Query 004133
Match_columns 772
No_of_seqs 636 out of 3947
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 18:08:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2352 Predicted spermine/spe 100.0 2.8E-67 6.2E-72 572.2 24.0 451 18-733 3-459 (482)
2 PRK04457 spermidine synthase; 100.0 1.7E-29 3.7E-34 266.9 27.4 213 449-753 26-241 (262)
3 PLN02823 spermine synthase 99.9 2.9E-23 6.4E-28 225.3 24.5 182 517-743 87-282 (336)
4 COG0421 SpeE Spermidine syntha 99.9 5.2E-22 1.1E-26 210.0 24.4 188 517-752 60-260 (282)
5 PF01564 Spermine_synth: Sperm 99.9 2.3E-22 5.1E-27 210.5 18.2 170 516-731 59-237 (246)
6 PRK00811 spermidine synthase; 99.9 8.6E-21 1.9E-25 203.0 22.7 168 516-730 59-238 (283)
7 PLN02366 spermidine synthase 99.9 3E-20 6.5E-25 200.0 23.9 169 516-730 74-254 (308)
8 PRK01581 speE spermidine synth 99.8 4.9E-19 1.1E-23 191.2 20.5 170 517-732 134-316 (374)
9 KOG1271 Methyltransferases [Ge 99.8 4E-18 8.6E-23 163.8 12.7 167 24-195 14-195 (227)
10 COG2226 UbiE Methylase involve 99.8 7.9E-18 1.7E-22 173.5 15.8 124 50-184 36-161 (238)
11 TIGR00417 speE spermidine synt 99.8 4E-17 8.7E-22 173.8 19.7 168 516-730 55-233 (270)
12 PRK00536 speE spermidine synth 99.7 1E-16 2.2E-21 167.9 17.0 153 516-731 55-217 (262)
13 PF01209 Ubie_methyltran: ubiE 99.7 1.2E-16 2.5E-21 166.2 11.8 118 56-184 38-158 (233)
14 PLN02336 phosphoethanolamine N 99.7 6.8E-15 1.5E-19 169.2 26.7 114 56-180 28-143 (475)
15 TIGR03840 TMPT_Se_Te thiopurin 99.7 6E-16 1.3E-20 158.8 13.3 141 29-182 1-155 (213)
16 PRK03612 spermidine synthase; 99.7 2.4E-15 5.3E-20 173.9 18.5 167 517-730 281-460 (521)
17 PRK13255 thiopurine S-methyltr 99.6 3.2E-15 7E-20 153.9 16.6 142 27-180 2-156 (218)
18 PRK13256 thiopurine S-methyltr 99.6 4.3E-15 9.2E-20 152.7 17.2 165 26-203 7-196 (226)
19 PF08241 Methyltransf_11: Meth 99.6 1.2E-15 2.6E-20 134.6 9.9 95 73-177 1-95 (95)
20 PLN02233 ubiquinone biosynthes 99.6 6E-15 1.3E-19 156.4 16.1 120 54-184 62-187 (261)
21 PRK11207 tellurite resistance 99.6 1.3E-14 2.9E-19 147.3 13.6 114 56-180 21-135 (197)
22 PLN02244 tocopherol O-methyltr 99.6 2.1E-14 4.5E-19 158.0 15.9 107 67-182 117-226 (340)
23 KOG1540 Ubiquinone biosynthesi 99.6 1.4E-14 3.1E-19 146.6 13.3 130 67-206 99-239 (296)
24 PF03848 TehB: Tellurite resis 99.6 3.5E-14 7.5E-19 142.1 15.5 114 57-181 22-135 (192)
25 PF05724 TPMT: Thiopurine S-me 99.6 7.5E-15 1.6E-19 150.9 10.2 140 27-180 2-156 (218)
26 PF12847 Methyltransf_18: Meth 99.6 2.1E-14 4.6E-19 131.5 11.8 106 68-179 1-111 (112)
27 TIGR00477 tehB tellurite resis 99.5 5.2E-14 1.1E-18 142.8 13.6 114 56-180 21-134 (195)
28 PF05401 NodS: Nodulation prot 99.5 4.1E-14 8.9E-19 140.1 10.9 144 26-182 4-149 (201)
29 COG2227 UbiG 2-polyprenyl-3-me 99.5 2.4E-14 5.2E-19 145.4 7.9 106 68-182 59-164 (243)
30 TIGR02752 MenG_heptapren 2-hep 99.5 2.7E-13 5.9E-18 140.9 15.8 126 48-184 28-156 (231)
31 PF13649 Methyltransf_25: Meth 99.5 4.8E-14 1E-18 127.3 7.9 96 72-173 1-101 (101)
32 PTZ00098 phosphoethanolamine N 99.5 2.6E-13 5.7E-18 144.0 14.5 109 67-183 51-160 (263)
33 PRK10258 biotin biosynthesis p 99.5 3E-13 6.5E-18 142.5 14.0 115 55-185 32-146 (251)
34 PLN02396 hexaprenyldihydroxybe 99.5 1.4E-13 3.1E-18 149.3 11.8 106 68-182 131-238 (322)
35 COG4262 Predicted spermidine s 99.5 3E-13 6.6E-18 142.4 13.3 155 541-732 288-454 (508)
36 PF13847 Methyltransf_31: Meth 99.5 3.7E-13 8.1E-18 130.8 12.2 107 67-181 2-112 (152)
37 PRK11088 rrmA 23S rRNA methylt 99.5 4.2E-13 9.1E-18 143.2 13.4 147 18-186 38-188 (272)
38 PRK11036 putative S-adenosyl-L 99.4 5.6E-13 1.2E-17 140.9 12.8 109 68-184 44-154 (255)
39 PRK12335 tellurite resistance 99.4 6.1E-13 1.3E-17 143.1 13.3 104 68-179 120-223 (287)
40 PRK15068 tRNA mo(5)U34 methylt 99.4 8.1E-13 1.8E-17 144.1 13.9 113 56-180 113-227 (322)
41 PLN02336 phosphoethanolamine N 99.4 1.8E-12 3.9E-17 149.2 15.6 108 67-182 265-372 (475)
42 TIGR03587 Pse_Me-ase pseudamin 99.4 1.2E-12 2.5E-17 133.7 12.3 102 67-181 42-144 (204)
43 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.9E-12 4E-17 136.3 13.5 104 68-179 56-164 (247)
44 PF13489 Methyltransf_23: Meth 99.4 2E-12 4.4E-17 125.7 12.5 111 53-183 9-119 (161)
45 PRK14103 trans-aconitate 2-met 99.4 2.6E-12 5.7E-17 135.8 14.2 99 67-180 28-127 (255)
46 PRK00107 gidB 16S rRNA methylt 99.4 6E-12 1.3E-16 126.6 15.6 139 68-223 45-186 (187)
47 TIGR00452 methyltransferase, p 99.4 2.8E-12 6E-17 138.7 14.1 106 67-181 120-227 (314)
48 PRK01683 trans-aconitate 2-met 99.4 5E-12 1.1E-16 133.7 15.2 100 67-179 30-130 (258)
49 PRK11783 rlmL 23S rRNA m(2)G24 99.4 1.1E-09 2.3E-14 131.5 36.6 117 543-692 539-658 (702)
50 KOG1562 Spermidine synthase [A 99.4 1E-12 2.3E-17 135.7 8.7 148 517-711 105-259 (337)
51 KOG2361 Predicted methyltransf 99.4 3.7E-12 8E-17 128.6 12.3 150 27-186 35-190 (264)
52 PRK05785 hypothetical protein; 99.4 3.8E-12 8.3E-17 132.1 12.7 99 68-183 51-149 (226)
53 KOG4300 Predicted methyltransf 99.4 2.9E-12 6.2E-17 126.1 10.9 109 67-182 75-185 (252)
54 COG2230 Cfa Cyclopropane fatty 99.4 2.8E-12 6E-17 134.9 11.3 117 58-184 62-181 (283)
55 TIGR00740 methyltransferase, p 99.4 6.5E-12 1.4E-16 131.5 13.8 105 68-180 53-162 (239)
56 PLN02490 MPBQ/MSBQ methyltrans 99.4 3.6E-12 7.9E-17 138.9 12.0 104 67-180 112-216 (340)
57 TIGR02072 BioC biotin biosynth 99.3 7.2E-12 1.6E-16 130.0 13.5 107 68-185 34-141 (240)
58 PF02353 CMAS: Mycolic acid cy 99.3 7.5E-12 1.6E-16 133.1 13.8 118 56-183 50-170 (273)
59 KOG1270 Methyltransferases [Co 99.3 1.8E-12 3.9E-17 132.5 7.5 101 69-182 90-198 (282)
60 PRK08317 hypothetical protein; 99.3 2E-11 4.3E-16 126.6 14.8 116 54-180 8-125 (241)
61 TIGR00138 gidB 16S rRNA methyl 99.3 2E-11 4.3E-16 122.3 14.1 100 68-180 42-143 (181)
62 PRK11873 arsM arsenite S-adeno 99.3 1.2E-11 2.6E-16 132.0 13.2 107 67-181 76-185 (272)
63 PRK06922 hypothetical protein; 99.3 1.3E-11 2.7E-16 142.3 13.2 113 68-180 418-538 (677)
64 PRK00216 ubiE ubiquinone/menaq 99.3 3.2E-11 6.9E-16 125.3 15.0 108 67-182 50-161 (239)
65 smart00138 MeTrc Methyltransfe 99.3 1.5E-11 3.3E-16 130.5 12.3 106 68-179 99-242 (264)
66 TIGR00537 hemK_rel_arch HemK-r 99.3 4.7E-11 1E-15 119.4 14.7 113 67-183 18-144 (179)
67 PF08242 Methyltransf_12: Meth 99.3 8.7E-13 1.9E-17 118.4 1.9 96 73-175 1-99 (99)
68 TIGR02469 CbiT precorrin-6Y C5 99.3 6.4E-11 1.4E-15 110.0 14.1 115 53-180 7-123 (124)
69 PRK01544 bifunctional N5-gluta 99.3 2.8E-09 6E-14 123.1 29.7 131 542-707 347-477 (506)
70 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 1.1E-10 2.3E-15 120.0 15.8 107 67-182 38-146 (223)
71 PRK00121 trmB tRNA (guanine-N( 99.2 2.2E-11 4.8E-16 124.3 10.1 132 68-200 40-177 (202)
72 PF01596 Methyltransf_3: O-met 99.2 3.1E-11 6.6E-16 123.0 10.7 107 541-689 44-154 (205)
73 PRK11705 cyclopropane fatty ac 99.2 6.8E-11 1.5E-15 131.9 14.0 105 67-183 166-271 (383)
74 PRK08287 cobalt-precorrin-6Y C 99.2 3.1E-10 6.6E-15 114.3 17.4 116 51-182 17-134 (187)
75 PF12847 Methyltransf_18: Meth 99.2 4E-11 8.7E-16 109.7 9.9 109 543-690 2-111 (112)
76 PRK06202 hypothetical protein; 99.2 9.5E-11 2.1E-15 122.1 13.6 107 67-183 59-170 (232)
77 smart00828 PKS_MT Methyltransf 99.2 5.8E-11 1.3E-15 122.8 11.8 102 71-181 2-106 (224)
78 PF05175 MTS: Methyltransferas 99.2 8E-11 1.7E-15 116.8 11.9 123 54-183 20-144 (170)
79 COG4106 Tam Trans-aconitate me 99.2 6.1E-11 1.3E-15 117.8 10.6 100 67-179 29-129 (257)
80 COG4122 Predicted O-methyltran 99.2 1.1E-10 2.3E-15 119.1 12.6 127 541-713 58-196 (219)
81 PLN03075 nicotianamine synthas 99.2 3.5E-10 7.5E-15 120.5 16.2 129 44-179 99-233 (296)
82 PRK13944 protein-L-isoaspartat 99.2 2.7E-10 5.9E-15 116.5 14.6 111 52-179 59-173 (205)
83 PRK07580 Mg-protoporphyrin IX 99.2 1.7E-10 3.7E-15 119.6 13.1 136 28-174 22-161 (230)
84 PF08003 Methyltransf_9: Prote 99.2 1.6E-10 3.4E-15 121.7 12.8 125 45-183 97-223 (315)
85 PRK14967 putative methyltransf 99.2 2.2E-10 4.7E-15 118.7 13.6 112 67-180 35-160 (223)
86 PRK00377 cbiT cobalt-precorrin 99.2 6.7E-10 1.5E-14 113.0 15.8 118 52-182 27-148 (198)
87 TIGR02021 BchM-ChlM magnesium 99.2 2.4E-10 5.2E-15 118.0 12.7 137 28-178 14-157 (219)
88 PLN02585 magnesium protoporphy 99.2 3.1E-10 6.8E-15 123.0 13.9 114 52-176 128-247 (315)
89 PRK15001 SAM-dependent 23S rib 99.1 4E-10 8.6E-15 124.7 14.3 120 54-180 217-341 (378)
90 PRK04266 fibrillarin; Provisio 99.1 5.1E-10 1.1E-14 116.0 13.9 123 46-178 50-175 (226)
91 TIGR03438 probable methyltrans 99.1 3.5E-10 7.7E-15 122.5 13.2 106 68-179 63-177 (301)
92 TIGR01177 conserved hypothetic 99.1 7.2E-10 1.6E-14 121.6 15.8 128 52-184 169-299 (329)
93 PRK11188 rrmJ 23S rRNA methylt 99.1 1E-09 2.2E-14 112.5 15.7 109 67-185 50-171 (209)
94 PF13659 Methyltransf_26: Meth 99.1 2E-10 4.4E-15 106.0 9.4 112 69-180 1-116 (117)
95 PRK05134 bifunctional 3-demeth 99.1 6.6E-10 1.4E-14 115.7 13.5 107 67-181 47-153 (233)
96 PRK07402 precorrin-6B methylas 99.1 2.6E-09 5.7E-14 108.4 17.5 120 51-185 26-148 (196)
97 PRK13942 protein-L-isoaspartat 99.1 7.4E-10 1.6E-14 113.9 13.2 112 51-179 62-176 (212)
98 PRK09489 rsmC 16S ribosomal RN 99.1 9.5E-10 2.1E-14 120.8 14.7 148 24-181 152-305 (342)
99 TIGR00080 pimt protein-L-isoas 99.1 8.1E-10 1.7E-14 113.8 13.3 111 52-179 64-177 (215)
100 TIGR00406 prmA ribosomal prote 99.1 8.6E-10 1.9E-14 118.7 13.9 105 67-184 158-264 (288)
101 PRK00312 pcm protein-L-isoaspa 99.1 1.5E-09 3.2E-14 111.5 14.6 138 25-180 38-176 (212)
102 PF07021 MetW: Methionine bios 99.1 2.9E-10 6.2E-15 112.8 8.7 102 56-178 6-108 (193)
103 TIGR00091 tRNA (guanine-N(7)-) 99.1 4.5E-10 9.8E-15 113.9 10.4 117 68-184 16-137 (194)
104 COG4123 Predicted O-methyltran 99.1 3.4E-09 7.4E-14 109.8 16.9 157 541-733 43-215 (248)
105 KOG1975 mRNA cap methyltransfe 99.1 3.6E-10 7.7E-15 118.3 9.1 132 67-201 116-259 (389)
106 PLN02476 O-methyltransferase 99.1 1.1E-09 2.3E-14 116.1 12.4 107 541-689 117-227 (278)
107 TIGR01983 UbiG ubiquinone bios 99.1 1.1E-09 2.3E-14 113.2 12.0 105 68-181 45-151 (224)
108 PF03291 Pox_MCEL: mRNA cappin 99.1 9E-10 2E-14 120.1 11.8 121 68-191 62-198 (331)
109 TIGR03533 L3_gln_methyl protei 99.0 2.1E-09 4.5E-14 115.5 14.3 111 68-180 121-252 (284)
110 TIGR03534 RF_mod_PrmC protein- 99.0 1.6E-09 3.5E-14 113.7 13.2 110 68-179 87-217 (251)
111 TIGR02716 C20_methyl_CrtF C-20 99.0 1.7E-09 3.7E-14 117.5 13.3 106 67-181 148-256 (306)
112 PRK14968 putative methyltransf 99.0 3.8E-09 8.3E-14 105.7 14.9 111 67-180 22-149 (188)
113 PRK14966 unknown domain/N5-glu 99.0 3.7E-09 8E-14 117.3 15.8 124 68-192 251-395 (423)
114 PLN03075 nicotianamine synthas 99.0 2.6E-09 5.7E-14 113.8 13.8 149 542-732 123-277 (296)
115 PRK09328 N5-glutamine S-adenos 99.0 1.6E-09 3.5E-14 115.5 12.2 111 67-179 107-238 (275)
116 COG2264 PrmA Ribosomal protein 99.0 2.3E-09 5E-14 113.9 12.5 124 67-203 161-287 (300)
117 PRK11805 N5-glutamine S-adenos 99.0 3.5E-09 7.6E-14 114.8 14.3 108 70-179 135-263 (307)
118 PTZ00146 fibrillarin; Provisio 99.0 3.1E-09 6.7E-14 112.8 13.4 123 46-178 110-236 (293)
119 PRK00517 prmA ribosomal protei 99.0 2.9E-09 6.2E-14 112.4 13.1 100 67-183 118-217 (250)
120 PLN02781 Probable caffeoyl-CoA 99.0 2.2E-09 4.9E-14 112.0 12.1 106 541-688 67-176 (234)
121 PLN02589 caffeoyl-CoA O-methyl 99.0 2.3E-09 4.9E-14 112.3 12.0 108 541-689 78-189 (247)
122 PF06325 PrmA: Ribosomal prote 99.0 1.9E-09 4.2E-14 115.4 11.4 123 67-203 160-282 (295)
123 PF13659 Methyltransf_26: Meth 99.0 3.6E-09 7.9E-14 97.6 11.8 114 544-691 2-116 (117)
124 PRK14121 tRNA (guanine-N(7)-)- 99.0 3.1E-09 6.6E-14 117.3 13.1 118 67-185 121-241 (390)
125 TIGR02081 metW methionine bios 99.0 2.8E-09 6.1E-14 108.0 11.7 91 68-171 13-104 (194)
126 KOG1541 Predicted protein carb 99.0 3.5E-09 7.7E-14 105.6 11.8 122 55-183 38-164 (270)
127 cd02440 AdoMet_MTases S-adenos 99.0 4E-09 8.6E-14 92.8 10.8 102 71-178 1-103 (107)
128 TIGR00536 hemK_fam HemK family 99.0 8.1E-09 1.8E-13 111.0 14.6 120 70-191 116-257 (284)
129 PLN02232 ubiquinone biosynthes 99.0 1.9E-09 4.1E-14 106.0 8.6 82 95-184 1-86 (160)
130 PRK00107 gidB 16S rRNA methylt 98.9 1.2E-08 2.6E-13 102.7 14.1 147 518-719 28-174 (187)
131 TIGR02469 CbiT precorrin-6Y C5 98.9 8.5E-09 1.8E-13 95.7 12.1 104 543-691 20-123 (124)
132 COG4123 Predicted O-methyltran 98.9 8.3E-09 1.8E-13 107.0 12.2 122 57-181 36-172 (248)
133 COG2813 RsmC 16S RNA G1207 met 98.9 1.5E-08 3.1E-13 107.3 13.8 134 53-194 146-281 (300)
134 TIGR00438 rrmJ cell division p 98.9 1.5E-08 3.3E-13 102.1 13.4 107 67-183 31-150 (188)
135 PF05175 MTS: Methyltransferas 98.9 9.9E-09 2.2E-13 101.8 10.9 131 542-716 31-161 (170)
136 PHA03411 putative methyltransf 98.9 3.5E-08 7.7E-13 103.8 14.8 147 25-183 27-187 (279)
137 KOG3010 Methyltransferase [Gen 98.9 4.7E-09 1E-13 106.5 7.6 103 70-182 35-140 (261)
138 TIGR00091 tRNA (guanine-N(7)-) 98.9 6.7E-08 1.5E-12 98.0 16.1 134 542-709 16-149 (194)
139 TIGR03704 PrmC_rel_meth putati 98.9 4.6E-08 1E-12 103.2 15.3 110 69-180 87-217 (251)
140 TIGR00138 gidB 16S rRNA methyl 98.8 4E-08 8.7E-13 98.6 13.8 97 543-690 43-142 (181)
141 COG2242 CobL Precorrin-6B meth 98.8 1.2E-07 2.6E-12 93.8 16.6 121 51-186 20-142 (187)
142 PRK10901 16S rRNA methyltransf 98.8 3.1E-08 6.6E-13 112.6 14.0 122 57-181 236-374 (427)
143 smart00650 rADc Ribosomal RNA 98.8 2E-08 4.4E-13 99.4 11.0 77 67-146 12-88 (169)
144 PRK00121 trmB tRNA (guanine-N( 98.8 8E-08 1.7E-12 98.1 15.4 131 542-707 40-171 (202)
145 PRK00811 spermidine synthase; 98.8 2.3E-08 5E-13 107.3 12.0 109 68-179 76-191 (283)
146 PRK11783 rlmL 23S rRNA m(2)G24 98.8 3.8E-08 8.2E-13 118.2 14.8 152 46-205 522-681 (702)
147 PRK13943 protein-L-isoaspartat 98.8 4.6E-08 9.9E-13 106.4 13.2 112 51-179 66-180 (322)
148 PF01135 PCMT: Protein-L-isoas 98.8 2.7E-08 5.8E-13 101.8 10.8 113 50-179 57-172 (209)
149 PRK04457 spermidine synthase; 98.8 5.5E-08 1.2E-12 103.3 12.7 114 68-184 66-182 (262)
150 TIGR00563 rsmB ribosomal RNA s 98.8 5.6E-08 1.2E-12 110.4 13.6 124 55-182 228-371 (426)
151 COG2263 Predicted RNA methylas 98.8 8.9E-08 1.9E-12 94.3 12.9 103 44-150 21-123 (198)
152 COG2518 Pcm Protein-L-isoaspar 98.8 7.8E-08 1.7E-12 97.0 12.4 112 51-180 58-170 (209)
153 PRK14903 16S rRNA methyltransf 98.7 1E-07 2.2E-12 108.3 14.2 124 56-182 228-369 (431)
154 TIGR00446 nop2p NOL1/NOP2/sun 98.7 9.9E-08 2.2E-12 101.5 13.3 115 67-182 70-202 (264)
155 PRK15128 23S rRNA m(5)C1962 me 98.7 1.3E-07 2.7E-12 106.0 14.3 130 46-181 204-341 (396)
156 COG2890 HemK Methylase of poly 98.7 1.4E-07 3.1E-12 100.9 14.2 121 71-194 113-254 (280)
157 PRK08287 cobalt-precorrin-6Y C 98.7 1.2E-07 2.7E-12 95.4 12.8 117 541-707 30-146 (187)
158 PRK00377 cbiT cobalt-precorrin 98.7 2.9E-07 6.3E-12 93.7 15.3 121 541-708 39-161 (198)
159 COG4976 Predicted methyltransf 98.7 5.2E-09 1.1E-13 105.0 2.4 101 67-179 124-225 (287)
160 PRK14904 16S rRNA methyltransf 98.7 8.3E-08 1.8E-12 109.7 12.3 114 67-182 249-380 (445)
161 COG2519 GCD14 tRNA(1-methylade 98.7 1.3E-07 2.7E-12 97.5 12.1 120 541-713 93-217 (256)
162 PHA03412 putative methyltransf 98.7 2.9E-07 6.2E-12 94.9 13.6 101 68-174 49-158 (241)
163 COG1041 Predicted DNA modifica 98.7 3.8E-07 8.2E-12 98.3 15.2 125 51-180 183-311 (347)
164 PF13847 Methyltransf_31: Meth 98.7 7.9E-08 1.7E-12 93.4 9.1 111 542-698 3-118 (152)
165 PRK14901 16S rRNA methyltransf 98.7 2.2E-07 4.7E-12 105.9 13.9 124 56-182 243-387 (434)
166 PRK14902 16S rRNA methyltransf 98.7 2.3E-07 5E-12 106.0 14.1 122 56-181 241-381 (444)
167 TIGR00446 nop2p NOL1/NOP2/sun 98.7 5.3E-07 1.2E-11 95.9 15.8 137 542-713 71-222 (264)
168 PRK07402 precorrin-6B methylas 98.6 2.9E-07 6.2E-12 93.5 12.9 105 542-692 40-144 (196)
169 PRK14103 trans-aconitate 2-met 98.6 2.5E-07 5.5E-12 97.8 12.4 101 541-692 28-128 (255)
170 TIGR03533 L3_gln_methyl protei 98.6 6.8E-07 1.5E-11 96.1 15.6 116 542-691 121-252 (284)
171 COG2242 CobL Precorrin-6B meth 98.6 9.2E-07 2E-11 87.5 15.0 125 541-717 33-161 (187)
172 PRK09328 N5-glutamine S-adenos 98.6 6E-07 1.3E-11 95.8 14.9 151 541-728 107-274 (275)
173 TIGR02752 MenG_heptapren 2-hep 98.6 2E-06 4.4E-11 89.3 18.3 105 541-688 44-149 (231)
174 PRK13168 rumA 23S rRNA m(5)U19 98.6 7.2E-07 1.6E-11 101.9 16.2 135 55-206 287-426 (443)
175 PF00891 Methyltransf_2: O-met 98.6 2.5E-07 5.4E-12 97.0 11.4 100 67-181 99-201 (241)
176 PF05891 Methyltransf_PK: AdoM 98.6 3.7E-07 8E-12 92.5 11.9 148 68-222 55-218 (218)
177 TIGR00417 speE spermidine synt 98.6 3.3E-07 7.1E-12 97.9 12.1 109 68-179 72-186 (270)
178 PRK14903 16S rRNA methyltransf 98.6 9.3E-07 2E-11 100.5 16.0 138 542-716 237-392 (431)
179 PRK11805 N5-glutamine S-adenos 98.6 8.3E-07 1.8E-11 96.4 14.9 147 544-730 135-297 (307)
180 PLN02366 spermidine synthase 98.6 4.9E-07 1.1E-11 98.0 12.9 109 67-178 90-205 (308)
181 PRK01683 trans-aconitate 2-met 98.6 5.5E-07 1.2E-11 95.3 13.0 103 541-692 30-132 (258)
182 PLN02781 Probable caffeoyl-CoA 98.6 4.2E-07 9E-12 95.0 11.9 112 54-178 57-177 (234)
183 PRK01581 speE spermidine synth 98.6 4.5E-07 9.7E-12 99.0 12.2 111 68-180 150-269 (374)
184 PRK15001 SAM-dependent 23S rib 98.6 1.3E-06 2.7E-11 97.1 16.0 128 544-715 230-360 (378)
185 TIGR00080 pimt protein-L-isoas 98.6 4.1E-07 8.8E-12 93.8 11.4 102 541-691 76-178 (215)
186 PRK11036 putative S-adenosyl-L 98.6 5.8E-07 1.2E-11 95.1 12.7 111 541-695 43-154 (255)
187 PRK03522 rumB 23S rRNA methylu 98.6 1.4E-06 2.9E-11 95.3 15.8 74 68-142 173-247 (315)
188 COG2227 UbiG 2-polyprenyl-3-me 98.5 4.5E-07 9.8E-12 92.8 11.1 110 542-697 59-168 (243)
189 COG2521 Predicted archaeal met 98.5 2.8E-07 6E-12 93.0 9.2 132 541-712 133-273 (287)
190 TIGR03534 RF_mod_PrmC protein- 98.5 7.6E-07 1.6E-11 93.5 12.9 117 542-692 87-219 (251)
191 COG2518 Pcm Protein-L-isoaspar 98.5 2.4E-07 5.3E-12 93.4 8.6 117 514-691 54-170 (209)
192 KOG2899 Predicted methyltransf 98.5 3.4E-07 7.4E-12 92.9 9.6 107 68-179 58-209 (288)
193 PRK13942 protein-L-isoaspartat 98.5 5.8E-07 1.3E-11 92.5 11.6 100 542-690 76-176 (212)
194 PLN02396 hexaprenyldihydroxybe 98.5 4.5E-07 9.9E-12 98.8 11.3 108 542-694 131-239 (322)
195 PRK14121 tRNA (guanine-N(7)-)- 98.5 1.6E-06 3.5E-11 96.0 15.5 131 541-708 121-251 (390)
196 PLN02233 ubiquinone biosynthes 98.5 1.2E-06 2.5E-11 93.2 14.0 111 541-694 72-186 (261)
197 PRK15451 tRNA cmo(5)U34 methyl 98.5 6E-07 1.3E-11 94.6 11.6 102 541-689 55-163 (247)
198 KOG1499 Protein arginine N-met 98.5 4.7E-07 1E-11 97.1 10.8 99 68-176 60-164 (346)
199 TIGR00536 hemK_fam HemK family 98.5 1.3E-06 2.7E-11 94.1 14.2 148 544-728 116-281 (284)
200 PF01739 CheR: CheR methyltran 98.5 5.1E-07 1.1E-11 91.5 10.3 106 68-179 31-175 (196)
201 KOG2940 Predicted methyltransf 98.5 7E-08 1.5E-12 96.7 3.5 111 68-187 72-182 (325)
202 PRK04266 fibrillarin; Provisio 98.5 2.6E-06 5.7E-11 88.4 15.3 143 541-727 71-223 (226)
203 PRK14902 16S rRNA methyltransf 98.5 1.6E-06 3.5E-11 99.1 15.1 133 542-711 250-400 (444)
204 PRK10909 rsmD 16S rRNA m(2)G96 98.5 1.4E-06 3.1E-11 88.5 12.9 107 68-182 53-162 (199)
205 PRK13944 protein-L-isoaspartat 98.5 1.2E-06 2.6E-11 89.7 12.4 101 542-691 72-174 (205)
206 PRK10611 chemotaxis methyltran 98.5 1.1E-06 2.4E-11 94.0 12.3 142 28-179 79-262 (287)
207 TIGR00740 methyltransferase, p 98.5 3.4E-06 7.3E-11 88.4 15.8 105 542-689 53-160 (239)
208 PF02390 Methyltransf_4: Putat 98.5 5.5E-07 1.2E-11 91.4 9.4 117 69-185 18-139 (195)
209 PRK14966 unknown domain/N5-glu 98.5 4.8E-06 1E-10 92.8 17.5 151 543-729 252-418 (423)
210 PRK01544 bifunctional N5-gluta 98.5 1.8E-06 3.8E-11 100.1 14.6 151 542-731 138-308 (506)
211 PLN02672 methionine S-methyltr 98.5 7.5E-07 1.6E-11 109.5 12.0 123 69-192 119-293 (1082)
212 PRK11188 rrmJ 23S rRNA methylt 98.5 2.8E-06 6E-11 87.3 14.5 144 542-729 51-206 (209)
213 PF08241 Methyltransf_11: Meth 98.5 4.6E-07 9.9E-12 79.5 7.6 94 547-688 1-95 (95)
214 COG3963 Phospholipid N-methylt 98.5 4.3E-06 9.2E-11 80.6 14.3 118 52-181 35-158 (194)
215 TIGR00537 hemK_rel_arch HemK-r 98.5 2.5E-06 5.4E-11 85.3 13.5 147 542-728 19-176 (179)
216 TIGR02072 BioC biotin biosynth 98.4 1.6E-06 3.4E-11 90.0 12.3 106 541-693 33-138 (240)
217 TIGR03704 PrmC_rel_meth putati 98.4 2.4E-06 5.1E-11 90.3 13.7 127 543-707 87-230 (251)
218 COG2519 GCD14 tRNA(1-methylade 98.4 1.6E-06 3.4E-11 89.5 11.8 117 54-187 83-203 (256)
219 TIGR00563 rsmB ribosomal RNA s 98.4 2.1E-06 4.6E-11 97.6 14.3 136 542-712 238-390 (426)
220 PRK03612 spermidine synthase; 98.4 7.9E-07 1.7E-11 103.4 10.6 110 68-179 297-415 (521)
221 COG2226 UbiE Methylase involve 98.4 1.7E-06 3.8E-11 89.8 11.9 110 541-693 50-159 (238)
222 PRK10901 16S rRNA methyltransf 98.4 3.9E-06 8.5E-11 95.5 15.9 136 542-711 244-393 (427)
223 PF05219 DREV: DREV methyltran 98.4 1.2E-06 2.7E-11 90.8 10.4 95 68-179 94-188 (265)
224 PF01170 UPF0020: Putative RNA 98.4 1.9E-06 4.1E-11 86.3 11.5 116 52-171 15-143 (179)
225 PRK14904 16S rRNA methyltransf 98.4 3.3E-06 7.1E-11 96.6 14.8 131 542-711 250-398 (445)
226 PRK00274 ksgA 16S ribosomal RN 98.4 2.1E-06 4.5E-11 91.9 12.3 86 52-144 29-114 (272)
227 PRK09489 rsmC 16S ribosomal RN 98.4 5E-06 1.1E-10 91.6 15.4 141 543-730 197-337 (342)
228 TIGR00479 rumA 23S rRNA (uraci 98.4 2.5E-06 5.4E-11 97.3 13.4 126 67-204 291-420 (431)
229 COG0220 Predicted S-adenosylme 98.4 1.8E-06 4E-11 89.3 10.9 125 57-184 40-169 (227)
230 PRK15128 23S rRNA m(5)C1962 me 98.4 4.3E-06 9.2E-11 93.8 14.6 110 543-688 221-337 (396)
231 PTZ00098 phosphoethanolamine N 98.4 2.5E-06 5.3E-11 90.8 12.0 107 541-692 51-158 (263)
232 TIGR00438 rrmJ cell division p 98.4 7E-06 1.5E-10 82.8 14.7 145 541-728 31-186 (188)
233 PF13649 Methyltransf_25: Meth 98.4 1.2E-06 2.5E-11 79.0 8.0 95 546-684 1-101 (101)
234 PLN02244 tocopherol O-methyltr 98.4 2.4E-06 5.1E-11 94.3 12.0 107 541-691 117-224 (340)
235 TIGR00406 prmA ribosomal prote 98.4 4.8E-06 1E-10 89.8 14.1 118 542-710 159-277 (288)
236 PF10294 Methyltransf_16: Puta 98.4 2.6E-06 5.7E-11 84.8 11.1 105 67-179 44-156 (173)
237 PRK14896 ksgA 16S ribosomal RN 98.4 2.3E-06 4.9E-11 90.9 11.0 87 52-146 16-102 (258)
238 PF08242 Methyltransf_12: Meth 98.4 5.7E-08 1.2E-12 87.1 -1.1 99 547-686 1-99 (99)
239 PF01209 Ubie_methyltran: ubiE 98.3 7E-07 1.5E-11 93.1 6.9 106 541-690 46-153 (233)
240 TIGR02085 meth_trns_rumB 23S r 98.3 7.9E-06 1.7E-10 91.3 15.3 125 68-206 233-358 (374)
241 PF02353 CMAS: Mycolic acid cy 98.3 2.4E-06 5.3E-11 91.1 10.2 109 541-696 61-172 (273)
242 PTZ00146 fibrillarin; Provisio 98.3 1.2E-05 2.5E-10 85.9 15.1 140 542-729 132-286 (293)
243 PRK11207 tellurite resistance 98.3 2.4E-06 5.2E-11 86.9 9.7 103 542-688 30-132 (197)
244 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 1.7E-05 3.7E-10 81.4 16.1 103 542-689 39-142 (223)
245 PF08704 GCD14: tRNA methyltra 98.3 7.2E-06 1.6E-10 85.9 13.3 124 541-715 39-170 (247)
246 PRK04148 hypothetical protein; 98.3 8.5E-06 1.9E-10 77.0 12.2 110 52-184 3-114 (134)
247 PRK00312 pcm protein-L-isoaspa 98.3 5.2E-06 1.1E-10 85.3 11.6 100 541-691 77-176 (212)
248 PF06080 DUF938: Protein of un 98.3 4.1E-06 8.8E-11 84.6 10.4 117 52-178 13-140 (204)
249 PF10672 Methyltrans_SAM: S-ad 98.3 3.6E-06 7.8E-11 89.9 10.5 131 45-182 106-241 (286)
250 KOG3420 Predicted RNA methylas 98.3 3E-06 6.5E-11 79.6 8.5 106 43-149 22-128 (185)
251 COG2890 HemK Methylase of poly 98.3 9E-06 2E-10 87.2 13.4 146 545-730 113-277 (280)
252 PRK14901 16S rRNA methyltransf 98.3 1.2E-05 2.6E-10 91.7 15.1 137 542-712 252-406 (434)
253 PRK10909 rsmD 16S rRNA m(2)G96 98.3 7.3E-06 1.6E-10 83.4 12.0 104 543-691 54-160 (199)
254 COG2230 Cfa Cyclopropane fatty 98.3 4.5E-06 9.8E-11 88.3 10.7 123 541-711 71-198 (283)
255 PRK00517 prmA ribosomal protei 98.3 1.5E-05 3.3E-10 84.1 14.8 111 541-708 118-229 (250)
256 PF08704 GCD14: tRNA methyltra 98.3 8.7E-06 1.9E-10 85.3 12.6 122 51-188 26-155 (247)
257 PF01135 PCMT: Protein-L-isoas 98.3 2.7E-06 5.8E-11 87.2 8.5 103 541-692 71-174 (209)
258 smart00828 PKS_MT Methyltransf 98.3 3.3E-06 7.1E-11 87.3 9.3 103 544-690 1-104 (224)
259 TIGR00755 ksgA dimethyladenosi 98.3 9.1E-06 2E-10 85.9 12.8 86 52-145 16-104 (253)
260 COG2813 RsmC 16S RNA G1207 met 98.2 1.6E-05 3.6E-10 84.4 14.3 129 543-716 159-287 (300)
261 COG1092 Predicted SAM-dependen 98.2 3.2E-06 6.9E-11 93.8 9.2 131 46-182 201-339 (393)
262 PF05401 NodS: Nodulation prot 98.2 1.6E-05 3.4E-10 79.6 13.1 141 541-731 42-197 (201)
263 KOG2904 Predicted methyltransf 98.2 1.3E-05 2.8E-10 83.0 12.7 128 53-180 133-286 (328)
264 KOG1663 O-methyltransferase [S 98.2 8.4E-06 1.8E-10 82.8 11.1 110 541-690 72-183 (237)
265 PLN02476 O-methyltransferase 98.2 1.3E-05 2.9E-10 85.2 13.2 102 67-178 117-227 (278)
266 PRK06922 hypothetical protein; 98.2 9.2E-06 2E-10 94.6 12.7 115 542-690 418-537 (677)
267 COG4106 Tam Trans-aconitate me 98.2 9E-06 1.9E-10 81.6 10.9 104 541-693 29-132 (257)
268 PLN02490 MPBQ/MSBQ methyltrans 98.2 9.4E-06 2E-10 89.0 12.2 101 542-688 113-213 (340)
269 PLN02823 spermine synthase 98.2 9.7E-06 2.1E-10 88.9 12.2 109 68-178 103-219 (336)
270 KOG1331 Predicted methyltransf 98.2 1.5E-06 3.2E-11 90.8 5.4 137 28-183 11-147 (293)
