ~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~ 130 (772)
-|+-++.++ .++.+.. ++..|.+.|+
T Consensus 97 yAV~~L~~~---sd~eL~~--yL~QLVQaLK 122 (166)
T cd00870 97 YAVSRLKLA---SDEELLL--YLLQLVQALK 122 (166)
T ss_pred HHHHHHHhC---CHHHHHH--HHHHHHHHHH
Confidence 999888763 4444443 8888888886
No 320
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=26.47 E-value=1.2e+02 Score=31.65 Aligned_cols=98 Identities=12% Similarity=0.189 Sum_probs=52.7
Q ss_pred CCCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeeccCcc-CcccCCCCCCC---cCCCCCeeeEEEeeeecC---
Q 004132 644 GQGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTF-GLAAGGALQVP---QLQPGTSGRTLLPMVLFQ--- 715 (772)
Q Consensus 644 ~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~f-gl~~~~~~~~~---~l~p~~~~~~~~~l~~~~--- 715 (772)
..|+.+.++ +...++.-...+++.|++..+ +.+|.=.-.. |-....+...| .|+||+.....|-....+
T Consensus 27 ~agv~l~~TRvIy~~~~k~~sl~v~N~~~~p---yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~~~LP~ 103 (237)
T PRK15224 27 SFSVKLGATRVIYHAGTAGATLSVSNPQNYP---ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPT 103 (237)
T ss_pred eEEEEeCceEEEEeCCCcEEEEEEEcCCCCc---EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECCCCCCC
Confidence 446666655 445566667888888887654 6667521000 11111122223 788998877776543211
Q ss_pred -----------CCCCCC-C--------CcchhhhhhcCCCCeEEEeeccc
Q 004132 716 -----------NMSAGP-P--------SSLLQVAVKNNQQPVWYFNDKIS 745 (772)
Q Consensus 716 -----------~~~~~~-~--------~~~lqvAik~n~~~v~yf~~~~p 745 (772)
.+.+.+ . ...||+|+++.+. +||=-..++
T Consensus 104 DRESlFwlnv~~IPp~~~~~~~~~~~~~~~LqiairtrIK-LFYRP~~L~ 152 (237)
T PRK15224 104 DRETLQWVCIKAVPPENEPSDTQAKGATLDLNLSINVCDK-LIFRPDAVK 152 (237)
T ss_pred ceeEEEEEEEEEcCCCCcccccccccccceEEEEeheeee-EEEchhhcC
Confidence 011100 0 0138999999887 777444333
No 321
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=26.36 E-value=91 Score=32.81 Aligned_cols=96 Identities=14% Similarity=0.210 Sum_probs=54.0
Q ss_pred CCCCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeecc-C-ccCcccCC-----CCCCC---cCCCCCeeeEEEee
Q 004132 643 TGQGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFNK-N-TFGLAAGG-----ALQVP---QLQPGTSGRTLLPM 711 (772)
Q Consensus 643 ~~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~-n-~fgl~~~~-----~~~~~---~l~p~~~~~~~~~l 711 (772)
...|+.|.++ +...++.-...+++.|++..+ +.+|.=. + --...|.. +...| .|+||+...+.|-.
T Consensus 26 a~A~l~l~~TRviy~~~~~~~sl~l~N~~~~p---~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~ 102 (253)
T PRK15249 26 SWASVTILGSRIIYPSTASSVDVQLKNNDAIP---YIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIY 102 (253)
T ss_pred heeEEEeCceEEEEeCCCcceeEEEEcCCCCc---EEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEE
Confidence 3467777765 444466677888889987654 6666421 0 00122211 22234 78899887777654
Q ss_pred eec--CC----------CCCCCC--------CcchhhhhhcCCCCeEEEee
Q 004132 712 VLF--QN----------MSAGPP--------SSLLQVAVKNNQQPVWYFND 742 (772)
Q Consensus 712 ~~~--~~----------~~~~~~--------~~~lqvAik~n~~~v~yf~~ 742 (772)
..+ -| +.+.+| .+.||+|+++++. +||=--
T Consensus 103 ~~~~~lP~DRESlf~lnv~eIP~~~~~~~~~~n~l~ialr~~IK-LFyRP~ 152 (253)
T PRK15249 103 NNTKKLPQDRESVFWFNVLQVPPTNIGSDSGQNKMLVMLRSRIK-LFYRPD 152 (253)
T ss_pred cCCCCCCCCceEEEEEEeeecCCCCcccccccceEEEEeeeEEE-EEEccc
Confidence 321 11 111111 1249999999997 888543
No 322
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=26.32 E-value=1.4e+02 Score=31.18 Aligned_cols=99 Identities=19% Similarity=0.276 Sum_probs=56.3
Q ss_pred CCCCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeecc--CccCcccCC---C-CCCC---cCCCCCeeeEEEeee
Q 004132 643 TGQGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFNK--NTFGLAAGG---A-LQVP---QLQPGTSGRTLLPMV 712 (772)
Q Consensus 643 ~~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~--n~fgl~~~~---~-~~~~---~l~p~~~~~~~~~l~ 712 (772)
...|+.++++ +...++.-...+++.|++..+ ..+|.-. ..-...|.+ + ...| .|+||++..+.|-..
T Consensus 23 a~A~i~l~~TRvI~~~~~~~~sv~l~N~~~~p---~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~ 99 (246)
T PRK09926 23 SIADIVISGTRIIYKSDQKDVNVRLENKGNNP---LLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYT 99 (246)
T ss_pred heeeEEeCceEEEEeCCCceEEEEEEeCCCCc---EEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeC
Confidence 3467777765 444466777888889988765 4455322 111233322 1 2233 788998877776543
Q ss_pred ec-C-CCC----------CCCC---------CcchhhhhhcCCCCeEEEeeccc
Q 004132 713 LF-Q-NMS----------AGPP---------SSLLQVAVKNNQQPVWYFNDKIS 745 (772)
Q Consensus 713 ~~-~-~~~----------~~~~---------~~~lqvAik~n~~~v~yf~~~~p 745 (772)
.. + |.- +-+| .+.||+|+++.+. +||=--.++
T Consensus 100 ~~~~lP~DrESlf~lnv~eIP~~~~~~~~~~~n~l~iair~~IK-LFyRP~~l~ 152 (246)
T PRK09926 100 ASTALPKDRESVFWFNVLEVPPKPDAEKVANQSLLQLAFRTRIK-LFYRPDGLK 152 (246)
T ss_pred CCCCCCCCceEEEEEEeeecCCCCccccccccceEEEeeeeeEE-EEEcCccCC
Confidence 32 1 100 0011 2359999999997 888544443
No 323
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=26.07 E-value=5e+02 Score=23.52 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHhhhC-CCChHHHHHHHHHHHHHHhhccccccccchHH-HHHHhhcCCChhH-HHHHHHHHHHHHhhCCC
Q 004132 77 KITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVEDRGFLE-SLKDLISDNNPMV-VANAVAALAEIEENSSR 153 (772)
Q Consensus 77 ei~~~l~~~v~~~L~-d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~-~L~~lL~D~d~~V-v~~av~aL~eI~~~~~~ 153 (772)
++...+.|.+.++|. ...+-.|=.|.+-+..+..+.| +.+ ..++ .+..++.+..+.- ...++.++..+++...
