Query 004132
Match_columns 772
No_of_seqs 379 out of 1536
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 15:19:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_B AP-2 complex subunit be 100.0 5.6E-91 1.9E-95 817.1 51.1 547 1-548 41-589 (591)
2 2vgl_A Adaptor protein complex 100.0 1.5E-82 5E-87 747.5 38.8 509 1-522 66-616 (621)
3 1w63_A Adapter-related protein 100.0 4.3E-77 1.5E-81 702.3 38.1 503 1-518 62-603 (618)
4 3tjz_B Coatomer subunit gamma; 100.0 2.8E-50 9.6E-55 436.1 12.7 289 1-306 55-354 (355)
5 2g30_A AP-2 complex subunit be 100.0 1.7E-36 5.8E-41 313.2 14.5 140 630-770 27-167 (258)
6 1b3u_A Protein (protein phosph 99.8 4.1E-17 1.4E-21 188.9 34.8 479 8-490 86-586 (588)
7 1b3u_A Protein (protein phosph 99.7 8.1E-16 2.8E-20 178.0 28.9 430 11-449 128-585 (588)
8 4fdd_A Transportin-1; heat rep 99.7 4.2E-14 1.4E-18 172.2 36.5 480 9-494 215-788 (852)
9 4fdd_A Transportin-1; heat rep 99.6 9.2E-14 3.1E-18 169.2 34.0 413 17-468 21-491 (852)
10 2vgl_B AP-2 complex subunit be 99.6 7.6E-15 2.6E-19 171.5 20.9 423 49-490 16-454 (591)
11 1w63_A Adapter-related protein 99.6 4E-14 1.4E-18 166.3 24.3 405 49-469 37-468 (618)
12 1u6g_C TIP120 protein, CAND1; 99.6 1.7E-12 5.7E-17 164.3 39.1 445 8-455 5-602 (1230)
13 1wa5_B Importin alpha subunit; 99.6 6.6E-13 2.3E-17 152.7 30.9 341 7-378 85-458 (530)
14 2jdq_A Importin alpha-1 subuni 99.6 1.2E-12 4.2E-17 146.3 31.2 329 11-341 22-391 (450)
15 2bpt_A Importin beta-1 subunit 99.6 1.5E-11 5.3E-16 148.9 42.0 438 11-456 6-534 (861)
16 2jdq_A Importin alpha-1 subuni 99.6 2.8E-13 9.6E-18 151.5 24.3 330 46-377 20-390 (450)
17 4b8j_A Importin subunit alpha- 99.5 2.4E-12 8.3E-17 147.8 31.9 339 9-378 74-444 (528)
18 2bpt_A Importin beta-1 subunit 99.5 7.7E-11 2.6E-15 142.7 43.3 479 6-487 131-707 (861)
19 1qgr_A Protein (importin beta 99.5 7.3E-11 2.5E-15 143.2 41.0 446 6-455 125-726 (876)
20 1wa5_B Importin alpha subunit; 99.5 5.8E-12 2E-16 144.8 27.4 333 81-415 87-457 (530)
21 1qgr_A Protein (importin beta 99.5 2.3E-11 7.9E-16 147.6 33.4 471 15-489 223-869 (876)
22 2z6g_A B-catenin; FULL-length, 99.5 4.7E-12 1.6E-16 152.6 26.6 440 48-495 117-626 (780)
23 2z6g_A B-catenin; FULL-length, 99.5 2.2E-11 7.5E-16 146.7 31.6 468 11-490 117-662 (780)
24 1ibr_B P95, importin beta-1 su 99.4 1.1E-11 3.7E-16 138.8 24.2 355 49-416 4-438 (462)
25 1oyz_A Hypothetical protein YI 99.4 2.3E-12 8E-17 135.3 16.2 251 47-372 24-277 (280)
26 4b8j_A Importin subunit alpha- 99.4 8.5E-11 2.9E-15 134.9 30.5 329 83-414 76-442 (528)
27 2z6h_A Catenin beta-1, beta-ca 99.4 7.3E-11 2.5E-15 139.1 30.6 438 43-491 11-527 (644)
28 1jdh_A Beta-catenin; beta-cate 99.4 1.3E-10 4.5E-15 132.7 31.7 435 41-486 12-525 (529)
29 1u6g_C TIP120 protein, CAND1; 99.4 2E-10 6.9E-15 145.2 33.6 480 7-489 131-719 (1230)
30 3ul1_B Importin subunit alpha- 99.4 1.1E-09 3.6E-14 125.6 35.4 329 9-339 57-429 (510)
31 1jdh_A Beta-catenin; beta-cate 99.4 3.2E-10 1.1E-14 129.4 30.9 434 10-449 18-528 (529)
32 2z6h_A Catenin beta-1, beta-ca 99.3 1E-09 3.5E-14 129.3 34.3 436 11-453 16-529 (644)
33 3now_A UNC-45 protein, SD10334 99.3 2.2E-10 7.5E-15 136.3 27.9 365 10-377 291-737 (810)
34 3now_A UNC-45 protein, SD10334 99.3 3E-09 1E-13 126.5 37.1 400 11-414 248-736 (810)
35 3ul1_B Importin subunit alpha- 99.3 3.1E-09 1E-13 121.8 32.8 329 47-377 58-430 (510)
36 1oyz_A Hypothetical protein YI 99.3 3.5E-10 1.2E-14 118.6 22.9 192 11-224 25-218 (280)
37 3tpo_A Importin subunit alpha- 99.3 5.8E-09 2E-13 119.9 34.3 330 8-339 75-448 (529)
38 2vgl_A Adaptor protein complex 99.2 4E-09 1.4E-13 123.6 31.8 388 25-432 59-488 (621)
39 1ibr_B P95, importin beta-1 su 99.2 1.8E-09 6.1E-14 120.6 26.3 362 11-379 3-439 (462)
40 3ltm_A Alpha-REP4; protein eng 99.2 6.8E-10 2.3E-14 111.3 18.2 185 48-272 21-206 (211)
41 3tpo_A Importin subunit alpha- 99.2 1.8E-08 6.2E-13 115.8 31.8 328 47-376 77-448 (529)
42 3ltj_A Alpharep-4; protein eng 99.1 1.5E-09 5E-14 107.9 18.7 181 47-267 15-196 (201)
43 3ltj_A Alpharep-4; protein eng 99.1 4.9E-09 1.7E-13 104.1 18.9 184 8-225 13-196 (201)
44 3ltm_A Alpha-REP4; protein eng 99.1 4.2E-09 1.4E-13 105.4 18.4 184 8-225 18-201 (211)
45 4hxt_A De novo protein OR329; 99.0 1.8E-08 6E-13 102.8 20.0 224 48-273 4-245 (252)
46 4db8_A Armadillo-repeat protei 98.9 1.4E-08 4.7E-13 104.3 15.1 220 6-225 9-249 (252)
47 4hxt_A De novo protein OR329; 98.9 5.1E-08 1.8E-12 99.4 19.1 218 10-227 3-241 (252)
48 4db8_A Armadillo-repeat protei 98.8 3.3E-08 1.1E-12 101.3 14.5 217 49-267 15-249 (252)
49 4db6_A Armadillo repeat protei 98.7 9.7E-08 3.3E-12 95.0 14.4 147 4-150 7-168 (210)
50 3tjz_B Coatomer subunit gamma; 98.7 3.1E-07 1.1E-11 99.3 18.0 263 51-366 73-342 (355)
51 2qk2_A LP04448P; mini spindles 98.7 3.4E-07 1.1E-11 93.9 16.2 197 80-279 14-216 (242)
52 1xm9_A Plakophilin 1; armadill 98.6 2.3E-06 7.9E-11 96.4 23.1 166 83-251 4-195 (457)
53 1wa5_C Importin alpha RE-expor 98.6 0.00024 8.2E-09 87.4 40.6 412 13-451 9-525 (960)
54 2x19_B Importin-13; nuclear tr 98.5 3.8E-05 1.3E-09 94.3 32.1 460 12-484 27-592 (963)
55 3l6x_A Catenin delta-1; cateni 98.5 2.2E-05 7.5E-10 90.4 27.5 355 82-451 49-476 (584)
56 1te4_A Conserved protein MTH18 98.5 4.2E-08 1.4E-12 90.8 3.4 117 11-146 14-130 (131)
57 4ady_A RPN2, 26S proteasome re 98.5 6.3E-05 2.1E-09 90.0 30.9 266 49-341 395-677 (963)
58 4db6_A Armadillo repeat protei 98.5 1.9E-06 6.6E-11 85.5 15.5 187 80-268 11-208 (210)
59 2qk1_A Protein STU2; STU2P, XM 98.5 2.3E-06 8E-11 88.3 15.9 210 85-301 20-246 (249)
60 1te4_A Conserved protein MTH18 98.5 8.7E-08 3E-12 88.6 4.4 117 48-187 14-130 (131)
61 3b2a_A TON_1937, putative unch 98.4 4.5E-06 1.5E-10 83.1 16.4 191 121-319 34-232 (265)
62 1xm9_A Plakophilin 1; armadill 98.4 1.6E-05 5.3E-10 89.6 22.8 294 10-307 45-451 (457)
63 3l6x_A Catenin delta-1; cateni 98.3 7.4E-05 2.5E-09 86.0 25.5 303 10-315 91-486 (584)
64 3nmz_A APC variant protein; pr 98.3 2.9E-05 9.8E-10 87.2 21.0 299 82-383 71-456 (458)
65 3opb_A SWI5-dependent HO expre 98.3 3.5E-05 1.2E-09 90.4 21.9 283 59-344 307-687 (778)
66 2x1g_F Cadmus; transport prote 98.3 5.7E-05 1.9E-09 92.9 24.6 425 14-454 12-575 (971)
67 2qk2_A LP04448P; mini spindles 98.3 1.8E-05 6.1E-10 80.9 16.4 173 51-229 20-207 (242)
68 2db0_A 253AA long hypothetical 98.2 0.0001 3.6E-09 70.4 19.3 209 120-340 32-246 (253)
69 3opb_A SWI5-dependent HO expre 98.1 0.0098 3.4E-07 69.9 37.9 454 19-490 180-727 (778)
70 1wa5_C Importin alpha RE-expor 98.1 0.0003 1E-08 86.4 26.8 243 23-271 375-672 (960)
71 1xqr_A HSPBP1 protein; armadil 98.1 9.8E-05 3.4E-09 78.1 17.6 187 4-191 23-239 (296)
72 2qk1_A Protein STU2; STU2P, XM 98.1 9.2E-05 3.2E-09 76.3 16.8 182 50-231 20-224 (249)
73 3nmw_A APC variant protein; AR 98.0 0.00011 3.6E-09 79.8 18.0 216 58-275 96-340 (354)
74 3m1i_C Exportin-1; heat repeat 98.0 0.0011 3.9E-08 82.2 28.0 432 12-454 19-572 (1049)
75 3u0r_A Apoptosis inhibitor 5; 98.0 0.01 3.4E-07 65.3 31.6 134 11-150 31-164 (507)
76 4ady_A RPN2, 26S proteasome re 97.9 0.024 8.1E-07 68.0 36.4 337 89-492 366-720 (963)
77 1xqr_A HSPBP1 protein; armadil 97.9 0.00015 5.2E-09 76.6 15.5 141 10-150 82-239 (296)
78 3nmz_A APC variant protein; pr 97.9 0.00023 7.9E-09 79.8 16.8 214 58-273 212-454 (458)
79 3nmw_A APC variant protein; AR 97.8 0.00061 2.1E-08 73.8 18.5 219 133-384 97-341 (354)
80 3hs8_A Adaptor protein complex 97.8 9.2E-05 3.1E-09 76.9 11.1 121 644-769 54-179 (273)
81 1kyf_A Alpha-adaptin C; protei 97.8 6.9E-05 2.4E-09 76.9 10.0 123 643-770 27-154 (247)
82 2x19_B Importin-13; nuclear tr 97.8 0.049 1.7E-06 66.5 36.8 434 66-526 430-930 (963)
83 2x1g_F Cadmus; transport prote 97.7 0.014 4.8E-07 71.5 31.5 422 96-526 436-942 (971)
84 3b2a_A TON_1937, putative unch 97.7 0.003 1E-07 63.0 19.7 178 309-490 73-260 (265)
85 3ibv_A Exportin-T; karyopherin 97.7 0.075 2.6E-06 65.2 36.6 426 20-455 19-570 (980)
86 3grl_A General vesicular trans 97.6 0.0066 2.3E-07 69.6 24.1 133 17-151 30-197 (651)
87 2db0_A 253AA long hypothetical 97.6 0.016 5.3E-07 55.7 21.9 197 284-485 40-240 (253)
88 3a6p_A Exportin-5; exportin-5, 97.6 0.17 5.8E-06 63.5 38.1 139 5-149 4-162 (1204)
89 3ibv_A Exportin-T; karyopherin 97.5 0.077 2.6E-06 65.0 33.3 204 58-272 20-263 (980)
90 4hat_C Exportin-1; heat repeat 97.5 0.042 1.4E-06 67.7 30.2 107 42-150 447-570 (1023)
91 1iu1_A Gamma1-adaptin; coated 97.4 0.00023 8E-09 66.7 7.1 70 641-711 33-108 (146)
92 4ffb_C Protein STU2; tubulin f 97.3 0.0014 4.9E-08 68.2 13.1 192 1-229 1-214 (278)
93 3m1i_C Exportin-1; heat repeat 97.3 0.14 4.9E-06 63.2 32.9 158 296-454 436-621 (1049)
94 4ffb_C Protein STU2; tubulin f 97.2 0.0034 1.1E-07 65.3 14.6 184 86-270 14-213 (278)
95 3grl_A General vesicular trans 97.1 0.15 5E-06 58.6 26.7 190 77-272 21-244 (651)
96 2e9g_A AP-1 complex subunit ga 96.9 0.0021 7.1E-08 59.2 7.7 62 641-703 18-83 (131)
97 1lrv_A LRV, leucine-rich repea 96.8 0.0019 6.5E-08 66.0 7.1 186 52-336 56-242 (244)
98 3gjx_A Exportin-1; transport, 96.8 1.6 5.3E-05 53.8 34.0 133 10-149 29-178 (1073)
99 3zy7_A AP-1 complex subunit ga 96.8 0.0021 7.3E-08 58.3 6.5 71 641-712 9-85 (122)
100 3mnm_A ADP-ribosylation factor 96.7 0.0029 9.9E-08 57.4 7.4 70 641-711 13-86 (123)
101 3l9t_A Putative uncharacterize 96.6 0.05 1.7E-06 54.6 15.6 186 1-200 24-217 (240)
102 1gyu_A Adapter-related protein 96.6 0.0042 1.4E-07 57.7 7.1 70 641-711 27-102 (140)
103 3gs3_A Symplekin, LD45768P; he 96.5 0.22 7.6E-06 50.9 20.6 85 62-148 31-118 (257)
104 4hat_C Exportin-1; heat repeat 96.4 2.5 8.7E-05 51.8 32.9 362 81-455 194-622 (1023)
105 2iw3_A Elongation factor 3A; a 96.3 0.19 6.5E-06 60.9 21.7 219 47-270 96-325 (986)
106 1ho8_A Vacuolar ATP synthase s 96.3 1 3.5E-05 49.8 25.4 195 254-451 242-476 (480)
107 3o2t_A Symplekin; heat repeat, 96.2 0.22 7.7E-06 53.8 19.1 132 62-224 41-180 (386)
108 1p4u_A ADP-ribosylation factor 96.0 0.011 3.7E-07 55.7 6.7 51 641-691 31-87 (153)
109 3gjx_A Exportin-1; transport, 95.9 0.16 5.6E-06 62.5 18.2 139 47-188 478-642 (1073)
110 2of3_A ZYG-9; multifunctional 95.7 0.19 6.5E-06 51.7 15.4 180 78-270 43-237 (266)
111 3tt9_A Plakophilin-2; cell adh 95.7 0.12 4.2E-06 52.1 13.6 167 82-250 9-203 (233)
112 2iw3_A Elongation factor 3A; a 95.1 7.2 0.00025 47.3 28.3 253 70-338 43-322 (986)
113 3tt9_A Plakophilin-2; cell adh 94.9 0.055 1.9E-06 54.7 7.9 105 46-150 8-125 (233)
114 3u0r_A Apoptosis inhibitor 5; 94.8 3.5 0.00012 45.5 22.3 120 251-376 39-162 (507)
115 3oc3_A Helicase MOT1, MOT1; re 93.3 0.18 6.1E-06 56.5 8.3 231 15-265 180-432 (800)
116 3a6p_A Exportin-5; exportin-5, 92.7 23 0.0008 44.1 27.6 299 94-394 220-634 (1204)
117 2of3_A ZYG-9; multifunctional 92.7 1.4 4.7E-05 45.3 13.6 173 12-229 49-238 (266)
118 4gmo_A Putative uncharacterize 92.5 0.64 2.2E-05 54.5 12.4 66 85-151 38-107 (684)
119 1lsh_A Lipovitellin (LV-1N, LV 92.0 0.35 1.2E-05 59.7 9.7 118 21-147 407-541 (1056)
120 3l9t_A Putative uncharacterize 91.9 8.3 0.00028 38.6 17.6 164 56-239 50-217 (240)
121 1lrv_A LRV, leucine-rich repea 91.5 0.42 1.4E-05 48.6 8.0 69 49-143 101-169 (244)
122 3o2t_A Symplekin; heat repeat, 91.4 3.5 0.00012 44.5 15.5 137 11-148 27-182 (386)
123 3gs3_A Symplekin, LD45768P; he 90.9 7 0.00024 39.7 16.6 124 25-148 30-172 (257)
124 1lsh_A Lipovitellin (LV-1N, LV 88.8 7.6 0.00026 47.8 17.6 164 309-489 389-572 (1056)
125 4gmo_A Putative uncharacterize 88.5 0.51 1.7E-05 55.4 6.6 145 51-195 39-219 (684)
126 3dad_A FH1/FH2 domain-containi 84.8 15 0.00051 38.7 14.6 82 88-171 125-212 (339)
127 1vsy_5 Proteasome activator BL 83.3 1.1 3.8E-05 54.6 6.0 136 11-150 762-925 (997)
128 2b6c_A Hypothetical protein EF 78.4 10 0.00035 37.4 10.3 150 14-182 60-212 (220)
129 1x5b_A Signal transducing adap 75.4 18 0.00062 33.9 10.5 100 11-110 16-125 (163)
130 3ldz_A STAM-1, signal transduc 74.9 25 0.00084 32.1 11.0 86 24-109 20-113 (140)
131 1t06_A Hypothetical protein; s 74.7 4.7 0.00016 40.4 6.6 73 54-128 116-196 (235)
132 2b6c_A Hypothetical protein EF 74.1 5.7 0.0002 39.3 7.0 83 33-118 114-196 (220)
133 3oc3_A Helicase MOT1, MOT1; re 72.1 26 0.00087 39.6 11.8 127 19-147 273-402 (800)
134 3g2s_A C-terminal fragment of 71.8 32 0.0011 31.7 11.0 104 10-113 11-129 (149)
135 3jxy_A Alkylpurine DNA glycosy 71.6 4 0.00014 40.8 5.2 134 13-156 65-202 (232)
136 3ldz_A STAM-1, signal transduc 70.0 60 0.0021 29.4 12.4 84 249-360 51-135 (140)
137 1x5b_A Signal transducing adap 69.7 53 0.0018 30.6 12.3 86 249-361 61-147 (163)
138 3jxy_A Alkylpurine DNA glycosy 69.0 14 0.00048 36.7 8.6 80 56-144 71-155 (232)
139 3s4w_B Protein FACD2, fanconi 65.3 1.4E+02 0.0049 37.2 17.8 109 87-207 163-271 (1323)
140 1juq_A ADP-ribosylation factor 63.5 99 0.0034 29.0 13.2 88 249-361 59-147 (171)
141 1upk_A MO25 protein; transfera 63.0 1.5E+02 0.0052 31.0 16.8 114 350-467 166-296 (341)
142 3g2s_A C-terminal fragment of 61.6 83 0.0029 28.9 11.6 75 249-346 57-132 (149)
143 1t06_A Hypothetical protein; s 60.9 23 0.0008 35.2 8.4 70 84-153 111-184 (235)
144 3zyq_A Hepatocyte growth facto 60.2 59 0.002 32.1 11.2 96 14-109 13-117 (226)
145 1mhq_A ADP-ribosylation factor 58.5 1.1E+02 0.0038 27.9 13.8 88 249-361 47-135 (148)
146 1yew_A Particulate methane mon 57.0 18 0.00062 38.1 6.7 62 650-711 256-334 (382)
147 3dad_A FH1/FH2 domain-containi 56.6 1.9E+02 0.0067 30.2 18.8 138 13-150 122-287 (339)
148 1mhq_A ADP-ribosylation factor 55.5 59 0.002 29.8 9.5 83 28-110 20-116 (148)
149 2jak_A Serine/threonine-protei 54.4 1.5E+02 0.0051 31.8 13.6 135 351-486 218-362 (392)
150 2npp_B PP2A, B subunit, serine 54.3 2.1E+02 0.007 31.3 15.0 123 364-487 220-351 (449)
151 1upk_A MO25 protein; transfera 54.3 2.1E+02 0.0072 29.9 24.6 105 201-337 212-332 (341)
152 1juq_A ADP-ribosylation factor 53.0 67 0.0023 30.2 9.6 103 11-113 14-131 (171)
153 3zyq_A Hepatocyte growth facto 51.4 1.5E+02 0.005 29.2 12.3 70 249-345 54-123 (226)
154 1dvp_A HRS, hepatocyte growth 48.4 1.1E+02 0.0036 30.0 10.7 79 29-107 25-112 (220)
155 3tj1_A RNA polymerase I-specif 46.9 3.3E+02 0.011 31.2 15.6 123 305-431 130-259 (649)
156 3s4w_B Protein FACD2, fanconi 44.6 5.6E+02 0.019 32.0 27.0 97 120-224 157-253 (1323)
157 3fga_B Serine/threonine-protei 43.4 3.4E+02 0.012 29.1 16.5 134 351-486 173-317 (403)
158 4flb_A Regulation of nuclear P 41.3 1.3E+02 0.0044 26.6 9.3 33 329-361 21-53 (132)
159 1vsy_5 Proteasome activator BL 41.3 31 0.0011 42.0 6.5 117 32-148 829-965 (997)
160 4ay0_A Chaperone protein CAF1M 38.2 31 0.0011 34.0 4.9 96 645-745 12-131 (218)
161 1hu3_A EIF4GII; heat repeat, t 37.8 3.2E+02 0.011 27.2 15.4 49 404-452 147-199 (260)
162 3rfr_A PMOB; membrane, oxidore 36.7 87 0.003 33.3 8.1 63 650-712 290-367 (419)
163 3rk6_A Polyadenylate-binding p 35.1 3.4E+02 0.011 26.7 15.8 60 290-349 17-79 (234)
164 4flb_A Regulation of nuclear P 34.2 2.4E+02 0.0082 24.7 10.1 82 399-484 21-105 (132)
165 3ut4_A CTHE_2751, putative unc 34.0 1.9E+02 0.0063 26.1 8.8 68 66-143 17-84 (134)
166 2kut_A Uncharacterized protein 32.4 94 0.0032 27.5 6.6 56 657-712 15-72 (122)
167 1w9c_A CRM1 protein, exportin 31.7 1.7E+02 0.0059 30.4 9.5 181 291-490 44-245 (321)
168 3eg5_B Protein diaphanous homo 31.6 4.9E+02 0.017 27.5 14.1 68 253-320 133-210 (383)
169 1elk_A Target of MYB1; superhe 31.0 1.8E+02 0.0063 26.6 8.7 55 99-156 34-89 (157)
170 1z5h_A Tricorn protease intera 29.7 5.2E+02 0.018 30.2 14.5 67 159-225 489-555 (780)
171 3s51_A Protein FACI, fanconi a 28.2 5.8E+02 0.02 31.7 14.4 249 32-288 349-639 (1308)
172 1vsy_4 Proteasome activator BL 28.0 2.4E+02 0.0084 33.2 11.1 72 76-148 334-411 (799)
173 1elk_A Target of MYB1; superhe 27.4 3.3E+02 0.011 24.8 9.9 106 4-109 10-129 (157)
174 3d9j_A RNA-binding protein 16; 27.4 2.8E+02 0.0096 25.0 9.2 34 327-360 21-54 (145)
175 1vdy_A Hypothetical protein (R 26.0 3E+02 0.01 24.9 8.9 65 172-237 21-87 (140)
176 1ho8_A Vacuolar ATP synthase s 25.9 79 0.0027 34.9 5.9 58 93-150 417-477 (480)
177 2bnx_A Diaphanous protein homo 23.1 6.8E+02 0.023 26.4 15.1 38 282-319 106-147 (386)
178 1z5h_A Tricorn protease intera 22.1 5.5E+02 0.019 30.0 12.7 126 318-448 498-631 (780)
179 1z9l_A Vesicle-associated memb 22.1 1.4E+02 0.0049 26.2 6.0 50 658-712 27-77 (128)
180 4fu3_A Regulation of nuclear P 22.0 1.1E+02 0.0037 27.2 5.2 33 329-361 20-52 (135)
181 1r4x_A Gamma1-COP, coatomer ga 21.4 23 0.00079 36.2 0.5 109 657-769 57-181 (275)
182 2qc7_A ERP31, ERP28, endoplasm 21.4 1.8E+02 0.0063 28.7 7.3 60 317-377 135-198 (240)
183 3qml_C Protein SLS1, nucleotid 20.9 4E+02 0.014 27.5 9.6 19 3-21 16-34 (315)
184 2v75_A Nuclear polyadenylated 20.6 3E+02 0.01 23.1 6.9 34 293-326 29-62 (104)
185 4ep8_B Urease subunit beta; al 20.4 1.5E+02 0.0051 25.2 5.1 53 657-709 17-81 (101)
No 1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=5.6e-91 Score=817.12 Aligned_cols=547 Identities=73% Similarity=1.165 Sum_probs=516.4
Q ss_pred CCCCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 004132 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (772)
Q Consensus 1 mt~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~ 80 (772)
|++|+|++++|++++++++++|+++||+||+|++++++.+||.+++++|+|+||++|+||.+|++|||+||+++.+++.+
T Consensus 41 ~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~ 120 (591)
T 2vgl_B 41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITE 120 (591)
T ss_dssp HHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHH
T ss_pred HHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC-ccccc
Q 004132 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEIT 159 (772)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~-~~~l~ 159 (772)
++.++|++++.|++|||||+|+.|++|+|+.+|+.+++.+|++.+..+|+|+|++|+.+|+.+|.+|+..++.. .+.+.
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 99999999999999999999999999999999999987789999999999999999999999999999887654 56777
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhc-CChHHHHHH
Q 004132 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI-TSTDVVRNL 238 (772)
Q Consensus 160 ~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i-~~~~~~~~l 238 (772)
+..+.+|++.+.+++||+|+++|++|+.|.|.++++...+++.+.++++|.|++|+++|+++++++.+.+ .+++.++.+
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~ 280 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML 280 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999999876544 245667777
Q ss_pred HHhcccchhhccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHH
Q 004132 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE 318 (772)
Q Consensus 239 ~~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~ 318 (772)
..++.++|++|+++++|+||+||++|..+++.+|+.+.+|++.|+|+++||.+||++|+++|+++++++|++.|++||.+
T Consensus 281 ~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~ 360 (591)
T 2vgl_B 281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKE 360 (591)
T ss_dssp HHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHH
Confidence 77888999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCC
Q 004132 319 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD 398 (772)
Q Consensus 319 y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~ 398 (772)
|+++.|.+|+++++++||.||.++++.++||+++|+++++..++++.++++.+++++++++|+.+++++..|++.++++.
T Consensus 361 ~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~ 440 (591)
T 2vgl_B 361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD 440 (591)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred hHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHH
Q 004132 399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478 (772)
Q Consensus 399 ~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dv 478 (772)
+|+++++++|++||||+.+++++++++.++++|.++++.||.++|+|++|++.+.|++ .++.++++++.++.++.|+||
T Consensus 441 ~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~ev 519 (591)
T 2vgl_B 441 EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDL 519 (591)
T ss_dssp SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHH
T ss_pred CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHH
Confidence 9999999999999999999999999999999999999999999999999999999975 678999999998778899999
Q ss_pred HhhHHHHHHHhcCCHHHHHhhhccCCCCCCCCCCCCChHHHHHHHHhcCcccccccCCchhhhccccccC
Q 004132 479 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTA 548 (772)
Q Consensus 479 rdRA~~y~~Ll~~~~~~~~~ivl~~~p~~~~~~~~~~~~~l~~l~~~~~tl~~vy~kp~~~~~~~~~~~~ 548 (772)
||||++||+||+.+++.++++|+++||++++.++.++++++++|+.+|||+|+||||||+.|+++.+...
T Consensus 520 rdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~~~~ 589 (591)
T 2vgl_B 520 RDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSHGIH 589 (591)
T ss_dssp HHHHHHHHTTTTTCTTHHHHHHTSCCCCCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC-------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHcCCCCCCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHcCCccccc
Confidence 9999999999998889999999999999999888999999999999999999999999999998876543
No 2
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=1.5e-82 Score=747.55 Aligned_cols=509 Identities=20% Similarity=0.312 Sum_probs=439.9
Q ss_pred CCCCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 004132 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (772)
Q Consensus 1 mt~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~ 80 (772)
|++|+|+|++|++|+++++|+|+++||+||||++.|++.+||+++|+||+|+||++|+||++||+|||+||+|+++++++
T Consensus 66 ~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~ 145 (621)
T 2vgl_A 66 FLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAE 145 (621)
T ss_dssp HHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh--CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccc
Q 004132 81 YLCDPLQRCL--KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (772)
Q Consensus 81 ~l~~~v~~~L--~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l 158 (772)
++.++|++++ .|++|||||+|++|++|+|+.+|+.++..+|.+.+.++|+|+||+|+.+|+.++.+|+..++.....+
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~ 225 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTS 225 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHH
Confidence 9999999999 99999999999999999999999999866799999999999999999999999999998875432223
Q ss_pred cHHHHHHHHHHhh--cC-----------ChhHHHHHHHHHhccccC-CHHHHHHH---HHHHhH---------hhcCCCH
Q 004132 159 TSHTLSKLLTALN--EC-----------TEWGQVFILDALSRYKAA-DAREAENI---VERVTP---------RLQHANC 212 (772)
Q Consensus 159 ~~~~~~~Ll~~L~--~~-----------~ew~qv~iL~~L~~~~~~-~~~e~~~i---l~~v~~---------~L~~~n~ 212 (772)
.+..++.|.+.+. ++ +||+|+++|++|+.|.+. +++..+.+ ++.+.. +++|.|+
T Consensus 226 ~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~ 305 (621)
T 2vgl_A 226 VSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNA 305 (621)
T ss_dssp HHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccch
Confidence 3333333333222 24 799999999999999985 44544433 334442 3456666
Q ss_pred --HHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhCh--hhhhhhcce-eeecc
Q 004132 213 --AVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP--TILAHEIKV-FFCKY 286 (772)
Q Consensus 213 --aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p--~~~~~~~~i-f~~~~ 286 (772)
||+|||+++++++. .+++..+ .++..|++++ ++++|+||+||++|..+++.+| ..++.|... +.|+.
T Consensus 306 ~~aVl~ea~~~i~~l~---~~~~~~~----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~ 378 (621)
T 2vgl_A 306 KNAVLFEAISLIIHHD---SEPNLLV----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALK 378 (621)
T ss_dssp HHHHHHHHHHHHHHHC---CCHHHHH----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC---CcHHHHH----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhc
Confidence 99999999999863 2444444 3556677877 5899999999999999999986 678888764 56777
Q ss_pred -CCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhH
Q 004132 287 -NDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVV 365 (772)
Q Consensus 287 -~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~ 365 (772)
++|.+||++||++|+.|+|++|++.|++||++|+++.|.+|++++|++||.||++|++.++||+++|+++++.+|+|+.
T Consensus 379 ~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~ 458 (621)
T 2vgl_A 379 TERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVS 458 (621)
T ss_dssp TCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSC
T ss_pred cCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccch
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHH-HHHHHHHHHhhhccccCC-----HHHHHHHHhhhCCCCCHHHH
Q 004132 366 QEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPE-AKASMIWIIGEYAERIDN-----ADELLESFLESFPEEPAQVQ 439 (772)
Q Consensus 366 ~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~-a~~~~iwilGEy~~~i~~-----~~~~L~~l~~~f~~e~~~vq 439 (772)
+|+|.++++++.++|+.+++++..|++.+++....+ ...+++|++||||+.+++ +.++++.+.++|..+++.||
T Consensus 459 ~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~ 538 (621)
T 2vgl_A 459 EEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTR 538 (621)
T ss_dssp SHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHH
Confidence 999999999999999999999999999987644332 235566999999998876 45899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHhhhc-CCCChHHHhhHHHHHHHhcCCHHHHHhhhccCCCCCCCCCCCCChHH
Q 004132 440 LQLLTATVKLFLKKPTEGPQQMIQVVLNNATV-ETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSL 518 (772)
Q Consensus 440 ~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~-~s~~~dvrdRA~~y~~Ll~~~~~~~~~ivl~~~p~~~~~~~~~~~~~ 518 (772)
.++|||++|++.+.|+ .++.++.+|+.++. ++.|+||||||++||+||+.+++.++++++++||++++. +..+
T Consensus 539 ~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~~~~~~vl~~~P~~~~~----~~~l 612 (621)
T 2vgl_A 539 ALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPER----ESSI 612 (621)
T ss_dssp HHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCSTTTTTTSSSCCCCCCC--------
T ss_pred HHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccCHHHHHHHHhhcCCCCCCc----chHH
Confidence 9999999999999885 78899999998876 468999999999999999987778899999999999864 3455
Q ss_pred HHHH
Q 004132 519 LDEL 522 (772)
Q Consensus 519 l~~l 522 (772)
+++|
T Consensus 613 l~~l 616 (621)
T 2vgl_A 613 LAKL 616 (621)
T ss_dssp ----
T ss_pred HHHH
Confidence 5555
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=4.3e-77 Score=702.34 Aligned_cols=503 Identities=20% Similarity=0.285 Sum_probs=431.9
Q ss_pred CCCCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 004132 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE 80 (772)
Q Consensus 1 mt~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~ 80 (772)
|++|+|++++|++|+++++++|+++||+||||++.|++++||+++|+||+|+|||+|+||.+|++|||+||+|+.+++++
T Consensus 62 ~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~ 141 (618)
T 1w63_A 62 HMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCR 141 (618)
T ss_dssp HHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHH
T ss_pred HHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC--cccc
Q 004132 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP--IFEI 158 (772)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~--~~~l 158 (772)
++.+.|.+++.|++|||||+|++|++|+|+.+|+.++ +|++.+..+|+|+|++|+.+|+.+|.+|+..++.. .+.-
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~--~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~ 219 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME--MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRK 219 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG--GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH--HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 9999999999999999999999999999999999987 49999999999999999999999999998654321 1222
Q ss_pred cHHHHHHHHHHhh------------cCChhHHHHHHHHHhccccCCHHHHHH---HHHHHhH---hhcCCCHHHHHHHHH
Q 004132 159 TSHTLSKLLTALN------------ECTEWGQVFILDALSRYKAADAREAEN---IVERVTP---RLQHANCAVVLSAVK 220 (772)
Q Consensus 159 ~~~~~~~Ll~~L~------------~~~ew~qv~iL~~L~~~~~~~~~e~~~---il~~v~~---~L~~~n~aVv~eaik 220 (772)
..+.+.++|..+. ..+||+|+.++++|+.|.+.+++.... ++..+.. .++|.+.+|++||++
T Consensus 220 ~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~ 299 (618)
T 1w63_A 220 LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVL 299 (618)
T ss_dssp THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 2222333333321 258999999999999999887765544 4444443 245677899999999
Q ss_pred HHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhChhhhhhhc-ceeeeccCCcHhHHHHHHH
Q 004132 221 MILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEI-KVFFCKYNDPIYVKMEKLE 298 (772)
Q Consensus 221 ~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~~~~~~~-~if~~~~~d~~~Ik~~kL~ 298 (772)
+++++.+ ++... ..+.++|+.++ ++++|+||+||++|..+++.+|.++.+|. .+|+|++++|.+||++|++
T Consensus 300 ~i~~l~~---~~~l~----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~ale 372 (618)
T 1w63_A 300 TIMDIKS---ESGLR----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAME 372 (618)
T ss_dssp HHHHSCC---CHHHH----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHH
T ss_pred HHHhcCC---CHHHH----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHH
Confidence 9998521 33222 23556677777 57999999999999999999999999887 5789999999999999999
Q ss_pred HHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Q 004132 299 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRR 378 (772)
Q Consensus 299 lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~ 378 (772)
+|+.|++++|++.|++||.+|+.+.|.+|+++++++||.||.+|++..+||+++++++++..++++.+++|.++++++++
T Consensus 373 lL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~ 452 (618)
T 1w63_A 373 LSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN 452 (618)
T ss_dssp HHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHhccc-C-ChHHHHHHHHHHHhhhccccCC---------------HHHHHHHHhhhCCCCCHHHHHH
Q 004132 379 YPNTYESIIATLCESLDT-L-DEPEAKASMIWIIGEYAERIDN---------------ADELLESFLESFPEEPAQVQLQ 441 (772)
Q Consensus 379 ~p~~~~~ii~~L~~~l~~-~-~~p~a~~~~iwilGEy~~~i~~---------------~~~~L~~l~~~f~~e~~~vq~~ 441 (772)
+|+.+++++..|++.+++ + .++.+ .+++|++||||+.+.+ ..++|+.+++.| .+++.||.+
T Consensus 453 ~p~l~~~~v~~L~~~l~~~~~~~~~~-~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~ 530 (618)
T 1w63_A 453 SVEMHAYTVQRLYKAILGDYSQQPLV-QVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGY 530 (618)
T ss_dssp SCSTHHHHHHHHHHHHHHCCSCSHHH-HHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHhcccccHHHH-HHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHH
Confidence 999999999999999974 3 35555 4689999999987743 356777777777 689999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHHHHHhhhccCCCCCCCCCCCCChHH
Q 004132 442 LLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSL 518 (772)
Q Consensus 442 lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~~~~~~~~ivl~~~p~~~~~~~~~~~~~ 518 (772)
+|||++|++.+.|+ .++.++.+|+.+. ++.|+||||||++||+|++.+++ ++++++++||++++.++..++++
T Consensus 531 ~lta~~Kl~~~~~~--~~~~l~~~L~~~~-~~~d~evrdRA~~y~~ll~~~~~-~~~~vl~~~P~~~~~~~~~~~~~ 603 (618)
T 1w63_A 531 ALTAIMKLSTRFTC--TVNRIKKVVSIYG-SSIDVELQQRAVEYNALFKKYDH-MRSALLERMPVMEKVTTNGPSEI 603 (618)
T ss_dssp HHHHHHHHHTTCSS--CHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTTT-HHHHHHSCCCCCCC---------
T ss_pred HHHHHHHHHHhCcc--hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCcHH-HHHHHhhcCCCCCccccCCcccc
Confidence 99999999999986 5889999999876 56899999999999999987654 78899999999987765554443
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=2.8e-50 Score=436.13 Aligned_cols=289 Identities=16% Similarity=0.257 Sum_probs=206.0
Q ss_pred CCCCCC-----ccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh
Q 004132 1 MTVGKD-----VSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV 75 (772)
Q Consensus 1 mt~G~D-----vs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~ 75 (772)
|+.|++ ++.+|++|+|+++|+|+++|||||||++.|++..+| ++|+||+|+||++|+||++||+|||+||+|+.
T Consensus 55 ~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e-~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~ 133 (355)
T 3tjz_B 55 INQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED-VIIVTSSLTKDMTGKEDSYRGPAVRALCQITD 133 (355)
T ss_dssp HHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC-GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC
Confidence 567888 789999999999999999999999999999999554 78999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCc
Q 004132 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (772)
Q Consensus 76 ~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~ 155 (772)
++|++++.+++++++.|++|||||+|++|++|+++.+||.++. |++.+.++++|+||+|+++|+++|++|+++++
T Consensus 134 ~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~--~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--- 208 (355)
T 3tjz_B 134 STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKR--WVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--- 208 (355)
T ss_dssp TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHT--THHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHH--HHHHHHHHhcCCCccHHHHHHHHHHHHHhhch---
Confidence 9999999999999999999999999999999999999999984 99999999999999999999999999987642
Q ss_pred ccccHHHHHHHHHHhhcC---ChhHHHHHHHHHhccccCC-HHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCC
Q 004132 156 FEITSHTLSKLLTALNEC---TEWGQVFILDALSRYKAAD-AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITS 231 (772)
Q Consensus 156 ~~l~~~~~~~Ll~~L~~~---~ew~qv~iL~~L~~~~~~~-~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~ 231 (772)
..+.+|+..+.++ +||+|+.++|+++.|.+.+ +++.+.+++.+.++|+|.|++|+|||+++|+.+.. .
T Consensus 209 -----~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~-- 280 (355)
T 3tjz_B 209 -----LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-C-- 280 (355)
T ss_dssp -----HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred -----HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-C--
Confidence 3578888888775 7999999999999999988 67889999999999999999999999999997532 1
Q ss_pred hHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhChhhhhhhc-ceeeeccCCcHhHHHHHHHHHHHhccc
Q 004132 232 TDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEI-KVFFCKYNDPIYVKMEKLEIMIKLASD 306 (772)
Q Consensus 232 ~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~~~~~~~-~if~~~~~d~~~Ik~~kL~lL~~L~n~ 306 (772)
+. .....++.+|..++ ++++|+||+||++|..+++++|++++.|. .+..|..|.+.+|+..|+..|++.++|
T Consensus 281 ~~---~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 281 SA---KELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp ----------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred CH---HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhccCC
Confidence 11 22235677787777 58999999999999999999999999875 467899999999999999999998876
No 5
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=100.00 E-value=1.7e-36 Score=313.24 Aligned_cols=140 Identities=38% Similarity=0.549 Sum_probs=135.1
Q ss_pred CCCCCccccccCCCCCCeEEEEEEeeeCCeeEEEEEEEecCCCCccccceeeccCccCcccCCCCCCC-cCCCCCeeeEE
Q 004132 630 SPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVP-QLQPGTSGRTL 708 (772)
Q Consensus 630 ~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~fgl~~~~~~~~~-~l~p~~~~~~~ 708 (772)
++.+|+.+|+++.+|+||+|+|+|.|++|+++|+|+|+|+++++|++|+||||||+|||+|++++++| +|+|||+.+++
T Consensus 27 ~~~~p~~~~l~~~~g~GLeI~g~f~r~~g~i~l~l~~~N~s~~~is~faIQfNkNsFGL~p~~~~~~~~~L~pgqs~~v~ 106 (258)
T 2g30_A 27 GYVAPKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVS 106 (258)
T ss_dssp CCCCCCEEEECGGGTTTEEEEEEEEEETTEEEEEEEEEECSSSCBCCCEEEECCBTTCCEESSCCCCCSCBCTTCEEEEE
T ss_pred CCCCchhhcccccCCCcEEEEEEEEEeCCEEEEEEEEecCCccceeeeEEEEcccccCcccCccccCCCccCCCCcEEEE
Confidence 45688999999999999999999999999999999999999999999999999999999999998885 99999999999
Q ss_pred EeeeecCCCCCCCCCcchhhhhhcCCCCeEEEeeccccchhcccCCCCChhhHHHhcccccc
Q 004132 709 LPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLEVKTCSFV 770 (772)
Q Consensus 709 ~~l~~~~~~~~~~~~~~lqvAik~n~~~v~yf~~~~p~~~l~~~~g~~~~~~F~~~W~~~~~ 770 (772)
|||+++++.++++|.++||||||||.| ||||++++|++++|.|+|+|+|++|++.||+||.
T Consensus 107 lpl~~~~~~~~~~p~~~LQVAIKtn~~-vfYF~~~ipl~~l~~e~g~m~~~~F~~~Wk~ip~ 167 (258)
T 2g30_A 107 LPLNTLGPVMKMEPLNNLQVAVKNNID-VFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPN 167 (258)
T ss_dssp EEEESCSCBCCCSSTTEEEEEEECSSC-EEEEEEECCGGGGBCSCCCCCHHHHHHHHHHSCG
T ss_pred EeeecCCcccCCCCCchheeeeecCCc-eEEEEeecCHHHhcCCcCccCHHHHHHHHhhCCC
Confidence 999999999999999999999999997 9999999999999999999999999999999986
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.80 E-value=4.1e-17 Score=188.93 Aligned_cols=479 Identities=13% Similarity=0.088 Sum_probs=329.8
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHH--HHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hhhhHHHH
Q 004132 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLA--ILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKITEYL 82 (772)
Q Consensus 8 s~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~--lL~iNtl~kDl~~~np~iralALrtl~~I~---~~ei~~~l 82 (772)
..+++.+.+++.+++...|+.+--.+..++...++-. -.+...+.+-.+++++.+|..|.+.++.+. .+.+.+.+
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l 165 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4456666667778888899988888888887765421 123444455557788999999988877653 35566788
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHH
Q 004132 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (772)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~ 162 (772)
.+.+.+++.|+++.||+.|+.++.++.+..+.......+++.+..+++|.++.|...|+.+|..+....+... .....
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~ 243 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED--LEALV 243 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH--HHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHH--HHHHH
Confidence 8889999999999999999999999987655321123478889999999999999999999999887543211 11112
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHhccccC-CH-HHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHH
Q 004132 163 LSKLLTALNECTEWGQVFILDALSRYKAA-DA-REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240 (772)
Q Consensus 163 ~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~-~~-~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~ 240 (772)
+..+...+.+.+...+....+.|..+... ++ .....+++.+...+++.++.|...|+.++..+...+...........
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 22233333455544666666666655421 11 12345677778888999999999999988876654433211112233
Q ss_pred hcccchhhccC-CchhHHHHHHHHHHHHHhhCh-hhhhhhc-cee-eeccCCcHhHHHHHHHHHHHhcccc----cHHHH
Q 004132 241 KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP-TILAHEI-KVF-FCKYNDPIYVKMEKLEIMIKLASDR----NIDQV 312 (772)
Q Consensus 241 ~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p-~~~~~~~-~if-~~~~~d~~~Ik~~kL~lL~~L~n~~----Nv~~I 312 (772)
.+.+.+..+++ .++.+|..++..+..++...+ +.+.+++ ..| .++.+++..||..+++.|..++..- ..+.+
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 403 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45555666664 678999999999988875432 1122222 122 2345666889999998887776532 24667
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCccc--HHHHHH
Q 004132 313 LLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA--AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT--YESIIA 388 (772)
Q Consensus 313 l~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~--~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~--~~~ii~ 388 (772)
+..|.+++.+.+..++..++.+|+.++..+... .+..+..++.++......|+..++..+..+....... ...+++
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp 483 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 888888888888889999999999999876442 2456788888888877789999999998888765432 345566
Q ss_pred HHHHhcccCChHHHHHHHHHHHhhhccccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 004132 389 TLCESLDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVV 465 (772)
Q Consensus 389 ~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~---~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~v 465 (772)
.+.+.+.+ .++..|..++|++|+.+..+.. .+.++..+++.+.+..++||..++.++.+++.....+...+.+...
T Consensus 484 ~l~~~~~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~ 562 (588)
T 1b3u_A 484 KVLAMSGD-PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI 562 (588)
T ss_dssp HHHHTTTC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred HHHHHhhC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 66655443 4577899999999998765432 2456667777778889999999999999998765432112344444
Q ss_pred HHhhhcCCCChHHHhhHHHHHHHhc
Q 004132 466 LNNATVETDNPDLRDRAYIYWRLLS 490 (772)
Q Consensus 466 l~~~~~~s~~~dvrdRA~~y~~Ll~ 490 (772)
+.... ++.|++||+.|..-..-++
T Consensus 563 l~~l~-~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 563 LEKLT-QDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHT-TCSSHHHHHHHHHHHHHTT
T ss_pred HHHHc-CCCchhHHHHHHHHHHHhh
Confidence 54444 4579999999987765443
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.72 E-value=8.1e-16 Score=178.02 Aligned_cols=430 Identities=11% Similarity=0.102 Sum_probs=296.0
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhccCCCcH-HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC----hhhhHHHHHHH
Q 004132 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDL-AILAVNTFVKDSQDPNPLIRALAVRTMGCIR----VDKITEYLCDP 85 (772)
Q Consensus 11 f~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl-~lL~iNtl~kDl~~~np~iralALrtl~~I~----~~ei~~~l~~~ 85 (772)
.+-+.++..+++...|..+...+..++..-++. .--+++.+.+-++|+++.+|..|+++++.+. .+...+.+.+.
T Consensus 128 ~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~ 207 (588)
T 1b3u_A 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPM 207 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHH
Confidence 334445667777788887777777776654432 2234566667778999999999999999873 44556778888
Q ss_pred HHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHH
Q 004132 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSK 165 (772)
Q Consensus 86 v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~ 165 (772)
+.+++.|.++.||+.|+.++.++....++......+++.+..++.|.++.|+.+|+.+|..+...-+... .....+..
T Consensus 208 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~ 285 (588)
T 1b3u_A 208 FSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPA 285 (588)
T ss_dssp HHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHH
Confidence 9999999999999999999999987765422122477888999999999999999999999876432211 11223555
Q ss_pred HHHHhhcCChhHHHHHHHHHhccccC---CH---HHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH
Q 004132 166 LLTALNECTEWGQVFILDALSRYKAA---DA---REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC 239 (772)
Q Consensus 166 Ll~~L~~~~ew~qv~iL~~L~~~~~~---~~---~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~ 239 (772)
+++.+.+.++..+......|..+... +. .....+++.+...+++.++.|...++.++..+.+.+.... ..
T Consensus 286 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~ 361 (588)
T 1b3u_A 286 FQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN----TI 361 (588)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH----HH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH----HH
Confidence 66667788888887777766655422 11 2345677777788899999999999988876654332221 12
Q ss_pred HhcccchhhccC-CchhHHHHHHHHHHHHHhhCh-hhhhhh-cc-eeeeccCCcHhHHHHHHHHHHHhccc----ccHHH
Q 004132 240 KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP-TILAHE-IK-VFFCKYNDPIYVKMEKLEIMIKLASD----RNIDQ 311 (772)
Q Consensus 240 ~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p-~~~~~~-~~-if~~~~~d~~~Ik~~kL~lL~~L~n~----~Nv~~ 311 (772)
..+.+.+..+++ .++++|..++.++..+....+ +...+. +. +..+..+++..+|..+++.+..++.. .....
T Consensus 362 ~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 441 (588)
T 1b3u_A 362 EHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK 441 (588)
T ss_dssp HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 245666667775 578999999999998886542 111111 11 11234566788999999999887642 22246
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HHHHhhccchhHHHHHHHHHHHHHhCcc--cHHH
Q 004132 312 VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVL----LELIKIKVNYVVQEAIIVIKDIFRRYPN--TYES 385 (772)
Q Consensus 312 Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~L----l~ll~~~~~~v~~e~i~~l~~i~~~~p~--~~~~ 385 (772)
++.-+..++.+.+.++|+.++.+++.++..+.+ +|+.+.+ .+++......++..++..+..+....+. ....
T Consensus 442 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~ 519 (588)
T 1b3u_A 442 LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKH 519 (588)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 788888888898999999999999999987754 3444444 4444444445677777777766553221 2345
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHhhhccccCCH---HHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 004132 386 IIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA---DELLESFLESFPEEPAQVQLQLLTATVKL 449 (772)
Q Consensus 386 ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~~---~~~L~~l~~~f~~e~~~vq~~lLta~~Kl 449 (772)
+++.+.+.+++ ..+++|..++|.+|+++..+... +.++..+..-..+.+..||..+..|+.++
T Consensus 520 ~~~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 520 MLPTVLRMAGD-PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp THHHHHHGGGC-SCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhhCCC-CCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 67777777765 46889999999999998765431 23333343444677889999888887765
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.68 E-value=4.2e-14 Score=172.18 Aligned_cols=480 Identities=16% Similarity=0.157 Sum_probs=319.0
Q ss_pred chhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHH----HHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh--------h
Q 004132 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLA----ILAVNTFVKDSQDPNPLIRALAVRTMGCIRV--------D 76 (772)
Q Consensus 9 ~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~----lL~iNtl~kDl~~~np~iralALrtl~~I~~--------~ 76 (772)
.++..+.++++.++...|+-++-.+..+++..|+.. --+++.+.+-++|.++.+|..|+.++..+.. +
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~ 294 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV 294 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 445566677888899999999999998888776532 2345666777788999999999988877753 2
Q ss_pred hhHHHHHHHHHhhh-----------CC-----------CChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCCh
Q 004132 77 KITEYLCDPLQRCL-----------KD-----------DDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNP 134 (772)
Q Consensus 77 ei~~~l~~~v~~~L-----------~d-----------~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~ 134 (772)
...+.+++.+.+.+ .| .+..||+.|+.|+.++....++.+-. .+++.+..++.|.++
T Consensus 295 ~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~-~l~~~l~~~l~~~~~ 373 (852)
T 4fdd_A 295 RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLP-HILPLLKELLFHHEW 373 (852)
T ss_dssp TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHhcCCCH
Confidence 23446667777776 44 45679999999999999887765432 478889999999999
Q ss_pred hHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCC-----HHHHHHHHHHHhHhhcC
Q 004132 135 MVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAAD-----AREAENIVERVTPRLQH 209 (772)
Q Consensus 135 ~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~-----~~e~~~il~~v~~~L~~ 209 (772)
.++.+|+.++..|.+..+...-....+.+..+++.+.+.++-.+......|.++...- ......+++.+...+++
T Consensus 374 ~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d 453 (852)
T 4fdd_A 374 VVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD 453 (852)
T ss_dssp HHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC
Confidence 9999999999999764322112334566777888888888888887888887775321 12345677888888888
Q ss_pred CCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhC------hhhhhhhc---
Q 004132 210 ANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR------PTILAHEI--- 279 (772)
Q Consensus 210 ~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~------p~~~~~~~--- 279 (772)
.++.|.-.|+.++..+.+.... . +......+.+.|..+++ .+.....+++.++..++..- +..+..-+
T Consensus 454 ~~~~vr~~a~~aL~~l~~~~~~-~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l 531 (852)
T 4fdd_A 454 SNKRVQEAACSAFATLEEEACT-E-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL 531 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHHGG-G-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhH-h-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHH
Confidence 8999999999998876543321 1 11122334444555554 34455566777777776432 11221111
Q ss_pred -ceeeeccCCcHhHHHHHHHHHHHhcccc--c----HHHHHHH----HHHh-------------hhhccHHHHHHHHHHH
Q 004132 280 -KVFFCKYNDPIYVKMEKLEIMIKLASDR--N----IDQVLLE----FKEY-------------ATEVDVDFVRKAVRAI 335 (772)
Q Consensus 280 -~if~~~~~d~~~Ik~~kL~lL~~L~n~~--N----v~~Il~E----L~~y-------------~~~~d~~~~~~~v~aI 335 (772)
+.+..+.+++..++ ..++.+..++..- . ...++.. +.++ ....|.+++..++..|
T Consensus 532 ~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l 610 (852)
T 4fdd_A 532 IQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLL 610 (852)
T ss_dssp HHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHH
T ss_pred HHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHH
Confidence 11112234444443 5666666554321 1 2233222 2222 1123678999999999
Q ss_pred HHHHHhhhhhHH------HHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccH----HHHHHHHHHhcccCChHHHHHH
Q 004132 336 GRCAIKLERAAE------RCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY----ESIIATLCESLDTLDEPEAKAS 405 (772)
Q Consensus 336 g~la~k~~~~~~------~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~----~~ii~~L~~~l~~~~~p~a~~~ 405 (772)
|.++..+..... .+++.+++++......|++++...+.++.+..++.. ..++..+.+.++. .+++++..
T Consensus 611 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~-~~~~v~~~ 689 (852)
T 4fdd_A 611 SGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP-EFISVCNN 689 (852)
T ss_dssp HHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCT-TSHHHHHH
T ss_pred HHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc-cchHHHHH
Confidence 999988765433 457888888887778899999999999988776532 4456667777743 57889999
Q ss_pred HHHHHhhhccccCC-----HHHHHHHHhhhCCC--CCHHHHHHHHHHHHHHhhcCCCC---ChHHHHHHHHHhhhcCCCC
Q 004132 406 MIWIIGEYAERIDN-----ADELLESFLESFPE--EPAQVQLQLLTATVKLFLKKPTE---GPQQMIQVVLNNATVETDN 475 (772)
Q Consensus 406 ~iwilGEy~~~i~~-----~~~~L~~l~~~f~~--e~~~vq~~lLta~~Kl~~~~p~~---~~~~~v~~vl~~~~~~s~~ 475 (772)
++|.+|+++..++. ...++..++..+.. .+..++..+..++.|+..++|+. ...+.+...++. .....|
T Consensus 690 a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~-l~~~~d 768 (852)
T 4fdd_A 690 ATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTS-LRNIRD 768 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHH-HHTSCS
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHH-hccccc
Confidence 99999998765532 35677776665543 35688999999999999987642 134444544443 333456
Q ss_pred hHHHhhHHHH-HHHhcCCHH
Q 004132 476 PDLRDRAYIY-WRLLSTDPE 494 (772)
Q Consensus 476 ~dvrdRA~~y-~~Ll~~~~~ 494 (772)
.+.++.|+.. ..++..+|+
T Consensus 769 ~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 769 NEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp SHHHHHHHHHHHHHHHHCGG
T ss_pred cHHHHHHHHHHHHHHHhChH
Confidence 6777777654 344455555
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.64 E-value=9.2e-14 Score=169.17 Aligned_cols=413 Identities=16% Similarity=0.184 Sum_probs=268.7
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh---hhhH----HHHHHHHHhh
Q 004132 17 CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV---DKIT----EYLCDPLQRC 89 (772)
Q Consensus 17 l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~---~ei~----~~l~~~v~~~ 89 (772)
...++|.+.||-+.-.+..+ +.+|+.......- ...+.+.++.+|.+|.-.+-+.-. ..+- +.+-..+.++
T Consensus 21 ~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~i-l~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~ 98 (852)
T 4fdd_A 21 ESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIFV-LTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNN 98 (852)
T ss_dssp HHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHHHH-HHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTT
T ss_pred HHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHHHH-HhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 33566777777777777654 4456644333333 334456677777777655543321 2232 2344555566
Q ss_pred hCCCChHHHHHHHHHHHHHHhhcc-ccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHH
Q 004132 90 LKDDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLT 168 (772)
Q Consensus 90 L~d~~pyVRK~Aa~~l~kl~~~~p-~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~ 168 (772)
+.|+++.||++|+.++..+.+.++ +.-+ ++++.|..++.+.++.++..|+.+|..|++..+.. + .
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~~~~~wp--~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~--------~----~ 164 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI--------L----D 164 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTTTTCT--THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH--------H----H
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcCccccH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH--------h----c
Confidence 677777777777777777777652 2222 46677777777777777777777777766543210 0 0
Q ss_pred HhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhh
Q 004132 169 ALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVT 248 (772)
Q Consensus 169 ~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~ 248 (772)
. .+. ......+++.+...+++.++.|..+|++++..+... .+.........+.+.|..
T Consensus 165 ~-----------------~~~---~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~--~~~~~~~~~~~~l~~l~~ 222 (852)
T 4fdd_A 165 S-----------------DVL---DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS--RTQALMLHIDSFIENLFA 222 (852)
T ss_dssp H-----------------CSS---SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT--TCHHHHTSHHHHHHHHHH
T ss_pred h-----------------hhh---cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHH
Confidence 0 000 011234566666777888899999999998765432 112121112234455555
Q ss_pred ccC-CchhHHHHHHHHHHHHHhhChhhhhhhcce-----eeeccCCcHhHHHHHHHHHHHhcccc--------cHHHHHH
Q 004132 249 LLS-AEPEIQYVALRNINLIVQRRPTILAHEIKV-----FFCKYNDPIYVKMEKLEIMIKLASDR--------NIDQVLL 314 (772)
Q Consensus 249 Lls-~~~~iryvaL~~l~~i~~~~p~~~~~~~~i-----f~~~~~d~~~Ik~~kL~lL~~L~n~~--------Nv~~Il~ 314 (772)
+++ .++++|..+++.+..++..+|+.+.+|+.. +.+..+++..+|..+++.+..++... .+..++.
T Consensus 223 ~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p 302 (852)
T 4fdd_A 223 LAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIP 302 (852)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 554 688999999999999999999988887642 23556777899999999999998643 3445666
Q ss_pred HHHHhh-----------hhc-----------cHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhccchhHHHHHHH
Q 004132 315 EFKEYA-----------TEV-----------DVDFVRKAVRAIGRCAIKLERA-AERCISVLLELIKIKVNYVVQEAIIV 371 (772)
Q Consensus 315 EL~~y~-----------~~~-----------d~~~~~~~v~aIg~la~k~~~~-~~~~vd~Ll~ll~~~~~~v~~e~i~~ 371 (772)
.|...+ .+. +-.+++.+..+++.++...+.. ....+..+.+++......++..++..