271 PRK00216 ubiE ubiquinone/menaq 98.2 4.6E-05 1E-09 79.0 16.6 105 542-689 51-157 (239)
272 PF01596 Methyltransf_3: O-met 98.2 5.9E-06 1.3E-10 84.4 9.6 102 68-179 45-155 (205)
273 KOG2899 Predicted methyltransf 98.2 6.9E-06 1.5E-10 83.6 9.5 127 541-689 57-208 (288)
274 PRK11873 arsM arsenite S-adeno 98.2 1E-05 2.2E-10 86.4 11.5 106 541-689 76-182 (272)
275 PRK13943 protein-L-isoaspartat 98.2 1.2E-05 2.7E-10 87.6 12.2 100 542-690 80-180 (322)
276 PF05148 Methyltransf_8: Hypot 98.2 7.7E-06 1.7E-10 82.3 9.5 128 46-203 55-184 (219)
277 TIGR03439 methyl_EasF probable 98.2 2.1E-05 4.6E-10 85.5 13.7 106 68-178 76-196 (319)
278 PRK10258 biotin biosynthesis p 98.2 1.4E-05 3E-10 84.3 11.9 102 542-693 42-143 (251)
279 PRK08317 hypothetical protein; 98.2 2E-05 4.3E-10 81.6 13.0 106 541-690 18-124 (241)
280 TIGR00095 RNA methyltransferas 98.2 9.9E-06 2.2E-10 81.9 10.3 106 68-181 49-161 (189)
281 PF02390 Methyltransf_4: Putat 98.2 1.1E-05 2.4E-10 81.9 10.7 130 545-708 20-149 (195)
282 PRK14968 putative methyltransf 98.2 2.8E-05 6E-10 77.7 13.5 115 542-692 23-150 (188)
283 COG4122 Predicted O-methyltran 98.2 1.4E-05 3E-10 82.0 11.2 117 51-180 45-167 (219)
284 cd02440 AdoMet_MTases S-adenos 98.2 2.1E-05 4.6E-10 68.8 11.1 103 545-689 1-103 (107)
285 TIGR00478 tly hemolysin TlyA f 98.1 1.5E-05 3.3E-10 82.7 11.3 90 68-178 75-170 (228)
286 KOG1270 Methyltransferases [Co 98.1 1.9E-06 4.1E-11 88.9 4.3 109 544-694 91-199 (282)
287 PF07942 N2227: N2227-like pro 98.1 1.9E-05 4.1E-10 83.5 11.7 101 68-177 56-200 (270)
288 PTZ00338 dimethyladenosine tra 98.1 1E-05 2.2E-10 87.3 10.0 88 52-146 23-112 (294)
289 KOG3191 Predicted N6-DNA-methy 98.1 2.3E-05 5E-10 76.6 11.1 131 68-201 43-190 (209)
290 PF06325 PrmA: Ribosomal prote 98.1 1.2E-05 2.5E-10 86.6 10.1 162 506-729 130-293 (295)
291 PRK14967 putative methyltransf 98.1 1.4E-05 3.1E-10 82.8 10.4 127 543-707 37-174 (223)
292 PRK11933 yebU rRNA (cytosine-C 98.1 7.6E-05 1.7E-09 85.3 16.8 134 541-711 112-263 (470)
293 TIGR00477 tehB tellurite resis 98.1 1.5E-05 3.2E-10 81.0 9.9 102 542-689 30-132 (195)
294 PRK11088 rrmA 23S rRNA methylt 98.1 1.5E-05 3.3E-10 85.1 10.2 95 542-691 85-182 (272)
295 COG2264 PrmA Ribosomal protein 98.1 4.7E-05 1E-09 81.4 13.4 164 506-728 131-297 (300)
296 KOG1500 Protein arginine N-met 98.1 1.2E-05 2.5E-10 85.0 8.6 102 67-176 176-279 (517)
297 PRK11705 cyclopropane fatty ac 98.1 4.1E-05 8.8E-10 85.8 13.5 106 541-694 166-271 (383)
298 PHA03411 putative methyltransf 98.1 4.7E-05 1E-09 80.5 13.1 110 543-692 65-185 (279)
299 PRK05134 bifunctional 3-demeth 98.1 2.9E-05 6.4E-10 80.8 11.5 109 541-694 47-155 (233)
300 PLN02672 methionine S-methyltr 98.0 4.7E-05 1E-09 94.0 14.8 120 543-696 119-284 (1082)
301 TIGR02716 C20_methyl_CrtF C-20 98.0 3E-05 6.4E-10 84.4 11.7 105 541-689 148-253 (306)
302 COG1352 CheR Methylase of chem 98.0 6E-05 1.3E-09 79.8 13.6 105 69-179 97-241 (268)
303 PF05185 PRMT5: PRMT5 arginine 98.0 2.4E-05 5.2E-10 89.0 10.8 101 69-176 187-294 (448)
304 smart00138 MeTrc Methyltransfe 98.0 1.2E-05 2.6E-10 85.6 7.9 45 541-585 98-151 (264)
305 PF12147 Methyltransf_20: Puta 98.0 5.5E-05 1.2E-09 79.6 12.5 108 68-179 135-249 (311)
306 COG0220 Predicted S-adenosylme 98.0 7.8E-05 1.7E-09 77.3 13.5 124 543-700 49-172 (227)
307 COG1092 Predicted SAM-dependen 98.0 6.6E-05 1.4E-09 83.5 13.7 119 543-693 218-339 (393)
308 KOG1540 Ubiquinone biosynthesi 98.0 8.5E-05 1.8E-09 76.5 13.3 108 539-689 97-213 (296)
309 smart00650 rADc Ribosomal RNA 98.0 4.8E-05 1E-09 75.3 11.4 59 542-604 13-71 (169)
310 PLN02589 caffeoyl-CoA O-methyl 98.0 4.4E-05 9.5E-10 80.2 11.1 113 53-178 67-189 (247)
311 TIGR01983 UbiG ubiquinone bios 98.0 4.7E-05 1E-09 78.6 11.0 108 542-693 45-152 (224)
312 KOG3045 Predicted RNA methylas 98.0 3.6E-05 7.7E-10 79.1 9.7 121 55-204 169-291 (325)
313 PHA03412 putative methyltransf 98.0 4.1E-05 8.9E-10 79.2 10.3 57 543-604 50-109 (241)
314 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.0 2E-05 4.3E-10 82.9 8.1 153 23-181 14-201 (256)
315 KOG1661 Protein-L-isoaspartate 98.0 4E-05 8.7E-10 76.7 9.6 113 52-179 67-193 (237)
316 TIGR03840 TMPT_Se_Te thiopurin 98.0 2.9E-05 6.3E-10 79.9 9.1 105 542-688 34-150 (213)
317 PRK12335 tellurite resistance 97.9 2.7E-05 5.8E-10 84.0 9.0 101 543-688 121-221 (287)
318 TIGR03587 Pse_Me-ase pseudamin 97.9 5.7E-05 1.2E-09 77.3 10.9 58 541-603 42-99 (204)
319 COG0500 SmtA SAM-dependent met 97.9 0.0001 2.2E-09 68.4 11.7 102 72-184 52-160 (257)
320 PF03602 Cons_hypoth95: Conser 97.9 3.2E-05 6.9E-10 77.7 8.6 123 52-182 27-156 (183)
321 PF02384 N6_Mtase: N-6 DNA Met 97.9 0.00024 5.2E-09 77.4 16.2 174 47-226 28-235 (311)
322 PRK05031 tRNA (uracil-5-)-meth 97.9 0.00011 2.4E-09 81.8 13.7 122 70-206 208-345 (362)
323 PRK13255 thiopurine S-methyltr 97.9 3E-05 6.6E-10 80.1 8.3 104 542-687 37-152 (218)
324 TIGR03438 probable methyltrans 97.9 0.00022 4.9E-09 77.4 15.1 114 541-690 62-177 (301)
325 PF13489 Methyltransf_23: Meth 97.9 8.2E-05 1.8E-09 72.0 10.5 100 541-695 21-120 (161)
326 TIGR02143 trmA_only tRNA (urac 97.9 0.00015 3.2E-09 80.5 13.6 122 70-206 199-336 (353)
327 PF00891 Methyltransf_2: O-met 97.9 4.9E-05 1.1E-09 79.7 9.4 98 541-689 99-198 (241)
328 PRK05785 hypothetical protein; 97.9 0.00017 3.6E-09 75.1 13.1 90 542-683 51-140 (226)
329 PF03141 Methyltransf_29: Puta 97.9 5.4E-06 1.2E-10 92.9 1.8 99 70-179 119-219 (506)
330 PRK15068 tRNA mo(5)U34 methylt 97.9 0.00011 2.4E-09 80.4 12.0 102 542-690 122-226 (322)
331 KOG1269 SAM-dependent methyltr 97.9 1.8E-05 4E-10 87.3 5.9 107 67-181 109-217 (364)
332 PF10672 Methyltrans_SAM: S-ad 97.9 0.00036 7.7E-09 74.8 15.5 128 514-693 108-241 (286)
333 TIGR00095 RNA methyltransferas 97.9 0.00017 3.7E-09 72.9 12.5 108 543-691 50-160 (189)
334 COG0293 FtsJ 23S rRNA methylas 97.8 0.00025 5.4E-09 71.8 13.2 108 67-184 44-164 (205)
335 PRK06202 hypothetical protein; 97.8 0.00027 5.9E-09 73.6 13.8 110 541-696 59-172 (232)
336 PRK04338 N(2),N(2)-dimethylgua 97.8 0.00011 2.4E-09 82.1 11.2 99 544-689 59-157 (382)
337 PRK11933 yebU rRNA (cytosine-C 97.8 0.00016 3.4E-09 82.8 12.6 115 67-181 112-244 (470)
338 PRK03522 rumB 23S rRNA methylu 97.8 0.00017 3.7E-09 78.8 12.3 63 543-607 174-236 (315)
339 PF05185 PRMT5: PRMT5 arginine 97.8 7.9E-05 1.7E-09 84.9 9.9 101 543-687 187-294 (448)
340 PF01728 FtsJ: FtsJ-like methy 97.8 2.3E-05 5E-10 78.4 4.9 108 68-185 23-145 (181)
341 KOG0820 Ribosomal RNA adenine 97.8 0.0003 6.6E-09 73.1 12.7 78 64-145 54-133 (315)
342 PF01564 Spermine_synth: Sperm 97.8 0.00012 2.5E-09 77.2 10.1 109 68-179 76-191 (246)
343 TIGR00479 rumA 23S rRNA (uraci 97.8 0.00017 3.7E-09 82.3 12.3 103 542-688 292-394 (431)
344 TIGR00452 methyltransferase, p 97.8 0.00012 2.6E-09 79.6 10.4 103 542-691 121-226 (314)
345 TIGR01177 conserved hypothetic 97.8 0.00029 6.2E-09 77.5 13.5 110 542-693 182-297 (329)
346 COG0116 Predicted N6-adenine-s 97.8 0.00027 5.8E-09 77.7 12.9 125 52-180 178-345 (381)
347 KOG4300 Predicted methyltransf 97.8 8.9E-05 1.9E-09 74.0 8.2 123 542-711 76-201 (252)
348 PRK04338 N(2),N(2)-dimethylgua 97.7 0.00015 3.2E-09 81.1 11.0 113 52-178 43-157 (382)
349 PRK00050 16S rRNA m(4)C1402 me 97.7 8.4E-05 1.8E-09 79.9 8.7 88 52-143 6-98 (296)
350 TIGR02021 BchM-ChlM magnesium 97.7 9.6E-05 2.1E-09 76.3 8.9 101 541-688 54-156 (219)
351 COG2521 Predicted archaeal met 97.7 3.8E-05 8.2E-10 77.9 5.6 109 67-179 133-245 (287)
352 PF02475 Met_10: Met-10+ like- 97.7 0.00014 3.1E-09 73.9 9.8 97 67-176 100-199 (200)
353 COG0421 SpeE Spermidine syntha 97.7 0.00022 4.7E-09 76.3 11.4 106 70-178 78-189 (282)
354 TIGR02085 meth_trns_rumB 23S r 97.7 0.00026 5.6E-09 79.2 12.1 101 543-690 234-334 (374)
355 PRK00536 speE spermidine synth 97.7 0.00047 1E-08 72.9 12.9 96 67-179 71-171 (262)
356 KOG2904 Predicted methyltransf 97.7 0.0004 8.7E-09 72.2 11.9 124 542-697 148-294 (328)
357 PRK11727 23S rRNA mA1618 methy 97.6 0.00028 6E-09 76.9 10.8 82 68-149 114-203 (321)
358 PRK13168 rumA 23S rRNA m(5)U19 97.6 0.00033 7.1E-09 80.2 12.0 104 542-690 297-400 (443)
359 KOG1709 Guanidinoacetate methy 97.6 0.00038 8.1E-09 69.9 10.6 127 541-717 100-227 (271)
360 PRK11727 23S rRNA mA1618 methy 97.6 0.00044 9.5E-09 75.3 12.3 65 540-604 112-179 (321)
361 PF13578 Methyltransf_24: Meth 97.6 3.7E-05 8E-10 69.8 3.2 98 547-689 1-104 (106)
362 KOG3010 Methyltransferase [Gen 97.6 0.00011 2.4E-09 75.2 6.7 103 543-692 34-139 (261)
363 PF08123 DOT1: Histone methyla 97.6 0.00037 7.9E-09 71.3 10.7 103 67-178 41-157 (205)
364 PF03602 Cons_hypoth95: Conser 97.6 0.00025 5.4E-09 71.3 9.2 110 542-693 42-156 (183)
365 TIGR00308 TRM1 tRNA(guanine-26 97.6 0.00034 7.4E-09 77.9 11.1 101 543-689 45-146 (374)
366 COG0030 KsgA Dimethyladenosine 97.6 0.00033 7E-09 73.7 10.3 87 53-145 18-105 (259)
367 PF03059 NAS: Nicotianamine sy 97.6 0.00022 4.7E-09 75.8 8.8 147 542-731 120-273 (276)
368 PF03848 TehB: Tellurite resis 97.6 0.00023 5E-09 71.8 8.2 129 542-716 30-166 (192)
369 COG0742 N6-adenine-specific me 97.6 0.0012 2.6E-08 65.9 13.0 143 52-206 28-176 (187)
370 PF04816 DUF633: Family of unk 97.5 0.0011 2.4E-08 67.7 12.9 138 72-226 1-142 (205)
371 PF00398 RrnaAD: Ribosomal RNA 97.5 0.001 2.3E-08 70.7 13.1 125 50-191 15-142 (262)
372 PF03059 NAS: Nicotianamine sy 97.5 0.00078 1.7E-08 71.6 11.9 130 43-179 95-230 (276)
373 PF05958 tRNA_U5-meth_tr: tRNA 97.5 0.00063 1.4E-08 75.5 11.7 134 52-204 184-333 (352)
374 COG4976 Predicted methyltransf 97.5 6.9E-05 1.5E-09 75.8 3.6 103 541-692 124-227 (287)
375 PTZ00338 dimethyladenosine tra 97.5 0.0013 2.8E-08 71.1 12.9 61 542-604 36-97 (294)
376 PLN02585 magnesium protoporphy 97.5 0.00087 1.9E-08 73.1 11.7 59 542-602 144-207 (315)
377 PF07021 MetW: Methionine bios 97.5 0.00044 9.5E-09 69.2 8.4 61 541-609 12-72 (193)
378 KOG3178 Hydroxyindole-O-methyl 97.4 0.00045 9.7E-09 74.7 8.9 100 69-181 178-277 (342)
379 PRK05031 tRNA (uracil-5-)-meth 97.4 0.001 2.2E-08 74.2 12.1 63 544-608 208-270 (362)
380 COG2520 Predicted methyltransf 97.4 0.0011 2.3E-08 72.6 11.9 107 67-185 187-295 (341)
381 PF01269 Fibrillarin: Fibrilla 97.4 0.00091 2E-08 68.3 10.3 140 541-728 72-226 (229)
382 KOG1271 Methyltransferases [Ge 97.4 0.0007 1.5E-08 66.4 9.0 130 542-716 67-205 (227)
383 TIGR02143 trmA_only tRNA (urac 97.4 0.0012 2.5E-08 73.4 12.1 62 544-607 199-260 (353)
384 PF01269 Fibrillarin: Fibrilla 97.4 0.002 4.3E-08 65.8 12.5 124 46-179 51-178 (229)
385 TIGR00308 TRM1 tRNA(guanine-26 97.4 0.00058 1.3E-08 76.1 9.5 100 69-179 45-147 (374)
386 PF05891 Methyltransf_PK: AdoM 97.4 0.00033 7.2E-09 71.3 6.8 106 541-693 54-166 (218)
387 PRK07580 Mg-protoporphyrin IX 97.4 0.0009 2E-08 69.2 10.1 57 542-600 63-120 (230)
388 COG2263 Predicted RNA methylas 97.4 0.0011 2.5E-08 65.7 10.0 92 543-680 46-137 (198)
389 COG2265 TrmA SAM-dependent met 97.3 0.0014 3E-08 74.4 11.9 123 53-190 281-406 (432)
390 PF09243 Rsm22: Mitochondrial 97.3 0.0015 3.2E-08 70.0 11.2 126 50-185 15-145 (274)
391 COG0030 KsgA Dimethyladenosine 97.3 0.0005 1.1E-08 72.3 7.4 58 543-604 31-88 (259)
392 COG0357 GidB Predicted S-adeno 97.3 0.0013 2.8E-08 67.5 9.9 98 69-179 68-168 (215)
393 TIGR02987 met_A_Alw26 type II 97.3 0.0017 3.6E-08 76.1 12.1 99 50-148 9-125 (524)
394 PF13679 Methyltransf_32: Meth 97.3 0.0023 4.9E-08 61.5 10.9 98 67-178 24-130 (141)
395 PRK01747 mnmC bifunctional tRN 97.3 0.0016 3.6E-08 78.4 12.1 108 541-687 56-203 (662)
396 COG3963 Phospholipid N-methylt 97.3 0.0031 6.7E-08 61.3 11.3 111 541-692 47-158 (194)
397 PF05430 Methyltransf_30: S-ad 97.2 0.0021 4.6E-08 60.4 9.9 94 591-729 30-123 (124)
398 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.2 0.0041 9E-08 66.9 13.6 161 513-717 65-246 (283)
399 KOG3191 Predicted N6-DNA-methy 97.2 0.004 8.6E-08 61.3 11.7 123 542-707 43-183 (209)
400 COG0144 Sun tRNA and rRNA cyto 97.2 0.0051 1.1E-07 68.4 13.9 140 541-715 155-313 (355)
401 PRK00274 ksgA 16S ribosomal RN 97.1 0.00091 2E-08 71.6 7.3 58 542-604 42-99 (272)
402 TIGR02081 metW methionine bios 97.1 0.0014 3E-08 66.3 8.3 55 542-604 13-67 (194)
403 PF02527 GidB: rRNA small subu 97.1 0.0023 5E-08 64.3 9.6 96 71-179 51-148 (184)
404 KOG1661 Protein-L-isoaspartate 97.1 0.0021 4.6E-08 64.6 8.9 101 542-691 82-194 (237)
405 KOG4589 Cell division protein 97.1 0.0052 1.1E-07 60.7 11.3 108 67-184 68-189 (232)
406 PF01728 FtsJ: FtsJ-like methy 97.1 0.00092 2E-08 66.8 6.5 143 541-726 22-176 (181)
407 COG1889 NOP1 Fibrillarin-like 97.1 0.0041 8.9E-08 62.3 10.6 125 44-178 52-179 (231)
408 PLN02232 ubiquinone biosynthes 97.1 0.003 6.5E-08 62.1 9.8 82 570-694 1-85 (160)
409 PRK13256 thiopurine S-methyltr 97.1 0.0024 5.3E-08 66.2 9.2 135 542-716 43-193 (226)
410 KOG3987 Uncharacterized conser 97.1 0.00014 3.1E-09 72.4 0.1 95 68-179 112-207 (288)
411 PF05724 TPMT: Thiopurine S-me 97.1 0.0029 6.2E-08 65.5 9.7 134 541-716 36-186 (218)
412 PRK00050 16S rRNA m(4)C1402 me 97.1 0.004 8.6E-08 67.2 11.1 65 543-609 20-85 (296)
413 COG0742 N6-adenine-specific me 97.1 0.0056 1.2E-07 61.2 11.3 109 542-691 43-155 (187)
414 PF06962 rRNA_methylase: Putat 97.0 0.013 2.8E-07 56.0 12.4 125 93-223 1-140 (140)
415 PF11968 DUF3321: Putative met 97.0 0.0023 5.1E-08 65.1 7.8 90 69-179 52-149 (219)
416 KOG1709 Guanidinoacetate methy 96.9 0.0053 1.2E-07 61.9 9.9 105 67-178 100-205 (271)
417 PRK14896 ksgA 16S ribosomal RN 96.9 0.0019 4.1E-08 68.6 7.1 59 542-604 29-87 (258)
418 KOG2915 tRNA(1-methyladenosine 96.9 0.0072 1.6E-07 63.1 10.6 118 54-187 94-218 (314)
419 PF09445 Methyltransf_15: RNA 96.9 0.0016 3.4E-08 64.0 5.6 71 71-142 2-76 (163)
420 KOG1541 Predicted protein carb 96.9 0.0057 1.2E-07 62.0 9.5 132 541-718 49-189 (270)
421 PF02475 Met_10: Met-10+ like- 96.9 0.0016 3.5E-08 66.3 5.8 99 541-687 100-199 (200)
422 KOG1663 O-methyltransferase [S 96.9 0.0082 1.8E-07 61.5 10.7 114 52-178 60-182 (237)
423 PF10294 Methyltransf_16: Puta 96.9 0.0057 1.2E-07 60.9 9.5 124 541-707 44-172 (173)
424 TIGR00755 ksgA dimethyladenosi 96.8 0.0027 5.9E-08 67.1 7.3 59 542-604 29-87 (253)
425 PF04672 Methyltransf_19: S-ad 96.8 0.0072 1.6E-07 63.8 10.3 110 69-183 69-194 (267)
426 COG3897 Predicted methyltransf 96.8 0.0059 1.3E-07 60.9 8.7 110 67-187 78-187 (218)
427 COG0144 Sun tRNA and rRNA cyto 96.8 0.019 4.2E-07 63.8 13.8 116 67-182 155-291 (355)
428 PF01739 CheR: CheR methyltran 96.7 0.0028 6E-08 64.5 6.1 45 541-585 30-83 (196)
429 COG4076 Predicted RNA methylas 96.7 0.0033 7.1E-08 62.0 6.2 59 544-604 34-92 (252)
430 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.6 0.014 3.1E-07 62.8 11.2 116 67-182 84-222 (283)
431 PF02527 GidB: rRNA small subu 96.6 0.089 1.9E-06 53.0 16.1 96 545-691 51-149 (184)
432 KOG2798 Putative trehalase [Ca 96.6 0.0095 2.1E-07 63.3 8.9 103 68-178 150-295 (369)
433 KOG0820 Ribosomal RNA adenine 96.5 0.0075 1.6E-07 63.0 7.7 61 541-603 57-118 (315)
434 KOG2915 tRNA(1-methyladenosine 96.5 0.06 1.3E-06 56.5 14.1 128 541-717 104-236 (314)
435 PF05219 DREV: DREV methyltran 96.5 0.016 3.5E-07 60.6 9.9 96 542-691 94-189 (265)
436 COG4262 Predicted spermidine s 96.4 0.01 2.2E-07 64.1 8.3 106 68-179 289-407 (508)
437 COG2384 Predicted SAM-dependen 96.4 0.056 1.2E-06 55.2 13.1 148 57-225 10-160 (226)
438 PRK11760 putative 23S rRNA C24 96.4 0.013 2.7E-07 63.9 9.1 87 67-172 210-296 (357)
439 PF09445 Methyltransf_15: RNA 96.4 0.0083 1.8E-07 59.0 6.9 61 545-609 2-65 (163)
440 PF08003 Methyltransf_9: Prote 96.4 0.014 3.1E-07 62.4 9.1 103 542-691 115-220 (315)
441 PF00398 RrnaAD: Ribosomal RNA 96.3 0.0055 1.2E-07 65.2 5.9 59 542-604 30-88 (262)
442 PRK10611 chemotaxis methyltran 96.3 0.0049 1.1E-07 66.3 5.0 44 542-585 115-166 (287)
443 COG4076 Predicted RNA methylas 96.2 0.0088 1.9E-07 59.1 5.9 98 69-176 33-132 (252)
444 COG1352 CheR Methylase of chem 96.1 0.015 3.2E-07 61.9 7.7 44 542-585 96-148 (268)
445 TIGR00006 S-adenosyl-methyltra 96.1 0.026 5.6E-07 61.1 9.6 90 49-141 4-98 (305)
446 COG1889 NOP1 Fibrillarin-like 96.1 0.1 2.3E-06 52.5 12.7 146 504-709 50-206 (231)
447 TIGR01444 fkbM_fam methyltrans 96.0 0.018 3.9E-07 54.8 7.1 59 71-129 1-61 (143)
448 PF13578 Methyltransf_24: Meth 95.9 0.0051 1.1E-07 55.7 2.5 97 73-179 1-105 (106)
449 KOG2187 tRNA uracil-5-methyltr 95.9 0.012 2.5E-07 66.7 5.6 70 55-128 373-443 (534)
450 KOG1499 Protein arginine N-met 95.9 0.031 6.6E-07 60.8 8.6 61 542-604 60-121 (346)
451 KOG2730 Methylase [General fun 95.9 0.021 4.6E-07 58.0 6.8 73 68-141 94-171 (263)
452 PF07091 FmrO: Ribosomal RNA m 95.8 0.029 6.3E-07 58.5 8.0 82 67-150 104-186 (251)
453 PRK04148 hypothetical protein; 95.7 0.033 7.1E-07 52.9 7.3 54 541-603 15-69 (134)
454 PRK10742 putative methyltransf 95.6 0.041 8.9E-07 57.6 8.2 67 541-609 87-162 (250)
455 PF03291 Pox_MCEL: mRNA cappin 95.5 0.062 1.3E-06 59.1 9.4 147 542-732 62-238 (331)
456 PF12147 Methyltransf_20: Puta 95.4 0.24 5.2E-06 52.8 13.0 152 510-706 99-264 (311)
457 PRK10742 putative methyltransf 95.2 0.067 1.4E-06 56.0 8.2 87 57-147 78-176 (250)
458 KOG3115 Methyltransferase-like 95.2 0.031 6.8E-07 56.0 5.4 109 69-180 61-184 (249)
459 COG1189 Predicted rRNA methyla 95.2 0.093 2E-06 54.3 8.9 98 67-179 78-178 (245)
460 COG5459 Predicted rRNA methyla 95.2 0.074 1.6E-06 57.4 8.4 114 67-186 112-232 (484)
461 COG0286 HsdM Type I restrictio 95.2 0.28 6E-06 57.0 14.0 148 29-180 151-327 (489)
462 TIGR02987 met_A_Alw26 type II 95.1 0.061 1.3E-06 63.1 8.5 63 542-604 31-101 (524)
463 PF11599 AviRa: RRNA methyltra 95.0 0.28 6.1E-06 49.9 11.6 123 55-177 38-212 (246)
464 KOG0822 Protein kinase inhibit 95.0 0.066 1.4E-06 60.7 7.8 153 517-716 346-511 (649)
465 PF04989 CmcI: Cephalosporin h 95.0 0.034 7.3E-07 56.6 5.1 106 68-181 32-149 (206)
466 COG0357 GidB Predicted S-adeno 95.0 0.5 1.1E-05 48.6 13.6 126 543-719 68-200 (215)
467 KOG1500 Protein arginine N-met 94.9 0.1 2.2E-06 56.0 8.5 99 542-687 177-279 (517)
468 PF01861 DUF43: Protein of unk 94.8 0.35 7.6E-06 50.3 12.0 105 542-694 44-153 (243)
469 COG4627 Uncharacterized protei 94.7 0.0064 1.4E-07 58.3 -0.8 58 117-180 30-87 (185)
470 COG2265 TrmA SAM-dependent met 94.7 0.32 6.9E-06 55.5 12.4 112 542-700 293-404 (432)
471 TIGR01444 fkbM_fam methyltrans 94.7 0.076 1.6E-06 50.5 6.4 54 546-599 2-55 (143)
472 COG2520 Predicted methyltransf 94.7 0.24 5.3E-06 54.4 11.0 121 541-709 187-308 (341)
473 COG0293 FtsJ 23S rRNA methylas 94.5 0.32 6.8E-06 49.6 10.7 142 542-728 45-199 (205)
474 KOG4589 Cell division protein 94.5 0.3 6.5E-06 48.6 10.0 146 542-731 69-227 (232)
475 COG1063 Tdh Threonine dehydrog 94.3 0.37 8.1E-06 53.5 11.8 100 545-693 171-272 (350)
476 KOG0024 Sorbitol dehydrogenase 94.3 0.25 5.4E-06 53.3 9.7 48 541-589 168-216 (354)
477 KOG3178 Hydroxyindole-O-methyl 94.2 0.07 1.5E-06 58.1 5.6 91 543-688 178-273 (342)
478 TIGR00478 tly hemolysin TlyA f 94.2 0.12 2.6E-06 53.8 7.2 39 542-581 75-113 (228)
479 KOG1122 tRNA and rRNA cytosine 94.0 0.28 6.1E-06 54.5 9.7 116 66-182 239-374 (460)
480 PF05958 tRNA_U5-meth_tr: tRNA 94.0 0.22 4.8E-06 55.4 9.1 129 544-709 198-326 (352)
481 KOG2361 Predicted methyltransf 93.9 0.096 2.1E-06 54.1 5.6 109 544-691 73-184 (264)
482 PF01170 UPF0020: Putative RNA 93.9 0.24 5.1E-06 49.7 8.3 106 542-687 28-148 (179)
483 PF02384 N6_Mtase: N-6 DNA Met 93.8 0.18 3.9E-06 54.8 8.1 120 541-691 45-184 (311)
484 TIGR00006 S-adenosyl-methyltra 93.7 0.47 1E-05 51.5 10.8 65 544-609 22-86 (305)
485 KOG1122 tRNA and rRNA cytosine 93.6 0.32 7E-06 54.0 9.3 141 541-717 240-398 (460)
486 COG4798 Predicted methyltransf 93.6 0.3 6.5E-06 48.9 8.1 112 67-180 47-167 (238)
487 PRK11760 putative 23S rRNA C24 93.5 0.49 1.1E-05 51.9 10.3 113 541-709 210-327 (357)
488 KOG3201 Uncharacterized conser 93.4 0.071 1.5E-06 51.7 3.4 117 68-191 29-152 (201)
489 KOG1596 Fibrillarin and relate 93.4 0.37 8E-06 49.7 8.6 104 66-179 154-261 (317)
490 PF05971 Methyltransf_10: Prot 93.3 0.57 1.2E-05 50.6 10.4 79 69-149 103-191 (299)
491 PF04989 CmcI: Cephalosporin h 93.3 0.18 4E-06 51.3 6.3 108 541-688 31-145 (206)
492 PF04816 DUF633: Family of unk 93.2 0.35 7.5E-06 49.6 8.3 99 546-691 1-102 (205)
493 KOG2730 Methylase [General fun 93.2 0.26 5.6E-06 50.3 7.1 54 550-609 104-160 (263)
494 KOG1099 SAM-dependent methyltr 93.2 0.2 4.4E-06 51.2 6.3 105 69-183 42-167 (294)
495 PF01861 DUF43: Protein of unk 93.1 1.6 3.5E-05 45.5 12.9 107 68-183 44-152 (243)
496 COG1064 AdhP Zn-dependent alco 92.9 0.26 5.6E-06 54.1 7.3 95 66-181 164-261 (339)
497 PF02005 TRM: N2,N2-dimethylgu 92.7 0.49 1.1E-05 53.1 9.3 102 542-689 49-153 (377)
498 COG0275 Predicted S-adenosylme 92.7 0.6 1.3E-05 50.1 9.4 82 544-654 25-107 (314)
499 KOG2920 Predicted methyltransf 92.7 0.087 1.9E-06 55.8 3.1 107 67-179 115-234 (282)
500 PF06080 DUF938: Protein of un 92.5 0.26 5.7E-06 50.1 6.3 108 545-689 28-140 (204)
No 1
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-67 Score=572.16 Aligned_cols=451 Identities=41% Similarity=0.648 Sum_probs=413.2
Q ss_pred hcccccCCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCC-eEEEEcCCCchhHHHHHHcCCCeEEE
Q 004133 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPP-QILVPGCGNSRLSEHLYDAGFHGITN 96 (772)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~-~ILDlGCG~G~ls~~La~~g~~~V~g 96 (772)
+|+....|.+..||+.||..++ ...++||+.+..++..|..++. +.. ++|.+|||++.+++.+++.||.+|++
T Consensus 3 ~p~~~~~~~s~~~wd~rf~~rg-~~~~ewY~~~l~l~~~i~~~~~-----p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~ 76 (482)
T KOG2352|consen 3 LPQEQLSFGSVVYWDKRFQPRG-SDPFEWYGALLSLSGSIMKYLS-----PSDFKILQLGCGNSELSEHLYKNGFEDITN 76 (482)
T ss_pred CcccccccCcchhhhhhccccC-CChHHHHHHHHHHHHHHHHhhc-----hhhceeEeecCCCCHHHHHHHhcCCCCcee
Confidence 7889999999999999999986 6899999999999999999985 455 99999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchH---HHHHHHHHHHhccccCe
Q 004133 97 VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHK---LGNQYLSEVKRLLKSGG 173 (772)
Q Consensus 97 vDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~---~~~~~l~ei~rvLkpGG 173 (772)
+|+|+.+++.|..++....+.+.|..+|+..+. |++++||+|+++|++|++..++.... .+..++.+++|+|++||
T Consensus 77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~-fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~g 155 (482)
T KOG2352|consen 77 IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV-FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGG 155 (482)
T ss_pred ccccHHHHHHHHhccccCCcceEEEEecchhcc-CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCC
Confidence 999999999999998877889999999999999 99999999999999999998876655 58899999999999999
Q ss_pred EEEEEEcCchhhhhcccccccCCcEEEEEEcCCCCCCCCCcceEEEEEEecCCccccccccccccCCCccCccchhhHHH
Q 004133 174 KFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHE 253 (772)
Q Consensus 174 ~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 253 (772)
+++.+++.+
T Consensus 156 k~~svtl~~----------------------------------------------------------------------- 164 (482)
T KOG2352|consen 156 KYISVTLVQ----------------------------------------------------------------------- 164 (482)
T ss_pred EEEEEEeee-----------------------------------------------------------------------
Confidence 999998775
Q ss_pred HHHHhhhhhhhhcCCCcccchhhhhhccccccccccCCCceEEEEeCCCCCceeeEEEEEEeCCCCCCCCcccEEEEEee
Q 004133 254 ALESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVP 333 (772)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~y~~~v~D~~~~~~~~~~~~a~fiVP 333 (772)
+||
T Consensus 165 -----------------------------------------------------------------------------~vp 167 (482)
T KOG2352|consen 165 -----------------------------------------------------------------------------VVP 167 (482)
T ss_pred -----------------------------------------------------------------------------ecc
Confidence 899
Q ss_pred CCCccccccCChhhHHHHHHhcCCCEEEEEEecCCCCCCc--hHHHHHhhhHHHHhcCCCCCCCCCCccEEecCCCceee
Q 004133 334 KTRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASAS--MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHR 411 (772)
Q Consensus 334 ~gre~ewlfst~eG~~~l~~sa~~~RLi~v~l~~~~~~~~--~~~vk~el~~~v~~l~p~~~~~~~~ip~l~~~~~i~~r 411 (772)
+||+++|+|+++.|++++..+++..||++|.+++++.|.. +++++..+++.+..+.|+++++..+.|+++.|+++
T Consensus 168 ~~r~~e~~~~~p~G~~~~~~~s~~~~l~~v~l~~gq~~~~~~~~~~~~~~s~~~~~l~~~g~~~~~q~~~ls~g~d~--- 244 (482)
T KOG2352|consen 168 QGRKPEWLFGSPGGSKQMNVSSSGERLAIVALHRGQQYSTPQEDEVQDPLSPFRRQLDPKGEPTQQQREILSIGEDV--- 244 (482)
T ss_pred CCCCeeeeecCccchhhhhhhccCcceEEEEeccCccccchHHhhhccccccceeecccccCChhhhhccccccccc---
Confidence 9999999999999999999999999999999999999998 89999999999999999999888899999877533
Q ss_pred eEEEEEecCCccCEEEEEeecccCCCCcccCCCCCCceeeeEEecCCCCceecceEeeccCCCCCcchhhhhhhcccccc
Q 004133 412 NVVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSK 491 (772)
Q Consensus 412 ~~~~~~~s~~~g~~~Vedv~~e~~~~~~~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~ 491 (772)
..|||.+..|.|++|||++..