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~-~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q~- 77 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSD-EVLNALMESILKNWTQETVQRQALICLIVLCQSQE- 77 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcH-HHHHHHHHHHHhccccchhHHHHHHHHHHHHHccc-
Confidence 567788999999999 8899999999999999987654 111 1233 3344444443333 3778888888886542
Q ss_pred CcccccHHHHHHHHH
Q 004132 154 PIFEITSHTLSKLLT 168 (772)
Q Consensus 154 ~~~~l~~~~~~~Ll~ 168 (772)
....+..+.+.+|++
T Consensus 78 ~~~~lp~~~~~~l~~ 92 (121)
T PF12397_consen 78 NVDSLPRKVFKALLK 92 (121)
T ss_pred ccccCCHHHHHHHHc
Confidence 122333444555443
No 324
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=25.85 E-value=9.6e+02 Score=26.80 Aligned_cols=59 Identities=20% Similarity=0.381 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHhhc----cc-------cccccchHHHHHHhhcCCC---hhHHHHHHHHHHHHHhhCCC
Q 004132 95 PYVRKTAAICVAKLYDIN----AE-------LVEDRGFLESLKDLISDNN---PMVVANAVAALAEIEENSSR 153 (772)
Q Consensus 95 pyVRK~Aa~~l~kl~~~~----p~-------~~~~~~~~~~L~~lL~D~d---~~Vv~~av~aL~eI~~~~~~ 153 (772)
+|-|+..+-.+.|+...- +. +++...+...|+..+.+.. +.|.+.|+..+..+..++|.
T Consensus 70 ~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT 142 (379)
T PF06025_consen 70 SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPT 142 (379)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCc
Confidence 556666666666665431 11 1221234455555665443 66777787777777766654
No 325
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=25.83 E-value=2.1e+02 Score=27.06 Aligned_cols=53 Identities=9% Similarity=0.241 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCC--ChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHh
Q 004132 436 AQVQLQLLTATVKLFLKKPTE--GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (772)
Q Consensus 436 ~~vq~~lLta~~Kl~~~~p~~--~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll 489 (772)
......+|....+.|.+.|+- .....+.+++..|... .|+++++.|...|.--
T Consensus 67 ~~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~-~~~~~k~~A~~LY~~Y 121 (135)
T PF13981_consen 67 DKLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTH-GDDEIKQKARDLYKKY 121 (135)
T ss_dssp HHHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC--TSCCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHh-ccHHHHHHHHHHHHHH
Confidence 445557899999999999862 0122333344445554 4888999998876543
No 326
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=25.77 E-value=1.6e+02 Score=30.66 Aligned_cols=95 Identities=18% Similarity=0.304 Sum_probs=52.7
Q ss_pred CCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceee---ccCccCcccCC---C-CCCC---cCCCCCeeeEEEeeee
Q 004132 645 QGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQF---NKNTFGLAAGG---A-LQVP---QLQPGTSGRTLLPMVL 713 (772)
Q Consensus 645 ~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~---n~n~fgl~~~~---~-~~~~---~l~p~~~~~~~~~l~~ 713 (772)
.|+.|.++ +...++.-...+++.|.+..+ +.+|. +.+. ...|.. + ...| .|+||+...+.|-...
T Consensus 10 A~v~l~~TRvI~~~~~~~~sv~l~N~~~~p---~LvQsWvd~~~~-~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~ 85 (233)
T PRK15246 10 AAVNIDRTRIIFASDDVAQSLTLSNDNTTP---MLLQVWTDAGNI-DASPDNSKTPLVALPPVFKMQPGELRTLRLLLSS 85 (233)
T ss_pred EEEEECceEEEEcCCCceEEEEEEeCCCCc---EEEEEEEeCCCC-ccCcccccCcEEECCcceEECCCCceEEEEEECC
Confidence 56777766 333456667888889988764 56665 1110 111211 1 2233 7889988777765432
Q ss_pred cCCCC------------CCCC--------CcchhhhhhcCCCCeEEEeecc
Q 004132 714 FQNMS------------AGPP--------SSLLQVAVKNNQQPVWYFNDKI 744 (772)
Q Consensus 714 ~~~~~------------~~~~--------~~~lqvAik~n~~~v~yf~~~~ 744 (772)
.+... +.+| ...||+|+++.+. +||=-..+
T Consensus 86 ~~~LP~DRESlf~lnv~~IP~~~~~~~~~~~~l~iair~rIK-lFyRP~~L 135 (233)
T PRK15246 86 RQQLATDRESLFWLNIYQIPPVTQDIKNHPRKLVLPLRLRLK-ILIRPTGL 135 (233)
T ss_pred CCCCCCCceEEEEEEEEEcCCCCcccccccceEEEEeeeEEE-EEECCccc
Confidence 11000 0011 1358999998887 77754444
No 327
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=25.73 E-value=9.2e+02 Score=26.51 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=35.2
Q ss_pred CCCHHHHhHHHHHhcCC-ChhhhHHHHHHHHHhhhCCCC--hHHHHHHHHHHHHHHhhccccc
Q 004132 57 DPNPLIRALAVRTMGCI-RVDKITEYLCDPLQRCLKDDD--PYVRKTAAICVAKLYDINAELV 116 (772)
Q Consensus 57 ~~np~iralALrtl~~I-~~~ei~~~l~~~v~~~L~d~~--pyVRK~Aa~~l~kl~~~~p~~~ 116 (772)
+.++.-|..||..|..= +...+.+|++..|-....... ..-.-...+.+.+-.-.||.+-
T Consensus 189 ~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 189 GSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred CCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 47889999999998764 455666666655555444321 1222334444444444577663
No 328
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=25.47 E-value=2.6e+02 Score=33.93 Aligned_cols=101 Identities=19% Similarity=0.156 Sum_probs=65.2
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc---ccchH
Q 004132 46 LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE---DRGFL 122 (772)
Q Consensus 46 L~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~---~~~~~ 122 (772)
+.+|.+..=.-+++.. .|+..|+.++.|. ...++..|-.++.. +--|..|+.-++.+.+..|.-+- +..++
T Consensus 39 ~l~~~l~~y~~~t~s~---~~~~il~~~~~P~-~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf 112 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNSQ---RALEILVGVQEPH-DKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLF 112 (668)
T ss_pred HHHHHHHHHHhhcCcH---HHHHHHHhcCCcc-HHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhH
Confidence 4567776554444432 3677778888661 12233345566664 45688888888899988776432 12334
Q ss_pred -HHHHHhhcCCChhHHHHHHHHHHHHHhhCC
Q 004132 123 -ESLKDLISDNNPMVVANAVAALAEIEENSS 152 (772)