T Consensus 303 ~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~a 382 (852)
T 4fdd_A 303 VLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 382 (852)
T ss_dssp HHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 666555 220 1124777889999999876532 34566677777777777888888888
Q ss_pred HHHHHHhCcc----cHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccC------CHHHHHHHHhhhCCCCCHHHHHH
Q 004132 372 IKDIFRRYPN----TYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID------NADELLESFLESFPEEPAQVQLQ 441 (772)
Q Consensus 372 l~~i~~~~p~----~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~------~~~~~L~~l~~~f~~e~~~vq~~ 441 (772)
+..+....++ ....++..+...+.+ ..+.++.+++|.+|+|++... .-..++..+++.+.+.++.||..
T Consensus 383 lg~i~~~~~~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~ 461 (852)
T 4fdd_A 383 LGAIAEGCMQGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA 461 (852)
T ss_dssp HHHTTTTTHHHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 8887654432 345677888888876 578899999999999987542 24578888888888889999999
Q ss_pred HHHHHHHHhhcCCCC---ChHHHHHHHHHh
Q 004132 442 LLTATVKLFLKKPTE---GPQQMIQVVLNN 468 (772)
Q Consensus 442 lLta~~Kl~~~~p~~---~~~~~v~~vl~~ 468 (772)
+..|+..+.-..+.+ -...++..+++.
T Consensus 462 a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 462 ACSAFATLEEEACTELVPYLAYILDTLVFA 491 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHhhHhHHHHHHHHHHHH
Confidence 999999887543322 134455555553
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.62 E-value=7.6e-15 Score=171.55 Aligned_cols=423 Identities=15% Similarity=0.153 Sum_probs=245.4
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 004132 49 NTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (772)
Q Consensus 49 Ntl~kDl~~~np~iralALrtl~~I~--~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~ 126 (772)
+.+++.|+++|...|.-|++-+-.+. ..++ ..+...+.+++.++++.+||.+.+++..+.+.+||.+.. .++.+.
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l--~~n~l~ 92 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAAMTVGKDV-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIM--AVNSFV 92 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHT--THHHHG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHH--HHHHHH
Confidence 44555555555544444333322110 1111 122333445555666666666666665555555554332 345555
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHH--HHHHHHHh
Q 004132 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA--ENIVERVT 204 (772)
Q Consensus 127 ~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~--~~il~~v~ 204 (772)
+.|.|+|+.+++.|+.+|..|.. -++....+..+.+.+.+.++..+.....++.++...+++.. ..+++.+.
T Consensus 93 kdL~~~n~~ir~~AL~~L~~i~~------~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~ 166 (591)
T 2vgl_B 93 KDCEDPNPLIRALAVRTMGCIRV------DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLR 166 (591)
T ss_dssp GGSSSSSHHHHHHHHHHHHTCCS------GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHH
Confidence 55556666666655555554431 11222223334444455555555555444444322222211 24677888
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhhhcCChHH-HHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhChhhhhhhcc-e
Q 004132 205 PRLQHANCAVVLSAVKMILQQMELITSTDV-VRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIK-V 281 (772)
Q Consensus 205 ~~L~~~n~aVv~eaik~i~~~~~~i~~~~~-~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~~~~~~~~-i 281 (772)
..|++.++.|+..|+.++..+... +++. .-.+.......|+..+ ..++-.|-..|+.+..+....+......+. +
T Consensus 167 ~lL~d~d~~V~~~A~~aL~~i~~~--~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l 244 (591)
T 2vgl_B 167 DLIADSNPMVVANAVAALSEISES--HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERV 244 (591)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTS--CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHH
T ss_pred HHhCCCChhHHHHHHHHHHHHHhh--CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 888889999999999999886542 1110 0000001111223333 356667777777766555333322222222 2
Q ss_pred eeeccCCcHhHHHHHHHHHHHhcc-----cccHHHHHHHHHH---hhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004132 282 FFCKYNDPIYVKMEKLEIMIKLAS-----DRNIDQVLLEFKE---YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVL 353 (772)
Q Consensus 282 f~~~~~d~~~Ik~~kL~lL~~L~n-----~~Nv~~Il~EL~~---y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~L 353 (772)
..++.+.+..|+.++...+..+.+ ++-++.++..+.. ++.+.|.+++..++++|+.++.+.+.....++..+
T Consensus 245 ~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~ 324 (591)
T 2vgl_B 245 TPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVF 324 (591)
T ss_dssp TTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT
T ss_pred HHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhh
Confidence 345667778999999999999873 4456555444332 44557899999999999999987765544443332
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccC-CHHHHHHHHhhhCC
Q 004132 354 LELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-NADELLESFLESFP 432 (772)
Q Consensus 354 l~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~-~~~~~L~~l~~~f~ 432 (772)
+.+. ....+|..+++..+..+. .++..+.++..|.+++.+ .+++.+..++|.||..+...+ +...++..+++-+.
T Consensus 325 ~~~~-~d~~~Ir~~al~~L~~l~--~~~nv~~iv~~L~~~l~~-~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~ 400 (591)
T 2vgl_B 325 FVKY-NDPIYVKLEKLDIMIRLA--SQANIAQVLAELKEYATE-VDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ 400 (591)
T ss_dssp SCCT-TSCHHHHHHHHHHHHHTC--CSSTHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred eecc-CChHHHHHHHHHHHHHHC--ChhhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHc
Confidence 2111 223667778877666653 334456788888888876 367788889999999887653 24677777777777
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhc
Q 004132 433 EEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (772)
Q Consensus 433 ~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~ 490 (772)
+....|+..++.++..+..+.|+. ....+..+.+. ..+..++++|..+ .|-|=.
T Consensus 401 ~~~~~v~~e~i~~l~~ii~~~p~~-~~~~v~~L~~~-l~~~~~~~~~~~~--~wilGe 454 (591)
T 2vgl_B 401 TKVNYVVQEAIVVIRDIFRKYPNK-YESIIATLCEN-LDSLDEPDARAAM--IWIVGE 454 (591)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSCSS-CCTTHHHHHHT-TTTCCSHHHHHHH--HHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHH-HHhccCHHHHHHH--HHHHHc
Confidence 788888888888898988888863 33455666553 4455778885444 565544
No 11
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.60 E-value=4e-14 Score=166.25 Aligned_cols=405 Identities=13% Similarity=0.104 Sum_probs=292.5
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 004132 49 NTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (772)
Q Consensus 49 Ntl~kDl~~~np~iralALrtl~~I~--~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~ 126 (772)
+.+++.+++++...|.-|++-+-.+. ..++ ..+...+.+++.+++..+||-+.+++..+++.+||.... .++.+.
T Consensus 37 ~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~-~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l--~in~l~ 113 (618)
T 1w63_A 37 AAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA-HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL--MTNCIK 113 (618)
T ss_dssp HHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC-GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH--HHHHHH
Confidence 55677777777666666666554421 1122 335566778888999999999999999999888886443 568888
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHh
Q 004132 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR 206 (772)
Q Consensus 127 ~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~ 206 (772)
+-|.|+|+.+++.|+.+|..|... ++....+..+.+.+.+.+++.+-..+.++.+....+++..+.+++.+...
T Consensus 114 kDL~~~n~~vr~lAL~~L~~i~~~------~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~l 187 (618)
T 1w63_A 114 NDLNHSTQFVQGLALCTLGCMGSS------EMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNL 187 (618)
T ss_dssp HHHSCSSSHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTS
T ss_pred HhcCCCCHhHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 888999999999999999988631 23334456666777788999888877777766544555555667777888
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC----------------CchhHHHHHHHHHHHHHhh
Q 004132 207 LQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS----------------AEPEIQYVALRNINLIVQR 270 (772)
Q Consensus 207 L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls----------------~~~~iryvaL~~l~~i~~~ 270 (772)
+.+.|+.|+..|+.++..+.+. +++... ...++++.|+.+|. .+|-.|-.+++.+..+...
T Consensus 188 L~D~d~~V~~~Al~~L~~i~~~--~~~~~~-~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 188 LNEKNHGVLHTSVVLLTEMCER--SPDMLA-HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCS--HHHHHH-HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred hCCCCHhHHHHHHHHHHHHHHh--ChHHHH-HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 9999999999999999886431 333222 22345555554432 3688899999999999887
Q ss_pred Chhhhhhhccee-------eeccCCcHhHHHHHHHHHHHhcccccH-HHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh
Q 004132 271 RPTILAHEIKVF-------FCKYNDPIYVKMEKLEIMIKLASDRNI-DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL 342 (772)
Q Consensus 271 ~p~~~~~~~~if-------~~~~~d~~~Ik~~kL~lL~~L~n~~Nv-~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~ 342 (772)
.|+.-.....++ .+..+....|..++...+..+.+.... ...++-|..++.+.|.+++.-++.+|+.++.+.
T Consensus 265 ~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~ 344 (618)
T 1w63_A 265 DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD 344 (618)
T ss_dssp CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC
Confidence 775422211111 123344568999999999998764432 346777788888889999999999999999998
Q ss_pred hhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhcccc-CCHH
Q 004132 343 ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI-DNAD 421 (772)
Q Consensus 343 ~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i-~~~~ 421 (772)
+.....+.+.++.++...+.+|...++..+..+... +..+.++..+.+++.+ .+++.+..++..+|..+... ++..
T Consensus 345 p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~--~nv~~iv~eL~~~l~~-~d~e~r~~~v~~I~~la~k~~~~~~ 421 (618)
T 1w63_A 345 HNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG--NNIRGMMKELLYFLDS-CEPEFKADCASGIFLAAEKYAPSKR 421 (618)
T ss_dssp HHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS--SSTHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc--ccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhCccHH
Confidence 888888999999999999999999999988888543 3346678888888876 46778889999999988765 4566
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhh
Q 004132 422 ELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNA 469 (772)
Q Consensus 422 ~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~ 469 (772)
.++..+++-+...+..++..++.++..+..+.|+- -...+..+.+..
T Consensus 422 ~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l-~~~~v~~L~~~l 468 (618)
T 1w63_A 422 WHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM-HAYTVQRLYKAI 468 (618)
T ss_dssp HHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhH-HHHHHHHHHHHH
Confidence 66777765555455556666788888888888852 233566666543
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.59 E-value=1.7e-12 Score=164.26 Aligned_cols=445 Identities=11% Similarity=0.110 Sum_probs=291.7
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhccCC-----CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hhhhH
Q 004132 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQ-----PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKIT 79 (772)
Q Consensus 8 s~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~-----~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~---~~ei~ 79 (772)
++.+...+.-+.++|...|+++--.+.+..... ++..--++..+.+-+.|+|+.+|..|+++++.+. .++..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 566888888899999999999977777766443 2333356677888889999999999999988763 34566
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc------c--cccchHHHHHHhhcC-CChhHHHHHHHHHHHHHhh
Q 004132 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL------V--EDRGFLESLKDLISD-NNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 80 ~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~------~--~~~~~~~~L~~lL~D-~d~~Vv~~av~aL~eI~~~ 150 (772)
+.+.+.+.+.+.|+++.||.+|+.|+.++....+.. . ....+++.|...+.| .++.++..|+.+|.+++..
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 788888999999999999999999999998765542 0 012477888888884 8899999999999999876
Q ss_pred CCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHH-HHH-------------------------------
Q 004132 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE-AEN------------------------------- 198 (772)
Q Consensus 151 ~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e-~~~------------------------------- 198 (772)
.+..........+..++..+.+.+++.+...+++|..+.....+. ...
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~ 244 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ 244 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 544333334556777777787778888887777776654322111 011
Q ss_pred -----------HHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCC---------------
Q 004132 199 -----------IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA--------------- 252 (772)
Q Consensus 199 -----------il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~--------------- 252 (772)
+++.+...+++.++.|.-.++.++..+....+.. ++.....+.+.+...+..
T Consensus 245 ~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~ 322 (1230)
T 1u6g_C 245 AGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE--VYPHVSTIINICLKYLTYDPNYNYDDEDEDENA 322 (1230)
T ss_dssp SSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC--CHHHHHHHHHHHTTCCCCC--------------
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH--HHHhHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 2222222333444444444444433332211110 011112233333333321
Q ss_pred -----------------------chhHHHHHHHHHHHHHhhChhhhhhhcc-----eeeeccCCcHhHHHHHHHHHHHhc
Q 004132 253 -----------------------EPEIQYVALRNINLIVQRRPTILAHEIK-----VFFCKYNDPIYVKMEKLEIMIKLA 304 (772)
Q Consensus 253 -----------------------~~~iryvaL~~l~~i~~~~p~~~~~~~~-----if~~~~~d~~~Ik~~kL~lL~~L~ 304 (772)
..++|..++..+..++...|+.+.+++. ...+..+....||..+++.+..++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 323 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 402 (1230)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred ccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1357999999999999877765554432 122334555789999999887765
Q ss_pred cc-------------------------ccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHH
Q 004132 305 SD-------------------------RNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE----RAAERCISVLLE 355 (772)
Q Consensus 305 n~-------------------------~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~----~~~~~~vd~Ll~ 355 (772)
.. ..+..|+.-+.+.+.+.+...|..++..++.++...+ +..+.++..+++
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~ 482 (1230)
T 1u6g_C 403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF 482 (1230)
T ss_dssp HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH
T ss_pred HHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHH
Confidence 42 1223344444444777788888889999999987643 445677888888
Q ss_pred HHhhccc--hhHHHHHHHHHHHHHhC-ccc----HHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccCC---------
Q 004132 356 LIKIKVN--YVVQEAIIVIKDIFRRY-PNT----YESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDN--------- 419 (772)
Q Consensus 356 ll~~~~~--~v~~e~i~~l~~i~~~~-p~~----~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~--------- 419 (772)
+++.... .+..+++..+..++... |+. ...++..+.+.+++ ..+.++..+++.+|+....+..
T Consensus 483 ~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~ 561 (1230)
T 1u6g_C 483 SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD-PFYKITSEALLVTQQLVKVIRPLDQPSSFDA 561 (1230)
T ss_dssp HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHhcCcccccccch
Confidence 8887654 67778888888877643 332 23456666666655 3455556667777765533221
Q ss_pred ---HHHHHHHHhhhC--CCCCHHHHHHHHHHHHHHhhcCCC
Q 004132 420 ---ADELLESFLESF--PEEPAQVQLQLLTATVKLFLKKPT 455 (772)
Q Consensus 420 ---~~~~L~~l~~~f--~~e~~~vq~~lLta~~Kl~~~~p~ 455 (772)
.+.++..++..+ .+.++++|..++.++..+....++
T Consensus 562 ~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~ 602 (1230)
T 1u6g_C 562 TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD 602 (1230)
T ss_dssp HHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCc
Confidence 256777777777 677899999999999998876543
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.58 E-value=6.6e-13 Score=152.72 Aligned_cols=341 Identities=14% Similarity=0.182 Sum_probs=235.8
Q ss_pred ccchhHHHHHhhcCCCcchHHHHHHHHHHhccC--CCcHHHH----HHHHHHhhcCCC-CHHHHhHHHHHhcCCCh--hh
Q 004132 7 VSSLFTDVVNCMQTENLELKKLVYLYLINYAKS--QPDLAIL----AVNTFVKDSQDP-NPLIRALAVRTMGCIRV--DK 77 (772)
Q Consensus 7 vs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~--~~dl~lL----~iNtl~kDl~~~-np~iralALrtl~~I~~--~e 77 (772)
++...+.++..+.+++...++.+-..+..++.. ++....+ ++..|.+-+.++ |+.+|..|+++|+++.. ++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 445688899999999999998888888887654 3332211 467788888887 99999999999999875 33
Q ss_pred hHHH-----HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 004132 78 ITEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (772)
Q Consensus 78 i~~~-----l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~ 149 (772)
.... .++.+.++|.+.++.||..|+.++..+...+|+ .+...+.++.|..+|.+.++.|+.+|+.+|..++.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 3333 478899999999999999999999999865443 23334688999999999999999999999999987
Q ss_pred hC-CCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHH-----HHHHHHhHhhcCCCHHHHHHHHHHHH
Q 004132 150 NS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMIL 223 (772)
Q Consensus 150 ~~-~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~-----~il~~v~~~L~~~n~aVv~eaik~i~ 223 (772)
.. +...+......+..|+..+.+.++..+...+.+|..+....++... .+++.+...+++.+..|...|++++.
T Consensus 245 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 64 3222333345677788888888888898888898888755444333 34577888899999999999999998
Q ss_pred HhhhhcCChHHHHHHH-HhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHH
Q 004132 224 QQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMI 301 (772)
Q Consensus 224 ~~~~~i~~~~~~~~l~-~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~ 301 (772)
++.. .++...+.+. ..+.+.|+.++. .++.+|..|+.+|..|+...+.....
T Consensus 325 ~l~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~------------------------ 378 (530)
T 1wa5_B 325 NIVT--GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA------------------------ 378 (530)
T ss_dssp HHTT--SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH------------------------
T ss_pred HHHc--CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH------------------------
Confidence 8642 1333333222 245566667664 56778888888887776543321110
Q ss_pred HhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh---hH-----HHHHHHHHHHHhhccchhHHHHHHHHH
Q 004132 302 KLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLER---AA-----ERCISVLLELIKIKVNYVVQEAIIVIK 373 (772)
Q Consensus 302 ~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~---~~-----~~~vd~Ll~ll~~~~~~v~~e~i~~l~ 373 (772)
+.+. .++..|...+.+.+.++++.++.+|+.++....+ .. ..++..|++++......+...++..+.
T Consensus 379 -~~~~----~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~ 453 (530)
T 1wa5_B 379 -VIDA----NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 453 (530)
T ss_dssp -HHHT----TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred -HHHC----CCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 0111 2345555666677888889999999888875322 11 114555666666555555555555555
Q ss_pred HHHHh
Q 004132 374 DIFRR 378 (772)
Q Consensus 374 ~i~~~ 378 (772)
.++..
T Consensus 454 ~l~~~ 458 (530)
T 1wa5_B 454 NILKM 458 (530)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.57 E-value=1.2e-12 Score=146.27 Aligned_cols=329 Identities=16% Similarity=0.103 Sum_probs=231.5
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhcc--CCCcHHH-----HHHHHHHhhcCCC-CHHHHhHHHHHhcCCCh--hhhH-
Q 004132 11 FTDVVNCMQTENLELKKLVYLYLINYAK--SQPDLAI-----LAVNTFVKDSQDP-NPLIRALAVRTMGCIRV--DKIT- 79 (772)
Q Consensus 11 f~~vi~l~~s~~~~lKrl~YL~l~~~~~--~~~dl~l-----L~iNtl~kDl~~~-np~iralALrtl~~I~~--~ei~- 79 (772)
++.+++.+++++...|..+...+..++. .++.... -++..+.+-+++. ++.+|..|+++++++.. ++..
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 7788899999999999988888887653 3443222 2466777788887 99999999999998854 3322
Q ss_pred ----HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcC-CChhHHHHHHHHHHHHHhhC
Q 004132 80 ----EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISD-NNPMVVANAVAALAEIEENS 151 (772)
Q Consensus 80 ----~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~---~~~~~~~~~L~~lL~D-~d~~Vv~~av~aL~eI~~~~ 151 (772)
..+++.+.++|.++++.||..|+.++..+...+++. +-..+.++.|..+|.+ .++.|+.+|+.+|..++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 246788999999999999999999999998765542 2224678999999984 79999999999999999654
Q ss_pred -CCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHH-----HHHHHHhHhhcCCCHHHHHHHHHHHHHh
Q 004132 152 -SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQ 225 (772)
Q Consensus 152 -~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~-----~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (772)
+.....+..+.+..|++.+.+.++..+...+.+|..+.....+... .+++.+...+++.++.|...|++++.++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 3333344456778888888888888888888888887654433222 3567788889999999999999999886
Q ss_pred hhhcCChHHHHHHHH-hcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhh----hh-cc-eeeeccCCcHhHHHHHH
Q 004132 226 MELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA----HE-IK-VFFCKYNDPIYVKMEKL 297 (772)
Q Consensus 226 ~~~i~~~~~~~~l~~-~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~----~~-~~-if~~~~~d~~~Ik~~kL 297 (772)
.. .++...+.+.. .+.+.|+.+++ .++.+|..++..|..|+...+...+ .. +. .+.++.+++..+|..+.
T Consensus 262 ~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 339 (450)
T 2jdq_A 262 VT--GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339 (450)
T ss_dssp TT--SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred hh--CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 43 13333332222 45666777775 5789999999999998865443221 11 11 12233445566777777
Q ss_pred HHHHHhccc---ccHHH-----HHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 004132 298 EIMIKLASD---RNIDQ-----VLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (772)
Q Consensus 298 ~lL~~L~n~---~Nv~~-----Il~EL~~y~~~~d~~~~~~~v~aIg~la~k 341 (772)
..|..++.. ++++. ++..|.+.+.+.|.+++..++.+|+.++..
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 777777532 33332 445556666666677777777777666653
No 15
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.56 E-value=1.5e-11 Score=148.86 Aligned_cols=438 Identities=13% Similarity=0.121 Sum_probs=293.1
Q ss_pred hHHHHHhh-cCCCcchHHHHHHHHHHhccCC-CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--------------
Q 004132 11 FTDVVNCM-QTENLELKKLVYLYLINYAKSQ-PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------------- 74 (772)
Q Consensus 11 f~~vi~l~-~s~~~~lKrl~YL~l~~~~~~~-~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~-------------- 74 (772)
+.+++..+ .++|...|+-+--++..+.+.+ |+........+.+ .+.++.+|.+|...+.+..
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~ 83 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID--ENTKLEGRILAALTLKNELVSKDSVKTQQFAQR 83 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC--TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence 44556666 8889999999999998876643 5554444444432 2357899999999888862
Q ss_pred -----hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc-cc-cccccchHHHHHHhhcCC-ChhHHHHHHHHHHH
Q 004132 75 -----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AE-LVEDRGFLESLKDLISDN-NPMVVANAVAALAE 146 (772)
Q Consensus 75 -----~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~-p~-~~~~~~~~~~L~~lL~D~-d~~Vv~~av~aL~e 146 (772)
.++..+.+...+.+++.++++.||++++.++..+.+.+ |. ..+ ++++.|..++.+. |+.++..|+.++..
T Consensus 84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~--~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP--ELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH--HHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccH--HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 23445566777888899999999999999999998874 52 322 3778888888888 99999999999999
Q ss_pred HHhhCCCC---cccccHHHHHHHHHHhhcC--ChhHHHHHHHHHhccccC------CHHHHHHHHHHHhHhhcCCCHHHH
Q 004132 147 IEENSSRP---IFEITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAA------DAREAENIVERVTPRLQHANCAVV 215 (772)
Q Consensus 147 I~~~~~~~---~~~l~~~~~~~Ll~~L~~~--~ew~qv~iL~~L~~~~~~------~~~e~~~il~~v~~~L~~~n~aVv 215 (772)
|++.-... ........+..+...+.+. ++-.+...+++|..+... ...+...+++.+...+++.+..+.
T Consensus 162 l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r 241 (861)
T 2bpt_A 162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQ 241 (861)
T ss_dssp HHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHH
T ss_pred HHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHH
Confidence 98754322 1122334455555666665 555677778887654211 111224567777777888889999
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHH-hcccchhhcc-CCchhHHHHHHHHHHHHHhhC-----------------hhhhh
Q 004132 216 LSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRR-----------------PTILA 276 (772)
Q Consensus 216 ~eaik~i~~~~~~i~~~~~~~~l~~-~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~-----------------p~~~~ 276 (772)
..+++++..+..... +.+..... .+.+.+...+ +.++++|..+++.+..++... +..+.
T Consensus 242 ~~a~~~l~~l~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (861)
T 2bpt_A 242 AAAFGCLCKIMSKYY--TFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319 (861)
T ss_dssp HHHHHHHHHHHHHHG--GGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH
Confidence 999988877653321 11111222 3333333444 467899999999998887652 11222
Q ss_pred hhc----ce-eeecc-------CCcHhHHHHHHHHHHHhcc---cccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 004132 277 HEI----KV-FFCKY-------NDPIYVKMEKLEIMIKLAS---DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (772)
Q Consensus 277 ~~~----~i-f~~~~-------~d~~~Ik~~kL~lL~~L~n---~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k 341 (772)
+++ .. +.++. +|+..+|..+.+.|..++. +.-+..++.-+.+.+.+.+...|+.++.++|.++..
T Consensus 320 ~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 399 (861)
T 2bpt_A 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG 399 (861)
T ss_dssp HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcC
Confidence 211 11 11222 2336799999988887764 445667777777777788888899999999999864
Q ss_pred hh-h----hHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhC------cccHHHHHHHHHHhcccCChHHHHHHHHHHH
Q 004132 342 LE-R----AAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY------PNTYESIIATLCESLDTLDEPEAKASMIWII 410 (772)
Q Consensus 342 ~~-~----~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~------p~~~~~ii~~L~~~l~~~~~p~a~~~~iwil 410 (772)
.. . ..+..+..++..+......|+..+...+..+.... +.....++..+.+.+.+ .+..+..++|.+
T Consensus 400 ~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~--~~~v~~~a~~al 477 (861)
T 2bpt_A 400 PDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD--HPKVATNCSWTI 477 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS--CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc--ChHHHHHHHHHH
Confidence 32 2 22344555666666666677777766666665432 33467788888888866 378888899999
Q ss_pred hhhccccC---------CHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHHhhcCCCC
Q 004132 411 GEYAERID---------NADELLESFLESFPE--EPAQVQLQLLTATVKLFLKKPTE 456 (772)
Q Consensus 411 GEy~~~i~---------~~~~~L~~l~~~f~~--e~~~vq~~lLta~~Kl~~~~p~~ 456 (772)
+.+++... ..+.++..++..+.. .++.||..++.++..+....+.+
T Consensus 478 ~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~ 534 (861)
T 2bpt_A 478 INLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534 (861)
T ss_dssp HHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence 88766432 235677777766653 23689999999999988777653
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.56 E-value=2.8e-13 Score=151.46 Aligned_cols=330 Identities=15% Similarity=0.118 Sum_probs=220.2
Q ss_pred HHHHHHHhhcCCCCHHHHhHHHHHhcCC----Ch---hhhHH--HHHHHHHhhhCCC-ChHHHHHHHHHHHHHHhhcccc
Q 004132 46 LAVNTFVKDSQDPNPLIRALAVRTMGCI----RV---DKITE--YLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAEL 115 (772)
Q Consensus 46 L~iNtl~kDl~~~np~iralALrtl~~I----~~---~ei~~--~l~~~v~~~L~d~-~pyVRK~Aa~~l~kl~~~~p~~ 115 (772)
+++..+.+.++++++.+|..|++++..+ .. .++.+ .+++.+.++|.+. ++.||..|+.++.++...+++.
T Consensus 20 ~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp --CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 4567788888899999999999998876 22 22332 5788899999998 9999999999999998755543
Q ss_pred c---cccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccc-cHHHHHHHHHHhhc-CChhHHHHHHHHHhcccc
Q 004132 116 V---EDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNE-CTEWGQVFILDALSRYKA 190 (772)
Q Consensus 116 ~---~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~L~~-~~ew~qv~iL~~L~~~~~ 190 (772)
. ...+.++.|..+|.+.++.|+..|+.+|..+...++...-.+ ....+..|++.+.+ .++-.+...+.+|..+..
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 2 234789999999999999999999999999986542110001 11246667777764 566677777777776653
Q ss_pred CC-----HHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH-HhcccchhhccC-CchhHHHHHHHH
Q 004132 191 AD-----AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRN 263 (772)
Q Consensus 191 ~~-----~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~-~~~~~~L~~Lls-~~~~iryvaL~~ 263 (772)
.. ......+++.+...+++.+..|+..++.++.++... .++..+.+. ..+.+.|+.++. .++++|..+++.
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 257 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG--PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRA 257 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC--CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHH
Confidence 22 112245678888889999999999999999886431 233333322 246777888884 688999999999
Q ss_pred HHHHHhhChhhhh----hh-cc-eeeeccCCcHhHHHHHHHHHHHhcc--cccHH-----HHHHHHHHhhhhccHHHHHH
Q 004132 264 INLIVQRRPTILA----HE-IK-VFFCKYNDPIYVKMEKLEIMIKLAS--DRNID-----QVLLEFKEYATEVDVDFVRK 330 (772)
Q Consensus 264 l~~i~~~~p~~~~----~~-~~-if~~~~~d~~~Ik~~kL~lL~~L~n--~~Nv~-----~Il~EL~~y~~~~d~~~~~~ 330 (772)
|..++...+...+ .. +. ...++.+++..+|..++..|..++. +.+.+ .++..|.+.+.+.+.++++.
T Consensus 258 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~ 337 (450)
T 2jdq_A 258 VGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKE 337 (450)
T ss_dssp HHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 9999876553211 11 11 2234445567788888888888773 33333 34456666667777777777
Q ss_pred HHHHHHHHHHhh-hhhH-----HHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 004132 331 AVRAIGRCAIKL-ERAA-----ERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (772)
Q Consensus 331 ~v~aIg~la~k~-~~~~-----~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~ 377 (772)
++.+|+.++... +... ..++..|++++......+...++..+..++.
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 888887777542 1111 1245555666655555555555555555544
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.55 E-value=2.4e-12 Score=147.77 Aligned_cols=339 Identities=16% Similarity=0.170 Sum_probs=237.5
Q ss_pred chhHHHHHhhcCCCcchHHHHHHHHHHhccCCC--cHHHH----HHHHHHhhcCCCC-HHHHhHHHHHhcCCCh--hhhH
Q 004132 9 SLFTDVVNCMQTENLELKKLVYLYLINYAKSQP--DLAIL----AVNTFVKDSQDPN-PLIRALAVRTMGCIRV--DKIT 79 (772)
Q Consensus 9 ~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~--dl~lL----~iNtl~kDl~~~n-p~iralALrtl~~I~~--~ei~ 79 (772)
...+.+++.+.+++.+.+..+--++..++...+ ....+ ++..|.+-+.+++ +.+|..|+.+|++|.. ++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 347888999999999988888888877754432 22222 3567778888876 9999999999998865 4433
Q ss_pred HH-----HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhh-cCCChhHHHHHHHHHHHHHhh
Q 004132 80 EY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLI-SDNNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 80 ~~-----l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~L~~lL-~D~d~~Vv~~av~aL~eI~~~ 150 (772)
.. .++.+.++|.++++.||..|+.++..+...+|+ .+...+.++.|..+| .+.++.|+.+|+.+|..++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 32 578899999999999999999999999866554 233346788899999 688999999999999999976
Q ss_pred CCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHH-----HHHHHhHhhcCCCHHHHHHHHHHHHHh
Q 004132 151 SSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVKMILQQ 225 (772)
Q Consensus 151 ~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~-----il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (772)
.+...+....+.+..|+..|...++..+...+.+|..+...+...... +++.+...|++.++.|...|++++.++
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 544434444567788888888888889999999998887655543333 466788899999999999999999886
Q ss_pred hhhcCChHHHHHHH-HhcccchhhccC-C-chhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHH
Q 004132 226 MELITSTDVVRNLC-KKMAPPLVTLLS-A-EPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIK 302 (772)
Q Consensus 226 ~~~i~~~~~~~~l~-~~~~~~L~~Lls-~-~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~ 302 (772)
.. .++.....+. ..+.+.|+.++. . ++.+|..|+..|..|+...+.....
T Consensus 314 ~~--~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~------------------------- 366 (528)
T 4b8j_A 314 VT--GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQA------------------------- 366 (528)
T ss_dssp TT--SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHH-------------------------
T ss_pred Hc--CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHH-------------------------
Confidence 42 2333333322 234566667663 4 6778888888887776543321110
Q ss_pred hcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhh-hhhH-----HHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 004132 303 LASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKL-ERAA-----ERCISVLLELIKIKVNYVVQEAIIVIKDIF 376 (772)
Q Consensus 303 L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~-~~~~-----~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~ 376 (772)
+... .++..|.+.+.+.+.++++.++.+|+.++... +... ..++..|++++......+...++..+.+++
T Consensus 367 ~~~~----~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 367 VINA----GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHT----TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHC----CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0111 23445555566667888888888888887652 2111 124666777777666666666666666665
Q ss_pred Hh
Q 004132 377 RR 378 (772)
Q Consensus 377 ~~ 378 (772)
+.
T Consensus 443 ~~ 444 (528)
T 4b8j_A 443 KV 444 (528)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 18
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.52 E-value=7.7e-11 Score=142.68 Aligned_cols=479 Identities=13% Similarity=0.142 Sum_probs=298.7
Q ss_pred CccchhHHHHHhhcCC-CcchHHHHHHHHHHhccCC-C------cHHHHHHHHHHhhcCCC--CHHHHhHHHHHhcCC--
Q 004132 6 DVSSLFTDVVNCMQTE-NLELKKLVYLYLINYAKSQ-P------DLAILAVNTFVKDSQDP--NPLIRALAVRTMGCI-- 73 (772)
Q Consensus 6 Dvs~lf~~vi~l~~s~-~~~lKrl~YL~l~~~~~~~-~------dl~lL~iNtl~kDl~~~--np~iralALrtl~~I-- 73 (772)
....+++.++.++.++ +...|..+...+..+.+.- + ...--++..+.+-+.|+ ++.+|..|+++++.+
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3456788888899887 7777766655555554421 1 22334456666667776 899999999999874
Q ss_pred -Chhh-----hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--c-chHHHHHHhhcCCChhHHHHHHHHH
Q 004132 74 -RVDK-----ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--R-GFLESLKDLISDNNPMVVANAVAAL 144 (772)
Q Consensus 74 -~~~e-----i~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~-~~~~~L~~lL~D~d~~Vv~~av~aL 144 (772)
.... ..+++.+.+.+++.+.++.||+.|+.|+.++....|+.+.. . .+++.+...+.|.++.|+..|+..+
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l 290 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFW 290 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1111 13567888889999999999999999999999988876543 1 3556666778899999999999888
Q ss_pred HHHHhhCC----------------CCc-ccccHHHHHHHHHHhhcC------ChhH-HHHHHHHHhccccC-CHHHHHHH
Q 004132 145 AEIEENSS----------------RPI-FEITSHTLSKLLTALNEC------TEWG-QVFILDALSRYKAA-DAREAENI 199 (772)
Q Consensus 145 ~eI~~~~~----------------~~~-~~l~~~~~~~Ll~~L~~~------~ew~-qv~iL~~L~~~~~~-~~~e~~~i 199 (772)
..+..... ... -......+..++..+.+. ++|. +....++|..+... .......+
T Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l 370 (861)
T 2bpt_A 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPV 370 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHH
Confidence 88765420 001 112234455666666542 3463 23333444332211 01224466
Q ss_pred HHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhCh------
Q 004132 200 VERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP------ 272 (772)
Q Consensus 200 l~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p------ 272 (772)
++.+...+++.+..+...|+.++..+.... .++.+......+.+.|...+. .++.+|..++..+..++...+
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~-~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 777777888889999999999988765322 234444455566777777664 688999999999998886532
Q ss_pred hhhhhhcce-eeeccCCcHhHHHHHHHHHHHhccc----------ccHHHHHHHHHHhhhhcc--HHHHHHHHHHHHHHH
Q 004132 273 TILAHEIKV-FFCKYNDPIYVKMEKLEIMIKLASD----------RNIDQVLLEFKEYATEVD--VDFVRKAVRAIGRCA 339 (772)
Q Consensus 273 ~~~~~~~~i-f~~~~~d~~~Ik~~kL~lL~~L~n~----------~Nv~~Il~EL~~y~~~~d--~~~~~~~v~aIg~la 339 (772)
..+..-+.. +.++.++ ..+|..+...+..++.. .-+..|+..|...+.+.| ...+..++.+++.++
T Consensus 450 ~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 450 QHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMV 528 (861)
T ss_dssp TTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHH
Confidence 122222222 2234443 77888888888776642 345778888888776443 678888999999999
Q ss_pred HhhhhhHHHH----HHHHHHHHhhc---------------cchhHHHHHHHHHHHHHhCcc----cHHHHHHHHHHhccc
Q 004132 340 IKLERAAERC----ISVLLELIKIK---------------VNYVVQEAIIVIKDIFRRYPN----TYESIIATLCESLDT 396 (772)
Q Consensus 340 ~k~~~~~~~~----vd~Ll~ll~~~---------------~~~v~~e~i~~l~~i~~~~p~----~~~~ii~~L~~~l~~ 396 (772)
...+.....+ +..+++.+... ...+...++..+..+++..+. ....++..+.+.+++
T Consensus 529 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 608 (861)
T 2bpt_A 529 EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK 608 (861)
T ss_dssp HHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHS
T ss_pred HHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc
Confidence 8765443333 33444444421 122444566677777776543 234566666666654
Q ss_pred CChHHHHHHHHHHHhhhccccC-----CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHH----HHHHHHH
Q 004132 397 LDEPEAKASMIWIIGEYAERID-----NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQ----MIQVVLN 467 (772)
Q Consensus 397 ~~~p~a~~~~iwilGEy~~~i~-----~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~----~v~~vl~ 467 (772)
......+..+++.+|....... ..+.++..+.+.+.+.++.+|...+.++..+......+ ..+ ++..+++
T Consensus 609 ~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~l~~~l~~ 687 (861)
T 2bpt_A 609 KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED-FRRYSDAMMNVLAQ 687 (861)
T ss_dssp TTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG-GHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh-ccchHHHHHHHHHH
Confidence 3211455555555554332211 13456666666665667789988888877776655432 433 3343444
Q ss_pred hhhcCCCChHHHhhHHHHHH
Q 004132 468 NATVETDNPDLRDRAYIYWR 487 (772)
Q Consensus 468 ~~~~~s~~~dvrdRA~~y~~ 487 (772)
.....+.++++|..|...+.
T Consensus 688 ~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 688 MISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp HHHCTTCCTTHHHHHHHHHH
T ss_pred HhCCccccHhhhHHHHHHHH
Confidence 32222235889988876553
No 19
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.50 E-value=7.3e-11 Score=143.18 Aligned_cols=446 Identities=12% Similarity=0.141 Sum_probs=281.0
Q ss_pred CccchhHHHHHhhcCC--CcchHHHHHHHHHHhccCC-C----cHHHHHHHHHHhhcCCC--CHHHHhHHHHHhcCCCh-
Q 004132 6 DVSSLFTDVVNCMQTE--NLELKKLVYLYLINYAKSQ-P----DLAILAVNTFVKDSQDP--NPLIRALAVRTMGCIRV- 75 (772)
Q Consensus 6 Dvs~lf~~vi~l~~s~--~~~lKrl~YL~l~~~~~~~-~----dl~lL~iNtl~kDl~~~--np~iralALrtl~~I~~- 75 (772)
....+++.++.++.++ +...|+.+...+..+.+.- + +..-.++..+.+-+.++ ++.+|..|+++++.+..
T Consensus 125 ~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567888889999888 7777777776666665432 2 22333455566666666 79999999999987531
Q ss_pred --hhh-----HHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--c-chHHHHHHhhcCCChhHHHHHHHHHH
Q 004132 76 --DKI-----TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--R-GFLESLKDLISDNNPMVVANAVAALA 145 (772)
Q Consensus 76 --~ei-----~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~-~~~~~L~~lL~D~d~~Vv~~av~aL~ 145 (772)
+.+ ..++.+.+.+++.+.++.||+.|+.|+.++...+|+.+.. . .+++.+...+.|.++.|+..|+..+.
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~ 284 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 111 1356777888889999999999999999999988876542 1 46677777778999999999988887
Q ss_pred HHHhhC----------------C-CCccccc----HHHHHHHHHHhhc------CChhHH----HHHHHHHhccccCCHH
Q 004132 146 EIEENS----------------S-RPIFEIT----SHTLSKLLTALNE------CTEWGQ----VFILDALSRYKAADAR 194 (772)
Q Consensus 146 eI~~~~----------------~-~~~~~l~----~~~~~~Ll~~L~~------~~ew~q----v~iL~~L~~~~~~~~~ 194 (772)
.++... + ...+... ...+..+++.+.. .+.|.. ...|..+....+. .
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~ 362 (876)
T 1qgr_A 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--G
T ss_pred HHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--h
Confidence 776431 0 1112221 2334445555532 235732 2334444433331 2
Q ss_pred HHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhChh
Q 004132 195 EAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPT 273 (772)
Q Consensus 195 e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~ 273 (772)
....+++.+...+++.+..+...|+.++..+.... .++.+......+.+.++..++ .++.+|..++.++..++...+.
T Consensus 363 ~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~-~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 363 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP-EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 34567777777888899999999999998765432 223343444567777777775 6789999999999999987543
Q ss_pred h------hhhhcc-eeeeccCCcHhHHHHHHHHHHHhccc--------------------ccHHHHHHHHHHhhhhcc--
Q 004132 274 I------LAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASD--------------------RNIDQVLLEFKEYATEVD-- 324 (772)
Q Consensus 274 ~------~~~~~~-if~~~~~d~~~Ik~~kL~lL~~L~n~--------------------~Nv~~Il~EL~~y~~~~d-- 324 (772)
. +..-+. .+.++.+ +..+|..++..|..++.. .-+..|+..|...+.+.+
T Consensus 442 ~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 442 AAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGH 520 (876)
T ss_dssp GTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSC
T ss_pred hcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcc
Confidence 2 222122 2334433 467788887777776642 134566666666554331
Q ss_pred -HHHHHHHH--------------------------------------------------------HHHHHHHHhhh----
Q 004132 325 -VDFVRKAV--------------------------------------------------------RAIGRCAIKLE---- 343 (772)
Q Consensus 325 -~~~~~~~v--------------------------------------------------------~aIg~la~k~~---- 343 (772)
..++..++ ..++.++..+.
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~ 600 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 22333333 33443332222
Q ss_pred -hhHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHhCc----ccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccc
Q 004132 344 -RAAERCISVLLELIKIKV--NYVVQEAIIVIKDIFRRYP----NTYESIIATLCESLDTLDEPEAKASMIWIIGEYAER 416 (772)
Q Consensus 344 -~~~~~~vd~Ll~ll~~~~--~~v~~e~i~~l~~i~~~~p----~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~ 416 (772)
+.....+..++++++... .++..+++..+..++.... .....++..+...+.+..++.++..++|++|+.+..
T Consensus 601 ~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 680 (876)
T 1qgr_A 601 LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA 680 (876)
T ss_dssp HTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH
Confidence 223344555555565543 3677777777777765422 223556677777776645677888899999987654
Q ss_pred cCC-----HHHHHHHHhhhCCC--CCHHHHHHHHHHHHHHhhcCCC
Q 004132 417 IDN-----ADELLESFLESFPE--EPAQVQLQLLTATVKLFLKKPT 455 (772)
Q Consensus 417 i~~-----~~~~L~~l~~~f~~--e~~~vq~~lLta~~Kl~~~~p~ 455 (772)
... .++++..+++.+.. .+.++|..++.++..+....++
T Consensus 681 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~ 726 (876)
T 1qgr_A 681 LQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG 726 (876)
T ss_dssp HGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred HHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhch
Confidence 321 35777777777765 3567999999999888765543
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.48 E-value=5.8e-12 Score=144.82 Aligned_cols=333 Identities=13% Similarity=0.126 Sum_probs=224.3
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc--cc--cccccchHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhCCCCc
Q 004132 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN--AE--LVEDRGFLESLKDLISDN-NPMVVANAVAALAEIEENSSRPI 155 (772)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~--p~--~~~~~~~~~~L~~lL~D~-d~~Vv~~av~aL~eI~~~~~~~~ 155 (772)
..++.+.+.|.+.++.+|..|+.++.++.... |. .+...+.++.|..+|.+. ++.|...|+.+|..|+...+...
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 34666888889999999999999999997652 31 223357899999999987 89999999999999986432111
Q ss_pred cc-ccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHH-----HHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhc
Q 004132 156 FE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQMELI 229 (772)
Q Consensus 156 ~~-l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~-----~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i 229 (772)
-. .....+..|+..|.+.++..+...+.+|..+...+++... .+++.+...+++.+..|...|+.++.++...-
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 00 0123456677777788899999999999988765443222 35677788888888999999999998875321
Q ss_pred CChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhhh----h-cc-eeeeccCCcHhHHHHHHHHHHH
Q 004132 230 TSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAH----E-IK-VFFCKYNDPIYVKMEKLEIMIK 302 (772)
Q Consensus 230 ~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~~----~-~~-if~~~~~d~~~Ik~~kL~lL~~ 302 (772)
++.........+.+.|+.++. .+++++..++..|..++...+..... . +. .+.++.+.+..++..++.+|..
T Consensus 247 -~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 247 -KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp -SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred -CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 011111233467778888885 68899999999999998765543221 1 11 2334456667888999999988
Q ss_pred hcccc--cHH-----HHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhhccchhHHHHHH
Q 004132 303 LASDR--NID-----QVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA-----ERCISVLLELIKIKVNYVVQEAII 370 (772)
Q Consensus 303 L~n~~--Nv~-----~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~-----~~~vd~Ll~ll~~~~~~v~~e~i~ 370 (772)
++... ... .++..|..++.+.+..++..++.+|+.++...+... ...+..|++++......+..+++.
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 405 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW 405 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 87532 222 355667777777788888888888888875322211 124556777776666667777777
Q ss_pred HHHHHHHhC-c--ccHH-----HHHHHHHHhcccCChHHHHHHHHHHHhhhcc
Q 004132 371 VIKDIFRRY-P--NTYE-----SIIATLCESLDTLDEPEAKASMIWIIGEYAE 415 (772)
Q Consensus 371 ~l~~i~~~~-p--~~~~-----~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~ 415 (772)
.+.++.... + +... .++..|++.+++ .+++++..++|.++.+..
T Consensus 406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHH
Confidence 777776642 2 2222 235556665554 356666667777766543
No 21
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.47 E-value=2.3e-11 Score=147.60 Aligned_cols=471 Identities=12% Similarity=0.049 Sum_probs=283.6
Q ss_pred HHhhcCCCcchHHHHHHHHHHhccCCCcHH----H-HHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh------------
Q 004132 15 VNCMQTENLELKKLVYLYLINYAKSQPDLA----I-LAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK------------ 77 (772)
Q Consensus 15 i~l~~s~~~~lKrl~YL~l~~~~~~~~dl~----l-L~iNtl~kDl~~~np~iralALrtl~~I~~~e------------ 77 (772)
..++..++.+.|+.++-.+..++...++.. . -++..+.+.+.+.++.+|..|+.+++.+....
T Consensus 223 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 302 (876)
T 1qgr_A 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (876)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccc
Confidence 345667788888888888888777665431 1 34555666678889999999998876664321
Q ss_pred ---------------hHHHHHHHHHhhhC-------CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChh
Q 004132 78 ---------------ITEYLCDPLQRCLK-------DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPM 135 (772)
Q Consensus 78 ---------------i~~~l~~~v~~~L~-------d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~ 135 (772)
..+.+++.+.+.+. |.++.+|+.|+.|+..+....++.+- ..+++.+...+.|.++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~~l~~l~~~l~~~~~~ 381 (876)
T 1qgr_A 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-PHVLPFIKEHIKNPDWR 381 (876)
T ss_dssp HSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHTTCSSHH
T ss_pred cCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhH-HHHHHHHHHHccCCChH
Confidence 22456666666664 45789999999999999887765432 24778888899999999
Q ss_pred HHHHHHHHHHHHHhhCCCC-cccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccC------CHHHHHHHHHHHhHhhc
Q 004132 136 VVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAA------DAREAENIVERVTPRLQ 208 (772)
Q Consensus 136 Vv~~av~aL~eI~~~~~~~-~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~------~~~e~~~il~~v~~~L~ 208 (772)
++.+|+.++..|.....+. .-......+..++..+.+.++..+...+.+|.++... .......+++.+...++
T Consensus 382 ~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~ 461 (876)
T 1qgr_A 382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (876)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc
Confidence 9999999999987543211 1122344566777888888888888777777766532 12345677888888887
Q ss_pred CCCHHHHHHHHHHHHHhhhhcC------------ChHHHHHHHHhcccchhhccCC----chhHHHHHHHH---------
Q 004132 209 HANCAVVLSAVKMILQQMELIT------------STDVVRNLCKKMAPPLVTLLSA----EPEIQYVALRN--------- 263 (772)
Q Consensus 209 ~~n~aVv~eaik~i~~~~~~i~------------~~~~~~~l~~~~~~~L~~Lls~----~~~iryvaL~~--------- 263 (772)
+. +.|...|++++..+..... ..+.+......+.+.|..++.. +.++|..++++
T Consensus 462 ~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 462 AE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred CC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 74 7888888888776543221 0000001112233333333321 23444444444
Q ss_pred -----------------------------------------------HHHHHhhCh-hhhhhhcc-----eeeeccCCc-
Q 004132 264 -----------------------------------------------INLIVQRRP-TILAHEIK-----VFFCKYNDP- 289 (772)
Q Consensus 264 -----------------------------------------------l~~i~~~~p-~~~~~~~~-----if~~~~~d~- 289 (772)
+..++...+ .-+.++.. .+.++.+..
T Consensus 541 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 620 (876)
T 1qgr_A 541 KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG 620 (876)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC
Confidence 444443333 22222221 111222221
Q ss_pred -HhHHHHHHHHHHHhccc------ccHHHHHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHH
Q 004132 290 -IYVKMEKLEIMIKLASD------RNIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLE----RAAERCISVLLELI 357 (772)
Q Consensus 290 -~~Ik~~kL~lL~~L~n~------~Nv~~Il~EL~~y~~~~-d~~~~~~~v~aIg~la~k~~----~~~~~~vd~Ll~ll 357 (772)
.++|..++.++..++.. .-+..++..|...+.+. +.+++..++..+|.++.... +.....+..+++.+
T Consensus 621 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l 700 (876)
T 1qgr_A 621 SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENL 700 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 36888888888777642 23566777777777776 77888888888888886543 33455666666777
Q ss_pred hhc--cchhHHHHHHHHHHHHHhCccc----HHHHHHHHHHhcccCC---hH-------HHHHHHHH-------HHhhh-
Q 004132 358 KIK--VNYVVQEAIIVIKDIFRRYPNT----YESIIATLCESLDTLD---EP-------EAKASMIW-------IIGEY- 413 (772)
Q Consensus 358 ~~~--~~~v~~e~i~~l~~i~~~~p~~----~~~ii~~L~~~l~~~~---~p-------~a~~~~iw-------ilGEy- 413 (772)
... ...+...++..+.++....+.. ...+++.+.+.+..-. ++ ..+..+.- .+|+.
T Consensus 701 ~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~ 780 (876)
T 1qgr_A 701 GNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQ 780 (876)
T ss_dssp TCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 652 3457777778888877654332 2345555555443211 11 33333332 23331
Q ss_pred -------ccccCCHHHHHHHHhhhCCCC--CHHHHHHHHHHHHHHhhcCCC-CCh-----HHHHHHHHHhhhcCCCChHH
Q 004132 414 -------AERIDNADELLESFLESFPEE--PAQVQLQLLTATVKLFLKKPT-EGP-----QQMIQVVLNNATVETDNPDL 478 (772)
Q Consensus 414 -------~~~i~~~~~~L~~l~~~f~~e--~~~vq~~lLta~~Kl~~~~p~-~~~-----~~~v~~vl~~~~~~s~~~dv 478 (772)
....+..+.++..+.....+. +..||...+.++.++....+. + . ...+..+++.+. ++.++++
T Consensus 781 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~~i~~ll~~~l-~~~~~~~ 858 (876)
T 1qgr_A 781 ENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDV-LKLVEARPMIHELLTEGR-RSKTNKA 858 (876)
T ss_dssp SSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHH-HHHHHTSHHHHHHHHHHH-HCSCHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHH-HHHHHhcHHHHHHHHHHh-hcCCHhH
Confidence 011112344443332222444 688999999999999876654 2 2 234566666444 3578999
Q ss_pred HhhHHHHHHHh
Q 004132 479 RDRAYIYWRLL 489 (772)
Q Consensus 479 rdRA~~y~~Ll 489 (772)
|+-|..-...+
T Consensus 859 r~~a~~a~~~~ 869 (876)
T 1qgr_A 859 KTLARWATKEL 869 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99887665443
No 22
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.47 E-value=4.7e-12 Score=152.59 Aligned_cols=440 Identities=12% Similarity=0.117 Sum_probs=284.0
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHH
Q 004132 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLES 124 (772)
Q Consensus 48 iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~ 124 (772)
+..+.++|.++++.+|..|++.++.+...++..-.++.+.++|.+.++.||..|+.++.++....+. .+...+.++.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 5788999999999999999999987766677788899999999999999999999999999864321 1222357888
Q ss_pred HHHhhc-CCChhHHHHHHHHHHHHHhhCCCCcccc-cHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHH--H-H--H
Q 004132 125 LKDLIS-DNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAR--E-A--E 197 (772)
Q Consensus 125 L~~lL~-D~d~~Vv~~av~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~--e-~--~ 197 (772)
|..+|. +.|+.+..+|+.+|..+..... ....+ ....+..|+..|...++-.|...+.+|..+...+.. . . .
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~-~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~ 275 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHRE-GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLA 275 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCch-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHc
Confidence 888886 4599999999999998765321 11001 123577788888888888888888888877643221 1 1 2
Q ss_pred HHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH-HhcccchhhccC-C-chhHHHHHHHHHHHHHhhC---
Q 004132 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-A-EPEIQYVALRNINLIVQRR--- 271 (772)
Q Consensus 198 ~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~-~~~~~~L~~Lls-~-~~~iryvaL~~l~~i~~~~--- 271 (772)
.+++.+...+++.+..|...++.++..+. ..+++....+. ...++.|+.++. . ....+..+...+..+....
T Consensus 276 g~v~~Lv~lL~~~~~~v~~~a~~aL~~La--~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~ 353 (780)
T 2z6g_A 276 GGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 353 (780)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHH--TTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHh--cCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHH
Confidence 45677888898888777766666665442 12343333322 134556777774 3 3456677777777776422
Q ss_pred hhhhhhh-cc-eeeeccCCcHhHHHHHHHHHHHhcccc----cHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhh
Q 004132 272 PTILAHE-IK-VFFCKYNDPIYVKMEKLEIMIKLASDR----NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERA 345 (772)
Q Consensus 272 p~~~~~~-~~-if~~~~~d~~~Ik~~kL~lL~~L~n~~----Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~ 345 (772)
+.++... +. .+.++.+.+..+++.++..|..|+... ....++..|.+.+...|.+.++.++.+|+.++...+..
T Consensus 354 ~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~ 433 (780)
T 2z6g_A 354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433 (780)
T ss_dssp HHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 1222221 11 223445566789999999999997543 45778888889898899999999999999987643222
Q ss_pred H-----HHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhCccc---H-----HHHHHHHHHhcccCChHHHHHHHHHHH
Q 004132 346 A-----ERCISVLLELIKIKVN--YVVQEAIIVIKDIFRRYPNT---Y-----ESIIATLCESLDTLDEPEAKASMIWII 410 (772)
Q Consensus 346 ~-----~~~vd~Ll~ll~~~~~--~v~~e~i~~l~~i~~~~p~~---~-----~~ii~~L~~~l~~~~~p~a~~~~iwil 410 (772)
. ...+..|++++...++ .+...++..+.+|....++. + ..++..|.+.|..-..+..+..++|++
T Consensus 434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL 513 (780)
T 2z6g_A 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 513 (780)
T ss_dssp HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Confidence 1 2357888999887543 68888888888886555542 1 124677778777655568889999999
Q ss_pred hhhccccC--------CH-HHHHHHHhhh----------------CCC--CCHHHHHHHHHHHHHHhhcCCCCChHH---
Q 004132 411 GEYAERID--------NA-DELLESFLES----------------FPE--EPAQVQLQLLTATVKLFLKKPTEGPQQ--- 460 (772)
Q Consensus 411 GEy~~~i~--------~~-~~~L~~l~~~----------------f~~--e~~~vq~~lLta~~Kl~~~~p~~~~~~--- 460 (772)
|..+..-. +. +.+++.+-.. +.+ .+.+++..++.++.++.. .+. .+.
T Consensus 514 ~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~-~~~--~~~~l~ 590 (780)
T 2z6g_A 514 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR-DIH--NRIVIR 590 (780)
T ss_dssp HHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT-SHH--HHHHHH
T ss_pred HHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc-Chh--hHHHHH
Confidence 98763211 11 1222222110 111 135678888888888863 121 111
Q ss_pred ---HHHHHHHhhhcCCCChHHHhhHHHHHHHhcCCHHH
Q 004132 461 ---MIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEA 495 (772)
Q Consensus 461 ---~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~~~~~ 495 (772)
.+..+++.. .+.++++|..|.....-|..+++.
T Consensus 591 ~~~~i~~Lv~lL--~~~~~~v~~~a~~aL~~L~~~~~~ 626 (780)
T 2z6g_A 591 GLNTIPLFVQLL--YSPIENIQRVAAGVLCELAQDKEA 626 (780)
T ss_dssp HTCCHHHHHHGG--GCSCHHHHHHHHHHHHHHHTSHHH
T ss_pred HCCcHHHHHHHH--cCCCHHHHHHHHHHHHHHhcCHHH
Confidence 234455543 247899999987665545445443
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.46 E-value=2.2e-11 Score=146.72 Aligned_cols=468 Identities=13% Similarity=0.112 Sum_probs=286.4
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----h--HHHHH
Q 004132 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----I--TEYLC 83 (772)
Q Consensus 11 f~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~e-----i--~~~l~ 83 (772)
.+.+++.+++++.+.|+.. +.+..+. ...+++.=++..|.+-|.+.++.+|..|+.+|++|...+ + .+..+
T Consensus 117 i~~lv~~L~~~~~~~r~~a-~~~l~~~-~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAV-VNLINYQ-DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194 (780)
T ss_dssp ---------CCSCHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCccHHHHHHH-HHHHHhh-hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence 4667777888877655532 2222222 123455556788888888999999999999999986421 1 13466
Q ss_pred HHHHhhhCC-CChHHHHHHHHHHHHHHhhc--cccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccc-c
Q 004132 84 DPLQRCLKD-DDPYVRKTAAICVAKLYDIN--AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-T 159 (772)
Q Consensus 84 ~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~~--p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l-~ 159 (772)
+.+.+.|.+ .++.+|+.|+.++.++.... .+.+...+.++.|..+|.+.++.|+..|+.+|..|+.......-.+ .
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~ 274 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL 274 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 777777764 59999999999999976431 1123335788999999999999999999999999987643221111 1
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHH-----HHHHHHhHhhcCCCHHHHH-HHHHHHHHhhhhcCChH
Q 004132 160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVL-SAVKMILQQMELITSTD 233 (772)
Q Consensus 160 ~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~-----~il~~v~~~L~~~n~aVv~-eaik~i~~~~~~i~~~~ 233 (772)
...+..|+..|.+.++-.+...+.+|..+...+++... ..++.+...+++.++..+. .+++++..+.. ++.
T Consensus 275 ~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~---~~~ 351 (780)
T 2z6g_A 275 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSS 351 (780)
T ss_dssp TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT---STT
T ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc---ChH
Confidence 24567788888776654555556666655433333222 2355666677766654443 45555554431 222
Q ss_pred HHHHH-HHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhh--hhhhcc-eeeeccCCcHhHHHHHHHHHHHhcccc-
Q 004132 234 VVRNL-CKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI--LAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDR- 307 (772)
Q Consensus 234 ~~~~l-~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~--~~~~~~-if~~~~~d~~~Ik~~kL~lL~~L~n~~- 307 (772)
....+ ...+++.|+.++. .++.++.-++..+..++...+.. ...-+. .+..+.+++..+|..+..+|..|+...
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 22222 2235677788775 57789999999999998655321 111111 123345677889999999999998743
Q ss_pred -cHHH-----HHHHHHHhhhhc-c-HHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHhhccc-hhHHHHHH
Q 004132 308 -NIDQ-----VLLEFKEYATEV-D-VDFVRKAVRAIGRCAIKLERA--------AERCISVLLELIKIKVN-YVVQEAII 370 (772)
Q Consensus 308 -Nv~~-----Il~EL~~y~~~~-d-~~~~~~~v~aIg~la~k~~~~--------~~~~vd~Ll~ll~~~~~-~v~~e~i~ 370 (772)
+... .+..|.+.+.+. + .+++..++++|+.++...+.. ....+..|++++..... .+..+++.
T Consensus 432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~ 511 (780)
T 2z6g_A 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Confidence 3332 456666666553 3 488999999999987543221 12347888999987765 78889988
Q ss_pred HHHHHHHhCcccH-----HHHHHHHHHhcccCChHHHHHHHHH----------------------HHhhhccccCCH---
Q 004132 371 VIKDIFRRYPNTY-----ESIIATLCESLDTLDEPEAKASMIW----------------------IIGEYAERIDNA--- 420 (772)
Q Consensus 371 ~l~~i~~~~p~~~-----~~ii~~L~~~l~~~~~p~a~~~~iw----------------------ilGEy~~~i~~~--- 420 (772)
.+.++... ++.+ ..++..|++.+.+ .+++.+..++| +++..+....+.