T Consensus 245 -------------------------------------~~~~l~~~~n~nv~q~~~k~~---------------------- 265 (482)
T KOG2352|consen 245 -------------------------------------GVRRLPPCGNMNVVQSEAKKD---------------------- 265 (482)
T ss_pred -------------------------------------ccccccCCCCcceecCchhcc----------------------
Confidence 356666666999999996110
Q ss_pred ccccCcccCCCCCCcceeecCCccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEE
Q 004133 492 SKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEA 571 (772)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~ 571 (772)
...||+|+||+.|++|++|+.+... ...+....+||+|+|||.||+||+.++|..++++
T Consensus 266 -------------------r~~~l~s~~h~~m~~g~aL~~n~~~--~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ 324 (482)
T KOG2352|consen 266 -------------------RKPELASQYHQMMIGGLALIMNRPP--QKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITA 324 (482)
T ss_pred -------------------cCcccCcchhhhhhccceeccccCc--hhccccCcEEEEecCCCccccceeeecCccceeE
Confidence 1128999999999999999987654 2346778999999999999999999999999999
Q ss_pred EEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeC
Q 004133 572 VELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV 651 (772)
Q Consensus 572 VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~ 651 (772)
||+||.|+++|+.||||.++.|.+||+.||++|++++.+. ..++.+||+|++|+
T Consensus 325 ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~--------------------------~~~~~~~dvl~~dv 378 (482)
T KOG2352|consen 325 VEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKS--------------------------QQEDICPDVLMVDV 378 (482)
T ss_pred EEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhc--------------------------cccccCCcEEEEEC
Confidence 9999999999999999998889999999999999998732 12368999999999
Q ss_pred CCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEecCC
Q 004133 652 DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSE 731 (772)
Q Consensus 652 ~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~~~ 731 (772)
|++| +.||+|||+.|++..||..++..|.|.|+|++|+++|+..++.++...|+++|+++|.+++++++|.|++|+..+
T Consensus 379 ds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l~~~~~~~~~N~il~~~~~~ 457 (482)
T KOG2352|consen 379 DSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFPQLYHHQLEEDVNEILIGQMPP 457 (482)
T ss_pred CCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhhHHHhhhhccCCCceeEEeecCh
Confidence 9999 899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Cc
Q 004133 732 SC 733 (772)
Q Consensus 732 ~~ 733 (772)
..
T Consensus 458 ~~ 459 (482)
T KOG2352|consen 458 KQ 459 (482)
T ss_pred hc
Confidence 54
No 2
>PRK04457 spermidine synthase; Provisional
Probab=99.97 E-value=1.7e-29 Score=266.88 Aligned_cols=213 Identities=22% Similarity=0.338 Sum_probs=183.0
Q ss_pred eeeeEEecCCCCceecceEeeccCCCCCcchhhhhhhccccccccccCcccCCCCCCcceeecCCccchHHHHHHHHHHh
Q 004133 449 KFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFT 528 (772)
Q Consensus 449 ~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~ 528 (772)
-+|.|.| +.+.+||.+.+. +|..|.++|+++|++++.
T Consensus 26 ~~R~L~f--~~~~~qs~~~~~-----------------------------------------~P~~l~~~y~~~m~~~l~ 62 (262)
T PRK04457 26 GVRSLHL--GSDTVQSSMRID-----------------------------------------DPSELELAYTRAMMGFLL 62 (262)
T ss_pred CEEEEEE--CCCcceeeeecC-----------------------------------------CcccccCHHHHHHHHHHh
Confidence 4999999 667999987764 466788999999997765
Q ss_pred hhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-CCCeEEEEccHHHHHHh
Q 004133 529 LISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVRE 607 (772)
Q Consensus 529 l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-~~rl~v~i~Dg~~~l~~ 607 (772)
+. +.+.+||+||+|+|+++.+++..+|..+|++||+||+|+++|+++|++.. +++++++++||.+|+..
T Consensus 63 ~~----------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~ 132 (262)
T PRK04457 63 FN----------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV 132 (262)
T ss_pred cC----------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh
Confidence 42 45689999999999999999999999999999999999999999999864 58999999999999976
Q ss_pred hcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 608 MKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
.. .+||+|++|++++. .+|..+.+.+|++.++++|+|||+++
T Consensus 133 ~~--------------------------------~~yD~I~~D~~~~~------~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 133 HR--------------------------------HSTDVILVDGFDGE------GIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred CC--------------------------------CCCCEEEEeCCCCC------CCccccCcHHHHHHHHHhcCCCcEEE
Confidence 43 57999999987653 24778999999999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhccc-eEEEeecCCceEEEEEecC-CCcCCCCcHHHHHHHHhhhcCCC
Q 004133 688 VNLVSRSQATKDMVISRMKMVFNH-LFCLQLEEDVNLVLFGLSS-ESCIKDNSFPEAAVQLGKLVKFQ 753 (772)
Q Consensus 688 ~Nl~~~~~~~~~~v~~~l~~vF~~-v~~~~~~~~~N~vl~a~~~-~~~~~~~~l~~~a~~l~~~~~~~ 753 (772)
+|++.++... ..++++++++|++ ++.++..++.|.|+||++. +.......|.++|+.|++.++++
T Consensus 175 in~~~~~~~~-~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~~~~~~~~~~l~~~a~~l~~~~~~~ 241 (262)
T PRK04457 175 VNLWSRDKRY-DRYLERLESSFEGRVLELPAESHGNVAVFAFKSAPKELRWDKLRKRAKKLENEHGLD 241 (262)
T ss_pred EEcCCCchhH-HHHHHHHHHhcCCcEEEEecCCCccEEEEEECCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 9999887654 6679999999985 7888888889999999885 44566677999999999877765
No 3
>PLN02823 spermine synthase
Probab=99.91 E-value=2.9e-23 Score=225.32 Aligned_cols=182 Identities=15% Similarity=0.225 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC----CCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QDK 592 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~----~~~ 592 (772)
+.||+.|+ ++++..+ +.+++||+||+|+|++++.+..+.+..+|++|||||.|+++|++||.+. .++
T Consensus 87 ~~YhE~l~-h~~l~~~--------~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dp 157 (336)
T PLN02823 87 FVYHESLV-HPALLHH--------PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDK 157 (336)
T ss_pred HHHHHHHH-hHHHhhC--------CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCC
Confidence 45998665 4444443 6788999999999999999988877779999999999999999999764 479
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
|++++++||++||++.. .+||+||+|+..+ .. .+|+..|++.+|
T Consensus 158 rv~v~~~Da~~~L~~~~--------------------------------~~yDvIi~D~~dp--~~--~~~~~~Lyt~eF 201 (336)
T PLN02823 158 RLELIINDARAELEKRD--------------------------------EKFDVIIGDLADP--VE--GGPCYQLYTKSF 201 (336)
T ss_pred ceEEEEChhHHHHhhCC--------------------------------CCccEEEecCCCc--cc--cCcchhhccHHH
Confidence 99999999999996642 6799999998543 22 135788999999
Q ss_pred HH-HHHHccCCCcEEEEEecCC----ChhHHHHHHHHHHHhccceEEEee--c--CCceEEEEEecCCCc-CCCCcHHHH
Q 004133 673 LL-TVKDALSEQGLFIVNLVSR----SQATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSESC-IKDNSFPEA 742 (772)
Q Consensus 673 l~-~~~~~L~~~Gilv~Nl~~~----~~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~vl~a~~~~~~-~~~~~l~~~ 742 (772)
++ .++++|+|+|++++|..+. .......++++++++|++++.+.. + .+....++|++.+.. ++...+.++
T Consensus 202 ~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~~vPsf~~~w~f~~aS~~~~~~~~~~~~~~~ 281 (336)
T PLN02823 202 YERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTAHVPSFADTWGWVMASDHPFADLSAEELDSR 281 (336)
T ss_pred HHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEeecCCCCCceEEEEEeCCccccCChhHHHHh
Confidence 99 9999999999999998653 255678899999999999877763 2 233567888876532 344445444
Q ss_pred H
Q 004133 743 A 743 (772)
Q Consensus 743 a 743 (772)
.
T Consensus 282 ~ 282 (336)
T PLN02823 282 I 282 (336)
T ss_pred h
Confidence 3
No 4
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.90 E-value=5.2e-22 Score=209.97 Aligned_cols=188 Identities=21% Similarity=0.375 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC----CC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----DK 592 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~----~~ 592 (772)
+.|| .|++.+++.++ +++++|||||+|.|++++.+.++.+..++++|||||.|+++||+||+... |+
T Consensus 60 ~~yh-Eml~h~~~~ah--------~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dp 130 (282)
T COG0421 60 FIYH-EMLAHVPLLAH--------PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDP 130 (282)
T ss_pred HHHH-HHHHhchhhhC--------CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCC
Confidence 4555 57777777776 77789999999999999999999988899999999999999999997665 89
Q ss_pred CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHH
Q 004133 593 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 672 (772)
Q Consensus 593 rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~f 672 (772)
|++++++||.+||++.. .+||+||+|.+.+ . .|.+.|++.+|
T Consensus 131 Rv~i~i~Dg~~~v~~~~--------------------------------~~fDvIi~D~tdp--~----gp~~~Lft~eF 172 (282)
T COG0421 131 RVEIIIDDGVEFLRDCE--------------------------------EKFDVIIVDSTDP--V----GPAEALFTEEF 172 (282)
T ss_pred ceEEEeccHHHHHHhCC--------------------------------CcCCEEEEcCCCC--C----CcccccCCHHH
Confidence 99999999999999975 4799999987655 2 27899999999
Q ss_pred HHHHHHccCCCcEEEEEecCCC--hhHHHHHHHHHHHhccc--eEEEeecC--Cc-eEEEEEecCCC-cCC-CCcHHHHH
Q 004133 673 LLTVKDALSEQGLFIVNLVSRS--QATKDMVISRMKMVFNH--LFCLQLEE--DV-NLVLFGLSSES-CIK-DNSFPEAA 743 (772)
Q Consensus 673 l~~~~~~L~~~Gilv~Nl~~~~--~~~~~~v~~~l~~vF~~--v~~~~~~~--~~-N~vl~a~~~~~-~~~-~~~l~~~a 743 (772)
++.++++|+++|+++.|.-+.. .+....+...++++|+. .|...++. .. -.+++++.... .+. .+....++
T Consensus 173 y~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~~~~~~~~~~~~~~~~~ 252 (282)
T COG0421 173 YEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNKAHPLKSLDALQARA 252 (282)
T ss_pred HHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEeecCCCCcccchhHHHHHH
Confidence 9999999999999999932211 13345667888999984 33333332 22 34666663332 222 22344455
Q ss_pred HHHhhhcCC
Q 004133 744 VQLGKLVKF 752 (772)
Q Consensus 744 ~~l~~~~~~ 752 (772)
..+ ..+++
T Consensus 253 ~~~-~~~~y 260 (282)
T COG0421 253 LAL-LTLKY 260 (282)
T ss_pred hhh-hhhcc
Confidence 555 44443
No 5
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.89 E-value=2.3e-22 Score=210.47 Aligned_cols=170 Identities=24% Similarity=0.385 Sum_probs=132.7
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC----CCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQD 591 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~----~~~ 591 (772)
...||+.|+ ++++..+ +++++||+||+|+|++++.+.++.+..+|++|||||.|+++|++||+. ..|
T Consensus 59 e~~y~e~l~-h~~~~~~--------~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d 129 (246)
T PF01564_consen 59 EFIYHEMLV-HPPLLLH--------PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDD 129 (246)
T ss_dssp HHHHHHHHH-HHHHHHS--------SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGS
T ss_pred hHHHHHHHh-hhHhhcC--------CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCC
Confidence 367888766 4444443 688999999999999999999987777999999999999999999954 258
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
+|++++++||+.||++.. ..+||+||+|+.+++ +|+..+++.+
T Consensus 130 ~r~~i~~~Dg~~~l~~~~-------------------------------~~~yDvIi~D~~dp~------~~~~~l~t~e 172 (246)
T PF01564_consen 130 PRVRIIIGDGRKFLKETQ-------------------------------EEKYDVIIVDLTDPD------GPAPNLFTRE 172 (246)
T ss_dssp TTEEEEESTHHHHHHTSS-------------------------------ST-EEEEEEESSSTT------SCGGGGSSHH
T ss_pred CceEEEEhhhHHHHHhcc-------------------------------CCcccEEEEeCCCCC------CCcccccCHH
Confidence 999999999999999975 128999999998753 2455599999
Q ss_pred HHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEe--ecC-CceEEEEEecCC
Q 004133 672 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE-DVNLVLFGLSSE 731 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~-~~N~vl~a~~~~ 731 (772)
|++.++++|+|+|++++|..+. .......+.++++++|+++..+. ++. ..+...|+..+.
T Consensus 173 f~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~ 237 (246)
T PF01564_consen 173 FYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASK 237 (246)
T ss_dssp HHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEES
T ss_pred HHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEeC
Confidence 9999999999999999998543 45667788999999999766554 444 334444554443
No 6
>PRK00811 spermidine synthase; Provisional
Probab=99.87 E-value=8.6e-21 Score=202.99 Aligned_cols=168 Identities=24% Similarity=0.337 Sum_probs=135.3
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC-----CCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----FTQ 590 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-----~~~ 590 (772)
.+.||+ |+++++++.+ +++.+||+||+|+|.++..+.++.+..+|++|||||.|+++|++||. ..+
T Consensus 59 e~~Y~e-~l~h~~~~~~--------~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~ 129 (283)
T PRK00811 59 EFIYHE-MMTHVPLFAH--------PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYD 129 (283)
T ss_pred hhhHHH-HhhhHHHhhC--------CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccccc
Confidence 367988 5556666654 67889999999999999988887666699999999999999999993 336
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcH
Q 004133 591 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 670 (772)
Q Consensus 591 ~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~ 670 (772)
++|++++++||++|++.. ..+||+||+|+..+. +|+..+++.
T Consensus 130 d~rv~v~~~Da~~~l~~~--------------------------------~~~yDvIi~D~~dp~------~~~~~l~t~ 171 (283)
T PRK00811 130 DPRVELVIGDGIKFVAET--------------------------------ENSFDVIIVDSTDPV------GPAEGLFTK 171 (283)
T ss_pred CCceEEEECchHHHHhhC--------------------------------CCcccEEEECCCCCC------CchhhhhHH
Confidence 899999999999999773 267999999875442 367789999
Q ss_pred HHHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEee--cC---CceEEEEEecC
Q 004133 671 SFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--EE---DVNLVLFGLSS 730 (772)
Q Consensus 671 ~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~~---~~N~vl~a~~~ 730 (772)
+|++.++++|+|||++++|..+. +......++++++++|+++..+.. +. +....++|++.
T Consensus 172 ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as~~ 238 (283)
T PRK00811 172 EFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKN 238 (283)
T ss_pred HHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchheeEEeecC
Confidence 99999999999999999997543 455677889999999999877663 22 22345777774
No 7
>PLN02366 spermidine synthase
Probab=99.86 E-value=3e-20 Score=199.96 Aligned_cols=169 Identities=21% Similarity=0.329 Sum_probs=134.0
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC----CCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQD 591 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~----~~~ 591 (772)
.+.||. |++++++..+ +++.+||+||+|+|++++.+.++.+..+|++||||+.|+++|++||.. .++
T Consensus 74 e~~Y~e-~l~h~~l~~~--------~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~d 144 (308)
T PLN02366 74 ECAYQE-MITHLPLCSI--------PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDD 144 (308)
T ss_pred HHHHHH-HHHHHHHhhC--------CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCC
Confidence 456876 6666776654 678999999999999999999885556999999999999999999942 258
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
+|++++++||++|+++.. +.+||+||+|++.+. .|+..|++.+
T Consensus 145 pRv~vi~~Da~~~l~~~~-------------------------------~~~yDvIi~D~~dp~------~~~~~L~t~e 187 (308)
T PLN02366 145 PRVNLHIGDGVEFLKNAP-------------------------------EGTYDAIIVDSSDPV------GPAQELFEKP 187 (308)
T ss_pred CceEEEEChHHHHHhhcc-------------------------------CCCCCEEEEcCCCCC------CchhhhhHHH
Confidence 999999999999998753 257999999886542 2678899999
Q ss_pred HHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhcc-ceEE--EeecC---CceEEEEEecC
Q 004133 672 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFN-HLFC--LQLEE---DVNLVLFGLSS 730 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~-~v~~--~~~~~---~~N~vl~a~~~ 730 (772)
|++.++++|+|||++++|.-+. .......++++++++|+ .+.. ..++. +....++|++.
T Consensus 188 f~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 188 FFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred HHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence 9999999999999999876432 35566788999999994 4433 23332 33557788776
No 8
>PRK01581 speE spermidine synthase; Validated
Probab=99.82 E-value=4.9e-19 Score=191.22 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-------
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 589 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~------- 589 (772)
+-||.+|+. .++..+ ++|.+||+||+|+|.+++.+.++.+..+|++|||||+|+++|+++|.+.
T Consensus 134 ~iYHE~Lvh-p~m~~h--------~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~ 204 (374)
T PRK01581 134 QIYHEALVH-PIMSKV--------IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF 204 (374)
T ss_pred HHHHHHHHH-HHHHhC--------CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence 558887765 344443 6789999999999999888888866679999999999999999976543
Q ss_pred CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc
Q 004133 590 QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 669 (772)
Q Consensus 590 ~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~ 669 (772)
.++|++++++||++|++... .+||+||+|+..+ .. .++..+++
T Consensus 205 ~DpRV~vvi~Da~~fL~~~~--------------------------------~~YDVIIvDl~DP--~~---~~~~~LyT 247 (374)
T PRK01581 205 FDNRVNVHVCDAKEFLSSPS--------------------------------SLYDVIIIDFPDP--AT---ELLSTLYT 247 (374)
T ss_pred CCCceEEEECcHHHHHHhcC--------------------------------CCccEEEEcCCCc--cc---cchhhhhH
Confidence 58999999999999997743 5799999997543 21 24678999
Q ss_pred HHHHHHHHHccCCCcEEEEEecCCC--hhHHHHHHHHHHHhccceEEEee--c--CCceEEEEEecCCC
Q 004133 670 GSFLLTVKDALSEQGLFIVNLVSRS--QATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSES 732 (772)
Q Consensus 670 ~~fl~~~~~~L~~~Gilv~Nl~~~~--~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~vl~a~~~~~ 732 (772)
.+|++.++++|+|||+|+++..+.. ......+.++++++|..+..+.. + .+....++|++.+.
T Consensus 248 ~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~ 316 (374)
T PRK01581 248 SELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAY 316 (374)
T ss_pred HHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCcc
Confidence 9999999999999999999864442 22335578999999997666543 2 23356777877653
No 9
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.76 E-value=4e-18 Score=163.76 Aligned_cols=167 Identities=29% Similarity=0.480 Sum_probs=125.4
Q ss_pred CCCCHHHHHHHHHhcC-----CCCccc-cccchhhHHHHHHHhhcCCC-----CCCCCeEEEEcCCCchhHHHHHHcCCC
Q 004133 24 DFTSKENWDKFFTIRG-----IGDSFE-WYAEWPQLRDPLISLIGAPT-----SSPPPQILVPGCGNSRLSEHLYDAGFH 92 (772)
Q Consensus 24 ~f~~~~yWd~~y~~~~-----~~~~~e-W~~~~~~l~~~l~~~l~~~~-----~~~~~~ILDlGCG~G~ls~~La~~g~~ 92 (772)
..+.++||++.|..+. +++.-| ||+. .....+..|+.... .+...+|||+|||||.+...|++.||.
T Consensus 14 ~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~--~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~ 91 (227)
T KOG1271|consen 14 KLGTKSYWDAAYELELTNFREHGDEGEVWFGE--DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQ 91 (227)
T ss_pred ccchHHHHHHHHHHHHhhcccCCCccceecCC--cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCC
Confidence 4578999999997653 222233 9986 33333444442210 133459999999999999999999986
Q ss_pred e-EEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccccccccCccch-HHHHHHHHHHHhc
Q 004133 93 G-ITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGH-KLGNQYLSEVKRL 168 (772)
Q Consensus 93 ~-V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~-~~~~~~l~ei~rv 168 (772)
. ++|+|+|+.+++.|+..+....- .++|.+.|+++.. +..+.||+|+++|+++++.-..+.+ ..+..++..+.+.
T Consensus 92 ~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~-~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~l 170 (227)
T KOG1271|consen 92 SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD-FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKL 170 (227)
T ss_pred CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhc
Confidence 5 99999999999999877755443 3999999999987 8899999999999999987533222 3347899999999
Q ss_pred cccCeEEEEEEcCchhhhhcccccccC
Q 004133 169 LKSGGKFVCLTLAESHVLGLLFPKFRF 195 (772)
Q Consensus 169 LkpGG~~ii~~~~~~~~~~~l~~~~~~ 195 (772)
|+|||+|++.+.. +...+|...|..
T Consensus 171 l~~~gifvItSCN--~T~dELv~~f~~ 195 (227)
T KOG1271|consen 171 LSPGGIFVITSCN--FTKDELVEEFEN 195 (227)
T ss_pred cCCCcEEEEEecC--ccHHHHHHHHhc
Confidence 9999999998754 344566666643
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.76 E-value=7.9e-18 Score=173.52 Aligned_cols=124 Identities=24% Similarity=0.429 Sum_probs=107.9
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccC
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTS 127 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~ 127 (772)
.......+...+.. .++.+|||+|||||.++..+++. |..+|+++|+|+.|++.++++....+. +++|+++|+++
T Consensus 36 ~~~Wr~~~i~~~~~---~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~ 112 (238)
T COG2226 36 HRLWRRALISLLGI---KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAEN 112 (238)
T ss_pred hHHHHHHHHHhhCC---CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhh
Confidence 33444555666554 47899999999999999999987 656899999999999999999865433 49999999999
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
|| |+|++||+|.+...|+++.+ .+++|+|++|||||||+++|..++++.
T Consensus 113 LP-f~D~sFD~vt~~fglrnv~d-------~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 113 LP-FPDNSFDAVTISFGLRNVTD-------IDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred CC-CCCCccCEEEeeehhhcCCC-------HHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 99 99999999999999999986 689999999999999999999999874
No 11
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.75 E-value=4e-17 Score=173.80 Aligned_cols=168 Identities=21% Similarity=0.302 Sum_probs=132.5
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC----CCCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG----FTQD 591 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg----~~~~ 591 (772)
...||+.| ++++++.+ +++.+||+||+|+|.++..+..+.+..++++||+|+.|++.|+++|. ...+
T Consensus 55 e~~y~e~l-~~~~l~~~--------~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~ 125 (270)
T TIGR00417 55 EFIYHEMI-AHVPLFTH--------PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDD 125 (270)
T ss_pred HHHHHHHh-hhhHhhcC--------CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccC
Confidence 36687654 45555543 56779999999999999988887666799999999999999999983 2357
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
++++++++||++|++... .+||+||+|...+. .|+..+++.+
T Consensus 126 ~~v~i~~~D~~~~l~~~~--------------------------------~~yDvIi~D~~~~~------~~~~~l~~~e 167 (270)
T TIGR00417 126 PRVDLQIDDGFKFLADTE--------------------------------NTFDVIIVDSTDPV------GPAETLFTKE 167 (270)
T ss_pred CceEEEECchHHHHHhCC--------------------------------CCccEEEEeCCCCC------CcccchhHHH
Confidence 899999999999998743 57999999875442 2567789999
Q ss_pred HHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEee--c---CCceEEEEEecC
Q 004133 672 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E---EDVNLVLFGLSS 730 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~---~~~N~vl~a~~~ 730 (772)
|++.++++|+|||++++|..+. .......+.++++++|+++..+.. + .+....++|++.
T Consensus 168 f~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~ 233 (270)
T TIGR00417 168 FYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKN 233 (270)
T ss_pred HHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECC
Confidence 9999999999999999996543 245567788999999999766543 2 334667888873
No 12
>PRK00536 speE spermidine synthase; Provisional
Probab=99.72 E-value=1e-16 Score=167.90 Aligned_cols=153 Identities=12% Similarity=0.077 Sum_probs=119.5
Q ss_pred chHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-----CCCC
Q 004133 516 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQ 590 (772)
Q Consensus 516 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----g~~~ 590 (772)
.+-||. |+++.+|.+| ++|++|||||.|.|+..+-+.++ |. +|+.||||++|+++|++|| ++ +
T Consensus 55 EfiYHE-mLvHppl~~h--------~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~-~ 122 (262)
T PRK00536 55 LHIESE-LLAHMGGCTK--------KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVK-N 122 (262)
T ss_pred hhhHHH-HHHHHHHhhC--------CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhh-c
Confidence 356775 5667778776 89999999999999998888887 44 9999999999999999998 33 7
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcH
Q 004133 591 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 670 (772)
Q Consensus 591 ~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~ 670 (772)
|||+++++ ++.+.. ..+||+||+|. . .++
T Consensus 123 DpRv~l~~-----~~~~~~-------------------------------~~~fDVIIvDs--~-------------~~~ 151 (262)
T PRK00536 123 NKNFTHAK-----QLLDLD-------------------------------IKKYDLIICLQ--E-------------PDI 151 (262)
T ss_pred CCCEEEee-----hhhhcc-------------------------------CCcCCEEEEcC--C-------------CCh
Confidence 99999997 333321 25799999974 1 348
Q ss_pred HHHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccceEEEe--ecC-CceEEEEEecCC
Q 004133 671 SFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE-DVNLVLFGLSSE 731 (772)
Q Consensus 671 ~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~-~~N~vl~a~~~~ 731 (772)
+|++.++++|+|+|++|...-+. .......+.++++++|+.+..+. ++. +....++|++..
T Consensus 152 ~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~g~wgf~~aS~~~ 217 (262)
T PRK00536 152 HKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_pred HHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEecCCCcchhhhheecCCC
Confidence 99999999999999999986554 35667888999999999765553 222 345577787653
No 13
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.69 E-value=1.2e-16 Score=166.15 Aligned_cols=118 Identities=25% Similarity=0.445 Sum_probs=88.8
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCccccc
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQVFM 132 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~~~~ 132 (772)
.+.+.+.. .++.+|||+|||||.++..+++. + ...|+|+|+|+.|++.++++.... ..+++|+++|++++| ++
T Consensus 38 ~~~~~~~~---~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~ 113 (233)
T PF01209_consen 38 KLIKLLGL---RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FP 113 (233)
T ss_dssp HHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-
T ss_pred HHHhccCC---CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CC
Confidence 34455543 57889999999999999999886 3 347999999999999999887643 348999999999999 99
Q ss_pred CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 133 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 133 ~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+++||+|++...++.+.+ ..++++|++|+|||||++++++++.+.
T Consensus 114 d~sfD~v~~~fglrn~~d-------~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 114 DNSFDAVTCSFGLRNFPD-------RERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp TT-EEEEEEES-GGG-SS-------HHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred CCceeEEEHHhhHHhhCC-------HHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 999999999999998876 578999999999999999999998774
No 14
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.68 E-value=6.8e-15 Score=169.22 Aligned_cols=114 Identities=22% Similarity=0.291 Sum_probs=93.5
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC--cccccC
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS--MQVFMD 133 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~--l~~~~~ 133 (772)
.+...+.. .++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.+++.. ...++++++++|+.+ ++ +++
T Consensus 28 ~il~~l~~---~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~-~~~ 101 (475)
T PLN02336 28 EILSLLPP---YEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLN-ISD 101 (475)
T ss_pred HHHhhcCc---cCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccC-CCC
Confidence 34555543 356799999999999999999875 47999999999999876543 334679999999974 56 778
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++||+|++..+++++.+++ ...++++++++|||||++++...
T Consensus 102 ~~fD~I~~~~~l~~l~~~~-----~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKE-----VENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CCEEEEehhhhHHhCCHHH-----HHHHHHHHHHhcCCCeEEEEEec
Confidence 9999999999999996643 67999999999999999988653
No 15
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.66 E-value=6e-16 Score=158.77 Aligned_cols=141 Identities=19% Similarity=0.282 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHH
Q 004133 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108 (772)
Q Consensus 29 ~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~ 108 (772)
+||+++|+... .-|... .....+..++......++.+|||+|||.|+.+..|+++|+ +|+|+|+|+.+|+.+.