Q Consensus 123 -~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~ 152 (772)
..|+.|..|.+..|+..|+.+|.-+.+.-|
T Consensus 113 ~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 113 KSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 444555679999999999999988876544
No 329
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=25.40 E-value=1.3e+02 Score=29.71 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=33.2
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhh
Q 004132 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLI 129 (772)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL 129 (772)
+...|..+|.| +..||--+.+.+.|+...+|+.+.. ..+.+.++..|
T Consensus 67 ~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 67 FLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred HHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 36668999999 9999999999999999988876532 23444444444
No 330
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=25.14 E-value=5.4e+02 Score=30.13 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=36.7
Q ss_pred HHhCcccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccC-CHHHHHHHHhhhCCCCCH
Q 004132 376 FRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-NADELLESFLESFPEEPA 436 (772)
Q Consensus 376 ~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~-~~~~~L~~l~~~f~~e~~ 436 (772)
.++.++..+.+++.||..+.+-+....+-.++-+|..|+.... ...+.++.+...+....+
T Consensus 227 ~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv~l~~~~E~l~e~~~~~p~~~~ 288 (851)
T KOG3723|consen 227 KQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPVALNSFLEMLKEIGERFPYLTG 288 (851)
T ss_pred HhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCccchhhHHHHHHHHHHhCCCccH
Confidence 3455666667777777766655555556666667777765432 345666666666654433
No 331
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=24.73 E-value=6e+02 Score=24.03 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=44.0
Q ss_pred CchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHH-HHHHhcccccHHHHHHHHHHhhhhccHHHHHH
Q 004132 252 AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLE-IMIKLASDRNIDQVLLEFKEYATEVDVDFVRK 330 (772)
Q Consensus 252 ~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~-lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~ 330 (772)
.+|++++.+|..+..+++.-..-|..++ .+++-++ .|.++.+... ..+.+++.+
T Consensus 51 ~n~~v~l~aL~LLe~~vkNCG~~fh~ei------------ask~Fl~e~L~~~i~~~~-------------~~~~~Vk~k 105 (141)
T cd03565 51 KNHKEVMLTLTVLETCVKNCGHRFHVLV------------AKKDFIKDVLVKLINPKN-------------NPPTIVQEK 105 (141)
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHH------------HHHHhhhHHHHHHHcccC-------------CCcHHHHHH
Confidence 5778888888888888877655444332 1122222 1333332211 124466677
Q ss_pred HHHHHHHHHHhhhhhHH-HHHHHHHHHHhhcc
Q 004132 331 AVRAIGRCAIKLERAAE-RCISVLLELIKIKV 361 (772)
Q Consensus 331 ~v~aIg~la~k~~~~~~-~~vd~Ll~ll~~~~ 361 (772)
+..-|..++..|....+ .++..+.+.|...|
T Consensus 106 il~li~~W~~~f~~~~~l~~i~~~y~~L~~~G 137 (141)
T cd03565 106 VLALIQAWADAFRGSPDLTGVVEVYEELKKKG 137 (141)
T ss_pred HHHHHHHHHHHhCCCccchHHHHHHHHHHHcC
Confidence 77777777776643221 23444444444333
No 332
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=24.72 E-value=6e+02 Score=24.53 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=24.2
Q ss_pred hhhccC--CchhHHHHHHHHHHHHHhhChhhhh
Q 004132 246 LVTLLS--AEPEIQYVALRNINLIVQRRPTILA 276 (772)
Q Consensus 246 L~~Lls--~~~~iryvaL~~l~~i~~~~p~~~~ 276 (772)
|..++. .++++|.-++|.|..|..-+|...+
T Consensus 15 L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k 47 (160)
T PF11865_consen 15 LLNILKTEQSQSIRREALRVLGILGALDPYKHK 47 (160)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh
Confidence 345553 4689999999999999998886554
No 333
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=24.61 E-value=99 Score=32.30 Aligned_cols=96 Identities=10% Similarity=0.125 Sum_probs=52.9
Q ss_pred CCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeecc-CccC-cccC---C-CCCCC---cCCCCCeeeEEEeeeec
Q 004132 645 QGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFNK-NTFG-LAAG---G-ALQVP---QLQPGTSGRTLLPMVLF 714 (772)
Q Consensus 645 ~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~-n~fg-l~~~---~-~~~~~---~l~p~~~~~~~~~l~~~ 714 (772)
.|+.+.++ +...++.-...+++.|.+..+ +.+|.-. +.=+ ..|. . +...| .|+||+.....|--..+
T Consensus 33 Agv~l~~TRvIy~~~~k~~sv~i~N~~~~p---yLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~ 109 (242)
T PRK15253 33 AGIVIYGTRVIYPAEKKEVVVQLVNQGEQA---SLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPN 109 (242)
T ss_pred eeEEeCceEEEEeCCCceEEEEEEcCCCCc---EEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC
Confidence 47777765 555566777888888888754 6666522 1000 1111 1 12223 77899887776653211
Q ss_pred C--------------CCCCC----CCCcchhhhhhcCCCCeEEEeecc
Q 004132 715 Q--------------NMSAG----PPSSLLQVAVKNNQQPVWYFNDKI 744 (772)
Q Consensus 715 ~--------------~~~~~----~~~~~lqvAik~n~~~v~yf~~~~ 744 (772)
. .+.+. ...+.||+|+++.+. +||=-..+
T Consensus 110 ~LP~DRESlfwlnv~~IPp~~~~~~~~n~l~iairtriK-LFYRP~~L 156 (242)
T PRK15253 110 SLPDNKESLFYLNVLDIPPNSQENAGKNVLKFAMQNRIK-LIWRPSRI 156 (242)
T ss_pred CCCcceeEEEEEEEEEcCCCCCCcCcCcEEEEEeeeEEE-EEEcchhc
Confidence 1 01110 113459999999887 77744333
No 334
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.60 E-value=1.4e+03 Score=28.27 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHhhChhhhhhhccee--------eeccCCc--HhHHHHHHHHHHHhcccccHH------HHHHHHH-
Q 004132 255 EIQYVALRNINLIVQRRPTILAHEIKVF--------FCKYNDP--IYVKMEKLEIMIKLASDRNID------QVLLEFK- 317 (772)
Q Consensus 255 ~iryvaL~~l~~i~~~~p~~~~~~~~if--------~~~~~d~--~~Ik~~kL~lL~~L~n~~Nv~------~Il~EL~- 317 (772)
.+|.-..+.+...+++|++.|++.+.-| -....++ -+....|+..|...+...-.. .+++++.