T Consensus 512 aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l 589 (780)
T 2z6g_A 512 LIRNLALC-PANHAPLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI 589 (780)
T ss_dssp HHHHHHSS-HHHHHHHHHTTHHHHHHHHHHH-HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHhcC-HHHHHHHHHCCCHHHHHHHHHh-cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHH
Confidence 99888753 3222 2345666666643 22233333344 444332110000
Q ss_pred --HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHH------HHHHHHhhhcCCCChHHHhhHHHHHHHhc
Q 004132 421 --DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (772)
Q Consensus 421 --~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~------v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~ 490 (772)
...+..|++-+.+.++.||.....++..+... +. .... +..+.+. . ++.|++||..|..-..-+.
T Consensus 590 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~--~~~~i~~~g~i~~L~~L-l-~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 590 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KE--AAEAIEAEGATAPLTEL-L-HSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp HHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-HH--HHHHHHHTTCHHHHHHG-G-GCSCHHHHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-HH--HHHHHHHCCCHHHHHHH-H-cCCCHHHHHHHHHHHHHHH
Confidence 11244556666678899999999999888632 21 2222 3334443 2 4589999999877655444
No 24
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.43 E-value=1.1e-11 Score=138.77 Aligned_cols=355 Identities=14% Similarity=0.146 Sum_probs=207.6
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCCh---hhhHHHHHHHHHhhhCC--CChHHHHHHHHHHHHHHhhc-----------
Q 004132 49 NTFVKDSQDPNPLIRALAVRTMGCIRV---DKITEYLCDPLQRCLKD--DDPYVRKTAAICVAKLYDIN----------- 112 (772)
Q Consensus 49 Ntl~kDl~~~np~iralALrtl~~I~~---~ei~~~l~~~v~~~L~d--~~pyVRK~Aa~~l~kl~~~~----------- 112 (772)
..+...+.++|+.+|..|-..|..+.. ++....+ ...+.+ .++.||..|+..+-++.+.+
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L----~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVEL----SRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHH----HHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 345556778899999999888887654 4444443 334434 47899999999988886432
Q ss_pred ----cccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCC-CcccccHHHHHHHHHHhhcC--ChhHHHHHHHHH
Q 004132 113 ----AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSHTLSKLLTALNEC--TEWGQVFILDAL 185 (772)
Q Consensus 113 ----p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~-~~~~l~~~~~~~Ll~~L~~~--~ew~qv~iL~~L 185 (772)
++... ..+.+.|..+|.+.++.| ..+..++.+|.....+ ..| +..+..|+..+.+. ++-.+...+.+|
T Consensus 80 ~~~l~~~~~-~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w---~~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 80 WLAIDANAR-REVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW---PELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp HHTSCHHHH-HHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC---TTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred hhcCCHHHH-HHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc---HHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 11111 124455667778888888 8788888888766422 123 23466667777666 554555566666
Q ss_pred hccccC-----CHHHHHHHHHHHhHhhcCC--CHHHHHHHHHHHHHhhhhcCC---hHHHHHHHHhcccchhhcc-CCch
Q 004132 186 SRYKAA-----DAREAENIVERVTPRLQHA--NCAVVLSAVKMILQQMELITS---TDVVRNLCKKMAPPLVTLL-SAEP 254 (772)
Q Consensus 186 ~~~~~~-----~~~e~~~il~~v~~~L~~~--n~aVv~eaik~i~~~~~~i~~---~~~~~~l~~~~~~~L~~Ll-s~~~ 254 (772)
..+... -......+++.+...+++. ++.|..+|++++..+.+.+.+ ......+ +.+.+..++ +.++
T Consensus 155 ~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~---l~~~l~~~~~~~~~ 231 (462)
T 1ibr_B 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHF---IMQVVCEATQCPDT 231 (462)
T ss_dssp HHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHH---HHHHHHHHTTCSSH
T ss_pred HHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHHHHhcCCCCH
Confidence 544321 1223456778888888887 789999999999886543321 1111111 233334444 4688
Q ss_pred hHHHHHHHHHHHHHhhChhhhhhhcc-e-----eeeccCCcHhHHHHHHHHHHHhcccc---------------------
Q 004132 255 EIQYVALRNINLIVQRRPTILAHEIK-V-----FFCKYNDPIYVKMEKLEIMIKLASDR--------------------- 307 (772)
Q Consensus 255 ~iryvaL~~l~~i~~~~p~~~~~~~~-i-----f~~~~~d~~~Ik~~kL~lL~~L~n~~--------------------- 307 (772)
++|-.+++.+..++..+++.+.+|+. . +.+..+++..+|..+++.+..++...
T Consensus 232 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (462)
T 1ibr_B 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (462)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh
Confidence 99999999999999999887776654 2 12345666789999999988887642
Q ss_pred ------cHHHHHHHHHHhhhhc-------cHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 004132 308 ------NIDQVLLEFKEYATEV-------DVDFVRKAVRAIGRCAIKLER-AAERCISVLLELIKIKVNYVVQEAIIVIK 373 (772)
Q Consensus 308 ------Nv~~Il~EL~~y~~~~-------d~~~~~~~v~aIg~la~k~~~-~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~ 373 (772)
.+..++..|.+.+.+. +...|+.+..+++.++..++. .....+..+.+.+....-.++..++..+.
T Consensus 312 ~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~ 391 (462)
T 1ibr_B 312 KFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFG 391 (462)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 1234444444444322 123455556666666655442 11122222333333333344455555555
Q ss_pred HHHHhCc-c----cHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccc
Q 004132 374 DIFRRYP-N----TYESIIATLCESLDTLDEPEAKASMIWIIGEYAER 416 (772)
Q Consensus 374 ~i~~~~p-~----~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~ 416 (772)
.+..... + ....+++.+...+.+ .++.+|..++|.+|.|++.
T Consensus 392 ~l~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 392 CILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HTSSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHh
Confidence 5543221 1 113345555555544 3455556666666665543
No 25
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.41 E-value=2.3e-12 Score=135.32 Aligned_cols=251 Identities=16% Similarity=0.101 Sum_probs=157.3
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~ 126 (772)
+++.+.+.|.|+|+.+|..|+++|+.++.++.. +.+.+++.|+++.||..|+.+++++.. .++.+. .+++.|.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~----~~L~~~l~d~~~~vR~~A~~aL~~l~~-~~~~~~--~l~~~L~ 96 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDAV----RLAIEFCSDKNYIRRDIGAFILGQIKI-CKKCED--NVFNILN 96 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHH----HHHHHHHTCSSHHHHHHHHHHHHHSCC-CTTTHH--HHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCchHH----HHHHHHHcCCCHHHHHHHHHHHHHhcc-ccccch--HHHHHHH
Confidence 467889999999999999999999999976554 457889999999999999999998753 222222 2455565
Q ss_pred -HhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhH
Q 004132 127 -DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTP 205 (772)
Q Consensus 127 -~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~ 205 (772)
.+++|.++.|..+|+.+|..++...+. ... .+++.+..
T Consensus 97 ~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~-------------------------------------~~~~~L~~ 135 (280)
T 1oyz_A 97 NMALNDKSACVRATAIESTAQRCKKNPI----YSP-------------------------------------KIVEQSQI 135 (280)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHH-------------------------------------HHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCc----ccH-------------------------------------HHHHHHHH
Confidence 357899999999999999988754310 011 22333344
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhChhhhhhhcceeee
Q 004132 206 RLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILAHEIKVFFC 284 (772)
Q Consensus 206 ~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~ 284 (772)
.+++.++.|...|+.++..+ .++. ..+.|..++ +.++.+|+.++..|..+....+..+..- +.+
T Consensus 136 ~l~d~~~~vR~~a~~aL~~~----~~~~--------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L---~~~ 200 (280)
T 1oyz_A 136 TAFDKSTNVRRATAFAISVI----NDKA--------TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCF---VEM 200 (280)
T ss_dssp HTTCSCHHHHHHHHHHHHTC-------C--------CHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHH---HHH
T ss_pred HhhCCCHHHHHHHHHHHHhc----CCHH--------HHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHH---HHH
Confidence 45555556666666555532 1221 223334444 3456666666666666543333332221 123
Q ss_pred ccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc-cch
Q 004132 285 KYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK-VNY 363 (772)
Q Consensus 285 ~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~-~~~ 363 (772)
+.+++..+|..++..|..+.++..+..++..| .+ .++++.++.++|.++.. .++..|.+++... .+.
T Consensus 201 l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l----~d--~~vr~~a~~aL~~i~~~------~~~~~L~~~l~~~~~~~ 268 (280)
T 1oyz_A 201 LQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL----KK--NTVYDDIIEAAGELGDK------TLLPVLDTMLYKFDDNE 268 (280)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHH----TS--SSCCHHHHHHHHHHCCG------GGHHHHHHHHTTSSCCH
T ss_pred hcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHh----cC--ccHHHHHHHHHHhcCch------hhhHHHHHHHhcCCCcH
Confidence 34566778888888888888776665555443 33 23677777888777642 3566666666543 334
Q ss_pred hHHHHHHHH
Q 004132 364 VVQEAIIVI 372 (772)
Q Consensus 364 v~~e~i~~l 372 (772)
++.+++.++
T Consensus 269 ~~~~~~~~l 277 (280)
T 1oyz_A 269 IITSAIDKL 277 (280)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444444
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.41 E-value=8.5e-11 Score=134.89 Aligned_cols=329 Identities=13% Similarity=0.109 Sum_probs=218.6
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhcc----ccccccchHHHHHHhhcCCC-hhHHHHHHHHHHHHHhhCCCCccc
Q 004132 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINA----ELVEDRGFLESLKDLISDNN-PMVVANAVAALAEIEENSSRPIFE 157 (772)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p----~~~~~~~~~~~L~~lL~D~d-~~Vv~~av~aL~eI~~~~~~~~~~ 157 (772)
++.+.+.|.+.++.+|..|+.++.++....+ +.+...+.++.|..+|.+.+ +.+...|+.+|..|+..++...-.
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678888899999999999999999976554 12233578899999999877 999999999999998643211111
Q ss_pred -ccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHH-----HHHHHhHhh-cCCCHHHHHHHHHHHHHhhhhcC
Q 004132 158 -ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRL-QHANCAVVLSAVKMILQQMELIT 230 (772)
Q Consensus 158 -l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~-----il~~v~~~L-~~~n~aVv~eaik~i~~~~~~i~ 230 (772)
+....+..|+..|.+.++-.+...+.+|..+...++..... +++.+...+ .+.+..+...|+.++.++...-.
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 11246777888888888888888888888876544432222 455677777 67788999999999988754321
Q ss_pred ChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhhh----h-c-ceeeeccCCcHhHHHHHHHHHHHh
Q 004132 231 STDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAH----E-I-KVFFCKYNDPIYVKMEKLEIMIKL 303 (772)
Q Consensus 231 ~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~~----~-~-~if~~~~~d~~~Ik~~kL~lL~~L 303 (772)
... ......+++.|+.++. .+++++..++..|..++...+..... . + ..+.++.+.+..++..++.+|..|
T Consensus 236 ~~~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 236 QPS--FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp CCC--HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCc--HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 111 1223456677788774 68999999999999988655432211 1 1 123445566678888888888888
Q ss_pred cccc--cHHH-----HHHHHHHhhhhc-cHHHHHHHHHHHHHHHHhhhhhHH-----HHHHHHHHHHhhccchhHHHHHH
Q 004132 304 ASDR--NIDQ-----VLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLERAAE-----RCISVLLELIKIKVNYVVQEAII 370 (772)
Q Consensus 304 ~n~~--Nv~~-----Il~EL~~y~~~~-d~~~~~~~v~aIg~la~k~~~~~~-----~~vd~Ll~ll~~~~~~v~~e~i~ 370 (772)
+... .... ++..|...+.+. +..++++++.+|+.++...+.... ..+..|++++......+..+++.
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 393 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW 393 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 7532 2222 356666777776 788888888888888753222111 23556667776666666677777
Q ss_pred HHHHHHHh-CcccHHH-----HHHHHHHhcccCChHHHHHHHHHHHhhhc
Q 004132 371 VIKDIFRR-YPNTYES-----IIATLCESLDTLDEPEAKASMIWIIGEYA 414 (772)
Q Consensus 371 ~l~~i~~~-~p~~~~~-----ii~~L~~~l~~~~~p~a~~~~iwilGEy~ 414 (772)
.+.++... .|+...+ ++..|++.+.+ .+++++..++|.++...
T Consensus 394 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 394 AISNATSGGSHDQIKYLVSEGCIKPLCDLLIC-PDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence 77776665 3433322 34555555554 44556666666665543
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.41 E-value=7.3e-11 Score=139.12 Aligned_cols=438 Identities=12% Similarity=0.089 Sum_probs=279.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----hH--HHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhccc
Q 004132 43 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----IT--EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAE 114 (772)
Q Consensus 43 l~lL~iNtl~kDl~~~np~iralALrtl~~I~~~e-----i~--~~l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~~p~ 114 (772)
+..-++..|.+-|++.++.+|..|+++|+++...+ +. +..++.+.+.|.+ .++.+|+.|+.++..+... ++
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~ 89 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-RE 89 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hh
Confidence 33345677777788899999999999998875322 11 2456778888876 4899999999999876542 22
Q ss_pred ---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccc-cHHHHHHHHHHhhcCChhHHHHHHHHHhcccc
Q 004132 115 ---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKA 190 (772)
Q Consensus 115 ---~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~ 190 (772)
.+.+.+.++.|..+|.+.++.|+..|+.+|..++.........+ ....+..|++.|...++-.+...+++|..+..
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 22234788999999999999999999999999987653221111 13457788888877776566666677776654
Q ss_pred CCHHHHH-----HHHHHHhHhhcCCC-HHHHHHHHHHHHHhhhhcCChHHHHHHHH-hcccchhhccC-CchhHHHHHHH
Q 004132 191 ADAREAE-----NIVERVTPRLQHAN-CAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALR 262 (772)
Q Consensus 191 ~~~~e~~-----~il~~v~~~L~~~n-~aVv~eaik~i~~~~~~i~~~~~~~~l~~-~~~~~L~~Lls-~~~~iryvaL~ 262 (772)
.+++... ..++.+...+++.+ ..++..+++++.++.. +++....+.. .++++|+.++. .++.++..++.
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~---~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~ 246 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT---CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHH
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc---CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 4443322 23556667777654 4566777888776532 3333233222 35667777774 67899999999
Q ss_pred HHHHHHhhChhh--hhhhcc-eeeeccCCcHhHHHHHHHHHHHhccc--ccHHH-----HHHHHHHhhhhcc--HHHHHH
Q 004132 263 NINLIVQRRPTI--LAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASD--RNIDQ-----VLLEFKEYATEVD--VDFVRK 330 (772)
Q Consensus 263 ~l~~i~~~~p~~--~~~~~~-if~~~~~d~~~Ik~~kL~lL~~L~n~--~Nv~~-----Il~EL~~y~~~~d--~~~~~~ 330 (772)
.|..++...+.. ...-+. .+..+.+++..+|..+..+|..|+.. .|.+. .+..|.+++.+.+ .+++..
T Consensus 247 ~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~ 326 (644)
T 2z6h_A 247 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 326 (644)
T ss_dssp HHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHH
Confidence 999998654431 111111 22344567788999999999999874 34443 4566777776543 689999
Q ss_pred HHHHHHHHHHhhhhh--------HHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhCcccHH-----HHHHHHHHhccc
Q 004132 331 AVRAIGRCAIKLERA--------AERCISVLLELIKIKV-NYVVQEAIIVIKDIFRRYPNTYE-----SIIATLCESLDT 396 (772)
Q Consensus 331 ~v~aIg~la~k~~~~--------~~~~vd~Ll~ll~~~~-~~v~~e~i~~l~~i~~~~p~~~~-----~ii~~L~~~l~~ 396 (772)
++++|+.++...+.. ....+..|++++.... ..+..+++..+.++... ++.+. .+++.|++.+.+
T Consensus 327 a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i~~~~~i~~Lv~lL~~ 405 (644)
T 2z6h_A 327 AICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR 405 (644)
T ss_dssp HHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHHHHcCCHHHHHHHHhc
Confidence 999999997532211 1235788899998765 47888888888888653 32222 345666666643
Q ss_pred CChHHHHHHHHHHHhh--hcccc--------------------CCH-----HHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 004132 397 LDEPEAKASMIWIIGE--YAERI--------------------DNA-----DELLESFLESFPEEPAQVQLQLLTATVKL 449 (772)
Q Consensus 397 ~~~p~a~~~~iwilGE--y~~~i--------------------~~~-----~~~L~~l~~~f~~e~~~vq~~lLta~~Kl 449 (772)
.+++.+..++|.++. +.+-. .+. ...+..+++-+.+.++.+|.....++.++
T Consensus 406 -~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l 484 (644)
T 2z6h_A 406 -AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 484 (644)
T ss_dssp -HHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -cchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 233444445555544 21100 000 01244555566678899999999998888
Q ss_pred hhcCCCCChHHH------HHHHHHhhhcCCCChHHHhhHHHHHHHhcC
Q 004132 450 FLKKPTEGPQQM------IQVVLNNATVETDNPDLRDRAYIYWRLLST 491 (772)
Q Consensus 450 ~~~~p~~~~~~~------v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~ 491 (772)
... ++ .... +..+.+. . .+.|++||..|.....-+..
T Consensus 485 ~~~-~~--~~~~i~~~g~l~~L~~l-l-~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 485 AQD-KE--AAEAIEAEGATAPLTEL-L-HSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HTS-HH--HHHHHHHTTCHHHHHHH-T-TCSCHHHHHHHHHHHHHHTT
T ss_pred HcC-HH--HHHHHHHcCChhHHHHH-H-cCCCHHHHHHHHHHHHHHhc
Confidence 643 21 2222 2334443 2 46899999999877666654
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.40 E-value=1.3e-10 Score=132.69 Aligned_cols=435 Identities=11% Similarity=0.104 Sum_probs=270.2
Q ss_pred CcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----hH--HHHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhc
Q 004132 41 PDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----IT--EYLCDPLQRCLKD-DDPYVRKTAAICVAKLYDIN 112 (772)
Q Consensus 41 ~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~e-----i~--~~l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~~ 112 (772)
++...-++..+.+-++++|+.+|..|+.+|+++...+ +. +..++.+.+.|.+ .++.+|+.|+.++.++...
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~- 90 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH- 90 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-
Confidence 4445556788888889999999999999999885321 11 2467778888865 5899999999999998642
Q ss_pred cc---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccc-cHHHHHHHHHHhhcCChhHHHHHHHHHhcc
Q 004132 113 AE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRY 188 (772)
Q Consensus 113 p~---~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~ 188 (772)
++ .+.+.+.++.|.++|.+.++.|+..|+.+|..++..+....-.+ ....+..|++.+.+.++-.+.....+|..+
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22 22234788999999999999999999999999987653321111 234577788888777666666666777766
Q ss_pred ccCCHHHHH-----HHHHHHhHhhcCCCH-HHHHHHHHHHHHhhhhcCChHHHHHHH-HhcccchhhccC-CchhHHHHH
Q 004132 189 KAADAREAE-----NIVERVTPRLQHANC-AVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVA 260 (772)
Q Consensus 189 ~~~~~~e~~-----~il~~v~~~L~~~n~-aVv~eaik~i~~~~~~i~~~~~~~~l~-~~~~~~L~~Lls-~~~~iryva 260 (772)
...+++... ..++.+...+++.++ .+...+.+++.++.. +++....+. ....++|+.++. .+++++.-+
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a 247 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT---STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc---CcccHHHHHHCCCHHHHHHHHhCCChHHHHHH
Confidence 544443322 234555566665444 455556666665432 233222222 245677778774 678899999
Q ss_pred HHHHHHHHhhChhh--hhhhcc-eeeeccCCcHhHHHHHHHHHHHhccc--ccHHHH-----HHHHHHhhhhc--cHHHH
Q 004132 261 LRNINLIVQRRPTI--LAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASD--RNIDQV-----LLEFKEYATEV--DVDFV 328 (772)
Q Consensus 261 L~~l~~i~~~~p~~--~~~~~~-if~~~~~d~~~Ik~~kL~lL~~L~n~--~Nv~~I-----l~EL~~y~~~~--d~~~~ 328 (772)
+..+..+....+.. ....+. .+..+.+++..++..+..+|..|+.. ++...+ +..|.+.+.+. +.+.+
T Consensus 248 ~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~ 327 (529)
T 1jdh_A 248 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327 (529)
T ss_dssp HHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHH
Confidence 99999998754321 111111 12334567788999999999999874 344433 45666666542 36889
Q ss_pred HHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHhCcccHH-----HHHHHHHHhc
Q 004132 329 RKAVRAIGRCAIKLERAA--------ERCISVLLELIKIKVN-YVVQEAIIVIKDIFRRYPNTYE-----SIIATLCESL 394 (772)
Q Consensus 329 ~~~v~aIg~la~k~~~~~--------~~~vd~Ll~ll~~~~~-~v~~e~i~~l~~i~~~~p~~~~-----~ii~~L~~~l 394 (772)
..++++++.++...+... ...+..|++++....+ .+..+++..+.++... ++.+. .+++.|++.+
T Consensus 328 ~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll 406 (529)
T 1jdh_A 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLL 406 (529)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHH
Confidence 999999999876432211 1237788888887764 7888888888888653 33332 3466777777
Q ss_pred ccCChHHHHHHHHHHHhh--hcccc-----------------CCHH--------HHHHHHhhhCCCCCHHHHHHHHHHHH
Q 004132 395 DTLDEPEAKASMIWIIGE--YAERI-----------------DNAD--------ELLESFLESFPEEPAQVQLQLLTATV 447 (772)
Q Consensus 395 ~~~~~p~a~~~~iwilGE--y~~~i-----------------~~~~--------~~L~~l~~~f~~e~~~vq~~lLta~~ 447 (772)
.+ .+++.+..++|.++. +.+-. .++. ..+..+++-..+.++.+|.....++.
T Consensus 407 ~~-~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~ 485 (529)
T 1jdh_A 407 VR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485 (529)
T ss_dssp HH-HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HH-HhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHH
Confidence 54 456677778887775 22110 0100 12234455555667888888877777
Q ss_pred HHhhcCCCCChHH------HHHHHHHhhhcCCCChHHHhhHHHHH
Q 004132 448 KLFLKKPTEGPQQ------MIQVVLNNATVETDNPDLRDRAYIYW 486 (772)
Q Consensus 448 Kl~~~~p~~~~~~------~v~~vl~~~~~~s~~~dvrdRA~~y~ 486 (772)
.+... +. ... .+..+.+. . ++.|++||.+|....
T Consensus 486 ~l~~~-~~--~~~~i~~~~~~~~L~~l-~-~~~~~~v~~~a~~aL 525 (529)
T 1jdh_A 486 ELAQD-KE--AAEAIEAEGATAPLTEL-L-HSRNEGVATYAAAVL 525 (529)
T ss_dssp HHTTS-HH--HHHHHHHTTCHHHHHHG-G-GCSSHHHHHHHHHHH
T ss_pred HHhcC-HH--HHHHHHHcCChHHHHHH-h-cCCCHHHHHHHHHHH
Confidence 76532 11 111 12233332 2 357888888886544
No 29
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.37 E-value=2e-10 Score=145.20 Aligned_cols=480 Identities=10% Similarity=0.121 Sum_probs=300.4
Q ss_pred ccchhHHHHHhhc-CCCcchHHHHHHHHHHhccCCCc----HHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hhhh
Q 004132 7 VSSLFTDVVNCMQ-TENLELKKLVYLYLINYAKSQPD----LAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VDKI 78 (772)
Q Consensus 7 vs~lf~~vi~l~~-s~~~~lKrl~YL~l~~~~~~~~d----l~lL~iNtl~kDl~~~np~iralALrtl~~I~---~~ei 78 (772)
...+++.+++++. +++...|.-+.-.+..+.+..++ ..--++..|.+-+.|+++.+|..|+++++.+. .+++
T Consensus 131 ~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~ 210 (1230)
T 1u6g_C 131 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV 210 (1230)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH
Confidence 4456777777887 47776666666666666532211 22345677888889999999999999988765 2334
Q ss_pred HHHHHHHHHhhhCCC-ChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCc
Q 004132 79 TEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (772)
Q Consensus 79 ~~~l~~~v~~~L~d~-~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~ 155 (772)
.+.+++.+.+.|.+. ++-+|+.|+.|+..+....|+.+.. ..+++.+...+.|.++.|...++.++..+....+...
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~ 290 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV 290 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 445556666666543 3679999999999999877654431 3578889999999999999999988888877544322
Q ss_pred ccccHHHHHHHHHHhhc------------------------------------CChhH-HHHHHHHHhccccCCH----H
Q 004132 156 FEITSHTLSKLLTALNE------------------------------------CTEWG-QVFILDALSRYKAADA----R 194 (772)
Q Consensus 156 ~~l~~~~~~~Ll~~L~~------------------------------------~~ew~-qv~iL~~L~~~~~~~~----~ 194 (772)
-......+..+++.+.. ...|. +...+++|..+....+ .
T Consensus 291 ~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~ 370 (1230)
T 1u6g_C 291 YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE 370 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 12223333444443321 01243 3334444443332111 1
Q ss_pred HHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCC-----------------hHHHHHHHHhcccchhhccC-CchhH
Q 004132 195 EAENIVERVTPRLQHANCAVVLSAVKMILQQMELITS-----------------TDVVRNLCKKMAPPLVTLLS-AEPEI 256 (772)
Q Consensus 195 e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~-----------------~~~~~~l~~~~~~~L~~Lls-~~~~i 256 (772)
-...+++.+..++++.+..|..++++++..+...+.. ...+..+...+.+.+...+. .++.+
T Consensus 371 ~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~v 450 (1230)
T 1u6g_C 371 FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT 450 (1230)
T ss_dssp HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHH
Confidence 2223344555566777889999998887665432211 12223333344444455564 67889
Q ss_pred HHHHHHHHHHHHhhChhhhhhhcc-----eeeeccCCc--HhHHHHHHHHHHHhcc---ccc----HHHHHHHHHHhhhh
Q 004132 257 QYVALRNINLIVQRRPTILAHEIK-----VFFCKYNDP--IYVKMEKLEIMIKLAS---DRN----IDQVLLEFKEYATE 322 (772)
Q Consensus 257 ryvaL~~l~~i~~~~p~~~~~~~~-----if~~~~~d~--~~Ik~~kL~lL~~L~n---~~N----v~~Il~EL~~y~~~ 322 (772)
|..++..+..++...+..+.+|+. ++..+.+.. ..++..++..+..++. ++. +..++..|...+.+
T Consensus 451 r~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d 530 (1230)
T 1u6g_C 451 RQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD 530 (1230)
T ss_dssp HHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcc
Confidence 999999999999887765555432 223333322 4788888888887753 332 33566666677777
Q ss_pred ccHHHHHHHHHHHHHHHHhhh-----------hhHHHHHHHHHHHH--hhccchhHHHHHHHHHHHHHhCccc----HHH
Q 004132 323 VDVDFVRKAVRAIGRCAIKLE-----------RAAERCISVLLELI--KIKVNYVVQEAIIVIKDIFRRYPNT----YES 385 (772)
Q Consensus 323 ~d~~~~~~~v~aIg~la~k~~-----------~~~~~~vd~Ll~ll--~~~~~~v~~e~i~~l~~i~~~~p~~----~~~ 385 (772)
.+..++..++.+++.++..+. +..+..+..++..+ ......+++.++..+..+.....+. ...
T Consensus 531 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~ 610 (1230)
T 1u6g_C 531 PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPN 610 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHH
Confidence 777777888888988886543 23345566666666 3334457788888888888765432 345
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHhhhccccC------CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChH
Q 004132 386 IIATLCESLDTLDEPEAKASMIWIIGEYAERID------NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQ 459 (772)
Q Consensus 386 ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~------~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~ 459 (772)
++..|.+.+. ....+...++.+|+-+.... ...+++..+...+.+++..+|...+.++.++....+..-..
T Consensus 611 ~l~~L~~~l~---~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~ 687 (1230)
T 1u6g_C 611 TLQIFLERLK---NEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 687 (1230)
T ss_dssp HHHHHHHHTT---SSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCH
T ss_pred HHHHHHHHhc---cchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCH
Confidence 5555555543 23356667888887543211 13577777777888899999999999999999887743123
Q ss_pred HHHHHHHHhhh--cCCCChHHHhhHHHHHHHh
Q 004132 460 QMIQVVLNNAT--VETDNPDLRDRAYIYWRLL 489 (772)
Q Consensus 460 ~~v~~vl~~~~--~~s~~~dvrdRA~~y~~Ll 489 (772)
+.+..++.... .+..|.+++..++..+.-+
T Consensus 688 ~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l 719 (1230)
T 1u6g_C 688 AMIDAVLDELPPLISESDMHVSQMAISFLTTL 719 (1230)
T ss_dssp HHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Confidence 44555553221 1246788888888776644
No 30
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.36 E-value=1.1e-09 Score=125.56 Aligned_cols=329 Identities=14% Similarity=0.132 Sum_probs=227.8
Q ss_pred chhHHHHHhhcCCCcchHHHHHHHHHHhc--cCCCcHHHH----HHHHHHhhcC-CCCHHHHhHHHHHhcCCC--hhhhH
Q 004132 9 SLFTDVVNCMQTENLELKKLVYLYLINYA--KSQPDLAIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKIT 79 (772)
Q Consensus 9 ~lf~~vi~l~~s~~~~lKrl~YL~l~~~~--~~~~dl~lL----~iNtl~kDl~-~~np~iralALrtl~~I~--~~ei~ 79 (772)
+-..++|+.+.|+|.+.+.-+--.+..++ +.+|..-.+ ++..|.+-|+ +.++.++..|.++|++|. +++..
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 44789999999999998777766666543 344543222 3677888886 567999999999999883 44444
Q ss_pred HH-----HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCCh-----hHHHHHHHHHHH
Q 004132 80 EY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-----MVVANAVAALAE 146 (772)
Q Consensus 80 ~~-----l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~L~~lL~D~d~-----~Vv~~av~aL~e 146 (772)
.. .+|.+.++|.++++.||..|+.|+..+...+|+ .+...|.++.|..+|.+.+. .++.+++.++..
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 33 468899999999999999999999999866554 34445778999999986553 456778888888
Q ss_pred HHhhCC-CCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHH-----HHHHHhHhhcCCCHHHHHHHHH
Q 004132 147 IEENSS-RPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVK 220 (772)
Q Consensus 147 I~~~~~-~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~-----il~~v~~~L~~~n~aVv~eaik 220 (772)
++.... ...+....+.+..|.+.+...++..+.....+|..+...+.+.... +++.+..+|++.+..|...|++
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~ 296 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHH
Confidence 876532 2223334556677777788888988888888888776554433332 4567888999999999999999
Q ss_pred HHHHhhhhcCChHHHHHH-HHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhh----hh-cc-eeeeccCCcHhH
Q 004132 221 MILQQMELITSTDVVRNL-CKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA----HE-IK-VFFCKYNDPIYV 292 (772)
Q Consensus 221 ~i~~~~~~i~~~~~~~~l-~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~----~~-~~-if~~~~~d~~~I 292 (772)
++.++.. .++.....+ -..+.++|+.|++ .++++|..+...|..|....++... .. +. .+.++.+.+..+
T Consensus 297 aL~nl~~--~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 297 AIGNIVT--GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp HHHHHTT--SCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHhhc--CCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 9988642 233333322 2356777888885 6889999999999999866543211 11 11 233445666778
Q ss_pred HHHHHHHHHHhcccccHH---HH-----HHHHHHhhhhccHHHHHHHHHHHHHHH
Q 004132 293 KMEKLEIMIKLASDRNID---QV-----LLEFKEYATEVDVDFVRKAVRAIGRCA 339 (772)
Q Consensus 293 k~~kL~lL~~L~n~~Nv~---~I-----l~EL~~y~~~~d~~~~~~~v~aIg~la 339 (772)
|+.+.-.|..++...+.+ .+ ++-|.+.++..|.+++..++.+|..+.
T Consensus 375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 888888887776543332 22 455666677777777776666665544
No 31
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.36 E-value=3.2e-10 Score=129.42 Aligned_cols=434 Identities=12% Similarity=0.048 Sum_probs=275.9
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcH-HHH----HHHHHHhhcC-CCCHHHHhHHHHHhcCCCh-hhhHH--
Q 004132 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDL-AIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIRV-DKITE-- 80 (772)
Q Consensus 10 lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl-~lL----~iNtl~kDl~-~~np~iralALrtl~~I~~-~ei~~-- 80 (772)
..+..++++.+++...+.-+-..+.+++...+.. .++ ++..+.+-+. ++++.+|..|+++|+++.. ++..+
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 4677788999999999998888888888755432 111 3556666664 3589999999998888753 22222
Q ss_pred ---HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC
Q 004132 81 ---YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (772)
Q Consensus 81 ---~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~---~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~ 154 (772)
-.++.+.++|.++++-||+.|+.++.++...+++. +.+.+.++.|.++|.+.++.+...++.+|..+...++..
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 25678999999999999999999999998765542 324578899999999999999999888888776532111
Q ss_pred cccc-cHHHHHHHHHHhhcCCh-hHHHHHHHHHhccccCC--HHHH--HHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhh
Q 004132 155 IFEI-TSHTLSKLLTALNECTE-WGQVFILDALSRYKAAD--AREA--ENIVERVTPRLQHANCAVVLSAVKMILQQMEL 228 (772)
Q Consensus 155 ~~~l-~~~~~~~Ll~~L~~~~e-w~qv~iL~~L~~~~~~~--~~e~--~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~ 228 (772)
...+ ....+..|+..+.+.++ ..+.....+|..+.... .... ...++.+...+++.++.++..++.++.++...
T Consensus 178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Confidence 1011 11235566666655443 23333444444433211 1111 24567788888888999999999999887543
Q ss_pred cCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhh---hh--cc-eeeec--cCCcHhHHHHHHHH
Q 004132 229 ITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA---HE--IK-VFFCK--YNDPIYVKMEKLEI 299 (772)
Q Consensus 229 i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~---~~--~~-if~~~--~~d~~~Ik~~kL~l 299 (772)
....... ..+.+.|+.++. .+++++..++..|..+....++... .. +. .+..+ .+++..++..++..
T Consensus 258 ~~~~~~~----~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~ 333 (529)
T 1jdh_A 258 ATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333 (529)
T ss_dssp CTTCSCC----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChhhHHH----HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence 2221111 135566778774 6899999999999999876542211 11 11 11222 23447899999999
Q ss_pred HHHhcccc--c---HHH-----HHHHHHHhhhhcc-HHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHhhccchh
Q 004132 300 MIKLASDR--N---IDQ-----VLLEFKEYATEVD-VDFVRKAVRAIGRCAIKLERAA----ERCISVLLELIKIKVNYV 364 (772)
Q Consensus 300 L~~L~n~~--N---v~~-----Il~EL~~y~~~~d-~~~~~~~v~aIg~la~k~~~~~----~~~vd~Ll~ll~~~~~~v 364 (772)
|..|+... + ... .+.-|...+.+.+ .++++.++.+|+.++..-+... ...+..|++++......+
T Consensus 334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHH
Confidence 99998642 1 122 3455667776655 5899999999999885322111 124677888877644333
Q ss_pred HH----------------------HHHHHHHHHHHhCcccHH-----HHHHHHHHhcccCChHHHHHHHHHHHhhhcccc
Q 004132 365 VQ----------------------EAIIVIKDIFRRYPNTYE-----SIIATLCESLDTLDEPEAKASMIWIIGEYAERI 417 (772)
Q Consensus 365 ~~----------------------e~i~~l~~i~~~~p~~~~-----~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i 417 (772)
.. .++..+..+.+ .++.+. .+++.+++.+.+ ..++++..+.|.+++.+..-
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~-~~~~v~~~a~~~l~~l~~~~ 491 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYS-PIENIQRVAAGVLCELAQDK 491 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcC-CchHHHHHHHHHHHHHhcCH
Confidence 33 23334444432 233222 235677777765 45778888999999876421
Q ss_pred CCHH-----HHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 004132 418 DNAD-----ELLESFLESFPEEPAQVQLQLLTATVKL 449 (772)
Q Consensus 418 ~~~~-----~~L~~l~~~f~~e~~~vq~~lLta~~Kl 449 (772)
+... ..++.+.+-..+++++|+.....++.++
T Consensus 492 ~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 492 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1111 1223333334567899999888888776
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.34 E-value=1e-09 Score=129.33 Aligned_cols=436 Identities=13% Similarity=0.079 Sum_probs=279.8
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHH-----HHHHHHHhhcCC-CCHHHHhHHHHHhcCCCh-hhhHH---
Q 004132 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAI-----LAVNTFVKDSQD-PNPLIRALAVRTMGCIRV-DKITE--- 80 (772)
Q Consensus 11 f~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~l-----L~iNtl~kDl~~-~np~iralALrtl~~I~~-~ei~~--- 80 (772)
.+..++++.+++...|..+-..+.+++...+.... -++..+.+-|.+ .++.+|..|+++|.++.. ++...
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 67778899999999999999999999887654321 135566666655 489999888888887652 22211
Q ss_pred --HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCc
Q 004132 81 --YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI 155 (772)
Q Consensus 81 --~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~---~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~ 155 (772)
..++.+.++|.+.++.||+.|+.++.++...+++. +.+.+.++.|.++|.+.++.+...++.+|..++..+....
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~ 175 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHH
Confidence 25688999999999999999999999998765432 2245789999999999999999888888888875321111
Q ss_pred ccc-cHHHHHHHHHHhhcCC-h---hHHHHHHHHHhccccCCHHHH--HHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhh
Q 004132 156 FEI-TSHTLSKLLTALNECT-E---WGQVFILDALSRYKAADAREA--ENIVERVTPRLQHANCAVVLSAVKMILQQMEL 228 (772)
Q Consensus 156 ~~l-~~~~~~~Ll~~L~~~~-e---w~qv~iL~~L~~~~~~~~~e~--~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~ 228 (772)
..+ ....+..|++.+.+.+ + |.-..+|..|... +...... ...++.+...+++.+..++..++.++.++...
T Consensus 176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 111 1134566666666544 2 3334444444432 2111111 13567778888888999999999999887543
Q ss_pred cCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhh----hhhh-cc-eeeecc--CCcHhHHHHHHHH
Q 004132 229 ITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTI----LAHE-IK-VFFCKY--NDPIYVKMEKLEI 299 (772)
Q Consensus 229 i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~----~~~~-~~-if~~~~--~d~~~Ik~~kL~l 299 (772)
....... ..+.+.|+.++. .++++|..+...|..|....+.. +... +. .+..+. ++...++..++..
T Consensus 255 ~~~~~~~----~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 255 ATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp CTTCCSC----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhhhhh----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 2111111 135566777774 68999999999999998765431 1111 11 122222 2336899999999
Q ss_pred HHHhccccc----HH------HHHHHHHHhhhhcc-HHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHhhccc--
Q 004132 300 MIKLASDRN----ID------QVLLEFKEYATEVD-VDFVRKAVRAIGRCAIKLERA----AERCISVLLELIKIKVN-- 362 (772)
Q Consensus 300 L~~L~n~~N----v~------~Il~EL~~y~~~~d-~~~~~~~v~aIg~la~k~~~~----~~~~vd~Ll~ll~~~~~-- 362 (772)
|..|+.... .+ ..+..|.+.+.+.+ .++++.++.+|+.++..-+.. ....+..|++++.....
T Consensus 331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhh
Confidence 999985321 11 24666777776654 689999999999988532111 12357777787776432
Q ss_pred --------------------hhHHHHHHHHHHHHHhCcccHH-----HHHHHHHHhcccCChHHHHHHHHHHHhhhcccc
Q 004132 363 --------------------YVVQEAIIVIKDIFRRYPNTYE-----SIIATLCESLDTLDEPEAKASMIWIIGEYAERI 417 (772)
Q Consensus 363 --------------------~v~~e~i~~l~~i~~~~p~~~~-----~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i 417 (772)
.+...++..+..+.+ .++.+. .+++.|++.+.+ ..++++..++|.+++.+..-
T Consensus 411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~ 488 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYS-PIENIQRVAAGVLCELAQDK 488 (644)
T ss_dssp TTC----------CCSSCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSH
T ss_pred hhHhhhccccchhcccccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCH
Confidence 233334445554432 232222 246778888865 45778888999988876421
Q ss_pred CCHH-----HHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcC
Q 004132 418 DNAD-----ELLESFLESFPEEPAQVQLQLLTATVKLFLKK 453 (772)
Q Consensus 418 ~~~~-----~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~ 453 (772)
+... ..++.+.+-..+++++||.....++.++....
T Consensus 489 ~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 489 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 1111 11233444455678888888888888876544
No 33
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.33 E-value=2.2e-10 Score=136.25 Aligned_cols=365 Identities=15% Similarity=0.148 Sum_probs=245.1
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHH----HHHHHHhhcCCCCHHHHhHHHHHhcCCCh--------hh
Q 004132 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL----AVNTFVKDSQDPNPLIRALAVRTMGCIRV--------DK 77 (772)
Q Consensus 10 lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL----~iNtl~kDl~~~np~iralALrtl~~I~~--------~e 77 (772)
..+.++.++++++...++-++-++.+.+.. ++..-. -+..|.+-+++.++.+|..|+-+||+++. +.
T Consensus 291 ~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~ 369 (810)
T 3now_A 291 ILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRP 369 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCS
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccc
Confidence 346677899999999999999888886544 443322 24566777788899999999999998852 11
Q ss_pred h----HHHHHHHHHhhhCCC--ChHHHHHHHHHHHHHHhhcc---ccccccchHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004132 78 I----TEYLCDPLQRCLKDD--DPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (772)
Q Consensus 78 i----~~~l~~~v~~~L~d~--~pyVRK~Aa~~l~kl~~~~p---~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~ 148 (772)
+ ++.+.+.++++|.++ ++-+|+.|+.|+..+-...+ +++.+.++++.|..+|+..|+.++..|+.+|.-|.
T Consensus 370 ~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt 449 (810)
T 3now_A 370 FGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLC 449 (810)
T ss_dssp STTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 2 467788899999998 89999999999999864322 34555689999999999999999999999999998
Q ss_pred hhCCCC-----c-----c-----------------------cccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHH
Q 004132 149 ENSSRP-----I-----F-----------------------EITSHTLSKLLTALNECTEWGQVFILDALSRYKAADARE 195 (772)
Q Consensus 149 ~~~~~~-----~-----~-----------------------~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e 195 (772)
...... . + -+..+.+..|+..+...++=.|.....+|..... +++.
T Consensus 450 ~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~ 528 (810)
T 3now_A 450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKEL 528 (810)
T ss_dssp TCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHH
T ss_pred CCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHH
Confidence 643100 0 0 0011245556666667788888888888888863 4433
Q ss_pred HHH-----HHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHH--HHHHHhcccchhhccCCc--hhHHHHHHHHHHH
Q 004132 196 AEN-----IVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVV--RNLCKKMAPPLVTLLSAE--PEIQYVALRNINL 266 (772)
Q Consensus 196 ~~~-----il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~--~~l~~~~~~~L~~Lls~~--~~iryvaL~~l~~ 266 (772)
... .++.+..+|++....+...|+.++.++.-. .+++.. .+....++++|+.||+++ ...++-|+.+|..
T Consensus 529 r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~-~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~N 607 (810)
T 3now_A 529 RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGIT-INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcC-CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 322 356677888888888899999999876432 244321 011224788999999643 3456889999998
Q ss_pred HHhhChh----hhhhh-c-ceeeeccCCcHhHHHHHHHHHHHhccccc-HHH------HHHHHHHhhhhccHHHHHHHHH
Q 004132 267 IVQRRPT----ILAHE-I-KVFFCKYNDPIYVKMEKLEIMIKLASDRN-IDQ------VLLEFKEYATEVDVDFVRKAVR 333 (772)
Q Consensus 267 i~~~~p~----~~~~~-~-~if~~~~~d~~~Ik~~kL~lL~~L~n~~N-v~~------Il~EL~~y~~~~d~~~~~~~v~ 333 (772)
|+...++ ++... + +...++.++...|++.++++|..|+.... ... .++-|..++...|.+.++.+..
T Consensus 608 La~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ 687 (810)
T 3now_A 608 LASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAG 687 (810)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHH
Confidence 8865432 22211 1 23445566777899999999998875422 222 3445556777777888888888
Q ss_pred HHHHHHHhhhhhH------HHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 004132 334 AIGRCAIKLERAA------ERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (772)
Q Consensus 334 aIg~la~k~~~~~------~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~ 377 (772)
+|+.++...+... ..++..|++++..+...+..+++..+.++..
T Consensus 688 ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 688 ALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 8887776322211 1233455555554444444444444444443
No 34
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.32 E-value=3e-09 Score=126.50 Aligned_cols=400 Identities=12% Similarity=0.085 Sum_probs=269.4
Q ss_pred hHHHHH-hhcCCCcchHHHHHHHHHHhccCCCcHHHH------HHHHHHhhcCCCCHHHHhHHHHHhcCCChhh-----h
Q 004132 11 FTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAIL------AVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-----I 78 (772)
Q Consensus 11 f~~vi~-l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL------~iNtl~kDl~~~np~iralALrtl~~I~~~e-----i 78 (772)
+-+.++ .+...+.+-|-.+.-+++.++.-.+|..-- ++..|.+-+.++++.++-.|+..++.+.... +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I 327 (810)
T 3now_A 248 IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKAL 327 (810)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTT
T ss_pred HHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 344444 456777777777777899998888775442 3467788889999999999998888876543 2
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh---ccc--cccc---cchHHHHHHhhcCC--ChhHHHHHHHHHHHHH
Q 004132 79 TEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI---NAE--LVED---RGFLESLKDLISDN--NPMVVANAVAALAEIE 148 (772)
Q Consensus 79 ~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~---~p~--~~~~---~~~~~~L~~lL~D~--d~~Vv~~av~aL~eI~ 148 (772)
.+.-.+.+.+++.++++.+|..|+.++.|+-.. ++. .+.. ..+++.+.++|.+. |+.++.+|+-+|..+.
T Consensus 328 ~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS 407 (810)
T 3now_A 328 CEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLT 407 (810)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHT
T ss_pred HHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 233358899999999999999999999999642 222 2222 23577888999877 8999999999999997
Q ss_pred hhCCC-CcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCH---------------------------H-HH---
Q 004132 149 ENSSR-PIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA---------------------------R-EA--- 196 (772)
Q Consensus 149 ~~~~~-~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~---------------------------~-e~--- 196 (772)
..... ..+......+..|+..|+..++=.|...+.+|.+.....+ . ..
T Consensus 408 ~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r 487 (810)
T 3now_A 408 LDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKR 487 (810)
T ss_dssp TSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHH
Confidence 53211 1122335678888888877676677777777776553210 0 11
Q ss_pred -H-----HHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH-Hhcccchhhcc-CCchhHHHHHHHHHHHHH
Q 004132 197 -E-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL-SAEPEIQYVALRNINLIV 268 (772)
Q Consensus 197 -~-----~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~-~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~ 268 (772)
. ..++.+..++++.++.|.-+|++++.++. .+++....+. ..++++|+.++ +.++..|..|.++|..|+
T Consensus 488 ~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA---~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~ 564 (810)
T 3now_A 488 ITVLANEGITTALCALAKTESHNSQELIARVLNAVC---GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564 (810)
T ss_dssp HHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH---TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc---CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHh
Confidence 1 23456677889999999999999999874 2444333332 24678899988 468899999999999987
Q ss_pred hh-Chhh-hhh-----hcc-eeeeccCC-cHhHHHHHHHHHHHhccc--ccHHHHH-----HHHHHhhhhccHHHHHHHH
Q 004132 269 QR-RPTI-LAH-----EIK-VFFCKYND-PIYVKMEKLEIMIKLASD--RNIDQVL-----LEFKEYATEVDVDFVRKAV 332 (772)
Q Consensus 269 ~~-~p~~-~~~-----~~~-if~~~~~d-~~~Ik~~kL~lL~~L~n~--~Nv~~Il-----~EL~~y~~~~d~~~~~~~v 332 (772)
.. +|.. |.. -+. .+..+.++ +...+..++..|..|+.. ++...|+ ..|.+++.+.+..+++.+.
T Consensus 565 ~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~ 644 (810)
T 3now_A 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAA 644 (810)
T ss_dssp HHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHH
T ss_pred cCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHH
Confidence 64 4543 211 111 12233444 445567899999999863 4555544 4577777777888889999
Q ss_pred HHHHHHHHhhhhh---H--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHH------HHHHHHHHhcccCChHH
Q 004132 333 RAIGRCAIKLERA---A--ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE------SIIATLCESLDTLDEPE 401 (772)
Q Consensus 333 ~aIg~la~k~~~~---~--~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~------~ii~~L~~~l~~~~~p~ 401 (772)
++|+.++..-+.. . ...+..|+.++......+..++.-.+..+...+++... ..++.|++.+.+ .+++
T Consensus 645 ~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s-~d~~ 723 (810)
T 3now_A 645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSPA 723 (810)
T ss_dssp HHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC-SSHH
T ss_pred HHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC-CCHH
Confidence 9998887521110 0 12456677777776666777776677766654444322 244566666654 5666
Q ss_pred HHHHHHHHHhhhc
Q 004132 402 AKASMIWIIGEYA 414 (772)
Q Consensus 402 a~~~~iwilGEy~ 414 (772)
.+..++|+++...
T Consensus 724 vq~~A~~aL~NL~ 736 (810)
T 3now_A 724 VQHRGIVIILNMI 736 (810)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777788877654
No 35
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.27 E-value=3.1e-09 Score=121.75 Aligned_cols=329 Identities=19% Similarity=0.148 Sum_probs=219.6
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhc----CCChh---hhHHH-HHHHHHhhhCC-CChHHHHHHHHHHHHHHhhcccc--
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRTMG----CIRVD---KITEY-LCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAEL-- 115 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrtl~----~I~~~---ei~~~-l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~~p~~-- 115 (772)
.+.-+.+.+++.|+..+--|.+.+- .=+.| ++++. ++|.+.++|++ .++.|+..|+.|+..+...+++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3566778888888877766554332 22332 44443 67889999975 56899999999999998766653
Q ss_pred -ccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcc-cccHHHHHHHHHHhhcCC-----hhHHHHHHHHHhcc
Q 004132 116 -VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF-EITSHTLSKLLTALNECT-----EWGQVFILDALSRY 188 (772)
Q Consensus 116 -~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~-~l~~~~~~~Ll~~L~~~~-----ew~qv~iL~~L~~~ 188 (772)
+.+.|.++.|..+|.+.++.|...|+.+|..|+..++...- -.....+..|+..+...+ ...+..+...|..+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 34468899999999999999999999999999865422110 011123455666664432 12233334444433
Q ss_pred cc-----CCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH-HhcccchhhccC-CchhHHHHHH
Q 004132 189 KA-----ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVAL 261 (772)
Q Consensus 189 ~~-----~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~-~~~~~~L~~Lls-~~~~iryvaL 261 (772)
.. ........+++.+..++++.++.|+..|+.++.++... ..+..+.+. ..+.+.|+.++. .++.++..++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al 295 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--hhhhHHHHHhcccchhhhhhhcCCChhhhhHHH
Confidence 22 12334467788888899999999999999999886431 333333222 245667888884 6889999999
Q ss_pred HHHHHHHhhChhh----hhhh-cc-eeeeccCCcHhHHHHHHHHHHHhcc--cccHHH-----HHHHHHHhhhhccHHHH
Q 004132 262 RNINLIVQRRPTI----LAHE-IK-VFFCKYNDPIYVKMEKLEIMIKLAS--DRNIDQ-----VLLEFKEYATEVDVDFV 328 (772)
Q Consensus 262 ~~l~~i~~~~p~~----~~~~-~~-if~~~~~d~~~Ik~~kL~lL~~L~n--~~Nv~~-----Il~EL~~y~~~~d~~~~ 328 (772)
+.|..|+...+.. +... +. ...++.+.+..||..+.-.|..|+. +++... ++.-|...+.+.+.+++
T Consensus 296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 375 (510)
T 3ul1_B 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 375 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHH
Confidence 9999998665432 2211 22 2345667778999999999999974 334443 45567788888899999
Q ss_pred HHHHHHHHHHHHhhhhh------HHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 004132 329 RKAVRAIGRCAIKLERA------AERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (772)
Q Consensus 329 ~~~v~aIg~la~k~~~~------~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~ 377 (772)
++++.+|+.++..-... ..-++..|+++|+.....+...++..+.+|++
T Consensus 376 ~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999988743211 11246677777777666666666666655554
No 36
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.27 E-value=3.5e-10 Score=118.60 Aligned_cols=192 Identities=19% Similarity=0.141 Sum_probs=143.6
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-hhhhHHHHHHHHH-h
Q 004132 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-VDKITEYLCDPLQ-R 88 (772)
Q Consensus 11 f~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~-~~ei~~~l~~~v~-~ 88 (772)
....++.+.+++...|+.+.-.+..+.. ++ ++..+.+-++|+++.+|..|+.+|+.++ .++..+.+.+.+. .
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG--QD----AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM 98 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--HH----HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC--ch----HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 4567788889999888888778877762 22 5678888999999999999999999998 4455566666666 4
Q ss_pred hhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHH
Q 004132 89 CLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLT 168 (772)
Q Consensus 89 ~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~ 168 (772)
++.|+++.||..|+.+++++...+|...+ ..++.|..+|.|.|+.|...|+.+|..+.... .+..|+.
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~~--~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~----------~~~~L~~ 166 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYSP--KIVEQSQITAFDKSTNVRRATAFAISVINDKA----------TIPLLIN 166 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHTTCSCHHHHHHHHHHHHTC---C----------CHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCcccH--HHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH----------HHHHHHH
Confidence 67899999999999999999876654433 37888999999999999999999998775321 2455666
Q ss_pred HhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHH
Q 004132 169 ALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQ 224 (772)
Q Consensus 169 ~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~ 224 (772)
.+.+.+++.+...+..|..+...++ .+++.+...+++.++.|..+|+.++..
T Consensus 167 ~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 167 LLKDPNGDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 6667777777777777776643332 344555666677777777777777765
No 37
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.26 E-value=5.8e-09 Score=119.92 Aligned_cols=330 Identities=14% Similarity=0.130 Sum_probs=227.0
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhc--cCCCcHHHH----HHHHHHhhcC-CCCHHHHhHHHHHhcCCC--hhhh
Q 004132 8 SSLFTDVVNCMQTENLELKKLVYLYLINYA--KSQPDLAIL----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKI 78 (772)
Q Consensus 8 s~lf~~vi~l~~s~~~~lKrl~YL~l~~~~--~~~~dl~lL----~iNtl~kDl~-~~np~iralALrtl~~I~--~~ei 78 (772)
.....++++.+.|+|.+.+.-+.-.+..++ +.+|-.-.+ ++..|.+-|. +.++.++..|.++|++|. .++-
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 445788999999999987766666665544 333432222 3566777774 567999999988888874 3333
Q ss_pred HHH-----HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCCh-----hHHHHHHHHHH
Q 004132 79 TEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP-----MVVANAVAALA 145 (772)
Q Consensus 79 ~~~-----l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~L~~lL~D~d~-----~Vv~~av~aL~ 145 (772)
... .++.+.++|.++++.||..|+.|++.+...+|+ .+...|.++.|..+|.+.+. .++.+++.++.
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~ 234 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 234 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence 322 468899999999999999999999999876654 34445778899999976553 35677888888
Q ss_pred HHHhhCC-CCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHH-----HHHHHHhHhhcCCCHHHHHHHH
Q 004132 146 EIEENSS-RPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAV 219 (772)
Q Consensus 146 eI~~~~~-~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~-----~il~~v~~~L~~~n~aVv~eai 219 (772)
.++.... ...+....+.+..|++.+...++..+...+.+|......+.+... .+++.+..+|++.+..|...|+
T Consensus 235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 8876542 222333455667777777888888888888888776654443332 2456788889999999999999
Q ss_pred HHHHHhhhhcCChHHHHHH-HHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhh----hh-cc-eeeeccCCcHh
Q 004132 220 KMILQQMELITSTDVVRNL-CKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILA----HE-IK-VFFCKYNDPIY 291 (772)
Q Consensus 220 k~i~~~~~~i~~~~~~~~l-~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~----~~-~~-if~~~~~d~~~ 291 (772)
+++.++.. .++.....+ -..+.++|+.|++ .++++|.-+..+|..|+...+.... .. +. .+.++.+.+..
T Consensus 315 ~aL~nl~~--~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 392 (529)
T 3tpo_A 315 RAIGNIVT--GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 392 (529)
T ss_dssp HHHHHHTT--SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHc--cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence 99988642 133332222 2356778888885 6889999999999999876654221 11 11 23345566777
Q ss_pred HHHHHHHHHHHhcccc---cHHHH-----HHHHHHhhhhccHHHHHHHHHHHHHHH
Q 004132 292 VKMEKLEIMIKLASDR---NIDQV-----LLEFKEYATEVDVDFVRKAVRAIGRCA 339 (772)
Q Consensus 292 Ik~~kL~lL~~L~n~~---Nv~~I-----l~EL~~y~~~~d~~~~~~~v~aIg~la 339 (772)
+|..+.-.|..++... ++..+ +.-|.+.++..|.+++..++.+|..+.
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8888888888876433 33332 445667777778777776666665544
No 38
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.24 E-value=4e-09 Score=123.57 Aligned_cols=388 Identities=13% Similarity=0.145 Sum_probs=250.3
Q ss_pred hHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHHHH
Q 004132 25 LKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKTAA 102 (772)
Q Consensus 25 lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~--~~ei~~~l~~~v~~~L~d~~pyVRK~Aa 102 (772)
++|+.|++.. .+.-+....-+ .|-+.++|...|-++--.++.+. .++.+.-++..+++-+.|+||++|--|+
T Consensus 59 l~Kli~l~~~--G~d~s~~~~~v----vkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lAL 132 (621)
T 2vgl_A 59 VCKLLFIFLL--GHDIDFGHMEA----VNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLAL 132 (621)
T ss_dssp HHHHHHHHHH--SCCCCSCHHHH----HHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCchhHHHH----HHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 7888888654 33444444333 34667889888766655555553 4677778889999999999999999999
Q ss_pred HHHHHHHhhccccccccchHHHHHHhh--cCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHH
Q 004132 103 ICVAKLYDINAELVEDRGFLESLKDLI--SDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180 (772)
Q Consensus 103 ~~l~kl~~~~p~~~~~~~~~~~L~~lL--~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~ 180 (772)
.+++++. .|++++. +.+.+.++| .|++|.|.-.|+.++..+...++.. ... ...+.++.+.|.+.++-.+..
T Consensus 133 r~L~~i~--~~e~~~~--l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~-~~~-~~~~~~l~~lL~d~d~~V~~~ 206 (621)
T 2vgl_A 133 HCIANVG--SREMAEA--FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL-VPM-GDWTSRVVHLLNDQHLGVVTA 206 (621)
T ss_dssp HHHHHHC--CHHHHHH--HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG-CCC-CSCHHHHHHHTTCSCHHHHHH
T ss_pred HHhhccC--CHHHHHH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh-cCc-hhHHHHHHHHhCCCCccHHHH
Confidence 9999995 6888775 788999999 9999999999999999998876532 220 123556666677889888888
Q ss_pred HHHHHhccccCCHHHHHHHHHH----HhHhhcC--C-----------CHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcc
Q 004132 181 ILDALSRYKAADAREAENIVER----VTPRLQH--A-----------NCAVVLSAVKMILQQMELITSTDVVRNLCKKMA 243 (772)
Q Consensus 181 iL~~L~~~~~~~~~e~~~il~~----v~~~L~~--~-----------n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~ 243 (772)
.+.+|....+.+++....+++. +...+.. . ++-.....++++..+.+ ..+++..+.+.. +.
T Consensus 207 a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~-~~d~~~~~~l~~-~L 284 (621)
T 2vgl_A 207 ATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP-PEDPAVRGRLTE-CL 284 (621)
T ss_dssp HHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSS-CSSHHHHHHHHH-HH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCC-CCCHHHHHHHHH-HH
Confidence 8888877766555432222332 2222211 1 45566666666655432 123333222211 11
Q ss_pred cchhhc---------c-CC--chhHHHHHHHHHHHHHhhChhhhhhhccee-eeccCCcHhHHHHHHHHHHHhccccc--
Q 004132 244 PPLVTL---------L-SA--EPEIQYVALRNINLIVQRRPTILAHEIKVF-FCKYNDPIYVKMEKLEIMIKLASDRN-- 308 (772)
Q Consensus 244 ~~L~~L---------l-s~--~~~iryvaL~~l~~i~~~~p~~~~~~~~if-~~~~~d~~~Ik~~kL~lL~~L~n~~N-- 308 (772)
..+... + +. .+-+-|-+.+++..+. ..+++...-...+ ..+.+.+..+|..+|+.|..++....
