BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004133
(772 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
Length = 215
Score = 100 bits (248), Expect = 4e-21, Method: Composition-based stats.
Identities = 63/181 (34%), Positives = 95/181 (52%), Gaps = 19/181 (10%)
Query: 29 ENWDKFFTIRGIGDS--FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL 86
E WD+ + +G DS ++W+ ++ R L P P +ILV GCGNS LS L
Sbjct: 8 EYWDQRY--QGAADSAPYDWFGDFSSFRALL-----EPELRPEDRILVLGCGNSALSYEL 60
Query: 87 YDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146
+ GF +T+VD+S VV++ M + +RW MD+ + F +FDV+L+KG LD
Sbjct: 61 FLGGFPNVTSVDYSSVVVAAM-QACYAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLD 118
Query: 147 ALMEPEL--------GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWK 198
AL+ E G +Q LSEV R+L GG+F+ +T A H + + +GW
Sbjct: 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWS 178
Query: 199 M 199
+
Sbjct: 179 L 179
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 24/152 (15%)
Query: 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEH 85
T+K WD T+ SF W Q + L+ L+ P IL GCG +L+E
Sbjct: 25 TAKNFWDA--TLYQDKHSFVW-----QYGEDLLQLL---NPQPGEFILDLGCGTGQLTEK 74
Query: 86 LYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145
+ +G + D + I + R+N + + V D + +V D+ D + L
Sbjct: 75 IAQSGAE-VLGTDNAATXI-EKARQNY---PHLHFDVADARNFRV--DKPLDAVFSNAXL 127
Query: 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177
+ EPE ++ + + LKSGG+FV
Sbjct: 128 HWVKEPEAA-------IASIHQALKSGGRFVA 152
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130
++L CG S L D GF + VD S+ I S++ + V D +
Sbjct: 41 KVLDLACGVGGFSFLLEDYGFE-VVGVDISEDXIRKAREYAKSRESNVEFIVGDARKLS- 98
Query: 131 FMDETFDVILDKGGLDALM--EP-ELGHKLGNQYLSEVKRLLKSGGKFV 176
F D+TFD ++ +D+++ EP EL NQ EV+R+LK GKF+
Sbjct: 99 FEDKTFDYVI---FIDSIVHFEPLEL-----NQVFKEVRRVLKPSGKFI 139
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130
++L GCG+ + L G+ + VD S+V I R + D+ + D++S+
Sbjct: 56 EVLDVGCGDGYGTYKLSRTGYKAV-GVDISEVXIQKGKERG--EGPDLSFIKGDLSSLP- 111
Query: 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180
F +E F+ I L+ EP + L+E+KR+LKS G + C+ +
Sbjct: 112 FENEQFEAIXAINSLEWTEEPL-------RALNEIKRVLKSDG-YACIAI 153
>pdb|3J1S|H Chain H, Structure Of Adeno-Associated Virus-2 In Complex With
Neutralizing Monoclonal Antibody A20
Length = 218
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNS 80
+ E+ ++ RG +EW+ W Q L+++ A T+ P L PGCG++
Sbjct: 88 TTEDTATYYCARG-DYGYEWFTYWGQ--GTLVTVSAAKTTPPSVYPLAPGCGDT 138
>pdb|2H6L|A Chain A, X-Ray Crystal Structure Of The Metal-Containing Protein
Af0104 From Archaeoglobus Fulgidus. Northeast Structural
Genomics Consortium Target Gr103.
pdb|2H6L|B Chain B, X-Ray Crystal Structure Of The Metal-Containing Protein
Af0104 From Archaeoglobus Fulgidus. Northeast Structural
Genomics Consortium Target Gr103.