T Consensus 1 ~~Wd~ry~~~~----~~w~~~--~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 1 EFWHERWQEGQ----IGFHQS--EVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFF 73 (213)
T ss_pred ChHHHHHhcCC----CCCccC--CCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHH
Confidence 48999997653 336432 2223333443321112567999999999999999999999 5999999999999864
Q ss_pred HHhcc-------------CCCCcEEEEeeccCccccc-CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeE
Q 004133 109 RRNVR-------------DRSDMRWRVMDMTSMQVFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGK 174 (772)
Q Consensus 109 ~~~~~-------------~~~~v~f~~~D~~~l~~~~-~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~ 174 (772)
+.+.. ...++++.++|+.+++ .. .+.||.|++..+++++..+. +..+++.+.++|||||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-~~~~~~fD~i~D~~~~~~l~~~~-----R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 74 AENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT-AADLGPVDAVYDRAALIALPEEM-----RQRYAAHLLALLPPGAR 147 (213)
T ss_pred HHcCCCcceeccccceeeecCceEEEEccCCCCC-cccCCCcCEEEechhhccCCHHH-----HHHHHHHHHHHcCCCCe
Confidence 43211 2346899999999987 32 46899999999999885433 78999999999999999
Q ss_pred EEEEEcCc
Q 004133 175 FVCLTLAE 182 (772)
Q Consensus 175 ~ii~~~~~ 182 (772)
++++++..
T Consensus 148 ~ll~~~~~ 155 (213)
T TIGR03840 148 QLLITLDY 155 (213)
T ss_pred EEEEEEEc
Confidence 88877653
No 16
>PRK03612 spermidine synthase; Provisional
Probab=99.65 E-value=2.4e-15 Score=173.85 Aligned_cols=167 Identities=17% Similarity=0.252 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-------
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 589 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~------- 589 (772)
..||+.++ ..++..+ +++++||+||+|+|.++..+.++.+..+|++||+||+|+++|+++|.+.
T Consensus 281 ~~y~e~l~-~~~l~~~--------~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~ 351 (521)
T PRK03612 281 YRYHEALV-HPAMAAS--------ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGAL 351 (521)
T ss_pred HHHHHHHH-HHHHhhC--------CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcccc
Confidence 44777654 4444433 6788999999999999998887644369999999999999999965332
Q ss_pred CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc
Q 004133 590 QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 669 (772)
Q Consensus 590 ~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~ 669 (772)
+|+|++++++||++|+++.. .+||+||+|...+. . ..+..+++
T Consensus 352 ~dprv~vi~~Da~~~l~~~~--------------------------------~~fDvIi~D~~~~~--~---~~~~~L~t 394 (521)
T PRK03612 352 DDPRVTVVNDDAFNWLRKLA--------------------------------EKFDVIIVDLPDPS--N---PALGKLYS 394 (521)
T ss_pred CCCceEEEEChHHHHHHhCC--------------------------------CCCCEEEEeCCCCC--C---cchhccch
Confidence 47899999999999997643 57999999864432 1 11467999
Q ss_pred HHHHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHh-ccceEEEe--ecCC-ceEEEEEecC
Q 004133 670 GSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMV-FNHLFCLQ--LEED-VNLVLFGLSS 730 (772)
Q Consensus 670 ~~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~v-F~~v~~~~--~~~~-~N~vl~a~~~ 730 (772)
.+|++.++++|+|||++++|..++ .......+.++++++ | .+..+. ++.- .....+|++.
T Consensus 395 ~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~g~w~f~~as~~ 460 (521)
T PRK03612 395 VEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPYHVNVPSFGEWGFVLAGAG 460 (521)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEEEeCCCCcchhHHHeeeCC
Confidence 999999999999999999997544 345556788999999 8 543332 2222 2236667665
No 17
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.64 E-value=3.2e-15 Score=153.92 Aligned_cols=142 Identities=20% Similarity=0.293 Sum_probs=106.1
Q ss_pred CHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHH
Q 004133 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (772)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~ 106 (772)
+.++|+++|.... .-|... ...+.+.+++......++.+|||+|||.|+.+..|+++|+ +|+|||+|+.+|+.
T Consensus 2 ~~~~Wd~rw~~~~----~~~~~~--~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~ 74 (218)
T PRK13255 2 DPDFWHEKWAENQ----IGFHQE--EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ 74 (218)
T ss_pred CHhHHHHHHcCCC----CCCCCC--CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence 3679999998763 225332 3444555555321123567999999999999999999999 59999999999998
Q ss_pred HHHHhcc-------------CCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCe
Q 004133 107 MLRRNVR-------------DRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 173 (772)
Q Consensus 107 a~~~~~~-------------~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG 173 (772)
+.+.... ...++++.++|+.+++....+.||.|++..+++++.... +.++++.+.++|+|||
T Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~-----R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 75 FFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEM-----RERYVQQLAALLPAGC 149 (218)
T ss_pred HHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHH-----HHHHHHHHHHHcCCCC
Confidence 7543211 134689999999998612236899999999999885533 8899999999999998
Q ss_pred EEEEEEc
Q 004133 174 KFVCLTL 180 (772)
Q Consensus 174 ~~ii~~~ 180 (772)
+++++++
T Consensus 150 ~~~l~~~ 156 (218)
T PRK13255 150 RGLLVTL 156 (218)
T ss_pred eEEEEEE
Confidence 7665443
No 18
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.64 E-value=4.3e-15 Score=152.65 Aligned_cols=165 Identities=17% Similarity=0.291 Sum_probs=122.9
Q ss_pred CCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHH
Q 004133 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (772)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~ 105 (772)
.+.+||+++|++...+ |... ...+.|.+++......++.+||++|||.|..+..|++.|+. |+|+|+|+.+|+
T Consensus 7 ~~~~fW~~rw~~~~~~----f~~~--~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~ 79 (226)
T PRK13256 7 NNNQYWLDRWQNDDVG----FCQE--SPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVL 79 (226)
T ss_pred CCHHHHHHHHhcCCCC----CccC--CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHH
Confidence 3578999999977433 6544 34455555554432235689999999999999999999995 999999999999
Q ss_pred HHHHHhc-------------cCCCCcEEEEeeccCccccc---CCCccEEEecccccccccCccchHHHHHHHHHHHhcc
Q 004133 106 DMLRRNV-------------RDRSDMRWRVMDMTSMQVFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL 169 (772)
Q Consensus 106 ~a~~~~~-------------~~~~~v~f~~~D~~~l~~~~---~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvL 169 (772)
.+.+.+. ....++++.++|+.+++ .. .+.||+|++.++|.++..+ .+.++.+.+.++|
T Consensus 80 ~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~-~~~~~~~~fD~VyDra~~~Alpp~-----~R~~Y~~~l~~lL 153 (226)
T PRK13256 80 SFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP-KIANNLPVFDIWYDRGAYIALPND-----LRTNYAKMMLEVC 153 (226)
T ss_pred HHHHHcCCCcceecccccceeccCceEEEEccCcCCC-ccccccCCcCeeeeehhHhcCCHH-----HHHHHHHHHHHHh
Confidence 9866431 12347899999999986 32 2689999999999999653 3899999999999
Q ss_pred ccCeEEEEEEcCchh--------h-hhcccccccCCcEEEEEE
Q 004133 170 KSGGKFVCLTLAESH--------V-LGLLFPKFRFGWKMSVHA 203 (772)
Q Consensus 170 kpGG~~ii~~~~~~~--------~-~~~l~~~~~~~w~~~~~~ 203 (772)
+|||.++++++..+. + ..++...|...|.+..-.
T Consensus 154 ~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l~ 196 (226)
T PRK13256 154 SNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELID 196 (226)
T ss_pred CCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEee
Confidence 999999998874221 1 124444555556655543
No 19
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.63 E-value=1.2e-15 Score=134.58 Aligned_cols=95 Identities=29% Similarity=0.513 Sum_probs=81.9
Q ss_pred EEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCc
Q 004133 73 LVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPE 152 (772)
Q Consensus 73 LDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~ 152 (772)
||+|||+|..+..+++.+..+|+++|+|+.+++.++++... ..+.+.++|+++++ +++++||+|++.++++++.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~-~~~~sfD~v~~~~~~~~~~~-- 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDLP-FPDNSFDVVFSNSVLHHLED-- 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSSS-S-TT-EEEEEEESHGGGSSH--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhCc-cccccccccccccceeeccC--
Confidence 89999999999999999555899999999999999887743 45669999999999 99999999999999999933
Q ss_pred cchHHHHHHHHHHHhccccCeEEEE
Q 004133 153 LGHKLGNQYLSEVKRLLKSGGKFVC 177 (772)
Q Consensus 153 ~~~~~~~~~l~ei~rvLkpGG~~ii 177 (772)
..++++++.|+|||||++++
T Consensus 76 -----~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 -----PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -----HHHHHHHHHHHEEEEEEEEE
T ss_pred -----HHHHHHHHHHHcCcCeEEeC
Confidence 68999999999999999986
No 20
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.62 E-value=6e-15 Score=156.37 Aligned_cols=120 Identities=25% Similarity=0.340 Sum_probs=99.6
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhc----cCCCCcEEEEeeccC
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNV----RDRSDMRWRVMDMTS 127 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~----~~~~~v~f~~~D~~~ 127 (772)
...+.+++.. .++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.|+++.. ....+++++++|+.+
T Consensus 62 r~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 62 KRMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 3334444543 56889999999999999988876 4 2479999999999999987642 123479999999999
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
++ +++++||+|++..+++++.+ ...++++++|+|||||++++.++..+.
T Consensus 139 lp-~~~~sfD~V~~~~~l~~~~d-------~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 139 LP-FDDCYFDAITMGYGLRNVVD-------RLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred CC-CCCCCEeEEEEecccccCCC-------HHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 99 99999999999999998865 578999999999999999999988643
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.58 E-value=1.3e-14 Score=147.33 Aligned_cols=114 Identities=25% Similarity=0.376 Sum_probs=93.5
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCC
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDE 134 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~ 134 (772)
.+.+.+.. .++.+|||+|||+|.++..|++.|+ +|+|+|+|+.|++.++++....+ .++++.+.|+.+++ + ++
T Consensus 21 ~l~~~l~~---~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~-~-~~ 94 (197)
T PRK11207 21 EVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT-F-DG 94 (197)
T ss_pred HHHHhccc---CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC-c-CC
Confidence 34455544 4678999999999999999999987 69999999999999987765443 35899999998887 5 46
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+||+|++..+++++...+ ...+++++.++|||||+++++.+
T Consensus 95 ~fD~I~~~~~~~~~~~~~-----~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKT-----IPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred CcCEEEEecchhhCCHHH-----HHHHHHHHHHHcCCCcEEEEEEE
Confidence 799999999998875432 78999999999999999766543
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=99.58 E-value=2.1e-14 Score=157.97 Aligned_cols=107 Identities=20% Similarity=0.366 Sum_probs=94.5
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..|++. |. +|+|+|+|+.+++.++++....+ .+++|+++|+.+++ +++++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEECC
Confidence 46789999999999999999986 44 79999999999999987765433 46999999999999 9999999999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++|+.+ ..+++++++|+|||||++++.++..
T Consensus 195 ~~~h~~d-------~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 195 SGEHMPD-------KRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred chhccCC-------HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 9999865 5789999999999999999988764
No 23
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.58 E-value=1.4e-14 Score=146.60 Aligned_cols=130 Identities=19% Similarity=0.290 Sum_probs=107.1
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CC------CeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeeccCcccccCCC
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GF------HGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQVFMDET 135 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~------~~V~gvDiS~~~I~~a~~~~~~~~----~~v~f~~~D~~~l~~~~~~s 135 (772)
.+++++||++||||.++..+.+. +. .+|+.+||++.|++.++++..+.. ..+.|+++|++++| |++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~s 177 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDDS 177 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCCc
Confidence 67899999999999999888876 22 679999999999999998874422 24899999999999 99999
Q ss_pred ccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCC
Q 004133 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 206 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~ 206 (772)
||.....+.+....+ .++.++|++|||||||+|.|..|++.. .+.+..|...|.+.+-++.+
T Consensus 178 ~D~yTiafGIRN~th-------~~k~l~EAYRVLKpGGrf~cLeFskv~--~~~l~~fy~~ysf~VlpvlG 239 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTH-------IQKALREAYRVLKPGGRFSCLEFSKVE--NEPLKWFYDQYSFDVLPVLG 239 (296)
T ss_pred ceeEEEecceecCCC-------HHHHHHHHHHhcCCCcEEEEEEccccc--cHHHHHHHHhhhhhhhchhh
Confidence 999999999998877 679999999999999999999998643 23445555566666644443
No 24
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.58 E-value=3.5e-14 Score=142.15 Aligned_cols=114 Identities=27% Similarity=0.398 Sum_probs=93.0
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCc
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETF 136 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sf 136 (772)
+.+.+.. .++.++||+|||.|+.+.+|++.|+ +|+++|+|+.+++.+++.+.....+++..+.|+.+.. ++ +.|
T Consensus 22 v~~a~~~---~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~-~~-~~y 95 (192)
T PF03848_consen 22 VLEAVPL---LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD-FP-EEY 95 (192)
T ss_dssp HHHHCTT---S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--T-TTE
T ss_pred HHHHHhh---cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc-cc-CCc
Confidence 4444444 3578999999999999999999999 6999999999999998887777778999999999988 64 789
Q ss_pred cEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 137 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 137 DvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
|+|++..+++++..+. +.++++.+...++|||++++.++.
T Consensus 96 D~I~st~v~~fL~~~~-----~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 96 DFIVSTVVFMFLQREL-----RPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp EEEEEESSGGGS-GGG-----HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CEEEEEEEeccCCHHH-----HHHHHHHHHhhcCCcEEEEEEEec
Confidence 9999999999987654 789999999999999999987653
No 25
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.57 E-value=7.5e-15 Score=150.95 Aligned_cols=140 Identities=26% Similarity=0.377 Sum_probs=103.6
Q ss_pred CHHHHHHHHHhcCCCCccccccc--hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHH
Q 004133 27 SKENWDKFFTIRGIGDSFEWYAE--WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (772)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~--~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I 104 (772)
+.+||+++|++...+ |... .+.+...+.. +.. .++.+||.+|||.|.....|+++|+ +|+|+|+|+.+|
T Consensus 2 ~~~~W~~~w~~~~~~----w~~~~~~p~L~~~~~~-l~~---~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai 72 (218)
T PF05724_consen 2 DPEFWEERWQEGQTP----WDQGEPNPALVEYLDS-LAL---KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAI 72 (218)
T ss_dssp HHHHHHHHHHTT--T----T--TTSTHHHHHHHHH-HTT---STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHH
T ss_pred CHHHHHHHHhcCCCC----CCCCCCCHHHHHHHHh-cCC---CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHH
Confidence 368999999987433 6543 3344444444 222 5678999999999999999999998 699999999999
Q ss_pred HHHHHHhcc-------------CCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhcccc
Q 004133 105 SDMLRRNVR-------------DRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 171 (772)
Q Consensus 105 ~~a~~~~~~-------------~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkp 171 (772)
+.+.+.+.. ...++++.++|+.+++.-..++||+|++.+.|.++.... +.++.+.+.++|+|
T Consensus 73 ~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~-----R~~Ya~~l~~ll~p 147 (218)
T PF05724_consen 73 EQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEM-----RERYAQQLASLLKP 147 (218)
T ss_dssp HHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGG-----HHHHHHHHHHCEEE
T ss_pred HHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHH-----HHHHHHHHHHHhCC
Confidence 998554321 123578999999998722235899999999999997644 89999999999999
Q ss_pred CeEEEEEEc
Q 004133 172 GGKFVCLTL 180 (772)
Q Consensus 172 GG~~ii~~~ 180 (772)
||.++++++
T Consensus 148 ~g~~lLi~l 156 (218)
T PF05724_consen 148 GGRGLLITL 156 (218)
T ss_dssp EEEEEEEEE
T ss_pred CCcEEEEEE
Confidence 999555544
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.56 E-value=2.1e-14 Score=131.49 Aligned_cols=106 Identities=27% Similarity=0.371 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhc--cCCCCcEEEEeec-cCcccccCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDM-TSMQVFMDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~--~~~~~v~f~~~D~-~~l~~~~~~sfDvVi~~~ 143 (772)
|+.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++.. ....+++|+++|+ .... ..+.||+|++.+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD--FLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT--TSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc--cCCCCCEEEECC
Confidence 5789999999999999999993 34479999999999999998883 3456899999999 3333 346799999999
Q ss_pred -cccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 144 -GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 144 -~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+++++...+ ...++++.+.+.|+|||++++.+
T Consensus 79 ~~~~~~~~~~----~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLD----ERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHH----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Cccccccchh----HHHHHHHHHHHhcCCCcEEEEEE
Confidence 566454321 26889999999999999999875
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.54 E-value=5.2e-14 Score=142.76 Aligned_cols=114 Identities=19% Similarity=0.301 Sum_probs=93.4
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCC
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDET 135 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~s 135 (772)
.+...+.. .++.+|||+|||+|.++..+++.|+ +|+++|+|+.|++.++++....+.++.+.++|+...+ + +++
T Consensus 21 ~l~~~~~~---~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~-~~~ 94 (195)
T TIGR00477 21 AVREAVKT---VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA-L-NED 94 (195)
T ss_pred HHHHHhcc---CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc-c-cCC
Confidence 34555554 3568999999999999999999987 6999999999999998776555556888889987766 4 368
Q ss_pred ccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
||+|++..+++++..+. ...++++++++|||||+++++.+
T Consensus 95 fD~I~~~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGR-----VPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CCEEEEecccccCCHHH-----HHHHHHHHHHHhCCCcEEEEEEe
Confidence 99999999998875432 67999999999999999777654
No 28
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.53 E-value=4.1e-14 Score=140.08 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHhcCCCCcc--ccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHH
Q 004133 26 TSKENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVV 103 (772)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~--eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~ 103 (772)
.+.++|++.+.+. ++-.| .||.... ....+...+.. ..-.++||+|||+|.++..|+.+. ..++++|+|+.+
T Consensus 4 ~~~~~l~~~la~~-DPW~~~~~~YE~~K-~~~~l~aaLp~---~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~A 77 (201)
T PF05401_consen 4 DNYQLLNRELAND-DPWGFETSWYERRK-YRATLLAALPR---RRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRA 77 (201)
T ss_dssp SHHHHHHHHHTSS-SGGGTTT-HHHHHH-HHHHHHHHHTT---SSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHH
T ss_pred cHHHHHHHHhCCC-CCCCCCCCHHHHHH-HHHHHHHhcCc---cccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHH
Confidence 4678999998876 23222 1444311 11223333543 355799999999999999999984 579999999999
Q ss_pred HHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 104 ISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 104 I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
|+.|+++.. ..++++|.++|+.+.. +.+.||+|+...+++++.+.++ +..++..+...|+|||.+++.++..
T Consensus 78 l~~Ar~Rl~-~~~~V~~~~~dvp~~~--P~~~FDLIV~SEVlYYL~~~~~----L~~~l~~l~~~L~pgG~LV~g~~rd 149 (201)
T PF05401_consen 78 LARARERLA-GLPHVEWIQADVPEFW--PEGRFDLIVLSEVLYYLDDAED----LRAALDRLVAALAPGGHLVFGHARD 149 (201)
T ss_dssp HHHHHHHTT-T-SSEEEEES-TTT-----SS-EEEEEEES-GGGSSSHHH----HHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred HHHHHHhcC-CCCCeEEEECcCCCCC--CCCCeeEEEEehHhHcCCCHHH----HHHHHHHHHHHhCCCCEEEEEEecC
Confidence 999999985 4579999999998864 8899999999999999975322 7889999999999999999988754
No 29
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.51 E-value=2.4e-14 Score=145.41 Aligned_cols=106 Identities=25% Similarity=0.394 Sum_probs=97.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||-|.+++.|++.|+ +|||+|+|+.+|+.|+..+......+.|.+..+.++. ...++||+|++..++.|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHHHc
Confidence 789999999999999999999996 7999999999999999888777778889999999987 55689999999999999
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+.++ ..+++.+.+++||||.+++.+...
T Consensus 137 v~dp-------~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 137 VPDP-------ESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred cCCH-------HHHHHHHHHHcCCCcEEEEecccc
Confidence 9885 479999999999999999999874
No 30
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.51 E-value=2.7e-13 Score=140.89 Aligned_cols=126 Identities=23% Similarity=0.307 Sum_probs=101.7
Q ss_pred cchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEee
Q 004133 48 AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMD 124 (772)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D 124 (772)
.........+...+.. .++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.++++.... ..+++++++|
T Consensus 28 ~~~~~~~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d 104 (231)
T TIGR02752 28 QRHKKWRKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGN 104 (231)
T ss_pred CchHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEec
Confidence 3333344445556654 56789999999999999999876 3 247999999999999998876433 2478999999
Q ss_pred ccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 125 MTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 125 ~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+.+++ +++++||+|++..+++++.+ ..++++++.++|+|||++++.+..++.
T Consensus 105 ~~~~~-~~~~~fD~V~~~~~l~~~~~-------~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 105 AMELP-FDDNSFDYVTIGFGLRNVPD-------YMQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred hhcCC-CCCCCccEEEEecccccCCC-------HHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 99988 88899999999998888765 568999999999999999998876544
No 31
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.49 E-value=4.8e-14 Score=127.32 Aligned_cols=96 Identities=30% Similarity=0.477 Sum_probs=81.1
Q ss_pred EEEEcCCCchhHHHHHHc---CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccc-cc
Q 004133 72 ILVPGCGNSRLSEHLYDA---GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGG-LD 146 (772)
Q Consensus 72 ILDlGCG~G~ls~~La~~---g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~-l~ 146 (772)
|||+|||+|..+..+++. +. .+++|+|+|+.|++.++++....+.+++|+++|+.+++ +.+++||+|++.+. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~-~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP-FSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH-HHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc-ccCCCeeEEEEcCCccC
Confidence 799999999999999886 32 57999999999999999888766679999999999999 88999999999554 88
Q ss_pred ccccCccchHHHHHHHHHHHhccccCe
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGG 173 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG 173 (772)
++.+++ +.++++++.++|||||
T Consensus 80 ~~~~~~-----~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEE-----LEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHH-----HHHHHHHHHHTEEEEE
T ss_pred CCCHHH-----HHHHHHHHHHHhCCCC
Confidence 875543 8999999999999998
No 32
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.49 E-value=2.6e-13 Score=143.99 Aligned_cols=109 Identities=17% Similarity=0.296 Sum_probs=93.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|..+..++.. +. +|+|+|+|+.|++.++++... ..++.|.++|+.+.+ +++++||+|++..++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~-~~~~~FD~V~s~~~l 127 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKD-FPENTFDMIYSRDAI 127 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCC-CCCCCeEEEEEhhhH
Confidence 67899999999999999988765 44 799999999999999887643 457999999999988 889999999998888
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
.|+...+ ...++++++++|||||++++..+...
T Consensus 128 ~h~~~~d-----~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 128 LHLSYAD-----KKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred HhCCHHH-----HHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 7764322 67999999999999999999887543
No 33
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=3e-13 Score=142.52 Aligned_cols=115 Identities=20% Similarity=0.347 Sum_probs=96.5
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCC
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDE 134 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~ 134 (772)
..+.+.+.. .+..+|||+|||+|.++..+...|. +|+++|+|+.|++.++++. ....|+++|+.+++ ++++
T Consensus 32 ~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~----~~~~~~~~d~~~~~-~~~~ 102 (251)
T PRK10258 32 DALLAMLPQ---RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKD----AADHYLAGDIESLP-LATA 102 (251)
T ss_pred HHHHHhcCc---cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC----CCCCEEEcCcccCc-CCCC
Confidence 334444433 3568999999999999999988775 7999999999999987664 23578999999999 8899
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
+||+|++..+++++.+ ...++.++.++|+|||.+++.++....+
T Consensus 103 ~fD~V~s~~~l~~~~d-------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 146 (251)
T PRK10258 103 TFDLAWSNLAVQWCGN-------LSTALRELYRVVRPGGVVAFTTLVQGSL 146 (251)
T ss_pred cEEEEEECchhhhcCC-------HHHHHHHHHHHcCCCeEEEEEeCCCCch
Confidence 9999999999988765 5689999999999999999999887654
No 34
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.48 E-value=1.4e-13 Score=149.27 Aligned_cols=106 Identities=19% Similarity=0.223 Sum_probs=93.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..|+..|. +|+|||+|+.+++.++++..... .+++|+++|+.+++ +.+++||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hccCCCCEEEEhhHH
Confidence 567999999999999999998876 69999999999999987653322 37999999999998 788899999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+|+.+ ...+++++.++|||||.+++.++..
T Consensus 209 eHv~d-------~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 209 EHVAN-------PAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred HhcCC-------HHHHHHHHHHHcCCCcEEEEEECCc
Confidence 99987 3689999999999999999998764
No 35
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=99.48 E-value=3e-13 Score=142.41 Aligned_cols=155 Identities=20% Similarity=0.246 Sum_probs=118.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-------CCCCCCCeEEEEccHHHHHHhhcccCc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-------GFTQDKSLKVHITDGIKFVREMKSSSA 613 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-------g~~~~~rl~v~i~Dg~~~l~~~~~~~~ 613 (772)
+...+|||+|.|.|...+-|.+.....+|+-||+||.|+++|++.- |--.|+|++|+++||.+|++..+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~---- 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA---- 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc----
Confidence 5668999999999999888888744679999999999999998543 22268999999999999999976
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 614 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.+||+||+|+-+++..+ -..+++.+|+..++++|+++|++|+.--+.
T Consensus 364 ----------------------------~~fD~vIVDl~DP~tps-----~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 364 ----------------------------DMFDVVIVDLPDPSTPS-----IGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred ----------------------------ccccEEEEeCCCCCCcc-----hhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 58999999995553211 467899999999999999999999987554
Q ss_pred --ChhHHHHHHHHHHHhccceEEEe--ecC-CceEEEEEecCCC
Q 004133 694 --SQATKDMVISRMKMVFNHLFCLQ--LEE-DVNLVLFGLSSES 732 (772)
Q Consensus 694 --~~~~~~~v~~~l~~vF~~v~~~~--~~~-~~N~vl~a~~~~~ 732 (772)
.+..+=.+.+++++.=-.++-+. ++. +..-.++|.+.+.
T Consensus 411 y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~~~~ 454 (508)
T COG4262 411 YFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAPGDA 454 (508)
T ss_pred ccCCceeeeehhHHHhCcceeeeeEEecCcccccceeecccccC
Confidence 23333446777777654433332 333 3345777777664
No 36
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.46 E-value=3.7e-13 Score=130.79 Aligned_cols=107 Identities=26% Similarity=0.383 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHH-cC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccc-ccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYD-AG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQV-FMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~-~g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~-~~~~sfDvVi~~ 142 (772)
+.+.+|||+|||+|.++..+++ .+ ..+++|+|+|+.||+.|++++.... .+++|.++|+.+++. ++ +.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 3578999999999999999994 32 3579999999999999998765443 479999999999762 12 799999999
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++++++.+ ...+++++.++|++||++++..+.
T Consensus 81 ~~l~~~~~-------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD-------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH-------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC-------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99988866 468999999999999999998877
No 37
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.46 E-value=4.2e-13 Score=143.24 Aligned_cols=147 Identities=22% Similarity=0.342 Sum_probs=106.5
Q ss_pred hcccccCCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C---CCe
Q 004133 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G---FHG 93 (772)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g---~~~ 93 (772)
+|..........||.+.+..+ ..|.+.+.|..+...+...+......+..+|||+|||+|.++..+++. + ...
T Consensus 38 l~~~~~~~~~~~d~~~~~~ar---~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~ 114 (272)
T PRK11088 38 LPVQHKRSKDPGDNKEMMQAR---RAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQ 114 (272)
T ss_pred ccccccCCCCCCcCHHHHHHH---HHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCe
Confidence 454334444556777777655 334444555556655545443211134578999999999999988775 1 236
Q ss_pred EEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCe
Q 004133 94 ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 173 (772)
Q Consensus 94 V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG 173 (772)
++|+|+|+.|++.|+++. +++.|.++|+.+++ +++++||+|++... + ..+++++|+|||||
T Consensus 115 v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~lp-~~~~sfD~I~~~~~------~--------~~~~e~~rvLkpgG 175 (272)
T PRK11088 115 LFGLDISKVAIKYAAKRY----PQVTFCVASSHRLP-FADQSLDAIIRIYA------P--------CKAEELARVVKPGG 175 (272)
T ss_pred EEEECCCHHHHHHHHHhC----CCCeEEEeecccCC-CcCCceeEEEEecC------C--------CCHHHHHhhccCCC
Confidence 999999999999886553 57899999999999 99999999997432 1 24578999999999
Q ss_pred EEEEEEcCchhhh
Q 004133 174 KFVCLTLAESHVL 186 (772)
Q Consensus 174 ~~ii~~~~~~~~~ 186 (772)
++++++.+..|..
T Consensus 176 ~li~~~p~~~~l~ 188 (272)
T PRK11088 176 IVITVTPGPRHLF 188 (272)
T ss_pred EEEEEeCCCcchH
Confidence 9999988876653
No 38
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=5.6e-13 Score=140.90 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=93.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..+++.|. +|+++|+|+.|++.|+++....+ .+++++++|+.+++.+.+++||+|++..++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 467999999999999999999976 69999999999999988775443 468999999988743567899999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+++.+ ...+++++.++|||||++++..+....
T Consensus 123 ~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~n~~~ 154 (255)
T PRK11036 123 EWVAD-------PKSVLQTLWSVLRPGGALSLMFYNANG 154 (255)
T ss_pred HhhCC-------HHHHHHHHHHHcCCCeEEEEEEECccH
Confidence 99866 358999999999999999988776543
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=6.1e-13 Score=143.06 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=90.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||+|.++..++..|+ +|+|+|+|+.+++.++++....+.++++.+.|+.... + +++||+|++..++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-I-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-c-cCCccEEEEcchhhh
Confidence 346999999999999999999987 6999999999999998887666668999999998876 4 689999999999998
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+..+. ...+++++.++|+|||+++++.
T Consensus 197 l~~~~-----~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 197 LNRER-----IPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCHHH-----HHHHHHHHHHhcCCCcEEEEEE
Confidence 75432 7899999999999999977654
No 40
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.44 E-value=8.1e-13 Score=144.07 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=93.3
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHH--hccCCCCcEEEEeeccCcccccC
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR--NVRDRSDMRWRVMDMTSMQVFMD 133 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~--~~~~~~~v~f~~~D~~~l~~~~~ 133 (772)
.+..++.. .++.+|||+|||+|.++..++..|...|+|+|+|+.++.+++.. ......++.|+.+|+.+++ + +
T Consensus 113 ~l~~~l~~---l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-~-~ 187 (322)
T PRK15068 113 RVLPHLSP---LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-A-L 187 (322)
T ss_pred HHHHhhCC---CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-C-c
Confidence 34455543 35789999999999999999999877799999999999865433 2222457999999999998 6 7
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++||+|++.++++|..+ ...+|++++++|+|||.+++.++
T Consensus 188 ~~FD~V~s~~vl~H~~d-------p~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRS-------PLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CCcCEEEECChhhccCC-------HHHHHHHHHHhcCCCcEEEEEEE
Confidence 89999999999999865 46899999999999999998764
No 41
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.42 E-value=1.8e-12 Score=149.19 Aligned_cols=108 Identities=22% Similarity=0.337 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++......+++|.++|+.+++ +++++||+|++.+++.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-YPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-CCCCCEEEEEECCccc
Confidence 467899999999999999888763237999999999999998776544557999999999988 8889999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
|+.+ ...++++++|+|||||++++.++..
T Consensus 344 h~~d-------~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 344 HIQD-------KPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred ccCC-------HHHHHHHHHHHcCCCeEEEEEEecc
Confidence 9976 4689999999999999999988754
No 42
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.42 E-value=1.2e-12 Score=133.74 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=85.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..|... +..+++|+|+|+.|++.|+++. +++.+.++|+.+ + +++++||+|++.+++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~-~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-P-FKDNFFDLVLTKGVL 115 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-C-CCCCCEEEEEECChh
Confidence 35679999999999999999886 4457999999999999997654 467899999988 7 889999999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+|+.++ ...++++++.|++ ++++++..+-
T Consensus 116 ~hl~p~-----~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 116 IHINPD-----NLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred hhCCHH-----HHHHHHHHHHhhc--CcEEEEEEee
Confidence 998532 2789999999998 4566666543
No 43
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=1.9e-12 Score=136.30 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~---g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~ 142 (772)
++.+|||+|||+|.++..++.. +..+++|+|+|+.|++.++++..... .+++++++|+.+++ ++ .+|+|++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~D~vv~~ 132 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-IE--NASMVVLN 132 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-CC--CCCEEehh
Confidence 5789999999999999888762 23479999999999999998875432 37999999999887 54 59999999
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.+++++..++ ...++++++++|||||.+++.+
T Consensus 133 ~~l~~l~~~~-----~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 133 FTLQFLEPSE-----RQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hHHHhCCHHH-----HHHHHHHHHHhcCCCCEEEEEE
Confidence 9999886432 6789999999999999999986
No 44
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.40 E-value=2e-12 Score=125.70 Aligned_cols=111 Identities=30% Similarity=0.480 Sum_probs=92.0
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFM 132 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~ 132 (772)
+...+..+... ..++.+|||+|||+|.++..+++.|+ +++|+|+|+.+++. ..+.+...+..... .+
T Consensus 9 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~-~~ 75 (161)
T PF13489_consen 9 YADLLERLLPR--LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RNVVFDNFDAQDPP-FP 75 (161)
T ss_dssp HHHHHHHHHTC--TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TTSEEEEEECHTHH-CH
T ss_pred HHHHHHHHhcc--cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hhhhhhhhhhhhhh-cc
Confidence 44445555532 14688999999999999999988888 79999999999876 35566777666666 78
Q ss_pred CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 133 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 133 ~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+++||+|++..+|+|+.+ ...+++++.++|||||++++.+....
T Consensus 76 ~~~fD~i~~~~~l~~~~d-------~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLPD-------PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSSEEEEEEESSGGGSSH-------HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ccchhhHhhHHHHhhccc-------HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 899999999999999986 57999999999999999999987653
No 45
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.40 E-value=2.6e-12 Score=135.77 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..++... ..+|+|+|+|+.|++.++++ +++|+++|+.+++ ++++||+|++..++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~--~~~~fD~v~~~~~l 99 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWK--PKPDTDVVVSNAAL 99 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCC--CCCCceEEEEehhh
Confidence 467899999999999999998872 24799999999999988642 5889999998875 56799999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+++.+ ...++++++++|||||++++...