T Consensus 285 ~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~ 363 (621)
T 2vgl_A 285 ETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH 363 (621)
T ss_dssp HHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH
Confidence 111111 1 11 2256666666666553 2344443322221 11235667899999999999987642
Q ss_pred --HHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHH
Q 004132 309 --IDQVLLEFKEYAT-EVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYES 385 (772)
Q Consensus 309 --v~~Il~EL~~y~~-~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ 385 (772)
+......+...+. +.|..++++++..+..++.. ...+..+..|.+.+......++.+++..+..+..+||...+.
T Consensus 364 ~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~ 441 (621)
T 2vgl_A 364 EAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTW 441 (621)
T ss_dssp HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 2233334444456 88999999999888777643 456778888999998888889999999999999999988888
Q ss_pred HHHHHHHhccc---CChHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCC
Q 004132 386 IIATLCESLDT---LDEPEAKASMIWIIGEYAERIDNADELLESFLESFP 432 (772)
Q Consensus 386 ii~~L~~~l~~---~~~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~ 432 (772)
.+..|.+.+.. .-..++...+.-++.+..+. -.+.+..+++.+.
T Consensus 442 ~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~---~~~~~~~l~~~l~ 488 (621)
T 2vgl_A 442 YVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDV---QGYAAKTVFEALQ 488 (621)
T ss_dssp HHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSC---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhCChhH---HHHHHHHHHHHHc
Confidence 88888887742 11234445555566554332 2344555555444
No 39
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.22 E-value=1.8e-09 Score=120.64 Aligned_cols=362 Identities=13% Similarity=0.087 Sum_probs=240.0
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhccC-CCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---------------
Q 004132 11 FTDVVNCMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--------------- 74 (772)
Q Consensus 11 f~~vi~l~~s~~~~lKrl~YL~l~~~~~~-~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~--------------- 74 (772)
+..++..+.++|...||-+--++..+... .|+........+.. .+.++.+|-+|.-.+.+..
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 34667777888999999999999887654 45544434444432 3457899988887766542
Q ss_pred ---hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc-cc-cccccchHHHHHHhhcCC--ChhHHHHHHHHHHHH
Q 004132 75 ---VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN-AE-LVEDRGFLESLKDLISDN--NPMVVANAVAALAEI 147 (772)
Q Consensus 75 ---~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~-p~-~~~~~~~~~~L~~lL~D~--d~~Vv~~av~aL~eI 147 (772)
.++..+.+...+.+++.+.++.| ++++.++..+.+.. |+ .. +++++.|..++.+. |+.++..|+.+|..+
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w--~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l 157 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW--PELIPQLVANVTNPNSTEHMKESTLEAIGYI 157 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC--TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc--HHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 34455667777888899999999 99999999999874 53 33 34888899999888 999999999999999
Q ss_pred HhhCCCCcc-cccHHHHHHHHHHhhcC--ChhHHHHHHHHHhccccCCH------HHHHHHHHHHhHhhcCCCHHHHHHH
Q 004132 148 EENSSRPIF-EITSHTLSKLLTALNEC--TEWGQVFILDALSRYKAADA------REAENIVERVTPRLQHANCAVVLSA 218 (772)
Q Consensus 148 ~~~~~~~~~-~l~~~~~~~Ll~~L~~~--~ew~qv~iL~~L~~~~~~~~------~e~~~il~~v~~~L~~~n~aVv~ea 218 (772)
++...+..+ ......+..++..+.+. ++=.+...++++..+...-. .....+++.+...+.+.+..|...+
T Consensus 158 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~ 237 (462)
T 1ibr_B 158 CQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAA 237 (462)
T ss_dssp HHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 876422222 22344556666667666 55567777777765321111 1112356666667778888999999
Q ss_pred HHHHHHhhhhcCChHHHHHHHH-hcccchhhcc-CCchhHHHHHHHHHHHHHhhC---------------------hhhh
Q 004132 219 VKMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIVQRR---------------------PTIL 275 (772)
Q Consensus 219 ik~i~~~~~~i~~~~~~~~l~~-~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~---------------------p~~~ 275 (772)
++++..+.... ++.+..... .+.+.+...+ ..++++|..+++.+..++... ..++
T Consensus 238 ~~~l~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (462)
T 1ibr_B 238 LQNLVKIMSLY--YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA 315 (462)
T ss_dssp HHHHHHHHHHC--GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHH
Confidence 99887765322 111111111 2222233333 467899999999888877542 1122
Q ss_pred hhhcc-----eeeec-------cCCcHhHHHHHHHHHHHhcc---cccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 004132 276 AHEIK-----VFFCK-------YNDPIYVKMEKLEIMIKLAS---DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAI 340 (772)
Q Consensus 276 ~~~~~-----if~~~-------~~d~~~Ik~~kL~lL~~L~n---~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~ 340 (772)
.++.. .+.++ .+|+..+|+.+.+.|..++. +.-+..++.-+.+++.+.+...|..++.++|.++.
T Consensus 316 ~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 22211 11112 23346799999888888765 34455667777777888888999999999999986
Q ss_pred hhh-----hhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhC
Q 004132 341 KLE-----RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRY 379 (772)
Q Consensus 341 k~~-----~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~ 379 (772)
... +.....+..++.++......|+..+...+.++....
T Consensus 396 ~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 396 GPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp SSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 432 223457788888888777788888888777776543
No 40
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.18 E-value=6.8e-10 Score=111.26 Aligned_cols=185 Identities=23% Similarity=0.261 Sum_probs=143.2
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHH
Q 004132 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (772)
Q Consensus 48 iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~ 127 (772)
+..+.+.|+|+|+.+|..|++.|+.++.++..+. +.+++.|+++.||..|+.++.++.. + +.++.|..
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~----L~~~l~~~~~~vr~~a~~aL~~~~~--~------~~~~~L~~ 88 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP----LIKALKDEDAWVRRAAADALGQIGD--E------RAVEPLIK 88 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HHHHTTCSCHHHHHHHHHHHHHHCC--G------GGHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHH----HHHHHcCCCHHHHHHHHHHHHhhCC--H------HHHHHHHH
Confidence 4778888999999999999999999998766655 7788899999999999999998752 2 35788899
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhh
Q 004132 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL 207 (772)
Q Consensus 128 lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L 207 (772)
+|.|.|+.|...|+.+|..+... ..+..|+..+.+.+++.+...+..|..+... ..++.+...+
T Consensus 89 ~l~~~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l 152 (211)
T 3ltm_A 89 ALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIKAL 152 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------GGHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHH
Confidence 99999999999999999888532 1366777778889999999999999888642 2456677788
Q ss_pred cCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhCh
Q 004132 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRP 272 (772)
Q Consensus 208 ~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p 272 (772)
++.++.|...|+.++..+ .++..+. .|..++ ..++.+|..+.+.|..+....+
T Consensus 153 ~d~~~~vr~~a~~aL~~~----~~~~~~~--------~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 153 KDEDGWVRQSAADALGEI----GGERVRA--------AMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp TCSSHHHHHHHHHHHHHH----CSHHHHH--------HHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred cCCCHHHHHHHHHHHHHh----CchhHHH--------HHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 899999999999999874 3444333 344555 4678899999998887765543
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.16 E-value=1.8e-08 Score=115.81 Aligned_cols=328 Identities=20% Similarity=0.156 Sum_probs=215.8
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCC----Ch---hhhHHH-HHHHHHhhhC-CCChHHHHHHHHHHHHHHhhccc---
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRTMGCI----RV---DKITEY-LCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAE--- 114 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrtl~~I----~~---~ei~~~-l~~~v~~~L~-d~~pyVRK~Aa~~l~kl~~~~p~--- 114 (772)
.+..+.+.+++.|+..+-.|++.+..+ .. .++++. ++|.+.++|. +.++.++..|+.|+..+...+++
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 346677888888888877776655432 22 233332 5788889996 56799999999999999876654
Q ss_pred cccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCccc-ccHHHHHHHHHHhhcCC-----hhHHHHHHHHHhcc
Q 004132 115 LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNECT-----EWGQVFILDALSRY 188 (772)
Q Consensus 115 ~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~-l~~~~~~~Ll~~L~~~~-----ew~qv~iL~~L~~~ 188 (772)
.+.+.|.++.|..+|.+.++.|...|+.+|..|+..++...-. +..+.+..|+..|...+ ...+..+...|..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 3445688999999999999999999999999998654221110 11223555666665432 22233334444433
Q ss_pred cc-----CCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH-HhcccchhhccC-CchhHHHHHH
Q 004132 189 KA-----ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVAL 261 (772)
Q Consensus 189 ~~-----~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~-~~~~~~L~~Lls-~~~~iryvaL 261 (772)
.. ........+++.+..++++.++.|...|+.++.++... ..+....+. ..+.+.|+.++. .++.++..++
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~ 314 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh--hhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence 22 12344567788888899999999999999999876532 333333222 245677888884 6889999999
Q ss_pred HHHHHHHhhChhh----hhhh-cce-eeeccCCcHhHHHHHHHHHHHhcc--cccHHH-----HHHHHHHhhhhccHHHH
Q 004132 262 RNINLIVQRRPTI----LAHE-IKV-FFCKYNDPIYVKMEKLEIMIKLAS--DRNIDQ-----VLLEFKEYATEVDVDFV 328 (772)
Q Consensus 262 ~~l~~i~~~~p~~----~~~~-~~i-f~~~~~d~~~Ik~~kL~lL~~L~n--~~Nv~~-----Il~EL~~y~~~~d~~~~ 328 (772)
++|..|+...+.. +... +.. ..++.+.+..||..+.-.|..|+. +..... ++.-|...+.+.+.+++
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 9999998655432 1111 222 234566678899999999998864 333333 45556777788888899
Q ss_pred HHHHHHHHHHHHhhhhh------HHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 004132 329 RKAVRAIGRCAIKLERA------AERCISVLLELIKIKVNYVVQEAIIVIKDIF 376 (772)
Q Consensus 329 ~~~v~aIg~la~k~~~~------~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~ 376 (772)
++++.+|+.++..-... ..-++..|+++|......+..-++..+.+|+
T Consensus 395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999998887643211 1123666777776666555555555555554
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.14 E-value=1.5e-09 Score=107.93 Aligned_cols=181 Identities=23% Similarity=0.271 Sum_probs=132.8
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHH
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLK 126 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~ 126 (772)
....+.+.|+|+|+.+|..|++.|+.++.++..+. +.++|.|+++.||..|+.++.++. ++ ..++.|.
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~----L~~~l~~~~~~vr~~a~~~L~~~~--~~------~~~~~L~ 82 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP----LIKALKDEDAWVRRAAADALGQIG--DE------RAVEPLI 82 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHH----HHHHTTCSSHHHHHHHHHHHHHHC--CG------GGHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHH----HHHHHcCCCHHHHHHHHHHHHhhC--CH------HHHHHHH
Confidence 45678888899999999999999998887665544 667788889999999998888874 22 2567888
Q ss_pred HhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHh
Q 004132 127 DLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPR 206 (772)
Q Consensus 127 ~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~ 206 (772)
.+|.|.|+.|...|+.+|..+... ..+..|+..+.+.+++.+...++.|..+... ..++.+...
T Consensus 83 ~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~ 146 (201)
T 3ltj_A 83 KALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------RAVEPLIKA 146 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG------GGHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH------HHHHHHHHH
Confidence 888888999999888888877432 1355666777788888888888888877532 235566677
Q ss_pred hcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHH
Q 004132 207 LQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLI 267 (772)
Q Consensus 207 L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i 267 (772)
+++.++.|...|+.++..+ .+++.+. .|..++ +.++.+|..+.+.|..+
T Consensus 147 l~d~~~~vr~~A~~aL~~~----~~~~~~~--------~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 147 LKDEDGWVRQSAADALGEI----GGERVRA--------AMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHH----CSHHHHH--------HHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHh----CchhHHH--------HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7888888888888888764 3444333 234455 35777888887777654
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.07 E-value=4.9e-09 Score=104.07 Aligned_cols=184 Identities=22% Similarity=0.298 Sum_probs=150.7
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHH
Q 004132 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQ 87 (772)
Q Consensus 8 s~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~ 87 (772)
...+..+++++.+++...|+.+--.+..+... + ++..+.+-++|+|+.+|..|+++|+.++.++..+. +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~--~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~----L~ 82 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--R----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LI 82 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--G----GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HH
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh--h----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HH
Confidence 45688899999999999999988888877652 2 34677788889999999999999999998876655 77
Q ss_pred hhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHH
Q 004132 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLL 167 (772)
Q Consensus 88 ~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll 167 (772)
++|.|+++.||..|+.++.++.. + +.++.|..+|.|.|+.|+..|+.+|..+... ..+..|+
T Consensus 83 ~~l~d~~~~vr~~a~~aL~~~~~--~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~ 144 (201)
T 3ltj_A 83 KALKDEDGWVRQSAAVALGQIGD--E------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE----------RAVEPLI 144 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC--G------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG----------GGHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc--H------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH----------HHHHHHH
Confidence 88999999999999999999752 2 3578889999999999999999999988532 2366777
Q ss_pred HHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHh
Q 004132 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (772)
Q Consensus 168 ~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (772)
..+.+.+++.+...++.|..+.. ...++.+...+++.++.|...|++++-.+
T Consensus 145 ~~l~d~~~~vr~~A~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 145 KALKDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 78888999999999999998853 23455666677788899999998887753
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.07 E-value=4.2e-09 Score=105.43 Aligned_cols=184 Identities=22% Similarity=0.297 Sum_probs=150.5
Q ss_pred cchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHH
Q 004132 8 SSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQ 87 (772)
Q Consensus 8 s~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~ 87 (772)
.......++++.+++...|+.+--.+..+.. ++ ++..+.+-+.|+++.+|..|+++|+.++.++..+. +.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~----L~ 87 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--ER----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LI 87 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHH----HH
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--cc----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HH
Confidence 4457788889999999999888888877765 22 34677788889999999999999999998776655 77
Q ss_pred hhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHH
Q 004132 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLL 167 (772)
Q Consensus 88 ~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll 167 (772)
++|.|+++.||..|+.++.++.. + +.++.|..+|.|.|+.|...|+.+|..+... ..+..|+
T Consensus 88 ~~l~~~~~~vr~~a~~aL~~~~~--~------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~ 149 (211)
T 3ltm_A 88 KALKDEDGWVRQSAAVALGQIGD--E------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE----------RAVEPLI 149 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC--G------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc--H------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH----------HHHHHHH
Confidence 88999999999999999998852 2 3578899999999999999999999988532 1356677
Q ss_pred HHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHh
Q 004132 168 TALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (772)
Q Consensus 168 ~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (772)
..+.+.+++.+...++.|..+.. ...++.+...+++.++.|...|+.++..+
T Consensus 150 ~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 150 KALKDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred HHHcCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 77889999999999999998863 24456667777888999999999998764
No 45
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.00 E-value=1.8e-08 Score=102.84 Aligned_cols=224 Identities=21% Similarity=0.177 Sum_probs=169.4
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHH-----HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---cc
Q 004132 48 VNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VE 117 (772)
Q Consensus 48 iNtl~kDl~~~np~iralALrtl~~I~--~~ei~~-----~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~---~~ 117 (772)
+..+.+-++++++.+|..|+++|+++. .++... ..++.+.++|.+.++.||..|+.++..+...+++. +.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 567788888889999999999998874 222222 35788999999999999999999999998654542 22
Q ss_pred ccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCccc-ccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHH
Q 004132 118 DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREA 196 (772)
Q Consensus 118 ~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~-l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~ 196 (772)
+.+.++.|..+|.+.++.|+.+|+.+|..++..++...-. .....+..|++.+.+.++..+...+.+|..+...++...
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3467899999999999999999999999998543221111 112357788888888999999999999998876555432
Q ss_pred H-----HHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH-HhcccchhhccC-CchhHHHHHHHHHHHHHh
Q 004132 197 E-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQ 269 (772)
Q Consensus 197 ~-----~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~-~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~ 269 (772)
. .+++.+...+++.++.|...|+.++.++.. .+++..+.+. ..+.+.|+.++. .++++|..++..|..|..
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 2 356788889999999999999999998753 2344333332 245567778774 688999999999999988
Q ss_pred hChh
Q 004132 270 RRPT 273 (772)
Q Consensus 270 ~~p~ 273 (772)
..+.
T Consensus 242 ~~~~ 245 (252)
T 4hxt_A 242 GGWL 245 (252)
T ss_dssp TCBC
T ss_pred CCCc
Confidence 7654
No 46
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.91 E-value=1.4e-08 Score=104.26 Aligned_cols=220 Identities=17% Similarity=0.176 Sum_probs=167.9
Q ss_pred CccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHH--HH---HHHHHHhhcCCCCHHHHhHHHHHhcCCCh--hhh
Q 004132 6 DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLA--IL---AVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKI 78 (772)
Q Consensus 6 Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~--lL---~iNtl~kDl~~~np~iralALrtl~~I~~--~ei 78 (772)
+-...|..+++.+.++|.+.++-+--.+..++..+++.. +. ++..+.+-++++++.+|..|+++|+++.. ++.
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 445679999999999999999888888865554333221 11 45778889999999999999999999874 443
Q ss_pred HHH-----HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 004132 79 TEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 79 ~~~-----l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~ 150 (772)
.+. .++.+.++|.++++.||+.|+.++..+....+. .+.+.+.++.|.++|.+.++.|+..|+.+|..++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 333 578899999999999999999999999865443 233457889999999999999999999999999864
Q ss_pred CCCCccc-ccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHH-----HHHHHhHhhcCCCHHHHHHHHHHHHH
Q 004132 151 SSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVKMILQ 224 (772)
Q Consensus 151 ~~~~~~~-l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~-----il~~v~~~L~~~n~aVv~eaik~i~~ 224 (772)
++..... .....+..|++.+.+.++..+...+.+|..+...+++.... +++.+...+++.++.|..+|+.++.+
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3211101 11234677888888889999999999999887655544333 45667778888888998888888765
Q ss_pred h
Q 004132 225 Q 225 (772)
Q Consensus 225 ~ 225 (772)
+
T Consensus 249 l 249 (252)
T 4db8_A 249 L 249 (252)
T ss_dssp T
T ss_pred H
Confidence 3
No 47
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.90 E-value=5.1e-08 Score=99.36 Aligned_cols=218 Identities=20% Similarity=0.163 Sum_probs=171.2
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHH-----HHHHHHhhcCCCCHHHHhHHHHHhcCCCh--hhhHHH-
Q 004132 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIRV--DKITEY- 81 (772)
Q Consensus 10 lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL-----~iNtl~kDl~~~np~iralALrtl~~I~~--~ei~~~- 81 (772)
..+..++++.+++.+.++-+--.+.+++..+++.... ++..+.+-++++++.+|..|+++|+++.. ++..+.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3567889999999999999988999998887743322 56788899999999999999999999974 343332
Q ss_pred ----HHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC
Q 004132 82 ----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (772)
Q Consensus 82 ----l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~---~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~ 154 (772)
.++.+.+++.+.++.||..|+.++..+...+++. +.+.+.++.|.++|.+.++.|+..|+.+|..++...+..
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 4788999999999999999999999999765543 223478899999999999999999999999998643221
Q ss_pred c-ccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHH-----HHHHHhHhhcCCCHHHHHHHHHHHHHhhh
Q 004132 155 I-FEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-----IVERVTPRLQHANCAVVLSAVKMILQQME 227 (772)
Q Consensus 155 ~-~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~-----il~~v~~~L~~~n~aVv~eaik~i~~~~~ 227 (772)
. .-...+.+..|+..+.+.++..+...+.+|..+...++..... +++.+...+++.++.|..+|+.++.++..
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 1 1112345777888888889999999999999887655543332 46778888899999999999999887643
No 48
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.82 E-value=3.3e-08 Score=101.34 Aligned_cols=217 Identities=17% Similarity=0.135 Sum_probs=157.4
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCCh--hhhHH-----HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccc
Q 004132 49 NTFVKDSQDPNPLIRALAVRTMGCIRV--DKITE-----YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VED 118 (772)
Q Consensus 49 Ntl~kDl~~~np~iralALrtl~~I~~--~ei~~-----~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~---~~~ 118 (772)
+.+.+.|.++|+.+|..|+++|+++-. ++..+ ..++.+.++|.+.++.||..|+.++..+...+++. +.+
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 678899999999999999999866432 22222 35688999999999999999999999998755542 233
Q ss_pred cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC-cccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHH
Q 004132 119 RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE 197 (772)
Q Consensus 119 ~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~-~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~ 197 (772)
.+.++.|..+|.+.++.|+..|+.+|..++...... ..-.....+..|++.|.+.++-.+...+.+|..+...+++...
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 174 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 578899999999999999999999999997653211 0111223577788888888888899999999988765554433
Q ss_pred -----HHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHH-hcccchhhccC-CchhHHHHHHHHHHHH
Q 004132 198 -----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLI 267 (772)
Q Consensus 198 -----~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~-~~~~~L~~Lls-~~~~iryvaL~~l~~i 267 (772)
.+++.+...+++.++.|...|+.++.++.. .+++....+.. .+.+.|+.++. .++++|..|+..|..|
T Consensus 175 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 345678888999999999999999988642 24443333322 34555666663 5667777776666554
No 49
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.74 E-value=9.7e-08 Score=95.03 Aligned_cols=147 Identities=18% Similarity=0.171 Sum_probs=118.9
Q ss_pred CCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHH-----HHHHHHhhcCCCCHHHHhHHHHHhcCCC--hh
Q 004132 4 GKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQDPNPLIRALAVRTMGCIR--VD 76 (772)
Q Consensus 4 G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL-----~iNtl~kDl~~~np~iralALrtl~~I~--~~ 76 (772)
|++-...++-+++++.++|.+.++-+...+.+++..+++.... ++..+.+-+.++++.+|..|+++|+++. .+
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 5677778889999999999999999999999999777664322 4677888999999999999999999986 34
Q ss_pred hhHHH-----HHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004132 77 KITEY-----LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIE 148 (772)
Q Consensus 77 ei~~~-----l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~---~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~ 148 (772)
+.... .++.+.++|.+.++.||+.|+.++..+...+++. +.+.+.++.|.++|.+.++.|...|+.+|..++
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 43333 4688999999999999999999999998766543 224578999999999999999999999999998
Q ss_pred hh
Q 004132 149 EN 150 (772)
Q Consensus 149 ~~ 150 (772)
..
T Consensus 167 ~~ 168 (210)
T 4db6_A 167 SG 168 (210)
T ss_dssp TS
T ss_pred cC
Confidence 64
No 50
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.71 E-value=3.1e-07 Score=99.30 Aligned_cols=263 Identities=15% Similarity=0.192 Sum_probs=125.2
Q ss_pred HHhhcCCCCHHHHh---HHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHH
Q 004132 51 FVKDSQDPNPLIRA---LAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (772)
Q Consensus 51 l~kDl~~~np~ira---lALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~ 127 (772)
+.|-++++|...|- +++..++.. .++++ -++..+++=++|++||+|--|+-+++++- .|++++. +.+.+++
T Consensus 73 v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~--~~~m~~~--l~~~lk~ 146 (355)
T 3tjz_B 73 MTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQIT--DSTMLQA--IERYMKQ 146 (355)
T ss_dssp HHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHC--CTTTHHH--HHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCC--CHHHHHH--HHHHHHH
Confidence 35666777766553 455555555 34444 66777777777777777777777777774 6676664 6677777
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhh
Q 004132 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL 207 (772)
Q Consensus 128 lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L 207 (772)
+|.|+||.|..+|+.+...+... +++..+.+++.+...+
T Consensus 147 ~L~d~~pyVRk~A~l~~~kL~~~-----------------------------------------~pe~v~~~~~~l~~ll 185 (355)
T 3tjz_B 147 AIVDKVPSVSSSALVSSLHLLKC-----------------------------------------SFDVVKRWVNEAQEAA 185 (355)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTT-----------------------------------------CHHHHHTTHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHHhcc-----------------------------------------CHHHHHHHHHHHHHHh
Confidence 77777777777777666554432 2333333445555667
Q ss_pred cCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCCchhHHHHHHHHHHHHHhhC-hhhhhhhcce-eeec
Q 004132 208 QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRR-PTILAHEIKV-FFCK 285 (772)
Q Consensus 208 ~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~-p~~~~~~~~i-f~~~ 285 (772)
.+.|+.|++.|+.++..+... +...+.. +++.+...--.+|-.+...+|.+..+...+ |..-.+.+.. ..|+
T Consensus 186 ~d~n~~V~~~Al~lL~ei~~~--d~~a~~k----Lv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L 259 (355)
T 3tjz_B 186 SSDNIMVQYHALGLLYHVRKN--DRLAVSK----MISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCL 259 (355)
T ss_dssp TCSSHHHHHHHHHHHHHHHTT--CHHHHHH----HHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCC
T ss_pred cCCCccHHHHHHHHHHHHHhh--chHHHHH----HHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 778888888888877765321 3322222 221111110013333334455555555444 3332333332 3456
Q ss_pred cCCcHhHHHHHHHHHHHhccccc--HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccch
Q 004132 286 YNDPIYVKMEKLEIMIKLASDRN--IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNY 363 (772)
Q Consensus 286 ~~d~~~Ik~~kL~lL~~L~n~~N--v~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~ 363 (772)
.+-...|-.++...++.+.+... ....+.-|.-|+.+.|..++=-+++.|..++.+.|.....|-..+.+++.+.+.-
T Consensus 260 ~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~s 339 (355)
T 3tjz_B 260 RNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRS 339 (355)
T ss_dssp CCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------
T ss_pred cCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHh
Confidence 66667788888888777754111 1122333445666777777777888888888888877777877777777766554
Q ss_pred hHH
Q 004132 364 VVQ 366 (772)
Q Consensus 364 v~~ 366 (772)
+..
T Consensus 340 I~t 342 (355)
T 3tjz_B 340 IAT 342 (355)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 51
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.67 E-value=3.4e-07 Score=93.85 Aligned_cols=197 Identities=17% Similarity=0.208 Sum_probs=144.1
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc--cchHHHHHHhhc-CCChhHHHHHHHHHHHHHhhCCCCcc
Q 004132 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED--RGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIF 156 (772)
Q Consensus 80 ~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~~~~L~~lL~-D~d~~Vv~~av~aL~eI~~~~~~~~~ 156 (772)
..+-+.+.+.+.|+++.+|+.|+.++.++...+|+.... .++.+.|..+|. |.|+.|+..|+.++..++..-++...
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 334445778889999999999999999999876654321 246788888995 99999999999999999865433222
Q ss_pred cccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChH-HH
Q 004132 157 EITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTD-VV 235 (772)
Q Consensus 157 ~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~-~~ 235 (772)
......+..|+..+.+..+-.+.....+|..+..... ...+++.+...++|.|+.|..+++..+..++.... ++ ..
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~-~~~~~ 170 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ-PTALN 170 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC-GGGCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC-CCCcc
Confidence 3344567788888888888777777666665543222 45788999999999999999999999988654321 21 11
Q ss_pred HHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhCh-hhhhhhc
Q 004132 236 RNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP-TILAHEI 279 (772)
Q Consensus 236 ~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p-~~~~~~~ 279 (772)
......+.+.|..+++ +++++|-.|..++..+...-+ +.+.+++
T Consensus 171 ~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 171 KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 2233457777788885 689999999999999886543 3455554
No 52
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.63 E-value=2.3e-06 Score=96.39 Aligned_cols=166 Identities=13% Similarity=0.083 Sum_probs=112.2
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccc-
Q 004132 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI- 158 (772)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l- 158 (772)
++.+.++|.+.++.+|..|+.++.++...+++ .+...|.++.|..+|.+.++.+...|+.+|..|...++.....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 46678888899999999999999998765554 34456889999999999999999999999999986422211111
Q ss_pred cHHHHHHHHHHhh-cCChhHHHHHHHHHhccccC--CHH-HHHHHHHHHhHhhc--------C--------CCHHHHHHH
Q 004132 159 TSHTLSKLLTALN-ECTEWGQVFILDALSRYKAA--DAR-EAENIVERVTPRLQ--------H--------ANCAVVLSA 218 (772)
Q Consensus 159 ~~~~~~~Ll~~L~-~~~ew~qv~iL~~L~~~~~~--~~~-e~~~il~~v~~~L~--------~--------~n~aVv~ea 218 (772)
....+..|++.|. ..++-.|.....+|..+... ... -....++.+..++. + ....|+..|
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a 163 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence 1234667777777 55676776666666655432 211 11255666666662 1 356788899
Q ss_pred HHHHHHhhhhcCChHHHHHHHH--hcccchhhccC
Q 004132 219 VKMILQQMELITSTDVVRNLCK--KMAPPLVTLLS 251 (772)
Q Consensus 219 ik~i~~~~~~i~~~~~~~~l~~--~~~~~L~~Lls 251 (772)
+.++.++.. +++..+.+.. .++++|+.++.
T Consensus 164 ~~aL~nLs~---~~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 164 TGCLRNLSS---ADAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp HHHHHHHTT---SHHHHHHHTTSTTHHHHHHHHHH
T ss_pred HHHHHHHcc---CHHHHHHHHHcCCCHHHHHHHHH
Confidence 999988642 3444444432 46677887774
No 53
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.57 E-value=0.00024 Score=87.36 Aligned_cols=412 Identities=9% Similarity=0.039 Sum_probs=221.0
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC-------------ChhhhH
Q 004132 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI-------------RVDKIT 79 (772)
Q Consensus 13 ~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I-------------~~~ei~ 79 (772)
+++....++|...| +--++..+ +.+|+......+.+... +.++.+|-+|.-.+-+. -.++--
T Consensus 9 ~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~~--~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k 83 (960)
T 1wa5_C 9 KFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAST--NLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNV 83 (960)
T ss_dssp HHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHCT--TSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHH
T ss_pred HHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHH
Confidence 34444445555544 77677666 67888776666666532 34678898887766542 123444
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh-ccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccc
Q 004132 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI 158 (772)
Q Consensus 80 ~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~-~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l 158 (772)
+.+-..+..++.+.++.||++++.++.++.+. .|+.-+ ++++.|..++.+.|+..+.+++.++.+|++.... .+.-
T Consensus 84 ~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp--~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~-~~~~ 160 (960)
T 1wa5_C 84 ELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWP--TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRP-LFRS 160 (960)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTT-SCCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchh--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH-hhcC
Confidence 55566666777777799999999999999976 454333 3778888888888888999999999999874321 0110
Q ss_pred --cHHHHHHHHHHhhcCChhHHH--HHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHH
Q 004132 159 --TSHTLSKLLTALNECTEWGQV--FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV 234 (772)
Q Consensus 159 --~~~~~~~Ll~~L~~~~ew~qv--~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~ 234 (772)
....+..++... ..+..++ .+...+..-.. +.......+ .++..++|++..+.. ..-++.
T Consensus 161 ~~~~~~l~~~l~~~--~~~ll~~~~~~~~~l~~~~~-~~~~~~~~~------------~~~~~~~k~~~~l~~-~~~~~~ 224 (960)
T 1wa5_C 161 DELFLEIKLVLDVF--TAPFLNLLKTVDEQITANEN-NKASLNILF------------DVLLVLIKLYYDFNC-QDIPEF 224 (960)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTCCC---CHHHHHHH------------HHHHHHHHHHHHHHS-SCCCHH
T ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC-CHHHHHHHH------------HHHHHHHHHHHHHhh-ccchHH
Confidence 001111111110 0111110 01111111000 000000000 112223333332110 011111
Q ss_pred HHHHHHhcccchhhcc-------CCc---------hhHHHHHHHHHHHHHhhChhhhhhhccee-----ee-----ccCC
Q 004132 235 VRNLCKKMAPPLVTLL-------SAE---------PEIQYVALRNINLIVQRRPTILAHEIKVF-----FC-----KYND 288 (772)
Q Consensus 235 ~~~l~~~~~~~L~~Ll-------s~~---------~~iryvaL~~l~~i~~~~p~~~~~~~~if-----~~-----~~~d 288 (772)
...-.....+.+..++ ..+ ..+|--+++.+..+..++++.|.+|+..| .. ....
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~ 304 (960)
T 1wa5_C 225 FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPK 304 (960)
T ss_dssp HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 1110011111111111 111 13677788999999999998887765322 00 1133
Q ss_pred cHhHHHHHHHHHHHhcccc----------cHHHHH-HHHHHhhh----h-----cc-H-------------HHHHHHHHH
Q 004132 289 PIYVKMEKLEIMIKLASDR----------NIDQVL-LEFKEYAT----E-----VD-V-------------DFVRKAVRA 334 (772)
Q Consensus 289 ~~~Ik~~kL~lL~~L~n~~----------Nv~~Il-~EL~~y~~----~-----~d-~-------------~~~~~~v~a 334 (772)
+..++..+++.+..++... .+..|+ .-+..++. + .| . ..|+.+...
T Consensus 305 ~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~ 384 (960)
T 1wa5_C 305 YDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDF 384 (960)
T ss_dssp SHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHH
Confidence 4678999999999887542 233344 12222321 1 01 1 235556667
Q ss_pred HHHHHHhhhhhHHHHHHHHHHH----Hhh-----ccc-hhHHHHHHHHHHHHHhC-----c--------ccHHHHHHHHH
Q 004132 335 IGRCAIKLERAAERCISVLLEL----IKI-----KVN-YVVQEAIIVIKDIFRRY-----P--------NTYESIIATLC 391 (772)
Q Consensus 335 Ig~la~k~~~~~~~~vd~Ll~l----l~~-----~~~-~v~~e~i~~l~~i~~~~-----p--------~~~~~ii~~L~ 391 (772)
+..++..++ +.++..++.+ +.. ..+ ...+.++..+..+..+. + +.-......+.
T Consensus 385 L~~l~~~~~---~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~ 461 (960)
T 1wa5_C 385 LKELKEKNE---VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIA 461 (960)
T ss_dssp HHHHHHHCH---HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTH
T ss_pred HHHHHHHcc---hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhH
Confidence 777887765 2344444443 331 122 23334455555554321 1 12122233344
Q ss_pred HhcccC--ChHHHHHHHHHHHhhhccccCC--HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhh
Q 004132 392 ESLDTL--DEPEAKASMIWIIGEYAERIDN--ADELLESFLESFPEEPAQVQLQLLTATVKLFL 451 (772)
Q Consensus 392 ~~l~~~--~~p~a~~~~iwilGEy~~~i~~--~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~ 451 (772)
..+.+- ..|-.|..++|++|.|++.+.. ...++..+++.+.+.+..||..+-.|+..+..
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 444442 2788899999999999987631 34566677778888889999999999998765
No 54
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.53 E-value=3.8e-05 Score=94.32 Aligned_cols=460 Identities=12% Similarity=0.112 Sum_probs=231.0
Q ss_pred HHHHHh-hcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhhhHHHHH
Q 004132 12 TDVVNC-MQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKITEYLC 83 (772)
Q Consensus 12 ~~vi~l-~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~-------~~ei~~~l~ 83 (772)
-.++.. ..+.|.+.|+-+.-++..+ +.+|+....+..-+. .+.++.+|-.|+.+|-+.. .++-.+.+-
T Consensus 27 ~~~l~~l~~~~~~~~r~~A~~~L~~~-~~~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir 102 (963)
T 2x19_B 27 EKALHQLYYDPNIENKNLAQKWLMQA-QVSPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLK 102 (963)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHH-HHSTTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHH-hcCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHH
Confidence 344443 5568888999999888775 456774444443333 3678999999988887532 122233333
Q ss_pred HHHHhhhCC---CChHHHHHHHHHHHHHHhhc-cccccccchHHHHHHhhcC-----CChhHHHHHHHHHHHHHhhC--C
Q 004132 84 DPLQRCLKD---DDPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISD-----NNPMVVANAVAALAEIEENS--S 152 (772)
Q Consensus 84 ~~v~~~L~d---~~pyVRK~Aa~~l~kl~~~~-p~~~~~~~~~~~L~~lL~D-----~d~~Vv~~av~aL~eI~~~~--~ 152 (772)
..|.+++.+ ..++||.+.+.++..+.+.+ |+.-+ ++++.|..++.. .++.....++..|..+++.- .
T Consensus 103 ~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp--~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~ 180 (963)
T 2x19_B 103 AQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP--CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTS 180 (963)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccc--hHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcc
Confidence 333333332 46999999999999998763 55443 367777777765 25556666666666665321 0
Q ss_pred ----------CCcccccHHHHHHHHH-HhhcC--ChhHHHHHHHHHhccccC--CHHHHHHHHHHHhHhhcCCCHHHHHH
Q 004132 153 ----------RPIFEITSHTLSKLLT-ALNEC--TEWGQVFILDALSRYKAA--DAREAENIVERVTPRLQHANCAVVLS 217 (772)
Q Consensus 153 ----------~~~~~l~~~~~~~Ll~-~L~~~--~ew~qv~iL~~L~~~~~~--~~~e~~~il~~v~~~L~~~n~aVv~e 217 (772)
...+.-..+.+..++. .+.+. +.|....+|+++..+.+- .......+++.+...+. ++.+...
T Consensus 181 ~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~~ 258 (963)
T 2x19_B 181 RLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFDS 258 (963)
T ss_dssp CC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHHH
Confidence 0001111122222222 22222 347888888888654321 11112445565555553 4455666
Q ss_pred HHHHHHHhhhhcCC---hHHHHHHHHhcccchhhc----cCCchhHHHHHHHHHHHHHhhChhhhh------hh----cc
Q 004132 218 AVKMILQQMELITS---TDVVRNLCKKMAPPLVTL----LSAEPEIQYVALRNINLIVQRRPTILA------HE----IK 280 (772)
Q Consensus 218 aik~i~~~~~~i~~---~~~~~~l~~~~~~~L~~L----ls~~~~iryvaL~~l~~i~~~~p~~~~------~~----~~ 280 (772)
|+.++..+...-.. ...+..+...+...+-.+ -..+.+..--..+.+..++..++..+. ++ +.
T Consensus 259 a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~ 338 (963)
T 2x19_B 259 SVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVN 338 (963)
T ss_dssp HHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHH
Confidence 66776665431111 122222222222111001 123333222233555555554444332 11 11
Q ss_pred e-eeecc-----CCcHhHHHHHHHHHHHhccc-----------------ccHHHHHHHHHHhhh---hc-----c----H
Q 004132 281 V-FFCKY-----NDPIYVKMEKLEIMIKLASD-----------------RNIDQVLLEFKEYAT---EV-----D----V 325 (772)
Q Consensus 281 i-f~~~~-----~d~~~Ik~~kL~lL~~L~n~-----------------~Nv~~Il~EL~~y~~---~~-----d----~ 325 (772)
. +.|.. ..+..+...+++....++.+ .-+..++..+...+. +. | .
T Consensus 339 ~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~ 418 (963)
T 2x19_B 339 MIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKE 418 (963)
T ss_dssp HHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHH
T ss_pred HHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHH
Confidence 1 12222 12333566777777776652 111122222222221 10 0 1
Q ss_pred ---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc-------cch-hHHHHHHHHHHHHHhCcccHHHHHHHHHHhc
Q 004132 326 ---DFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK-------VNY-VVQEAIIVIKDIFRRYPNTYESIIATLCESL 394 (772)
Q Consensus 326 ---~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~-------~~~-v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l 394 (772)
++|+.+...+..++...+ +.++..+++.+... .+. ..+.++..+..+.....+.....+..+.+.+
T Consensus 419 ~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l 495 (963)
T 2x19_B 419 QFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI 495 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH
Confidence 234455555555665443 22444444443221 122 3344455666665543321112333444444
Q ss_pred ccC--ChHHHHHHHHHHHhhhccccC-CH---HHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC---ChHHHHHHH
Q 004132 395 DTL--DEPEAKASMIWIIGEYAERID-NA---DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE---GPQQMIQVV 465 (772)
Q Consensus 395 ~~~--~~p~a~~~~iwilGEy~~~i~-~~---~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~---~~~~~v~~v 465 (772)
..+ +.|.++..++|++|.|++.+. ++ +.++..++..+.+ +.|+..+..|+.++....+.. -..+++..+
T Consensus 496 ~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l 573 (963)
T 2x19_B 496 PRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVS 573 (963)
T ss_dssp GGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 332 367789999999999998654 22 2345566666643 789999999999987654321 145566655
Q ss_pred HHhhhcCCCChHHHhhHHH
Q 004132 466 LNNATVETDNPDLRDRAYI 484 (772)
Q Consensus 466 l~~~~~~s~~~dvrdRA~~ 484 (772)
.+.......+.+.|..+++
T Consensus 574 ~~~l~~~~~~~~~~~~~~e 592 (963)
T 2x19_B 574 QDVLMKQIHKTSQCMWLMQ 592 (963)
T ss_dssp HHHHHTTCSCHHHHHHHHH
T ss_pred HHHhccCCCChHHHHHHHH
Confidence 5543221223445444433
No 55
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.52 E-value=2.2e-05 Score=90.36 Aligned_cols=355 Identities=13% Similarity=0.091 Sum_probs=188.6
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhh-CCCCccc
Q 004132 82 LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN-SSRPIFE 157 (772)
Q Consensus 82 l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~-~~~~~~~ 157 (772)
-++.+.++|.+.++-++..|+.++.++...+++ .+...|-++.|..+|...++.|...|+.+|..|+.. +......
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 356688889999999999999999988865443 344457889999999999999999999999999863 2111111
Q ss_pred -ccHHHHHHHHHHhhc-CChhHHHHHHHHHhccccCC--HHH-HHHHHHHHhHhh-----------------c-CCCHHH
Q 004132 158 -ITSHTLSKLLTALNE-CTEWGQVFILDALSRYKAAD--ARE-AENIVERVTPRL-----------------Q-HANCAV 214 (772)
Q Consensus 158 -l~~~~~~~Ll~~L~~-~~ew~qv~iL~~L~~~~~~~--~~e-~~~il~~v~~~L-----------------~-~~n~aV 214 (772)
.....+..|+..|.. .++-.|.....+|..+...+ ... ....+..+..++ + ..+..|
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V 208 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHH
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHH
Confidence 122356677777765 35555666555555443221 111 112233333322 1 225689
Q ss_pred HHHHHHHHHHhhhhcCChHHHHHHHH--hcccchhhccC-------CchhHHHHHHHHHHHHHhhC----hhhhhhhcce
Q 004132 215 VLSAVKMILQQMELITSTDVVRNLCK--KMAPPLVTLLS-------AEPEIQYVALRNINLIVQRR----PTILAHEIKV 281 (772)
Q Consensus 215 v~eaik~i~~~~~~i~~~~~~~~l~~--~~~~~L~~Lls-------~~~~iryvaL~~l~~i~~~~----p~~~~~~~~i 281 (772)
+..|+.++.++.- .+++..+.+.. -++++|+.++. .+..++--++..|..+.... |.. ..+...
T Consensus 209 ~~nAa~~L~NLs~--~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~-~~~~~~ 285 (584)
T 3l6x_A 209 LTNTAGCLRNVSS--ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQA-ERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHTS--SCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTC-CC----
T ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccch-hhhhhh
Confidence 9999999988632 23333333321 23456777663 23345555666666555331 110 000000
Q ss_pred eeeccCCcHhHHHHHHHHHHHhcccccH-----HHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHHh---hh----h--hH
Q 004132 282 FFCKYNDPIYVKMEKLEIMIKLASDRNI-----DQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIK---LE----R--AA 346 (772)
Q Consensus 282 f~~~~~d~~~Ik~~kL~lL~~L~n~~Nv-----~~Il~EL~~y~~~-~d~~~~~~~v~aIg~la~k---~~----~--~~ 346 (772)
..++...+ ...+...+ ..+++-|+..+.. .+.+.++.++.+|..++.- .+ . ..
T Consensus 286 ---~~~~~~~~---------~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 286 ---APNVANNT---------GTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ 353 (584)
T ss_dssp ----------------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS
T ss_pred ---cccccccc---------cccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 00000000 01111111 1333444444432 3466666677777666421 01 0 11
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcc---cHHHHHHHHHHhcccCC-------hHHHHHHHHHHHhhhccc
Q 004132 347 ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPN---TYESIIATLCESLDTLD-------EPEAKASMIWIIGEYAER 416 (772)
Q Consensus 347 ~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~---~~~~ii~~L~~~l~~~~-------~p~a~~~~iwilGEy~~~ 416 (772)
+..+..|++||......+...++..++++.+.... ....++..|++.|..-. ..++...++|.+|+-...
T Consensus 354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~ 433 (584)
T 3l6x_A 354 EKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE 433 (584)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC
Confidence 35677777777777777777777777776543221 24567777777775321 245666777777765321
Q ss_pred -cCCHH-----HHHHHHhhhCCC--CCHHHHHHHHHHHHHHhh
Q 004132 417 -IDNAD-----ELLESFLESFPE--EPAQVQLQLLTATVKLFL 451 (772)
Q Consensus 417 -i~~~~-----~~L~~l~~~f~~--e~~~vq~~lLta~~Kl~~ 451 (772)
-++.. ..+..+++-... .++.++..+-.++.-++.
T Consensus 434 ~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 434 NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 11111 122233322222 255566556666666654
No 56
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.50 E-value=4.2e-08 Score=90.82 Aligned_cols=117 Identities=19% Similarity=0.230 Sum_probs=89.8
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhh
Q 004132 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (772)
Q Consensus 11 f~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L 90 (772)
...+++++.+++...|+.+.-.+..+... . +..+.+-++|+|+.+|..|+++|+.++.++.+ +.+.+++
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~----~~L~~~L 82 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDE--A-----FEPLLESLSNEDWRIRGAAAWIIGNFQDERAV----EPLIKLL 82 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSST--T-----HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHH----HHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCch--H-----HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHH
Confidence 44566788888888887776666555433 1 37788888999999999999999999986654 4577788
Q ss_pred CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHH
Q 004132 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAE 146 (772)
Q Consensus 91 ~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~e 146 (772)
.|+++.||..|+.++.++. ++ +.++.|..+|+|.|+.|...|+.+|.+
T Consensus 83 ~d~~~~VR~~A~~aL~~~~--~~------~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIG--GE------RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHC--SH------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHHHhC--cH------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8999999999999999985 22 357888999999999999999888754
No 57
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.49 E-value=6.3e-05 Score=90.02 Aligned_cols=266 Identities=10% Similarity=0.121 Sum_probs=166.2
Q ss_pred HHHHhhcC---CCCHHHHhHHHHHhcCCChh---hhHHHHHHHHHhhhCCCC--------hHHHHHHHHHHHHHHhhccc
Q 004132 49 NTFVKDSQ---DPNPLIRALAVRTMGCIRVD---KITEYLCDPLQRCLKDDD--------PYVRKTAAICVAKLYDINAE 114 (772)
Q Consensus 49 Ntl~kDl~---~~np~iralALrtl~~I~~~---ei~~~l~~~v~~~L~d~~--------pyVRK~Aa~~l~kl~~~~p~ 114 (772)
..+.+-+- +.++++|+-|+-.+|-|..- +..++ +...|.+.+ +.||..|+++++.+|--.-+
T Consensus 395 ~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~l----L~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ 470 (963)
T 4ady_A 395 KVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDY----LKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN 470 (963)
T ss_dssp HHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHH----HHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHH----HHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC
Confidence 45566665 67899999999999887532 34444 445554444 89999999999998743221
Q ss_pred cccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhc--CChhHHHHHHHHHhccccCC
Q 004132 115 LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNE--CTEWGQVFILDALSRYKAAD 192 (772)
Q Consensus 115 ~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~--~~ew~qv~iL~~L~~~~~~~ 192 (772)
++..+.|..+|.|.+..+...|..+|.-|.-..+ +...+..|+..+.+ .+.|.+. +.-.|......+
T Consensus 471 ----eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg------n~~ai~~LL~~~~e~~~e~vrR~-aalgLGll~~g~ 539 (963)
T 4ady_A 471 ----IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG------KPEAIHDMFTYSQETQHGNITRG-LAVGLALINYGR 539 (963)
T ss_dssp ----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHCSCHHHHHH-HHHHHHHHTTTC
T ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC------CHHHHHHHHHHHhccCcHHHHHH-HHHHHHhhhCCC
Confidence 1367888999988887555566666665543333 23456666665532 2344443 333444333344
Q ss_pred HHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhC
Q 004132 193 AREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRR 271 (772)
Q Consensus 193 ~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~ 271 (772)
.+.+..+++.+. .+.++.|.+.++-++.-..--..+...++.+.. .+.+ .+..+|-.|.-.|..|....
T Consensus 540 ~e~~~~li~~L~---~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~-------~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 540 QELADDLITKML---ASDESLLRYGGAFTIALAYAGTGNNSAVKRLLH-------VAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp GGGGHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHH-------HHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred hHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH-------HhccCCcHHHHHHHHHHHHhhccCC
Confidence 555555555443 256888999888776422112345655554321 1222 45678888888888887666
Q ss_pred hhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHh
Q 004132 272 PTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIK 341 (772)
Q Consensus 272 p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k 341 (772)
|+...+.+..+ ..+.++.||+.+--.|-.++..+.-..+++-|..+..+.|.++++.++.++|.+...
T Consensus 610 ~e~v~rlv~~L--~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 610 YTTVPRIVQLL--SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp CSSHHHHTTTG--GGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 65433322211 123456788888888877766555577777777777788888888888888877754
No 58
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.49 E-value=1.9e-06 Score=85.49 Aligned_cols=187 Identities=19% Similarity=0.147 Sum_probs=134.5
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcc
Q 004132 80 EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (772)
Q Consensus 80 ~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~---~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~ 156 (772)
+...+.+.++|.++++.||..|+.++..+...+++. +.+.+.++.|..+|.+.++.|+..|+.+|..++..++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 445677899999999999999999999998665543 23346789999999999999999999999999754321111
Q ss_pred c-ccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHH-----HHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcC
Q 004132 157 E-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAE-----NIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (772)
Q Consensus 157 ~-l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~-----~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~ 230 (772)
. .....+..|++.|.+.++-.+...+.+|..+...+++... ..++.+...+++.+..|...|+.++.++.. .
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~--~ 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--G 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--S
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc--C
Confidence 1 1122467788888888988999999999988765554433 356778888999999999999999988643 1
Q ss_pred ChHHHHHHHH-hcccchhhccC-CchhHHHHHHHHHHHHH
Q 004132 231 STDVVRNLCK-KMAPPLVTLLS-AEPEIQYVALRNINLIV 268 (772)
Q Consensus 231 ~~~~~~~l~~-~~~~~L~~Lls-~~~~iryvaL~~l~~i~ 268 (772)
+++....+.. ...+.|+.++. .++++|..|+..|..+.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 2433333222 34556666664 56777777777776654
No 59
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.47 E-value=2.3e-06 Score=88.33 Aligned_cols=210 Identities=14% Similarity=0.201 Sum_probs=146.3
Q ss_pred HHHhhhCCCChHHHHHHHHHHHH-HHhhcccccc---c-cchHHHHHHhh-cCCChhHHHHHHHHHHHHHhhCC-CCcc-
Q 004132 85 PLQRCLKDDDPYVRKTAAICVAK-LYDINAELVE---D-RGFLESLKDLI-SDNNPMVVANAVAALAEIEENSS-RPIF- 156 (772)
Q Consensus 85 ~v~~~L~d~~pyVRK~Aa~~l~k-l~~~~p~~~~---~-~~~~~~L~~lL-~D~d~~Vv~~av~aL~eI~~~~~-~~~~- 156 (772)
.....+.++++.-||.|+.++.+ +..-+|++.. + .++++.|...| +|.|+.|+..|+.++..++..-. +.+-
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 45667799999999999999999 8877777662 1 35677888889 79999999999999999987554 3322
Q ss_pred cccHHHHHHHHHHhhcCChhHHHHH---HHHHhccccCCHHH--HHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCC
Q 004132 157 EITSHTLSKLLTALNECTEWGQVFI---LDALSRYKAADARE--AENIVERVTPRLQHANCAVVLSAVKMILQQMELITS 231 (772)
Q Consensus 157 ~l~~~~~~~Ll~~L~~~~ew~qv~i---L~~L~~~~~~~~~e--~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~ 231 (772)
......+..++..+.+..+=.+-.+ |+.+.......... ...+++.+...++|.|+.|..++++++..+....+.
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 3445567788888887665443333 33333322111111 457889999999999999999999999887654332
Q ss_pred -hHHHHHHH-HhcccchhhccC-CchhHHHHHHHHHHHHHhhCh-hhhhhhcceeeeccCCcHhHHHHHHHHHH
Q 004132 232 -TDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRP-TILAHEIKVFFCKYNDPIYVKMEKLEIMI 301 (772)
Q Consensus 232 -~~~~~~l~-~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p-~~~~~~~~if~~~~~d~~~Ik~~kL~lL~ 301 (772)
+..+.... ..+++.|..+++ +++++|-.|..++..+...-. ..+.+++.-+ |+ +|+.|++-.+
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L-----d~--~k~~ki~~~~ 246 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL-----DN--LKRKKIEETV 246 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS-----CH--HHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH-----hH--HHHHHHHHHH
Confidence 13333345 567777788885 688999999999998876532 3455554422 22 6777766543
No 60
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.46 E-value=8.7e-08 Score=88.64 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=93.3
Q ss_pred HHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHH
Q 004132 48 VNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD 127 (772)
Q Consensus 48 iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~ 127 (772)
++.+.+.|+|+|+.+|..|++.|+.++.+. .+.+.++|.|+++.||..|+.+++++.. + ..++.|..
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~------~a~~~L~~ 80 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD--E------RAVEPLIK 80 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--H------HHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--H------HHHHHHHH
Confidence 466788999999999999999999999875 3668899999999999999999998752 2 35788889
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhc
Q 004132 128 LISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSR 187 (772)
Q Consensus 128 lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~ 187 (772)
+|.|.|+.|+..|+.+|..+.. ...+..|+..+.+.++|.+......|.+
T Consensus 81 ~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 81 LLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 9999999999999999998852 2356777778888899998888888764
No 61
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.45 E-value=4.5e-06 Score=83.09 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=142.5
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC-cccccHHHHHHHHHHhhcCChhHHHHHHHHHhccc---cCCHHHH
Q 004132 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYK---AADAREA 196 (772)
Q Consensus 121 ~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~-~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~---~~~~~e~ 196 (772)
.+..|..+|.|+|+.|+.+|+.++.++.+.-++. ........+..+++.+.+.++=..++.+++|...- |-+++..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4678999999999999999999999998764332 12334556777777778889988888888887653 5577888
Q ss_pred HHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhC--hh
Q 004132 197 ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRR--PT 273 (772)
Q Consensus 197 ~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~--p~ 273 (772)
..+.+.+...+.+.|.....+|+.....+- +.+. .+++..-+.+|+ |+++.+|-+||+.+..|..+. |+
T Consensus 114 ~Kl~~aL~dlik~~~~il~~eaae~Lgklk--v~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 114 LKAAKTLVSLLESPDDMMRIETIDVLSKLQ--PLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHCC--BSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhCcCC--cccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 889999999999999999999999988752 2221 112333345666 579999999999999998764 55
Q ss_pred hhhhhcc-eeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHh
Q 004132 274 ILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEY 319 (772)
Q Consensus 274 ~~~~~~~-if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y 319 (772)
++..-.+ +=+.+.++|++++.++|+++..+.+..=.+.++.++..-
T Consensus 186 i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~ 232 (265)
T 3b2a_A 186 HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKI 232 (265)
T ss_dssp CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHH
Confidence 5544332 224567789999999999999998865555555555443
No 62
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.43 E-value=1.6e-05 Score=89.57 Aligned_cols=294 Identities=13% Similarity=0.136 Sum_probs=199.0
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHH-----HHHHHhhcC-CCCHHHHhHHHHHhcCCChh-----hh
Q 004132 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILA-----VNTFVKDSQ-DPNPLIRALAVRTMGCIRVD-----KI 78 (772)
Q Consensus 10 lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~-----iNtl~kDl~-~~np~iralALrtl~~I~~~-----ei 78 (772)
+.+..++++.+++...++-+--++.+++..+++.-..+ +..|.+-|. ++++.++..|..+|+++... .+
T Consensus 45 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i 124 (457)
T 1xm9_A 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124 (457)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHH
Confidence 56788899999999999999999999998777755545 456888888 88999999999888877532 24
Q ss_pred HHHHHHHHHhhhC--------C--------CChHHHHHHHHHHHHHHhhccc---ccccc-chHHHHHHhhcC------C
Q 004132 79 TEYLCDPLQRCLK--------D--------DDPYVRKTAAICVAKLYDINAE---LVEDR-GFLESLKDLISD------N 132 (772)
Q Consensus 79 ~~~l~~~v~~~L~--------d--------~~pyVRK~Aa~~l~kl~~~~p~---~~~~~-~~~~~L~~lL~D------~ 132 (772)
.+-.++++.++|. + .++.|++.|+.++..+... |+ .+.+. |.++.|..+|.+ .
T Consensus 125 ~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 203 (457)
T 1xm9_A 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRC 203 (457)
T ss_dssp HHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCT
T ss_pred HhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCC
Confidence 4467788888882 2 3567888999999998864 44 23333 788999888864 4
Q ss_pred ChhHHHHHHHHHHHHHhh--------------------------------------------------CCCC-cccccHH
Q 004132 133 NPMVVANAVAALAEIEEN--------------------------------------------------SSRP-IFEITSH 161 (772)
Q Consensus 133 d~~Vv~~av~aL~eI~~~--------------------------------------------------~~~~-~~~l~~~ 161 (772)
+..++-+|+.+|..++.. .+.. .+-+...
T Consensus 204 ~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (457)
T 1xm9_A 204 DDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283 (457)
T ss_dssp TCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHH
T ss_pred chHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcc
Confidence 556777777766655310 0000 0112345
Q ss_pred HHHHHHHHhhcC-ChhHHHHHHHHHhccccCCHH---HH-H------HHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcC
Q 004132 162 TLSKLLTALNEC-TEWGQVFILDALSRYKAADAR---EA-E------NIVERVTPRLQHANCAVVLSAVKMILQQMELIT 230 (772)
Q Consensus 162 ~~~~Ll~~L~~~-~ew~qv~iL~~L~~~~~~~~~---e~-~------~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~ 230 (772)
.++.|+..|... ++-.+......|..++..+.. .. + ..++.+..+|++.+..|+.+|+.++.++..
T Consensus 284 ~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~--- 360 (457)
T 1xm9_A 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--- 360 (457)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT---
T ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc---
Confidence 566677766554 567777777777777543211 11 1 345677889999999999999999988753
Q ss_pred ChHHHHHHHHhcccchhhccC-Cc------hhHHHHHHHHHHHHHhhChhhhhh---h--c-ceeeeccCC-cHhHHHHH
Q 004132 231 STDVVRNLCKKMAPPLVTLLS-AE------PEIQYVALRNINLIVQRRPTILAH---E--I-KVFFCKYND-PIYVKMEK 296 (772)
Q Consensus 231 ~~~~~~~l~~~~~~~L~~Lls-~~------~~iryvaL~~l~~i~~~~p~~~~~---~--~-~if~~~~~d-~~~Ik~~k 296 (772)
+++....+....+++|+.+|. .+ .++...++..|..|+...++.... . + ++..++.++ ...|++.|
T Consensus 361 ~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A 440 (457)
T 1xm9_A 361 HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440 (457)
T ss_dssp SGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHH
Confidence 333334445578899999985 32 368889999999998766543211 0 1 122333444 55677777
Q ss_pred HHHHHHhcccc
Q 004132 297 LEIMIKLASDR 307 (772)
Q Consensus 297 L~lL~~L~n~~ 307 (772)
..+|..+...+
T Consensus 441 ~~~L~~~~~~~ 451 (457)
T 1xm9_A 441 RLLLSDMWSSK 451 (457)
T ss_dssp HHHHHTTSSST
T ss_pred HHHHHHHHcch
Confidence 77777766543
No 63
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.33 E-value=7.4e-05 Score=86.01 Aligned_cols=303 Identities=15% Similarity=0.125 Sum_probs=199.6
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhccC-CCcHHHH-----HHHHHHhhcCC-CCHHHHhH---HHHHhcCCCh--hh
Q 004132 10 LFTDVVNCMQTENLELKKLVYLYLINYAKS-QPDLAIL-----AVNTFVKDSQD-PNPLIRAL---AVRTMGCIRV--DK 77 (772)
Q Consensus 10 lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~-~~dl~lL-----~iNtl~kDl~~-~np~iral---ALrtl~~I~~--~e 77 (772)
+.+..|+++.+++..+++-+--++.+++.. +++--.. +|..|.+-|.+ .++.++.. ||..|+.... ..