T Consensus 262 ~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e 341 (960)
T KOG1992|consen 262 KLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICE 341 (960)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHH
Confidence 3666788889999999999888654322 2234454 458888999998877543322 2233222
Q ss_pred ----------------------Hhhhh----ccHHHH-HHHHHHHHHHHHhhhhhHHHHHH
Q 004132 318 ----------------------EYATE----VDVDFV-RKAVRAIGRCAIKLERAAERCIS 351 (772)
Q Consensus 318 ----------------------~y~~~----~d~~~~-~~~v~aIg~la~k~~~~~~~~vd 351 (772)
+|++. .|.+-| |.++.-++.++.+|+.....|++
T Consensus 342 ~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~ 402 (960)
T KOG1992|consen 342 KVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFS 402 (960)
T ss_pred hhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 34421 345544 45566778888888654444433
No 335
>PF14961 BROMI: Broad-minded protein
Probab=24.60 E-value=2.7e+02 Score=35.50 Aligned_cols=127 Identities=13% Similarity=0.237 Sum_probs=0.0
Q ss_pred CCcHhHHHHHHHHHHH-----hcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcc
Q 004132 287 NDPIYVKMEKLEIMIK-----LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV 361 (772)
Q Consensus 287 ~d~~~Ik~~kL~lL~~-----L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~ 361 (772)
+.|..||.+|+++|.+ +.+.+++..+-+.|..-+.+.|..+. +.++.+.-+++...+
T Consensus 173 ~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is------------------~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 173 GQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEIS------------------DASLRFHAKMFSSSP 234 (1296)
T ss_pred CCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHH------------------HHHHHHHHHhccCCc
Q ss_pred chhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHHH-HHHHHHHhhhccccCC-----HHHHHHHHhhhC
Q 004132 362 NYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAK-ASMIWIIGEYAERIDN-----ADELLESFLESF 431 (772)
Q Consensus 362 ~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~-~~~iwilGEy~~~i~~-----~~~~L~~l~~~f 431 (772)
-++..|+-..+.+-+..+=--++..+..+..-++--..+-.+ --.+-++-||-..++. ++..++.+++.+
T Consensus 235 l~~trEiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsT 310 (1296)
T PF14961_consen 235 LNMTREIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVEST 310 (1296)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHH
No 336
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=24.18 E-value=1.4e+03 Score=28.09 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=14.7
Q ss_pred CChHHHhhHHHHHHHhcCCHHHHHhhhccC
Q 004132 474 DNPDLRDRAYIYWRLLSTDPEAAKDVVLAE 503 (772)
Q Consensus 474 ~~~dvrdRA~~y~~Ll~~~~~~~~~ivl~~ 503 (772)
+|..+|. .|+.|+. +-..+||+-.
T Consensus 416 nDy~~rp---qYykLIE---ecISqIvlHr 439 (1102)
T KOG1924|consen 416 NDYYIRP---QYYKLIE---ECISQIVLHR 439 (1102)
T ss_pred hhhhhhH---HHHHHHH---HHHHHHHHhc
Confidence 5666765 4677764 4456777643
No 337
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=24.06 E-value=3.3e+02 Score=26.82 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=18.1
Q ss_pred HHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC
Q 004132 60 PLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD 92 (772)
Q Consensus 60 p~iralALrtl~~I~~~ei~~~l~~~v~~~L~d 92 (772)
+.||..|+++|..+.++++.-|+.. +.++|+.
T Consensus 85 ~~VR~yAV~~L~~~~ddeL~~yLpQ-LVQaLky 116 (169)
T cd00869 85 QEVRAHAVQWLARLSNDELLDYLPQ-LVQALKF 116 (169)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHc
Confidence 4566666666666666666555433 3344443
No 338
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=24.01 E-value=1.1e+03 Score=26.89 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHh
Q 004132 436 AQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (772)
Q Consensus 436 ~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll 489 (772)
..|+..+-.|++-+ -..|++ ..++|+-+++... ...|.++|+|+.....-|
T Consensus 290 ~~V~Aa~A~A~v~l-~~lP~K-LnPiIrpLMdSIK-~Een~~LQ~rsA~slA~L 340 (441)
T PF12054_consen 290 VRVLAAAASALVAL-GGLPKK-LNPIIRPLMDSIK-REENELLQQRSAESLARL 340 (441)
T ss_pred HHHHHHHHHHHHHh-ccCCCC-ccHHHHHHHHHhh-ccccHHHHHHHHHHHHHH
Confidence 44555444444444 234664 8999999999654 558999999998765433
No 339
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.96 E-value=5.4e+02 Score=31.07 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=39.3
Q ss_pred hhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHHHH
Q 004132 341 KLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKA 404 (772)
Q Consensus 341 k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~ 404 (772)
+|.+.++||++++..+...-...=.+-....+..++..||+.....+..+...=.++...+.|.