T Consensus 100 ~~~~d-------~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 100 QWVPE-------HADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hhCCC-------HHHHHHHHHHhCCCCcEEEEEcC
Confidence 99865 46899999999999999988754
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.39 E-value=6e-12 Score=126.57 Aligned_cols=139 Identities=17% Similarity=0.064 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|..+..++.. +..+|+++|+|+.|++.++++...... +++++++|+.+++ . .++||+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-~-~~~fDlV~~~~~- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-Q-EEKFDVVTSRAV- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-C-CCCccEEEEccc-
Confidence 4789999999999999988864 335799999999999999887755443 5999999999987 5 779999998642
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccc-cCCcEEEEEEcCCCCCCCCCcceEEEEEEe
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADK 223 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K 223 (772)
.+ ...+++.++++|||||++++..... ....+.... ..+|.+...-..+.+ +..-++++.+++|
T Consensus 122 ---~~-------~~~~l~~~~~~LkpGG~lv~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 186 (187)
T PRK00107 122 ---AS-------LSDLVELCLPLLKPGGRFLALKGRD--PEEEIAELPKALGGKVEEVIELTLP--GLDGERHLVIIRK 186 (187)
T ss_pred ---cC-------HHHHHHHHHHhcCCCeEEEEEeCCC--hHHHHHHHHHhcCceEeeeEEEecC--CCCCcEEEEEEec
Confidence 12 5689999999999999999886442 222222211 127765443333222 2223566777665
No 47
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.39 E-value=2.8e-12 Score=138.69 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHH--HhccCCCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~--~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..++..|...|+|+|+|+.|+.+++. +......++.+..+++.+++ . ..+||+|++.++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~-~~~FD~V~s~gv 197 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-E-LYAFDTVFSMGV 197 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-C-CCCcCEEEEcch
Confidence 4678999999999999999988887779999999999986532 22233457889999999988 4 458999999999
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++|+.+ ...+|++++++|||||.+++.++.
T Consensus 198 L~H~~d-------p~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 198 LYHRKS-------PLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred hhccCC-------HHHHHHHHHHhcCCCCEEEEEEEE
Confidence 999866 468999999999999999998753
No 48
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=5e-12 Score=133.74 Aligned_cols=100 Identities=23% Similarity=0.354 Sum_probs=86.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.++++. +++.|..+|+.++. ++++||+|++..++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~--~~~~fD~v~~~~~l 103 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQ--PPQALDLIFANASL 103 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhccC--CCCCccEEEEccCh
Confidence 56789999999999999999886 3457999999999999997664 46899999998775 45699999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+++.+ ...++++++++|||||++++..
T Consensus 104 ~~~~d-------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 104 QWLPD-------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hhCCC-------HHHHHHHHHHhcCCCcEEEEEC
Confidence 99865 4689999999999999998864
No 49
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.38 E-value=1.1e-09 Score=131.50 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=83.6
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC--CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~--~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+||.+|+|+|+++..+... +..+|++||+++..+++|++.+.+. ...+++++.+|..+|++...
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~----------- 606 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAR----------- 606 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcC-----------
Confidence 479999999999999988876 3347999999999999999998432 22589999999999987642
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCc-CCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC-PAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~-Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
.+||+||+|--.-.....+.- ....=.-.+++..+.++|+|||++++-...
T Consensus 607 ---------------------~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 607 ---------------------EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred ---------------------CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 569999997432111000000 000001245788888999999999875433
No 50
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=99.37 E-value=1e-12 Score=135.70 Aligned_cols=148 Identities=23% Similarity=0.343 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-----CCCCC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQD 591 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----g~~~~ 591 (772)
+.| +-|++.+++..+ ++|+++||||.|.|...+-...|-..-.|+.+|||..|+++.++|+ |+ ++
T Consensus 105 ~~Y-qemi~~l~l~s~--------~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy-~~ 174 (337)
T KOG1562|consen 105 FAY-QEMIAHLALCSH--------PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY-EG 174 (337)
T ss_pred ccc-eeeeeccccccC--------CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc-CC
Confidence 445 468888888765 7899999999999988776666633458999999999999999999 65 78
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
+++.+++|||..|++..+ ...||+||+|.+ |+.+ |...++...
T Consensus 175 ~~v~l~iGDG~~fl~~~~-------------------------------~~~~dVii~dss--dpvg----pa~~lf~~~ 217 (337)
T KOG1562|consen 175 KKVKLLIGDGFLFLEDLK-------------------------------ENPFDVIITDSS--DPVG----PACALFQKP 217 (337)
T ss_pred CceEEEeccHHHHHHHhc-------------------------------cCCceEEEEecC--Cccc----hHHHHHHHH
Confidence 999999999999999986 367999999664 4433 788899999
Q ss_pred HHHHHHHccCCCcEEEEEecCC--ChhHHHHHHHHHHHhccc
Q 004133 672 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNH 711 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~ 711 (772)
+++.+++.|+++|+++..--|- ...+.+...+..+.+|+.
T Consensus 218 ~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~ 259 (337)
T KOG1562|consen 218 YFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDL 259 (337)
T ss_pred HHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCc
Confidence 9999999999999998653221 233445556666778883
No 51
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.37 E-value=3.7e-12 Score=128.60 Aligned_cols=150 Identities=21% Similarity=0.285 Sum_probs=112.8
Q ss_pred CHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-C--CeEEEEeCCHHH
Q 004133 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-F--HGITNVDFSKVV 103 (772)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~--~~V~gvDiS~~~ 103 (772)
...|||.+|.... ..| +.+..-+...+..++.... ++..+|||+|||.|.....+.+.. . -.|+++|+|+.+
T Consensus 35 ~~k~wD~fy~~~~--~rF--fkdR~wL~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~A 109 (264)
T KOG2361|consen 35 ASKYWDTFYKIHE--NRF--FKDRNWLLREFPELLPVDE-KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRA 109 (264)
T ss_pred hhhhhhhhhhhcc--ccc--cchhHHHHHhhHHhhCccc-cChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHH
Confidence 4679999998774 222 4444444444555554311 223389999999999998887752 1 359999999999
Q ss_pred HHHHHHHhccCCCCcEEEEeeccCcc---cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 104 ISDMLRRNVRDRSDMRWRVMDMTSMQ---VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 104 I~~a~~~~~~~~~~v~f~~~D~~~l~---~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
|+..++.......++.-.+.|++... ....+++|+|++..+|.++.++. ...++++++++|||||.+++-+|
T Consensus 110 i~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek-----~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 110 IELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK-----MQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred HHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH-----HHHHHHHHHHHhCCCcEEEEeec
Confidence 99887665444456777777877632 25678999999999999997644 88999999999999999999999
Q ss_pred Cchhhh
Q 004133 181 AESHVL 186 (772)
Q Consensus 181 ~~~~~~ 186 (772)
+...+.
T Consensus 185 g~~Dla 190 (264)
T KOG2361|consen 185 GRYDLA 190 (264)
T ss_pred ccchHH
Confidence 977654
No 52
>PRK05785 hypothetical protein; Provisional
Probab=99.37 E-value=3.8e-12 Score=132.09 Aligned_cols=99 Identities=18% Similarity=0.267 Sum_probs=82.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
++.+|||+|||||.++..+++....+|+|+|+|+.|++.++++. .++++|+.++| +++++||+|++..++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~lp-~~d~sfD~v~~~~~l~~ 122 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFEALP-FRDKSFDVVMSSFALHA 122 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechhhCC-CCCCCEEEEEecChhhc
Confidence 46899999999999999998873237999999999999886542 46899999999 99999999999999998
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+.+ ..+++++++|+|||. ++++.++.+
T Consensus 123 ~~d-------~~~~l~e~~RvLkp~--~~ile~~~p 149 (226)
T PRK05785 123 SDN-------IEKVIAEFTRVSRKQ--VGFIAMGKP 149 (226)
T ss_pred cCC-------HHHHHHHHHHHhcCc--eEEEEeCCC
Confidence 765 578999999999994 334444443
No 53
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.37 E-value=2.9e-12 Score=126.14 Aligned_cols=109 Identities=18% Similarity=0.272 Sum_probs=92.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcE-EEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMR-WRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~-f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.....|||+|||||..-.+.-.....+||++|.++.|-+.+.+.+.+.. +++. |++++.++++.+++++||+|++..+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 3456789999999999876654444479999999999999988876554 4676 9999999999889999999999999
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
|+...+ ..+.|+++.|+|||||+++++....
T Consensus 155 LCSve~-------~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 155 LCSVED-------PVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EeccCC-------HHHHHHHHHHhcCCCcEEEEEeccc
Confidence 998876 4699999999999999999987543
No 54
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=2.8e-12 Score=134.85 Aligned_cols=117 Identities=20% Similarity=0.319 Sum_probs=99.6
Q ss_pred HHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCC
Q 004133 58 ISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDE 134 (772)
Q Consensus 58 ~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~ 134 (772)
...++++...|+++|||||||-|.++.++++. |. +|+|+++|+++.+.++++....+. ++++...|..++. +
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----e 136 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----E 136 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----c
Confidence 33344444589999999999999999999998 55 799999999999999997765544 5889999988876 4
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
.||.|++.++++|+-... ...+|+.++++|+|||++++.++..++
T Consensus 137 ~fDrIvSvgmfEhvg~~~-----~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 137 PFDRIVSVGMFEHVGKEN-----YDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred ccceeeehhhHHHhCccc-----HHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 499999999999997643 789999999999999999999988765
No 55
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.36 E-value=6.5e-12 Score=131.46 Aligned_cols=105 Identities=12% Similarity=0.110 Sum_probs=88.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~---g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~ 142 (772)
++.+|||+|||+|.++..+++. +..+++|+|+|+.|++.|+++.... ..+++++++|+.+++ ++ .+|+|++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~d~v~~~ 129 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-IK--NASMVILN 129 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CC--CCCEEeee
Confidence 6789999999999999988875 2347999999999999998876432 236899999999887 54 58999999
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.+++++.+.+ ...++++++++|||||++++.+.
T Consensus 130 ~~l~~~~~~~-----~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPED-----RIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHHH-----HHHHHHHHHHhcCCCeEEEEeec
Confidence 9999885432 57899999999999999998864
No 56
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.35 E-value=3.6e-12 Score=138.87 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=89.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.|++.++++.. ..+++++.+|+.+++ +++++||+|++.+++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp-~~~~sFDvVIs~~~L 188 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLP-FPTDYADRYVSAGSI 188 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCC-CCCCceeEEEEcChh
Confidence 35789999999999999888775 34579999999999999987653 347899999999998 889999999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+++.+ ...++++++++|||||+++++..
T Consensus 189 ~~~~d-------~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 189 EYWPD-------PQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred hhCCC-------HHHHHHHHHHhcCCCcEEEEEEe
Confidence 98765 35799999999999999988653
No 57
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.35 E-value=7.2e-12 Score=130.04 Aligned_cols=107 Identities=23% Similarity=0.341 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.+.+|||+|||+|.++..+++.+. .+++++|+|+.+++.++++.. +++.++++|+.+.+ +++++||+|++..+++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~-~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLP-LEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCC-CCCCceeEEEEhhhhh
Confidence 347999999999999999988753 458999999999998877663 47899999999998 8889999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
++.+ ...+++++.++|+|||++++.++....+
T Consensus 110 ~~~~-------~~~~l~~~~~~L~~~G~l~~~~~~~~~~ 141 (240)
T TIGR02072 110 WCDD-------LSQALSELARVLKPGGLLAFSTFGPGTL 141 (240)
T ss_pred hccC-------HHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence 8865 4689999999999999999998876554
No 58
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.35 E-value=7.5e-12 Score=133.15 Aligned_cols=118 Identities=21% Similarity=0.288 Sum_probs=90.2
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCccccc
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFM 132 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~ 132 (772)
.+..++++...+|+.+|||||||.|.++..+++. |. +|+|+.+|+...+.++++....+ ..+++.+.|..+++
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 3445556656689999999999999999999998 86 69999999999999998886555 36899999998877
Q ss_pred CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 133 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 133 ~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
.+||.|++.+++.|+.... +..+|+.+.++|||||++++.++...
T Consensus 126 -~~fD~IvSi~~~Ehvg~~~-----~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 126 -GKFDRIVSIEMFEHVGRKN-----YPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp --S-SEEEEESEGGGTCGGG-----HHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred -CCCCEEEEEechhhcChhH-----HHHHHHHHHHhcCCCcEEEEEecccc
Confidence 3999999999999995433 78999999999999999997765543
No 59
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.33 E-value=1.8e-12 Score=132.54 Aligned_cols=101 Identities=24% Similarity=0.408 Sum_probs=86.8
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--------CcEEEEeeccCcccccCCCccEEE
Q 004133 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--------DMRWRVMDMTSMQVFMDETFDVIL 140 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--------~v~f~~~D~~~l~~~~~~sfDvVi 140 (772)
+.+|||+|||+|.+++.|++.|. +|+|||.++.||+.|+... ...| +++|.+.|++.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~-~~dP~~~~~~~y~l~~~~~~~E~~~----~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHK-KMDPVLEGAIAYRLEYEDTDVEGLT----GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhh-hcCchhccccceeeehhhcchhhcc----cccceee
Confidence 47899999999999999999996 6999999999999998774 2222 3667778887766 4599999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+..+++|+.++ ..+++.+.++|||||++++.+...
T Consensus 164 csevleHV~dp-------~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 164 CSEVLEHVKDP-------QEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred eHHHHHHHhCH-------HHHHHHHHHHhCCCCceEeeehhh
Confidence 99999999874 689999999999999999998764
No 60
>PRK08317 hypothetical protein; Provisional
Probab=99.32 E-value=2e-11 Score=126.59 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=97.2
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF 131 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~ 131 (772)
...+...+.. .++.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++......++++.+.|+.+++ +
T Consensus 8 ~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~ 83 (241)
T PRK08317 8 RARTFELLAV---QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-F 83 (241)
T ss_pred HHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC-C
Confidence 3344455544 578899999999999999998862 357999999999999998774344568999999999988 8
Q ss_pred cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 132 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++++||+|++..+++++.+ ...+++++.++|||||.+++...
T Consensus 84 ~~~~~D~v~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLED-------PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCceEEEEechhhccCC-------HHHHHHHHHHHhcCCcEEEEEec
Confidence 8899999999999999876 46899999999999999998764
No 61
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.32 E-value=2e-11 Score=122.34 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..++..+ ..+|+++|+|+.|++.++++....+ .+++++++|+.++. .+++||+|++.. +
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--HEEQFDVITSRA-L 118 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc--ccCCccEEEehh-h
Confidence 46899999999999999887663 3579999999999998877654433 36999999999875 467999999865 3
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+. ...+++.+.++|+|||++++..-
T Consensus 119 ~~----------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 AS----------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred hC----------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 22 45788999999999999998753
No 62
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.32 E-value=1.2e-11 Score=132.01 Aligned_cols=107 Identities=18% Similarity=0.302 Sum_probs=90.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|..+..++.. |. .+|+++|+|+.+++.++++.... ..+++|.++|+.+++ +++++||+|++..
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-VADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-CCCCceeEEEEcC
Confidence 57899999999999988777664 43 36999999999999998876433 247899999999998 8889999999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++++..+ ...++++++++|||||++++.++.
T Consensus 155 v~~~~~d-------~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 155 VINLSPD-------KERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred cccCCCC-------HHHHHHHHHHHcCCCcEEEEEEee
Confidence 9987654 468999999999999999998754
No 63
>PRK06922 hypothetical protein; Provisional
Probab=99.31 E-value=1.3e-11 Score=142.30 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=90.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-cccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-VFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|+++....+.++.++++|+.+++ .+++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 5789999999999999888875 3357999999999999998876544557888999998875 2678899999999988
Q ss_pred ccccc----Cc--cchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 146 DALME----PE--LGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 146 ~~l~~----~~--~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+++.. .. .......+++++++++|||||++++.+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 86532 00 0122378999999999999999999863
No 64
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.30 E-value=3.2e-11 Score=125.32 Aligned_cols=108 Identities=24% Similarity=0.363 Sum_probs=92.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~ 142 (772)
.++.+|||+|||+|.++..++..+ ..+++++|+++.+++.++++.... ..++.+..+|+.+++ ++.++||+|++.
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~ 128 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIA 128 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEe
Confidence 467899999999999999998875 368999999999999998876442 346899999999988 778899999999
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
.+++++.+ ...+++++.++|+|||+++++++..
T Consensus 129 ~~l~~~~~-------~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 129 FGLRNVPD-------IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cccccCCC-------HHHHHHHHHHhccCCcEEEEEEecC
Confidence 88887765 5689999999999999999887654
No 65
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.29 E-value=1.5e-11 Score=130.49 Aligned_cols=106 Identities=18% Similarity=0.173 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCCch----hHHHHHHcC------CCeEEEEeCCHHHHHHHHHHhcc------------------------
Q 004133 68 PPPQILVPGCGNSR----LSEHLYDAG------FHGITNVDFSKVVISDMLRRNVR------------------------ 113 (772)
Q Consensus 68 ~~~~ILDlGCG~G~----ls~~La~~g------~~~V~gvDiS~~~I~~a~~~~~~------------------------ 113 (772)
++.+|+|+|||+|. ++..+++.+ ..+|+|+|+|+.||+.|++..-.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 444454431 13699999999999999864210
Q ss_pred ----CCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 114 ----DRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 114 ----~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
-...++|.++|+.+.+ ++.++||+|++.++++++..+. ..+++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf~~~~-----~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYFDEPT-----QRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhCCHHH-----HHHHHHHHHHHhCCCeEEEEEC
Confidence 0136899999999988 7789999999999999986533 6799999999999999999864
No 66
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.29 E-value=4.7e-11 Score=119.36 Aligned_cols=113 Identities=20% Similarity=0.282 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++......++++.++|+.+.. .++||+|+++..++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPYL 93 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCCC
Confidence 3567999999999999999999876 7999999999999998887655567889999987754 35899999988776
Q ss_pred ccccCc--------------cchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 147 ALMEPE--------------LGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 147 ~l~~~~--------------~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
...... .+......+++++.++|||||+++++.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 554321 1112357899999999999999998875543
No 67
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.29 E-value=8.7e-13 Score=118.43 Aligned_cols=96 Identities=26% Similarity=0.363 Sum_probs=62.5
Q ss_pred EEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccc-cCCCccEEEecccccccc
Q 004133 73 LVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVF-MDETFDVILDKGGLDALM 149 (772)
Q Consensus 73 LDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~-~~~sfDvVi~~~~l~~l~ 149 (772)
||+|||+|.++..+.+. ...+++++|+|+.|++.++++..... ........+..+.... ..++||+|++..+++|+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999887 44579999999999988877775543 2344444444443201 235999999999999993
Q ss_pred cCccchHHHHHHHHHHHhccccCeEE
Q 004133 150 EPELGHKLGNQYLSEVKRLLKSGGKF 175 (772)
Q Consensus 150 ~~~~~~~~~~~~l~ei~rvLkpGG~~ 175 (772)
+ ...+++.++++|||||+|
T Consensus 81 ~-------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D-------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------HHHHHHHHTTT-TSS-EE
T ss_pred h-------HHHHHHHHHHHcCCCCCC
Confidence 3 689999999999999986
No 68
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.28 E-value=6.4e-11 Score=109.98 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=87.0
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSMQV 130 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l~~ 130 (772)
+...+...+.. .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++.... ..++++...|+.+...
T Consensus 7 ~~~~~~~~~~~---~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 7 VRALTLSKLRL---RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh
Confidence 33444455443 45679999999999999999987 3357999999999999998766433 2468899998875321
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
...++||+|+..+.... ..+++++++++|||||++++..+
T Consensus 84 ~~~~~~D~v~~~~~~~~----------~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGGL----------LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hhcCCCCEEEECCcchh----------HHHHHHHHHHHcCCCCEEEEEec
Confidence 34468999998654321 46899999999999999998754
No 69
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.26 E-value=2.8e-09 Score=123.12 Aligned_cols=131 Identities=16% Similarity=0.089 Sum_probs=93.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
..+-+|.||+|.|.....++...|+..+.+||+....+.-|-+...-..-.+++++.+|+..+.....
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~------------ 414 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLP------------ 414 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcC------------
Confidence 34568999999999988999999999999999999877666554311122578898888765544443
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 701 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 701 (772)
+..+|-|.+- =+||..--.-.-..+++++||+.+++.|+|||.+- +.+.+..+.+.+
T Consensus 415 -------------------~~sv~~i~i~--FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~--~~TD~~~y~~~~ 471 (506)
T PRK01544 415 -------------------NNSLDGIYIL--FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV--FASDIENYFYEA 471 (506)
T ss_pred -------------------cccccEEEEE--CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE--EEcCCHHHHHHH
Confidence 3568999883 34442111112345999999999999999999887 445677776665
Q ss_pred HHHHHH
Q 004133 702 ISRMKM 707 (772)
Q Consensus 702 ~~~l~~ 707 (772)
+..+.+
T Consensus 472 ~~~~~~ 477 (506)
T PRK01544 472 IELIQQ 477 (506)
T ss_pred HHHHHh
Confidence 666554
No 70
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.26 E-value=1.1e-10 Score=120.03 Aligned_cols=107 Identities=24% Similarity=0.384 Sum_probs=92.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~--~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..++..+. .+++++|+++.+++.++++.. ...++++..+|+.+++ ++.++||+|++..+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALP-FEDNSFDAVTIAFG 115 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCC-CCCCcEEEEEEeee
Confidence 4678999999999999999988754 379999999999999987764 4457899999999988 77889999999988
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++..+ ...+++++.++|+|||++++.++..
T Consensus 116 ~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 116 LRNVTD-------IQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred eCCccc-------HHHHHHHHHHHcCCCcEEEEEEecC
Confidence 887755 5689999999999999999887643
No 71
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.25 E-value=2.2e-11 Score=124.28 Aligned_cols=132 Identities=16% Similarity=0.131 Sum_probs=93.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeec-cCcc-cccCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM-TSMQ-VFMDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~-~~l~-~~~~~sfDvVi~~~ 143 (772)
++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.++++..... .+++|+++|+ ..++ .+++++||+|+...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5789999999999999999876 34579999999999999988765433 5799999999 6554 25678999999865
Q ss_pred cccccccCcc-chHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccc-cCCcEEE
Q 004133 144 GLDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 200 (772)
Q Consensus 144 ~l~~l~~~~~-~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~ 200 (772)
...+...... .......+++++.++|||||++++.+.....+. .++..+ ..+|...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE-YMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH-HHHHHHHhCccccc
Confidence 4433221100 000146799999999999999999876544443 333333 2356444
No 72
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.24 E-value=3.1e-11 Score=123.01 Aligned_cols=107 Identities=21% Similarity=0.400 Sum_probs=90.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
.++++||.||.+.|..+.++...+| +.+|++||+||...++|+++| |+ +++++++.+||.+++.+....
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~l~~~----- 116 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPELAND----- 116 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHHHHHT-----
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHHHHhc-----
Confidence 4678999999999999999999887 579999999999999999998 55 579999999999999987520
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
.....||+||+|++..++ .++|+.+.++|++||++++.
T Consensus 117 ----------------------~~~~~fD~VFiDa~K~~y-------------~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 117 ----------------------GEEGQFDFVFIDADKRNY-------------LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp ----------------------TTTTSEEEEEEESTGGGH-------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ----------------------cCCCceeEEEEcccccch-------------hhHHHHHhhhccCCeEEEEc
Confidence 112579999999977643 78999999999999999986
No 73
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.24 E-value=6.8e-11 Score=131.89 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=88.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.++.+|||+|||+|.++..+++. |. +|+|+|+|+.+++.++++.. ...+++...|..++ +++||.|++.+++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l----~~~fD~Ivs~~~~ 238 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL----NGQFDRIVSVGMF 238 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc----CCCCCEEEEeCch
Confidence 67899999999999999999886 54 79999999999999988773 34578888887654 3689999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+++.... ...+++++.++|||||++++.+++.+
T Consensus 239 ehvg~~~-----~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 239 EHVGPKN-----YRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred hhCChHH-----HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 9884422 57899999999999999999887644
No 74
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.23 E-value=3.1e-10 Score=114.30 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=88.4
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l 128 (772)
+.....+...+.. .++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.++++..... .+++++++|+..
T Consensus 17 ~~~r~~~~~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~- 92 (187)
T PRK08287 17 EEVRALALSKLEL---HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI- 92 (187)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-
Confidence 3455555566654 567899999999999999998873 3479999999999999987664332 468999988753
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
. + .++||+|++.+.... ...+++++.++|+|||++++.....
T Consensus 93 ~-~-~~~~D~v~~~~~~~~----------~~~~l~~~~~~Lk~gG~lv~~~~~~ 134 (187)
T PRK08287 93 E-L-PGKADAIFIGGSGGN----------LTAIIDWSLAHLHPGGRLVLTFILL 134 (187)
T ss_pred h-c-CcCCCEEEECCCccC----------HHHHHHHHHHhcCCCeEEEEEEecH
Confidence 3 3 368999998765432 4578899999999999998865443
No 75
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.23 E-value=4e-11 Score=109.72 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=84.4
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-CCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
..+||.||+|.|.++..+.+.+|..+|++||++|.+++.|++.+ .....++++++.+|+ .+....
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------------- 67 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------------- 67 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-------------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-------------
Confidence 46899999999999999999889999999999999999999998 223478999999999 432222
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..+||+|+++..... .+ ...=-...+|+.+++.|+|||+|+++.
T Consensus 68 -------------------~~~~D~v~~~~~~~~---~~---~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 68 -------------------LEPFDLVICSGFTLH---FL---LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -------------------SSCEEEEEECSGSGG---GC---CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCCCEEEECCCccc---cc---cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 256999999551110 00 000122578999999999999999974
No 76
>PRK06202 hypothetical protein; Provisional
Probab=99.23 E-value=9.5e-11 Score=122.11 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc----CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA----GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~----g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
.++.+|||+|||+|.++..|++. |. .+|+|+|+|+.|++.++++.. ..++++.++++.+++ +++++||+|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~--~~~~~~~~~~~~~l~-~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR--RPGVTFRQAVSDELV-AEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc--cCCCeEEEEeccccc-ccCCCccEEEE
Confidence 35689999999999999888752 43 379999999999999977652 346888888888888 67889999999
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+.+++|+.+++ ...+++++.|+++ |.+++.++..+
T Consensus 136 ~~~lhh~~d~~-----~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 136 NHFLHHLDDAE-----VVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCeeecCChHH-----HHHHHHHHHHhcC--eeEEEeccccC
Confidence 99999996643 5689999999998 66666666654
No 77
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.22 E-value=5.8e-11 Score=122.78 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=86.8
Q ss_pred eEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 71 QILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 71 ~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
+|||+|||+|.++..+++.. ..+++|+|+|+.+++.++++.... ..++++...|+.+.+ ++ ++||+|++..++++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-FP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-CC-CCCCEeehHHHHHh
Confidence 79999999999999998863 347999999999999998876443 246899999997776 54 58999999999998
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+.+ ...+|++++++|||||++++.++.
T Consensus 80 ~~~-------~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 80 IKD-------KMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCC-------HHHHHHHHHHHcCCCCEEEEEEcc
Confidence 855 578999999999999999988753
No 78
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.21 E-value=8e-11 Score=116.83 Aligned_cols=123 Identities=21% Similarity=0.288 Sum_probs=93.5
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCC-eEEEEeCCHHHHHHHHHHhccCCCC-cEEEEeeccCcccc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFH-GITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQVF 131 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~-~V~gvDiS~~~I~~a~~~~~~~~~~-v~f~~~D~~~l~~~ 131 (772)
...+.+++.. .+..+|||+|||+|.++..++..+.. +|+++|+++.+++.++++....... +++...|+.+..
T Consensus 20 t~lL~~~l~~---~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-- 94 (170)
T PF05175_consen 20 TRLLLDNLPK---HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-- 94 (170)
T ss_dssp HHHHHHHHHH---HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC--
T ss_pred HHHHHHHHhh---ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc--
Confidence 3455666654 35789999999999999999998543 6999999999999998877665544 899999998754
Q ss_pred cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 132 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++++||+|+++..++.-.. ++.....+++++..++|||||.++++.....
T Consensus 95 ~~~~fD~Iv~NPP~~~~~~--~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 95 PDGKFDLIVSNPPFHAGGD--DGLDLLRDFIEQARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp CTTCEEEEEE---SBTTSH--CHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred cccceeEEEEccchhcccc--cchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence 5789999999887654322 1233478999999999999999976654433
No 79
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.21 E-value=6.1e-11 Score=117.83 Aligned_cols=100 Identities=20% Similarity=0.307 Sum_probs=89.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+..+|.|+|||+|..+..|+++ +-..|+|+|-|+.||+.|+++. ++++|..+|+.+.. +...+|+++++.+|
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~--p~~~~dllfaNAvl 102 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWK--PEQPTDLLFANAVL 102 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcC--CCCccchhhhhhhh
Confidence 56789999999999999999998 5567999999999999996655 78999999999997 78899999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+++.+ ...+|..+...|.|||.+.+-.
T Consensus 103 qWlpd-------H~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 103 QWLPD-------HPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhccc-------cHHHHHHHHHhhCCCceEEEEC
Confidence 99987 4689999999999999998753
No 80
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.21 E-value=1.1e-10 Score=119.11 Aligned_cols=127 Identities=17% Similarity=0.318 Sum_probs=103.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEE-ccHHHHHHhhcccCccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHI-TDGIKFVREMKSSSATD 615 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i-~Dg~~~l~~~~~~~~~~ 615 (772)
..+++||.||.+.|..+.++....| +.++++||+||+..+.|+++| |+ ++++.++. +|+++.+....
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--~~~i~~~~~gdal~~l~~~~------ 129 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--DDRIELLLGGDALDVLSRLL------ 129 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--cceEEEEecCcHHHHHHhcc------
Confidence 4679999999999999999999998 779999999999999999998 54 67799999 69999998732
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE-EecCCC
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NLVSRS 694 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~-Nl~~~~ 694 (772)
...||+||+|++.+++ +.||+.+.++|+|||++|+ |+.-+.
T Consensus 130 -------------------------~~~fDliFIDadK~~y-------------p~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 130 -------------------------DGSFDLVFIDADKADY-------------PEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred -------------------------CCCccEEEEeCChhhC-------------HHHHHHHHHHhCCCcEEEEeecccCC
Confidence 3679999999998865 8999999999999999997 443321
Q ss_pred ----h--hHHHHHHHHHHHhccceE
Q 004133 695 ----Q--ATKDMVISRMKMVFNHLF 713 (772)
Q Consensus 695 ----~--~~~~~v~~~l~~vF~~v~ 713 (772)
+ .-....+..+++.+..+.
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~~~~ 196 (219)
T COG4122 172 RVADPSIRDARTQVRGVRDFNDYLL 196 (219)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHh
Confidence 2 233455666666665433
No 81
>PLN03075 nicotianamine synthase; Provisional
Probab=99.19 E-value=3.5e-10 Score=120.46 Aligned_cols=129 Identities=15% Similarity=0.217 Sum_probs=96.1
Q ss_pred cccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHH-HHH-c-CCCeEEEEeCCHHHHHHHHHHhcc-C--CCC
Q 004133 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEH-LYD-A-GFHGITNVDFSKVVISDMLRRNVR-D--RSD 117 (772)
Q Consensus 44 ~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~-La~-~-g~~~V~gvDiS~~~I~~a~~~~~~-~--~~~ 117 (772)
|-+|..|..+...-...+......++.+|||+|||.|.++.. ++. . ....++|+|+++.+++.|++.+.. . ..+
T Consensus 99 Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~r 178 (296)
T PLN03075 99 FPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKR 178 (296)
T ss_pred CCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCC
Confidence 556777777666554444332123678999999998866533 332 2 234699999999999999887743 2 347
Q ss_pred cEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 118 MRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 118 v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
++|.++|+.+.. -..+.||+|++. ++.++...+ ..++++.++++|+|||++++-+
T Consensus 179 V~F~~~Da~~~~-~~l~~FDlVF~~-ALi~~dk~~-----k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 179 MFFHTADVMDVT-ESLKEYDVVFLA-ALVGMDKEE-----KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cEEEECchhhcc-cccCCcCEEEEe-ccccccccc-----HHHHHHHHHHhcCCCcEEEEec
Confidence 999999999865 345789999998 777664333 6899999999999999999987
No 82
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.19 E-value=2.7e-10 Score=116.50 Aligned_cols=111 Identities=20% Similarity=0.138 Sum_probs=85.8
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~ 127 (772)
.+...+.+.+.. .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.++++....+. ++++..+|+.+
T Consensus 59 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 59 HMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 344445555543 57889999999999999888875 2 34799999999999999887754432 48999999987
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.. ....+||+|++..++.++ .+++.++|+|||++++..
T Consensus 136 ~~-~~~~~fD~Ii~~~~~~~~-------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 136 GL-EKHAPFDAIIVTAAASTI-------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CC-ccCCCccEEEEccCcchh-------------hHHHHHhcCcCcEEEEEE
Confidence 55 456799999998876544 246789999999997754
No 83
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.19 E-value=1.7e-10 Score=119.57 Aligned_cols=136 Identities=18% Similarity=0.268 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCCCccc--cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHH
Q 004133 28 KENWDKFFTIRGIGDSFE--WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~e--W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~ 105 (772)
.+.|++.|.... -..+. +...+......+..++......++.+|||+|||+|.++..+++.+. .|+++|+|+.|++
T Consensus 22 ~~~w~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~ 99 (230)
T PRK07580 22 FDRWARIYSDAP-VSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVE 99 (230)
T ss_pred cchHHHhhCcCc-hhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHH
Confidence 357887776531 11110 1112223333444554321124678999999999999999998876 5999999999999
Q ss_pred HHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeE
Q 004133 106 DMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGK 174 (772)
Q Consensus 106 ~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~ 174 (772)
.++++..... .++.|.++|+ + ..+++||+|++..+++++..+. ...+++.+.+.+++++.