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~ 170 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME 170 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH
Confidence 467788999999999999999999999974 4443222 24556777765 56666666 4555555221 23
Q ss_pred hHHHHHHHHHhhh------------------CCCChHHHHHHHHHHHHHHhhccc----cccccchHHHHHHhhc-----
Q 004132 78 ITEYLCDPLQRCL------------------KDDDPYVRKTAAICVAKLYDINAE----LVEDRGFLESLKDLIS----- 130 (772)
Q Consensus 78 i~~~l~~~v~~~L------------------~d~~pyVRK~Aa~~l~kl~~~~p~----~~~~~~~~~~L~~lL~----- 130 (772)
|++.-++++.+++ ...++.|++.|+-|+..+-..+++ +++..+.++.|..+|.
T Consensus 171 I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~ 250 (584)
T 3l6x_A 171 IVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ 250 (584)
T ss_dssp HHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcc
Confidence 4455567777765 124689999999999998754433 3333577777777765
Q ss_pred -CCChhHHHHHHHHHHHHHhhC----C--------------------CCccc--ccHHHHHHHHHHhhcC-ChhHHHHHH
Q 004132 131 -DNNPMVVANAVAALAEIEENS----S--------------------RPIFE--ITSHTLSKLLTALNEC-TEWGQVFIL 182 (772)
Q Consensus 131 -D~d~~Vv~~av~aL~eI~~~~----~--------------------~~~~~--l~~~~~~~Ll~~L~~~-~ew~qv~iL 182 (772)
+.+...+-+|+.+|.-++..- + ..-.+ .....++.|+..|..+ ++..+....
T Consensus 251 ~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa 330 (584)
T 3l6x_A 251 KDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASA 330 (584)
T ss_dssp TCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHH
Confidence 345677888888886665320 0 00011 1234567777777654 678888888
Q ss_pred HHHhccccCCH---HHH------HHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCC-
Q 004132 183 DALSRYKAADA---REA------ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA- 252 (772)
Q Consensus 183 ~~L~~~~~~~~---~e~------~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~- 252 (772)
.+|+.++..+. ... +..++.+..+|.+.+..|+..|+.++-++...-.+... +....++.|+.+|..
T Consensus 331 ~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~---I~~g~ip~LV~LL~~~ 407 (584)
T 3l6x_A 331 GAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKEL---IGKHAIPNLVKNLPGG 407 (584)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHH---HHHHHHHHHHHTSSSS
T ss_pred HHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHH---HHhCCHHHHHHHhcCC
Confidence 88887754331 111 24567788899999999999999999887643333333 345678889998853
Q ss_pred --------chhHHHHHHHHHHHHHhhChhhhh---h-h-cc-eeeeccCC--cHhHHHHHHHHHHHhcccccHHHHHHH
Q 004132 253 --------EPEIQYVALRNINLIVQRRPTILA---H-E-IK-VFFCKYND--PIYVKMEKLEIMIKLASDRNIDQVLLE 315 (772)
Q Consensus 253 --------~~~iryvaL~~l~~i~~~~p~~~~---~-~-~~-if~~~~~d--~~~Ik~~kL~lL~~L~n~~Nv~~Il~E 315 (772)
..+++.-++++|..|+...++-.+ . . +. ...++.+. ...+++.|--+|..|++.+.....+++
T Consensus 408 ~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk 486 (584)
T 3l6x_A 408 QQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEK 486 (584)
T ss_dssp SCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHT
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 247888899999999877654211 1 1 11 22334442 567888888888888887666666554
No 64
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.31 E-value=2.9e-05 Score=87.16 Aligned_cols=299 Identities=11% Similarity=0.094 Sum_probs=176.6
Q ss_pred HHHHHHhhhCCC------------ChHHHHHHHHHHHHHHhhccccccc---cchH----------HHHHHhhcCC----
Q 004132 82 LCDPLQRCLKDD------------DPYVRKTAAICVAKLYDINAELVED---RGFL----------ESLKDLISDN---- 132 (772)
Q Consensus 82 l~~~v~~~L~d~------------~pyVRK~Aa~~l~kl~~~~p~~~~~---~~~~----------~~L~~lL~D~---- 132 (772)
++|.+.++|.+. ++-+|..|+.|+..+....|+.... .+.+ +.+.+++...
T Consensus 71 ~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (458)
T 3nmz_A 71 CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM 150 (458)
T ss_dssp CHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSS
T ss_pred CHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Confidence 456677777753 3799999999999999999986532 1223 2233344322
Q ss_pred ----ChhH-------HHHHHHHHHHHHhhCCCCccc-ccHHHHHHHHHHhhc-----------CChhHHHHHHHHHhccc
Q 004132 133 ----NPMV-------VANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNE-----------CTEWGQVFILDALSRYK 189 (772)
Q Consensus 133 ----d~~V-------v~~av~aL~eI~~~~~~~~~~-l~~~~~~~Ll~~L~~-----------~~ew~qv~iL~~L~~~~ 189 (772)
+| | ..+|+.+|..|... +...-. .....+..|+..|.. .++-.|......|..++
T Consensus 151 ~~~~~~-~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 151 DQDKNP-MPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp CCCSCC---CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCC-ccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 12 3 33888889887533 111100 112244555555521 12335667777777776
Q ss_pred cCCHHHH------HHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH-Hhcccchhhcc-C-CchhHHHHH
Q 004132 190 AADAREA------ENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLL-S-AEPEIQYVA 260 (772)
Q Consensus 190 ~~~~~e~------~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~-~~~~~~L~~Ll-s-~~~~iryva 260 (772)
..++... ...++.+..+|++.+..|...|+.++.++... .+++....+. ...+++|+.+| + .+++++-.+
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A 307 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence 5544221 23477888899999999999999999876321 1233323332 24678889864 4 578899988
Q ss_pred HHHHHHHHhhCh----hhhhhh--cce-eeeccC-Cc---HhHHHHHHHHHHHhc-----ccccHHHH-----HHHHHHh
Q 004132 261 LRNINLIVQRRP----TILAHE--IKV-FFCKYN-DP---IYVKMEKLEIMIKLA-----SDRNIDQV-----LLEFKEY 319 (772)
Q Consensus 261 L~~l~~i~~~~p----~~~~~~--~~i-f~~~~~-d~---~~Ik~~kL~lL~~L~-----n~~Nv~~I-----l~EL~~y 319 (772)
++.|..|+...+ .+.... +.. ...+.+ ++ ..++..+.-+|..|+ +++|.+.| +.-|.+.
T Consensus 308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L 387 (458)
T 3nmz_A 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387 (458)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence 888888876332 222111 111 111222 22 147777777777776 45555544 3456666
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccH
Q 004132 320 ATEVDVDFVRKAVRAIGRCAIKLERA-----AERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTY 383 (772)
Q Consensus 320 ~~~~d~~~~~~~v~aIg~la~k~~~~-----~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~ 383 (772)
+...+.+.++.++.+|+.++..-+.. ..-++..|+++++.+...+..++...+.++....|..|
T Consensus 388 L~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 388 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp SSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 67777777778888887777432211 12346667777766666666777777777777666655
No 65
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.5e-05 Score=90.43 Aligned_cols=283 Identities=11% Similarity=0.098 Sum_probs=167.2
Q ss_pred CHHHHhHHHHHhcCCCh-----hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc----cccccchHHHHHHhh
Q 004132 59 NPLIRALAVRTMGCIRV-----DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE----LVEDRGFLESLKDLI 129 (772)
Q Consensus 59 np~iralALrtl~~I~~-----~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~----~~~~~~~~~~L~~lL 129 (772)
++.+|.+|+-.|+.++. ..-+..+.+.+++.|.+.+.-.|+-|+.++.-+- .+|+ +..+.++++.|.+++
T Consensus 307 ~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLS-l~~~VKe~L~~d~~~L~~Lv~ll 385 (778)
T 3opb_A 307 VEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLS-LKASVKIMIRSNESFTEILLTMI 385 (778)
T ss_dssp SGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHT-TSSHHHHHHHHCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-CCHHHHHHHHhCHHHHHHHHHHH
Confidence 36889999999988763 1233567888899998877666999999999874 3443 455678889999999
Q ss_pred cC-CChhHHHHHHHHHHHHHhhCCCCcc---c------------------------------------ccHHHHHHHHHH
Q 004132 130 SD-NNPMVVANAVAALAEIEENSSRPIF---E------------------------------------ITSHTLSKLLTA 169 (772)
Q Consensus 130 ~D-~d~~Vv~~av~aL~eI~~~~~~~~~---~------------------------------------l~~~~~~~Ll~~ 169 (772)
++ .+..+.+.++..|.-+....+.... . +..+.+..|+..
T Consensus 386 k~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~L 465 (778)
T 3opb_A 386 KSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKRE 465 (778)
T ss_dssp TTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred hCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHH
Confidence 85 7788999999988888764332100 0 000111223333
Q ss_pred hhcCChhHHHHHHHHHhccccCCHHHH-----HHHHHHHhHhhcCCCHH---HHHHHHHHHHHhhhhcCChHHHH--HHH
Q 004132 170 LNECTEWGQVFILDALSRYKAADAREA-----ENIVERVTPRLQHANCA---VVLSAVKMILQQMELITSTDVVR--NLC 239 (772)
Q Consensus 170 L~~~~ew~qv~iL~~L~~~~~~~~~e~-----~~il~~v~~~L~~~n~a---Vv~eaik~i~~~~~~i~~~~~~~--~l~ 239 (772)
+...++=.|..+.++|..+... .+.. ...++.+...|.+.... +...|++++.+++-. .++...- .-.
T Consensus 466 l~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis-~np~~~f~~~~~ 543 (778)
T 3opb_A 466 MHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIF-TNPGLIFKKYSA 543 (778)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHT-SCHHHHSSSSCS
T ss_pred HcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc-CCHHHHcCCCcc
Confidence 3334455555555555554321 1111 12345566666554332 677788888776521 2333210 000
Q ss_pred HhcccchhhccCCchh--------------H-HHHHHHHHHHHHhhC--------hhhhhh--hcc-eeeeccCCcHhHH
Q 004132 240 KKMAPPLVTLLSAEPE--------------I-QYVALRNINLIVQRR--------PTILAH--EIK-VFFCKYNDPIYVK 293 (772)
Q Consensus 240 ~~~~~~L~~Lls~~~~--------------i-ryvaL~~l~~i~~~~--------p~~~~~--~~~-if~~~~~d~~~Ik 293 (772)
...++||+.||..+++ + +|-||.+|..|+... ..++.. .+. +..++.++...||
T Consensus 544 ~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vr 623 (778)
T 3opb_A 544 LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623 (778)
T ss_dssp TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHH
T ss_pred ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHH
Confidence 1355778888762222 1 788888888887653 113332 222 3345556667788
Q ss_pred HHHHHHHHHhcccc-cH-HHH-----------HHHHHHhhhhccHHHHHHHHHHHHHHHHhhhh
Q 004132 294 MEKLEIMIKLASDR-NI-DQV-----------LLEFKEYATEVDVDFVRKAVRAIGRCAIKLER 344 (772)
Q Consensus 294 ~~kL~lL~~L~n~~-Nv-~~I-----------l~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~ 344 (772)
+.+.+++..|+... .+ ..+ ++-|..++...|.+.++.+..+++.++...+.
T Consensus 624 rAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ 687 (778)
T 3opb_A 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL 687 (778)
T ss_dssp HHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH
Confidence 88888888876433 21 111 44456777777777777777777777654443
No 66
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.27 E-value=5.7e-05 Score=92.93 Aligned_cols=425 Identities=10% Similarity=0.087 Sum_probs=211.2
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhh----hHHHH
Q 004132 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDK----ITEYL 82 (772)
Q Consensus 14 vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~-------~~e----i~~~l 82 (772)
++..+.++|.+.|+-+.-++.. ++.+|+.-..+..-+.+ +.++.+|-.|+.+|-+.. .++ +-+++
T Consensus 12 ~l~~~~~~d~~~r~~A~~~L~~-~~~~p~~w~~~~~lL~~---~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~l 87 (971)
T 2x1g_F 12 AVVSFYRSNSQNQAITHEWLTD-AEASPQAWQFSWQLMQL---GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKI 87 (971)
T ss_dssp THHHHHTSTTTC----CHHHHH-TTTSTHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHH-HHcCHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHH
Confidence 3444456777788888888877 45567754444333332 578999999988886531 122 23344
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCC------ChhHHHHHHHHHHHHHh----hCC
Q 004132 83 CDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDN------NPMVVANAVAALAEIEE----NSS 152 (772)
Q Consensus 83 ~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~------d~~Vv~~av~aL~eI~~----~~~ 152 (772)
...+.+.-. ..++||.+.+.|+..+.+.+-..- .++++.|..++... ++...-.++..|..+++ .+.
T Consensus 88 l~~l~~~~~-~~~~vr~kl~~~la~i~~~~~p~W--p~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~ 164 (971)
T 2x1g_F 88 LESIVRFAG-GPKIVLNRLCISLGAYIVHMLGEW--PGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHT 164 (971)
T ss_dssp HHHHHHHTT-SCHHHHHHHHHHHHHHHHHTTCC--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHHHHHccccc--cHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCc
Confidence 444444332 368999999999999987742211 23455566666543 45566666666665553 211
Q ss_pred CCc-------ccccHHHHHHHH-HHhhc-CCh------h-HHHHHHHHHhccc-----cCCHHHHHHHHHHHhHhh----
Q 004132 153 RPI-------FEITSHTLSKLL-TALNE-CTE------W-GQVFILDALSRYK-----AADAREAENIVERVTPRL---- 207 (772)
Q Consensus 153 ~~~-------~~l~~~~~~~Ll-~~L~~-~~e------w-~qv~iL~~L~~~~-----~~~~~e~~~il~~v~~~L---- 207 (772)
... +....+.+..++ +.+.. .++ | ....+|+++..|. |.+ ....+++.+.. |
T Consensus 165 ~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~ 241 (971)
T 2x1g_F 165 SVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKC 241 (971)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhh
Confidence 100 000111111122 11211 111 3 4566777776543 222 22345554444 3
Q ss_pred ------------cCCCHHHHHHHHHHHHHhhhhcCC---hHHHHHHHHhcccchhhc----cCCch---hHHHHHHHHHH
Q 004132 208 ------------QHANCAVVLSAVKMILQQMELITS---TDVVRNLCKKMAPPLVTL----LSAEP---EIQYVALRNIN 265 (772)
Q Consensus 208 ------------~~~n~aVv~eaik~i~~~~~~i~~---~~~~~~l~~~~~~~L~~L----ls~~~---~iryvaL~~l~ 265 (772)
.+.++.+.-.|+.++..+...-.. ...+..+...+......+ -..+. +..+...+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~ 321 (971)
T 2x1g_F 242 YWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFV 321 (971)
T ss_dssp HSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHH
T ss_pred ccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 013456666777777766531110 122222222211111111 12343 66666777777
Q ss_pred HHHhhChhhhh-----------hh----cce-eeec-c----CCcHhHHHHHHHHHHHhccc----------c-------
Q 004132 266 LIVQRRPTILA-----------HE----IKV-FFCK-Y----NDPIYVKMEKLEIMIKLASD----------R------- 307 (772)
Q Consensus 266 ~i~~~~p~~~~-----------~~----~~i-f~~~-~----~d~~~Ik~~kL~lL~~L~n~----------~------- 307 (772)
.++..++..+. .+ +.. +.|. . .++..|...+++.+..++.+ .
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~ 401 (971)
T 2x1g_F 322 SSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIK 401 (971)
T ss_dssp HHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 77776665543 22 222 2232 1 23456888999988777641 1
Q ss_pred -cHHHHHHHHHHhhh---hc-----c-------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc--------cc-
Q 004132 308 -NIDQVLLEFKEYAT---EV-----D-------VDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK--------VN- 362 (772)
Q Consensus 308 -Nv~~Il~EL~~y~~---~~-----d-------~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~--------~~- 362 (772)
-+..++..+..-+. +. | .++|+.+...+..++..++ +.+++.+++.+... .+
T Consensus 402 ~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w 478 (971)
T 2x1g_F 402 PLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHW 478 (971)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcH
Confidence 11122232222221 10 1 1355666666666665554 23444444443321 12
Q ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccC----ChHHHHHHHHHHHhhhccccCC----HHHHHHHHhhhCCCC
Q 004132 363 YVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTL----DEPEAKASMIWIIGEYAERIDN----ADELLESFLESFPEE 434 (772)
Q Consensus 363 ~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~----~~p~a~~~~iwilGEy~~~i~~----~~~~L~~l~~~f~~e 434 (772)
...+.++..+..+.+..++.....+..+++.+..+ ..|.++..++|++|.|++.+.. -+.++..++..+ +
T Consensus 479 ~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~- 556 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N- 556 (971)
T ss_dssp HHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H-
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C-
Confidence 23444455555554433221112233333333211 2688899999999999987653 345566666555 2
Q ss_pred CHHHHHHHHHHHHHHhhcCC
Q 004132 435 PAQVQLQLLTATVKLFLKKP 454 (772)
Q Consensus 435 ~~~vq~~lLta~~Kl~~~~p 454 (772)
+.|+...-.|+.++.-...
T Consensus 557 -~~v~~~A~~al~~l~~~~~ 575 (971)
T 2x1g_F 557 -SSMSAQATLGLKELCRDCQ 575 (971)
T ss_dssp -SSCHHHHHHHHHHHHHHCH
T ss_pred -hHHHHHHHHHHHHHHHHHH
Confidence 5688888888888875543
No 67
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.25 E-value=1.8e-05 Score=80.85 Aligned_cols=173 Identities=14% Similarity=0.159 Sum_probs=114.5
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCChh------hhHHHHHHHHHhhhC-CCChHHHHHHHHHHHHHHhhccccccc--cch
Q 004132 51 FVKDSQDPNPLIRALAVRTMGCIRVD------KITEYLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINAELVED--RGF 121 (772)
Q Consensus 51 l~kDl~~~np~iralALrtl~~I~~~------ei~~~l~~~v~~~L~-d~~pyVRK~Aa~~l~kl~~~~p~~~~~--~~~ 121 (772)
|.+.++|.+...|-.|+..|+.+... .-...+.+.+++++. |+++.||+.|+.|+..+...-...+.. ..+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~i 99 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASAC 99 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45555667777776666666544211 112455666777784 888888888888888887543322221 235
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhcc----ccC--CHHH
Q 004132 122 LESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRY----KAA--DARE 195 (772)
Q Consensus 122 ~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~----~~~--~~~e 195 (772)
++.|...+.|+++.|+.+|..+|..+....+ ....+..++..+.+.++..+..++.+|... .|. ....
T Consensus 100 lp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~ 173 (242)
T 2qk2_A 100 VPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL 173 (242)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH
Confidence 6777777788888888888888888765421 123456666777666666677777766653 222 2345
Q ss_pred HHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhc
Q 004132 196 AENIVERVTPRLQHANCAVVLSAVKMILQQMELI 229 (772)
Q Consensus 196 ~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i 229 (772)
...+++.+...+.+.++.|.-.|+.++..+...+
T Consensus 174 l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 174 LKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 5678888889999999999999999988764433
No 68
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.22 E-value=0.0001 Score=70.42 Aligned_cols=209 Identities=14% Similarity=0.201 Sum_probs=145.5
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCC--hhHHHHHHHHHhccccCCHHHHH
Q 004132 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECT--EWGQVFILDALSRYKAADAREAE 197 (772)
Q Consensus 120 ~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~--ew~qv~iL~~L~~~~~~~~~e~~ 197 (772)
.|++.+..+|.|.=..|+.||+..+..|....+ ++..+.+.+|+..++... |.. ..|-+.+.......++...
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~----el~epl~~kL~vm~~ksEaIplt-qeIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE----DLYEPMLKKLFSLLKKSEAIPLT-QEIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG----GGHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhcccCchH-HHHHHHHhHHHHhCHHHHH
Confidence 478889999999888999999999999986554 456667888888775432 222 2333444444444466666
Q ss_pred HHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc-CCchhHHHHHHHHHHHHHhhChhhhh
Q 004132 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL-SAEPEIQYVALRNINLIVQRRPTILA 276 (772)
Q Consensus 198 ~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll-s~~~~iryvaL~~l~~i~~~~p~~~~ 276 (772)
.+++.+....+-.++-+...-.-++-.++ ..+|+....+.+. +..++ +++..-|.+||+-|.-+...++..+.
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIa--ranP~l~~~v~rd----i~smltskd~~Dkl~aLnFi~alGen~~~yv~ 180 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIA--KANPMLMASIVRD----FMSMLSSKNREDKLTALNFIEAMGENSFKYVN 180 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHH--HHCHHHHHHHHHH----HHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHH--HhChHHHHHHHHH----HHHHhcCCChHHHHHHHHHHHHHhccCccccC
Confidence 66666666555555544443333332221 1256665554333 35566 56788999999999999999999888
Q ss_pred hhcc-eeeeccCCcHhHHHHHHHHHHHhcc--cccHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 004132 277 HEIK-VFFCKYNDPIYVKMEKLEIMIKLAS--DRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAI 340 (772)
Q Consensus 277 ~~~~-if~~~~~d~~~Ik~~kL~lL~~L~n--~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~ 340 (772)
+++. .|-.++|++.-||.-+.+.|..++. +. +..++.+-.+-+.+.+..+..+...++++++.
T Consensus 181 PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 181 PFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 8874 6677889999999999999999874 44 67777776666777777777777788888764
No 69
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.14 E-value=0.0098 Score=69.87 Aligned_cols=454 Identities=11% Similarity=0.107 Sum_probs=236.6
Q ss_pred cCCCcchHHHHHHHHHHhccCCCcH----HHHHHHHHHh--hc-CCCCHHHHhHHHHHhcCCChhhhHHHH------HHH
Q 004132 19 QTENLELKKLVYLYLINYAKSQPDL----AILAVNTFVK--DS-QDPNPLIRALAVRTMGCIRVDKITEYL------CDP 85 (772)
Q Consensus 19 ~s~~~~lKrl~YL~l~~~~~~~~dl----~lL~iNtl~k--Dl-~~~np~iralALrtl~~I~~~ei~~~l------~~~ 85 (772)
..+..++|.++-+.+..+.+..++. ..=.+-++.- |- .+.++++.+...-++.-=..|+++-.+ .+.
T Consensus 180 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~ 259 (778)
T 3opb_A 180 RISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKL 259 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHH
T ss_pred ccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHH
Confidence 4555567777777666666554432 2222222221 11 256677776666666665666666433 344
Q ss_pred HHhhhCC-CChHHHHHHHHHHHHHH--hhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHH
Q 004132 86 LQRCLKD-DDPYVRKTAAICVAKLY--DINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHT 162 (772)
Q Consensus 86 v~~~L~d-~~pyVRK~Aa~~l~kl~--~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~ 162 (772)
+++.+.. ++.-+.+.....+.... +.+.+.+. ..+++.|..++.+ ..+..-|+..|..+..........+ ...
T Consensus 260 l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~-~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si-~~L 335 (778)
T 3opb_A 260 FKKRVFEEQDLQFTKELLRLLSSACIDETMRTYIT-ENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINL-KQL 335 (778)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHH-HHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCH-HHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHH-HhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcH-HHH
Confidence 4444433 33333333322222211 11223332 2456777777754 3555555566666654432211111 122
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHhccccCC-HH----HHHHHHHHHhHhhcC-CCHHHHHHHHHHHHHhhhhcCCh----
Q 004132 163 LSKLLTALNECTEWGQVFILDALSRYKAAD-AR----EAENIVERVTPRLQH-ANCAVVLSAVKMILQQMELITST---- 232 (772)
Q Consensus 163 ~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~-~~----e~~~il~~v~~~L~~-~n~aVv~eaik~i~~~~~~i~~~---- 232 (772)
...+.+.|...+.=.+-..++.|+...-.. .+ +-...+..+...+++ .+..+.|++..++.++..+..+.
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~ 415 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXX 415 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhh
Confidence 233333333322112455555555443221 11 123456777788875 67899999999999987643221
Q ss_pred HHHHHHHHhcccchhhccC-CchhH----------HHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHH
Q 004132 233 DVVRNLCKKMAPPLVTLLS-AEPEI----------QYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMI 301 (772)
Q Consensus 233 ~~~~~l~~~~~~~L~~Lls-~~~~i----------ryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~ 301 (772)
..+.++ ..+.+ +.|+. -++.-.+-..+... .++.. ...++.+++..+|..+..+|.
T Consensus 416 ~~l~~L--------k~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea--GvIp~---Lv~Ll~S~s~~~re~A~~aL~ 482 (778)
T 3opb_A 416 XXXXXX--------XXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT--ELISF---LKREMHNLSPNCKQQVVRIIY 482 (778)
T ss_dssp C--------------------------CCTHHHHHHHHHHHHHHHTTTT--THHHH---HHHHGGGSCHHHHHHHHHHHH
T ss_pred hhhhhh--------hhhccccCcccCcccccccchHHHHHHHHHHHHHC--cCHHH---HHHHHcCCCHHHHHHHHHHHH
Confidence 111111 11111 00110 01111111111111 11110 112345667889999999999
Q ss_pred Hhccc-ccHHHH-----HHHHHHhhhhccHH---HHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHhhc-cch-
Q 004132 302 KLASD-RNIDQV-----LLEFKEYATEVDVD---FVRKAVRAIGRCAIKLERA-------AERCISVLLELIKIK-VNY- 363 (772)
Q Consensus 302 ~L~n~-~Nv~~I-----l~EL~~y~~~~d~~---~~~~~v~aIg~la~k~~~~-------~~~~vd~Ll~ll~~~-~~~- 363 (772)
.|+.. +|...+ ++-|+.++.+.... .+..+.++++++++...+. ....+..|++||... +..
T Consensus 483 nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~ 562 (778)
T 3opb_A 483 NITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDD 562 (778)
T ss_dssp HHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSS
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccc
Confidence 99754 444443 45677887665433 7889999999999643211 125788899998821 110
Q ss_pred ------------hHHHHHHHHHHHHHhCc----ccHHHH------HHHHHHhcccCChHHHHHHHHHHHhhhccc-----
Q 004132 364 ------------VVQEAIIVIKDIFRRYP----NTYESI------IATLCESLDTLDEPEAKASMIWIIGEYAER----- 416 (772)
Q Consensus 364 ------------v~~e~i~~l~~i~~~~p----~~~~~i------i~~L~~~l~~~~~p~a~~~~iwilGEy~~~----- 416 (772)
-..+++..+.++..... +.+..+ ++.+.+.+.+ +.+.++.+++|++......
T Consensus 563 ~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s-~n~~VrrAA~elI~NL~~~~e~i~ 641 (778)
T 3opb_A 563 NPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD-ENVPLQRSTLELISNMMSHPLTIA 641 (778)
T ss_dssp CC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHTSGGGTG
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC-CCHHHHHHHHHHHHHHhCCcHHHH
Confidence 15588888888866431 233333 4455555543 4567888899988665321
Q ss_pred --c---CCHH--HHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC-----ChHHHHHHHHHhhhcCCCChHHHhhHHH
Q 004132 417 --I---DNAD--ELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE-----GPQQMIQVVLNNATVETDNPDLRDRAYI 484 (772)
Q Consensus 417 --i---~~~~--~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~-----~~~~~v~~vl~~~~~~s~~~dvrdRA~~ 484 (772)
+ .++. .-|..++.-...++.++|.++.-|++-+....|.- +....+..++..+....++.++|.||..
T Consensus 642 ~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~ 721 (778)
T 3opb_A 642 AKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLM 721 (778)
T ss_dssp GGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHH
Confidence 1 1111 12566666566789999999888888875444320 0123455556655432478999999988
Q ss_pred HHHHhc
Q 004132 485 YWRLLS 490 (772)
Q Consensus 485 y~~Ll~ 490 (772)
..+-+.
T Consensus 722 ~l~NL~ 727 (778)
T 3opb_A 722 LFFGLF 727 (778)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 70
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.13 E-value=0.0003 Score=86.45 Aligned_cols=243 Identities=12% Similarity=0.150 Sum_probs=138.6
Q ss_pred cchHHHHHHHHHHhccCCCcHHH-HHHHHHHhhcC------CCCHHHHhHHHHHhcCCCh---------h------hhHH
Q 004132 23 LELKKLVYLYLINYAKSQPDLAI-LAVNTFVKDSQ------DPNPLIRALAVRTMGCIRV---------D------KITE 80 (772)
Q Consensus 23 ~~lKrl~YL~l~~~~~~~~dl~l-L~iNtl~kDl~------~~np~iralALrtl~~I~~---------~------ei~~ 80 (772)
.+.|+-+.-.+..++...++..+ .+.+.+..=++ ++|...|-.|+.++|.|.. . ++.+
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 35677777777777777765333 22222222222 5678889899998877621 1 4555
Q ss_pred HHHHHHHhhhCCC---ChHHHHHHHHHHHHHHhhc-cccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCC----
Q 004132 81 YLCDPLQRCLKDD---DPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSS---- 152 (772)
Q Consensus 81 ~l~~~v~~~L~d~---~pyVRK~Aa~~l~kl~~~~-p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~---- 152 (772)
.+...+...+.|+ +|+||.+|+.+++++...- |+..+ .+++.+...|.|.++.|..+|+.+|..+++...
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~ 532 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS 532 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccc
Confidence 5555566677777 9999999999999987653 33333 256667777889899999999999999887421
Q ss_pred ------C-CcccccHHHHHHHHHHhhcC---------ChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhh----cC-CC
Q 004132 153 ------R-PIFEITSHTLSKLLTALNEC---------TEWGQVFILDALSRYKAADAREAENIVERVTPRL----QH-AN 211 (772)
Q Consensus 153 ------~-~~~~l~~~~~~~Ll~~L~~~---------~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L----~~-~n 211 (772)
. .+-....+.+.+|+..+... .+..--.+-+++..+...-..-+..+++.+...+ ++ .+
T Consensus 533 ~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~ 612 (960)
T 1wa5_C 533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN 612 (960)
T ss_dssp CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCC
Confidence 1 12233455666677666553 2222222222222222111112334444444333 22 34
Q ss_pred HHH---HHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCC-chhHHHHHHHHHHHHHhhC
Q 004132 212 CAV---VLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSA-EPEIQYVALRNINLIVQRR 271 (772)
Q Consensus 212 ~aV---v~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~-~~~iryvaL~~l~~i~~~~ 271 (772)
+.. .++|+.++... ..++....+...+.+++...+.+ ..+..=-++..+..++...
T Consensus 613 ~~~~~~~~e~l~~l~~~----~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 613 PRFTHYTFESIGAILNY----TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHHHHT----SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 433 46666666542 24445556666777777777743 2333333666666665543
No 71
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.06 E-value=9.8e-05 Score=78.05 Aligned_cols=187 Identities=12% Similarity=0.033 Sum_probs=135.1
Q ss_pred CCCccchhHHHHHhhcCCCc------------chHHHHHHHHHHhccCCCcHHHH-----HHHHHHh-hcCCCCHHHHhH
Q 004132 4 GKDVSSLFTDVVNCMQTENL------------ELKKLVYLYLINYAKSQPDLAIL-----AVNTFVK-DSQDPNPLIRAL 65 (772)
Q Consensus 4 G~Dvs~lf~~vi~l~~s~~~------------~lKrl~YL~l~~~~~~~~dl~lL-----~iNtl~k-Dl~~~np~iral 65 (772)
|.|......+++..+.++.. +.|..+---+..+.+ +.|.+.. .+..|.+ -|+++++.+|..
T Consensus 23 ~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~ 101 (296)
T 1xqr_A 23 QRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWR 101 (296)
T ss_dssp CHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHH
Confidence 36667778888888887632 344444435555554 3333322 3455777 899999999999
Q ss_pred HHHHhcCCC--hhhhHH-----HHHHHHHhhhCC-CChHHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCCh
Q 004132 66 AVRTMGCIR--VDKITE-----YLCDPLQRCLKD-DDPYVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNP 134 (772)
Q Consensus 66 ALrtl~~I~--~~ei~~-----~l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~L~~lL~D~d~ 134 (772)
|+++||+|. +++..+ -.++++.++|.+ +++-||++|+.|+..+.+-+|+ .+...+.++.|..+|.+.++
T Consensus 102 Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~ 181 (296)
T 1xqr_A 102 AAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ 181 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCH
Confidence 999999985 343333 256888899984 6899999999999999876654 33345678999999999999
Q ss_pred hHHHHHHHHHHHHHhhCCCCccc-ccHHHHHHHHHHhhcCChhHHHHHHHHHhccccC
Q 004132 135 MVVANAVAALAEIEENSSRPIFE-ITSHTLSKLLTALNECTEWGQVFILDALSRYKAA 191 (772)
Q Consensus 135 ~Vv~~av~aL~eI~~~~~~~~~~-l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~ 191 (772)
.|...|+.+|..++..++..... .....+..|+..|...++=.|...+++|..+...
T Consensus 182 ~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 182 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999998764332111 1234677788888777888888888888776544
No 72
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.05 E-value=9.2e-05 Score=76.25 Aligned_cols=182 Identities=14% Similarity=0.068 Sum_probs=130.8
Q ss_pred HHHhhcCCCCHHHHhHHHHHhcC-CC--hhhhH------HHHHHHHHhhh-CCCChHHHHHHHHHHHHHHhhcc-cccc-
Q 004132 50 TFVKDSQDPNPLIRALAVRTMGC-IR--VDKIT------EYLCDPLQRCL-KDDDPYVRKTAAICVAKLYDINA-ELVE- 117 (772)
Q Consensus 50 tl~kDl~~~np~iralALrtl~~-I~--~~ei~------~~l~~~v~~~L-~d~~pyVRK~Aa~~l~kl~~~~p-~~~~- 117 (772)
.|..-++++++..|-.|+..|+. +. .+++. ..+...+++++ +|+++.||..|+.|+..+...-. ..+.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35566788999999888888888 63 22322 45677889999 89999999999999999986543 2333
Q ss_pred c--cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccc-cHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCH-
Q 004132 118 D--RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNECTEWGQVFILDALSRYKAADA- 193 (772)
Q Consensus 118 ~--~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~- 193 (772)
. ..+++.+...+.|+.+.|+.++..++..+++.-.+..... ....+..|+..|...++-.+...+.+|.++.....
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 2 1256777888899999999998888888887642211111 34567788888877765567777888776653221
Q ss_pred ------HHH-HHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCC
Q 004132 194 ------REA-ENIVERVTPRLQHANCAVVLSAVKMILQQMELITS 231 (772)
Q Consensus 194 ------~e~-~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~ 231 (772)
... ..+++.+...+.+.++.|+-.|+.++..+...+++
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 234 57888888899999999999999988776544443
No 73
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.05 E-value=0.00011 Score=79.85 Aligned_cols=216 Identities=12% Similarity=0.088 Sum_probs=147.8
Q ss_pred CCHHHHhHHHHHhcCCC--hh---hhH---HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh-cc---ccccccchHHHH
Q 004132 58 PNPLIRALAVRTMGCIR--VD---KIT---EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NA---ELVEDRGFLESL 125 (772)
Q Consensus 58 ~np~iralALrtl~~I~--~~---ei~---~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~-~p---~~~~~~~~~~~L 125 (772)
.++.+|-.|..+|.++. .+ ..+ .-.+|.+.++|.+.++.||..|+.++..+-.. ++ +.+.+.|.++.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 46778888877777764 22 222 23489999999999999999999999998753 22 344456788999
Q ss_pred HHh-hcCCChhHHHHHHHHHHHHHhhCCCCcccc--cHHHHHHHHHHhhcCC--hh--HHHHHHHHHhcccc---CCHHH
Q 004132 126 KDL-ISDNNPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECT--EW--GQVFILDALSRYKA---ADARE 195 (772)
Q Consensus 126 ~~l-L~D~d~~Vv~~av~aL~eI~~~~~~~~~~l--~~~~~~~Ll~~L~~~~--ew--~qv~iL~~L~~~~~---~~~~e 195 (772)
.++ +...++.++.+|+.+|..++.........+ ....+..|++.|...+ +| .+.....+|+.+.. .+++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 996 567789999999999998876321111111 2345666777776443 34 34334444443331 23332
Q ss_pred HH-----HHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH-HhcccchhhccC-CchhHHHHHHHHHHHHH
Q 004132 196 AE-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC-KKMAPPLVTLLS-AEPEIQYVALRNINLIV 268 (772)
Q Consensus 196 ~~-----~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~-~~~~~~L~~Lls-~~~~iryvaL~~l~~i~ 268 (772)
.. ..+..+..+|++.+..++-+|+.++.++.. .+++....+. ..++++|+.|+. +++.+|-.|...|..|.
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC--CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 22 246778888999999999999999998641 2454444433 246788999984 68899999999999999
Q ss_pred hhChhhh
Q 004132 269 QRRPTIL 275 (772)
Q Consensus 269 ~~~p~~~ 275 (772)
...|...
T Consensus 334 ~~~~~~~ 340 (354)
T 3nmw_A 334 ANRPAKY 340 (354)
T ss_dssp TTCCGGG
T ss_pred cCCHHHH
Confidence 8877643
No 74
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.99 E-value=0.0011 Score=82.15 Aligned_cols=432 Identities=12% Similarity=0.115 Sum_probs=211.1
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhhhHHHHHH
Q 004132 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKITEYLCD 84 (772)
Q Consensus 12 ~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~-------~~ei~~~l~~ 84 (772)
-.++..+.+++-..|+-+.-++..+ +.+|+....+..-+.+ +.++.+|-.|+.+|-+.. .++-...+-.
T Consensus 19 ~~~l~~~~~p~~~~r~~Ae~~L~~~-~~~p~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~ 94 (1049)
T 3m1i_C 19 DQVVSTFYQGSGVQQKQAQEILTKF-QDNPDAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN 94 (1049)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHH-HHSTTGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHH-HhCchHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH
Confidence 3555555566667888888888776 5567755555555544 568999999988887542 2333334444
Q ss_pred HHHhhhCC----C-----ChHHHHHHHHHHHHHHhh-ccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhh----
Q 004132 85 PLQRCLKD----D-----DPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN---- 150 (772)
Q Consensus 85 ~v~~~L~d----~-----~pyVRK~Aa~~l~kl~~~-~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~---- 150 (772)
.+..++.+ + +++||.+.+.++..+.+. .|+.-+ ++++.|..+++ .++...-+++..|..+++.
T Consensus 95 ~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp--~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~ 171 (1049)
T 3m1i_C 95 FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP--EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDF 171 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch--HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHh
Confidence 44444443 2 589999999999999877 465443 36777777776 4554444444444444421
Q ss_pred CCCCc--------ccccHHHHHHHHHHh----hc-CChhHHHHHHHHHhccccCCH-HH--HHHHHHHHhHhhcCCCHHH
Q 004132 151 SSRPI--------FEITSHTLSKLLTAL----NE-CTEWGQVFILDALSRYKAADA-RE--AENIVERVTPRLQHANCAV 214 (772)
Q Consensus 151 ~~~~~--------~~l~~~~~~~Ll~~L----~~-~~ew~qv~iL~~L~~~~~~~~-~e--~~~il~~v~~~L~~~n~aV 214 (772)
+.... .......+..++..+ .. .++=....+|+++..|...-+ .. ...+++.+...+. .++.+
T Consensus 172 ~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~ 250 (1049)
T 3m1i_C 172 SAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDT 250 (1049)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhH
Confidence 11100 011111222222222 11 123345566777765433211 11 0123443332111 25667
Q ss_pred HHHHHHHHHHhhhhcCChH------HHHHH----HHh----cccchhhc---c--CC--chhHHHHHHHHHHHHHhhChh
Q 004132 215 VLSAVKMILQQMELITSTD------VVRNL----CKK----MAPPLVTL---L--SA--EPEIQYVALRNINLIVQRRPT 273 (772)
Q Consensus 215 v~eaik~i~~~~~~i~~~~------~~~~l----~~~----~~~~L~~L---l--s~--~~~iryvaL~~l~~i~~~~p~ 273 (772)
.-.|+.++..+...--.+. .+..+ ... +.++...+ . .+ +.+..--..+.+..++..+..
T Consensus 251 ~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~ 330 (1049)
T 3m1i_C 251 RAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRA 330 (1049)
T ss_dssp HHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766543200111 11111 110 12211111 1 11 222211222333333333222
Q ss_pred hh------hhhc----c-eeeeccCCcHhHHHHHHHHHHHhccc--------ccHHHHHHHH----HHhhhhc-------
Q 004132 274 IL------AHEI----K-VFFCKYNDPIYVKMEKLEIMIKLASD--------RNIDQVLLEF----KEYATEV------- 323 (772)
Q Consensus 274 ~~------~~~~----~-if~~~~~d~~~Ik~~kL~lL~~L~n~--------~Nv~~Il~EL----~~y~~~~------- 323 (772)
++ .+++ . .+.|...++..|...+++....++.. .-...++.+| ...+...
T Consensus 331 ~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~ 410 (1049)
T 3m1i_C 331 LLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVE 410 (1049)
T ss_dssp HHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEE
T ss_pred HHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeee
Confidence 22 2221 1 12344455677888999998888761 1123333333 3322110
Q ss_pred ------------cH---HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc-----cc-hhHHHHHHHHHHHHHhCccc
Q 004132 324 ------------DV---DFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK-----VN-YVVQEAIIVIKDIFRRYPNT 382 (772)
Q Consensus 324 ------------d~---~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~-----~~-~v~~e~i~~l~~i~~~~p~~ 382 (772)
|. ..++.+-..+..++...+. .++..+++.+... .+ ...+.++..+..+.....+.
T Consensus 411 dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~---~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~ 487 (1049)
T 3m1i_C 411 NDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSED 487 (1049)
T ss_dssp CTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHH
T ss_pred CCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCch
Confidence 11 1222333445555544432 3444444444321 11 12334444555443222111
Q ss_pred -----HHHHHHHHHHhcccC--ChHH--HHHHHHHHHhhhccccCC----HHHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q 004132 383 -----YESIIATLCESLDTL--DEPE--AKASMIWIIGEYAERIDN----ADELLESFLESFPEEPAQVQLQLLTATVKL 449 (772)
Q Consensus 383 -----~~~ii~~L~~~l~~~--~~p~--a~~~~iwilGEy~~~i~~----~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl 449 (772)
...++..+....+.. .++. .+..++|++|.|++.+.. -+.+++.+++.+.+.++.||..+-.|+.++
T Consensus 488 ~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l 567 (1049)
T 3m1i_C 488 TEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKI 567 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 122333333222211 1233 344688999999986543 235566667777777899999999999999
Q ss_pred hhcCC
Q 004132 450 FLKKP 454 (772)
Q Consensus 450 ~~~~p 454 (772)
...++
T Consensus 568 ~~~~~ 572 (1049)
T 3m1i_C 568 VQKCK 572 (1049)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77543
No 75
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.98 E-value=0.01 Score=65.34 Aligned_cols=134 Identities=16% Similarity=0.228 Sum_probs=108.1
Q ss_pred hHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhh
Q 004132 11 FTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCL 90 (772)
Q Consensus 11 f~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L 90 (772)
|-.++..... +...|||+--++..|.+.-|++.--++|++..-|+|.+..||..|+|.|..++..+.+.-+.+-+.++|
T Consensus 31 y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 31 YQVILDGVKG-GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLL 109 (507)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHH
Confidence 5556664444 588999999999999999999999999999999999999999999999999997788999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 004132 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 91 ~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~ 150 (772)
...++--+...=.++..+++.+|... +...+..+.. .+..|+--++.-|.+-...
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~t----l~~lf~~i~~-~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGT----LGGLFSQILQ-GEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHH-SCHHHHHHHHHHHHHHGGG
T ss_pred hccchHHHHHHHHHHHHHHhcChHHH----HHHHHHHHcc-cchHHHHHHHHHHHHHHhh
Confidence 99998888777778888888888643 2222233333 4678887777777664433
No 76
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.93 E-value=0.024 Score=68.05 Aligned_cols=337 Identities=10% Similarity=0.040 Sum_probs=179.1
Q ss_pred hhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhc---CCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHH
Q 004132 89 CLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLIS---DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSK 165 (772)
Q Consensus 89 ~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~---D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~ 165 (772)
.+....++.|-.|+.+++-++..+.+. -+..|..-|. ..++.+.+.|+.+|.-|...... +.+..
T Consensus 366 Wl~k~~~~~k~sA~aSLGlIh~g~~~~-----gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~l 433 (963)
T 4ady_A 366 WLGKAQNWAKFTATASLGVIHKGNLLE-----GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDY 433 (963)
T ss_dssp HHHHCCTHHHHHHHHHHHHHTSSCTTT-----HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHH
T ss_pred hhhccchHHHHHHHHHhhhhccCchHH-----HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHH
Confidence 344456788999999999999877652 3567777776 56889999999999888654321 23444
Q ss_pred HHHHhhcCC--------hhHHHHHHHHHhc-c-ccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHH
Q 004132 166 LLTALNECT--------EWGQVFILDALSR-Y-KAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVV 235 (772)
Q Consensus 166 Ll~~L~~~~--------ew~qv~iL~~L~~-~-~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~ 235 (772)
|...|.+.+ +-.+.-..-.|.. | +..++ ++++.+.+.+.+.+.-+...|+-.+..++---.+.+.+
T Consensus 434 L~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai 509 (963)
T 4ady_A 434 LKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAI 509 (963)
T ss_dssp HHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHH
Confidence 444454333 3333333223332 2 22222 34455555555544422223333322210001233333
Q ss_pred HHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHH
Q 004132 236 RNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLL 314 (772)
Q Consensus 236 ~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~ 314 (772)
+.+... +.+ .+..+|-.+.-.|..+. +.+++-++.+++
T Consensus 510 ~~LL~~-------~~e~~~e~vrR~aalgLGll~----------------------------------~g~~e~~~~li~ 548 (963)
T 4ady_A 510 HDMFTY-------SQETQHGNITRGLAVGLALIN----------------------------------YGRQELADDLIT 548 (963)
T ss_dssp HHHHHH-------HHHCSCHHHHHHHHHHHHHHT----------------------------------TTCGGGGHHHHH
T ss_pred HHHHHH-------HhccCcHHHHHHHHHHHHhhh----------------------------------CCChHHHHHHHH
Confidence 322111 111 11122222333333333 345555555554
Q ss_pred HHHHhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-hccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHh
Q 004132 315 EFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK-IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCES 393 (772)
Q Consensus 315 EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~-~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~ 393 (772)
.|.+ +.|+..|.-++-++|-.- ...-....|+.|++.+. ...+.|++.++..+.-|.-..|+. +.++++.
T Consensus 549 ~L~~---~~dp~vRygaa~alglAy--aGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~----v~rlv~~ 619 (963)
T 4ady_A 549 KMLA---SDESLLRYGGAFTIALAY--AGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT----VPRIVQL 619 (963)
T ss_dssp HHHH---CSCHHHHHHHHHHHHHHT--TTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS----HHHHTTT
T ss_pred HHHh---CCCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH----HHHHHHH
Confidence 4432 223333333333332100 01111233443443333 233445555555555554444543 3444454
Q ss_pred cccCChHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC---ChHHHHHHHHHhhh
Q 004132 394 LDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE---GPQQMIQVVLNNAT 470 (772)
Q Consensus 394 l~~~~~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~---~~~~~v~~vl~~~~ 470 (772)
+.+-.+|.+|..++|.+|.-+---.+ .++++.+..-..+.+..||..++.|+..+.....+. +...+++.+.+...
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence 44445799999999999997632222 445554444457889999999999999999876543 36667777777644
Q ss_pred cCCCChHHHhhHHHHHHHhcCC
Q 004132 471 VETDNPDLRDRAYIYWRLLSTD 492 (772)
Q Consensus 471 ~~s~~~dvrdRA~~y~~Ll~~~ 492 (772)
....|++.|=.|++-.-|+..+
T Consensus 699 dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 699 NKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTG
T ss_pred cccccHHHHHHHHHHHHHHhcC
Confidence 3356788888888777777654
No 77
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.90 E-value=0.00015 Score=76.57 Aligned_cols=141 Identities=12% Similarity=0.142 Sum_probs=115.0
Q ss_pred hhHHHHH-hhcCCCcchHHHHHHHHHHhccCCCcHHHH-----HHHHHHhhcC-CCCHHHHhHHHHHhcCCC--hhhh--
Q 004132 10 LFTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAIL-----AVNTFVKDSQ-DPNPLIRALAVRTMGCIR--VDKI-- 78 (772)
Q Consensus 10 lf~~vi~-l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL-----~iNtl~kDl~-~~np~iralALrtl~~I~--~~ei-- 78 (772)
+++.++. ++.+++..+|.-+--.+.+++..+|+..-. ++..|.+-++ ++++.+|..|+.+|++|. .+..
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 4677888 999999999999999999999888764333 3445666665 468999999999999983 3332
Q ss_pred --HH-HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 004132 79 --TE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 79 --~~-~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~---~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~ 150 (772)
.+ ..++.+.++|.+.++.||+.|+.++..+...+++. +.+.|+++.|..||.+.|+.|+..|+.+|..|...
T Consensus 162 ~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 22 35778999999999999999999999998877764 34468999999999999999999999999988764
No 78
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.86 E-value=0.00023 Score=79.76 Aligned_cols=214 Identities=13% Similarity=0.099 Sum_probs=145.3
Q ss_pred CCHHHHhHHHHHhcCCC--hh---hhH---HHHHHHHHhhhCCCChHHHHHHHHHHHHHHhh-cc---ccccccchHHHH
Q 004132 58 PNPLIRALAVRTMGCIR--VD---KIT---EYLCDPLQRCLKDDDPYVRKTAAICVAKLYDI-NA---ELVEDRGFLESL 125 (772)
Q Consensus 58 ~np~iralALrtl~~I~--~~---ei~---~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~-~p---~~~~~~~~~~~L 125 (772)
.++.++-.|..+|.++. .+ ..+ .-.++.+.++|.+.++.||..|+.++..+... ++ +.+.+.|.++.|
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 45677777777776664 12 222 23588999999999999999999999998652 22 344456788999
Q ss_pred HHh-hcCCChhHHHHHHHHHHHHHhhCCCCcccc--cHHHHHHHHHHhhcCC--hh--HHHHHHHHHhcccc---CCHHH
Q 004132 126 KDL-ISDNNPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECT--EW--GQVFILDALSRYKA---ADARE 195 (772)
Q Consensus 126 ~~l-L~D~d~~Vv~~av~aL~eI~~~~~~~~~~l--~~~~~~~Ll~~L~~~~--ew--~qv~iL~~L~~~~~---~~~~e 195 (772)
.++ +...++.++.+|+.+|..++.........+ ....+..|+..|...+ +| .+.....+|+.... .+++.
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 371 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHH
Confidence 997 456788999999999998876321111111 2345666777765443 34 34444444443321 23332
Q ss_pred HH-----HHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHH-hcccchhhcc-CCchhHHHHHHHHHHHHH
Q 004132 196 AE-----NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK-KMAPPLVTLL-SAEPEIQYVALRNINLIV 268 (772)
Q Consensus 196 ~~-----~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~-~~~~~L~~Ll-s~~~~iryvaL~~l~~i~ 268 (772)
.. ..+..+..+|++.+..|.-+|+.++.++.. .+++....+.+ .++++|+.|+ ++++.+|-.|...|..|+
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS--SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 22 245677888999999999999999998641 24554444332 4678899998 478999999999999999
Q ss_pred hhChh
Q 004132 269 QRRPT 273 (772)
Q Consensus 269 ~~~p~ 273 (772)
..+|.
T Consensus 450 ~~~p~ 454 (458)
T 3nmz_A 450 ANRPA 454 (458)
T ss_dssp TCCSC
T ss_pred cCCHh
Confidence 88774
No 79
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.81 E-value=0.00061 Score=73.84 Aligned_cols=219 Identities=13% Similarity=0.123 Sum_probs=130.0
Q ss_pred ChhHHHHHHHHHHHHHhhCCCCcccc--cHHHHHHHHHHhhcCChhHHHHHHHHHhccccC-CHHHHH-----HHHHHHh
Q 004132 133 NPMVVANAVAALAEIEENSSRPIFEI--TSHTLSKLLTALNECTEWGQVFILDALSRYKAA-DAREAE-----NIVERVT 204 (772)
Q Consensus 133 d~~Vv~~av~aL~eI~~~~~~~~~~l--~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~-~~~e~~-----~il~~v~ 204 (772)
++.+..+|+.+|..++..+......+ ....+..|+..|...++-.|.....+|..+... +++... ..++.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 46778888888888875432222222 344578888888877888888777777766543 332222 2355666
Q ss_pred Hh-hcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH--HhcccchhhccCC-ch----hHHHHHHHHHHHHHhhChhhhh
Q 004132 205 PR-LQHANCAVVLSAVKMILQQMELITSTDVVRNLC--KKMAPPLVTLLSA-EP----EIQYVALRNINLIVQRRPTILA 276 (772)
Q Consensus 205 ~~-L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~--~~~~~~L~~Lls~-~~----~iryvaL~~l~~i~~~~p~~~~ 276 (772)
.. +++.+..+.-.|+.++.++... +++....+. ...+++|+.++.. ++ +++.-+...|..+... +
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~--~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~----~- 249 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAH--CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL----I- 249 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH----H-
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcc--ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh----c-
Confidence 65 4566778888888888876321 223223332 2456667777642 21 2444444444443320 0
Q ss_pred hhcceeeeccCCcHhHHHHHHHHHHHhcccccHHH-----HHHHHHHhhhhccHHHHHHHHHHHHHHHHhhhhhH-----
Q 004132 277 HEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQ-----VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA----- 346 (772)
Q Consensus 277 ~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~-----Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~~~~----- 346 (772)
. .+++|.+. .+.-|.+.+.+.+.+.++.++.+|+.++..-+...
T Consensus 250 ---------a-----------------~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~ 303 (354)
T 3nmw_A 250 ---------A-----------------TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD 303 (354)
T ss_dssp ---------T-----------------TCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred ---------c-----------------CCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 0 02222222 24455566667777888888888888874322111
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHH
Q 004132 347 ERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYE 384 (772)
Q Consensus 347 ~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~ 384 (772)
.-++..|+++++.+...+..++...+.++....|+.+.
T Consensus 304 ~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 304 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHh
Confidence 23477788888777777788888888888887777653
No 80
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=97.79 E-value=9.2e-05 Score=76.86 Aligned_cols=121 Identities=15% Similarity=0.151 Sum_probs=88.7
Q ss_pred CCCeEEEEEEeeeCCeeEEEEEEEecCCCCccccceeeccCc---cCcccCCCCCCC-cCCCCCeeeEEEeeeecCCCCC
Q 004132 644 GQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNT---FGLAAGGALQVP-QLQPGTSGRTLLPMVLFQNMSA 719 (772)
Q Consensus 644 ~~gl~i~~~~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~---fgl~~~~~~~~~-~l~p~~~~~~~~~l~~~~~~~~ 719 (772)
..-++|...-+.+++...+.+.|.|++..+|++|.+++..+. .++.... ..+| .++||+++...+-+.+..++..
T Consensus 54 D~~IQIg~kse~~~~~g~i~L~~gNKs~~~it~f~~~i~~~~~~~~~l~~~~-~~~~~tI~p~~q~qq~i~v~~~~pF~~ 132 (273)
T 3hs8_A 54 NQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQT-KPVDPTVDGGAQVQQVVNIECISDFTE 132 (273)
T ss_dssp CSSEEEEEEEEEETTEEEEEEEEEECSSSCBBSCCCEEECCTTHHHHEEEEE-CCCCSCBCTTCEEEEEEEEEECSCCCC
T ss_pred CCcEEEEEEEEEeCceEEEEEEEEcCCCCcceeEEEEEECCCCCCcceEEEe-cCCCCeECCCCEEEEEEEEEEcccccC
Confidence 445799999898999999999999999999999999886532 2333221 1334 8999999999999999998854
Q ss_pred CCCCcchhhhhhcCCC-CeEEEeeccccchhcccCCCCChhhHHHhccccc
Q 004132 720 GPPSSLLQVAVKNNQQ-PVWYFNDKISLHVLFTEDGRMERGSFLEVKTCSF 769 (772)
Q Consensus 720 ~~~~~~lqvAik~n~~-~v~yf~~~~p~~~l~~~~g~~~~~~F~~~W~~~~ 769 (772)
.+.|.+..+.+.. .-+.+..|+-+...+ ....|+.++|.+.|+.+.
T Consensus 133 ---~P~l~isf~~~g~~~~~~LkLPi~~~kf~-~p~~~~~~~F~~rWkql~ 179 (273)
T 3hs8_A 133 ---APVLNIQFRYGGTFQNVSVKLPITLNKFF-QPTEMASQDFFQRWKQLS 179 (273)
T ss_dssp ---CCEEEEEEEETTEEEEEEEECCCCGGGGE-EECCCCHHHHHHHHHHCC
T ss_pred ---CCEEEEEEEECCeEEEEEEecceehhhee-ccccCCHHHHHHHHHhcC
Confidence 4456666665432 134444555544444 556699999999999876
No 81
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=97.78 E-value=6.9e-05 Score=76.90 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=90.5
Q ss_pred CCCCeEEEEEEeeeCCeeEEEEEEEecCCCCccccceeeccCc---cCcccCCCCCCC-cCCCCCeeeEEEeeeecCCCC
Q 004132 643 TGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNT---FGLAAGGALQVP-QLQPGTSGRTLLPMVLFQNMS 718 (772)
Q Consensus 643 ~~~gl~i~~~~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~---fgl~~~~~~~~~-~l~p~~~~~~~~~l~~~~~~~ 718 (772)
+..=|+|...-+.+++...+.+.+.|++..++++|.+++.... .++..... .++ .++||+++++.+-+.+.+++.
T Consensus 27 Ed~~iQIg~kse~~~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~-~~~~~I~~~~q~qq~i~v~~~~~f~ 105 (247)
T 1kyf_A 27 ENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTK-PVDPTVDGGAQVQQVVNIECISDFT 105 (247)
T ss_dssp ECSSEEEEEEEEEETTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEEC-CCCSCBCTTCEEEEEEEEEECSCCC
T ss_pred ECCCEEEEEEEEEeCCeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecC-CCCceeCCCcEEEEEEEEEEccccC
Confidence 3445899998888999899999999999999999999885521 12332211 234 799999999999999999886
Q ss_pred CCCCCcchhhhhhcCCC-CeEEEeeccccchhcccCCCCChhhHHHhcccccc
Q 004132 719 AGPPSSLLQVAVKNNQQ-PVWYFNDKISLHVLFTEDGRMERGSFLEVKTCSFV 770 (772)
Q Consensus 719 ~~~~~~~lqvAik~n~~-~v~yf~~~~p~~~l~~~~g~~~~~~F~~~W~~~~~ 770 (772)
+ .+.+.+..+.+.. .-+.+..|+.++.+| +...|+.++|.++|+.+..
T Consensus 106 ~---~P~l~isf~~~g~~~~~~LkLPi~l~KF~-~p~~~~~~~Ff~rW~~l~~ 154 (247)
T 1kyf_A 106 E---APVLNIQFRYGGTFQNVSVKLPITLNKFF-QPTEMASQDFFQRWKQLSN 154 (247)
T ss_dssp C---CCEEEEEEEETTEEEEEEEECCCCGGGGE-EECCCCHHHHHHHHTTCCS
T ss_pred C---CCEEEEEEEECCeeeEEEEecCcEEEEee-cCCcCCHHHHHHHHHhccC
Confidence 5 3466666665543 134555566666555 5566999999999998853
No 82
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.75 E-value=0.049 Score=66.52 Aligned_cols=434 Identities=13% Similarity=0.080 Sum_probs=221.8
Q ss_pred HHHHhcCCChhhhHHHHHHHHHhhh----CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh---cCCChhHHH
Q 004132 66 AVRTMGCIRVDKITEYLCDPLQRCL----KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI---SDNNPMVVA 138 (772)
Q Consensus 66 ALrtl~~I~~~ei~~~l~~~v~~~L----~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL---~D~d~~Vv~ 138 (772)
.|+.++.+...++.+.+.+.+...+ .+.++..|..|+.|++.+....++... .+++.+...+ .+.++.|..
T Consensus 430 ~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~--~~l~~l~~~l~~l~~~~~~vr~ 507 (963)
T 2x19_B 430 TLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYS--DVVPGLIGLIPRISISNVQLAD 507 (963)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCC--SHHHHHHHHGGGSCCCSHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhh--HHHHHHHHHHHhCCCCcHHHHH
Confidence 4566666666778888888888888 778999999999999999876544222 3444444333 456888998
Q ss_pred HHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCH----HHHHHHHHHHhHhhcC--CCH
Q 004132 139 NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADA----REAENIVERVTPRLQH--ANC 212 (772)
Q Consensus 139 ~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~----~e~~~il~~v~~~L~~--~n~ 212 (772)
.++.++...++.-.. ......+.+.+|++.|.+ +=.+.....+|.+++..-. .....+++.+...+++ .+.