T Consensus 579 ~~~~~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~~R~dls~~~~k~ 642 (667)
T KOG2286|consen 579 KYGSDVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAILKIRGDLSRSEKKK 642 (667)
T ss_pred HhCcchhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhcCCCHHHHHH
Confidence 3444677777776665543222212223345677778888888888888877666776665543
No 340
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.95 E-value=2.6e+02 Score=31.99 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHh-hhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHH
Q 004132 308 NIDQVLLEFKEY-ATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESI 386 (772)
Q Consensus 308 Nv~~Il~EL~~y-~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~i 386 (772)
|+..++.||..- ..+.|+ ...++|..+......-.+....+|++++...+..++.-+...+-.++-+.+-.+.-+
T Consensus 7 kl~~lIeelT~sg~~~~~p----~~~k~lkkiv~~sdee~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~li 82 (661)
T KOG2374|consen 7 KLIGLIEELTKSGAQEVDP----RLLKALKKIVRYSDEEVRLSSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRTLI 82 (661)
T ss_pred HHHHHHHHHhhcCCcccCh----HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 445556665431 223343 334444444444444466778999999999999999988888888999988888888
Q ss_pred HHHHHHhcc
Q 004132 387 IATLCESLD 395 (772)
Q Consensus 387 i~~L~~~l~ 395 (772)
+..+-++|+
T Consensus 83 i~n~~efLe 91 (661)
T KOG2374|consen 83 IENLDEFLE 91 (661)
T ss_pred HhCHHHHHH
Confidence 888877764
No 341
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.74 E-value=1.1e+03 Score=26.17 Aligned_cols=47 Identities=15% Similarity=0.038 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHhhccchhHHHHHH
Q 004132 324 DVDFVRKAVRAIGRCAIKLERAA----ERCISVLLELIKIKVNYVVQEAII 370 (772)
Q Consensus 324 d~~~~~~~v~aIg~la~k~~~~~----~~~vd~Ll~ll~~~~~~v~~e~i~ 370 (772)
|++.-.++..+|+.+|.+-+-.. .-=+++++.++...+++-..+...
T Consensus 255 dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k 305 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAK 305 (461)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHH
Confidence 45566667777788887643111 112788888888866654444333
No 342
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=22.45 E-value=1.3e+03 Score=27.06 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=35.6
Q ss_pred CCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCc-HhHHHHHHHHHHHhcccc
Q 004132 251 SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDP-IYVKMEKLEIMIKLASDR 307 (772)
Q Consensus 251 s~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~-~~Ik~~kL~lL~~L~n~~ 307 (772)
|.+-+-+|+..+.+...+.. ++-+.+.++.++..|| .|||..-+...|.|....
T Consensus 168 sk~v~~k~l~~~~fesflk~---l~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~ 222 (821)
T COG5593 168 SKEVQNKYLKQRIFESFLKN---LRFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEAR 222 (821)
T ss_pred hhhhcchHHHHHHHHHHHHH---HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC
Confidence 44445566666666555442 3334455677788888 889999999999886544
No 343
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=22.44 E-value=3.4e+02 Score=30.03 Aligned_cols=49 Identities=16% Similarity=0.416 Sum_probs=34.9
Q ss_pred CcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhcc-HHHHHHHHHHHH
Q 004132 288 DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVD-VDFVRKAVRAIG 336 (772)
Q Consensus 288 d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d-~~~~~~~v~aIg 336 (772)
++......+++++-+--..+.+++|+++|++|-.+.+ .+|..+.++.|.
T Consensus 257 ~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~ 306 (401)
T KOG1684|consen 257 DESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLK 306 (401)
T ss_pred CccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 3444555688888887788899999999988875333 456666666554
No 344
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=22.41 E-value=4.6e+02 Score=22.99 Aligned_cols=58 Identities=22% Similarity=0.350 Sum_probs=39.6
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 004132 318 EYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (772)
Q Consensus 318 ~y~~~~d~~~~~~~v~aIg~la~k~~----~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~ 377 (772)
+|+...+ +=+.+++...-..+...+ ..+.+|+.++-+++..+.+|+..| +.++..++.
T Consensus 12 ~f~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E-~~RL~~lL~ 73 (95)
T PF07749_consen 12 EFVAASD-DEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKE-IARLERLLE 73 (95)
T ss_dssp HHHHS-C-HHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHH-HHHHHHHHH
T ss_pred HHHcCcH-HHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHH-HHHHHHHHh
Confidence 4554444 444556655555555443 467899999999999999999888 566777776
No 345
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=22.39 E-value=5.6e+02 Score=29.85 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcccccHHHHHHHHHH
Q 004132 294 MEKLEIMIKLASDRNIDQVLLEFKE 318 (772)
Q Consensus 294 ~~kL~lL~~L~n~~Nv~~Il~EL~~ 318 (772)
++.+.=|..=+|.+|+..|+.||..