T Consensus 100 ~a~~~~~~~~~~~~i~~~~~d~---~-~~~~~fD~v~~~~~l~~~~~~~-----~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 100 EARERAPEAGLAGNITFEVGDL---E-SLLGRFDTVVCLDVLIHYPQED-----AARMLAHLASLTRGSLI 161 (230)
T ss_pred HHHHHHHhcCCccCcEEEEcCc---h-hccCCcCEEEEcchhhcCCHHH-----HHHHHHHHHhhcCCeEE
Confidence 9988775443 3689999984 3 3467899999999998765433 67888999887754443
No 84
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.19 E-value=1.6e-10 Score=121.75 Aligned_cols=125 Identities=21% Similarity=0.324 Sum_probs=96.3
Q ss_pred ccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHH--HHhccCCCCcEEEE
Q 004133 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML--RRNVRDRSDMRWRV 122 (772)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~--~~~~~~~~~v~f~~ 122 (772)
||..++. -..+..++.. -.+.+|||||||+|..+..++..|.+.|+|+|.+.-...+.+ +++......+.+.-
T Consensus 97 EWrSd~K--W~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp 171 (315)
T PF08003_consen 97 EWRSDWK--WDRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP 171 (315)
T ss_pred cccccch--HHHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC
Confidence 4655432 2335566643 468899999999999999999999989999999998877643 33332223344444
Q ss_pred eeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 123 MDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 123 ~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
.-+.+++ . .+.||+|++.|+|.|..+| ..+|.+++..|++||.+++-|+.-+
T Consensus 172 lgvE~Lp-~-~~~FDtVF~MGVLYHrr~P-------l~~L~~Lk~~L~~gGeLvLETlvi~ 223 (315)
T PF08003_consen 172 LGVEDLP-N-LGAFDTVFSMGVLYHRRSP-------LDHLKQLKDSLRPGGELVLETLVID 223 (315)
T ss_pred cchhhcc-c-cCCcCEEEEeeehhccCCH-------HHHHHHHHHhhCCCCEEEEEEeeec
Confidence 6778888 4 7899999999999999886 4799999999999999999887543
No 85
>PRK14967 putative methyltransferase; Provisional
Probab=99.18 E-value=2.2e-10 Score=118.74 Aligned_cols=112 Identities=19% Similarity=0.197 Sum_probs=86.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..++..+..+++++|+|+.+++.++++....+.+++++++|+.+. +++++||+|+++..+.
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--VEFRPFDVVVSNPPYV 112 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh--ccCCCeeEEEECCCCC
Confidence 46789999999999999999888766899999999999999877655455688999998764 4678999999875432
Q ss_pred cccc--------------CccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 147 ALME--------------PELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 147 ~l~~--------------~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.... ..+.......+++++.++||+||+++++.-
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1111 011122357789999999999999998643
No 86
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.16 E-value=6.7e-10 Score=112.97 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=88.5
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~ 127 (772)
+++......+.. .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++....+ .++.++++|+.+
T Consensus 27 ~~r~~~l~~l~~---~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 27 EIRALALSKLRL---RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHHHcCC---CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence 444444445544 67899999999999999988764 3 3579999999999999987765543 478999999987
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
......+.||.|++.+... . ...+++.+.++|||||++++.....
T Consensus 104 ~l~~~~~~~D~V~~~~~~~-----~-----~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 104 ILFTINEKFDRIFIGGGSE-----K-----LKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred hHhhcCCCCCEEEECCCcc-----c-----HHHHHHHHHHHcCCCcEEEEEeecH
Confidence 4212346899999854221 1 5689999999999999998754443
No 87
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.16 E-value=2.4e-10 Score=118.00 Aligned_cols=137 Identities=19% Similarity=0.280 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCCCccccccc-----hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHH
Q 004133 28 KENWDKFFTIRGIGDSFEWYAE-----WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~-----~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~ 102 (772)
-..|+..|... ....|... ...+...+..++.. ...++.+|||+|||+|.++..++..+. .|+|+|+|+.
T Consensus 14 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~ 88 (219)
T TIGR02021 14 FQRWARIYGSG---DPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQ 88 (219)
T ss_pred HHHHHHhhCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHH
Confidence 46787777643 11222111 12333344555542 013578999999999999999998865 7999999999
Q ss_pred HHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 103 VISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 103 ~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
|++.++++..... .++.|.++|+.+++ ++||+|++..++.++.... ...+++++.+++++++++.+.
T Consensus 89 ~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~fD~ii~~~~l~~~~~~~-----~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 89 MVQMARNRAQGRDVAGNVEFEVNDLLSLC----GEFDIVVCMDVLIHYPASD-----MAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHHHHHHHHHhcCCCCceEEEECChhhCC----CCcCEEEEhhHHHhCCHHH-----HHHHHHHHHHHhCCCEEEEEC
Confidence 9999988875443 37899999988764 7899999999988774422 678999999999877665543
No 88
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.16 E-value=3.1e-10 Score=122.97 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=83.6
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC------CCCcEEEEeec
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------RSDMRWRVMDM 125 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~------~~~v~f~~~D~ 125 (772)
.....+..++......++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++.... ..++.|.+.|+
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 3444455555431112568999999999999999999886 6999999999999998886432 23578888887
Q ss_pred cCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 126 TSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 126 ~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
.++ +++||+|++..++.|+.++. ...+++.+.+ +.+||.++
T Consensus 207 ~~l----~~~fD~Vv~~~vL~H~p~~~-----~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 207 ESL----SGKYDTVTCLDVLIHYPQDK-----ADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred hhc----CCCcCEEEEcCEEEecCHHH-----HHHHHHHHHh-hcCCEEEE
Confidence 654 47899999999998875532 4567777775 45565544
No 89
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.15 E-value=4e-10 Score=124.71 Aligned_cols=120 Identities=14% Similarity=0.158 Sum_probs=92.2
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeeccCc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM 128 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~----~~v~f~~~D~~~l 128 (772)
..++.+++.. ....+|||+|||+|.++..+++.+ ..+|+++|+|+.|++.++++..... .++++...|+.+.
T Consensus 217 trllL~~lp~---~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 217 ARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHhCCc---ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 4456666654 345699999999999999998873 3579999999999999987764333 2578888888653
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
++.++||+|+++..++..... ......++|+.+.++|+|||.++++..
T Consensus 294 --~~~~~fDlIlsNPPfh~~~~~--~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 294 --VEPFRFNAVLCNPPFHQQHAL--TDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred --CCCCCEEEEEECcCcccCccC--CHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 345689999999887754321 122367899999999999999999863
No 90
>PRK04266 fibrillarin; Provisional
Probab=99.14 E-value=5.1e-10 Score=115.97 Aligned_cols=123 Identities=16% Similarity=0.243 Sum_probs=86.8
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEee
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMD 124 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D 124 (772)
|......+...+..-++.....++.+|||+|||+|.++..+++. +...|+++|+++.|++.+.+++.. ..++.++.+|
T Consensus 50 ~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-~~nv~~i~~D 128 (226)
T PRK04266 50 WNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-RKNIIPILAD 128 (226)
T ss_pred ECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-cCCcEEEECC
Confidence 55544455554544222222368899999999999999999886 334799999999999988766533 4689999999
Q ss_pred ccCccc--ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 125 MTSMQV--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 125 ~~~l~~--~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+.+... ...++||+|+.... .+ .....+++++.++|||||++++.
T Consensus 129 ~~~~~~~~~l~~~~D~i~~d~~-----~p----~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 129 ARKPERYAHVVEKVDVIYQDVA-----QP----NQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCCcchhhhccccCCEEEECCC-----Ch----hHHHHHHHHHHHhcCCCcEEEEE
Confidence 976210 11356999985321 11 11356789999999999999993
No 91
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.14 E-value=3.5e-10 Score=122.49 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccC-cccccCCC----ccE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTS-MQVFMDET----FDV 138 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~-l~~~~~~s----fDv 138 (772)
++.+|||+|||+|..+..|++.. ..+|+++|+|+.|++.+++++....+ ++.++++|+.+ ++ ++... ..+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEE
Confidence 56799999999999999998873 24699999999999999888755444 46778999987 34 33322 234
Q ss_pred EEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 139 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
++...++.++..++ ..++|++++++|+|||+|++..
T Consensus 142 ~~~gs~~~~~~~~e-----~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 142 FFPGSTIGNFTPEE-----AVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEecccccCCCHHH-----HHHHHHHHHHhcCCCCEEEEec
Confidence 44445666665433 6899999999999999998754
No 92
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.14 E-value=7.2e-10 Score=121.61 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=95.2
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQV 130 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~ 130 (772)
.+...+..+... .++.+|||+|||+|.++..++..|. .++|+|+++.|++.++.++...+ .++.+.++|+.+++
T Consensus 169 ~la~~~~~l~~~---~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~- 243 (329)
T TIGR01177 169 KLARAMVNLARV---TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP- 243 (329)
T ss_pred HHHHHHHHHhCC---CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-
Confidence 344444444443 5788999999999999988877775 69999999999999987764332 34789999999998
Q ss_pred ccCCCccEEEeccccccccc--CccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 131 FMDETFDVILDKGGLDALME--PELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~--~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+.+++||+|+++..+..-.. ..........+++++.++|||||++++.......
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID 299 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence 77889999998654322111 1111233689999999999999999988765443
No 93
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.13 E-value=1e-09 Score=112.55 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-------cccCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------VFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------~~~~~sfD 137 (772)
.++.+|||+|||+|.++..+++. + ...|++||+++ +. ..++++++++|+++.+ .+.+++||
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 46789999999999999999887 2 24799999998 21 2357999999999853 15678999
Q ss_pred EEEecccccccccCccc----hHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 138 VILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~----~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
+|++..+.++...+..+ ......+|+++.++|||||.|++..+....+
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~ 171 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGF 171 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCH
Confidence 99997766654322100 0113679999999999999999988775543
No 94
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.13 E-value=2e-10 Score=105.97 Aligned_cols=112 Identities=24% Similarity=0.334 Sum_probs=87.0
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcc-cccCCCccEEEecccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-VFMDETFDVILDKGGL 145 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l 145 (772)
+.+|||+|||+|.++..+++.+..+++|+|+++.+++.++.+..... .++++.++|+.+.. .+++++||+|+.+..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 36899999999999999999885589999999999999988775543 46999999998864 3678999999998777
Q ss_pred cccccC-ccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 146 DALMEP-ELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 146 ~~l~~~-~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
...... .........+++++.++|||||.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 543221 11122467899999999999999998763
No 95
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.11 E-value=6.6e-10 Score=115.67 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=89.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..+.+.+. +++++|+++.+++.++++.......+.+...|+.+.+...++.||+|++..+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 4678999999999999999988875 699999999999999877654445678888888876423457999999999998
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+..+ ...+++.+.++|+|||++++..+.
T Consensus 126 ~~~~-------~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 126 HVPD-------PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccCC-------HHHHHHHHHHHcCCCcEEEEEecC
Confidence 8865 467899999999999999987654
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.11 E-value=2.6e-09 Score=108.38 Aligned_cols=120 Identities=17% Similarity=0.155 Sum_probs=88.0
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccC-
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS- 127 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~- 127 (772)
......+..++.. .++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++..... .+++++.+|+.+
T Consensus 26 ~~v~~~l~~~l~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 26 REVRLLLISQLRL---EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH
Confidence 3555556666654 57789999999999999988865 23579999999999999987764432 468999999865
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
++ .....+|.++..+. . . ...+++++.++|+|||++++.......+
T Consensus 103 ~~-~~~~~~d~v~~~~~-----~-~-----~~~~l~~~~~~LkpgG~li~~~~~~~~~ 148 (196)
T PRK07402 103 LA-QLAPAPDRVCIEGG-----R-P-----IKEILQAVWQYLKPGGRLVATASSLEGL 148 (196)
T ss_pred Hh-hCCCCCCEEEEECC-----c-C-----HHHHHHHHHHhcCCCeEEEEEeecHHHH
Confidence 22 22234676554221 1 1 5689999999999999999988765443
No 97
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=7.4e-10 Score=113.92 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=87.4
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccC
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~ 127 (772)
+.+...+...+.. .++.+|||+|||+|.++..++.. +. .+|+++|+++.+++.++++....+ .+++++++|+..
T Consensus 62 p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 62 IHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL 138 (212)
T ss_pred HHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence 4555556666654 67899999999999999988876 32 479999999999999988875443 479999999987
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.. .+.+.||+|+....... +.+.+.+.|||||++++..
T Consensus 139 ~~-~~~~~fD~I~~~~~~~~-------------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 139 GY-EENAPYDRIYVTAAGPD-------------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CC-CcCCCcCEEEECCCccc-------------chHHHHHhhCCCcEEEEEE
Confidence 65 56789999998765432 2346677899999988853
No 98
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.10 E-value=9.5e-10 Score=120.80 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=104.3
Q ss_pred CCCCHHHHHHHHHhcC-----CCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEE
Q 004133 24 DFTSKENWDKFFTIRG-----IGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNV 97 (772)
Q Consensus 24 ~f~~~~yWd~~y~~~~-----~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gv 97 (772)
.|...+||..+ .... .+..|.|-. .+.-...+...+.. ....+|||+|||+|.++..+++.+ ..+|+++
T Consensus 152 ~~~~~~~~~~y-~~~~l~i~~~pgvFs~~~-lD~gt~lLl~~l~~---~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~v 226 (342)
T PRK09489 152 VFDADKFWKEY-QVDGLTVKTLPGVFSRDG-LDVGSQLLLSTLTP---HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLS 226 (342)
T ss_pred CCcccccceee-ecCCEEEEeCCCCCCCCC-CCHHHHHHHHhccc---cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEE
Confidence 36666777643 2211 122344422 22333455565543 345699999999999999999873 3479999
Q ss_pred eCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEE
Q 004133 98 DFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177 (772)
Q Consensus 98 DiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii 177 (772)
|+|+.|++.++++........++...|+.+. ..+.||+|+++..+|..... .......+++++.++|||||.+++
T Consensus 227 Dis~~Al~~A~~nl~~n~l~~~~~~~D~~~~---~~~~fDlIvsNPPFH~g~~~--~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 227 DVSAAALESSRATLAANGLEGEVFASNVFSD---IKGRFDMIISNPPFHDGIQT--SLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred ECCHHHHHHHHHHHHHcCCCCEEEEcccccc---cCCCccEEEECCCccCCccc--cHHHHHHHHHHHHHhcCcCCEEEE
Confidence 9999999999887766555667888887652 35789999999888764321 123368999999999999999988
Q ss_pred EEcC
Q 004133 178 LTLA 181 (772)
Q Consensus 178 ~~~~ 181 (772)
+...
T Consensus 302 Van~ 305 (342)
T PRK09489 302 VANA 305 (342)
T ss_pred EEeC
Confidence 7644
No 99
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.10 E-value=8.1e-10 Score=113.85 Aligned_cols=111 Identities=16% Similarity=0.064 Sum_probs=85.7
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~--~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l 128 (772)
.....+.+++.. .++.+|||+|||+|.++..|++... .+|+++|+++.+++.+++++...+ .+++++++|+.+.
T Consensus 64 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 64 HMVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC
Confidence 344455556654 6789999999999999999988732 359999999999999988875543 4799999999875
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
. ...++||+|+....... +.+.+.+.|+|||++++..
T Consensus 141 ~-~~~~~fD~Ii~~~~~~~-------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 141 W-EPLAPYDRIYVTAAGPK-------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred C-cccCCCCEEEEcCCccc-------------ccHHHHHhcCcCcEEEEEE
Confidence 4 34578999997654432 3456788999999998764
No 100
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.09 E-value=8.6e-10 Score=118.73 Aligned_cols=105 Identities=16% Similarity=0.287 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..++..|..+|+++|+|+.+++.++++...... .+.+...|.. . ..+++||+|+++..
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~-~~~~~fDlVvan~~ 234 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--Q-PIEGKADVIVANIL 234 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--c-ccCCCceEEEEecC
Confidence 36789999999999999999888877899999999999999887754432 3455555532 3 34679999998754
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
.+. +..++.++.++|||||++++..+....
T Consensus 235 ~~~----------l~~ll~~~~~~LkpgG~li~sgi~~~~ 264 (288)
T TIGR00406 235 AEV----------IKELYPQFSRLVKPGGWLILSGILETQ 264 (288)
T ss_pred HHH----------HHHHHHHHHHHcCCCcEEEEEeCcHhH
Confidence 332 467899999999999999998776443
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.09 E-value=1.5e-09 Score=111.54 Aligned_cols=138 Identities=18% Similarity=0.107 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHH
Q 004133 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (772)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I 104 (772)
|-...||+..|.....+-...-+...+.+...+..++.. .++.+|||+|||+|.++..++..+ .+++++|+++.++
T Consensus 38 f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~ 113 (212)
T PRK00312 38 FVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQ 113 (212)
T ss_pred cCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHH
Confidence 333456666665442110000011233455556666654 578999999999999998887774 3799999999999
Q ss_pred HHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 105 SDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 105 ~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+.+++++...+ .++++.++|+.+.. ...++||+|++...+.+ +.+.+.+.|+|||++++...
T Consensus 114 ~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~~~~-------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 114 WEAKRRLKQLGLHNVSVRHGDGWKGW-PAYAPFDRILVTAAAPE-------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHHHHHHCCCCceEEEECCcccCC-CcCCCcCEEEEccCchh-------------hhHHHHHhcCCCcEEEEEEc
Confidence 99988775433 36899999987643 24578999998765443 33567899999999988764
No 102
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.08 E-value=2.9e-10 Score=112.76 Aligned_cols=102 Identities=23% Similarity=0.351 Sum_probs=82.6
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC-cccccCC
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-MQVFMDE 134 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~-l~~~~~~ 134 (772)
.+..++ .|+.+|||+|||.|.+..+|.+..-...+|+|+++..+..+.++ .+..+++|+.+ +..|+++
T Consensus 6 ~I~~~I-----~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 6 IIAEWI-----EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HHHHHc-----CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhCCCC
Confidence 466677 47899999999999999999886334699999999998877544 47899999976 4458999
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+||.||.+.+|.++..+ ..+|+|+.|+ |...++.
T Consensus 75 sFD~VIlsqtLQ~~~~P-------~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 75 SFDYVILSQTLQAVRRP-------DEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred CccEEehHhHHHhHhHH-------HHHHHHHHHh---cCeEEEE
Confidence 99999999999999875 4788888777 4444443
No 103
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.08 E-value=4.5e-10 Score=113.87 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc--cccCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--VFMDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~--~~~~~sfDvVi~~~ 143 (772)
...+|||+|||+|.++..++.. +..+|+|+|+++.+++.|+++..... .+++++++|+.++. .++++++|.|+.+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999987 34579999999999999987764432 47999999998753 13567899998765
Q ss_pred cccccccCcc-chHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 144 GLDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 144 ~l~~l~~~~~-~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
...+...... ..-....++++++++|||||.+++.+-....
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~ 137 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPL 137 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 4333211000 0000257999999999999999998866543
No 104
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.08 E-value=3.4e-09 Score=109.83 Aligned_cols=157 Identities=18% Similarity=0.228 Sum_probs=118.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||.|.|+++.+|....+.++|++||+++.+.+.|++...+. -.+|++|+.+|--+|.+...
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~---------- 112 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV---------- 112 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc----------
Confidence 4578999999999999999999988899999999999999999998664 36899999999999977754
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCC-cCCcC---------CCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMT-CPAAD---------FVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s-~Pp~~---------f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+||+||+ +.+-...+-. |+.+. ..-+++++.++.+|+|+|.+.+
T Consensus 113 ---------------------~~~fD~Ii~--NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~- 168 (248)
T COG4123 113 ---------------------FASFDLIIC--NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF- 168 (248)
T ss_pred ---------------------ccccCEEEe--CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-
Confidence 247999998 3333222322 44443 4468899999999999999985
Q ss_pred ecCCChhHHHHHHHHHHH-hccc---eEEEe-ecCCceEEEEEecCCCc
Q 004133 690 LVSRSQATKDMVISRMKM-VFNH---LFCLQ-LEEDVNLVLFGLSSESC 733 (772)
Q Consensus 690 l~~~~~~~~~~v~~~l~~-vF~~---v~~~~-~~~~~N~vl~a~~~~~~ 733 (772)
+.|...+ ..++..+++ -|.- ++.++ .+...|.||+...-...
T Consensus 169 -V~r~erl-~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 169 -VHRPERL-AEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred -EecHHHH-HHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCCC
Confidence 3354443 457888877 4441 22332 24568899988766543
No 105
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.07 E-value=3.6e-10 Score=118.30 Aligned_cols=132 Identities=19% Similarity=0.212 Sum_probs=100.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--C-----CcEEEEeeccCcc-----cccCC
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--S-----DMRWRVMDMTSMQ-----VFMDE 134 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~-----~v~f~~~D~~~l~-----~~~~~ 134 (772)
++.+.+|++|||-|......-..|...++|+||++..|++|++++..-. . .+.|+++|.+.-. .+.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 3688999999999999988888888889999999999999999874321 1 3689999987622 14566
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEE
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 201 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~ 201 (772)
+||+|-+..++|+....+ ..+..+|.++.+.|+|||+||...-...-+...+-..-...|.-.+
T Consensus 196 ~fDivScQF~~HYaFete---e~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdi 259 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETE---ESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDI 259 (389)
T ss_pred CcceeeeeeeEeeeeccH---HHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhccee
Confidence 699999999999876643 3478999999999999999998776555555444433222444444
No 106
>PLN02476 O-methyltransferase
Probab=99.06 E-value=1.1e-09 Score=116.13 Aligned_cols=107 Identities=15% Similarity=0.265 Sum_probs=90.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
..+++||.||.|.|..+.++....| ..+|+++|+||+..++|+++| |+ .++++++.||+.++|.+...
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~~~I~li~GdA~e~L~~l~~------ 188 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--SHKVNVKHGLAAESLKSMIQ------ 188 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHh------
Confidence 4578999999999999999988765 568999999999999999998 66 46899999999999987531
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
......||+||+|++...+ .++++.+.++|++||+++++
T Consensus 189 ---------------------~~~~~~FD~VFIDa~K~~Y-------------~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 189 ---------------------NGEGSSYDFAFVDADKRMY-------------QDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred ---------------------cccCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCcEEEEe
Confidence 0112579999999986543 88999999999999999975
No 107
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.05 E-value=1.1e-09 Score=113.24 Aligned_cols=105 Identities=24% Similarity=0.344 Sum_probs=89.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCccccc-CCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFM-DETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~-~~sfDvVi~~~~l 145 (772)
.+.+|||+|||+|.++..+++.+. .++++|+++.+++.++++...... ++++.+.|+.+.+ .. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA-EKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-cCCCCCccEEEehhHH
Confidence 478999999999999999988776 599999999999999887755444 6899999998876 33 3789999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
++..+ ...+++++.++|+|||.+++.+..
T Consensus 123 ~~~~~-------~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 123 EHVPD-------PQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred HhCCC-------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 88865 468999999999999999887654
No 108
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.05 E-value=9e-10 Score=120.11 Aligned_cols=121 Identities=23% Similarity=0.271 Sum_probs=91.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc-------CC----CCcEEEEeeccCcc---cccC
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-------DR----SDMRWRVMDMTSMQ---VFMD 133 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~-------~~----~~v~f~~~D~~~l~---~~~~ 133 (772)
++.+|||+|||-|.........+...++|+|+|+..|++|++|+.. .. -...|+++|..... .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6899999999999998888888888999999999999999999821 11 14567888887532 1333
Q ss_pred --CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccc
Q 004133 134 --ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 191 (772)
Q Consensus 134 --~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~ 191 (772)
..||+|-+...+|+....+ ..++.+|+.+.+.|+|||+||..+.....+...+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese---~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESE---EKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSH---HHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred cCCCcceeehHHHHHHhcCCH---HHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 4999999999999988754 447889999999999999999999887666444433
No 109
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.05 E-value=2.1e-09 Score=115.50 Aligned_cols=111 Identities=19% Similarity=0.127 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
++.+|||+|||+|.++..++... ..+|+++|+|+.+++.|+++....+ .+++|+++|+.+. +++++||+|+++..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECCC
Confidence 45799999999999999999863 3479999999999999988875443 3689999998653 35568999998632
Q ss_pred c------cccc------------cCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 145 L------DALM------------EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 145 l------~~l~------------~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
. ..+. ..+++...+..+++++.++|+|||++++..-
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 1111 1112234468899999999999999987653
No 110
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.05 E-value=1.6e-09 Score=113.73 Aligned_cols=110 Identities=20% Similarity=0.225 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+.+|||+|||+|.++..++.. +..+++|+|+|+.+++.++++...... ++++.++|+.+ . +++++||+|+++..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~-~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-P-LPGGKFDLIVSNPPY 164 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-c-CcCCceeEEEECCCC
Confidence 3569999999999999999886 334799999999999999877654333 58999999987 4 567899999986543
Q ss_pred cccc------cC-------------ccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALM------EP-------------ELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~------~~-------------~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.... .. .++......+++++.++|+|||++++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3211 00 0011124578999999999999998764
No 111
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.04 E-value=1.7e-09 Score=117.50 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=86.5
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.+..+|||+|||+|.++..+++.. ..+++++|. +.+++.++++....+ .+++++.+|+.+.+ ++ .+|+|+..+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-~~--~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-YP--EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-CC--CCCEEEeEh
Confidence 567899999999999999998873 347999998 789998887765433 36899999998766 54 379999999
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+++...++. ..+++++++++|+|||++++.++.
T Consensus 224 ~lh~~~~~~-----~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 224 ILYSANEQL-----STIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred hhhcCChHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 888765432 578999999999999999999753
No 112
>PRK14968 putative methyltransferase; Provisional
Probab=99.04 E-value=3.8e-09 Score=105.72 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCC---cEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD---MRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~---v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++....... +.+.+.|+.+. +.+.+||+|+.+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEECC
Confidence 467799999999999999999886 47999999999999998776443322 88999998774 4556899999876
Q ss_pred cccccc--------------cCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 144 GLDALM--------------EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 144 ~l~~l~--------------~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.+.... ....+......+++++.++|||||.+++...
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 543211 0011122357789999999999999887653
No 113
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.03 E-value=3.7e-09 Score=117.31 Aligned_cols=124 Identities=10% Similarity=0.060 Sum_probs=91.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccccc-CCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFM-DETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~-~~sfDvVi~~~~l 145 (772)
++.+|||+|||+|.++..++.. +..+|+++|+|+.|++.++++....+.+++++++|+.+.. ++ .++||+|+++-..
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~-l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD-MPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc-cccCCCccEEEECCCC
Confidence 4569999999999999998875 4457999999999999998887655568999999997654 32 4689999986642
Q ss_pred c------------------ccccCccchHHHHHHHHHHHhccccCeEEEEE-EcCchhhhhccccc
Q 004133 146 D------------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL-TLAESHVLGLLFPK 192 (772)
Q Consensus 146 ~------------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~-~~~~~~~~~~l~~~ 192 (772)
- ++...+++...+.++++.+.++|+|||.+++. .+.|......++..
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~ 395 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE 395 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHH
Confidence 1 11112233344778999999999999998763 45555544455444
No 114
>PLN03075 nicotianamine synthase; Provisional
Probab=99.03 E-value=2.6e-09 Score=113.81 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=105.2
Q ss_pred CCCeEEEEccccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC--CCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG--FTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg--~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+.+|+.||.|.| +...+++.++|+.+++++|+||++++.|++++. ..-.++++++.+|+.+....
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---------- 192 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---------- 192 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc----------
Confidence 6789999999966 444455578899999999999999999999993 22368999999999884211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
..+||+|++++-- +|.-+ --..+|+.+.+.|+|||+|++-.......+
T Consensus 193 -----------------------l~~FDlVF~~ALi-----~~dk~----~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~ 240 (296)
T PLN03075 193 -----------------------LKEYDVVFLAALV-----GMDKE----EKVKVIEHLGKHMAPGALLMLRSAHGARAF 240 (296)
T ss_pred -----------------------cCCcCEEEEeccc-----ccccc----cHHHHHHHHHHhcCCCcEEEEecccchHhh
Confidence 2569999998521 11000 118899999999999999998764333333
Q ss_pred HHHHH-HHHHHhccceEEEeecCC-ceEEEEEecCCC
Q 004133 698 KDMVI-SRMKMVFNHLFCLQLEED-VNLVLFGLSSES 732 (772)
Q Consensus 698 ~~~v~-~~l~~vF~~v~~~~~~~~-~N~vl~a~~~~~ 732 (772)
...++ ...-+-|..+..++..++ +|.|+|+.+...
T Consensus 241 LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~~ 277 (296)
T PLN03075 241 LYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPGG 277 (296)
T ss_pred cCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeecC
Confidence 22211 222236776666665444 699999988653
No 115
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.02 E-value=1.6e-09 Score=115.55 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=84.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhc-cCCCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~-~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.++..++... ..+++++|+|+.+++.++++.. ....++.+.++|+.+. +.+++||+|+++..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~--~~~~~fD~Iv~npP 184 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP--LPGGRFDLIVSNPP 184 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc--CCCCceeEEEECCC
Confidence 467899999999999999998873 4579999999999999988765 2345799999998664 34678999998543
Q ss_pred ccc-------------------cccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 145 LDA-------------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 145 l~~-------------------l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
... +....++.....++++++.++|+|||++++..
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 211 11111223346889999999999999998754
No 116
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=2.3e-09 Score=113.90 Aligned_cols=124 Identities=17% Similarity=0.261 Sum_probs=91.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~--v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+|||+|||+|.+++..++.|...++|+|+.+.+++.++.+...++-. +.....+....+ ..++||+|+++=.
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~--~~~~~DvIVANIL 238 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP--ENGPFDVIVANIL 238 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc--ccCcccEEEehhh
Confidence 368999999999999999999999988999999999999998887655433 333334443333 3469999998663
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccc-cCCcEEEEEE
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHA 203 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~~~ 203 (772)
-+- +..+...+.+.|||||+++++-.-..+ .+.....+ ..+|.+..+.
T Consensus 239 A~v----------l~~La~~~~~~lkpgg~lIlSGIl~~q-~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 239 AEV----------LVELAPDIKRLLKPGGRLILSGILEDQ-AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHH----------HHHHHHHHHHHcCCCceEEEEeehHhH-HHHHHHHHHhCCCeEeEEE
Confidence 222 578999999999999999998876555 33333333 3466555444
No 117
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.01 E-value=3.5e-09 Score=114.83 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=82.8
Q ss_pred CeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecccc-
Q 004133 70 PQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGGL- 145 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l- 145 (772)
.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++....+ .+++++++|+.+. +++++||+|+++...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA--LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh--CCCCCccEEEECCCCC
Confidence 68999999999999999887 33579999999999999988875443 3599999998763 345689999986321
Q ss_pred -----c------------ccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 -----D------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 -----~------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
. ++...+++...+..+++++.++|+|||++++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 011112233457889999999999999999854
No 118
>PTZ00146 fibrillarin; Provisional
Probab=99.01 E-value=3.1e-09 Score=112.84 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=92.4
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~ 123 (772)
|......+...|..-++.....++.+|||+|||+|.++..+++. | ...|+++|+|+.|++.+.+.+. ..+++.++..
T Consensus 110 w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~ 188 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIE 188 (293)
T ss_pred eCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEEC
Confidence 76666677777766555444578899999999999999999987 3 3469999999998877766653 3478999999
Q ss_pred eccCcc--cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 124 DMTSMQ--VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 124 D~~~l~--~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
|+.... .+..++||+|++... ..+ ....++.++.++|||||+|++.
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva---~pd------q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVA---QPD------QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCC---Ccc------hHHHHHHHHHHhccCCCEEEEE
Confidence 987521 023468999987653 111 1456777899999999999984
No 119
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.01 E-value=2.9e-09 Score=112.36 Aligned_cols=100 Identities=20% Similarity=0.233 Sum_probs=75.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..++..|..+|+|+|+|+.+++.++++....... +...+. ..+.+||+|+++...+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~------~~~~~~-~~~~~fD~Vvani~~~ 190 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE------LNVYLP-QGDLKADVIVANILAN 190 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC------ceEEEc-cCCCCcCEEEEcCcHH
Confidence 367899999999999999888888767999999999999998877543321 111112 1223799999864322
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
. +..+++++.++|||||++++..+...
T Consensus 191 ~----------~~~l~~~~~~~LkpgG~lilsgi~~~ 217 (250)
T PRK00517 191 P----------LLELAPDLARLLKPGGRLILSGILEE 217 (250)
T ss_pred H----------HHHHHHHHHHhcCCCcEEEEEECcHh
Confidence 1 56789999999999999999876643
No 120
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.01 E-value=2.2e-09 Score=111.98 Aligned_cols=106 Identities=15% Similarity=0.286 Sum_probs=87.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
..+++||.||.|.|+.+.++....+ ..+|+++|+||..+++|+++| |+ +++++++.+|+.+++.+...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl--~~~i~~~~gda~~~L~~l~~------ 138 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV--DHKINFIQSDALSALDQLLN------ 138 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEccHHHHHHHHHh------
Confidence 4578999999999988777777654 679999999999999999998 55 47899999999999987641
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
......||+|++|++...+ ..+++.+.+.|+|||++++
T Consensus 139 ---------------------~~~~~~fD~VfiDa~k~~y-------------~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 139 ---------------------NDPKPEFDFAFVDADKPNY-------------VHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred ---------------------CCCCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCeEEEE
Confidence 0013579999999875432 5789999999999999986
No 121
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.00 E-value=2.3e-09 Score=112.26 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=89.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
..+++||.||.+.|..+.++....| ..+|+++|+||...++|+++| |+ .+++++++||+.++|.+....
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~--~~~I~~~~G~a~e~L~~l~~~----- 150 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPVLDQMIED----- 150 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeccHHHHHHHHHhc-----
Confidence 4678999999999988888887764 679999999999999999999 55 579999999999999886410
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
......||+||+|++...+ ..+|+.+.++|++||++++.
T Consensus 151 ---------------------~~~~~~fD~iFiDadK~~Y-------------~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 151 ---------------------GKYHGTFDFIFVDADKDNY-------------INYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ---------------------cccCCcccEEEecCCHHHh-------------HHHHHHHHHhcCCCeEEEEc
Confidence 0012579999999986532 78899999999999999864
No 122
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.00 E-value=1.9e-09 Score=115.44 Aligned_cols=123 Identities=16% Similarity=0.287 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++...++.|.++|+++|+++.+++.+++++..++..-.+.+....+ ...+.||+|+++-..+
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~---~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED---LVEGKFDLVVANILAD 236 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC---TCCS-EEEEEEES-HH
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc---cccccCCEEEECCCHH
Confidence 4678999999999999999999999899999999999999998876665444444432222 3458999999876555
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEE
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHA 203 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~ 203 (772)
- +..++..+.++|+|||+++++-+..... ..+...+..+|.+....