T Consensus 508 ~~~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~ 584 (963)
T 2x19_B 508 TVMFTIGALSEWLAD-HPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKT 584 (963)
T ss_dssp HHHHHHHHTHHHHHH-CHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCh
Confidence 888888876643110 012333456677777754 4455555555554432111 1234566666555553 233
Q ss_pred HHH---HHHHHHHHHhhhhcCChHHHHHHHHhcccchhhcc----CC--chhHHH---HHHHHHHHHHhhChhhhhhhcc
Q 004132 213 AVV---LSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLL----SA--EPEIQY---VALRNINLIVQRRPTILAHEIK 280 (772)
Q Consensus 213 aVv---~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Ll----s~--~~~iry---vaL~~l~~i~~~~p~~~~~~~~ 280 (772)
.+. ++|+-.+.. ..+ ++....+...+.+++...+ ++ +++.+. ..+++|..+.+.-.........
T Consensus 585 ~~~~~~~eai~~i~~---~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~ 660 (963)
T 2x19_B 585 SQCMWLMQALGFLLS---ALQ-VEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDH 660 (963)
T ss_dssp HHHHHHHHHHHHHHT---TSC-HHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---
T ss_pred HHHHHHHHHHHHHHh---cCC-HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 444 555544442 222 2333334444444444322 21 344333 3455555544432110000000
Q ss_pred eeee--cc----CCcHhHHHHHHHHHHHhcccccHHHHHHHHH-HhhhhccHHHHHHHHHHHHHHHHhhhhh----HHHH
Q 004132 281 VFFC--KY----NDPIYVKMEKLEIMIKLASDRNIDQVLLEFK-EYATEVDVDFVRKAVRAIGRCAIKLERA----AERC 349 (772)
Q Consensus 281 if~~--~~----~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~-~y~~~~d~~~~~~~v~aIg~la~k~~~~----~~~~ 349 (772)
--.. .. ...+..+ +. +.+-.++.+++ .|. .+.+..+.+.+.++.++..+... ....
T Consensus 661 ~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~l~~~~--~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~ 727 (963)
T 2x19_B 661 EGPELRKLPVPQGPNPVVV-----VL------QQVFQLIQKVLSKWL--NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQL 727 (963)
T ss_dssp ------------CCCHHHH-----HH------HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHH
T ss_pred cccccccCCCCCCCCchHH-----HH------HHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHHHhhcccccccHHHH
Confidence 0000 00 0001000 00 00111111221 222 24466777777777776654433 2333
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHH--hCcc-c---HHHHHHHHHH----hc-ccC-ChHHHHHHHHHHHhhhcccc
Q 004132 350 ISVLLELIKIKVNYVVQEAIIVIKDIFR--RYPN-T---YESIIATLCE----SL-DTL-DEPEAKASMIWIIGEYAERI 417 (772)
Q Consensus 350 vd~Ll~ll~~~~~~v~~e~i~~l~~i~~--~~p~-~---~~~ii~~L~~----~l-~~~-~~p~a~~~~iwilGEy~~~i 417 (772)
++.++.-..... ....+..+..+++ +..+ . ...++..+++ .+ +++ ++|+.+....-+++......
T Consensus 728 ~~~l~~~~~~~~---~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~ 804 (963)
T 2x19_B 728 CEMLGRMYSTIP---QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRK 804 (963)
T ss_dssp HHHHHHHHHHSC---CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCC---ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhC
Confidence 444444333211 1234445555655 2221 1 1122222222 22 233 35888777766666644221
Q ss_pred -------CC-HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCC---------CChHHHHHHHHHhhhcCCCChHHHh
Q 004132 418 -------DN-ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT---------EGPQQMIQVVLNNATVETDNPDLRD 480 (772)
Q Consensus 418 -------~~-~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~---------~~~~~~v~~vl~~~~~~s~~~dvrd 480 (772)
+. -..++..++..+...+..+....+..+.++...... .....++..++...+.......+.+
T Consensus 805 ~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 884 (963)
T 2x19_B 805 PDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDC 884 (963)
T ss_dssp GGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHH
T ss_pred cHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHH
Confidence 11 356777777778878888888888888887755331 1145566677765554445567777
Q ss_pred hHHHHHHHhcCCHHHHHhhhccC--CCCCCCCCCCCChHHHHHHHHhc
Q 004132 481 RAYIYWRLLSTDPEAAKDVVLAE--KPVISDDSNQLDPSLLDELLANI 526 (772)
Q Consensus 481 RA~~y~~Ll~~~~~~~~~ivl~~--~p~~~~~~~~~~~~~l~~l~~~~ 526 (772)
-|...+.|....++.+++-+..- .+.+. ..++.++..++++..+
T Consensus 885 ~~~il~~l~~~~~~~~~~~l~~~l~~~~~p--~~~~~~~~~~~f~~~l 930 (963)
T 2x19_B 885 FADILFALNKHCFSLLSMWIKEALQPPGFP--SARLSPEQKDTFSQQI 930 (963)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHTCSTTSS--CTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHChHHHHHHHHHHhcccCCC--CCcCCHHHHHHHHHHH
Confidence 67666677666676555443221 11111 2356777788887765
No 83
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.73 E-value=0.014 Score=71.53 Aligned_cols=422 Identities=9% Similarity=0.048 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHHHhhccccccccchHHHHHHhhcC-----CChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHh
Q 004132 96 YVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD-----NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL 170 (772)
Q Consensus 96 yVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D-----~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L 170 (772)
-.||.|+.++..++...++.+-. .+.+.+...|.. .+...+-+|+.++..|.+.-....-......+. ++..+
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l 513 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEI 513 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHS
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhc
Confidence 47888888888888877743221 245566666643 567788888888888865422111111122222 44444
Q ss_pred h--cCChhHHHHHHHHHhcccc---CCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccc
Q 004132 171 N--ECTEWGQVFILDALSRYKA---ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPP 245 (772)
Q Consensus 171 ~--~~~ew~qv~iL~~L~~~~~---~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~ 245 (772)
. +.++..+...+.++.+|.. .+++-...+++.+...+ + +.|.-.|+.++..+.... ...+...+..+...
T Consensus 514 ~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~ 588 (971)
T 2x1g_F 514 PYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNA 588 (971)
T ss_dssp CTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHH
Confidence 4 3477888888888888863 22334556677777666 2 567777777777654332 22233333334444
Q ss_pred hhhccCC---chhHHHHHHHHHHHHHhhCh-hh----hh----hhccee-eeccCC--cHhHH---HHHHHHHHHhcc--
Q 004132 246 LVTLLSA---EPEIQYVALRNINLIVQRRP-TI----LA----HEIKVF-FCKYND--PIYVK---MEKLEIMIKLAS-- 305 (772)
Q Consensus 246 L~~Lls~---~~~iryvaL~~l~~i~~~~p-~~----~~----~~~~if-~~~~~d--~~~Ik---~~kL~lL~~L~n-- 305 (772)
|..++++ +.+.+..++++|..++..-| +- +. +.+..+ .+..++ +..-+ ...++.|..+..
T Consensus 589 l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l 668 (971)
T 2x1g_F 589 CHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSL 668 (971)
T ss_dssp HHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhc
Confidence 4555543 56889999999999887533 21 11 111111 111121 11122 334444443322
Q ss_pred -------------cccHHHHHHHHHH----hhhh--ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccc-hhH
Q 004132 306 -------------DRNIDQVLLEFKE----YATE--VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVN-YVV 365 (772)
Q Consensus 306 -------------~~Nv~~Il~EL~~----y~~~--~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~-~v~ 365 (772)
.+.+..++.++.. -+.. .+.++.+.+.+.++.++..+.....-++..+++.+...-. .-.
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~ 748 (971)
T 2x1g_F 669 NTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC 748 (971)
T ss_dssp TC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC
T ss_pred CCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc
Confidence 1122222332322 2222 2678899999999998876544433345544444432211 101
Q ss_pred HHHHHHHHHHHHhCcc---cH-------HHHHHHHHHhcccC------ChHHHHHHHHHHHhhhcccc-------CC-HH
Q 004132 366 QEAIIVIKDIFRRYPN---TY-------ESIIATLCESLDTL------DEPEAKASMIWIIGEYAERI-------DN-AD 421 (772)
Q Consensus 366 ~e~i~~l~~i~~~~p~---~~-------~~ii~~L~~~l~~~------~~p~a~~~~iwilGEy~~~i-------~~-~~ 421 (772)
..++..+..+++.+.. .. ..++....+.+... +.|+.+....-+++.+.... +. -.
T Consensus 749 ~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~ 828 (971)
T 2x1g_F 749 APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYD 828 (971)
T ss_dssp HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHH
Confidence 2356677777776532 11 11222223333332 25677777766666544221 11 34
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCC---------ChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhcCC
Q 004132 422 ELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTE---------GPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTD 492 (772)
Q Consensus 422 ~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~---------~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~~~ 492 (772)
.++...+..+...+..+....++.+.++....+.. ....++..++...........+.+-|...++|....
T Consensus 829 ~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~ 908 (971)
T 2x1g_F 829 RLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKY 908 (971)
T ss_dssp HHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHC
Confidence 45555555444344434444555555543332211 012344445443332334455667777778887766
Q ss_pred HHHHHhhhcc--CCCCCCCCCCCCChHHHHHHHHhc
Q 004132 493 PEAAKDVVLA--EKPVISDDSNQLDPSLLDELLANI 526 (772)
Q Consensus 493 ~~~~~~ivl~--~~p~~~~~~~~~~~~~l~~l~~~~ 526 (772)
++.++.-+-. ..|.+. ...+.++..++++..+
T Consensus 909 ~~~~~~~l~~~l~~~~~p--~~~~~~~~~~~f~~~l 942 (971)
T 2x1g_F 909 AAEMAVWMKSLMSTPNFP--TQLITDADKTRYTALI 942 (971)
T ss_dssp HHHHHHHHHHHHTSSSCS--CSSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcccCCC--CCcCCHHHHHHHHHHH
Confidence 6655443321 112121 2345666666666554
No 84
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.70 E-value=0.003 Score=63.03 Aligned_cols=178 Identities=12% Similarity=0.083 Sum_probs=128.3
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHH
Q 004132 309 IDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLE---RAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYES 385 (772)
Q Consensus 309 v~~Il~EL~~y~~~~d~~~~~~~v~aIg~la~k~~---~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ 385 (772)
++.+++.+.+-+.+.|.-+.-+++++++.+-...+ ..+....+++.++++.+.+-...++...+..+ +--.....
T Consensus 73 ~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~~~~~~ 150 (265)
T 3b2a_A 73 LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPLEDSKL 150 (265)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBSCCCHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--CcccchHH
Confidence 45566666677788888899999999999998765 45667788999999977777888888888777 33344567
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHhhhccccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 004132 386 IIATLCESLDTLDEPEAKASMIWIIGEYAERIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMI 462 (772)
Q Consensus 386 ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~~---~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v 462 (772)
++..+...+ .-.+++.+++.+-.+-|-+.+..+ ..++++.+-+-...+++.++--.|.++-+++.+.-.+...+-+
T Consensus 151 V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~ 229 (265)
T 3b2a_A 151 VRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL 229 (265)
T ss_dssp HHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH
T ss_pred HHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH
Confidence 778888878 447889998888888777665533 3455555555556689999999999999998764222255555
Q ss_pred HHHHHh----hhcCCCChHHHhhHHHHHHHhc
Q 004132 463 QVVLNN----ATVETDNPDLRDRAYIYWRLLS 490 (772)
Q Consensus 463 ~~vl~~----~~~~s~~~dvrdRA~~y~~Ll~ 490 (772)
.+++.. ++- -..|.+|+||+..-.++.
T Consensus 230 ~~~~~~v~~l~~~-~~~~~~~~ka~~v~~~le 260 (265)
T 3b2a_A 230 LKISRIVDGLVYR-EGAPIIRLKAKKVSDLID 260 (265)
T ss_dssp HHHHHHHHHGGGC-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCChhHHHHHHHHHHHHH
Confidence 555443 322 256999999987766553
No 85
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.68 E-value=0.075 Score=65.17 Aligned_cols=426 Identities=11% Similarity=0.074 Sum_probs=216.3
Q ss_pred CCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC----Chh-------hhHHHHHHHHHh
Q 004132 20 TENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RVD-------KITEYLCDPLQR 88 (772)
Q Consensus 20 s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I----~~~-------ei~~~l~~~v~~ 88 (772)
+.|.+.|+-++-++..+-+. ||.-..+..-+.+ -...++.+|-.|+.+|-+. ..+ .+-+.+...+.+
T Consensus 19 ~sd~~~r~~A~~~L~~~q~s-p~aw~~~~~iL~~-~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~ 96 (980)
T 3ibv_A 19 SVGPIIKQQATDFIGSLRSS-STGWKICHEIFSE-KTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKE 96 (980)
T ss_dssp TSCHHHHHHHHHHHHHHHHS-TTHHHHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC-hhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHH
Confidence 34788999999999887554 7754444443332 1223899999998887642 221 222344444444
Q ss_pred hh-CCCChHHHHHHHHHHHHHHhh-ccccccccchHHHHHHhhcCCCh-hHHHHHHHHHHHHHhhCCCCcc---------
Q 004132 89 CL-KDDDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNP-MVVANAVAALAEIEENSSRPIF--------- 156 (772)
Q Consensus 89 ~L-~d~~pyVRK~Aa~~l~kl~~~-~p~~~~~~~~~~~L~~lL~D~d~-~Vv~~av~aL~eI~~~~~~~~~--------- 156 (772)
.- .+..+|||.|.+.++..++.. .|+.-++ |++.+..++...++ .++...+..|..|.+.-....+
T Consensus 97 ~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~--~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r 174 (980)
T 3ibv_A 97 LSFLDEPAYISNAVQHLLTLLFLQLYPSNWND--FFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQK 174 (980)
T ss_dssp CCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHhCcccCch--HHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhh
Confidence 21 135789999999999999876 5665543 77777777764444 3333444455533332100000
Q ss_pred -----cccHHH-----HHHHHHHhhc----CChhHHHHHHHHHhccccCCHHH---HHHHHHHHhHhhcCCCHHHHHHHH
Q 004132 157 -----EITSHT-----LSKLLTALNE----CTEWGQVFILDALSRYKAADARE---AENIVERVTPRLQHANCAVVLSAV 219 (772)
Q Consensus 157 -----~l~~~~-----~~~Ll~~L~~----~~ew~qv~iL~~L~~~~~~~~~e---~~~il~~v~~~L~~~n~aVv~eai 219 (772)
+..... +...+..|.. .++=.....|++|..|...-+-. ...+++.+...|.. +.+.-.|+
T Consensus 175 ~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ 252 (980)
T 3ibv_A 175 DNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAAC 252 (980)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHH
T ss_pred hHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHH
Confidence 000000 1111222222 34445567888888887652211 13566666666654 67888888
Q ss_pred HHHHHhhhhcCChHHHHHHHHh--cccchhhcc--CCchhHHHHHHH-------HHHHHHhhCh------------hhhh
Q 004132 220 KMILQQMELITSTDVVRNLCKK--MAPPLVTLL--SAEPEIQYVALR-------NINLIVQRRP------------TILA 276 (772)
Q Consensus 220 k~i~~~~~~i~~~~~~~~l~~~--~~~~L~~Ll--s~~~~iryvaL~-------~l~~i~~~~p------------~~~~ 276 (772)
.|+..+...-.+++....++.. +.+.+..+. ..|.++.--.-+ .+..+ ...| ..+.
T Consensus 253 ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~ 331 (980)
T 3ibv_A 253 ETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLY 331 (980)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHH
Confidence 8887765432233322222211 111111222 234553211111 11222 2233 2233
Q ss_pred hhcc-eeeeccCCcHhHHHHHHHHHHHhcc-----------cccHHHHHHHHHH-------hhhh----c----c--H--
Q 004132 277 HEIK-VFFCKYNDPIYVKMEKLEIMIKLAS-----------DRNIDQVLLEFKE-------YATE----V----D--V-- 325 (772)
Q Consensus 277 ~~~~-if~~~~~d~~~Ik~~kL~lL~~L~n-----------~~Nv~~Il~EL~~-------y~~~----~----d--~-- 325 (772)
..+. ++.|..+++..|-..+++.+..+.. ..-...++..|+. |=.+ . | .
T Consensus 332 ~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F 411 (980)
T 3ibv_A 332 NLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEF 411 (980)
T ss_dssp HTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHH
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHH
Confidence 3333 3456655666677777777666542 1122344444442 2111 1 1 1
Q ss_pred -HHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHhhcc------ch-hHHHHHHHHHHHHHhCcc----------cH
Q 004132 326 -DFVRKAVRAIGRCAIKLERAAERCIS----VLLELIKIKV------NY-VVQEAIIVIKDIFRRYPN----------TY 383 (772)
Q Consensus 326 -~~~~~~v~aIg~la~k~~~~~~~~vd----~Ll~ll~~~~------~~-v~~e~i~~l~~i~~~~p~----------~~ 383 (772)
+||+++-..+..|+.-.+ +.|++ .+..++.... +. ..+.++..+..+-...++ ..
T Consensus 412 ~e~Rk~l~~l~d~~~~l~~---~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~l 488 (980)
T 3ibv_A 412 QEMRKKLKIFQDTINSIDS---SLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSP 488 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCB
T ss_pred HHHHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchh
Confidence 355554422222333222 33444 5544443321 11 122222332222111111 11
Q ss_pred HHHHHHHHHhcc----cCChHHHHHHHHHHHhhhccccCC----HHHHHHHHhh--hCCCCCHHHHHHHHHHHHHHhhcC
Q 004132 384 ESIIATLCESLD----TLDEPEAKASMIWIIGEYAERIDN----ADELLESFLE--SFPEEPAQVQLQLLTATVKLFLKK 453 (772)
Q Consensus 384 ~~ii~~L~~~l~----~~~~p~a~~~~iwilGEy~~~i~~----~~~~L~~l~~--~f~~e~~~vq~~lLta~~Kl~~~~ 453 (772)
..++..+...++ ....|.++...+|++|.|++.+.. -+.+|..++. .+.+.+..||..+-.|+.++.-..
T Consensus 489 p~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 489 TVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp CHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 234444444432 235788999999999999998754 3567777777 666667789988888888876655
Q ss_pred CC
Q 004132 454 PT 455 (772)
Q Consensus 454 p~ 455 (772)
..
T Consensus 569 ~~ 570 (980)
T 3ibv_A 569 KK 570 (980)
T ss_dssp TT
T ss_pred hH
Confidence 43
No 86
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.63 E-value=0.0066 Score=69.60 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=93.1
Q ss_pred hhcCCCcchHHHHHHHHHHhccCCCcH-----HHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhh--------------
Q 004132 17 CMQTENLELKKLVYLYLINYAKSQPDL-----AILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDK-------------- 77 (772)
Q Consensus 17 l~~s~~~~lKrl~YL~l~~~~~~~~dl-----~lL~iNtl~kDl~~~np~iralALrtl~~I~~~e-------------- 77 (772)
+-.+.-++.||-+-+.+.-+++..++. .--.++++++|-. |..+...+|.||..+-.++
T Consensus 30 l~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~--D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~ 107 (651)
T 3grl_A 30 VASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRS--DSEIIGYALDTLYNIISNDEEEEVEENSTRQSE 107 (651)
T ss_dssp HHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTT--CHHHHHHHHHHHHHHHCCC--------------
T ss_pred HhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccc--cHHHHHHHHHHHHHHhCCCCcccccccccccch
Confidence 445677899999999999999998875 4456788999953 4455556888886542211
Q ss_pred -----hHHH------HHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc-----ccchHHHHHHhhcCCChhHHHHHH
Q 004132 78 -----ITEY------LCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE-----DRGFLESLKDLISDNNPMVVANAV 141 (772)
Q Consensus 78 -----i~~~------l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~-----~~~~~~~L~~lL~D~d~~Vv~~av 141 (772)
.++. -++.+..+|.+.+-|||-.|+.++.-+....|+.+. .++=++.|.++|+|+.-.++..|+
T Consensus 108 ~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneal 187 (651)
T 3grl_A 108 DLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGV 187 (651)
T ss_dssp CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHH
Confidence 1222 245667777788888888888888877777776332 233467777788877777777777
Q ss_pred HHHHHHHhhC
Q 004132 142 AALAEIEENS 151 (772)
Q Consensus 142 ~aL~eI~~~~ 151 (772)
.+|.++...+
T Consensus 188 lLL~~Lt~~n 197 (651)
T 3grl_A 188 LLLQALTRSN 197 (651)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 7787777654
No 87
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.59 E-value=0.016 Score=55.65 Aligned_cols=197 Identities=14% Similarity=0.152 Sum_probs=143.0
Q ss_pred eccCCcHhHHHHHHHHHHHhcc--cccHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc
Q 004132 284 CKYNDPIYVKMEKLEIMIKLAS--DRNIDQVLLEFKEYATE-VDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360 (772)
Q Consensus 284 ~~~~d~~~Ik~~kL~lL~~L~n--~~Nv~~Il~EL~~y~~~-~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~ 360 (772)
.+.||-+.|+.-+|.++..++. ++-++.++++|.-.++. .....-.++-+++|.+|.--|.-....|..++.=...+
T Consensus 40 ~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrig 119 (253)
T 2db0_A 40 LLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIG 119 (253)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcC
Confidence 3455558899999999988864 57788889999887654 34667788889999999877776677777777766666
Q ss_pred cchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhcccc-CCHHHHHHHHhhhCCCCCHHHH
Q 004132 361 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI-DNADELLESFLESFPEEPAQVQ 439 (772)
Q Consensus 361 ~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i-~~~~~~L~~l~~~f~~e~~~vq 439 (772)
.+.+.=..-.++..|.+.||+....++..+...+.+- +..-|.++.-++|-.|+-. ....-.|..+..-+.+.+..||
T Consensus 120 d~kikIn~~yaLeeIaranP~l~~~v~rdi~smltsk-d~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVR 198 (253)
T 2db0_A 120 DEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSK-NREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVR 198 (253)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS-SHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHH
T ss_pred CccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhh
Confidence 6666666777899999999999888888888777753 3334555555555444311 1112245556666778899999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHH
Q 004132 440 LQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIY 485 (772)
Q Consensus 440 ~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y 485 (772)
.....++.+++..+|. .++.+...++.. ++.+.+|+-...+-
T Consensus 199 aSaVEtL~~lA~~npk--lRkii~~kl~e~--~D~S~lv~~~V~eg 240 (253)
T 2db0_A 199 ASAVEALVHLATLNDK--LRKVVIKRLEEL--NDTSSLVNKTVKEG 240 (253)
T ss_dssp HHHHHHHHHHHTSCHH--HHHHHHHHHHHC--CCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHH--HHHHHHHHHHHh--cCcHHHHHHHHHHH
Confidence 9999999999999885 888888888753 44555666555443
No 88
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.56 E-value=0.17 Score=63.52 Aligned_cols=139 Identities=9% Similarity=0.163 Sum_probs=87.5
Q ss_pred CCccchhHHHHHh---hcCC--CcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-----
Q 004132 5 KDVSSLFTDVVNC---MQTE--NLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR----- 74 (772)
Q Consensus 5 ~Dvs~lf~~vi~l---~~s~--~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~----- 74 (772)
.++.....++.++ +.++ +...|+-+.-++..+. .+|+....+...+. -.+.++.+|-.|+.+|-+..
T Consensus 4 ~~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~-~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~ 80 (1204)
T 3a6p_A 4 DQVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFK-EKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWN 80 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH-HHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred hhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH-hCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 4555555545443 3343 5567998998888764 44554444444443 35678999999987765431
Q ss_pred --hhhhHHHHHHHHHhhhC-------CCChHHHHHHHHHHHHHHhhc-cccccccchHHHHHHhhcCCChhHHHHHHHHH
Q 004132 75 --VDKITEYLCDPLQRCLK-------DDDPYVRKTAAICVAKLYDIN-AELVEDRGFLESLKDLISDNNPMVVANAVAAL 144 (772)
Q Consensus 75 --~~ei~~~l~~~v~~~L~-------d~~pyVRK~Aa~~l~kl~~~~-p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL 144 (772)
.++-.+.+-..+.+.+. +..++||.+++.++..+.+.+ |+.-+ ++++.|..++.. ++...-+++..|
T Consensus 81 ~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp--~ll~~L~~~~~~-~~~~~e~~L~iL 157 (1204)
T 3a6p_A 81 GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWP--DMLIELDTLSKQ-GETQTELVMFIL 157 (1204)
T ss_dssp GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccch--HHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 23333344334444433 256999999999999998764 65444 377777777765 555566677777
Q ss_pred HHHHh
Q 004132 145 AEIEE 149 (772)
Q Consensus 145 ~eI~~ 149 (772)
..+++
T Consensus 158 ~~L~E 162 (1204)
T 3a6p_A 158 LRLAE 162 (1204)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 89
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.51 E-value=0.077 Score=65.05 Aligned_cols=204 Identities=15% Similarity=0.126 Sum_probs=117.4
Q ss_pred CCHHHHhHHHHHhcCCC-hhhhHHHHHHHHHhhhCCC---ChHHHHHHHHHHHHHHhhcccc-c--cccchHHHHHHhhc
Q 004132 58 PNPLIRALAVRTMGCIR-VDKITEYLCDPLQRCLKDD---DPYVRKTAAICVAKLYDINAEL-V--EDRGFLESLKDLIS 130 (772)
Q Consensus 58 ~np~iralALrtl~~I~-~~ei~~~l~~~v~~~L~d~---~pyVRK~Aa~~l~kl~~~~p~~-~--~~~~~~~~L~~lL~ 130 (772)
+++..|..|-..|..+. .++.... ...+|.++ ++.||--|+..+-...+.-|+. + +...+.+.|..++.
T Consensus 20 sd~~~r~~A~~~L~~~q~sp~aw~~----~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~ 95 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSSSTGWKI----CHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIK 95 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHSTTHHHH----HHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcChhHHHH----HHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHH
Confidence 47889999999998886 3444444 33445443 7999999999988776622221 0 11124444444443
Q ss_pred -----CCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCCh-hHHHHHHHHHhccc--------cCCHHH-
Q 004132 131 -----DNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTE-WGQVFILDALSRYK--------AADARE- 195 (772)
Q Consensus 131 -----D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~e-w~qv~iL~~L~~~~--------~~~~~e- 195 (772)
+..+.|+.....++.+|.....+..|.- .+..|+..+...++ .....+|++|.... +.+.++
T Consensus 96 ~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~---~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~ 172 (980)
T 3ibv_A 96 ELSFLDEPAYISNAVQHLLTLLFLQLYPSNWND---FFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQI 172 (980)
T ss_dssp HCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT---HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHHHhCcccCch---HHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHH
Confidence 2345666666677777776653344533 34445554443333 56667778776211 112110
Q ss_pred --------------HHHHHHHHhHhh----cCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccCCchhHH
Q 004132 196 --------------AENIVERVTPRL----QHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQ 257 (772)
Q Consensus 196 --------------~~~il~~v~~~L----~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~~~~ir 257 (772)
...+.+.+...| .+.++.++-.+.+++..|...+. ...+-. ..+.+.+..+++ ++++|
T Consensus 173 ~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~--~~ll~~l~~~L~-~~~~r 248 (980)
T 3ibv_A 173 QKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVN--EPCMNLLYSFLQ-IEELR 248 (980)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHC--HHHHHHHHHHTT-SHHHH
T ss_pred hhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhc--chHHHHHHHHcC-ChHHH
Confidence 111233333333 34678888888888888766542 222210 123333344444 48999
Q ss_pred HHHHHHHHHHHhhCh
Q 004132 258 YVALRNINLIVQRRP 272 (772)
Q Consensus 258 yvaL~~l~~i~~~~p 272 (772)
-.|+++|..|+.+..
T Consensus 249 ~~A~ecL~ei~~k~~ 263 (980)
T 3ibv_A 249 CAACETMTEIVNKKM 263 (980)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999998753
No 90
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.47 E-value=0.042 Score=67.65 Aligned_cols=107 Identities=10% Similarity=0.095 Sum_probs=78.6
Q ss_pred cHHHHHHHHHHhhcCC--CCHHHHhHHHHHhcCCC---h----hhhHHHHHHHHHhhhC-----CCChHHHHHHHHHHHH
Q 004132 42 DLAILAVNTFVKDSQD--PNPLIRALAVRTMGCIR---V----DKITEYLCDPLQRCLK-----DDDPYVRKTAAICVAK 107 (772)
Q Consensus 42 dl~lL~iNtl~kDl~~--~np~iralALrtl~~I~---~----~ei~~~l~~~v~~~L~-----d~~pyVRK~Aa~~l~k 107 (772)
|+.-...+.+.+-+.+ .+...|-.|+-++|+|. . ....+.+++.+..++. |..+.||.+++.++++
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 5555566777766654 57888888888888874 2 2345566777777776 4778899999999988
Q ss_pred HHh---hccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 004132 108 LYD---INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 108 l~~---~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~ 150 (772)
..+ .+|+.++. .+..|-..+.|++|.|..+|+.++..|++.
T Consensus 527 y~~wl~~~~~~L~~--vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 527 YPRFLKAHWNFLRT--VILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp CHHHHHHCHHHHHH--HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHH--HHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 654 46666553 556666677889999999999999999875
No 91
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=97.42 E-value=0.00023 Score=66.74 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=52.3
Q ss_pred CCCCCCeEEEEEEeee---CCeeEEEEEEEecCCCCccccceeecc-CccCcccCCCCCCCcCCCCC--eeeEEEee
Q 004132 641 ASTGQGLQIGAELTRQ---DGQVFYSMLFENNTQTPLDGFMIQFNK-NTFGLAAGGALQVPQLQPGT--SGRTLLPM 711 (772)
Q Consensus 641 ~~~~~gl~i~~~~~~~---~~~~~~~~~~tN~~~~~~~~f~~q~n~-n~fgl~~~~~~~~~~l~p~~--~~~~~~~l 711 (772)
+++.+||.|.+.+.|. ++.+.|.++|+|++..++++|.+|+.. .++.|....+ .-..|+|++ .++..+.+
T Consensus 33 v~~~~~l~I~f~~~r~~~~~~~~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~pp-Sg~~L~p~~~~~ItQ~~~I 108 (146)
T 1iu1_A 33 AYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSP-SSSIVPAFNTGTITQVIKV 108 (146)
T ss_dssp EEEETTEEEEEEEEECSSCTTEEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCC-SCSCBCGGGCCCEEEEEEE
T ss_pred EEecCCEEEEEEEEcCCCCCCEEEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCC-CCCccCCCCCCCEEEEEEE
Confidence 5688999999999995 356899999999999999999999998 7776665432 123566633 34444444
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0014 Score=68.19 Aligned_cols=192 Identities=11% Similarity=0.109 Sum_probs=122.1
Q ss_pred CCCCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcH---------HHHHHHHHHhhcCCCCHHHHhHHHHHhc
Q 004132 1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDL---------AILAVNTFVKDSQDPNPLIRALAVRTMG 71 (772)
Q Consensus 1 mt~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl---------~lL~iNtl~kDl~~~np~iralALrtl~ 71 (772)
|+-+.|..+-=...-.-+.+++-..|+=||-.+.......+.. ..-.+..+.|-+.|+|..+...|+.+++
T Consensus 1 m~~~e~~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~ 80 (278)
T 4ffb_C 1 MSGEEEVDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALN 80 (278)
T ss_dssp ----------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCCcchhhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 4555443322111235688999999999999887776544321 1112346788889999999999888876
Q ss_pred CCC------------hhhhHHHHHHHHH-hhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHH
Q 004132 72 CIR------------VDKITEYLCDPLQ-RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (772)
Q Consensus 72 ~I~------------~~ei~~~l~~~v~-~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~ 138 (772)
.+. ....+..+++.+. +++.|..+-+|..|..|+..+....... ..+.+.+...+..++|-|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~ 157 (278)
T 4ffb_C 81 SLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIA 157 (278)
T ss_dssp HHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHH
T ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHH
Confidence 431 1123455555554 6899999999999999999887653322 12568888889999999999
Q ss_pred HHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHH
Q 004132 139 NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSA 218 (772)
Q Consensus 139 ~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~ea 218 (772)
.++..|..+...-+.... + .......++..+...+.|+|+.|+-+|
T Consensus 158 ~~l~~l~~~l~~fg~~~~-----------------~-----------------~k~~l~~i~~~l~k~l~d~~~~VR~aA 203 (278)
T 4ffb_C 158 AAANCVYELMAAFGLTNV-----------------N-----------------VQTFLPELLKHVPQLAGHGDRNVRSQT 203 (278)
T ss_dssp HHHHHHHHHHHHHTTTTC-----------------C-----------------HHHHHHHHGGGHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcC-----------------C-----------------chhHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 988877765432111000 0 011122345556678899999999999
Q ss_pred HHHHHHhhhhc
Q 004132 219 VKMILQQMELI 229 (772)
Q Consensus 219 ik~i~~~~~~i 229 (772)
++++..++..+
T Consensus 204 ~~l~~~ly~~~ 214 (278)
T 4ffb_C 204 MNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHTC-
T ss_pred HHHHHHHHHHh
Confidence 99998765444
No 93
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.32 E-value=0.14 Score=63.23 Aligned_cols=158 Identities=9% Similarity=0.056 Sum_probs=90.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhc--------cchh
Q 004132 296 KLEIMIKLASDRNIDQVLLEFKEYAT--EVDVDFVRKAVRAIGRCAIKLERA-AERCISVLLELIKIK--------VNYV 364 (772)
Q Consensus 296 kL~lL~~L~n~~Nv~~Il~EL~~y~~--~~d~~~~~~~v~aIg~la~k~~~~-~~~~vd~Ll~ll~~~--------~~~v 364 (772)
.|+.+..+....-+..++.-|.+++. ..+-.-+..++.++|.++...... ...++..++..+..- ...+
T Consensus 436 ~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~ 515 (1049)
T 3m1i_C 436 VLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAV 515 (1049)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHH
Confidence 34444444433333444444455554 244556778899999888654332 223344444443321 1112
Q ss_pred HH-H---HHHHHHHHHHhCcccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccC-------------CHHHHHHHH
Q 004132 365 VQ-E---AIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-------------NADELLESF 427 (772)
Q Consensus 365 ~~-e---~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~-------------~~~~~L~~l 427 (772)
+. . ++..+...++.+|+....++..+.+.+.+ ..+.++..++|.+..+++... ..+++++.+
T Consensus 516 v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~-~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l 594 (1049)
T 3m1i_C 516 VASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDI 594 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Confidence 22 1 22233445556666666777777777754 357788888888877765432 234566655
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHhhcCC
Q 004132 428 LESFPEEPAQVQLQLLTATVKLFLKKP 454 (772)
Q Consensus 428 ~~~f~~e~~~vq~~lLta~~Kl~~~~p 454 (772)
..-+...+.+.+..++.|++.+....+
T Consensus 595 ~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 595 QKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 554555566667788889888887766
No 94
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.0034 Score=65.32 Aligned_cols=184 Identities=14% Similarity=0.104 Sum_probs=116.6
Q ss_pred HHhhhCCCChHHHHHHHHHHHHHHhhccccccc-------cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCc--c
Q 004132 86 LQRCLKDDDPYVRKTAAICVAKLYDINAELVED-------RGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPI--F 156 (772)
Q Consensus 86 v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~-------~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~--~ 156 (772)
+..-|.|+++-.|+.|+..+.+++...+..... ..+...+...+.|.|..|+..|+.++..+...-+... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 567899999999999999999999765533211 1245678889999999999999999988876432110 0
Q ss_pred c----ccHHHHHHHHHH-hhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCC
Q 004132 157 E----ITSHTLSKLLTA-LNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITS 231 (772)
Q Consensus 157 ~----l~~~~~~~Ll~~-L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~ 231 (772)
. .....+..|+.. +.+..+-.....++++..+.... .....+++.+.+.++|.|+-|+.+++..+..++.....
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 1 112234445543 44444544444444444332110 01234567888899999999999999998876543321
Q ss_pred hH-HHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhh
Q 004132 232 TD-VVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQR 270 (772)
Q Consensus 232 ~~-~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~ 270 (772)
.. -.+.....+.+.+..+++ +++++|-.|...+..+...
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 10 012233345666667774 7899999999998877643
No 95
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.08 E-value=0.15 Score=58.59 Aligned_cols=190 Identities=15% Similarity=0.143 Sum_probs=122.1
Q ss_pred hhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh-cC-CChhHHHHHHHHHHHHHhhCCCC
Q 004132 77 KITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI-SD-NNPMVVANAVAALAEIEENSSRP 154 (772)
Q Consensus 77 ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL-~D-~d~~Vv~~av~aL~eI~~~~~~~ 154 (772)
|.++.++.- +-...-.-=||.|+.++-.+-+.+|+.+...++ +.|...| +| .|..++..++-.|..+...+...
T Consensus 21 etI~~L~~R---l~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l-~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDR---VASSTLLDDRRNAVRALKSLSKKYRLEVGIQAM-EHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHH---HHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTH-HHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHH---HhhccchhHHHHHHHHHHHHHHHhHHHhhhhhH-HHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 344444333 334556677999999999999999988776454 4444444 44 56777777776665443221110
Q ss_pred -------------------cccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHH-------HHHHHhHhhc
Q 004132 155 -------------------IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAEN-------IVERVTPRLQ 208 (772)
Q Consensus 155 -------------------~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~-------il~~v~~~L~ 208 (772)
.|--.+..+.-|+..|...+.|.+.+.+++|.......+++.++ -+.++...|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 01123456777888888899999988888888776555543333 3467778899
Q ss_pred CCCHHHHHHHHHHHHHhhhhcCChHHHHHH-HHhcccchhhccCCc-----hhHHHHHHHHHHHHHhhCh
Q 004132 209 HANCAVVLSAVKMILQQMELITSTDVVRNL-CKKMAPPLVTLLSAE-----PEIQYVALRNINLIVQRRP 272 (772)
Q Consensus 209 ~~n~aVv~eaik~i~~~~~~i~~~~~~~~l-~~~~~~~L~~Lls~~-----~~iryvaL~~l~~i~~~~p 272 (772)
+....|.-||+-++..+.. .+++..+-+ ...+.+.|..++..+ ..+.-=+|..|..+++.++
T Consensus 177 d~rE~iRneallLL~~Lt~--~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTR--SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred CchHHHHHHHHHHHHHHhc--CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 9999999999999998754 244443332 225666677777432 2344446666777777765
No 96
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=0.0021 Score=59.15 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=49.5
Q ss_pred CCCCCCeEEEEEEeee---CCeeEEEEEEEecCCCCccccceeecc-CccCcccCCCCCCCcCCCCC
Q 004132 641 ASTGQGLQIGAELTRQ---DGQVFYSMLFENNTQTPLDGFMIQFNK-NTFGLAAGGALQVPQLQPGT 703 (772)
Q Consensus 641 ~~~~~gl~i~~~~~~~---~~~~~~~~~~tN~~~~~~~~f~~q~n~-n~fgl~~~~~~~~~~l~p~~ 703 (772)
+++.+||.|.+.+.|. ++.+.|.++|+|++..++++|.+|+.. .++.|....+ .-..|+|++
T Consensus 18 v~~~~~l~I~f~~~~~~~~~~~~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~-Sg~~l~p~~ 83 (131)
T 2e9g_A 18 VFEREGVQLNLSFIRPPENPALLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAP-SGNTVPARG 83 (131)
T ss_dssp EEECSSEEEEEEEECCSSCTTEEEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCC-SCSEECTTT
T ss_pred EEecCCEEEEEEEEcCCCCCCeEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCC-CCCCcCCCC
Confidence 5689999999999984 456899999999999999999999998 7777666432 123566644
No 97
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.77 E-value=0.0019 Score=66.03 Aligned_cols=186 Identities=19% Similarity=0.190 Sum_probs=120.0
Q ss_pred HhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcC
Q 004132 52 VKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD 131 (772)
Q Consensus 52 ~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D 131 (772)
.+-+.|+++.+|..|.+.+. + ..+.+++.|+++.||..|+..+ .+ +.|..++.|
T Consensus 56 ~~ll~d~~~~VR~~AA~~l~----~-------~~l~~L~~D~~~~VR~~aA~~L------~~---------~~L~~ll~D 109 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYSP----V-------EALTPLIRDSDEVVRRAVAYRL------PR---------EQLSALMFD 109 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTSC----G-------GGGGGGTTCSSHHHHHHHHTTS------CS---------GGGGGTTTC
T ss_pred HHHhcCCCHHHHHHHHHhCC----H-------HHHHHHccCcCHHHHHHHHHHC------CH---------HHHHHHHcC
Confidence 34458999999999999763 1 2278889999999999999642 11 346788999
Q ss_pred CChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCC
Q 004132 132 NNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHAN 211 (772)
Q Consensus 132 ~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n 211 (772)
.|+.|...++..+ +.. . |...+.+.+++.+..+.+-+ .+ +.+..++++.+
T Consensus 110 ~d~~VR~~aA~~l-------~~~-------~---L~~L~~D~d~~VR~~aA~~l---~~----------~~l~~l~~D~d 159 (244)
T 1lrv_A 110 EDREVRITVADRL-------PLE-------Q---LEQMAADRDYLVRAYVVQRI---PP----------GRLFRFMRDED 159 (244)
T ss_dssp SCHHHHHHHHHHS-------CTG-------G---GGGGTTCSSHHHHHHHHHHS---CG----------GGGGGTTTCSC
T ss_pred CCHHHHHHHHHhC-------CHH-------H---HHHHHcCCCHHHHHHHHHhc---CH----------HHHHHHHcCCC
Confidence 9999999887643 111 1 22224578888887777632 11 23445677888
Q ss_pred HHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcH
Q 004132 212 CAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPI 290 (772)
Q Consensus 212 ~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~ 290 (772)
+.|..+++..+ .+ +.|..++. .++++|..+..++ -+..+. ..+.+++.
T Consensus 160 ~~VR~~aa~~l--------~~-----------~ll~~ll~D~d~~VR~aaa~~l------~~~~L~------~Ll~D~d~ 208 (244)
T 1lrv_A 160 RQVRKLVAKRL--------PE-----------ESLGLMTQDPEPEVRRIVASRL------RGDDLL------ELLHDPDW 208 (244)
T ss_dssp HHHHHHHHHHS--------CG-----------GGGGGSTTCSSHHHHHHHHHHC------CGGGGG------GGGGCSSH
T ss_pred HHHHHHHHHcC--------CH-----------HHHHHHHcCCCHHHHHHHHHhC------CHHHHH------HHHcCCCH
Confidence 88888887641 11 12335554 6889999988763 122221 22456778
Q ss_pred hHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 004132 291 YVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIG 336 (772)
Q Consensus 291 ~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~~~~v~aIg 336 (772)
.||..+.+-+- ...| ..+.+.+..++..+..++|
T Consensus 209 ~VR~~aa~~l~-----------~~~L-~~L~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 209 TVRLAAVEHAS-----------LEAL-RELDEPDPEVRLAIAGRLG 242 (244)
T ss_dssp HHHHHHHHHSC-----------HHHH-HHCCCCCHHHHHHHHCCC-
T ss_pred HHHHHHHHcCC-----------HHHH-HHccCCCHHHHHHHHHHhC
Confidence 89888877642 1223 3346777777766665544
No 98
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.77 E-value=1.6 Score=53.82 Aligned_cols=133 Identities=13% Similarity=0.169 Sum_probs=84.0
Q ss_pred hhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh-------h----hh
Q 004132 10 LFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV-------D----KI 78 (772)
Q Consensus 10 lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~-------~----ei 78 (772)
.+-.++..+-+++.+.|+-+.-++.. ++.+|+.-..+..-+. .+.++.+|-.|+.+|-+... + .+
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q-~q~sp~aw~~~~~iL~---~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L 104 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTH-LKEHPDAWTRVDTILE---FSQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 104 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHT-SSCCSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH-HHcCchHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH
Confidence 45667777777788889999888866 4566785443333332 25689999999988876422 1 23
Q ss_pred HHHHHHHHHhhhCC-----CChHHHHHHHHHHHHHHhh-ccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHh
Q 004132 79 TEYLCDPLQRCLKD-----DDPYVRKTAAICVAKLYDI-NAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEE 149 (772)
Q Consensus 79 ~~~l~~~v~~~L~d-----~~pyVRK~Aa~~l~kl~~~-~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~ 149 (772)
-..+...+.+...+ .++.++.+.+.++..+++. .|+.-+ +|++.+..++.. ++...-..+..|..+.+
T Consensus 105 R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp--~fi~dLv~~~~~-~~~~~~~~L~IL~~L~E 178 (1073)
T 3gjx_A 105 KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP--TFISDIVGASRT-SESLCQNNMVILKLLSE 178 (1073)
T ss_dssp HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT--THHHHHHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc--HHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 34455555554333 3578889999999999876 566544 367777776653 33434444555555443
No 99
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=96.75 E-value=0.0021 Score=58.28 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=54.3
Q ss_pred CCCCCCeEEEEEEeeeC---CeeEEEEEEEecCCCCccccceeecc-CccCcccCCCCCCCcCCC--CCeeeEEEeee
Q 004132 641 ASTGQGLQIGAELTRQD---GQVFYSMLFENNTQTPLDGFMIQFNK-NTFGLAAGGALQVPQLQP--GTSGRTLLPMV 712 (772)
Q Consensus 641 ~~~~~gl~i~~~~~~~~---~~~~~~~~~tN~~~~~~~~f~~q~n~-n~fgl~~~~~~~~~~l~p--~~~~~~~~~l~ 712 (772)
+++.+||.|.+.|.|.+ +.+.|.++|+|++..++++|.+|+.. .++.|....+ .-..|+| |..++..+-|.
T Consensus 9 ~~~~~~l~I~~~~~~~~~~~~~~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~-Sg~~l~p~~~~~itQ~l~i~ 85 (122)
T 3zy7_A 9 AYDALGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSP-SSSVVPAFNTGTITQVIKVL 85 (122)
T ss_dssp EEEETTEEEEEEEECC----CEEEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCC-SCSCBCGGGSCCEEEEEEEE
T ss_pred EEeCCCEEEEEEEEcCCCCCCeEEEEEEEEECCCCccccEEEEEEcCcccEEEecCC-CCCccCCCCCCCEEEEEEEE
Confidence 56899999999999973 56899999999999999999999998 7776655432 1225666 55566666654
No 100
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0029 Score=57.45 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=54.0
Q ss_pred CCCCCCeEEEEEEeeeC-CeeEEEEEEEecCCCCccccceeecc-CccCcccCCCCCCCcCCCC--CeeeEEEee
Q 004132 641 ASTGQGLQIGAELTRQD-GQVFYSMLFENNTQTPLDGFMIQFNK-NTFGLAAGGALQVPQLQPG--TSGRTLLPM 711 (772)
Q Consensus 641 ~~~~~gl~i~~~~~~~~-~~~~~~~~~tN~~~~~~~~f~~q~n~-n~fgl~~~~~~~~~~l~p~--~~~~~~~~l 711 (772)
+++.+||.|.+.|.|.+ +.+.+.++|+|++..++++|.+|+.. .++.|....+ .-..|+|+ ..++..+-+
T Consensus 13 ~~~~~~l~I~~~~~~~~~~~~~i~~~fsN~s~~~it~f~fqaAVPKs~kL~L~p~-Sg~~L~p~~~~~itQ~~~I 86 (123)
T 3mnm_A 13 VNQSPNLKIEFEISRESNSVIRIXSFFTNLSSSPISNLVFLLAVPKSMSLXLQPQ-SSNFMIGNAKDGISQEGTI 86 (123)
T ss_dssp EEECSSEEEEEEEEECSSSCEEEEEEEEECSSSCEEEEEEEEECCTTSEEEECCC-SCSCBCTTCTTCEEEEEEE
T ss_pred EEeCCCEEEEEEEEeCCCCeEEEEEEEecCCCCccccEEEEEecCcccEEEeECC-CcCccCCCCCCCEEEEEEE
Confidence 56899999999999974 46899999999999999999999998 7776655432 22367776 445555555
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.59 E-value=0.05 Score=54.63 Aligned_cols=186 Identities=15% Similarity=0.109 Sum_probs=113.1
Q ss_pred CCCCCCccchhHH-----HHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCCh
Q 004132 1 MTVGKDVSSLFTD-----VVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRV 75 (772)
Q Consensus 1 mt~G~Dvs~lf~~-----vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~ 75 (772)
||-|..|...++. +.+-+..-..-.|-+--.+...+.....+-.+ ..+..-.+|+...+|++|...++.. .
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~~~~~~---~la~~L~~~~~deVR~~Av~lLg~~-~ 99 (240)
T 3l9t_A 24 MTGGQQMGRGSMKQYVARLEKDFSLIEHGFKEEEQRALTDYKSNDGEYIK---KLAFLAYQSDVYQVRMYAVFLFGYL-S 99 (240)
T ss_dssp ----------CHHHHHHHHHHHHTC-----CHHHHHHHHHHHHSCHHHHH---HHHHHHHTCSSHHHHHHHHHHHHHT-T
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhCCHHHHH---HHHHHHHhCcchHHHHHHHHHHHhc-c
Confidence 5556555554432 22222222222344433444444433323222 3344445677789999999999988 3
Q ss_pred hhhHHHHHHHHHh-hhCCCChHHHHHHHHHHHHHHh-hccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCC
Q 004132 76 DKITEYLCDPLQR-CLKDDDPYVRKTAAICVAKLYD-INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (772)
Q Consensus 76 ~ei~~~l~~~v~~-~L~d~~pyVRK~Aa~~l~kl~~-~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~ 153 (772)
. .+.+.+.++. ...|.+..||-.++.++.++.. .+|+. .++.+.....|.|+-|+..|+-.+.--+..
T Consensus 100 -~-~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--- 169 (240)
T 3l9t_A 100 -K-DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR--- 169 (240)
T ss_dssp -T-SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS---
T ss_pred -C-cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc---
Confidence 2 3667788887 7889999999999999999996 88884 457788899999999999886554221111
Q ss_pred CcccccHHHHHHHHHHh-hcCChhHHHHHHHHHhccccCCHHHHHHHH
Q 004132 154 PIFEITSHTLSKLLTAL-NECTEWGQVFILDALSRYKAADAREAENIV 200 (772)
Q Consensus 154 ~~~~l~~~~~~~Ll~~L-~~~~ew~qv~iL~~L~~~~~~~~~e~~~il 200 (772)
+.+...+..+..++..+ .+.+.+.|-.|=..|+.|...+++-...++
T Consensus 170 ~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 170 PYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp TTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 12344455556666655 467888999998999888887775544433
No 102
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=96.55 E-value=0.0042 Score=57.72 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=52.5
Q ss_pred CCCCCCeEEEEEEeee---CCeeEEEEEEEecCCCCccccceeecc-CccCcccCCCCCCCcCCCCC--eeeEEEee
Q 004132 641 ASTGQGLQIGAELTRQ---DGQVFYSMLFENNTQTPLDGFMIQFNK-NTFGLAAGGALQVPQLQPGT--SGRTLLPM 711 (772)
Q Consensus 641 ~~~~~gl~i~~~~~~~---~~~~~~~~~~tN~~~~~~~~f~~q~n~-n~fgl~~~~~~~~~~l~p~~--~~~~~~~l 711 (772)
+++.+||.|.+.+.|. ++.+.|.++|+|++..++++|.+|+.. .++.|....+ .-..|+|++ .++..+-|
T Consensus 27 v~~~n~L~I~f~~~r~~~~~~~~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~pp-Sg~~L~p~~~~~ItQ~m~I 102 (140)
T 1gyu_A 27 AYSKNGLKIEFTFERSNTNPSVTVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSP-SSSVVPAFNTGTITQVIKV 102 (140)
T ss_dssp EEEETTEEEEEEEEECSSCTTEEEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCC-SCSCBCGGGCCCEEEEEEE
T ss_pred EEecCCEEEEEEEEcCCCCCCEEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCC-CCCccCCCCCCCEEEEEEE
Confidence 5688999999999995 456899999999999999999999998 7776665432 123566633 24444544
No 103
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.53 E-value=0.22 Score=50.92 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=71.5
Q ss_pred HHhHHHHHhcC---CChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHH
Q 004132 62 IRALAVRTMGC---IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (772)
Q Consensus 62 iralALrtl~~---I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~ 138 (772)
.+...|+..-. -..+++.+.+.+.+.....|++..|||..+--+...++..+++... .++.|..||+|.|+.|+-
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~--~l~~L~~Ll~d~d~~V~K 108 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPH--VINVVSMLLRDNSAQVIK 108 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH--HHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcCCCHHHHH
Confidence 55555554443 2468899999999999999999999999999999999999998875 889999999999999999
Q ss_pred HHHHHHHHHH
Q 004132 139 NAVAALAEIE 148 (772)
Q Consensus 139 ~av~aL~eI~ 148 (772)
.++.+...|.
T Consensus 109 ~~I~~~~~iY 118 (257)
T 3gs3_A 109 RVIQACGSIY 118 (257)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887664
No 104
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.43 E-value=2.5 Score=51.83 Aligned_cols=362 Identities=11% Similarity=0.145 Sum_probs=176.3
Q ss_pred HHHHHHHhhhC-CCChHHHHHHHHHHHHHHhhcc-ccccccchHHHHH-HhhcCCChhHHHHHHHHHHHHHhhCC-CC--
Q 004132 81 YLCDPLQRCLK-DDDPYVRKTAAICVAKLYDINA-ELVEDRGFLESLK-DLISDNNPMVVANAVAALAEIEENSS-RP-- 154 (772)
Q Consensus 81 ~l~~~v~~~L~-d~~pyVRK~Aa~~l~kl~~~~p-~~~~~~~~~~~L~-~lL~D~d~~Vv~~av~aL~eI~~~~~-~~-- 154 (772)
.+...+.++|. ..++-+.+.+.-|+.+....-| +.+-..++++.+. .+|. ++.....|+-+|.+|..... ++
T Consensus 194 ~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~ 271 (1023)
T 4hat_C 194 QIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDND 271 (1023)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchH
Confidence 33444445554 3677888999999998887644 4444456888887 7775 56788899999999986432 11
Q ss_pred ccc-ccHHHHHHHHHHh-hc----CChhHHHHHHHHHhccccCCHHH-HHHHHHHH-------hHhhcCC-C-HHHHHHH
Q 004132 155 IFE-ITSHTLSKLLTAL-NE----CTEWGQVFILDALSRYKAADARE-AENIVERV-------TPRLQHA-N-CAVVLSA 218 (772)
Q Consensus 155 ~~~-l~~~~~~~Ll~~L-~~----~~ew~qv~iL~~L~~~~~~~~~e-~~~il~~v-------~~~L~~~-n-~aVv~ea 218 (772)
.++ .....+...+..+ .. ...+. ..+.. ...++.+ .+.+...+ ..++... + ..++..+
T Consensus 272 ~~~~~l~~lf~~~l~~l~~~i~p~~~~l~-----~~~~~-~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~ 345 (1023)
T 4hat_C 272 LIKRQTVLFFQNTLQQIATSVMPVTADLK-----ATYAN-ANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNA 345 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTCCHH-----HHHHH-TCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchHH-----HHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHH
Confidence 111 1111122222211 10 00110 01111 1111111 11121111 1122221 1 3444555
Q ss_pred HHHHHHhhhhcCChHHHHHHHH---hcccchhhccCC---chhHHHHHHHHHHHHHhh--Chhh---hhhhcc-ee--ee
Q 004132 219 VKMILQQMELITSTDVVRNLCK---KMAPPLVTLLSA---EPEIQYVALRNINLIVQR--RPTI---LAHEIK-VF--FC 284 (772)
Q Consensus 219 ik~i~~~~~~i~~~~~~~~l~~---~~~~~L~~Lls~---~~~iryvaL~~l~~i~~~--~p~~---~~~~~~-if--~~ 284 (772)
...++.+.. +.+.+..+.... .+.. .+.+. ..-.+-+-.+.+..++.+ +|.- +..+.. .+ +.
T Consensus 346 l~~Ll~~~~-~~d~ei~~~tl~FW~~L~~---~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~ 421 (1023)
T 4hat_C 346 HQYLIQLSK-IEERELFKTTLDYWHNLVA---DLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFV 421 (1023)
T ss_dssp HHHHHHHTT-SSCHHHHHHHHHHHHHHHH---HHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSS
T ss_pred HHHHHHhhC-CCcHHHHHHHHHHHHHHHH---HHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhc
Confidence 556655432 233333221100 1111 01111 111122222233333332 4541 122211 11 11
Q ss_pred ccCCc--Hh-HHHHHHHHHHHhcccccHHHHHHHHHHhhhh--ccHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHH
Q 004132 285 KYNDP--IY-VKMEKLEIMIKLASDRNIDQVLLEFKEYATE--VDVDFVRKAVRAIGRCAIKLERA-----AERCISVLL 354 (772)
Q Consensus 285 ~~~d~--~~-Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~--~d~~~~~~~v~aIg~la~k~~~~-----~~~~vd~Ll 354 (772)
...|+ .| .=|..|..++.+...+-++.+++.|.+.+.. .+=..++.++-++|.++....+. ....+..|+
T Consensus 422 ~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll 501 (1023)
T 4hat_C 422 KESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLL 501 (1023)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH
Confidence 11121 22 1135666666666666666667767666543 45677788999999998765332 234566666
Q ss_pred HHHhhcc-----chhHHHHHH---HHHHHHHhCcccHHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccC--------
Q 004132 355 ELIKIKV-----NYVVQEAII---VIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID-------- 418 (772)
Q Consensus 355 ~ll~~~~-----~~v~~e~i~---~l~~i~~~~p~~~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~-------- 418 (772)
++...+. ..|.+.+.- .+.+.+..+|+..+.++..|.+.+.+ +.|.+..+++|.+-..++...
T Consensus 502 ~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~-~~~~v~~~A~~al~~l~~~c~~~l~~~~~ 580 (1023)
T 4hat_C 502 DLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE-THEGVQDMACDTFIKIVQKCKYHFVIQQP 580 (1023)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHHTHHHHSCCT
T ss_pred HhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 6665321 112222212 23344555666666777777777643 346666777777655544321
Q ss_pred -----CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCC
Q 004132 419 -----NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPT 455 (772)
Q Consensus 419 -----~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~ 455 (772)
-..++++.+...+..-++.-+..+..|+..+....|.
T Consensus 581 ~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 581 RESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp TCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 1245555555544455677777888888888887775
No 105
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.34 E-value=0.19 Score=60.92 Aligned_cols=219 Identities=16% Similarity=0.197 Sum_probs=163.7
Q ss_pred HHHHHHhhcCCCCHHHHhHHHHH---hcCCChhhhHHHHHHHHHhhhCCC-ChHHHHHHHHHHHHHHhhccccccc--cc
Q 004132 47 AVNTFVKDSQDPNPLIRALAVRT---MGCIRVDKITEYLCDPLQRCLKDD-DPYVRKTAAICVAKLYDINAELVED--RG 120 (772)
Q Consensus 47 ~iNtl~kDl~~~np~iralALrt---l~~I~~~ei~~~l~~~v~~~L~d~-~pyVRK~Aa~~l~kl~~~~p~~~~~--~~ 120 (772)
..+.+..-+.|.+..||..|-.+ +.....++-+..+.|.+...+.+. .+-.+-.|.-++.++....|+.+.. .+
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 35677777889999999876554 444457777799999999999765 6889999999999999888886643 35
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhc--ccc-CCHHHHH
Q 004132 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSR--YKA-ADAREAE 197 (772)
Q Consensus 121 ~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~--~~~-~~~~e~~ 197 (772)
+++.+.+++-|.-+.|-.+|..++..+|..-.. .++ .+.+..|++++.++++ .-..++.|+. |.. -+.....
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n--~d~-~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~ 250 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDN--KDI-ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS 250 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC--TTT-GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC--cch-hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH
Confidence 788889999999999999999999999864221 111 2347788888887766 3344555542 322 2334444
Q ss_pred HHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHHHhcccchhhccC--CchhHHHHHHHHHHHHHhh
Q 004132 198 NIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLS--AEPEIQYVALRNINLIVQR 270 (772)
Q Consensus 198 ~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls--~~~~iryvaL~~l~~i~~~ 270 (772)
-+.+.+..-|+....++-..++-++-++...+.+|.....+.-++.|.|-+... ++||.|-++-+++..+...
T Consensus 251 ~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 455666666888888999999888888877788998888887788877777664 6999999998888877543
No 106
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.30 E-value=1 Score=49.82 Aligned_cols=195 Identities=15% Similarity=0.097 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHHHHHhhCh---hhhhhhc----ceee-eccCCcHhHHHHHHHHHHHhcccc------cHHHHH--HHHH
Q 004132 254 PEIQYVALRNINLIVQRRP---TILAHEI----KVFF-CKYNDPIYVKMEKLEIMIKLASDR------NIDQVL--LEFK 317 (772)
Q Consensus 254 ~~iryvaL~~l~~i~~~~p---~~~~~~~----~if~-~~~~d~~~Ik~~kL~lL~~L~n~~------Nv~~Il--~EL~ 317 (772)
..++|-++-++-.+.-... .+...++ ..+. ++...-.-|-|..+-++..+.+.. .+.+++ ..+.