T Consensus 165 kksInglInkvn~sNi~~ii~eLfq 189 (739)
T KOG2140|consen 165 KKSINGLINKVNASNIQEIIRELFQ 189 (739)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 3455666777899999999999864
No 346
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=22.27 E-value=2.3e+02 Score=29.63 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=48.3
Q ss_pred CCeEEEEE-EeeeCCeeEEEEEEEecCCC-Cccccceeecc---Cc-cCcccCCCCCCC---cCCCCCeeeEEEeeeecC
Q 004132 645 QGLQIGAE-LTRQDGQVFYSMLFENNTQT-PLDGFMIQFNK---NT-FGLAAGGALQVP---QLQPGTSGRTLLPMVLFQ 715 (772)
Q Consensus 645 ~gl~i~~~-~~~~~~~~~~~~~~tN~~~~-~~~~f~~q~n~---n~-fgl~~~~~~~~~---~l~p~~~~~~~~~l~~~~ 715 (772)
.|+.++++ +...++.-...++++|++.+ + +.+|.=. +. =+..+ .+...| .|+||+.....|-....+
T Consensus 37 Agv~l~~TRvIy~~~~~~~sl~v~N~~~~~p---~LvQsWvd~~~~~~~~~~-pFivtPPlfrl~p~~~q~lRIi~~~~~ 112 (243)
T PRK15290 37 AGVVIGGTRVVYLSNNPDKSISVFSKEEKIP---YLIQAWVDPFNKEDKSKA-PFTVIPPVSRLEPSQEKVLRIIHTKGV 112 (243)
T ss_pred EeEEECceEEEEeCCCceEEEEEEeCCCCCc---EEEEEEEecCCCCCcccC-CEEEcCCeEEECCCCceEEEEEEcCCC
Confidence 45555554 33345555667777777643 3 3333311 00 01111 122223 778888777765543211
Q ss_pred --C-------------CCCC---CCCcchhhhhhcCCCCeEEEeecc
Q 004132 716 --N-------------MSAG---PPSSLLQVAVKNNQQPVWYFNDKI 744 (772)
Q Consensus 716 --~-------------~~~~---~~~~~lqvAik~n~~~v~yf~~~~ 744 (772)
| ..+. ...+.||+|+++.+. +||=-..+
T Consensus 113 ~LP~DRESlf~lnv~eIPp~~~~~~~n~L~iair~rIK-lFyRP~~L 158 (243)
T PRK15290 113 SLPDDRESVFWLNIKNIPPSASNKATNSLEIAVKTRIK-LFWRPASI 158 (243)
T ss_pred CCCCCeeEEEEEEEEEcCCCCcccccceEEEEEEEeee-EEEecccc
Confidence 0 1111 012359999999997 88865544
No 347
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=1.3e+03 Score=27.09 Aligned_cols=276 Identities=15% Similarity=0.161 Sum_probs=143.7
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHh--cCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHH
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRTM--GCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLES 124 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrtl--~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~ 124 (772)
...++.|-+-...+..++-||--+ +.+++.+=.+...-.+..-+.+++.-.|-.|++++.-.|.- ..-+ +..+.
T Consensus 414 gl~~Ldkyly~de~~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsG--t~~e--evl~l 489 (881)
T COG5110 414 GLETLDKYLYADESYRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSG--TQAE--EVLEL 489 (881)
T ss_pred hHHHHHHHHhcCcccccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcC--CcHH--HHHHH
Confidence 346788888777788888777544 45566665566666678888889999999999999988842 2222 25666
Q ss_pred HHHhhcCCChhHHHHHHHH--HHHHHhhCCCCcccccHHHHHHHHHHh--hcCChhHHHHHHHHHhccccCCHHHHHHHH
Q 004132 125 LKDLISDNNPMVVANAVAA--LAEIEENSSRPIFEITSHTLSKLLTAL--NECTEWGQVFILDALSRYKAADAREAENIV 200 (772)
Q Consensus 125 L~~lL~D~d~~Vv~~av~a--L~eI~~~~~~~~~~l~~~~~~~Ll~~L--~~~~ew~qv~iL~~L~~~~~~~~~e~~~il 200 (772)
|..+..+.|.-+-..++++ |..+--..|. =++....+..++..= ..-+.|.+--.|-+-..|..+.+ .+.++.
T Consensus 490 L~Pi~~std~pie~~~~asltLg~vFvGtcn--gD~ts~ilqtf~Er~~~e~~tqw~RFlaLgLa~Lf~g~~d-~~d~v~ 566 (881)
T COG5110 490 LQPIMFSTDSPIEVVFFASLTLGSVFVGTCN--GDLTSLILQTFVERGKIESETQWFRFLALGLASLFYGRKD-QVDDVE 566 (881)
T ss_pred hhhhhcCCCCcHHHHHHHHHhhhheEeeccC--chHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHccccc-hhHHHH
Confidence 7777666665333333333 3333222221 123333344444332 23578998877766665543321 122222
Q ss_pred HHHhH---hhcCCCHHHHHHHHHHHHHhhhhcC--ChHHHHHHHHhc-ccchhhccCCchhHHHHHHHHHHHHHhhC---
Q 004132 201 ERVTP---RLQHANCAVVLSAVKMILQQMELIT--STDVVRNLCKKM-APPLVTLLSAEPEIQYVALRNINLIVQRR--- 271 (772)
Q Consensus 201 ~~v~~---~L~~~n~aVv~eaik~i~~~~~~i~--~~~~~~~l~~~~-~~~L~~Lls~~~~iryvaL~~l~~i~~~~--- 271 (772)
+.+.. -+.. ...|+. ....+.. +.-.++.+..-. -.+=-++-+.+..|+-.|+-.+..|+--.
T Consensus 567 eti~aIeg~ls~-~~eiLv-------~~c~Y~GTGdvl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig 638 (881)
T COG5110 567 ETIMAIEGALSK-HEEILV-------KGCQYVGTGDVLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIG 638 (881)
T ss_pred HHHHHhcchhhh-hHHHHH-------hhceecccCcHHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhh
Confidence 22111 1110 011111 1111111 111111111000 00000122335566666665555554321
Q ss_pred hhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHH-HHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 004132 272 PTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNID-QVLLEFKEYATEVDVDFVRKAVRAIGRCAI 340 (772)
Q Consensus 272 p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~-~Il~EL~~y~~~~d~~~~~~~v~aIg~la~ 340 (772)
.+++-+|..... .|. .+.| |+.+-+-+.+...+|=+ .|++.|..|..+.|.+..-.+|.++|-|+-
T Consensus 639 ~eMvlRhf~h~m-hyg-~~hi-R~~~PLa~gils~SnPQm~vfDtL~r~shd~dl~v~~ntIfamGLiGA 705 (881)
T COG5110 639 SEMVLRHFSHSM-HYG-SSHI-RSVLPLAYGILSPSNPQMNVFDTLERSSHDGDLNVIINTIFAMGLIGA 705 (881)
T ss_pred HHHHHHHhhhHh-hcC-cHHH-HHHHHHHHhcccCCCcchHHHHHHHHhccccchhHHHHHHHHhhcccc
Confidence 233333322211 122 2344 45677777777777754 588888889998888888888888877764
No 348
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=22.06 E-value=1.1e+02 Score=27.86 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=37.2
Q ss_pred EEEEEEEecCCCCccccceeeccCccCcccCCCCCCCcCCCCCeeeEEEeeeecCCCCCCCCCcchhhhhh
Q 004132 661 FYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVK 731 (772)
Q Consensus 661 ~~~~~~tN~~~~~~~~f~~q~n~n~fgl~~~~~~~~~~l~p~~~~~~~~~l~~~~~~~~~~~~~~lqvAik 731 (772)
..+++++|++.++.. |.+.+.... |+....+...-.|+||++....+-+........ .....+++-|.