T Consensus 237 v----------L~~l~~~~~~~l~~~G~lIlSGIl~~~~-~~v~~a~~~g~~~~~~~ 282 (295)
T PF06325_consen 237 V----------LLELAPDIASLLKPGGYLILSGILEEQE-DEVIEAYKQGFELVEER 282 (295)
T ss_dssp H----------HHHHHHHCHHHEEEEEEEEEEEEEGGGH-HHHHHHHHTTEEEEEEE
T ss_pred H----------HHHHHHHHHHhhCCCCEEEEccccHHHH-HHHHHHHHCCCEEEEEE
Confidence 4 4578899999999999999987765432 23344443366554433
No 123
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.99 E-value=3.6e-09 Score=97.57 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=86.1
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.+||.+|+|.|.++..+.+.. ..++++||+||..+++|+..+... -+++++++++|..++.+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~------------- 67 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP------------- 67 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-------------
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-------------
Confidence 479999999999999999987 679999999999999999998433 25789999999999874443
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+||+|+.|..-.... .. -....-....|++.+.+.|+|+|++++-+.
T Consensus 68 ------------------~~~~D~Iv~npP~~~~~-~~-~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 68 ------------------DGKFDLIVTNPPYGPRS-GD-KAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp ------------------TT-EEEEEE--STTSBT-T-----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ------------------CceeEEEEECCCCcccc-cc-chhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 47899999966332110 00 011122567999999999999999998653
No 124
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.99 E-value=3.1e-09 Score=117.27 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=90.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCc-ccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM-QVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l-~~~~~~sfDvVi~~~ 143 (772)
..+..+||||||+|.++..++.. +..+++|+|+++.+++.+.++....+ .++.++++|+..+ ..++++++|.|+.+.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 34679999999999999999987 34579999999999999988775543 4899999999764 127789999999765
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
...|.... ...-....++++++|+|+|||.+.+.|-..+.+
T Consensus 201 PdPW~Kkr-HRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 201 PVPWDKKP-HRRVISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred CCCccccc-hhhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 44332211 000013689999999999999999988766544
No 125
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.99 E-value=2.8e-09 Score=107.98 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC-cccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-MQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~-l~~~~~~sfDvVi~~~~l~ 146 (772)
++.+|||+|||+|.++..+++.+...++|+|+|+.+++.++++ +++++++|+.+ ++.+++++||+|++.++++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 5689999999999999998876444689999999999887532 47899999976 4226678999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhcccc
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKS 171 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkp 171 (772)
++.+ ...+++++.|++++
T Consensus 87 ~~~d-------~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 ATRN-------PEEILDEMLRVGRH 104 (194)
T ss_pred cCcC-------HHHHHHHHHHhCCe
Confidence 9866 46788998887664
No 126
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.98 E-value=3.5e-09 Score=105.59 Aligned_cols=122 Identities=22% Similarity=0.339 Sum_probs=94.9
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC-cccccC
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-MQVFMD 133 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~-l~~~~~ 133 (772)
..-.+++.... ....-|||||||+|..+..|.+.|. ..+|+|||+.|++.|.++-. .-.++.+|+-. +| |..
T Consensus 38 eRaLELLalp~-~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~----egdlil~DMG~Glp-frp 110 (270)
T KOG1541|consen 38 ERALELLALPG-PKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL----EGDLILCDMGEGLP-FRP 110 (270)
T ss_pred HHHHHHhhCCC-CCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh----hcCeeeeecCCCCC-CCC
Confidence 33344444322 2367899999999999999999895 69999999999999986432 23578888865 77 999
Q ss_pred CCccEEEecccccccccCc----cchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 134 ETFDVILDKGGLDALMEPE----LGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~----~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++||-||+...+.++.+.. ++...+..+|..++.+|++|++.++-.|...
T Consensus 111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 9999999999888876533 2223478899999999999999999887654
No 127
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.97 E-value=4e-09 Score=92.82 Aligned_cols=102 Identities=29% Similarity=0.366 Sum_probs=82.6
Q ss_pred eEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHh-ccCCCCcEEEEeeccCcccccCCCccEEEecccccccc
Q 004133 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN-VRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALM 149 (772)
Q Consensus 71 ~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~-~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~ 149 (772)
+|||+|||+|.++..++..+..+++++|+++.+++.+++.. ......+++...|+.+......++||+|++..+++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 58999999999999998754568999999999999887433 22345789999999987612567899999999988741
Q ss_pred cCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 150 EPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 150 ~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
. ....+++.+.+.|+|||.+++.
T Consensus 81 ~------~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 E------DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h------HHHHHHHHHHHHcCCCCEEEEE
Confidence 1 1679999999999999999876
No 128
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.96 E-value=8.1e-09 Score=110.99 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=88.2
Q ss_pred CeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccc-
Q 004133 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGL- 145 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l- 145 (772)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.++++....+. +++|+++|+.+. ++..+||+|+++...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--LAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--CcCCCccEEEECCCCC
Confidence 699999999999999999873 34799999999999999887654433 499999999763 455589999986321
Q ss_pred ------------c-----ccccCccchHHHHHHHHHHHhccccCeEEEEEE-cCchhhhhcccc
Q 004133 146 ------------D-----ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT-LAESHVLGLLFP 191 (772)
Q Consensus 146 ------------~-----~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~-~~~~~~~~~l~~ 191 (772)
. ++...+++...+..+++++.++|+|||++++.. +.|.+....++.
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~ 257 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLR 257 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHH
Confidence 1 111222333458899999999999999998754 444554444443
No 129
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.95 E-value=1.9e-09 Score=105.95 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=71.1
Q ss_pred EEEeCCHHHHHHHHHHhccC----CCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccc
Q 004133 95 TNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 170 (772)
Q Consensus 95 ~gvDiS~~~I~~a~~~~~~~----~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLk 170 (772)
+|+|+|+.|++.|+++.... ..+++|+++|+.+++ +++++||+|++..+++++.+ ..+++++++|+||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~~d-------~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNVVD-------RLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcCCC-------HHHHHHHHHHHcC
Confidence 58999999999997765321 246999999999999 99999999999999998865 5799999999999
Q ss_pred cCeEEEEEEcCchh
Q 004133 171 SGGKFVCLTLAESH 184 (772)
Q Consensus 171 pGG~~ii~~~~~~~ 184 (772)
|||++++.++..++
T Consensus 73 pGG~l~i~d~~~~~ 86 (160)
T PLN02232 73 PGSRVSILDFNKSN 86 (160)
T ss_pred cCeEEEEEECCCCC
Confidence 99999999988654
No 130
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.94 E-value=1.2e-08 Score=102.74 Aligned_cols=147 Identities=13% Similarity=0.125 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEE
Q 004133 518 SYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVH 597 (772)
Q Consensus 518 ~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~ 597 (772)
-+++.|+-.+.+.. .+ +.+.+||.||+|+|.++..+....|..+|++||+++.+++.|++...-..-++++++
T Consensus 28 ~~~~~~~d~l~l~~-~l------~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~ 100 (187)
T PRK00107 28 LWERHILDSLAIAP-YL------PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHh-hc------CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence 45666665554432 12 236789999999999999888888889999999999999999987622212349999
Q ss_pred EccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHH
Q 004133 598 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK 677 (772)
Q Consensus 598 i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~ 677 (772)
.+|+.++-. ..+||+|+++... .+ ..+++.+.
T Consensus 101 ~~d~~~~~~----------------------------------~~~fDlV~~~~~~--------~~------~~~l~~~~ 132 (187)
T PRK00107 101 HGRAEEFGQ----------------------------------EEKFDVVTSRAVA--------SL------SDLVELCL 132 (187)
T ss_pred eccHhhCCC----------------------------------CCCccEEEEcccc--------CH------HHHHHHHH
Confidence 999876411 2579999985321 01 68999999
Q ss_pred HccCCCcEEEEEecCCChhHHHHHHHHHHHhccceEEEeecC
Q 004133 678 DALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEE 719 (772)
Q Consensus 678 ~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~ 719 (772)
+.|+|||.|++=...........+...+.-.-..+|.+.++.
T Consensus 133 ~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK00107 133 PLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG 174 (187)
T ss_pred HhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence 999999999976644433333333344434445667776543
No 131
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.94 E-value=8.5e-09 Score=95.67 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=82.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.||+|.|.++..+.+.+|..+|++||+++.+++.|++++....-++++++.+|+..++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 85 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS-------------- 85 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh--------------
Confidence 468999999999999999999888899999999999999998763222346899989876543322
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+||+|+++... .. ..++++.+.+.|+|||.|++++.
T Consensus 86 ------------------~~~~D~v~~~~~~-----------~~--~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 ------------------LPEPDRVFIGGSG-----------GL--LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ------------------cCCCCEEEECCcc-----------hh--HHHHHHHHHHHcCCCCEEEEEec
Confidence 2479999984311 11 25899999999999999999875
No 132
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.92 E-value=8.3e-09 Score=106.97 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=94.5
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc--CCCCcEEEEeeccCcc-ccc
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR--DRSDMRWRVMDMTSMQ-VFM 132 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~--~~~~v~f~~~D~~~l~-~~~ 132 (772)
|..+... ....+|||+|||+|.++..++++ ...+|++||+.+.+.+.|++.... ...+++++++|+.++. ...
T Consensus 36 L~~~~~~---~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 36 LAAFAPV---PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHhhccc---ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence 4455544 34789999999999999999998 546799999999999999877643 2347999999999875 233
Q ss_pred CCCccEEEecccccccccC--ccch---------HHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 133 DETFDVILDKGGLDALMEP--ELGH---------KLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 133 ~~sfDvVi~~~~l~~l~~~--~~~~---------~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..+||+|+++-.+...... +++. ...+.+++...++|||||++.++.-.
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 4579999999887655443 1111 12789999999999999999988643
No 133
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.5e-08 Score=107.26 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=100.3
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCCCc-EEEEeeccCccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQV 130 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v-~f~~~D~~~l~~ 130 (772)
=..+|.+.+.. ....+|||+|||+|-++..+++.. ..+++.+|++..+|+-++++...+...- .+...|+..--
T Consensus 146 GS~lLl~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v- 221 (300)
T COG2813 146 GSRLLLETLPP---DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV- 221 (300)
T ss_pred HHHHHHHhCCc---cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-
Confidence 34556666654 456699999999999999999984 5679999999999999988886665544 56666665533
Q ss_pred ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhccccccc
Q 004133 131 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFR 194 (772)
Q Consensus 131 ~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~ 194 (772)
.+ +||.|+++-.+|.=..- ......+++....+.|++||.+.++..+.......+-+.|.
T Consensus 222 -~~-kfd~IisNPPfh~G~~v--~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 222 -EG-KFDLIISNPPFHAGKAV--VHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred -cc-cccEEEeCCCccCCcch--hHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 33 99999999999854332 22336699999999999999999988766554444444443
No 134
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.90 E-value=1.5e-08 Score=102.08 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=76.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-------cccCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------VFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------~~~~~sfD 137 (772)
.++.+|||+|||+|.++..++... ..+|+++|+|+.+ ..++++++++|+.+.+ .+++++||
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 578899999999999999888762 3469999999853 1246889999988742 13567899
Q ss_pred EEEeccccccc----ccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 138 VILDKGGLDAL----MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 138 vVi~~~~l~~l----~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+|++.+..++. .+..........+++.+.++|+|||++++..+...
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~ 150 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE 150 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc
Confidence 99986543210 00000011246899999999999999998765543
No 135
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.88 E-value=9.9e-09 Score=101.84 Aligned_cols=131 Identities=16% Similarity=0.242 Sum_probs=93.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|.|.++..+....|..+|++||+++..++.|++.+....-+.++++.+|..+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--------------- 95 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--------------- 95 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC---------------
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc---------------
Confidence 56789999999999999999999998999999999999999998843322239999999865422
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 701 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 701 (772)
..+||+|+... +-. .|. ......-..|++.+++.|+|+|.|++-. .+.... +.
T Consensus 96 -------------------~~~fD~Iv~NP--P~~-~~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~-~~~~~~-~~- 148 (170)
T PF05175_consen 96 -------------------DGKFDLIVSNP--PFH-AGG--DDGLDLLRDFIEQARRYLKPGGRLFLVI-NSHLGY-ER- 148 (170)
T ss_dssp -------------------TTCEEEEEE-----SB-TTS--HCHHHHHHHHHHHHHHHEEEEEEEEEEE-ETTSCH-HH-
T ss_pred -------------------ccceeEEEEcc--chh-ccc--ccchhhHHHHHHHHHHhccCCCEEEEEe-ecCCCh-HH-
Confidence 36799999942 100 000 0011235889999999999999987644 333332 22
Q ss_pred HHHHHHhccceEEEe
Q 004133 702 ISRMKMVFNHLFCLQ 716 (772)
Q Consensus 702 ~~~l~~vF~~v~~~~ 716 (772)
.+++.|..+..+.
T Consensus 149 --~l~~~f~~~~~~~ 161 (170)
T PF05175_consen 149 --LLKELFGDVEVVA 161 (170)
T ss_dssp --HHHHHHS--EEEE
T ss_pred --HHHHhcCCEEEEE
Confidence 2788998777665
No 136
>PHA03411 putative methyltransferase; Provisional
Probab=98.87 E-value=3.5e-08 Score=103.77 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHH
Q 004133 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVV 103 (772)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~ 103 (772)
+..+++--+.|...+....-.+|....-+..++ +.. .+..+|||+|||+|.++..++.. +..+|+++|+++.|
T Consensus 27 ~~~~~~v~~~~~g~~~~~~G~FfTP~~i~~~f~---~~~---~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~a 100 (279)
T PHA03411 27 YEEKEFCYNNYHGDGLGGSGAFFTPEGLAWDFT---IDA---HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEF 100 (279)
T ss_pred cCcHHHHHHhcccccccCceeEcCCHHHHHHHH---hcc---ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 446666666665442112223444433332322 222 34579999999999999888775 23579999999999
Q ss_pred HHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccch-----------HH--HHHHHHHHHhccc
Q 004133 104 ISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGH-----------KL--GNQYLSEVKRLLK 170 (772)
Q Consensus 104 I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~-----------~~--~~~~l~ei~rvLk 170 (772)
++.++++. ++++|+++|+.++. ...+||+|+++..+.++...+... .. ..+.+..+.++|+
T Consensus 101 l~~Ar~n~----~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~ 174 (279)
T PHA03411 101 ARIGKRLL----PEAEWITSDVFEFE--SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIV 174 (279)
T ss_pred HHHHHHhC----cCCEEEECchhhhc--ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheec
Confidence 99887653 47899999999875 357899999999888764422111 00 3678899999999
Q ss_pred cCeEEEEEEcCch
Q 004133 171 SGGKFVCLTLAES 183 (772)
Q Consensus 171 pGG~~ii~~~~~~ 183 (772)
|+|.++++--+.+
T Consensus 175 p~G~~~~~yss~~ 187 (279)
T PHA03411 175 PTGSAGFAYSGRP 187 (279)
T ss_pred CCceEEEEEeccc
Confidence 9998877644433
No 137
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.86 E-value=4.7e-09 Score=106.46 Aligned_cols=103 Identities=13% Similarity=0.177 Sum_probs=78.1
Q ss_pred CeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
..++|+|||||.-+.-++.. +++|+++|+|++||+.+++.....+. ..++...++.++. -.+++.|+|++..++|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-GGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-CCCcceeeehhhhhHHh
Confidence 38999999999777777776 78899999999999988654422222 2334444555554 34899999999999999
Q ss_pred cccCccchHHHHHHHHHHHhccccCe-EEEEEEcCc
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLAE 182 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG-~~ii~~~~~ 182 (772)
+. .++++++++|+||+.| .+.+-.|.+
T Consensus 113 Fd--------le~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 113 FD--------LERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred hc--------hHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 85 4789999999999876 666666664
No 138
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.85 E-value=6.7e-08 Score=98.02 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=98.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...++|.||+|.|.+...+....|...+++||+++.+++.|++...-..-.+++++.+|+.++.....
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~------------ 83 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF------------ 83 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC------------
Confidence 45689999999999999999999999999999999999999876522112479999999999875532
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 701 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 701 (772)
....+|.|+++.-.+.+. -......++..+|++.+.+.|+|||.|.+.. ........+
T Consensus 84 ------------------~~~~~d~v~~~~pdpw~k--~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t--d~~~~~~~~ 141 (194)
T TIGR00091 84 ------------------PDGSLSKVFLNFPDPWPK--KRHNKRRITQPHFLKEYANVLKKGGVIHFKT--DNEPLFEDM 141 (194)
T ss_pred ------------------CCCceeEEEEECCCcCCC--CCccccccCCHHHHHHHHHHhCCCCEEEEEe--CCHHHHHHH
Confidence 124699999965322111 0001234667899999999999999998754 445555556
Q ss_pred HHHHHHhc
Q 004133 702 ISRMKMVF 709 (772)
Q Consensus 702 ~~~l~~vF 709 (772)
++.+.+..
T Consensus 142 ~~~~~~~~ 149 (194)
T TIGR00091 142 LKVLSEND 149 (194)
T ss_pred HHHHHhCC
Confidence 66666653
No 139
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.85 E-value=4.6e-08 Score=103.21 Aligned_cols=110 Identities=12% Similarity=0.084 Sum_probs=80.6
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-cccCCCccEEEeccccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-VFMDETFDVILDKGGLD 146 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l~ 146 (772)
..+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++++...+ .++.++|+.+.. ....++||+|+++-...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 458999999999999998875 33479999999999999987764432 589999987632 01135799999875432
Q ss_pred c------c-------------ccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 147 A------L-------------MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 147 ~------l-------------~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
- + ....++...+..+++.+.++|+|||++++..-
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 1 11112233467899999999999999997754
No 140
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.84 E-value=4e-08 Score=98.56 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=78.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..+||.||+|+|.++..+....|..+|++||+++.+++.|++.. |+ ++++++.+|+.++. .
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~---~~i~~i~~d~~~~~---~---------- 106 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL---NNVEIVNGRAEDFQ---H---------- 106 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC---CCeEEEecchhhcc---c----------
Confidence 57899999999999999888888889999999999999988764 44 35999999987751 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|+++.. . . -..+++.+.+.|+|||.+++-.
T Consensus 107 ---------------------~~~fD~I~s~~~-~----~---------~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 107 ---------------------EEQFDVITSRAL-A----S---------LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ---------------------cCCccEEEehhh-h----C---------HHHHHHHHHHhcCCCCEEEEEc
Confidence 257999998541 1 1 1578899999999999999764
No 141
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.84 E-value=1.2e-07 Score=93.75 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=94.1
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccC-CCCcEEEEeeccCc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM 128 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~-~~~v~f~~~D~~~l 128 (772)
.+++......|.. .+++.++|+|||+|.++.+++..+ ..+|+++|-++.+++..+++..+- .++++.+.+|+-+.
T Consensus 20 ~EIRal~ls~L~~---~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRP---RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCC---CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 4556555566654 789999999999999999998553 357999999999999887665432 46899999999875
Q ss_pred ccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhh
Q 004133 129 QVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 186 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~ 186 (772)
- -...+||.|+..+.- . ++.+|+.+...|||||+++.....-++..
T Consensus 97 L-~~~~~~daiFIGGg~-~----------i~~ile~~~~~l~~ggrlV~naitlE~~~ 142 (187)
T COG2242 97 L-PDLPSPDAIFIGGGG-N----------IEEILEAAWERLKPGGRLVANAITLETLA 142 (187)
T ss_pred h-cCCCCCCEEEECCCC-C----------HHHHHHHHHHHcCcCCeEEEEeecHHHHH
Confidence 3 122279999998872 2 57899999999999999998766655443
No 142
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.83 E-value=3.1e-08 Score=112.57 Aligned_cols=122 Identities=17% Similarity=0.193 Sum_probs=89.4
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc-ccCC
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV-FMDE 134 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~-~~~~ 134 (772)
+...+.. .++.+|||+|||+|..+..++..+. ..|+++|+|+.+++.+++++...+.+++++++|+.+++. +..+
T Consensus 236 ~~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 236 AATLLAP---QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHHcCC---CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccC
Confidence 3444543 5789999999999999999988742 479999999999999988886666668899999987641 2357
Q ss_pred CccEEEecccccc---cc-cCc----cch-------HHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 135 TFDVILDKGGLDA---LM-EPE----LGH-------KLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 135 sfDvVi~~~~l~~---l~-~~~----~~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+||.|+....... +. .++ ..+ ....+++..+.++|||||++++.+.+
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 8999995432211 10 000 000 12457999999999999999988754
No 143
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.83 E-value=2e-08 Score=99.43 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++... ..+++++++|+.+++ +++..||.|+++-.++
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFD-LPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCC-ccccCCCEEEECCCcc
Confidence 467899999999999999999985 4799999999999999877643 458999999999998 7777899999876554
No 144
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.82 E-value=8e-08 Score=98.11 Aligned_cols=131 Identities=13% Similarity=0.181 Sum_probs=93.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHh-hcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVRE-MKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~-~~~~~~~~~~~~~ 620 (772)
...+||.||+|.|.++..|...+|..+|++||+++.+++.|++.+....-++++++++|+.+.+.. ..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~----------- 108 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP----------- 108 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC-----------
Confidence 457899999999999999999889889999999999999999887432235799999999555443 22
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
...||+|++.. +++.......-.......+|+.+.+.|+|||+|++-. ........
T Consensus 109 --------------------~~~~D~V~~~~--~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~--~~~~~~~~ 164 (202)
T PRK00121 109 --------------------DGSLDRIYLNF--PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT--DWEGYAEY 164 (202)
T ss_pred --------------------ccccceEEEEC--CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc--CCHHHHHH
Confidence 35699999843 1110000000112345889999999999999999643 45555555
Q ss_pred HHHHHHH
Q 004133 701 VISRMKM 707 (772)
Q Consensus 701 v~~~l~~ 707 (772)
+++.+++
T Consensus 165 ~~~~~~~ 171 (202)
T PRK00121 165 MLEVLSA 171 (202)
T ss_pred HHHHHHh
Confidence 5666554
No 145
>PRK00811 spermidine synthase; Provisional
Probab=98.82 E-value=2.3e-08 Score=107.34 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=83.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc------CCCCcEEEEeeccCcccccCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSMQVFMDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~------~~~~v~f~~~D~~~l~~~~~~sfDvVi 140 (772)
.+.+||++|||+|..+..+.+. +..+|++||+++.+++.+++.+.. ..++++++.+|+.+.-....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999887 567899999999999999876532 356899999999874313467899999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
...+-.+... . .-....+++.+++.|+|||++++..
T Consensus 156 ~D~~dp~~~~-~--~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPA-E--GLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCch-h--hhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 7543222111 0 0113678999999999999998753
No 146
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.81 E-value=3.8e-08 Score=118.24 Aligned_cols=152 Identities=16% Similarity=0.051 Sum_probs=101.9
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~ 122 (772)
||-+....+..+.++. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++++...+ .+++|++
T Consensus 522 ~flDqr~~R~~~~~~~------~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~ 595 (702)
T PRK11783 522 LFLDHRPTRRMIGQMA------KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQ 595 (702)
T ss_pred ECHHHHHHHHHHHHhc------CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEE
Confidence 4555445555555554 367999999999999999999887789999999999999988875543 2589999
Q ss_pred eeccCcccccCCCccEEEecccccccccC----ccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccc-cCCc
Q 004133 123 MDMTSMQVFMDETFDVILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGW 197 (772)
Q Consensus 123 ~D~~~l~~~~~~sfDvVi~~~~l~~l~~~----~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w 197 (772)
+|+.+...-..++||+|++......-... ......+..++..+.++|+|||.+++.+... ++... ...+ ..++
T Consensus 596 ~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-~~~~~-~~~~~~~g~ 673 (702)
T PRK11783 596 ADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-GFKMD-EEGLAKLGL 673 (702)
T ss_pred ccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-cCChh-HHHHHhCCC
Confidence 99977420125689999875432211000 0011226788999999999999998776543 22221 1112 2356
Q ss_pred EEEEEEcC
Q 004133 198 KMSVHAIP 205 (772)
Q Consensus 198 ~~~~~~~~ 205 (772)
.++.....
T Consensus 674 ~~~~i~~~ 681 (702)
T PRK11783 674 KAEEITAK 681 (702)
T ss_pred eEEEEecC
Confidence 66665543
No 147
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.79 E-value=4.6e-08 Score=106.45 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=84.1
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccC
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~ 127 (772)
+.+...+.+.+.. .++.+|||+|||+|.++..+++. +. ..|+++|+++.+++.++++....+ .++.++++|+.+
T Consensus 66 p~l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 66 PSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence 3444555555544 57789999999999999999886 22 359999999999999987764433 468999999887
Q ss_pred cccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 128 MQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 128 l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.. ...++||+|++...+.. ....+.++|+|||++++..
T Consensus 143 ~~-~~~~~fD~Ii~~~g~~~-------------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GV-PEFAPYDVIFVTVGVDE-------------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cc-cccCCccEEEECCchHH-------------hHHHHHHhcCCCCEEEEEe
Confidence 65 45578999998654432 3345678999999988754
No 148
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.79 E-value=2.7e-08 Score=101.82 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=84.5
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeecc
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMT 126 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~ 126 (772)
.+.+...+.++++. .|+++|||||||+|..+..|+.. |. ..|+++|+.+..++.|+++....+ .++.++++|..
T Consensus 57 ~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~ 133 (209)
T PF01135_consen 57 APSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS 133 (209)
T ss_dssp -HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred HHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh
Confidence 35566667777775 79999999999999999998886 43 359999999999999998886544 38999999987
Q ss_pred CcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 127 SMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 127 ~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.-- -....||.|+.......++ ..+.+.|++||++++..
T Consensus 134 ~g~-~~~apfD~I~v~~a~~~ip-------------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 134 EGW-PEEAPFDRIIVTAAVPEIP-------------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GTT-GGG-SEEEEEESSBBSS---------------HHHHHTEEEEEEEEEEE
T ss_pred hcc-ccCCCcCEEEEeeccchHH-------------HHHHHhcCCCcEEEEEE
Confidence 643 3567899999988775442 35677899999999864
No 149
>PRK04457 spermidine synthase; Provisional
Probab=98.77 E-value=5.5e-08 Score=103.27 Aligned_cols=114 Identities=20% Similarity=0.204 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
++.+|||+|||+|.++..++.. +..+|+++|+++.+++.+++.+... .++++++++|+.+.-.-..++||+|+...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 4579999999999999988876 4457999999999999998876432 36799999998764202246899998643
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
++....++ .-....+++++.++|+|||++++..+..+.
T Consensus 145 ~~~~~~~~--~l~t~efl~~~~~~L~pgGvlvin~~~~~~ 182 (262)
T PRK04457 145 FDGEGIID--ALCTQPFFDDCRNALSSDGIFVVNLWSRDK 182 (262)
T ss_pred CCCCCCcc--ccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence 22110000 001368999999999999999987665543
No 150
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.77 E-value=5.6e-08 Score=110.42 Aligned_cols=124 Identities=17% Similarity=0.165 Sum_probs=88.0
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcE--EEEeeccCcccc
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMR--WRVMDMTSMQVF 131 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~--f~~~D~~~l~~~ 131 (772)
..+...+.. .++.+|||+|||+|..+..++.. +...|+++|+++.+++.++++....+..+. +..+|..+.+ +
T Consensus 228 ~~~~~~L~~---~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~-~ 303 (426)
T TIGR00563 228 QWVATWLAP---QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS-Q 303 (426)
T ss_pred HHHHHHhCC---CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc-c
Confidence 344455544 57899999999999999998876 434799999999999999888765544433 3667766554 3
Q ss_pred --cCCCccEEEec------ccccccccCc--cch-------HHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 132 --MDETFDVILDK------GGLDALMEPE--LGH-------KLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 132 --~~~sfDvVi~~------~~l~~l~~~~--~~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
..++||.|+.. |++...++-. ..+ ....++|.++.++|||||+++++|.+-
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 46789999853 3443322100 000 124689999999999999999988764
No 151
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=8.9e-08 Score=94.27 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=80.8
Q ss_pred cccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004133 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (772)
Q Consensus 44 ~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~ 123 (772)
+|-|.....+...+.......+.-.+.+|+|+|||||.++...+-.|...|+|+|+.+.+++.++++..+...++.|.++
T Consensus 21 LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~ 100 (198)
T COG2263 21 LEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVA 100 (198)
T ss_pred ceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEc
Confidence 34455545555555444433233456789999999999999999899888999999999999999888776668999999
Q ss_pred eccCcccccCCCccEEEeccccccccc
Q 004133 124 DMTSMQVFMDETFDVILDKGGLDALME 150 (772)
Q Consensus 124 D~~~l~~~~~~sfDvVi~~~~l~~l~~ 150 (772)
|+.+.. ..||.|+.+-.+.....
T Consensus 101 dv~~~~----~~~dtvimNPPFG~~~r 123 (198)
T COG2263 101 DVSDFR----GKFDTVIMNPPFGSQRR 123 (198)
T ss_pred chhhcC----CccceEEECCCCccccc
Confidence 999877 67899998888776544
No 152
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=7.8e-08 Score=96.98 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=91.0
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ 129 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~ 129 (772)
+.+...+.+.+.. .++.+|||||||+|..+.-|++..- +|+.+|..+...+.|++++...+. ++.+.++|-..--
T Consensus 58 P~~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~ 133 (209)
T COG2518 58 PHMVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW 133 (209)
T ss_pred cHHHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 4555666677765 7899999999999999999999844 799999999999999988865543 7999999998742
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
-....||.|+.......++. .+.+.||+||++++-.-
T Consensus 134 -~~~aPyD~I~Vtaaa~~vP~-------------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 -PEEAPYDRIIVTAAAPEVPE-------------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred -CCCCCcCEEEEeeccCCCCH-------------HHHHhcccCCEEEEEEc
Confidence 24589999999887776643 56778999999988653
No 153
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=1e-07 Score=108.29 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=89.9
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCccccc
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFM 132 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~ 132 (772)
.+...+.. .++.+|||+|||+|..+..++.. +...|+++|+|+.+++.+++++...+. ++++.++|+.+++.+.
T Consensus 228 ~~~~~l~~---~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~ 304 (431)
T PRK14903 228 IVPLLMEL---EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV 304 (431)
T ss_pred HHHHHhCC---CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh
Confidence 34444543 57889999999999999988875 234799999999999999888765443 5889999998865344
Q ss_pred CCCccEEEecccc---ccccc-Ccc----ch-------HHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 133 DETFDVILDKGGL---DALME-PEL----GH-------KLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 133 ~~sfDvVi~~~~l---~~l~~-~~~----~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++||.|+..... ..+.. ++. .+ ....++|..+.++|||||++++.|.+-
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 6789999863322 11111 100 00 124678999999999999999988764
No 154
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.74 E-value=9.9e-08 Score=101.51 Aligned_cols=115 Identities=18% Similarity=0.192 Sum_probs=85.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++.+|||+|||+|..+..++.. + ...|+++|+++.+++.++++....+ .++++.+.|+.+++ ...+.||+|+...
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-AAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-hhccCCCEEEEcC
Confidence 57889999999999999988875 2 2469999999999999988875544 36899999998876 4566799998532
Q ss_pred cccc---cc-cCcc----ch-------HHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 144 GLDA---LM-EPEL----GH-------KLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 144 ~l~~---l~-~~~~----~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
.... +. +++. .+ ....++|+.+.++|||||+++..+.+-
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2111 11 1100 00 123569999999999999999887653
No 155
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.73 E-value=1.3e-07 Score=106.01 Aligned_cols=130 Identities=14% Similarity=0.103 Sum_probs=92.0
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~ 122 (772)
||-+....+..+..+. ++.+|||+|||+|.++...+..|..+|+++|+|+.+++.+++++...+ .++++++
T Consensus 204 ~flDqr~~R~~~~~~~------~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~ 277 (396)
T PRK15128 204 YYLDQRDSRLATRRYV------ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 277 (396)
T ss_pred cChhhHHHHHHHHHhc------CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEE
Confidence 5555444555555543 467999999999999988776677689999999999999988776544 2689999
Q ss_pred eeccCcc-cc--cCCCccEEEecccccccccCc--cchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 123 MDMTSMQ-VF--MDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 123 ~D~~~l~-~~--~~~sfDvVi~~~~l~~l~~~~--~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+|+.+.- .+ ..++||+|++......-.... .....+..++..+.++|+|||.++..+.+
T Consensus 278 ~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 278 DDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9998752 12 246899999765432211100 00012567777889999999999987754
No 156
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.4e-07 Score=100.91 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=88.6
Q ss_pred eEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEeccccc--
Q 004133 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLD-- 146 (772)
Q Consensus 71 ~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~-- 146 (772)
+|||+|||+|.++..++.... .+|+++|+|+.+++.|++++...+ .++.+++.|+..-- .++||+|+++-..=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL---RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc---CCceeEEEeCCCCCCC
Confidence 799999999999999998843 479999999999999988876655 45566666766532 24899999765421
Q ss_pred ----------------ccccCccchHHHHHHHHHHHhccccCeEEEEEE-cCchhhhhccccccc
Q 004133 147 ----------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT-LAESHVLGLLFPKFR 194 (772)
Q Consensus 147 ----------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~-~~~~~~~~~l~~~~~ 194 (772)
++....++...+.+++.++.+.|+|||.+++.. +.+......++....
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~ 254 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTG 254 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcC
Confidence 111122333458999999999999999988754 566555555555444
No 157
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.72 E-value=1.2e-07 Score=95.36 Aligned_cols=117 Identities=10% Similarity=0.120 Sum_probs=86.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|+|.++..+....|..+|++||+++.+++.|++.+....-++++++.+|+... .
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~---~------------ 94 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE---L------------ 94 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---c------------
Confidence 3456899999999999999998888889999999999999999875221114699999986321 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
..+||+|+++.... .-..+++.+.+.|+|||.++++.+.... ...
T Consensus 95 --------------------~~~~D~v~~~~~~~-------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~--~~~ 139 (187)
T PRK08287 95 --------------------PGKADAIFIGGSGG-------------NLTAIIDWSLAHLHPGGRLVLTFILLEN--LHS 139 (187)
T ss_pred --------------------CcCCCEEEECCCcc-------------CHHHHHHHHHHhcCCCeEEEEEEecHhh--HHH
Confidence 14699999853111 1167899999999999999998754322 234
Q ss_pred HHHHHHH
Q 004133 701 VISRMKM 707 (772)
Q Consensus 701 v~~~l~~ 707 (772)
+...+++
T Consensus 140 ~~~~l~~ 146 (187)
T PRK08287 140 ALAHLEK 146 (187)
T ss_pred HHHHHHH
Confidence 4555544
No 158
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.71 E-value=2.9e-07 Score=93.65 Aligned_cols=121 Identities=13% Similarity=0.126 Sum_probs=89.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCC-CCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~-~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
....+||.+|+|+|.++..+.... +..+|++||+++.+++.|++.+.... .+++.++.+|+.+++....