T Consensus 242 ~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l 321 (480)
T 1ho8_A 242 IQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL 321 (480)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccch
Confidence 4678888877776643211 1111111 0111 122222445566677777777654 222211 1111
Q ss_pred Hhh------hhccHHHHHHHHHHHHHHHHhhh--hhHHHHHHHH-HHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHH
Q 004132 318 EYA------TEVDVDFVRKAVRAIGRCAIKLE--RAAERCISVL-LELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIA 388 (772)
Q Consensus 318 ~y~------~~~d~~~~~~~v~aIg~la~k~~--~~~~~~vd~L-l~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~ 388 (772)
..+ .-.|+|+..++-.--..+.+.+. +..+.|..-+ -..|+-..-|-.+.-|.- =.++.-+.--.++.
T Consensus 322 ~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~E---Na~kf~e~~~~llk 398 (480)
T 1ho8_A 322 PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSD---NIDEFKKDNYKIFR 398 (480)
T ss_dssp HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHH---HSGGGSSGGGHHHH
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHH---HHHHHHhcchHHHH
Confidence 221 22577776654433333333321 2334444332 333333344444444431 11222233335778
Q ss_pred HHHHhccc---------CChHHHHHHHHHHHhhhccccCCHHHHHHHH------hhhCCCCCHHHHHHHHHHHHHHhh
Q 004132 389 TLCESLDT---------LDEPEAKASMIWIIGEYAERIDNADELLESF------LESFPEEPAQVQLQLLTATVKLFL 451 (772)
Q Consensus 389 ~L~~~l~~---------~~~p~a~~~~iwilGEy~~~i~~~~~~L~~l------~~~f~~e~~~vq~~lLta~~Kl~~ 451 (772)
.|++.|++ -.+|...++++.=||||....++...+++.+ ++-...++++||..+|.|+-|+-.
T Consensus 399 ~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 399 QLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 88888863 2467789999999999999998877777653 344566889999999999998754
No 107
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.18 E-value=0.22 Score=53.84 Aligned_cols=132 Identities=16% Similarity=0.222 Sum_probs=95.5
Q ss_pred HHhHHHHHhcCC---ChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHH
Q 004132 62 IRALAVRTMGCI---RVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVA 138 (772)
Q Consensus 62 iralALrtl~~I---~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~ 138 (772)
.+...|+.+-.+ +.+++.+.+++.|.....|.+..|||..+--+...+..+++++.. .++.|..||+|.|+.|+-
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~--~l~~L~~LL~d~d~~V~K 118 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLK--LIANLNMLLRDENVNVVK 118 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH--HHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcCCCHHHHH
Confidence 455555555553 567888999999999999999999999999999999999998864 889999999999999999
Q ss_pred HHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCC-----hhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHH
Q 004132 139 NAVAALAEIEENSSRPIFEITSHTLSKLLTALNECT-----EWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCA 213 (772)
Q Consensus 139 ~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~-----ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~a 213 (772)
.++.+...|.+. .++.+++. ...+ -|..+. .+-+.+.....+.|.+
T Consensus 119 ~~I~~~tslYpl-----------~f~~i~~~-~~~~~~~e~~W~~m~-----------------~lK~~Il~~~ds~n~G 169 (386)
T 3o2t_A 119 KAILTMTQLYKV-----------ALQWMVKS-RVISELQEACWDMVS-----------------AMAGDIILLLDSDNDG 169 (386)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHC--CCCHHHHHHHHHHH-----------------HHHHHHHHGGGCSSHH
T ss_pred HHHHHHHHHHHH-----------HHHHHhcC-CCcchhHHHHHHHHH-----------------HHHHHHHHHhccCCcc
Confidence 888887665421 24444432 1111 233222 2224455566778888
Q ss_pred HHHHHHHHHHH
Q 004132 214 VVLSAVKMILQ 224 (772)
Q Consensus 214 Vv~eaik~i~~ 224 (772)
|.+.|+|.+-.
T Consensus 170 Vrl~aiKFle~ 180 (386)
T 3o2t_A 170 IRTHAIKFVEG 180 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99888887644
No 108
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=95.99 E-value=0.011 Score=55.73 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=43.4
Q ss_pred CCCCCCeEEEEEEeee-----CCeeEEEEEEEecCCCCccccceeecc-CccCcccC
Q 004132 641 ASTGQGLQIGAELTRQ-----DGQVFYSMLFENNTQTPLDGFMIQFNK-NTFGLAAG 691 (772)
Q Consensus 641 ~~~~~gl~i~~~~~~~-----~~~~~~~~~~tN~~~~~~~~f~~q~n~-n~fgl~~~ 691 (772)
+++.+||.|.+.|.|. ++...+.++++|++..++++|.+|+.. .++.|...
T Consensus 31 v~~~n~l~I~f~~~~~~~p~~~~~~~i~~~~~N~s~~~is~f~fQaAVPK~~kLqL~ 87 (153)
T 1p4u_A 31 AYDKNGFRILFHFAKECPPGRPDVLVVVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQ 87 (153)
T ss_dssp EEEETTEEEEEEEBSSCCTTCTTEEEEEEEEEECSSSCBEEEEEEEECBTTSEEEEC
T ss_pred EEecCCEEEEEEEEecCCCCCCCeEEEEEEEEeCCCCccccEEEEEEcCcccEEEee
Confidence 5688999999999994 335688999999999999999999998 77766554
No 109
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.87 E-value=0.16 Score=62.46 Aligned_cols=139 Identities=9% Similarity=0.119 Sum_probs=79.1
Q ss_pred HHHHHHhhcCC--CCHHHH---hHHHHHh-cCCCh---hhhHHHHHHHHHhhhCCC-----ChHHHHHHHHHHHHHHh--
Q 004132 47 AVNTFVKDSQD--PNPLIR---ALAVRTM-GCIRV---DKITEYLCDPLQRCLKDD-----DPYVRKTAAICVAKLYD-- 110 (772)
Q Consensus 47 ~iNtl~kDl~~--~np~ir---alALrtl-~~I~~---~ei~~~l~~~v~~~L~d~-----~pyVRK~Aa~~l~kl~~-- 110 (772)
....+.+-+.+ .+...+ +.|+++| |++.. ....+.+++.+..+..++ .+.||...+..+++.-+
T Consensus 478 ~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl 557 (1073)
T 3gjx_A 478 MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFL 557 (1073)
T ss_dssp HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHH
Confidence 34455554443 334444 4555666 33332 134556666666666444 45566666667776443
Q ss_pred -hccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcc-cc----cHHHHHHHHHHh----hcCChhHHHH
Q 004132 111 -INAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF-EI----TSHTLSKLLTAL----NECTEWGQVF 180 (772)
Q Consensus 111 -~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~-~l----~~~~~~~Ll~~L----~~~~ew~qv~ 180 (772)
.+|+.++. .+..|-+.+.|++++|..+|+.++..|++. |+..+ .. ..+.+..+++.+ ....+-....
T Consensus 558 ~~h~~~L~~--vl~~L~~~m~~~~~~vq~aA~~af~~i~~~-C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ 634 (1073)
T 3gjx_A 558 RAHWKFLKT--VVNKLFEFMHETHDGVQDMACDTFIKIAQK-CRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT 634 (1073)
T ss_dssp HHCHHHHHH--HHHHHHHHTTCCSTTHHHHHHHHHHHHHHH-TGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH
T ss_pred HhCHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-HHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 46776654 566677777899999999999999999875 33222 10 011233333332 3345555566
Q ss_pred HHHHHhcc
Q 004132 181 ILDALSRY 188 (772)
Q Consensus 181 iL~~L~~~ 188 (772)
+.+.++..
T Consensus 635 lyeav~~v 642 (1073)
T 3gjx_A 635 FYEAVGYM 642 (1073)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 110
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.74 E-value=0.19 Score=51.68 Aligned_cols=180 Identities=12% Similarity=0.045 Sum_probs=112.7
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHH----hhcCCChhHHHHHHHHHHHHHhhCCC
Q 004132 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD----LISDNNPMVVANAVAALAEIEENSSR 153 (772)
Q Consensus 78 i~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~----lL~D~d~~Vv~~av~aL~eI~~~~~~ 153 (772)
+..++-+.+...+-+.+.--|-+|+..+.+....+|+.+.. .++.+-+ .+.|+|+.|...++-.|..+...-..
T Consensus 43 ~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~ 120 (266)
T 2of3_A 43 LGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRD 120 (266)
T ss_dssp HHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 33444456778888899988889999999988777765432 2333333 45699999999888888776432111
Q ss_pred Cccccc----HHHHHHHHHHhhcCChhHHHHH---HHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhh
Q 004132 154 PIFEIT----SHTLSKLLTALNECTEWGQVFI---LDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQM 226 (772)
Q Consensus 154 ~~~~l~----~~~~~~Ll~~L~~~~ew~qv~i---L~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~ 226 (772)
..+.+. ...+..|+..+.+..+=.+-.+ ++.+....| ...+.+.+..-++|.|.=++-|++..+..+.
T Consensus 121 ~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-----~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 121 TETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-----PLKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp TTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 112222 2345667777766654443333 333332211 2346677777788889888888888887765
Q ss_pred hhcCChHHHHHHHHhcc---cchhhccC-CchhHHHHHHHHHHHHHhh
Q 004132 227 ELITSTDVVRNLCKKMA---PPLVTLLS-AEPEIQYVALRNINLIVQR 270 (772)
Q Consensus 227 ~~i~~~~~~~~l~~~~~---~~L~~Lls-~~~~iryvaL~~l~~i~~~ 270 (772)
+..+.+ ..+.. +.+..+++ +++++|-.|++++..+-..
T Consensus 196 ~~~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 196 TNAGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HhcCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 543322 12344 55667775 6788888888888766544
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.68 E-value=0.12 Score=52.14 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=100.4
Q ss_pred HHHHHHhhhCCCCh--HHHHHHHHHHHHHHhhccc---cccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcc
Q 004132 82 LCDPLQRCLKDDDP--YVRKTAAICVAKLYDINAE---LVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (772)
Q Consensus 82 l~~~v~~~L~d~~p--yVRK~Aa~~l~kl~~~~p~---~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~ 156 (772)
.++.+.++|.+.++ -|+..|+.++..+...+++ .+.+.|.++.|.++|...++.+...|+.+|..+...+.....
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 35667888888887 8888999898887765543 344457789999999999999999999999998764322111
Q ss_pred cc-cHHHHHHHHHHhhc-CChhHHHHHHHHHhccccCCH---HHHHHHHHHHhHhh----------------cCCCHHHH
Q 004132 157 EI-TSHTLSKLLTALNE-CTEWGQVFILDALSRYKAADA---REAENIVERVTPRL----------------QHANCAVV 215 (772)
Q Consensus 157 ~l-~~~~~~~Ll~~L~~-~~ew~qv~iL~~L~~~~~~~~---~e~~~il~~v~~~L----------------~~~n~aVv 215 (772)
.+ ....+..|++.|.. .++-.|-....+|..+...+. .-...-+..+...+ ...++.|.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~ 168 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence 11 12356667777764 455556555544444332111 11112223332221 12356888
Q ss_pred HHHHHHHHHhhhhcCChHHHHHHHH--hcccchhhcc
Q 004132 216 LSAVKMILQQMELITSTDVVRNLCK--KMAPPLVTLL 250 (772)
Q Consensus 216 ~eaik~i~~~~~~i~~~~~~~~l~~--~~~~~L~~Ll 250 (772)
..|+-++.++. ..+++..+.+.. -++++|+.++
T Consensus 169 ~na~~~L~nLs--s~~~~~R~~~r~~~Gli~~Lv~~l 203 (233)
T 3tt9_A 169 YNVTGCLRNMS--SAGADGRKAMRRCDGLIDSLVHYV 203 (233)
T ss_dssp HHHHHHHHHHT--TSCHHHHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHCCCcHHHHHHHH
Confidence 88888887753 124454444322 2445666665
No 112
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.06 E-value=7.2 Score=47.27 Aligned_cols=253 Identities=18% Similarity=0.215 Sum_probs=153.4
Q ss_pred hcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccc--cccc--cchHHHHHHhhcCCChhHHHHHHHHHH
Q 004132 70 MGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAE--LVED--RGFLESLKDLISDNNPMVVANAVAALA 145 (772)
Q Consensus 70 l~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~--~~~~--~~~~~~L~~lL~D~d~~Vv~~av~aL~ 145 (772)
.+.+....+...+...+++.+.++..- -.|+.++..+++..+- -++. -.+++.+.++..|++..|..+|-.++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~ 120 (986)
T 2iw3_A 43 NGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLI 120 (986)
T ss_dssp TSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 334444444456778899999996444 8888888888865532 1221 024577778889999999999988888
Q ss_pred HHHhhCCCCcccccHHHHHHHHHHhhcCChh-HHHHHHHHHhccccCCHHH----HHHHHHHHhHhhcCCCHHHHHHHHH
Q 004132 146 EIEENSSRPIFEITSHTLSKLLTALNECTEW-GQVFILDALSRYKAADARE----AENIVERVTPRLQHANCAVVLSAVK 220 (772)
Q Consensus 146 eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew-~qv~iL~~L~~~~~~~~~e----~~~il~~v~~~L~~~n~aVv~eaik 220 (772)
.|...-++ +. ....+..|++.|....-| .++-.|+++..+....++. ..++++.+...+.+.-+-|--.|.+
T Consensus 121 ~~~~~~~~--~a-~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~ 197 (986)
T 2iw3_A 121 SIVNAVNP--VA-IKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATA 197 (986)
T ss_dssp HHHHHSCG--GG-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHhCCH--HH-HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHH
Confidence 88765443 22 245677888888777779 5777788888776433333 3456667777777888888888888
Q ss_pred HHHHhhhhcCChHHHHHHHHhcccchhhccCCchhHHHHHHHHHHHHHhhC-------hh--hhhhhcceeeeccCCcHh
Q 004132 221 MILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRR-------PT--ILAHEIKVFFCKYNDPIY 291 (772)
Q Consensus 221 ~i~~~~~~i~~~~~~~~l~~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~-------p~--~~~~~~~if~~~~~d~~~ 291 (772)
++..+...+.+.+.. ..+|.|+..+.+..+ +=.++..+.... |. ++.+-+ ...+.+....
T Consensus 198 ~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l--~r~l~~~~~~ 266 (986)
T 2iw3_A 198 AMTKATETVDNKDIE-----RFIPSLIQCIADPTE----VPETVHLLGATTFVAEVTPATLSIMVPLL--SRGLNERETG 266 (986)
T ss_dssp HHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH----HHHHHHHHTTCCCCSCCCHHHHHHHHHHH--HHHHTSSSHH
T ss_pred HHHHHHhcCCCcchh-----hhHHHHHHHhcChhh----hHHHHHHhhcCeeEeeecchhHHHHHHHH--HhhhccCcch
Confidence 888776666665432 234445554433333 223344443321 11 111100 0123445678
Q ss_pred HHHHHHHHHH---Hhcc-cccHHHHHHHHH----H-hhhhccHHHHHHHHHHHHHH
Q 004132 292 VKMEKLEIMI---KLAS-DRNIDQVLLEFK----E-YATEVDVDFVRKAVRAIGRC 338 (772)
Q Consensus 292 Ik~~kL~lL~---~L~n-~~Nv~~Il~EL~----~-y~~~~d~~~~~~~v~aIg~l 338 (772)
+||++.=+.- +|++ +.-+..-+..|+ . +-+-.|+|.|..+-+++..+
T Consensus 267 ~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 267 IKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred hheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 8888765544 4444 444444444443 3 23446888887766666554
No 113
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.86 E-value=0.055 Score=54.72 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=78.6
Q ss_pred HHHHHHHhhcCCCCH--HHHhHHHHHhcCCC--hhh----hHH-HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc---
Q 004132 46 LAVNTFVKDSQDPNP--LIRALAVRTMGCIR--VDK----ITE-YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA--- 113 (772)
Q Consensus 46 L~iNtl~kDl~~~np--~iralALrtl~~I~--~~e----i~~-~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p--- 113 (772)
|.+..+.+-|.++++ .++..|..++.++. .++ +.+ -.+|++.++|.+.++.||+.|+.++..+-..++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 344566777777776 77766666666553 122 222 246889999999999999999999999976544
Q ss_pred ccccccchHHHHHHhhc-CCChhHHHHHHHHHHHHHhh
Q 004132 114 ELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 114 ~~~~~~~~~~~L~~lL~-D~d~~Vv~~av~aL~eI~~~ 150 (772)
..+.+.|-++.|.++|. ..+..+.-+|+.+|..+...
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 34555688999999997 57899999999999998754
No 114
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.81 E-value=3.5 Score=45.48 Aligned_cols=120 Identities=14% Similarity=0.159 Sum_probs=77.4
Q ss_pred CCchhHHHHHHHHHHHHHhhChhhhhhhcc-eeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccH---H
Q 004132 251 SAEPEIQYVALRNINLIVQRRPTILAHEIK-VFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDV---D 326 (772)
Q Consensus 251 s~~~~iryvaL~~l~~i~~~~p~~~~~~~~-if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~---~ 326 (772)
+.++..+-+|-..|.+..+.+|++-..-+. .+.+-.++|..||..++.-|..+|..+++..|.+-|.+.+..-|. +
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~ 118 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDDSAEFN 118 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccchHHHH
Confidence 456788888888888888888887554443 344446778889999999999999999999999999988875443 3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 004132 327 FVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIF 376 (772)
Q Consensus 327 ~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~ 376 (772)
.++.++..+-+ .+....+..++.-+..+.+.+++.++..|+.-+
T Consensus 119 ~V~~sL~sllk------~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 119 LVNNALLSIFK------MDAKGTLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HHHHHHHHHHH------HCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHh------cChHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 33443332211 122334444444444444444444444444433
No 115
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.28 E-value=0.18 Score=56.46 Aligned_cols=231 Identities=14% Similarity=0.140 Sum_probs=135.5
Q ss_pred HHhhcCCCcchHHHHHHHHHHhccCC-----------CcHHHHHHHHHHhh----cCCC--CHHHHhHHHHHhcCCC--h
Q 004132 15 VNCMQTENLELKKLVYLYLINYAKSQ-----------PDLAILAVNTFVKD----SQDP--NPLIRALAVRTMGCIR--V 75 (772)
Q Consensus 15 i~l~~s~~~~lKrl~YL~l~~~~~~~-----------~dl~lL~iNtl~kD----l~~~--np~iralALrtl~~I~--~ 75 (772)
+.-+-+++=+.|.=+.+++..+.+.+ .|+++-.+=.|.-| .-+. ---||--|-.+||.+. .
T Consensus 180 ~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL~hLp 259 (800)
T 3oc3_A 180 SDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLI 259 (800)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHHTTTS
T ss_pred HHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHHHhCC
Confidence 33455666677777777777766433 35555444333332 2221 1345555555555441 2
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcccccc-ccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC
Q 004132 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVE-DRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP 154 (772)
Q Consensus 76 ~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~-~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~ 154 (772)
++ .+. ...+.+.+....+-||--+.+++--+ .+++. -.++++.+...|.|.|--|++.|..+|..+. .+.
T Consensus 260 ~e-~~I-L~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~- 330 (800)
T 3oc3_A 260 GP-NDI-IEQLVGFLDSGDWQVQFSGLIALGYL----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITD- 330 (800)
T ss_dssp CS-CCH-HHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSS-
T ss_pred hh-HHH-HHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chh-
Confidence 22 222 22223455778999999999988765 33332 1346778888899999999999999998887 221
Q ss_pred cccccHHHHHHHHHHhhcCChhHHHHHHHHHhcccc--CCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCCh
Q 004132 155 IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKA--ADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITST 232 (772)
Q Consensus 155 ~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~--~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~ 232 (772)
.+......+-..|..+.+.+ -....++++|+.+.. .+......+++++.|+++|+-++|+.++++++..++ +.
T Consensus 331 ~l~~LL~iLWd~L~~LDDLS-ASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL----~~ 405 (800)
T 3oc3_A 331 SLDLVLEKCWKNIESEELIS-VSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS----EE 405 (800)
T ss_dssp THHHHHHHHHHHHHTCCSCC-TTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC----CH
T ss_pred hHHHHHHHHHHHhhhhcccc-hhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH----hh
Confidence 11111112222222222222 234456666665431 110011267788999999999999999999998653 55
Q ss_pred HHHHHHHHhcccchhhccCCchhHHHHHHHHHH
Q 004132 233 DVVRNLCKKMAPPLVTLLSAEPEIQYVALRNIN 265 (772)
Q Consensus 233 ~~~~~l~~~~~~~L~~Lls~~~~iryvaL~~l~ 265 (772)
..++-+.+++ |+..+.+|+-.+++.-.
T Consensus 406 ~~LRLIFQNI------LLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 406 SIDFLVAEVV------LIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHH------HHCSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHH------HhCCcHHHHHHHHHHHH
Confidence 6666544432 45778888888777663
No 116
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=92.68 E-value=23 Score=44.13 Aligned_cols=299 Identities=13% Similarity=0.093 Sum_probs=151.5
Q ss_pred ChHHHHHHHHHHHHHHhhcc-ccc-cc-cchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCC--C---ccccc-HHHHH
Q 004132 94 DPYVRKTAAICVAKLYDINA-ELV-ED-RGFLESLKDLISDNNPMVVANAVAALAEIEENSSR--P---IFEIT-SHTLS 164 (772)
Q Consensus 94 ~pyVRK~Aa~~l~kl~~~~p-~~~-~~-~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~--~---~~~l~-~~~~~ 164 (772)
++.+++.|..|+......-| ..+ +. ..+++.+..++. ++.+...|+.+|.+|...... . ++... ...+.
T Consensus 220 ~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~ 297 (1204)
T 3a6p_A 220 NCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMH 297 (1204)
T ss_dssp HHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHH
Confidence 34577777777776655444 121 11 126676776666 466788899999999865421 1 12222 12233
Q ss_pred HHHHHhh--cC---Ch---hHHHHHHHHHhccc------------cCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHH
Q 004132 165 KLLTALN--EC---TE---WGQVFILDALSRYK------------AADAREAENIVERVTPRLQHANCAVVLSAVKMILQ 224 (772)
Q Consensus 165 ~Ll~~L~--~~---~e---w~qv~iL~~L~~~~------------~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~ 224 (772)
+++..+. +. ++ =...++-+++..++ .........+++.+..+++|.+..|...+...-..
T Consensus 298 ~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ 377 (1204)
T 3a6p_A 298 YILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGA 377 (1204)
T ss_dssp HHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHH
Confidence 4444431 10 11 01112222222221 01233456788888888889887877777766554
Q ss_pred hhhhc--CChHHHHHHHHhcccch---h-hcc--C---------------Cc-------hhHHHHHHHHHHHHHhhChhh
Q 004132 225 QMELI--TSTDVVRNLCKKMAPPL---V-TLL--S---------------AE-------PEIQYVALRNINLIVQRRPTI 274 (772)
Q Consensus 225 ~~~~i--~~~~~~~~l~~~~~~~L---~-~Ll--s---------------~~-------~~iryvaL~~l~~i~~~~p~~ 274 (772)
++... ...+.++.+..++++.+ + ++- . .+ .+.|.-....+..++...|..
T Consensus 378 ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~ 457 (1204)
T 3a6p_A 378 LFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT 457 (1204)
T ss_dssp HHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 43321 11222333333333322 1 110 0 01 134554455556666666543
Q ss_pred hh----hhc----c----------ee--------eeccCCcHhHHHHH----HHHHHHhc-----ccccHHHHHHHHHHh
Q 004132 275 LA----HEI----K----------VF--------FCKYNDPIYVKMEK----LEIMIKLA-----SDRNIDQVLLEFKEY 319 (772)
Q Consensus 275 ~~----~~~----~----------if--------~~~~~d~~~Ik~~k----L~lL~~L~-----n~~Nv~~Il~EL~~y 319 (772)
.- +++ . .| +|...++.+...++ ++.+..-+ +++.-..++..|+..
T Consensus 458 ~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ 537 (1204)
T 3a6p_A 458 SFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQM 537 (1204)
T ss_dssp HHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 21 221 1 01 55445566666565 44443333 122111355566665
Q ss_pred hh---hccHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHhh------------ccchhHHHHHHHHHHHHHhCcc
Q 004132 320 AT---EVDVDFVRKAVRAIGRCAIKLE---RAAERCISVLLELIKI------------KVNYVVQEAIIVIKDIFRRYPN 381 (772)
Q Consensus 320 ~~---~~d~~~~~~~v~aIg~la~k~~---~~~~~~vd~Ll~ll~~------------~~~~v~~e~i~~l~~i~~~~p~ 381 (772)
+- ..++..+..++..||.+..-+. ......++.++..+.. +...+...+...++.+.+.+|+
T Consensus 538 ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~ 617 (1204)
T 3a6p_A 538 VLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQ 617 (1204)
T ss_dssp HHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhH
Confidence 42 3477888888888888776543 3445556656655544 2234666677778888888765
Q ss_pred c----HHHHHHHHHHhc
Q 004132 382 T----YESIIATLCESL 394 (772)
Q Consensus 382 ~----~~~ii~~L~~~l 394 (772)
. ++.+...+...+
T Consensus 618 ~L~p~~~~i~~~~~~~l 634 (1204)
T 3a6p_A 618 LVLPNFDMLYNHVKQLL 634 (1204)
T ss_dssp HHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3 344555444444
No 117
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.66 E-value=1.4 Score=45.25 Aligned_cols=173 Identities=12% Similarity=0.120 Sum_probs=118.0
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHh----hcCCCCHHHHhHHHHHhcCCC----------hhh
Q 004132 12 TDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVK----DSQDPNPLIRALAVRTMGCIR----------VDK 77 (772)
Q Consensus 12 ~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~k----Dl~~~np~iralALrtl~~I~----------~~e 77 (772)
.++...+-++|+..+--|.=.+......+++.++-.+--+.| -+.|+|+-+-..+|..+..+- .+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 455666677788544445556666667677654333333333 234789988888888777751 233
Q ss_pred hHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCccc
Q 004132 78 ITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFE 157 (772)
Q Consensus 78 i~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~ 157 (772)
-+..++|.+..-+.|+..-||..+-..+..++..+|-. .+.+.+.+.+..+|+-++..++..+..+.+..+..
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--- 201 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--- 201 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---
Confidence 34567899999999999999999888887777765532 36778888889999998888877666655433210
Q ss_pred ccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHH---HHHhHhhcCCCHHHHHHHHHHHHHhhhhc
Q 004132 158 ITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIV---ERVTPRLQHANCAVVLSAVKMILQQMELI 229 (772)
Q Consensus 158 l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il---~~v~~~L~~~n~aVv~eaik~i~~~~~~i 229 (772)
+ ...+ ..+..++.++|.+|.-+|++++..++..+
T Consensus 202 --------------------------------~------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 202 --------------------------------P------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp --------------------------------G------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------c------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 0 0012 56677888999999999999998765443
No 118
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=92.47 E-value=0.64 Score=54.54 Aligned_cols=66 Identities=24% Similarity=0.273 Sum_probs=47.9
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHHHhhcccc---ccccchH-HHHHHhhcCCChhHHHHHHHHHHHHHhhC
Q 004132 85 PLQRCLKDDDPYVRKTAAICVAKLYDINAEL---VEDRGFL-ESLKDLISDNNPMVVANAVAALAEIEENS 151 (772)
Q Consensus 85 ~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~---~~~~~~~-~~L~~lL~D~d~~Vv~~av~aL~eI~~~~ 151 (772)
|+.+.|+++++-+|..|+.|+..+.. +|+. +...+.+ ..|..+|.|++..|+.+|+.+|.-++...
T Consensus 38 Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 38 PVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 34455888899999999999988875 5542 1122333 45678889999999999998888777654
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.98 E-value=0.35 Score=59.74 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=86.6
Q ss_pred CCcchHHHHHHHHHHhccC--------CCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhC-
Q 004132 21 ENLELKKLVYLYLINYAKS--------QPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLK- 91 (772)
Q Consensus 21 ~~~~lKrl~YL~l~~~~~~--------~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~- 91 (772)
++..+++.++|+++.+.+. .++..--+.+.+.+-+...+..-+-++|++||+++.++.++. +.+++.
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~----l~~~l~~ 482 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKK----IQRFLPG 482 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHH----HHTTSTT
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHH----HHHhhcC
Confidence 3456777888877665531 235455566667777777788889999999999999988776 445543
Q ss_pred ------CCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhh--cCCChhHHHHHHHHHHHH
Q 004132 92 ------DDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLI--SDNNPMVVANAVAALAEI 147 (772)
Q Consensus 92 ------d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL--~D~d~~Vv~~av~aL~eI 147 (772)
+....||..|+.|+.++-...|+.+ .+.+..+. .+.++.|+.+|+..|.+-
T Consensus 483 ~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v-----~~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 483 QGKSLDEYSTRVQAEAIMALRNIAKRDPRKV-----QEIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp SSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH-----HHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred ccccccccchHHHHHHHHHHHHhhhhchHHH-----HHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 2345799999999999887777654 45677776 467899999998888663
No 120
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.87 E-value=8.3 Score=38.56 Aligned_cols=164 Identities=14% Similarity=0.040 Sum_probs=110.3
Q ss_pred CCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHH-hhcCCCh
Q 004132 56 QDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKD-LISDNNP 134 (772)
Q Consensus 56 ~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~-lL~D~d~ 134 (772)
++.-..|-..|..-+.....+ ++.+....+..|..--||--|+..++++ . + . ...++.++. +-.|.+-
T Consensus 50 ~~gf~~~~~~a~~~~~~~~~~----~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~-~---~~~L~~ir~~va~D~~W 118 (240)
T 3l9t_A 50 EHGFKEEEQRALTDYKSNDGE----YIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--K-D---KEILIFMRDEVSKDNNW 118 (240)
T ss_dssp ----CHHHHHHHHHHHHSCHH----HHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--T-S---HHHHHHHHHTGGGCSCH
T ss_pred hcccHHHHHHHHHHHHhCCHH----HHHHHHHHHHhCcchHHHHHHHHHHHhc-c--C-c---HHHHHHHHHHhCCCCCc
Confidence 445556777777777776644 4445588889999889999999988877 3 2 1 236788887 6679999
Q ss_pred hHHHHHHHHHHHHHh-hCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccC--CHHHHHHHHHHHhHhhcCCC
Q 004132 135 MVVANAVAALAEIEE-NSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAA--DAREAENIVERVTPRLQHAN 211 (772)
Q Consensus 135 ~Vv~~av~aL~eI~~-~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~--~~~e~~~il~~v~~~L~~~n 211 (772)
.|+-.+..++.+++. .++.. .+..+..-..+.++|.+-.....++-++.. ...+...++..+.++..+.+
T Consensus 119 rVre~lA~a~~~~~~~~~pe~-------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s 191 (240)
T 3l9t_A 119 RVQEVLAKAFDEFCKKIEYKK-------ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVS 191 (240)
T ss_dssp HHHHHHHHHHHHHHHHHCTTT-------THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSC
T ss_pred cHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChH
Confidence 999999999999996 55432 133344445689999998888887654321 12223445566666666777
Q ss_pred HHHHHHHHHHHHHhhhhcCChHHHHHHH
Q 004132 212 CAVVLSAVKMILQQMELITSTDVVRNLC 239 (772)
Q Consensus 212 ~aVv~eaik~i~~~~~~i~~~~~~~~l~ 239 (772)
--|.-+....+-.+.. .+|+.+..++
T Consensus 192 ~yVrKSVan~LrD~SK--~~Pd~V~~~~ 217 (240)
T 3l9t_A 192 EYVRKSVGNALRDISK--KFPDLVKIEL 217 (240)
T ss_dssp HHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--hCHHHHHHHH
Confidence 7777777777776543 3777766543
No 121
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=91.50 E-value=0.42 Score=48.56 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=50.6
Q ss_pred HHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHh
Q 004132 49 NTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDL 128 (772)
Q Consensus 49 Ntl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~l 128 (772)
..+.+-++|+++.||..|.+.+. . +.+..+++|+++.||+.|+.. ..+ +.+..+
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l~----~-------~~L~~L~~D~d~~VR~~aA~~------l~~---------~~l~~l 154 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRLP----L-------EQLEQMAADRDYLVRAYVVQR------IPP---------GRLFRF 154 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHSC----T-------GGGGGGTTCSSHHHHHHHHHH------SCG---------GGGGGT
T ss_pred HHHHHHHcCCCHHHHHHHHHhCC----H-------HHHHHHHcCCCHHHHHHHHHh------cCH---------HHHHHH
Confidence 45667788999999999998762 1 236777899999999998863 112 234567
Q ss_pred hcCCChhHHHHHHHH
Q 004132 129 ISDNNPMVVANAVAA 143 (772)
Q Consensus 129 L~D~d~~Vv~~av~a 143 (772)
++|.|+.|..+++..
T Consensus 155 ~~D~d~~VR~~aa~~ 169 (244)
T 1lrv_A 155 MRDEDRQVRKLVAKR 169 (244)
T ss_dssp TTCSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHc
Confidence 888888888887765
No 122
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.36 E-value=3.5 Score=44.51 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=91.9
Q ss_pred hHHHHHhhcCCCcchHHHHHH-HHHH-hccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHH
Q 004132 11 FTDVVNCMQTENLELKKLVYL-YLIN-YAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPL 86 (772)
Q Consensus 11 f~~vi~l~~s~~~~lKrl~YL-~l~~-~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~--~~ei~~~l~~~v 86 (772)
-.+.+|-.+..... .|+-+| -+.. ..+.+|++.--....+..-..+++..+|...+.++.... ..+++..+++.+
T Consensus 27 v~~lln~A~~~~~~-~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L 105 (386)
T 3o2t_A 27 VVDLLNQAALITND-SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANL 105 (386)
T ss_dssp HHHHHHHHHHCCST-HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHhhhccChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455543331112 567666 4455 356777654434444455556788888888877776654 567888899999
Q ss_pred HhhhCCCChHHHHHHHHHHHHHHhh-------cccc---ccc-----cchHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004132 87 QRCLKDDDPYVRKTAAICVAKLYDI-------NAEL---VED-----RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (772)
Q Consensus 87 ~~~L~d~~pyVRK~Aa~~l~kl~~~-------~p~~---~~~-----~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~ 148 (772)
..+|.|.++.|-|+|+.|...+|+. +|.. .+. ..+.+.+..++...|.+|..+|+..+..+.
T Consensus 106 ~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 106 NMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 9999999999999999999999964 2321 111 112345566777889999999998877654
No 123
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=90.95 E-value=7 Score=39.74 Aligned_cols=124 Identities=18% Similarity=0.153 Sum_probs=91.6
Q ss_pred hHHHHHH-HHHH-hccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC--hhhhHHHHHHHHHhhhCCCChHHHHH
Q 004132 25 LKKLVYL-YLIN-YAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR--VDKITEYLCDPLQRCLKDDDPYVRKT 100 (772)
Q Consensus 25 lKrl~YL-~l~~-~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~--~~ei~~~l~~~v~~~L~d~~pyVRK~ 100 (772)
..|+-+| -+.. ..+.+|++.--....+..-..+++..+|-.-...+.... .++++..+.+.+..++.|.++.|-|+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~ 109 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKR 109 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4777777 3444 456678776666666666556788899988888876554 57889999999999999999999999
Q ss_pred HHHHHHHHHhh-------cccc---ccc-----cchHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 004132 101 AAICVAKLYDI-------NAEL---VED-----RGFLESLKDLISDNNPMVVANAVAALAEIE 148 (772)
Q Consensus 101 Aa~~l~kl~~~-------~p~~---~~~-----~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~ 148 (772)
|+.|...+|+. +|.. .+. ..+.+.+..++...|.+|..+|+..+..+.
T Consensus 110 ~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 110 VIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 99999999975 3321 111 123345566778889999999998877654
No 124
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=88.83 E-value=7.6 Score=47.82 Aligned_cols=164 Identities=14% Similarity=0.159 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhhhh----ccHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 004132 309 IDQVLLEFKEYATE----VDVDFVRKAVRAIGRCAIKLER--------AAERCISVLLELIKIKVNYVVQEAIIVIKDIF 376 (772)
Q Consensus 309 v~~Il~EL~~y~~~----~d~~~~~~~v~aIg~la~k~~~--------~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~ 376 (772)
-.++++++.+.+.. .++.++..++-++|.++.++-. ...++.+.+.+.+..+..+-..-.+.++.++
T Consensus 389 t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~- 467 (1056)
T 1lsh_A 389 TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA- 467 (1056)
T ss_dssp CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc-
Confidence 35566666666543 3566777788888888887632 2345555555555443222122222233333
Q ss_pred HhCcccHHHHHHHHHHhcccC-----C-hHHHHHHHHHHHhhhccccCCHHHHHHHHhhhC--CCCCHHHHHHHHHHHHH
Q 004132 377 RRYPNTYESIIATLCESLDTL-----D-EPEAKASMIWIIGEYAERIDNADELLESFLESF--PEEPAQVQLQLLTATVK 448 (772)
Q Consensus 377 ~~~p~~~~~ii~~L~~~l~~~-----~-~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f--~~e~~~vq~~lLta~~K 448 (772)
..|+ ++..+.++++.. . ...++.+++|.+..+... .+..+-+.++.-| ..+++++|.+++..+++
T Consensus 468 -g~p~----~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~--~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 468 -GQPN----SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR--DPRKVQEIVLPIFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp -TCGG----GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT--CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred -CChh----HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh--chHHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 2343 445555555321 1 235667788888888743 3555666677777 66888898877666655
Q ss_pred HhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHh
Q 004132 449 LFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLL 489 (772)
Q Consensus 449 l~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll 489 (772)
..|+ ..+++.+... +....|.+| +++.|..|-
T Consensus 541 ---t~P~---~~~l~~ia~~-l~~E~~~QV--~sfv~S~l~ 572 (1056)
T 1lsh_A 541 ---SKPS---VALVSMVAVR-LRREPNLQV--ASFVYSQMR 572 (1056)
T ss_dssp ---TCCC---HHHHHHHHHH-HTTCSCHHH--HHHHHHHHH
T ss_pred ---HCcC---HHHHHHHHHH-HhhCchHHH--HHHHHHHHH
Confidence 3463 4566777664 333345555 566665543
No 125
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=88.46 E-value=0.51 Score=55.43 Aligned_cols=145 Identities=15% Similarity=0.125 Sum_probs=85.1
Q ss_pred HHhhcCCCCHHHHhHHHHHhcCCChh-hhH-----HHHHH-HHHhhhCCCChHHHHHHHHHHHHHHhh-cccccc---cc
Q 004132 51 FVKDSQDPNPLIRALAVRTMGCIRVD-KIT-----EYLCD-PLQRCLKDDDPYVRKTAAICVAKLYDI-NAELVE---DR 119 (772)
Q Consensus 51 l~kDl~~~np~iralALrtl~~I~~~-ei~-----~~l~~-~v~~~L~d~~pyVRK~Aa~~l~kl~~~-~p~~~~---~~ 119 (772)
+.+.|+|+++-.|..|+.++++|... +.. +.++. .|.++|.|++.-||..|+-++..+... .++.+. ..
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~ 118 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRL 118 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHc
Confidence 45669999999999999999998632 222 22333 467889999999999999998777543 233221 12
Q ss_pred chHHHHHHhhcCC-------C--------------hhHHHHHHHHHHHHHhhCCCCcccc-cHHHHHHHHHHhhc---CC
Q 004132 120 GFLESLKDLISDN-------N--------------PMVVANAVAALAEIEENSSRPIFEI-TSHTLSKLLTALNE---CT 174 (772)
Q Consensus 120 ~~~~~L~~lL~D~-------d--------------~~Vv~~av~aL~eI~~~~~~~~~~l-~~~~~~~Ll~~L~~---~~ 174 (772)
+.++.|..+|... . +.+..+++.+|.-+++.+....-.+ ....+..|+..|.. ..
T Consensus 119 ~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~ 198 (684)
T 4gmo_A 119 DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAP 198 (684)
T ss_dssp THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSC
T ss_pred ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCc
Confidence 4455555554210 0 1233456666666666543211011 12345555555533 22
Q ss_pred hhHHHHHHHHHhccccCCHHH
Q 004132 175 EWGQVFILDALSRYKAADARE 195 (772)
Q Consensus 175 ew~qv~iL~~L~~~~~~~~~e 195 (772)
.=.+..++++|..+...+.+.
T Consensus 199 ~~v~~~a~~~L~~ls~dn~~~ 219 (684)
T 4gmo_A 199 QDIYEEAISCLTTLSEDNLKV 219 (684)
T ss_dssp HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccCHHH
Confidence 345667788887776555443
No 126
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=84.82 E-value=15 Score=38.65 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=57.3
Q ss_pred hhhCCCChHHHHHHHHHHHHHHhhccccccccchH-----HHHHHhhcCCChhHHHHHHHHHHHHHhhCCC-CcccccHH
Q 004132 88 RCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFL-----ESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEITSH 161 (772)
Q Consensus 88 ~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~-----~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~-~~~~l~~~ 161 (772)
..|.+++.-.+|.|...+.+++..+++.+.+ |+ ..|.+...+.+....+-++.||.++..+..+ ..+--...
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~E--FI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPE--FVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHH--HHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHH--HHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3444677888999999999999888887765 54 5677777888999999999999998764110 00101334
Q ss_pred HHHHHHHHhh
Q 004132 162 TLSKLLTALN 171 (772)
Q Consensus 162 ~~~~Ll~~L~ 171 (772)
.+.++...+.
T Consensus 203 fI~~lyslv~ 212 (339)
T 3dad_A 203 TIQWLYTLCA 212 (339)
T ss_dssp HHHHHHHGGG
T ss_pred HHHHHHHHHc
Confidence 5666666555
No 127
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=83.27 E-value=1.1 Score=54.65 Aligned_cols=136 Identities=10% Similarity=0.074 Sum_probs=88.2
Q ss_pred hHHHHHhhcCCCc-chHHH-HHHHHHHhccC--CCcHHHHHHHHHHhhcC-CCCHHHHhHHHHHh--------cCCChhh
Q 004132 11 FTDVVNCMQTENL-ELKKL-VYLYLINYAKS--QPDLAILAVNTFVKDSQ-DPNPLIRALAVRTM--------GCIRVDK 77 (772)
Q Consensus 11 f~~vi~l~~s~~~-~lKrl-~YL~l~~~~~~--~~dl~lL~iNtl~kDl~-~~np~iralALrtl--------~~I~~~e 77 (772)
+|.+..+...+|. ++.++ ++..+..++.. .++..-.+++.+.+-.+ +++. .|..+|..+ -.+...
T Consensus 762 lP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~- 839 (997)
T 1vsy_5 762 LPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE- 839 (997)
T ss_dssp TTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT-
T ss_pred HHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH-
Confidence 3334444555555 77888 66655555433 46667778888877776 6788 998888884 333333
Q ss_pred hHHHHHHHHHhhhCCCC-hHHHHHHHHHHHHHHhhc-c-ccccccchHHHHHHhhcC------------CChhHHHHHHH
Q 004132 78 ITEYLCDPLQRCLKDDD-PYVRKTAAICVAKLYDIN-A-ELVEDRGFLESLKDLISD------------NNPMVVANAVA 142 (772)
Q Consensus 78 i~~~l~~~v~~~L~d~~-pyVRK~Aa~~l~kl~~~~-p-~~~~~~~~~~~L~~lL~D------------~d~~Vv~~av~ 142 (772)
-...+...|.++|.|+. .-||..|+.++.-+.+-. + ..++ .++..+.+.+.. ++-..+++|+.
T Consensus 840 ~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~--~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVL 917 (997)
T 1vsy_5 840 EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLL--SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVL 917 (997)
T ss_dssp HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHH--HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHH--HHHHHHHHHHhhcccccccccccchHHHHHHHHHH
Confidence 33577888999999999 999999999999887665 5 3322 244444444311 11135567777
Q ss_pred HHHHHHhh
Q 004132 143 ALAEIEEN 150 (772)
Q Consensus 143 aL~eI~~~ 150 (772)
+|+-+...
T Consensus 918 gL~AlV~a 925 (997)
T 1vsy_5 918 GLGAIISA 925 (997)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 77666544
No 128
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=78.40 E-value=10 Score=37.38 Aligned_cols=150 Identities=9% Similarity=-0.026 Sum_probs=86.7
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCH-HHHhHHHHHhcCCC--hhhhHHHHHHHHHhhh
Q 004132 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP-LIRALAVRTMGCIR--VDKITEYLCDPLQRCL 90 (772)
Q Consensus 14 vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np-~iralALrtl~~I~--~~ei~~~l~~~v~~~L 90 (772)
+-.|.+++.+|.+-++-+++....+.-.+-.+-.+..+... -.|- .+=++| ++++.+- .++ .+.+.+.+.+
T Consensus 60 ~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~l~~~~~~l~~--~~nWd~~D~~a-~~~~~~~~~~~~---~~~~~i~~W~ 133 (220)
T 2b6c_A 60 IEAYYQKTEREYQYVAIDLALQNVQRFSLEEVVAFKAYVPQ--KAWWDSVDAWR-KFFGSWVALHLT---ELPTIFALFY 133 (220)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHTGGGCCHHHHHHGGGGTTT--TCSHHHHHHHH-HHHHHHHHHSGG---GHHHHHHHHT
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcc--CCcHHHHHHHH-HHHHHHHHHChH---HHHHHHHHHH
Confidence 34567777777777777777655433222223233333333 2343 333344 4343331 121 1334488999
Q ss_pred CCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHh
Q 004132 91 KDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTAL 170 (772)
Q Consensus 91 ~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L 170 (772)
.|++.++|+.|+.+.....+ . .-.+ ...+.+..++.|++-.|.-+.--+|.++...++. .+...+ .-
T Consensus 134 ~s~~~w~rR~ai~~~l~~~~-~-~~~~--~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~--------~v~~fl-~~ 200 (220)
T 2b6c_A 134 GAENFWNRRVALNLQLMLKE-K-TNQD--LLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ--------WVEELM-KE 200 (220)
T ss_dssp TCSSHHHHHHHHHTTTTCGG-G-CCHH--HHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH--------HHHHHH-HH
T ss_pred cCCCHHHHHHHHHHHHHHHH-C-CCHH--HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH--------HHHHHH-hh
Confidence 99999999999998753321 1 1111 2456666688999999988888889999876542 233444 22
Q ss_pred hcCChhHHHHHH
Q 004132 171 NECTEWGQVFIL 182 (772)
Q Consensus 171 ~~~~ew~qv~iL 182 (772)
...++|..-+.+
T Consensus 201 ~~l~~~~~r~Ai 212 (220)
T 2b6c_A 201 LVLSPLAQREGS 212 (220)
T ss_dssp SCCCHHHHHHHT
T ss_pred ccCCHHHHHHHH
Confidence 345666655443
No 129
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=75.40 E-value=18 Score=33.91 Aligned_cols=100 Identities=13% Similarity=0.146 Sum_probs=64.8
Q ss_pred hHHHHH-hhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC-------hhhhH-HH
Q 004132 11 FTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR-------VDKIT-EY 81 (772)
Q Consensus 11 f~~vi~-l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~-------~~ei~-~~ 81 (772)
|-..|. +......+.---..+-++-..+.+++-+.-++-.|+|-++++||.++-+||..|-.+. -.+++ +.
T Consensus 16 ~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~ 95 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRD 95 (163)
T ss_dssp THHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 344453 4443333444444556777777778888889999999999999999999988774331 11222 34
Q ss_pred HHHHHHhhhCC-CChHHHHHHHHHHHHHHh
Q 004132 82 LCDPLQRCLKD-DDPYVRKTAAICVAKLYD 110 (772)
Q Consensus 82 l~~~v~~~L~d-~~pyVRK~Aa~~l~kl~~ 110 (772)
+...+.+++.. .++-||+++...+..-..
T Consensus 96 Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 96 FATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 44556666654 678888888776555443
No 130
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=74.92 E-value=25 Score=32.06 Aligned_cols=86 Identities=8% Similarity=0.088 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hh----hhH-HHHHHHHHhhhCCCCh
Q 004132 24 ELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD----KIT-EYLCDPLQRCLKDDDP 95 (772)
Q Consensus 24 ~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~---~~----ei~-~~l~~~v~~~L~d~~p 95 (772)
+.---+.+-++-....+++-+--++-.++|-++++||.+.-+||..|-.+. .+ +++ +.+...+.+++...++
T Consensus 20 ~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~ 99 (140)
T 3ldz_A 20 AEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHP 99 (140)
T ss_dssp SCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCH
T ss_pred CcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCH
Confidence 334445556777788888888889999999999999999888887664331 11 111 3344555666656778
Q ss_pred HHHHHHHHHHHHHH
Q 004132 96 YVRKTAAICVAKLY 109 (772)
Q Consensus 96 yVRK~Aa~~l~kl~ 109 (772)
-||++....+....
T Consensus 100 ~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 100 KVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888776665543
No 131
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=74.72 E-value=4.7 Score=40.43 Aligned_cols=73 Identities=8% Similarity=0.031 Sum_probs=49.3
Q ss_pred hcCCCCHHHHhHHHH----HhcCCC----hhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHH
Q 004132 54 DSQDPNPLIRALAVR----TMGCIR----VDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESL 125 (772)
Q Consensus 54 Dl~~~np~iralALr----tl~~I~----~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L 125 (772)
=+.|+|+..|-.|+- .|+... ...-.+.+...+...+.|++.||||...-++..+...+|+.+.. +++..
T Consensus 116 W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~~~--al~~~ 193 (235)
T 1t06_A 116 WIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLHEK--AVEIA 193 (235)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGHHH--HHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHHHH--HHHHH
Confidence 345777877777777 545433 23445566666777888888888888888888888888877664 55544
Q ss_pred HHh
Q 004132 126 KDL 128 (772)
Q Consensus 126 ~~l 128 (772)
..+
T Consensus 194 ~~l 196 (235)
T 1t06_A 194 KEV 196 (235)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 132
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=74.07 E-value=5.7 Score=39.30 Aligned_cols=83 Identities=11% Similarity=0.070 Sum_probs=57.4
Q ss_pred HHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhc
Q 004132 33 LINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDIN 112 (772)
Q Consensus 33 l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~ 112 (772)
+..+...+|+... ..+.+=+.|+|+.+|=.|+-.+-.-....-.+.+.+.+..++.|++-||||..+-++--+++.+
T Consensus 114 ~~~~~~~~~~~~~---~~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~ 190 (220)
T 2b6c_A 114 FGSWVALHLTELP---TIFALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN 190 (220)
T ss_dssp HHHHHHHSGGGHH---HHHHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHChHHHH---HHHHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhC
Confidence 3334445665332 2356667889998876666544322333334556666777999999999999999999999999
Q ss_pred cccccc
Q 004132 113 AELVED 118 (772)
Q Consensus 113 p~~~~~ 118 (772)
|+.+..
T Consensus 191 ~~~v~~ 196 (220)
T 2b6c_A 191 PQWVEE 196 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987653
No 133
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=72.09 E-value=26 Score=39.62 Aligned_cols=127 Identities=11% Similarity=0.084 Sum_probs=69.2
Q ss_pred cCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHHHHHHHHHhhhCC---CCh
Q 004132 19 QTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKD---DDP 95 (772)
Q Consensus 19 ~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~~l~~~v~~~L~d---~~p 95 (772)
..+.-+.+.=|-|++.-+.+--.+ .--+++.+.+-|+|.+..||+.|..+|.-+..++....+...+=.+|.+ -++
T Consensus 273 ~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLSA 351 (800)
T 3oc3_A 273 DSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELISV 351 (800)
T ss_dssp GCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCCT
T ss_pred CCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccch
Confidence 444455555555555533111111 3445667777777777777777777777775544455544444444443 222
Q ss_pred HHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHH
Q 004132 96 YVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEI 147 (772)
Q Consensus 96 yVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI 147 (772)
-+ .....-+++++...++...++..++.|...|..+=+.|+.+++.++..+
T Consensus 352 ST-gSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 352 SK-TSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp TH-HHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTC
T ss_pred hh-HHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Confidence 11 1222234555555544444445666777777777777777766666443
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=71.75 E-value=32 Score=31.71 Aligned_cols=104 Identities=12% Similarity=0.004 Sum_probs=70.7
Q ss_pred hhHHHHH-hhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---h----hhh-HH
Q 004132 10 LFTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---V----DKI-TE 80 (772)
Q Consensus 10 lf~~vi~-l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~---~----~ei-~~ 80 (772)
-|-..|. +......+.---..+-++-....+++-.--++-.++|-++++||.+.-+||..|-.+. . .++ .+
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~ 90 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKF 90 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhH
Confidence 3444444 4333343444445567788888888889999999999999999999999998775431 1 122 24
Q ss_pred HHHHHHHhhhCC------CChHHHHHHHHHHHHHHhhcc
Q 004132 81 YLCDPLQRCLKD------DDPYVRKTAAICVAKLYDINA 113 (772)
Q Consensus 81 ~l~~~v~~~L~d------~~pyVRK~Aa~~l~kl~~~~p 113 (772)
.+...+.+++.+ .++-||++....+..-....+
T Consensus 91 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 91 RFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp HHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 455667777764 578899998877766554443
No 135
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=71.56 E-value=4 Score=40.82 Aligned_cols=134 Identities=10% Similarity=0.107 Sum_probs=84.5
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHhccC-CCcHHHHHHHHHHhhcCCCCHH-HHhHHHHHhcCCC--hhhhHHHHHHHHHh
Q 004132 13 DVVNCMQTENLELKKLVYLYLINYAKS-QPDLAILAVNTFVKDSQDPNPL-IRALAVRTMGCIR--VDKITEYLCDPLQR 88 (772)
Q Consensus 13 ~vi~l~~s~~~~lKrl~YL~l~~~~~~-~~dl~lL~iNtl~kDl~~~np~-iralALrtl~~I~--~~ei~~~l~~~v~~ 88 (772)
.+-.|..+...|.+-++-.++..+.+. .++. +-.+..+... -.|-. +-.+|-+.++.+. .++ .+.+.+.+
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-l~~~~~~l~~--~~nWd~~D~~a~~~~g~~~~~~p~---~~~~~l~~ 138 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINETH-IPFLEELIVT--KSWWDSVDSIVPTFLGDIFLKHPE---LISAYIPK 138 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG-HHHHHHHHTS--SCCHHHHHHHTTTHHHHHHHHCGG---GGGGTHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHcc--CCChHHHHHhhHHHHHHHHHHCHH---HHHHHHHH
Confidence 444577887777776666666654432 3332 2233445443 34543 3455545444432 233 12344888
Q ss_pred hhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcc
Q 004132 89 CLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIF 156 (772)
Q Consensus 89 ~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~ 156 (772)
.+.|.++++|+.|+.+....+. ..+. . .+...+..++.|++..|.-+.--+|.++...++....
T Consensus 139 W~~s~~~w~rR~ai~~~l~~~~-~~d~-~--~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~ 202 (232)
T 3jxy_A 139 WIASDNIWLQRAAILFQLKYKQ-KMDE-E--LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVW 202 (232)
T ss_dssp HHHSSCHHHHHHHHHTTTTCGG-GCCH-H--HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHh-CCCH-H--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 9999999999999998765432 2221 1 2567888899999999988888899999988765443
No 136
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=70.02 E-value=60 Score=29.39 Aligned_cols=84 Identities=12% Similarity=0.111 Sum_probs=48.1
Q ss_pred ccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHH
Q 004132 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (772)
Q Consensus 249 Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~ 328 (772)
|-+++|++++.||..+..+++....-|..++. +++=++-| ..-+...+..++
T Consensus 51 l~~~n~~~ql~AL~LLe~~vkNcG~~f~~eva------------s~~Fl~el----------------~~l~~~~~~~Vk 102 (140)
T 3ldz_A 51 VNHKDPHVAMQALTLLGACVSNCGKIFHLEVC------------SRDFASEV----------------SNVLNKGHPKVC 102 (140)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHS------------SHHHHHHH----------------HHHHHHSCHHHH
T ss_pred HcCCChHHHHHHHHHHHHHHHhcCHHHHHHHh------------hHHHHHHH----------------HHHhccCCHHHH
Confidence 33578888888988888888776555543321 11112222 222223567888
Q ss_pred HHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhc
Q 004132 329 RKAVRAIGRCAIKLERAAE-RCISVLLELIKIK 360 (772)
Q Consensus 329 ~~~v~aIg~la~k~~~~~~-~~vd~Ll~ll~~~ 360 (772)
+++...|..++..|....+ .++..+.+.|+..
T Consensus 103 ~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~ 135 (140)
T 3ldz_A 103 EKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQ 135 (140)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHc
Confidence 8888888888887754432 2233334444433
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=69.65 E-value=53 Score=30.64 Aligned_cols=86 Identities=12% Similarity=0.099 Sum_probs=50.9
Q ss_pred ccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHH
Q 004132 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (772)
Q Consensus 249 Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~ 328 (772)
|-+++|++++.||..+..+++.....|..++. +++-|+-|.++++. ..+..++
T Consensus 61 l~~~n~~vql~AL~LLd~~vkNcG~~Fh~eva------------s~~Fl~el~~l~~~---------------~~~~~Vk 113 (163)
T 1x5b_A 61 VNHKVPHVALQALTLLGACVANCGKIFHLEVC------------SRDFATEVRAVIKN---------------KAHPKVC 113 (163)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHT------------SHHHHHHHHHHHHT---------------TCCHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHh------------hHHHHHHHHHHHcc---------------CCCHHHH
Confidence 33578999999999999988876555543321 22333333333322 2466788
Q ss_pred HHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhcc
Q 004132 329 RKAVRAIGRCAIKLERAAE-RCISVLLELIKIKV 361 (772)
Q Consensus 329 ~~~v~aIg~la~k~~~~~~-~~vd~Ll~ll~~~~ 361 (772)
+++..-|..|+..|....+ .++.-+.+.|+..|
T Consensus 114 ~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G 147 (163)
T 1x5b_A 114 EKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEG 147 (163)
T ss_dssp HHHHHHHHHHHHHTTTCSTTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcC
Confidence 8888888888887754322 23333444444443
No 138
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=68.96 E-value=14 Score=36.74 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=50.0
Q ss_pred CCCCHHHHhHHHHHhcCCC---hhhhHHHHHHHHHhhhC-CCChHHH-HHHHHHHHHHHhhccccccccchHHHHHHhhc
Q 004132 56 QDPNPLIRALAVRTMGCIR---VDKITEYLCDPLQRCLK-DDDPYVR-KTAAICVAKLYDINAELVEDRGFLESLKDLIS 130 (772)
Q Consensus 56 ~~~np~iralALrtl~~I~---~~ei~~~l~~~v~~~L~-d~~pyVR-K~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~ 130 (772)
.++....|.+|+..+.... .++-.+. +...+. ..+.-|- --|...+++++..+|+.+ .+.+.....
T Consensus 71 ~~~~~E~r~~ai~~l~~~~k~~~~~~l~~----~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~~-----~~~l~~W~~ 141 (232)
T 3jxy_A 71 DLPEREFQAAALDIMQKYKKHINETHIPF----LEELIVTKSWWDSVDSIVPTFLGDIFLKHPELI-----SAYIPKWIA 141 (232)
T ss_dssp TSSBHHHHHHHHHHHHHTGGGCCGGGHHH----HHHHHTSSCCHHHHHHHTTTHHHHHHHHCGGGG-----GGTHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHccCCChHHHHHhhHHHHHHHHHHCHHHH-----HHHHHHHhc
Confidence 4456678999998886431 2333333 233332 3555543 333456678888888742 355778888
Q ss_pred CCChhHHHHHHHHH
Q 004132 131 DNNPMVVANAVAAL 144 (772)
Q Consensus 131 D~d~~Vv~~av~aL 144 (772)
|.|+-++..|+..+
T Consensus 142 s~~~w~rR~ai~~~ 155 (232)
T 3jxy_A 142 SDNIWLQRAAILFQ 155 (232)
T ss_dssp SSCHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHH
Confidence 99999988887655
No 139
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=65.30 E-value=1.4e+02 Score=37.16 Aligned_cols=109 Identities=7% Similarity=0.081 Sum_probs=55.2
Q ss_pred HhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHH
Q 004132 87 QRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKL 166 (772)
Q Consensus 87 ~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~L 166 (772)
...+.=....+++-.+.++..+..-+ +++.....|.++|.+ |+......+-+|..++-. -++..+...+.