T Consensus 34 ~Y~lkl~Nkt~~~~~-~~i~~~g~~-~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~~~-~~~~~i~f~v~ 101 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRT-YTISVEGLP-GAELQGPENTITVPPGETREVPVFVTAPPDALK-SGSTPITFTVT 101 (118)
T ss_dssp EEEEEEEE-SSS-EE-EEEEEES-S-S-EE-ES--EEEE-TT-EEEEEEEEEE-GGG-S-SSEEEEEEEEE
T ss_pred EEEEEEEECCCCCEE-EEEEEecCC-CeEEECCCcceEECCCCEEEEEEEEEECHHHcc-CCCeeEEEEEE
Confidence 789999999999866 777776522 554422111117899999888887765543321 22335555554
No 349
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=21.82 E-value=1e+02 Score=29.79 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=60.8
Q ss_pred CCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc----ccccchHHHHHHhhc
Q 004132 58 PNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL----VEDRGFLESLKDLIS 130 (772)
Q Consensus 58 ~np~iralALrtl~~I~---~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~----~~~~~~~~~L~~lL~ 130 (772)
..+.+|+.|+=+++.+- ..+..+.+.+.+...+.+.+.--...|+.++.-+|...|+. +..+|+.+.+..+..
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 45667777777776663 22344555566666666533334456777788888888774 445689999999988
Q ss_pred --CCChhHHHHHHHHHHHHH
Q 004132 131 --DNNPMVVANAVAALAEIE 148 (772)
Q Consensus 131 --D~d~~Vv~~av~aL~eI~ 148 (772)
.++..+...++-+|.--|
T Consensus 97 ~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 778888888877776654
No 350
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=21.66 E-value=1.9e+02 Score=25.80 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHH
Q 004132 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (772)
Q Consensus 78 i~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~ 127 (772)
.++.++..+..++.|-+|.||.-|..-+--+.+.+|+.+-..+|.+.|..
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~ 57 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPN 57 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHH
Confidence 35667778999999999999999999999999999998333456665543
No 351
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=20.61 E-value=7e+02 Score=23.31 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=20.6
Q ss_pred ccCCchhHHHHHHHHHHHHHhhChhhhh
Q 004132 249 LLSAEPEIQYVALRNINLIVQRRPTILA 276 (772)
Q Consensus 249 Lls~~~~iryvaL~~l~~i~~~~p~~~~ 276 (772)
|.+.+|++++.||..+..+++....-|.
T Consensus 51 l~~~~~~vq~~aL~lld~lvkNcg~~f~ 78 (140)
T PF00790_consen 51 LKHGNPNVQLLALTLLDALVKNCGPRFH 78 (140)
T ss_dssp HTTSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 4457888888888888888877655444
No 352
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=20.59 E-value=2.6e+02 Score=35.78 Aligned_cols=101 Identities=20% Similarity=0.171 Sum_probs=73.9
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCC---ChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc--ccc-ccchH
Q 004132 49 NTFVKDSQDPNPLIRALAVRTMGCI---RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE--LVE-DRGFL 122 (772)
Q Consensus 49 Ntl~kDl~~~np~iralALrtl~~I---~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~--~~~-~~~~~ 122 (772)
+.+-.-..+..+.+|-.|.|+++.+ ...+..-+++..+..++.+.+-.+||-++.++..+....-. +.. ..=++
T Consensus 819 ~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv 898 (1549)
T KOG0392|consen 819 PRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLV 898 (1549)
T ss_pred hHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeeh
Confidence 4445566778888998888876654 56777778888899999999999999999998776643211 111 01145
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHh
Q 004132 123 ESLKDLISDNNPMVVANAVAALAEIEE 149 (772)
Q Consensus 123 ~~L~~lL~D~d~~Vv~~av~aL~eI~~ 149 (772)
..|..+++|.+..|+-+|..++..+..
T Consensus 899 ~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 899 VPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHhc
Confidence 677788899999999888888877654
No 353
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=20.26 E-value=2.3e+02 Score=29.59 Aligned_cols=97 Identities=15% Similarity=0.308 Sum_probs=51.4
Q ss_pred CCCeEEEEE-EeeeCCeeEEEEEEEecCCC-Cccccceeecc-CccCcccCCCCCCC---cCCCCCeeeEEEeeee---c
Q 004132 644 GQGLQIGAE-LTRQDGQVFYSMLFENNTQT-PLDGFMIQFNK-NTFGLAAGGALQVP---QLQPGTSGRTLLPMVL---F 714 (772)
Q Consensus 644 ~~gl~i~~~-~~~~~~~~~~~~~~tN~~~~-~~~~f~~q~n~-n~fgl~~~~~~~~~---~l~p~~~~~~~~~l~~---~ 714 (772)
..|+.+.++ +...++.-...+++.|++.. + +.+|.=. +.-|-....+...| .|+||+...+.|-... +
T Consensus 15 ~A~v~l~~TRvIy~~~~~~~sv~v~N~~~~~p---~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~ 91 (239)
T PRK15254 15 PAAVNVDRTRIIMDAPQKTVAITLNNDDKTTP---FLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTD 91 (239)
T ss_pred eEeEEECceEEEEeCCCceEEEEEEeCCCCCc---EEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCC
Confidence 456666655 44456667788888887753 3 3334211 00011111122223 7889988777765321 1
Q ss_pred C--------------CCCC-CCCCcchhhhhhcCCCCeEEEeecc
Q 004132 715 Q--------------NMSA-GPPSSLLQVAVKNNQQPVWYFNDKI 744 (772)
Q Consensus 715 ~--------------~~~~-~~~~~~lqvAik~n~~~v~yf~~~~ 744 (772)
+ .+.+ .+..+.||+|+++.+. +||=-..+
T Consensus 92 ~lP~DRESlf~lnv~~IP~~~~~~n~L~iair~~iK-LFyRP~~L 135 (239)
T PRK15254 92 KLPQDRETLFWFNVRGVPPKPEDDNVLQLAMQSQLK-LFYRPKAI 135 (239)
T ss_pred CCCCCceEEEEEEEEEcCCCCCCCceEEEEEEeEEe-EEEccccc
Confidence 0 0111 1113469999999887 88854444
No 354
>PF08752 COP-gamma_platf: Coatomer gamma subunit appendage platform subdomain; InterPro: IPR014863 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal appendage domain of the gamma subunit of coatomer complexes. The appendage domain of the gamma coatomer subunit has a similar overall structural fold to the appendage domain of clathrin adaptors, and can also share the same motif-based cargo recognition and accessory factor recruitment mechanisms. The coatomer gamma subunit appendage domain contains a protein-protein interaction site and a second proposed binding site that interacts with the alpha, beta, epsilon COPI subcomplex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0005798 Golgi-associated vesicle; PDB: 1PZD_A 1R4X_A.