pdb|2H6L|C Chain C, X-Ray Crystal Structure Of The Metal-Containing Protein
Af0104 From Archaeoglobus Fulgidus. Northeast Structural
Genomics Consortium Target Gr103
Length = 146
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 259 NQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDARE 318
+Q ++EY ++ LE L L K+ P C ++LG +G+ Y L A
Sbjct: 55 DQEKKEYVK-KELXEPLEILSLSGNVSXKDSKPFCHIHVLLGKDGEV---YGGHLFSAE- 109
Query: 319 NSGPFMYNCGVFIVPKT-RAHEWLFSSEEGQWLVVE 353
++ C VF++P + A E F + G +L +E
Sbjct: 110 -----VFACEVFVLPLSGEAPERAFDEQTGLFLWLE 140
>pdb|3S96|A Chain A, Crystal Structure Of 3b5h10
pdb|3S96|C Chain C, Crystal Structure Of 3b5h10
Length = 220
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 34 FFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPG 76
+F RG GD++ W+A W Q L+++ A T+ P L PG
Sbjct: 94 YFCARG-GDNYLWFAYWGQ--GTLVTVSAAKTTPPSVYPLAPG 133
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 374 MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVE----- 428
++EI LV++ PG + A++ + H VH A + G V
Sbjct: 371 INEINTRFKTLVEKTWPGDEKVWAKL-------AVVHDKQVHMANLCVVGGFAVNGVAAL 423
Query: 429 --DLVYENVDPEFSRIWPSE 446
DLV +++ PE+ ++WP++
Sbjct: 424 HSDLVVKDLFPEYHQLWPNK 443
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 374 MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVE----- 428
++EI LV++ PG + A++ + H VH A + G V
Sbjct: 372 INEINTRFKTLVEKTWPGDEKVWAKL-------AVVHDKQVHMANLCVVGGFAVNGVAAL 424
Query: 429 --DLVYENVDPEFSRIWPSE 446
DLV +++ PE+ ++WP++
Sbjct: 425 HSDLVVKDLFPEYHQLWPNK 444
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 374 MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVE----- 428
++EI LV++ PG + A++ + H VH A + G V
Sbjct: 371 INEINTRFKTLVEKTWPGDEKVWAKL-------AVVHDKQVHMANLCVVGGFAVNGVAAL 423
Query: 429 --DLVYENVDPEFSRIWPSE 446
DLV +++ PE+ ++WP++
Sbjct: 424 HSDLVVKDLFPEYHQLWPNK 443
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 374 MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRNVVHQATSSLTGPIIVE----- 428
++EI LV++ PG + A++ + H VH A + G V
Sbjct: 371 INEINTRFKTLVEKTWPGDEKVWAKL-------AVVHDKQVHMANLCVVGGFAVNGVAAL 423
Query: 429 --DLVYENVDPEFSRIWPSE 446
DLV +++ PE+ ++WP++
Sbjct: 424 HSDLVVKDLFPEYHQLWPNK 443
>pdb|4DCQ|B Chain B, Crystal Structure Of The Fab Fragment Of 3b5h10, An
Antibody-Specific For Extended Polyglutamine Repeats
(Orthorhombic Form)
Length = 218
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 34 FFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPG 76
+F RG G++F W+A W Q L+++ A T+ P L PG
Sbjct: 94 YFCARG-GNNFLWFAYWGQ--GTLVTVSAAKTTPPSVYPLAPG 133
>pdb|2VPW|A Chain A, Polysulfide Reductase With Bound Menaquinone
pdb|2VPW|E Chain E, Polysulfide Reductase With Bound Menaquinone
pdb|2VPX|A Chain A, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPX|E Chain E, Polysulfide Reductase With Bound Quinone (uq1)
pdb|2VPY|A Chain A, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPY|E Chain E, Polysulfide Reductase With Bound Quinone Inhibitor,
Pentachlorophenol (Pcp)
pdb|2VPZ|A Chain A, Polysulfide Reductase Native Structure
pdb|2VPZ|E Chain E, Polysulfide Reductase Native Structure
Length = 765
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 330 FIVPKTRAHEWLFSSEEGQWLV--------VESSKAARLIMVLLDTSHASASMD-EIQKD 380
FI +T AHE LF ++ G W+ +E + I L+T S +D E K
Sbjct: 501 FIQLRTPAHEPLFDTKPGWWIARELGLRLGLEQYFPWKTIEEYLETRLQSLGLDLETMKG 560
Query: 381 LSPLVKQLAPGKDD--QGAQIPFMMAGDGI-----KHRNVVHQATSSLTGP 424
+ LV++ P +D + ++PF A I + + HQ T P
Sbjct: 561 MGTLVQRGKPWLEDWEKEGRLPFGTASGKIELYCQRFKEAGHQPLPVFTPP 611