T Consensus 163 ~~vl~vap~~lQ~diI~sLPeIl~ds----~H~~v~~~L~~lL~~-~~~L~~~iLdaLs~L~Ls-----~~~l~~vr~~v 232 (1323)
T 3s4w_B 163 MQLISVAPVNLQHDFITSLPEILGDS----QHANVGKELGELLVQ-NTSLTVPILDVFSSLRLD-----PNFLSKIRQLV 232 (1323)
T ss_dssp HHHHHHSCTTTHHHHHHTHHHHSCGG----GHHHHHHHHHHHHHH-CSTTHHHHHHHHHHSCCC-----HHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHhHHHhcch----hhHHHHHHHHHHHhc-CcchHHHHHHHHHcCCCC-----HHHHHHHHHHH
Confidence 33333333466666666555554221 111244555555544 444455555555544211 01223344556
Q ss_pred HHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhh
Q 004132 167 LTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRL 207 (772)
Q Consensus 167 l~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L 207 (772)
+..|..++.+.--.++++|-..... .++.+++..+...|
T Consensus 233 l~~L~s~~~e~LP~lIkFLL~s~t~--~~~~evI~~LR~~L 271 (1323)
T 3s4w_B 233 MGKLSSVRLEDFPVIVKFLLHSVTD--TTSLEVIAELRENL 271 (1323)
T ss_dssp HHSTTSSCTTHHHHHHHHHHHSCSS--TTHHHHHHHHHHHH
T ss_pred HHHhccCChhhhHHHHHHHHHhCCH--hhHHHHHHHHHHHc
Confidence 6666777777777777777766533 34555555554433
No 140
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=63.47 E-value=99 Score=29.02 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=53.2
Q ss_pred ccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhh-hhccHHH
Q 004132 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA-TEVDVDF 327 (772)
Q Consensus 249 Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~-~~~d~~~ 327 (772)
+-+.++++++.||..+..+++.....|..++. +++-|+-|.++++.. |. ...+..+
T Consensus 59 l~~~n~~vql~AL~LLd~~vkNCG~~Fh~eva------------s~~Fl~eL~kl~~~k-----------~~~~~~~~~V 115 (171)
T 1juq_A 59 IQSPQEWEALQALTVLEACMKNCGRRFHNEVG------------KFRFLNELIKVVSPK-----------YLGDRVSEKV 115 (171)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHT------------SHHHHHHHHHHHCCC-----------CCCTTSCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHh------------hHHHHHHHHHHhccc-----------cCCCCCCHHH
Confidence 33678999999999999988876555544321 223333344443321 21 2356788
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcc
Q 004132 328 VRKAVRAIGRCAIKLERAAERCISVLLELIKIKV 361 (772)
Q Consensus 328 ~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~ 361 (772)
+.+++..|..|+..|..... +..+.+.|+..|
T Consensus 116 k~kil~li~~W~~~f~~~~~--i~~~y~~Lk~~G 147 (171)
T 1juq_A 116 KTKVIELLYSWTMALPEEAK--IKDAYHMLKRQG 147 (171)
T ss_dssp HHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHCC
Confidence 88888888888888765432 333444444433
No 141
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=63.05 E-value=1.5e+02 Score=31.02 Aligned_cols=114 Identities=16% Similarity=0.282 Sum_probs=76.0
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhCccc--------HHHHHHHHHHhcccCChHHHHHHHHHHHhhhccccC---
Q 004132 350 ISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT--------YESIIATLCESLDTLDEPEAKASMIWIIGEYAERID--- 418 (772)
Q Consensus 350 vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~--------~~~ii~~L~~~l~~~~~p~a~~~~iwilGEy~~~i~--- 418 (772)
+..+.+.++...=.|..++...+++++.+++.. ++.....+-..+++ ..--.|+-.+-++||.--.-.
T Consensus 166 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S-~NYVTkRQSlKLLgelLldr~N~~ 244 (341)
T 1upk_A 166 FYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYVTKRQSLKLLGELLLDRHNFT 244 (341)
T ss_dssp GGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHSGGGHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC-CcchhHHHHHHHHHHHHhCchHHH
Confidence 335667777777778999999999999887643 22333333333333 333457778889999642111
Q ss_pred ------CHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 004132 419 ------NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLN 467 (772)
Q Consensus 419 ------~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~ 467 (772)
+.++-|..++.-+.+.+..+|..+.. +.|+|...|.. .+ -|..+|.
T Consensus 245 vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFh-VFKvFVANP~K-~~-~I~~IL~ 296 (341)
T 1upk_A 245 IMTKYISKPENLKLMMNLLRDKSRNIQFEAFH-VFKVFVANPNK-TQ-PILDILL 296 (341)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHH-HHHHHHHCSSC-CH-HHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHhcCchhchhhhhhh-heeeeeeCCCC-Ch-HHHHHHH
Confidence 23567788888888899999987765 78999999974 44 4444543
No 142
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=61.56 E-value=83 Score=28.86 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=48.5
Q ss_pred ccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhh-hhccHHH
Q 004132 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA-TEVDVDF 327 (772)
Q Consensus 249 Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~-~~~d~~~ 327 (772)
+-+.+|++++.||..+..+++....-|..++. +++-++-|.+++.+. |. ...+..+
T Consensus 57 l~~~n~~v~l~AL~LLe~cvkNCG~~fh~eia------------s~~Fl~eL~kl~~~k-----------~~~~~~~~~V 113 (149)
T 3g2s_A 57 IQSPQEWEAIQALTVLETCMKSCGKRFHDEVG------------KFRFLNELIKVVSPK-----------YLGSRTSEKV 113 (149)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHT------------SHHHHHHHHHHHCTT-----------TTGGGSCHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHh------------hHHHHHHHHHHHccc-----------ccCCCCCHHH
Confidence 33678889999998888888876655544331 123333344444332 32 2457788
Q ss_pred HHHHHHHHHHHHHhhhhhH
Q 004132 328 VRKAVRAIGRCAIKLERAA 346 (772)
Q Consensus 328 ~~~~v~aIg~la~k~~~~~ 346 (772)
+.++...|..|+..|+...
T Consensus 114 k~kil~li~~W~~~f~~~p 132 (149)
T 3g2s_A 114 KNKILELLYSWTVGLPEEV 132 (149)
T ss_dssp HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHhCCCc
Confidence 8888888888888876544
No 143
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=60.86 E-value=23 Score=35.19 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=49.8
Q ss_pred HHHHhhhCCCChHHHHHHHH----HHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCC
Q 004132 84 DPLQRCLKDDDPYVRKTAAI----CVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR 153 (772)
Q Consensus 84 ~~v~~~L~d~~pyVRK~Aa~----~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~ 153 (772)
+.+.+.+.|.+.++|+.|+. -+..+..+.++.-....+++.+...+.|.+..|.-+.--+|.++...++.
T Consensus 111 ~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 111 DVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHH
Confidence 44678889999999999999 44442222222111123667777788999999998888889999887653
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.23 E-value=59 Score=32.06 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=62.4
Q ss_pred HHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC----h---hhh-HHHHHHH
Q 004132 14 VVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR----V---DKI-TEYLCDP 85 (772)
Q Consensus 14 vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~----~---~ei-~~~l~~~ 85 (772)
|-+.....+.+.---..+.+.-....+++-+--++-.|+|-++++||.++-+||..|-.+. . .++ .+.+...
T Consensus 13 i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~ 92 (226)
T 3zyq_A 13 LDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEE 92 (226)
T ss_dssp HHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHH
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHH
Confidence 3344444444444445567777777778888899999999999999999999998775541 0 111 1223334
Q ss_pred HHhhhCC-CChHHHHHHHHHHHHHH
Q 004132 86 LQRCLKD-DDPYVRKTAAICVAKLY 109 (772)
Q Consensus 86 v~~~L~d-~~pyVRK~Aa~~l~kl~ 109 (772)
+.+++.. .++-||++++..+....
T Consensus 93 l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 93 LKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4444433 67788888777665544
No 145
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=58.55 E-value=1.1e+02 Score=27.95 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=54.8
Q ss_pred ccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhh-hhccHHH
Q 004132 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYA-TEVDVDF 327 (772)
Q Consensus 249 Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~-~~~d~~~ 327 (772)
+-+++|++++.||..+..+++....-|..++. +++-|+-|.+++..+ |. ...+..+
T Consensus 47 l~~~n~~vql~AL~LLe~~vkNCG~~fh~eva------------s~~Fl~eL~kl~~~k-----------~~~~~~~~~V 103 (148)
T 1mhq_A 47 IQSPQEKEALYALTVLEMCMNHCGEKFHSEVA------------KFRFLNELIKVLSPK-----------YLGSWATGKV 103 (148)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHT------------SHHHHHHHHHTTCCS-----------TTSCCCCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHh------------hHHHHHHHHHHHccc-----------cCCCCCCHHH
Confidence 34678999999999999998876555544321 233344445554432 22 1257788
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcc
Q 004132 328 VRKAVRAIGRCAIKLERAAERCISVLLELIKIKV 361 (772)
Q Consensus 328 ~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~ 361 (772)
+.++..-|..|+..|..... +..+.+.|+..|
T Consensus 104 k~kil~li~~W~~~f~~~p~--i~~~y~~Lk~~G 135 (148)
T 1mhq_A 104 KGRVIEILFSWTVWFPEDIK--IRDAYQMLKKQG 135 (148)
T ss_dssp HHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCch--HHHHHHHHHHcC
Confidence 88888888888888765443 333444444443
No 146
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=57.01 E-value=18 Score=38.05 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=39.2
Q ss_pred EEEEeeeCCeeEEEEEEEecCCCCccccceeecc------CccCcccCCC--------CCC---CcCCCCCeeeEEEee
Q 004132 650 GAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNK------NTFGLAAGGA--------LQV---PQLQPGTSGRTLLPM 711 (772)
Q Consensus 650 ~~~~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~------n~fgl~~~~~--------~~~---~~l~p~~~~~~~~~l 711 (772)
+++|.-.+..+.|++++||++..++.-=.++... .-+-..+..+ +.+ .++.||++.++++-.
T Consensus 256 ~A~Y~vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGETr~~~v~a 334 (382)
T 1yew_A 256 DATYRVPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVDVTA 334 (382)
T ss_dssp EEEEESSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTCEEEEEEEE
T ss_pred ccEEecCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCceeEEEEEe
Confidence 4556555668899999999999887644444332 2222222221 121 279999999888764
No 147
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=56.55 E-value=1.9e+02 Score=30.20 Aligned_cols=138 Identities=10% Similarity=0.063 Sum_probs=73.2
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHH-----HHHhhcCCCCHHHHhHHHHHhcCCChh-----hhH--H
Q 004132 13 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVN-----TFVKDSQDPNPLIRALAVRTMGCIRVD-----KIT--E 80 (772)
Q Consensus 13 ~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iN-----tl~kDl~~~np~iralALrtl~~I~~~-----ei~--~ 80 (772)
++++-+.+.+-..+|-.-.-+..+...+.+++--.|+ .|.+=..+...-+.+.|||+++.+..- .++ +
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 3444444554444444444455544455555444333 344555666777788888888777644 333 3
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccc----cc---------hHHHHHHhhc---CCChhHHHHHHHHH
Q 004132 81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVED----RG---------FLESLKDLIS---DNNPMVVANAVAAL 144 (772)
Q Consensus 81 ~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~----~~---------~~~~L~~lL~---D~d~~Vv~~av~aL 144 (772)
..+.-|-..+.+.++-|-|+|.--+..+...++..... -. ..+.|..+|. ..|..+..+|++++
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 45555666666677777777666555555444322110 00 0123444554 45566666666666
Q ss_pred HHHHhh
Q 004132 145 AEIEEN 150 (772)
Q Consensus 145 ~eI~~~ 150 (772)
..+...
T Consensus 282 N~lL~~ 287 (339)
T 3dad_A 282 NKTLAA 287 (339)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555443
No 148
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=55.47 E-value=59 Score=29.82 Aligned_cols=83 Identities=10% Similarity=0.019 Sum_probs=60.4
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCC----Ch---hhhH-HHHHHHHHhhhCC------C
Q 004132 28 LVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCI----RV---DKIT-EYLCDPLQRCLKD------D 93 (772)
Q Consensus 28 l~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I----~~---~ei~-~~l~~~v~~~L~d------~ 93 (772)
-..+-++-..+.+++-+--++-.++|=++++||.++-+||..|-.+ +. .+++ +.+...+.+++.+ .
T Consensus 20 ~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~ 99 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWA 99 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCC
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCC
Confidence 3455677777777888888999999999999999999999877443 11 2232 5566667888764 4
Q ss_pred ChHHHHHHHHHHHHHHh
Q 004132 94 DPYVRKTAAICVAKLYD 110 (772)
Q Consensus 94 ~pyVRK~Aa~~l~kl~~ 110 (772)
++-||+++...+..-..
T Consensus 100 ~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 100 TGKVKGRVIEILFSWTV 116 (148)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 78999998776655443
No 149
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=54.36 E-value=1.5e+02 Score=31.80 Aligned_cols=135 Identities=11% Similarity=0.217 Sum_probs=78.6
Q ss_pred HHHHHHHhhccc-hhHHHHHHHHHHHHHhCcc-cHHHHHHHHHHhc---ccCC-hHHHHHHHHHHHhhhccccCC-HHHH
Q 004132 351 SVLLELIKIKVN-YVVQEAIIVIKDIFRRYPN-TYESIIATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADEL 423 (772)
Q Consensus 351 d~Ll~ll~~~~~-~v~~e~i~~l~~i~~~~p~-~~~~ii~~L~~~l---~~~~-~p~a~~~~iwilGEy~~~i~~-~~~~ 423 (772)
+.+.+++-.... +-+.|....+..|++.+.- +.+.-...+.+.| -... -+.-..-+++|+-.|.+.-+. +..+
T Consensus 218 nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v 297 (392)
T 2jak_A 218 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV 297 (392)
T ss_dssp HHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH
Confidence 344455443222 2346777778888877631 1111111222222 1111 111134567777777654332 6788
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHH---HHHHHHhhhcCCCChHHHhhHHHHH
Q 004132 424 LESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQM---IQVVLNNATVETDNPDLRDRAYIYW 486 (772)
Q Consensus 424 L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~---v~~vl~~~~~~s~~~dvrdRA~~y~ 486 (772)
++.++..++-.++.-+...|.-+..+....+.+..+.. +-+.+..|. +|.+..|-+||..+|
T Consensus 298 i~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci-~S~hfqVAErAL~~w 362 (392)
T 2jak_A 298 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH-TCSSHHHHHHHHGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHh
Confidence 89999888887777777788878777766554323333 223345565 578999999999998
No 150
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=54.32 E-value=2.1e+02 Score=31.30 Aligned_cols=123 Identities=11% Similarity=0.223 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHhCcc-cHHHHHHHHHHhc---ccCC-hHHHHHHHHHHHhhhccccCC-HHHHHHHHhhhCCCCCHH
Q 004132 364 VVQEAIIVIKDIFRRYPN-TYESIIATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADELLESFLESFPEEPAQ 437 (772)
Q Consensus 364 v~~e~i~~l~~i~~~~p~-~~~~ii~~L~~~l---~~~~-~p~a~~~~iwilGEy~~~i~~-~~~~L~~l~~~f~~e~~~ 437 (772)
-..|....+..|++.+.- +.+.-...+.+.| -... -+.-..-+++|+-.|.+.-+. +..+++.++..++-.++.
T Consensus 220 GIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~ 299 (449)
T 2npp_B 220 GIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSP 299 (449)
T ss_dssp CHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHH
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCch
Confidence 356777788888777531 1121122222222 1111 112235577888888765433 678999999999998988
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHH---HHHHHHhhhcCCCChHHHhhHHHHHH
Q 004132 438 VQLQLLTATVKLFLKKPTEGPQQM---IQVVLNNATVETDNPDLRDRAYIYWR 487 (772)
Q Consensus 438 vq~~lLta~~Kl~~~~p~~~~~~~---v~~vl~~~~~~s~~~dvrdRA~~y~~ 487 (772)
-+...|.-+..+.-..+.+..+.. +-+.+..|. +|.+..|-+||..+|.
T Consensus 300 KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci-~S~hfqVAErAL~~w~ 351 (449)
T 2npp_B 300 KEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYWN 351 (449)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-TCSCHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHC
Confidence 888888888888765544323332 333445565 5789999999999883
No 151
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=54.30 E-value=2.1e+02 Score=29.93 Aligned_cols=105 Identities=19% Similarity=0.352 Sum_probs=64.9
Q ss_pred HHHhHhhcCCCHHHHHHHHHHHHHhh----------hhcCChHHHHHHHHhcccchhhccC-CchhHHHHHHHHHHHHHh
Q 004132 201 ERVTPRLQHANCAVVLSAVKMILQQM----------ELITSTDVVRNLCKKMAPPLVTLLS-AEPEIQYVALRNINLIVQ 269 (772)
Q Consensus 201 ~~v~~~L~~~n~aVv~eaik~i~~~~----------~~i~~~~~~~~l~~~~~~~L~~Lls-~~~~iryvaL~~l~~i~~ 269 (772)
.....+|.+.|......++|++..++ .++.+++.++- +..||. +..+|||-|...+...+.
T Consensus 212 ~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl--------~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 212 SEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKL--------MMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHH--------HHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHH--------HHHHhcCchhchhhhhhhheeeeee
Confidence 33345677778888888888776643 23445544442 345674 688999999998888775
Q ss_pred hChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhc--cHHHHHH---HHHHHHH
Q 004132 270 RRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEV--DVDFVRK---AVRAIGR 337 (772)
Q Consensus 270 ~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~--d~~~~~~---~v~aIg~ 337 (772)
+| +-|.-| .+||.+ |-+.+++=|..|..+. |..|..+ +|+.|..
T Consensus 284 -NP--------------~K~~~I----~~IL~~-----Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~ 332 (341)
T 1upk_A 284 -NP--------------NKTQPI----LDILLK-----NQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRD 332 (341)
T ss_dssp -CS--------------SCCHHH----HHHHHH-----THHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred -CC--------------CCChHH----HHHHHH-----HHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHh
Confidence 33 223223 234433 6677777777777654 6677665 5555543
No 152
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=53.00 E-value=67 Score=30.24 Aligned_cols=103 Identities=8% Similarity=-0.002 Sum_probs=68.6
Q ss_pred hHHHH-HhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hh----hhH-HH
Q 004132 11 FTDVV-NCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD----KIT-EY 81 (772)
Q Consensus 11 f~~vi-~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~---~~----ei~-~~ 81 (772)
|-..| ++.+....+.---..+-++-..+.+++-.--++-.++|-++++||.++-+||..|-.+. .. +++ +.
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~ 93 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFR 93 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 33444 34443333444444557777777788888889999999999999999999998775432 11 222 34
Q ss_pred HHHHHHhhhCC------CChHHHHHHHHHHHHHHhhcc
Q 004132 82 LCDPLQRCLKD------DDPYVRKTAAICVAKLYDINA 113 (772)
Q Consensus 82 l~~~v~~~L~d------~~pyVRK~Aa~~l~kl~~~~p 113 (772)
+...+.+++.. .++-||+++...+..-....+
T Consensus 94 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 94 FLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp HHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 45567777752 468999998887766554433
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.45 E-value=1.5e+02 Score=29.16 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=44.3
Q ss_pred ccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHhhhhccHHHH
Q 004132 249 LLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFV 328 (772)
Q Consensus 249 Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~~~ 328 (772)
|-+.+|++++.||..+..+++.-..-|..++. +++-|+-|.+|++ ...+..++
T Consensus 54 l~~~n~~v~l~aL~LLe~~vkNcG~~f~~eia------------s~~fl~~l~~l~~---------------~~~~~~Vk 106 (226)
T 3zyq_A 54 VNDKNPHVALYALEVMESVVKNCGQTVHDEVA------------NKQTMEELKDLLK---------------RQVEVNVR 106 (226)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHS------------SHHHHHHHHHHHH---------------HCCCHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcchHHHHhhc------------cHHHHHHHHHHhc---------------cCCCHHHH
Confidence 33678999999999998888875554443321 1122222332221 23567888
Q ss_pred HHHHHHHHHHHHhhhhh
Q 004132 329 RKAVRAIGRCAIKLERA 345 (772)
Q Consensus 329 ~~~v~aIg~la~k~~~~ 345 (772)
++++..|..++..|...
T Consensus 107 ~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 107 NKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 88888888888877543
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=48.42 E-value=1.1e+02 Score=29.96 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=53.6
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCC---hh----hhH-HHHHHHHHhhhC-CCChHHHH
Q 004132 29 VYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIR---VD----KIT-EYLCDPLQRCLK-DDDPYVRK 99 (772)
Q Consensus 29 ~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~---~~----ei~-~~l~~~v~~~L~-d~~pyVRK 99 (772)
..+.+.-..+.+++-+--++-.|+|=++++||.++-+||..|-.+. .+ +++ +.+...+.+++. ..++-||+
T Consensus 25 ~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~ 104 (220)
T 1dvp_A 25 SILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQ 104 (220)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHH
Confidence 3456777777778888889999999999999999999998775532 11 111 223444555554 35678888
Q ss_pred HHHHHHHH
Q 004132 100 TAAICVAK 107 (772)
Q Consensus 100 ~Aa~~l~k 107 (772)
++..-+..
T Consensus 105 kil~li~~ 112 (220)
T 1dvp_A 105 KMLELVQT 112 (220)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87655443
No 155
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=46.92 E-value=3.3e+02 Score=31.18 Aligned_cols=123 Identities=10% Similarity=0.129 Sum_probs=78.1
Q ss_pred ccccHHHHHHHHHHh-h-hhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCccc
Q 004132 305 SDRNIDQVLLEFKEY-A-TEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNT 382 (772)
Q Consensus 305 n~~Nv~~Il~EL~~y-~-~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~ 382 (772)
+......+|.-++.+ - ...+..|++.-+.=|+.++.-.+.....|+..|+.-+...... ...+=..++.|++-.|-.
T Consensus 130 d~~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~~~yl~~vl~mLV~~F~~~~~~-~~~~H~~L~~Il~lvP~s 208 (649)
T 3tj1_A 130 ESSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSIPKWWQDVSMILVSCFILPIKQ-TVCHHDMLKYFLRMIPSS 208 (649)
T ss_dssp CSGGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHCGGG
T ss_pred CchhHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccCCCcc-cHHHHHHHHHHHHHcCCC
Confidence 344566788887766 2 3567889888888888888776666666777766655532211 112334678888888988
Q ss_pred HHHHHHHHHHhcccCChHHH-----HHHHHHHHhhhccccCCHHHHHHHHhhhC
Q 004132 383 YESIIATLCESLDTLDEPEA-----KASMIWIIGEYAERIDNADELLESFLESF 431 (772)
Q Consensus 383 ~~~ii~~L~~~l~~~~~p~a-----~~~~iwilGEy~~~i~~~~~~L~~l~~~f 431 (772)
...+...|.+.+-...++.. ...++|+.+ |+..+ ..+++..++++.
T Consensus 209 ~~~L~~iL~~~FP~~~~s~~~~~~Yv~NLLrl~~-Y~PeL--~~~Il~LIierl 259 (649)
T 3tj1_A 209 MGFIDTYLAKFFPNKNDTRRKLVNYTSNLLKLRG-YCSEL--GFQIWSLLIEKI 259 (649)
T ss_dssp HHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHH-HCGGG--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHh-hchHH--HHHHHHHHHHHH
Confidence 77777778777754444432 244556664 77654 445555555543
No 156
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=44.64 E-value=5.6e+02 Score=31.99 Aligned_cols=97 Identities=22% Similarity=0.186 Sum_probs=49.1
Q ss_pred chHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHH
Q 004132 120 GFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENI 199 (772)
Q Consensus 120 ~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~i 199 (772)
.+.+.+.++|.-....+..-.+.+|=||...+.. ......|...+.+ ++-..+-+|++|+.+.- +++...++
T Consensus 157 ~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds~H------~~v~~~L~~lL~~-~~~L~~~iLdaLs~L~L-s~~~l~~v 228 (1323)
T 3s4w_B 157 DLTAQMMQLISVAPVNLQHDFITSLPEILGDSQH------ANVGKELGELLVQ-NTSLTVPILDVFSSLRL-DPNFLSKI 228 (1323)
T ss_dssp HHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGGGH------HHHHHHHHHHHHH-CSTTHHHHHHHHHHSCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhHHHhcchhh------HHHHHHHHHHHhc-CcchHHHHHHHHHcCCC-CHHHHHHH
Confidence 3445555555433345555555555555543321 1123334444433 33457777788777743 45555555
Q ss_pred HHHHhHhhcCCCHHHHHHHHHHHHH
Q 004132 200 VERVTPRLQHANCAVVLSAVKMILQ 224 (772)
Q Consensus 200 l~~v~~~L~~~n~aVv~eaik~i~~ 224 (772)
.+.+...|.+.+...+=..||.+++
T Consensus 229 r~~vl~~L~s~~~e~LP~lIkFLL~ 253 (1323)
T 3s4w_B 229 RQLVMGKLSSVRLEDFPVIVKFLLH 253 (1323)
T ss_dssp HHHHHHSTTSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhhHHHHHHHHH
Confidence 5565555555544444444455544
No 157
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=43.38 E-value=3.4e+02 Score=29.13 Aligned_cols=134 Identities=12% Similarity=0.242 Sum_probs=82.5
Q ss_pred HHHHHHHhhccc-hhHHHHHHHHHHHHHhC--cccHHHHHHHHHHhc---ccCC-hHHHHHHHHHHHhhhccccCC-HHH
Q 004132 351 SVLLELIKIKVN-YVVQEAIIVIKDIFRRY--PNTYESIIATLCESL---DTLD-EPEAKASMIWIIGEYAERIDN-ADE 422 (772)
Q Consensus 351 d~Ll~ll~~~~~-~v~~e~i~~l~~i~~~~--p~~~~~ii~~L~~~l---~~~~-~p~a~~~~iwilGEy~~~i~~-~~~ 422 (772)
+.+.+++-.... +-..|....+..|++.+ |-..+. ...+.+.| -... -+.-..-+++|+-.|.+.-+. +..
T Consensus 173 nif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeeh-k~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~ 251 (403)
T 3fga_B 173 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEH-KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP 251 (403)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHH-HHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHH-HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH
Confidence 344444433222 23567788888888876 322221 11222222 1111 111235577888888765433 678
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHH---HHHHHhhhcCCCChHHHhhHHHHH
Q 004132 423 LLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMI---QVVLNNATVETDNPDLRDRAYIYW 486 (772)
Q Consensus 423 ~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v---~~vl~~~~~~s~~~dvrdRA~~y~ 486 (772)
+++.++..++-.++.-+...|.-+..+.-..+.+..+... -+.+..|. +|.+..|-+||..+|
T Consensus 252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci-~S~hfqVAErAL~~w 317 (403)
T 3fga_B 252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCV-SSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-TCSCHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHh
Confidence 9999999999999988888999888887665543233322 23344455 578999999999998
No 158
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=41.32 E-value=1.3e+02 Score=26.60 Aligned_cols=33 Identities=3% Similarity=0.171 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcc
Q 004132 329 RKAVRAIGRCAIKLERAAERCISVLLELIKIKV 361 (772)
Q Consensus 329 ~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~ 361 (772)
++.|..+..++......++..++++.+.++...
T Consensus 21 ~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~ 53 (132)
T 4flb_A 21 MESIQGLSSWCIENKKHHSTIVYHWMKWLRRSA 53 (132)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC
Confidence 566677777777776677777777777666543
No 159
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=41.28 E-value=31 Score=42.01 Aligned_cols=117 Identities=9% Similarity=0.039 Sum_probs=75.3
Q ss_pred HHHHhccCCCcHHHHHHHHHHhhcCCCC-HHHHhHHHHHhcCC--Ch-h-hhHHHHHHHHHhhh-C-----------CCC
Q 004132 32 YLINYAKSQPDLAILAVNTFVKDSQDPN-PLIRALAVRTMGCI--RV-D-KITEYLCDPLQRCL-K-----------DDD 94 (772)
Q Consensus 32 ~l~~~~~~~~dl~lL~iNtl~kDl~~~n-p~iralALrtl~~I--~~-~-ei~~~l~~~v~~~L-~-----------d~~ 94 (772)
|..++.--.++.-..+.+.+.+-|.|++ ..||-.|-.+|+.+ +. + ...+.++...++.+ + +.+
T Consensus 829 ~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~ 908 (997)
T 1vsy_5 829 LSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKT 908 (997)
T ss_dssp HHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchH
Confidence 3344444444544566788889999999 99999999999877 33 2 44445555555544 3 111
Q ss_pred hHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcC--CChhHHHHHH-HHHHHHH
Q 004132 95 PYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISD--NNPMVVANAV-AALAEIE 148 (772)
Q Consensus 95 pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D--~d~~Vv~~av-~aL~eI~ 148 (772)
--.|-.|++|++-+..-.|=.++.+.|++.+...|.. .+|+.+..++ .+|.|-.
T Consensus 909 ~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~i~~tvk~tlseFk 965 (997)
T 1vsy_5 909 DIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGMTGNAAKNTISEFK 965 (997)
T ss_dssp CHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSSHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 1577889999999999999887544699777665542 2344444333 3444443
No 160
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=38.24 E-value=31 Score=33.96 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=43.3
Q ss_pred CCeEEEEE-EeeeCCeeEEEEEEEecCCCCccccceeec---cCccCcccCCCC-CCC---cCCCCCeeeEEEeeeecC-
Q 004132 645 QGLQIGAE-LTRQDGQVFYSMLFENNTQTPLDGFMIQFN---KNTFGLAAGGAL-QVP---QLQPGTSGRTLLPMVLFQ- 715 (772)
Q Consensus 645 ~gl~i~~~-~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n---~n~fgl~~~~~~-~~~---~l~p~~~~~~~~~l~~~~- 715 (772)
.|+.|.++ +...+++-...++++|.+..+ +.+|.= .|.=+ .+..++ ..| .|+||+...+.|-.....
T Consensus 12 agv~l~~TRvIy~~~~k~~sl~l~N~~~~p---~LvQswv~~~~~~~-~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~~L 87 (218)
T 4ay0_A 12 YGVTIGESRIIYPLDAAGVMVSVKNTQDYP---VLIQSRIYDENKEK-ESEDPFVVTPPLFRLDAKQQNSLRIAQAGGVF 87 (218)
T ss_dssp -CEEESCCEEEEETTCSCEEEEEECCSSSC---EEEEEEEECTTSCC-CSSCSEEEESSEEEECTTCEEEEEEEECSCCC
T ss_pred eeEEECceEEEECCCCcEEEEEEEcCCCCC---EEEEEEEecCCCCc-cccCCEEECCCeEEeCCCCceEEEEEecCCCC
Confidence 35555554 333455567778888876654 444521 11101 111221 123 888999877777543221
Q ss_pred CC---------------CCCCCCcchhhhhhcCCCCeEEEeeccc
Q 004132 716 NM---------------SAGPPSSLLQVAVKNNQQPVWYFNDKIS 745 (772)
Q Consensus 716 ~~---------------~~~~~~~~lqvAik~n~~~v~yf~~~~p 745 (772)
|. ......+.||+|+++.+. +||---.++
T Consensus 88 P~DRESlf~lnv~eIPp~~~~~~n~lqia~r~rIK-lFyRP~~L~ 131 (218)
T 4ay0_A 88 PRDKESLKWLCVKGIPPKDEDIWVDVQFAINNCIK-LLVRPNELK 131 (218)
T ss_dssp CSSSCEEEEEEEEEECC--------------CEEE-EEEECTTCC
T ss_pred CcCcEEEEEEEEEecCCCCccccceeEEEEEEEEE-EEEcCcccC
Confidence 10 001123459999999997 888654443
No 161
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=37.84 E-value=3.2e+02 Score=27.20 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcc-ccCC---HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhc
Q 004132 404 ASMIWIIGEYAE-RIDN---ADELLESFLESFPEEPAQVQLQLLTATVKLFLK 452 (772)
Q Consensus 404 ~~~iwilGEy~~-~i~~---~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~ 452 (772)
...+-+|||--. .+-. ..+++..++.++.+++.+.=+.+|+.+.+...+
T Consensus 147 lg~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~~~e~~iE~l~~lL~tvG~~L~~ 199 (260)
T 1hu3_A 147 IGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDF 199 (260)
T ss_dssp HHHHHHHHHHHTTTCSCHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCC
T ss_pred HhHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 356788999432 2222 357788888887766777777888888887765
No 162
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=36.73 E-value=87 Score=33.33 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=38.9
Q ss_pred EEEEeeeCCeeEEEEEEEecCCCCccccceeecc------CccCccc---CC-----CCCCC-cCCCCCeeeEEEeee
Q 004132 650 GAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNK------NTFGLAA---GG-----ALQVP-QLQPGTSGRTLLPMV 712 (772)
Q Consensus 650 ~~~~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~------n~fgl~~---~~-----~~~~~-~l~p~~~~~~~~~l~ 712 (772)
++.|.-.+..+.+++++||++..++.-=.+|... +.+-..+ .. -+.-| +++||++.++++-+.
T Consensus 290 ~A~Y~vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~pI~PGETrt~~V~a~ 367 (419)
T 3rfr_A 290 GGVYKVPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDDVIAPGESKEIVVKIQ 367 (419)
T ss_dssp EEEEESSSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCCCBCTTCEEEEEEEEE
T ss_pred ceEEecCCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCCCcCCCcceEEEEEee
Confidence 4556555678999999999999987654444332 2221110 00 01112 799999998887653
No 163
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=35.07 E-value=3.4e+02 Score=26.68 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHHHhcc-cccHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHhhhhhHHHH
Q 004132 290 IYVKMEKLEIMIKLAS-DRNIDQVLLEFKEYAT--EVDVDFVRKAVRAIGRCAIKLERAAERC 349 (772)
Q Consensus 290 ~~Ik~~kL~lL~~L~n-~~Nv~~Il~EL~~y~~--~~d~~~~~~~v~aIg~la~k~~~~~~~~ 349 (772)
..+++..-.+|-+|+. ++|++.++.++.+.+. ..+.+....+|+.|-.=|..-+..+.-|
T Consensus 17 ~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~Y 79 (234)
T 3rk6_A 17 STLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMG 79 (234)
T ss_dssp -CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHH
T ss_pred HHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHH
Confidence 3477777788999974 8999999999998753 3356777788888766665433333333
No 164
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=34.22 E-value=2.4e+02 Score=24.74 Aligned_cols=82 Identities=11% Similarity=0.136 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHH---HHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCC
Q 004132 399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQ---LLTATVKLFLKKPTEGPQQMIQVVLNNATVETDN 475 (772)
Q Consensus 399 ~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~---lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~ 475 (772)
.+.+.....|++-- . ..+.++.+.+.+.+...+++-|+. ++..+++-..+.......+.+..++..+.....+
T Consensus 21 ~~sI~~~s~w~l~h-~---~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~~ 96 (132)
T 4flb_A 21 MESIQGLSSWCIEN-K---KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKD 96 (132)
T ss_dssp HHHHHHHHHHHHHT-G---GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHh-H---HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhCC
Confidence 44466777788842 2 235666666666666666666554 4455555443321111334444444444333345
Q ss_pred hHHHhhHHH
Q 004132 476 PDLRDRAYI 484 (772)
Q Consensus 476 ~dvrdRA~~ 484 (772)
++.|++..-
T Consensus 97 ~~~~~kl~~ 105 (132)
T 4flb_A 97 PSVSKSVER 105 (132)
T ss_dssp TTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 667766543
No 165
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=33.98 E-value=1.9e+02 Score=26.08 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=48.6
Q ss_pred HHHHhcCCChhhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHH
Q 004132 66 AVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAA 143 (772)
Q Consensus 66 ALrtl~~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~a 143 (772)
|++.++.++-+++.+ +++.+..-|+|.|.-|.+..+--+.+ .|+. +++.+.+.|+..|..=....+..
T Consensus 17 a~~~L~~~~~~~i~p-~lp~LL~WLQD~NWPvA~~i~~~L~~----~~~~-----l~p~I~~vl~s~D~~W~ywil~~ 84 (134)
T 3ut4_A 17 TIDQLCKLIDNEIEP-IIFDLLKWLQDYNWPIAKDILPVVVL----HQSI-----AMPHILTILQGNDIMWKYWVIKL 84 (134)
T ss_dssp THHHHTTCCHHHHHH-HHHHHHGGGSCTTSTTHHHHHHHHHH----THHH-----HHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHH-HHHHHHHHHhcCCCccHHHHHHHHHH----ccHh-----hHHHHHHHHHcCChHHHHHHHHH
Confidence 677788887666655 46789999999999887765554443 3432 67888888888888877766543
No 166
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=32.42 E-value=94 Score=27.53 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=36.9
Q ss_pred CCeeEEEEEEEecCCCCccccceeeccCc--cCcccCCCCCCCcCCCCCeeeEEEeee
Q 004132 657 DGQVFYSMLFENNTQTPLDGFMIQFNKNT--FGLAAGGALQVPQLQPGTSGRTLLPMV 712 (772)
Q Consensus 657 ~~~~~~~~~~tN~~~~~~~~f~~q~n~n~--fgl~~~~~~~~~~l~p~~~~~~~~~l~ 712 (772)
++.+.+..++.|.....-..|.+.|--+. -|=...+...++.|.+|++..++++..
T Consensus 15 g~~vTvsatVkN~Gt~~s~a~~V~~yl~~p~~gg~~vgt~tv~~LaaG~s~t~~v~~~ 72 (122)
T 2kut_A 15 GEEITVSARVTNRGAAEAHNVPVAVYLGNPAQGGVEIGRDTISRIPVGGTGLARVQWK 72 (122)
T ss_dssp TCEEEEEEEEECCSSSCBCCCCEEECSSCTTTCCCCCBCCCCSCBCTTCEEECCEEEE
T ss_pred CCeEEEEEEEEeCCCcccCcEEEEEEeCCCccCCeEEeeEEccccCCCCeEEEEEEEe
Confidence 34667888888988877777777665533 111122234578999999998666654
No 167
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=31.73 E-value=1.7e+02 Score=30.39 Aligned_cols=181 Identities=15% Similarity=0.221 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcc---------cccHHHHHHHHH-HhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc
Q 004132 291 YVKMEKLEIMIKLAS---------DRNIDQVLLEFK-EYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360 (772)
Q Consensus 291 ~Ik~~kL~lL~~L~n---------~~Nv~~Il~EL~-~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~ 360 (772)
.||++.|.++-...+ ++-+..+++-.+ +|-+..+..=-.+.+..+..+..|+.......+..+++
T Consensus 44 ~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~----- 118 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD----- 118 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHH-----
Q ss_pred cchhHHHHHHHHHHHHHhCcccH-------HHHHHHHHHhcccCChHHHH---HHHHHHH-hhhccccCCHHHHHHHHhh
Q 004132 361 VNYVVQEAIIVIKDIFRRYPNTY-------ESIIATLCESLDTLDEPEAK---ASMIWII-GEYAERIDNADELLESFLE 429 (772)
Q Consensus 361 ~~~v~~e~i~~l~~i~~~~p~~~-------~~ii~~L~~~l~~~~~p~a~---~~~iwil-GEy~~~i~~~~~~L~~l~~ 429 (772)
.|-+-++..+.+=+..||+-| +.+.......+-.+..+.-+ .+++|.+ -..-+--+.+-+++..+++
T Consensus 119 --~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 119 --AVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp --HHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Q ss_pred hCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHHhhHHHHHHHhc
Q 004132 430 SFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLS 490 (772)
Q Consensus 430 ~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvrdRA~~y~~Ll~ 490 (772)
++.. .+++..+.-.+... ++++.++...|..+.-.-.+..+..+.+|+.
T Consensus 197 n~~~-~~~~~~~Fy~~fy~-----------~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~ 245 (321)
T 1w9c_A 197 NVAQ-EEAAAQSFYQTYFC-----------DILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp HHHH-CHHHHHHHHHHHHH-----------HHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHhc-ChHHHHHHHHHHHH-----------HHHHHHHHHHhCchhhccHHHHHHHHHHHHH
No 168
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=31.59 E-value=4.9e+02 Score=27.52 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHHhhCh---hhhhhh--c-ceeeeccCCcHhHHHHHHHHHHHhccc---cc-HHHHHHHHHHhh
Q 004132 253 EPEIQYVALRNINLIVQRRP---TILAHE--I-KVFFCKYNDPIYVKMEKLEIMIKLASD---RN-IDQVLLEFKEYA 320 (772)
Q Consensus 253 ~~~iryvaL~~l~~i~~~~p---~~~~~~--~-~if~~~~~d~~~Ik~~kL~lL~~L~n~---~N-v~~Il~EL~~y~ 320 (772)
+.+++|.+++++..|..... .++.+. + .+..|+.+..+.+|..++++|..+|.- +| .+.|++.+..|.
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~ 210 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERA 210 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHH
Confidence 44677777777766643221 122211 1 234566677788999999999988853 45 788888776654
No 169
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=31.00 E-value=1.8e+02 Score=26.64 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhccccccccchHHHHHHhhc-CCChhHHHHHHHHHHHHHhhCCCCcc
Q 004132 99 KTAAICVAKLYDINAELVEDRGFLESLKDLIS-DNNPMVVANAVAALAEIEENSSRPIF 156 (772)
Q Consensus 99 K~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~-D~d~~Vv~~av~aL~eI~~~~~~~~~ 156 (772)
....+-+.-+.+..++...+ .+..|++-|. ..|+.|+..|+.+|..+.+ +|+..|
T Consensus 34 w~~~leicD~I~~~~~~~k~--a~ral~krl~~~~n~~v~l~AL~LLd~~vk-NcG~~f 89 (157)
T 1elk_A 34 WALNMEICDIINETEEGPKD--ALRAVKKRIVGNKNFHEVMLALTVLETCVK-NCGHRF 89 (157)
T ss_dssp HHHHHHHHHHHHHSSSHHHH--HHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HSCHHH
T ss_pred HHHHHHHHHHHhCCCccHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHH-HhCHHH
Confidence 45566666666666654443 6677888886 6899999999887755544 455433
No 170
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=29.74 E-value=5.2e+02 Score=30.21 Aligned_cols=67 Identities=12% Similarity=0.186 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHh
Q 004132 159 TSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQ 225 (772)
Q Consensus 159 ~~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~ 225 (772)
.......|.+.|...++-.+..+++-+-.+.....-.....++.+.-+-+..+..|..++.+.+-.+
T Consensus 489 d~~~~~~l~~~l~~i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~~ 555 (780)
T 1z5h_A 489 DDATFSDVMGHYRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYL 555 (780)
T ss_dssp CHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHGGGTTCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 3445666666665556666666655443332211111223334443333445677777777766543
No 171
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=28.23 E-value=5.8e+02 Score=31.69 Aligned_cols=249 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHhccCCCcHHHHHHHHHHhhcCCCC---HHHHhHHHHHhc-----CCChhhhHHHHHHHHHhhhCCCChHHHHHHHH
Q 004132 32 YLINYAKSQPDLAILAVNTFVKDSQDPN---PLIRALAVRTMG-----CIRVDKITEYLCDPLQRCLKDDDPYVRKTAAI 103 (772)
Q Consensus 32 ~l~~~~~~~~dl~lL~iNtl~kDl~~~n---p~iralALrtl~-----~I~~~ei~~~l~~~v~~~L~d~~pyVRK~Aa~ 103 (772)
.+........++..+....+.....+.+ |-+..+|..-|- ....-..++. -.....++...-.+-+..
T Consensus 349 Wlr~l~p~~~~v~~~ll~~V~~S~~g~d~Vv~gLV~LgF~LLds~~~k~~~~g~~~e~----~~~~~~~p~q~a~~LG~~ 424 (1308)
T 3s51_A 349 FLQTLVPQRTCVSTMILEVVRNSVHSWDHVTQGLIEFGFILMDSYGPKKILDGKAVEI----GTSLSKMTNQHACKLGAN 424 (1308)
T ss_dssp HHHHHSCCCCCHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHSCCTTSCC-------------CTHHHHHHHHHHHH
T ss_pred HHHhccCccchHHHHHHHHHhcCcccchhhHHHHHHHHHHHHhccCccccCCCccccc----ccccccChHHHHHHHHHH
Q ss_pred HHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCCcccccHHHHHHHHHHhhcCChhHHHHHHH
Q 004132 104 CVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILD 183 (772)
Q Consensus 104 ~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~~~~l~~~~~~~Ll~~L~~~~ew~qv~iL~ 183 (772)
-+.++|+.++....+ +++.+..-+-.....-+...+..|..|+...+-...+.. .+..++..+.....=.-..+++
T Consensus 425 IL~~~Fk~h~~~r~~--Iieqi~~RIv~~~~~~~s~~idlLs~lv~~~p~~l~e~s--kl~e~~dyl~~lp~~~a~~Ll~ 500 (1308)
T 3s51_A 425 ILLETFKIHEMIRQE--ILEQVLNRVVTRTSSPINHFLDLFSDIIMYAPLILQNCS--KVTETFDYLTFLPLQTVQGLLK 500 (1308)
T ss_dssp HHHHHHHHCGGGHHH--HHHHHHHHHHHCCSSCCHHHHHHHHHHHHHCHHHHSSCH--HHHGGGGGTTTSCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHH--HHHHHHHHHHhccCcchhHHHHHHHHHHHhccHHHHhhh--HHHHHHHHHhcCCHHHHHHHHH
Q ss_pred HHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcC---------------------------ChHHHH
Q 004132 184 ALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELIT---------------------------STDVVR 236 (772)
Q Consensus 184 ~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~---------------------------~~~~~~ 236 (772)
++.-...-+..-...++-.+..-+-++....+..|+..|+.++.... ++..-+
T Consensus 501 al~PLik~s~~lrD~lIlvLRKamf~re~~~R~~AV~GfL~lLk~~~~~~~~sSsq~sQs~~~sQ~~~~~~~~~~~~~Ne 580 (1308)
T 3s51_A 501 AVQPLLKISMSMRDSLILVLRKAMFASQLDARKSAVAGFLLLLKNFKVLGSLPSSQCTQSIGVTQVRVDVHSRYSAVANE 580 (1308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHEECCTTCC---------CCCEESSSCSSSCSSCCT
T ss_pred HHhHHHhcCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhhhhhhhcccccccccchh
Q ss_pred HHHHhcccchhhccCCchhHHHHHHHHHHHHHhhCh-------hhhhhhcceeeeccCC
Q 004132 237 NLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRP-------TILAHEIKVFFCKYND 288 (772)
Q Consensus 237 ~l~~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~p-------~~~~~~~~if~~~~~d 288 (772)
.++..+.+.|.+.++-..++|-.--..|..++..+| +++..|.+.||-...|
T Consensus 581 ~l~lEIlg~LRRcL~Qqa~VR~~LY~gl~~~v~~n~~l~~~vl~~L~~hf~~y~~~~~d 639 (1308)
T 3s51_A 581 TFCLEIIDSLKRSLGQQADIRLMLYDGFYDVLRRNSQLASSIMQTLFSQLKQFYEPEPD 639 (1308)
T ss_dssp THHHHHHHHHHGGGGSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHBCCSSC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHhcCCCcc
No 172
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=27.97 E-value=2.4e+02 Score=33.20 Aligned_cols=72 Identities=18% Similarity=0.329 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHhhcc---ccccccchHHHHHHhhcC---CChhHHHHHHHHHHHHH
Q 004132 76 DKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINA---ELVEDRGFLESLKDLISD---NNPMVVANAVAALAEIE 148 (772)
Q Consensus 76 ~ei~~~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p---~~~~~~~~~~~L~~lL~D---~d~~Vv~~av~aL~eI~ 148 (772)
.++++.+.|.+..++-+++..|...+..|+..+..+.| +++-. ..++.+...|.. ..+-=+.+|+.+|..++
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999 98764 567777777765 45555666666666554
No 173
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=27.39 E-value=3.3e+02 Score=24.83 Aligned_cols=106 Identities=10% Similarity=0.023 Sum_probs=64.8
Q ss_pred CCCccchhHHHHH-hhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcC-CCCHHHHhHHHHHhcCCC-------
Q 004132 4 GKDVSSLFTDVVN-CMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQ-DPNPLIRALAVRTMGCIR------- 74 (772)
Q Consensus 4 G~Dvs~lf~~vi~-l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~-~~np~iralALrtl~~I~------- 74 (772)
|...+.-+-..|. +.+....+.---.-+-++-..+.+++-+.-++-.++|-++ ++||.++-+||..|-.+.
T Consensus 10 ~~p~~s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~f 89 (157)
T 1elk_A 10 GNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRF 89 (157)
T ss_dssp SCGGGSHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCCCcHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 3444434445554 4443333333334456667777778888999999999998 589999988988775331
Q ss_pred hhhhH-HHHHHH-HHhhhC---CCChHHHHHHHHHHHHHH
Q 004132 75 VDKIT-EYLCDP-LQRCLK---DDDPYVRKTAAICVAKLY 109 (772)
Q Consensus 75 ~~ei~-~~l~~~-v~~~L~---d~~pyVRK~Aa~~l~kl~ 109 (772)
-.+++ +.+... +.+++. +++.-||+++...+..-.
T Consensus 90 h~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 90 HVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 11222 233444 455553 244589998877665544
No 174
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=27.38 E-value=2.8e+02 Score=25.01 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhc
Q 004132 327 FVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360 (772)
Q Consensus 327 ~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~ 360 (772)
.-+..|..|..+|...-..++.+++.+.+.+...
T Consensus 21 ~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~ 54 (145)
T 3d9j_A 21 ISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKC 54 (145)
T ss_dssp CCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3466788888888877666777777776666544
No 175
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=26.05 E-value=3e+02 Score=24.88 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=41.2
Q ss_pred cCChhHH-HHHHHHHhccccCCH-HHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHH
Q 004132 172 ECTEWGQ-VFILDALSRYKAADA-REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRN 237 (772)
Q Consensus 172 ~~~ew~q-v~iL~~L~~~~~~~~-~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~ 237 (772)
.-+||+- .+++.=++....... +...+|++.+..+|++.++-|++-|.+++-++... .++...+.
T Consensus 21 s~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~-Gs~~f~~~ 87 (140)
T 1vdy_A 21 SDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK-SGSEFRRE 87 (140)
T ss_dssp CSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT-SCHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh-CCHHHHHH
Confidence 3456642 344444444433222 33578999999999999999999999998876532 24444433
No 176
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=25.91 E-value=79 Score=34.86 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHHHhhcccc---ccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhh
Q 004132 93 DDPYVRKTAAICVAKLYDINAEL---VEDRGFLESLKDLISDNNPMVVANAVAALAEIEEN 150 (772)
Q Consensus 93 ~~pyVRK~Aa~~l~kl~~~~p~~---~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~ 150 (772)
.+|-+---|+.=++.+.+.+|+- +++-|..+.+..|+.++|+.|...|+.++..+..+
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 46777777788888999999973 34445567788999999999999999998877543
No 177
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=23.11 E-value=6.8e+02 Score=26.37 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=27.3
Q ss_pred eeeccCCcHhHHHHHHHHHHHhcccc---c-HHHHHHHHHHh
Q 004132 282 FFCKYNDPIYVKMEKLEIMIKLASDR---N-IDQVLLEFKEY 319 (772)
Q Consensus 282 f~~~~~d~~~Ik~~kL~lL~~L~n~~---N-v~~Il~EL~~y 319 (772)
..|+....+.+|..++++|..+|.-. . .+.|++.|..|
T Consensus 106 ~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~ 147 (386)
T 2bnx_A 106 VRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTER 147 (386)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 34555666789999999999988643 3 66777666654
No 178
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=22.10 E-value=5.5e+02 Score=29.98 Aligned_cols=126 Identities=9% Similarity=-0.047 Sum_probs=55.5
Q ss_pred HhhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHhCccc-HHHH---HHHHHH
Q 004132 318 EYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVV-QEAIIVIKDIFRRYPNT-YESI---IATLCE 392 (772)
Q Consensus 318 ~y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~-~e~i~~l~~i~~~~p~~-~~~i---i~~L~~ 392 (772)
+++...++--|..++.....+|..-.-....+++.+ ..+....+|++ ..+...+..+-+. ++. ..++ +..+.+
T Consensus 498 ~~l~~i~~~~Ra~li~D~~~l~~~g~~~~~~~l~l~-~~l~~E~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~ 575 (780)
T 1z5h_A 498 GHYRDLSPLDRIGLVDDLFAFLLSGHIDPETYRQRI-RNFFDDEDHNVITAIVGQMEYLRML-THAFDDDARAFCRSRMQ 575 (780)
T ss_dssp HTGGGCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH-GGGTTCCCHHHHHHHHHHHHHHHTT-CSTTHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHH-HHhccCCcHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHH
Confidence 334455666666666666666654333344555554 34555556654 3344444444322 222 2222 222223
Q ss_pred hcccCC---hHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 004132 393 SLDTLD---EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVK 448 (772)
Q Consensus 393 ~l~~~~---~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~K 448 (772)
.+..-+ ....|..++-..+.+++ +.+.+ .+.+.+.+..-++..|..++.+.+|
T Consensus 576 ~l~~~~~~~~~~~r~~~~~~a~~~~~--~~~~~-a~~~f~~~~~i~~~lr~~v~~~~~~ 631 (780)
T 1z5h_A 576 FLTGKQDENLKIALGRVSRLYVMVDE--SYAEE-MSKLFKDFDSAEPEMRSSIATAYAL 631 (780)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCH--HHHHH-HHTTGGGGGGSCHHHHHHHHHHHHH
T ss_pred HcCCCCChHHHHHHHHHHHHHHhcCC--HHHHH-HHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 332101 12234333333444442 11122 2222222333477888777777766
No 179
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=22.06 E-value=1.4e+02 Score=26.20 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=37.0
Q ss_pred CeeEEEEEEEecCCCCccccceeecc-CccCcccCCCCCCCcCCCCCeeeEEEeee
Q 004132 658 GQVFYSMLFENNTQTPLDGFMIQFNK-NTFGLAAGGALQVPQLQPGTSGRTLLPMV 712 (772)
Q Consensus 658 ~~~~~~~~~tN~~~~~~~~f~~q~n~-n~fgl~~~~~~~~~~l~p~~~~~~~~~l~ 712 (772)
.+..-.++++|.+..++ -|.++-+. +.|.+.|. ..-|.||++..+.|-+.
T Consensus 27 ~~~~~~l~L~N~s~~~v-aFKVKTT~p~~y~VrP~----~G~i~P~~s~~v~V~~~ 77 (128)
T 1z9l_A 27 DVVTTNLKLQNPSDRKV-CFKVKTTAPRRYCVRPN----SGVIDPGSIVTVSVMLQ 77 (128)
T ss_dssp SCEEEEEEEECCSSSCE-EEEEEESCGGGEEEESC----EEEECTTCEEEEEEEEC
T ss_pred ceEEEEEEEECCCCCeE-EEEEECCCCCceEEeCC----CcEECCCCeEEEEEEEC
Confidence 35678899999998764 47776554 46777664 34789999999888764
No 180
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=21.97 E-value=1.1e+02 Score=27.17 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcc
Q 004132 329 RKAVRAIGRCAIKLERAAERCISVLLELIKIKV 361 (772)
Q Consensus 329 ~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~ 361 (772)
+..|..+..++..+...++.+++++.+.++...
T Consensus 20 ~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~ 52 (135)
T 4fu3_A 20 QQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAK 52 (135)
T ss_dssp TTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555666666666666666666666665443
No 181
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2
Probab=21.43 E-value=23 Score=36.17 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=70.2
Q ss_pred CCeeEEEEEEEecCC-CCccccceeeccCccCcccCCCCCCCcCCCCCeeeEEEeeeecC--CCC-CCCCCcchhhhhhc
Q 004132 657 DGQVFYSMLFENNTQ-TPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQ--NMS-AGPPSSLLQVAVKN 732 (772)
Q Consensus 657 ~~~~~~~~~~tN~~~-~~~~~f~~q~n~n~fgl~~~~~~~~~~l~p~~~~~~~~~l~~~~--~~~-~~~~~~~lqvAik~ 732 (772)
.++++++..++|.-. +-+++..+++.- +-|.......+++.|+||++..+.+-+.... ... ...-...|...+|-
T Consensus 57 ~~hiVlQF~i~NTL~dq~LenVsV~~~~-~d~~~~~~~ipi~~L~~~~~g~~yV~l~~~~~~~~~~~~tf~~~LkF~vke 135 (275)
T 1r4x_A 57 TNHMVFQFDCTNTLNDQTLENVTVQMEP-TEAYEVLXYVPARSLPYNQPGTCYTLVALPKEDPTAVACTFSCMMKFTVKD 135 (275)
T ss_dssp SSEEEEEEEEEECCTTEEEEEEEEEEEE-SSSCEEEEEECEEEECTTCCEEEEEEEECCSSSTTCCCEEEEEEEEEEEEE
T ss_pred CCcEEEEEEeEEccCcEEEeeEEEEEEc-CCCceEEEeeeccccCCCCCccEEEEEEcCCCccccccceeEEEEEEEEEe
Confidence 569999999999554 688888888765 2233332224556999999988888887653 111 11234567777775
Q ss_pred CCCC------eEEEeeccccchh------cccCCCCChhhHHHhccccc
Q 004132 733 NQQP------VWYFNDKISLHVL------FTEDGRMERGSFLEVKTCSF 769 (772)
Q Consensus 733 n~~~------v~yf~~~~p~~~l------~~~~g~~~~~~F~~~W~~~~ 769 (772)
.|+ -==|...++++-+ |... +-..+|.+.|.+++
T Consensus 136 -~Dp~tGe~~deGyeDEY~lEdlel~~~D~i~p--~~~~nF~~~We~l~ 181 (275)
T 1r4x_A 136 -CDPTTGETDDEGYEDEYVLEDLEVTVADHIQK--VMKLNFEAAWDEVG 181 (275)
T ss_dssp -BCTTTCCBCSCCEEEEEECCCEEECGGGGEEE--CCCSCHHHHHHHHC
T ss_pred -ccCCCCCcCCCCccceEEccceeechhhEEee--cccCchHHHHHhcC
Confidence 221 1256777776654 2222 44568999999884
No 182
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=21.39 E-value=1.8e+02 Score=28.66 Aligned_cols=60 Identities=10% Similarity=0.190 Sum_probs=43.0
Q ss_pred HHhhhhccHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 004132 317 KEYATEVDVDFVRKAVRAIGRCAIKL----ERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFR 377 (772)
Q Consensus 317 ~~y~~~~d~~~~~~~v~aIg~la~k~----~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~ 377 (772)
.+|+...+.+-+.+++..+..++.+. ...++.|+.++-++++.+.+|+..| +.++..|+.
T Consensus 135 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Y~kvm~ki~~~g~~~~~~E-~~Rl~~~l~ 198 (240)
T 2qc7_A 135 GEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASE-MTRIARLIE 198 (240)
T ss_dssp HHHHHSCSHHHHHHHTTHHHHHTTCSCHHHHHHHHHHHHHHHHHHHSCTTSHHHH-HHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHh
Confidence 35666666666667766666665442 2567789999999998888888888 667777775
No 183
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=20.91 E-value=4e+02 Score=27.48 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=12.6
Q ss_pred CCCCccchhHHHHHhhcCC
Q 004132 3 VGKDVSSLFTDVVNCMQTE 21 (772)
Q Consensus 3 ~G~Dvs~lf~~vi~l~~s~ 21 (772)
.+|+.|.-|.++.+++++.
T Consensus 16 ~~yeFs~~F~~~r~ll~sg 34 (315)
T 3qml_C 16 GDYEFSSDFKEMRNIIDSN 34 (315)
T ss_dssp CCCTTHHHHHHHHHHHHHC
T ss_pred cccchHHHHHHHHHHHHcC
Confidence 4566777777777766653
No 184
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=20.59 E-value=3e+02 Score=23.15 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhhhhccHH
Q 004132 293 KMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVD 326 (772)
Q Consensus 293 k~~kL~lL~~L~n~~Nv~~Il~EL~~y~~~~d~~ 326 (772)
+--|=-|...|.|..+.+.|+.||.....++..+
T Consensus 29 ~YVAEyIvlLisNg~s~~sivqELssLFd~v~~~ 62 (104)
T 2v75_A 29 KYVAEYIVLLIVNGGTVESVVDELASLFDSVSRD 62 (104)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHCTTSCHH
T ss_pred HHHHHHhheeeeCCCChHHHHHHHHHHHccccHH
Confidence 3345567778899999999999999877776644
No 185
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=20.36 E-value=1.5e+02 Score=25.19 Aligned_cols=53 Identities=17% Similarity=0.414 Sum_probs=33.7
Q ss_pred CCeeEEEEEEEecCCCCcc---cc-------ceeecc-CccCcccCCCCCCC-cCCCCCeeeEEE
Q 004132 657 DGQVFYSMLFENNTQTPLD---GF-------MIQFNK-NTFGLAAGGALQVP-QLQPGTSGRTLL 709 (772)
Q Consensus 657 ~~~~~~~~~~tN~~~~~~~---~f-------~~q~n~-n~fgl~~~~~~~~~-~l~p~~~~~~~~ 709 (772)
.|.-.+.++++|....|+. +| +++|.. -.+|+...-+..-. ..+|||+.++.|
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~r~V~L 81 (101)
T 4ep8_B 17 TGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVEL 81 (101)
T ss_dssp TTCCEEEEEEEECSSSCEEEETTSCGGGSCTTEESCTTTTTTEEECSSTTCEEEECTTCEEEEEE
T ss_pred CCCCEEEEEEEeCCCcceEEccccChhHcCcceeecHhhccCceecccCCCeEeeCCCCeEEEEE
Confidence 4566899999999997773 33 344444 34555443222222 789999987765
Done!