Probab=20.08 E-value=88 Score=30.17 Aligned_cols=57 Identities=9% Similarity=0.133 Sum_probs=39.8
Q ss_pred CCeeEEEEEEEecC-CCCccccceeeccCccCcccCCCCCCCcCCCCCeeeEEEeeee
Q 004132 657 DGQVFYSMLFENNT-QTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVL 713 (772)
Q Consensus 657 ~~~~~~~~~~tN~~-~~~~~~f~~q~n~n~fgl~~~~~~~~~~l~p~~~~~~~~~l~~ 713 (772)
.++++++..++|.- .+-+++..++++-..-++.+....+++.|+||++..+.+-+..
T Consensus 47 ~~hiVlQF~v~NTL~dq~LenV~V~~~~~~~~~~~~~~ipi~~L~~~~~~~~yV~l~~ 104 (151)
T PF08752_consen 47 AEHIVLQFNVTNTLNDQVLENVSVVLEPSEEEFEEVFIIPIPSLPYNEPGSCYVVLKR 104 (151)
T ss_dssp SSEEEEEEEEEE--TTEEEEEEEEEEEESSS--EEEEEE-EEEE-CT--EEEEEEEE-
T ss_pred cccEEEEEEEeeccCceeeeeEEEEEecCCceEEEEEEEEhhhCCCCCCeeEEEEEEe
Confidence 56999999999965 5799999999988665566655566679999999888888876
No 355
>KOG4262 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.07 E-value=1e+03 Score=26.83 Aligned_cols=243 Identities=14% Similarity=0.150 Sum_probs=0.0
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHH-----------HHHHhhcCChhHHHHHHHHHhccc
Q 004132 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSK-----------LLTALNECTEWGQVFILDALSRYK 189 (772)
Q Consensus 121 ~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~-----------Ll~~L~~~~ew~qv~iL~~L~~~~ 189 (772)
+.-.+.++|.|..|.|+.+|+.....+++.....++-..-+.+.+ ++..+.-+=.-.++..|..+...+
T Consensus 140 ~~t~~~~~~~d~~~~~l~scL~~dl~ll~~~~~~l~~~llp~iyref~~~~~~~~~ll~~~~~~Id~~~i~~l~~~~~~g 219 (496)
T KOG4262|consen 140 LFTEKWECLLDDSPLVLTSCLYSDLRLLADHYRVLGVVLLPNIYREFIKFCVKMFRLLLHLSLKIDRDLILLLQDLSHVG 219 (496)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhhceEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhh
Q ss_pred cCCHHHHHHHHHHHhHhhcCCCH------------HHHHHHHHHHHHhhhhcCChHHHHHHHHhcccc------hhhcc-
Q 004132 190 AADAREAENIVERVTPRLQHANC------------AVVLSAVKMILQQMELITSTDVVRNLCKKMAPP------LVTLL- 250 (772)
Q Consensus 190 ~~~~~e~~~il~~v~~~L~~~n~------------aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~------L~~Ll- 250 (772)
.--.---..+++.+...+.-... .|=++++.-++..+.+.+.++++..+.--+..- +++++
T Consensus 220 ~l~~f~~D~v~n~~~qsldweT~eQyclwqiv~Ah~vpLr~il~ilp~l~ak~Hpeals~~LLllkre~ep~~eiVR~vl 299 (496)
T KOG4262|consen 220 ELREFWNDLVSNHCSQSLDWETSEQYCLWQIVPAHEVPLRFILGILPLLSAKRHPEALSKKLLLLKREEEPLIEIVRFVL 299 (496)
T ss_pred hhhhhHhhHHHHHHHHHHhhhhhhhhHhhhhhhhcCCcHHHHhhhhhhcccccCHHHHHHHHHhcccccccHHHHHHHHH
Q ss_pred ---CCchhHHHH--HHH---HHHHHHhhChhhhhhhcceeeeccC--CcHhHHHHHHHHHHHhcccccHHHHHHHHHHhh
Q 004132 251 ---SAEPEIQYV--ALR---NINLIVQRRPTILAHEIKVFFCKYN--DPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA 320 (772)
Q Consensus 251 ---s~~~~iryv--aL~---~l~~i~~~~p~~~~~~~~if~~~~~--d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~ 320 (772)
+..++..|+ ++| -+...++++-++++.+++.++...+ --+.+|.+-..-+......-..++|+..|.+|.
T Consensus 300 sr~~p~kdd~fttsalR~~i~~~ewCqk~~eilaevIksLL~~n~~~s~pnkr~~~pk~~s~~~s~ptl~QIlehL~hfr 379 (496)
T KOG4262|consen 300 SRIHPTKDDIFTTSALRWAIWLLEWCQKNHEILAEVIKSLLYDNLFESIPNKRNVEPKALSMVWSIPTLPQILEHLLHFR 379 (496)
T ss_pred cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCCccccCCccccccccccccHHHHHHHHHHHH
Q ss_pred hhccH-HHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHhhccch
Q 004132 321 TEVDV-DFVRKAVRAIGRCAIK--LERAAERCISVLLELIKIKVNY 363 (772)
Q Consensus 321 ~~~d~-~~~~~~v~aIg~la~k--~~~~~~~~vd~Ll~ll~~~~~~ 363 (772)
..+-. .-++.-+...-.=|.+ +.+..++..+...++.-.+.+|
T Consensus 380 l~lve~tkqr~t~~~m~~sALQea~as~~~~~kk~F~dlfaLA~ey 425 (496)
T KOG4262|consen 380 LHLVETTKQRDTIVRMLTSALQEAEASGVIRSKKIFLDLFALAPEY 425 (496)
T ss_pred HHHHhccccceeehHHHHHHHHHHHhhccHHHHHHHhhhhhhhHHH
Done!