>pdb|1CBV|H Chain H, An Autoantibody To Single-Stranded Dna: Comparison Of The
Three-Dimensional Structures Of The Unliganded Fab And A
Deoxynucleotide-Fab Complex
pdb|1NBV|H Chain H, An Autoantibody To Single-Stranded Dna: Comparison Of The
Three-Dimensional Structures Of The Unliganded Fab And A
Deoxynucleotide-Fab Complex
Length = 219
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNS 80
W+A W Q L+++ A T+ P L PGCG++
Sbjct: 107 WFAYWGQ--GTLVTVSAAKTTPPSVYPLAPGCGDT 139
>pdb|2PI2|A Chain A, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2PI2|B Chain B, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2PI2|C Chain C, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2PI2|D Chain D, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2Z6K|A Chain A, Crystal Structure Of Full-Length Human Rpa1432 HETERODIMER
pdb|2Z6K|B Chain B, Crystal Structure Of Full-Length Human Rpa1432 HETERODIMER
Length = 270
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 19/148 (12%)
Query: 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130
Q +VP + LS L D F I NV+ S+V I ++R + +++ +++ DMT+ +
Sbjct: 44 QHIVPCTISQLLSATLVDEVFR-IGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPM 102
Query: 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE-----SHV 185
+ + D D + ++ PE K+ S + KS F + L + +H+
Sbjct: 103 DVRQWVDTD-DTSSENTVVPPETYVKVAGHLRSFQNK--KSLVAFKIMPLEDMNEFTTHI 159
Query: 186 LGLLFPKFRFGWKMSVHAIPQKSSSEPS 213
L ++ + H + K++S+PS
Sbjct: 160 LEVI----------NAHMVLSKANSQPS 177
>pdb|4AV2|A Chain A, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|B Chain B, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|C Chain C, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|D Chain D, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|E Chain E, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|F Chain F, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|G Chain G, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|H Chain H, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|I Chain I, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|J Chain J, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|K Chain K, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis.
pdb|4AV2|L Chain L, Single Particle Electron Microscopy Of Pilq Dodecameric
Complexes From Neisseria Meningitidis
Length = 745
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 658 SGMTCPAADFVEGSFLLTVKDALSEQGLFIV----NLVSRSQATKDMVISRMKMVFNHLF 713
SGM A+D V G L++KD +Q L +V NL R Q + R +++
Sbjct: 344 SGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKA 403
Query: 714 CLQLEEDV 721
LQ E+D+
Sbjct: 404 FLQAEKDI 411
>pdb|4AR0|A Chain A, N0 Domain Of Neisseria Meningitidis Pilus Assembly Protein
Pilq
Length = 128
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 658 SGMTCPAADFVEGSFLLTVKDALSEQGLFIV----NLVSRSQATKDMVISRMKMVFNHLF 713
SGM A+D V G L++KD +Q L +V NL R Q + R +++
Sbjct: 54 SGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKA 113
Query: 714 CLQLEEDV 721
LQ E+D+
Sbjct: 114 FLQAEKDI 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,885,177
Number of Sequences: 62578
Number of extensions: 822484
Number of successful extensions: 1875
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1868
Number of HSP's gapped (non-prelim): 21
length of query: 772
length of database: 14,973,337
effective HSP length: 106
effective length of query: 666
effective length of database: 8,340,069
effective search space: 5554485954
effective search space used: 5554485954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)