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~--------- 109 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTIN--------- 109 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcC---------
Confidence 345689999999999988887654 55699999999999999987752211 3678999999988775532
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
..||+|++..... .-..+++.+.+.|+|+|.+++... ..+..
T Consensus 110 -----------------------~~~D~V~~~~~~~-------------~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~ 151 (198)
T PRK00377 110 -----------------------EKFDRIFIGGGSE-------------KLKEIISASWEIIKKGGRIVIDAI--LLETV 151 (198)
T ss_pred -----------------------CCCCEEEECCCcc-------------cHHHHHHHHHHHcCCCcEEEEEee--cHHHH
Confidence 4699999853211 116789999999999999998664 22333
Q ss_pred HHHHHHHHHh
Q 004133 699 DMVISRMKMV 708 (772)
Q Consensus 699 ~~v~~~l~~v 708 (772)
..+...+++.
T Consensus 152 ~~~~~~l~~~ 161 (198)
T PRK00377 152 NNALSALENI 161 (198)
T ss_pred HHHHHHHHHc
Confidence 4556666543
No 159
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.71 E-value=5.2e-09 Score=104.97 Aligned_cols=101 Identities=24% Similarity=0.318 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-cccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-VFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-~~~~~sfDvVi~~~~l 145 (772)
.+-.++||+|||||..+..|.+.- ..++|+|||+.|++.|.++-. -=+..++|+..+. ...++.||+|.+..+|
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~----YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGL----YDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccc----hHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 346799999999999999998873 369999999999998866531 1233444444322 1356789999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.++-. ++.++--+...|+|||.|.++.
T Consensus 199 ~YlG~-------Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 199 PYLGA-------LEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred Hhhcc-------hhhHHHHHHHhcCCCceEEEEe
Confidence 99876 6789999999999999998875
No 160
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.70 E-value=8.3e-08 Score=109.65 Aligned_cols=114 Identities=23% Similarity=0.156 Sum_probs=84.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccccCCCccEEEec-
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDK- 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~~~sfDvVi~~- 142 (772)
.++.+|||+|||+|..+..+++. +...|+++|+|+.+++.+++++...+. +++++++|+.++. ++++||+|+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcC
Confidence 57789999999999999888764 234799999999999999888755443 5899999998875 56789999852
Q ss_pred -----cccccc------ccCccc---hHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 143 -----GGLDAL------MEPELG---HKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 143 -----~~l~~l------~~~~~~---~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+++..- ..+++- .....++|.++.++|||||++++.|.+-
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 222110 000000 0113478999999999999999988764
No 161
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.3e-07 Score=97.50 Aligned_cols=120 Identities=19% Similarity=0.323 Sum_probs=96.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+|+..|.|+|+|+++|.... |..+|+.+|++++.++.|++.| |+ .+++++..+|..+.+..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v~~~~~Dv~~~~~~--------- 161 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRVTLKLGDVREGIDE--------- 161 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccceEEEeccccccccc---------
Confidence 345799999999999999999755 5579999999999999999987 55 56689999998776333
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
..||+|++|+-.+ .++++.+++.|+|||.+++-+.+- +
T Consensus 162 -------------------------~~vDav~LDmp~P---------------W~~le~~~~~Lkpgg~~~~y~P~v--e 199 (256)
T COG2519 162 -------------------------EDVDAVFLDLPDP---------------WNVLEHVSDALKPGGVVVVYSPTV--E 199 (256)
T ss_pred -------------------------cccCEEEEcCCCh---------------HHHHHHHHHHhCCCcEEEEEcCCH--H
Confidence 3699999988444 899999999999999999876543 3
Q ss_pred HHHHHHHHHHHh-ccceE
Q 004133 697 TKDMVISRMKMV-FNHLF 713 (772)
Q Consensus 697 ~~~~v~~~l~~v-F~~v~ 713 (772)
..+.++..|++. |-++-
T Consensus 200 Qv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 200 QVEKTVEALRERGFVDIE 217 (256)
T ss_pred HHHHHHHHHHhcCccchh
Confidence 445568888887 66533
No 162
>PHA03412 putative methyltransferase; Provisional
Probab=98.67 E-value=2.9e-07 Score=94.92 Aligned_cols=101 Identities=14% Similarity=0.220 Sum_probs=77.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHc----CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA----GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~----g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.+.+|||+|||+|.++..++.. +..+|+++|+++.+++.|+++. +++.|...|+.+.+ + +++||+||++-
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----~~~~~~~~D~~~~~-~-~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----PEATWINADALTTE-F-DTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----cCCEEEEcchhccc-c-cCCccEEEECC
Confidence 4679999999999999988764 2347999999999999997654 35899999998776 4 57999999988
Q ss_pred cccccccCcc-----chHHHHHHHHHHHhccccCeE
Q 004133 144 GLDALMEPEL-----GHKLGNQYLSEVKRLLKSGGK 174 (772)
Q Consensus 144 ~l~~l~~~~~-----~~~~~~~~l~ei~rvLkpGG~ 174 (772)
-+.-+..... +......+++.+.+++++|+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 8765442211 113366788999997777764
No 163
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.67 E-value=3.8e-07 Score=98.34 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=94.3
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEe-eccCc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVM-DMTSM 128 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~-D~~~l 128 (772)
+.+...+.++... +++..|||.-||||.+.....-.|. +++|+|++..|++.++.++..-+ ....+..+ |++++
T Consensus 183 P~lAR~mVNLa~v---~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 183 PRLARAMVNLARV---KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred HHHHHHHHHHhcc---ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 3455555555554 6788999999999999999888887 69999999999999987774332 34555555 99999
Q ss_pred ccccCCCccEEEeccccccccc--CccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 129 QVFMDETFDVILDKGGLDALME--PELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 129 ~~~~~~sfDvVi~~~~l~~l~~--~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+ +++.+||.|+.....---.. .+.-..++.++|+.++++||+||++++...
T Consensus 259 p-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 259 P-LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred C-CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9 99999999986433221111 111134589999999999999999998875
No 164
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.66 E-value=7.9e-08 Score=93.37 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=85.0
Q ss_pred CCCeEEEEcccccHHHHHHH-HhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~-~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
+..+||.||+|.|.+...|. ...|..++++||+++.+++.|++.+ ++ ++++++++|..+ +...-
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~---~ni~~~~~d~~~-l~~~~-------- 70 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL---DNIEFIQGDIED-LPQEL-------- 70 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS---TTEEEEESBTTC-GCGCS--------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc---cccceEEeehhc-ccccc--------
Confidence 46789999999999999999 5667889999999999999999965 55 389999999877 33210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc-HHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-GSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~-~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
...||+|+....- ..+-+ ..+|+.+.+.|+++|++++.......+
T Consensus 71 -----------------------~~~~D~I~~~~~l-----------~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 71 -----------------------EEKFDIIISNGVL-----------HHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE 116 (152)
T ss_dssp -----------------------STTEEEEEEESTG-----------GGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred -----------------------CCCeeEEEEcCch-----------hhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence 1579999985311 12222 579999999999999999887664444
Q ss_pred HH
Q 004133 697 TK 698 (772)
Q Consensus 697 ~~ 698 (772)
..
T Consensus 117 ~~ 118 (152)
T PF13847_consen 117 LP 118 (152)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 165
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.66 E-value=2.2e-07 Score=105.90 Aligned_cols=124 Identities=22% Similarity=0.224 Sum_probs=89.0
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccc--
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQV-- 130 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~-- 130 (772)
.+...+.. .++.+|||+|||+|..+..++.. + ...|+++|+++.+++.++++....+ .+++++++|+.+++.
T Consensus 243 l~~~~l~~---~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 243 LVAPLLDP---QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHhCC---CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc
Confidence 34444543 57899999999999999999876 2 2479999999999999988875544 368999999987641
Q ss_pred -ccCCCccEEEec------ccccccccCc--cch-------HHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 131 -FMDETFDVILDK------GGLDALMEPE--LGH-------KLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 131 -~~~~sfDvVi~~------~~l~~l~~~~--~~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+..++||.|+.. |++..-.+.. ..+ ....++|.++.++|||||+++..|.+-
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 235789999853 2333221100 000 114688999999999999999887553
No 166
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.66 E-value=2.3e-07 Score=106.02 Aligned_cols=122 Identities=16% Similarity=0.241 Sum_probs=87.0
Q ss_pred HHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc-cc
Q 004133 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-VF 131 (772)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~-~~ 131 (772)
.+...+.. .++.+|||+|||+|..+..+++. +...|+++|+++.+++.++++....+ .+++++++|+.++. .+
T Consensus 241 lv~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDP---KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCC---CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence 44445543 56789999999999999999875 23579999999999999988775544 35899999998863 12
Q ss_pred cCCCccEEEecccccc---cc-cCc----cch-------HHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 132 MDETFDVILDKGGLDA---LM-EPE----LGH-------KLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~~---l~-~~~----~~~-------~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
+ ++||+|+....... +. .++ ..+ .....+++.+.++|||||+++..+.+
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3 78999986532211 10 000 000 01356899999999999999976644
No 167
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.65 E-value=5.3e-07 Score=95.93 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=103.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.+|.|.|..+.++....++ ..|++||+++..++.+++.+....-.+++++.+|+..+-..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~------------- 137 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA------------- 137 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh-------------
Confidence 4468999999999999998887753 58999999999999999887321124689999999775221
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC--------------CcHHHHHHHHHccCCCcEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQGLF 686 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--------------~~~~fl~~~~~~L~~~Gil 686 (772)
...||+|++|+-.+. .|+-...+.. ...++|+.+.+.|+|||.+
T Consensus 138 --------------------~~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~l 195 (264)
T TIGR00446 138 --------------------VPKFDAILLDAPCSG--EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVL 195 (264)
T ss_pred --------------------ccCCCEEEEcCCCCC--CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 135999999984431 2322222221 3467999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHhccceE
Q 004133 687 IVNLVSRSQATKDMVISRMKMVFNHLF 713 (772)
Q Consensus 687 v~Nl~~~~~~~~~~v~~~l~~vF~~v~ 713 (772)
+.-..+.+.+..+.+++.+.+.++...
T Consensus 196 vYstcs~~~~Ene~vv~~~l~~~~~~~ 222 (264)
T TIGR00446 196 VYSTCSLEPEENEAVVDYLLEKRPDVV 222 (264)
T ss_pred EEEeCCCChHHHHHHHHHHHHhCCCcE
Confidence 998878888888889999988877644
No 168
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.64 E-value=2.9e-07 Score=93.48 Aligned_cols=105 Identities=19% Similarity=0.141 Sum_probs=81.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.+|+|.|.++..+....|..+|++||+||.+++.|++++....-++++++.+|+.+.+....
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~------------ 107 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA------------ 107 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC------------
Confidence 44689999999999999888877888999999999999999987521112469999999977544322
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
..+|.|++|... . -..+++.+.+.|+|||.|+++...
T Consensus 108 --------------------~~~d~v~~~~~~-----~---------~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 108 --------------------PAPDRVCIEGGR-----P---------IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --------------------CCCCEEEEECCc-----C---------HHHHHHHHHHhcCCCeEEEEEeec
Confidence 336778875311 0 168999999999999999998764
No 169
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.63 E-value=2.5e-07 Score=97.80 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=79.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.||+|.|.++..|...+|..+|++||++|.+++.|++. +++++.+|+.++. .
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~---~----------- 86 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK---P----------- 86 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC---C-----------
Confidence 456799999999999999999998888999999999999999863 4788899986541 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
...||+|++..-- .-+ | -...+++.+.+.|+|||.+++++..
T Consensus 87 --------------------~~~fD~v~~~~~l----~~~--~----d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 87 --------------------KPDTDVVVSNAAL----QWV--P----EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred --------------------CCCceEEEEehhh----hhC--C----CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 2569999983211 111 1 1277999999999999999998754
No 170
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.62 E-value=6.8e-07 Score=96.08 Aligned_cols=116 Identities=16% Similarity=0.251 Sum_probs=84.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.+.+||.+|+|+|+++..+....|..+|++||+++.++++|++..... -+++++++.+|..+.+ .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~---~----------- 186 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL---P----------- 186 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc---C-----------
Confidence 346899999999999999999999899999999999999999987321 1468999999986543 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCC--CCCC-----CcCCcCC--------CcHHHHHHHHHccCCCcE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS--SSGM-----TCPAADF--------VEGSFLLTVKDALSEQGL 685 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~--~~g~-----s~Pp~~f--------~~~~fl~~~~~~L~~~Gi 685 (772)
..+||+|+.|---... ...+ ..|...+ .-..++..+.+.|+|||.
T Consensus 187 --------------------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 187 --------------------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred --------------------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 2469999986310000 0001 0111111 125688999999999999
Q ss_pred EEEEec
Q 004133 686 FIVNLV 691 (772)
Q Consensus 686 lv~Nl~ 691 (772)
+++.+.
T Consensus 247 l~~e~g 252 (284)
T TIGR03533 247 LVVEVG 252 (284)
T ss_pred EEEEEC
Confidence 999885
No 171
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.62 E-value=9.2e-07 Score=87.51 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=97.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHh---cCCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY---FGFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~---Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+..+++.||.|+|+++..+....|..+|+++|-|++.++..++. ||+ +++.++.+||-++|.+.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~---~n~~vv~g~Ap~~L~~~--------- 100 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV---DNLEVVEGDAPEALPDL--------- 100 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC---CcEEEEeccchHhhcCC---------
Confidence 344689999999999999988888999999999999999998866 574 78999999999998764
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
..+|.||+-- . .++ ++.|+.+..+|+++|.+|+|.+.-...
T Consensus 101 ------------------------~~~daiFIGG----g-~~i---------~~ile~~~~~l~~ggrlV~naitlE~~- 141 (187)
T COG2242 101 ------------------------PSPDAIFIGG----G-GNI---------EEILEAAWERLKPGGRLVANAITLETL- 141 (187)
T ss_pred ------------------------CCCCEEEECC----C-CCH---------HHHHHHHHHHcCcCCeEEEEeecHHHH-
Confidence 2599999922 1 233 889999999999999999999765433
Q ss_pred HHHHHHHHHHhcc-ceEEEee
Q 004133 698 KDMVISRMKMVFN-HLFCLQL 717 (772)
Q Consensus 698 ~~~v~~~l~~vF~-~v~~~~~ 717 (772)
...++.+++.=- ++..+.+
T Consensus 142 -~~a~~~~~~~g~~ei~~v~i 161 (187)
T COG2242 142 -AKALEALEQLGGREIVQVQI 161 (187)
T ss_pred -HHHHHHHHHcCCceEEEEEe
Confidence 233555544322 5555543
No 172
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.61 E-value=6e-07 Score=95.79 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=99.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.+|+|.|.++..+...+|..+++++|+++.+++.|++.+......+++++.+|..+.+.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~-------------- 172 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP-------------- 172 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--------------
Confidence 345789999999999999999999989999999999999999999762234679999998743211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCC--CC------CcCCcCCC--------cHHHHHHHHHccCCCc
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS--GM------TCPAADFV--------EGSFLLTVKDALSEQG 684 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~--g~------s~Pp~~f~--------~~~fl~~~~~~L~~~G 684 (772)
..+||+|+.+.--..... .+ ..|...+. -..+++.+.+.|+|||
T Consensus 173 --------------------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG 232 (275)
T PRK09328 173 --------------------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGG 232 (275)
T ss_pred --------------------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCC
Confidence 257999998531110000 00 01112222 2568888899999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHH-hccceEEEeecCCceEEEEEe
Q 004133 685 LFIVNLVSRSQATKDMVISRMKM-VFNHLFCLQLEEDVNLVLFGL 728 (772)
Q Consensus 685 ilv~Nl~~~~~~~~~~v~~~l~~-vF~~v~~~~~~~~~N~vl~a~ 728 (772)
.+++....... ..+...+++ -|..+..+.--.+.++++++.
T Consensus 233 ~l~~e~g~~~~---~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 233 WLLLEIGYDQG---EAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred EEEEEECchHH---HHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 99997633222 233344433 355555444233456666653
No 173
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.61 E-value=2e-06 Score=89.34 Aligned_cols=105 Identities=10% Similarity=0.123 Sum_probs=78.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+.+.. |..+|++||++|.+++.|++.+.-..-++++++.+|+.++- .
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~----------- 110 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--F----------- 110 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--C-----------
Confidence 345799999999999999888775 56799999999999999998863222257999999986531 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
...+||+|++...-. .+.. ...+|+.+.+.|+|||.+++
T Consensus 111 --------------------~~~~fD~V~~~~~l~----~~~~------~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 111 --------------------DDNSFDYVTIGFGLR----NVPD------YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred --------------------CCCCccEEEEecccc----cCCC------HHHHHHHHHHHcCcCeEEEE
Confidence 135799999743111 1111 25789999999999999886
No 174
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.60 E-value=7.2e-07 Score=101.93 Aligned_cols=135 Identities=9% Similarity=0.112 Sum_probs=89.7
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCc----c
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM----Q 129 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l----~ 129 (772)
..+..++.. .++.+|||+|||+|.++..++..+ ..|+|+|+|+.|++.|++++...+ .+++|.++|+.+. +
T Consensus 287 ~~vl~~l~~---~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 287 ARALEWLDP---QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHhcC---CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344444443 467899999999999999999886 579999999999999988765433 3699999999753 2
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCC
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 206 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~ 206 (772)
+.+++||+|+....-.- ....++.+.+ ++|++.+++. .....+.+.+......+|.+.-....+
T Consensus 363 -~~~~~fD~Vi~dPPr~g----------~~~~~~~l~~-~~~~~ivyvS-Cnp~tlaRDl~~L~~~gY~l~~i~~~D 426 (443)
T PRK13168 363 -WALGGFDKVLLDPPRAG----------AAEVMQALAK-LGPKRIVYVS-CNPATLARDAGVLVEAGYRLKRAGMLD 426 (443)
T ss_pred -hhcCCCCEEEECcCCcC----------hHHHHHHHHh-cCCCeEEEEE-eChHHhhccHHHHhhCCcEEEEEEEec
Confidence 44578999986432211 2345555555 5787765544 444444444333323466665544433
No 175
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.60 E-value=2.5e-07 Score=96.98 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=82.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+..+|||||+|+|.++..+++. +.-+++..|. |.+++.+++ ..+++++.+|+. -+ +|. +|+++.+++|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~~-~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-DP-LPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-TC-CSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-hh-hcc--ccceeeehhh
Confidence 45579999999999999999887 4447999998 778888866 568999999999 45 565 9999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccC--eEEEEEEcC
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSG--GKFVCLTLA 181 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpG--G~~ii~~~~ 181 (772)
|...+++ ...+|+++++.|+|| |++++++..
T Consensus 169 h~~~d~~-----~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 169 HDWSDED-----CVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GGS-HHH-----HHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhcchHH-----HHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9987654 789999999999999 999998754
No 176
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.60 E-value=3.7e-07 Score=92.51 Aligned_cols=148 Identities=16% Similarity=0.137 Sum_probs=96.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
...+.||.|||-|+.+..+.-.-|..|..+|..+..++.|++....... -.++.+.-+.++. .+..+||+|++.+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~-P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT-PEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc-CCCCcEeEEEehHhhc
Confidence 4579999999999999888666688999999999999999877654333 3678899999887 4567999999999999
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh-----------hh---hcccccc-cCCcEEEEEEcCCCCCCC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH-----------VL---GLLFPKF-RFGWKMSVHAIPQKSSSE 211 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~-----------~~---~~l~~~~-~~~w~~~~~~~~~~~~~~ 211 (772)
|+.+.+ ..++|+.+...|+|||.+++-...... +. +.+.+-| ..++.+......... ++
T Consensus 134 hLTD~d-----lv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~f-P~ 207 (218)
T PF05891_consen 134 HLTDED-----LVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGF-PK 207 (218)
T ss_dssp GS-HHH-----HHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT---T
T ss_pred cCCHHH-----HHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCC-Cc
Confidence 998865 899999999999999999884322110 00 0122222 236666555544322 34
Q ss_pred CCcceEEEEEE
Q 004133 212 PSLQTFMVVAD 222 (772)
Q Consensus 212 ~~l~~f~~~~~ 222 (772)
.-+|+++|..+
T Consensus 208 ~L~pV~myaLr 218 (218)
T PF05891_consen 208 ELYPVRMYALR 218 (218)
T ss_dssp TS-EEEEEEEE
T ss_pred cceEEEEEEeC
Confidence 67888888653
No 177
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.59 E-value=3.3e-07 Score=97.86 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
.+.+||++|||+|.++..+.+.+ ..+++++|+++.+++.+++.+.. ..++++++.+|..+.-....++||+|+.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34599999999999998888874 56899999999999999876532 2357888888876632123578999997
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
......- ... .-....+++.+.++|+|||++++..
T Consensus 152 D~~~~~~-~~~--~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVG-PAE--TLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCC-ccc--chhHHHHHHHHHHHhCCCcEEEEcC
Confidence 5542211 110 0114688999999999999999863
No 178
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.58 E-value=9.3e-07 Score=100.48 Aligned_cols=138 Identities=13% Similarity=0.191 Sum_probs=105.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+|.|.|..+..+....+ ..+|+++|+++..++.+++.+ |+ .+++++.+|+..+-...
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~~~--------- 304 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTEYV--------- 304 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhhhh---------
Confidence 446899999999999998888763 469999999999999999886 54 35899999998763221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC--------------CcHHHHHHHHHccCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQ 683 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--------------~~~~fl~~~~~~L~~~ 683 (772)
..+||.|++|+-.+. .|+..-.++. +..+.|..+.+.|+||
T Consensus 305 -----------------------~~~fD~Vl~DaPCsg--~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 305 -----------------------QDTFDRILVDAPCTS--LGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred -----------------------hccCCEEEECCCCCC--CccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 246999999985542 2332222221 3577899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhccceEEEe
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQ 716 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~ 716 (772)
|.+++-..+..++..+.++..+-+-++.....+
T Consensus 360 G~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~ 392 (431)
T PRK14903 360 GILLYSTCTVTKEENTEVVKRFVYEQKDAEVID 392 (431)
T ss_pred CEEEEEECCCChhhCHHHHHHHHHhCCCcEEec
Confidence 999999988888888888888877676654333
No 179
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.58 E-value=8.3e-07 Score=96.41 Aligned_cols=147 Identities=14% Similarity=0.197 Sum_probs=97.2
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.+||.+|+|.|+++..+...+|..+|++||+++.++++|++..... ..++++++.+|..+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~---------------- 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP---------------- 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----------------
Confidence 6899999999999999999999999999999999999999987321 14679999999866431
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCC-CCCC-CCCC-----CcCCcCCC--------cHHHHHHHHHccCCCcEEE
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPDS-SSGM-----TCPAADFV--------EGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~-~~d~-~~g~-----s~Pp~~f~--------~~~fl~~~~~~L~~~Gilv 687 (772)
..+||+|+.+-- .+.. ...+ ..|...+. -..+++.+.+.|+|||.++
T Consensus 199 ------------------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 199 ------------------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred ------------------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 146999998521 0000 0000 11222221 2578899999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEecC
Q 004133 688 VNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSS 730 (772)
Q Consensus 688 ~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~~ 730 (772)
+.+... .. .+.+.+.. . ....+....+.-.++++..+
T Consensus 261 ~E~g~~-~~---~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 297 (307)
T PRK11805 261 VEVGNS-RV---HLEEAYPD-V-PFTWLEFENGGDGVFLLTRE 297 (307)
T ss_pred EEECcC-HH---HHHHHHhh-C-CCEEEEecCCCceEEEEEHH
Confidence 987432 22 22333332 1 12234444555666666644
No 180
>PLN02366 spermidine synthase
Probab=98.57 E-value=4.9e-07 Score=97.95 Aligned_cols=109 Identities=17% Similarity=0.227 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCcc-cccCCCccEE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQ-VFMDETFDVI 139 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l~-~~~~~sfDvV 139 (772)
..+.+||++|||.|.++..+++.. ..+|+.+|+++.+++.+++.+.. ..++++++.+|+...- ..+++.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 356899999999999999998873 46799999999999999886532 2468999999986542 1235789999
Q ss_pred EecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 140 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 140 i~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+....-..... ..-....+++.++++|+|||+++..
T Consensus 170 i~D~~dp~~~~---~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPA---QELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCch---hhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 97443221110 0011467899999999999999763
No 181
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.57 E-value=5.5e-07 Score=95.30 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=81.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|....|..+|++||+++.+++.|++.+ ++++++.+|+.++. .
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~---~----------- 90 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ---P----------- 90 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC---C-----------
Confidence 3457899999999999999999888889999999999999999885 35889999987652 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
..+||+|+....- ..+ + -...+|+.+.+.|+|||.+++.+..
T Consensus 91 --------------------~~~fD~v~~~~~l----~~~---~---d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 91 --------------------PQALDLIFANASL----QWL---P---DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred --------------------CCCccEEEEccCh----hhC---C---CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 2479999974211 111 0 1368999999999999999998643
No 182
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.57 E-value=4.2e-07 Score=94.99 Aligned_cols=112 Identities=16% Similarity=0.024 Sum_probs=83.1
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc-
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM- 128 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l- 128 (772)
..++..++.. .++.+|||+|||+|..+..++.. +..+|+++|+++.+++.|++++...+ .+++++.+|+.+.
T Consensus 57 g~~L~~l~~~---~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 57 GLFLSMLVKI---MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHHH---hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH
Confidence 3344444443 45789999999999988877764 34579999999999999988876544 3689999999874
Q ss_pred ccc----cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 129 QVF----MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 129 ~~~----~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+.+ +.++||+|+... -. ..+..+++.+.++|+|||.+++-
T Consensus 134 ~~l~~~~~~~~fD~VfiDa----~k------~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFVDA----DK------PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHhCCCCCCCCEEEECC----CH------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 111 246899998632 11 12678999999999999987764
No 183
>PRK01581 speE spermidine synthase; Validated
Probab=98.56 E-value=4.5e-07 Score=99.01 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHH--h------ccCCCCcEEEEeeccCcccccCCCccE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRR--N------VRDRSDMRWRVMDMTSMQVFMDETFDV 138 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~--~------~~~~~~v~f~~~D~~~l~~~~~~sfDv 138 (772)
.+.+||++|||+|..+..+.+.+ ..+|++||+++.|++.|++. + .-..++++++.+|+.+.-....+.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 45799999999999998888863 46899999999999999751 1 113568999999999842134578999
Q ss_pred EEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 139 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
|+.... +.... ....-....+++.+++.|+|||++++..-
T Consensus 230 IIvDl~-DP~~~-~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 230 IIIDFP-DPATE-LLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEcCC-Ccccc-chhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 997632 11100 00001136789999999999999988753
No 184
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.56 E-value=1.3e-06 Score=97.08 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=92.1
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC---CCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg---~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.+||.||+|.|.++..+....|..+|++||+++.+++.|++.+. .....+++++.+|+...+ .
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~---~----------- 295 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---E----------- 295 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC---C-----------
Confidence 58999999999999999999999999999999999999998873 211247899999986532 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
..+||+|+++ .+-.. +.. ... -....++..++++|+|||.|.+=. .+...
T Consensus 296 --------------------~~~fDlIlsN--PPfh~-~~~-~~~-~ia~~l~~~a~~~LkpGG~L~iV~-nr~l~---- 345 (378)
T PRK15001 296 --------------------PFRFNAVLCN--PPFHQ-QHA-LTD-NVAWEMFHHARRCLKINGELYIVA-NRHLD---- 345 (378)
T ss_pred --------------------CCCEEEEEEC--cCccc-Ccc-CCH-HHHHHHHHHHHHhcccCCEEEEEE-ecCcC----
Confidence 2469999993 22110 100 011 124678999999999999887642 34333
Q ss_pred HHHHHHHhccceEEE
Q 004133 701 VISRMKMVFNHLFCL 715 (772)
Q Consensus 701 v~~~l~~vF~~v~~~ 715 (772)
....|++.|..+..+
T Consensus 346 y~~~L~~~fg~~~~v 360 (378)
T PRK15001 346 YFHKLKKIFGNCTTI 360 (378)
T ss_pred HHHHHHHHcCCceEE
Confidence 346677789877554
No 185
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.56 E-value=4.1e-07 Score=93.79 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=77.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++.+|....+ ..+|++||++|.+++.|++.+.-..-++++++.+|+.+....
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~------------ 143 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP------------ 143 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc------------
Confidence 3457999999999999999988865 357999999999999999887322225799999998654211
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
...||+|+++.... .....+.+.|+|||.+++.+.
T Consensus 144 ---------------------~~~fD~Ii~~~~~~----------------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 144 ---------------------LAPYDRIYVTAAGP----------------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ---------------------cCCCCEEEEcCCcc----------------cccHHHHHhcCcCcEEEEEEc
Confidence 24699999964221 123457788999999999764
No 186
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.55 E-value=5.8e-07 Score=95.13 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=82.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..+.+||.||+|.|.++..|.... .+|++||+++.+++.|++...-. ..++++++.+|..+.....
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~----------- 109 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL----------- 109 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-----------
Confidence 345799999999999999998863 58999999999999999886311 2467999999998763221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCCh
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 695 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 695 (772)
...||+|++.. .-..+..| ..+|+.+.+.|+|||++++-.+..+.
T Consensus 110 ---------------------~~~fD~V~~~~----vl~~~~~~------~~~l~~~~~~LkpgG~l~i~~~n~~~ 154 (255)
T PRK11036 110 ---------------------ETPVDLILFHA----VLEWVADP------KSVLQTLWSVLRPGGALSLMFYNANG 154 (255)
T ss_pred ---------------------CCCCCEEEehh----HHHhhCCH------HHHHHHHHHHcCCCeEEEEEEECccH
Confidence 25799999732 11111112 57899999999999999876655543
No 187
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.55 E-value=1.4e-06 Score=95.26 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=61.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~ 142 (772)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.++++....+ .+++|+++|+.++.....+.||+|+..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 46899999999999999999987 479999999999999988775444 369999999987641134579999875
No 188
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.55 E-value=4.5e-07 Score=92.80 Aligned_cols=110 Identities=12% Similarity=0.208 Sum_probs=78.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|||.|+..+++.. .+|+++|+++..+++|+.|---. .-.+........+ ..
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~-gv~i~y~~~~~ed----l~------------ 119 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALES-GVNIDYRQATVED----LA------------ 119 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhc-cccccchhhhHHH----HH------------
Confidence 45799999999999999999885 79999999999999999886210 0112222232222 22
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
..+.+||+|++ -+.-.-+.-| ..|++.|.+.++|||++++-.+.|+...
T Consensus 120 -----------------~~~~~FDvV~c----mEVlEHv~dp------~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 120 -----------------SAGGQFDVVTC----MEVLEHVPDP------ESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred -----------------hcCCCccEEEE----hhHHHccCCH------HHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 01368999986 2211112223 6799999999999999999888887554
No 189
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.54 E-value=2.8e-07 Score=93.00 Aligned_cols=132 Identities=18% Similarity=0.225 Sum_probs=103.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.+..+||....|-|..+....+.. ..+|..||-||.|+++|+-+- ++ .+.+++++.||+.+++++..
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~-------- 202 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFD-------- 202 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCC--------
Confidence 456799999999998877666553 238999999999999997654 33 24489999999999999976
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC----
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR---- 693 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~---- 693 (772)
+..||+||.|- +- -. -..++++++|++.+.+.|++||-+.--+-.+
T Consensus 203 -----------------------D~sfDaIiHDP--PR--fS---~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry 252 (287)
T COG2521 203 -----------------------DESFDAIIHDP--PR--FS---LAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY 252 (287)
T ss_pred -----------------------ccccceEeeCC--Cc--cc---hhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc
Confidence 57899999954 21 11 2458999999999999999999988666433
Q ss_pred -ChhHHHHHHHHHHHh-ccce
Q 004133 694 -SQATKDMVISRMKMV-FNHL 712 (772)
Q Consensus 694 -~~~~~~~v~~~l~~v-F~~v 712 (772)
.......|.++|+++ |..|
T Consensus 253 rG~d~~~gVa~RLr~vGF~~v 273 (287)
T COG2521 253 RGLDLPKGVAERLRRVGFEVV 273 (287)
T ss_pred ccCChhHHHHHHHHhcCceee
Confidence 345678899999988 5433
No 190
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.54 E-value=7.6e-07 Score=93.49 Aligned_cols=117 Identities=12% Similarity=0.183 Sum_probs=83.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.+|+|+|.++..+....|..+++++|+++.+++.|++.+....-++++++.+|+.+.+ .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~------------ 151 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---P------------ 151 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---c------------
Confidence 4468999999999999999999898899999999999999998863222247999999986632 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCC--CCC------cCCcCC--------CcHHHHHHHHHccCCCcE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS--GMT------CPAADF--------VEGSFLLTVKDALSEQGL 685 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~--g~s------~Pp~~f--------~~~~fl~~~~~~L~~~Gi 685 (772)
..+||+|+.+.--..... .+. .|...+ .-..+++.+.+.|+|||.
T Consensus 152 -------------------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~ 212 (251)
T TIGR03534 152 -------------------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGW 212 (251)
T ss_pred -------------------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCE
Confidence 257999998531100000 000 000000 114788999999999999
Q ss_pred EEEEecC
Q 004133 686 FIVNLVS 692 (772)
Q Consensus 686 lv~Nl~~ 692 (772)
+++....
T Consensus 213 ~~~~~~~ 219 (251)
T TIGR03534 213 LLLEIGY 219 (251)
T ss_pred EEEEECc
Confidence 9998743
No 191
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.4e-07 Score=93.44 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=86.6
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCC
Q 004133 514 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKS 593 (772)
Q Consensus 514 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~r 593 (772)
++..+|..+++..++-. ....+||.||.|.|..+..|.+... +|.+||+++...+.|++.+.--.-.+
T Consensus 54 tis~P~~vA~m~~~L~~----------~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~n 121 (209)
T COG2518 54 TISAPHMVARMLQLLEL----------KPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYEN 121 (209)
T ss_pred eecCcHHHHHHHHHhCC----------CCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence 56667777766543321 4568999999999999999999874 89999999999999999882111234
Q ss_pred eEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHH
Q 004133 594 LKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFL 673 (772)
Q Consensus 594 l~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl 673 (772)
+.|+++||..-... ...||.|++-+-... .|..|
T Consensus 122 V~v~~gDG~~G~~~---------------------------------~aPyD~I~Vtaaa~~-------vP~~L------ 155 (209)
T COG2518 122 VTVRHGDGSKGWPE---------------------------------EAPYDRIIVTAAAPE-------VPEAL------ 155 (209)
T ss_pred eEEEECCcccCCCC---------------------------------CCCcCEEEEeeccCC-------CCHHH------
Confidence 99999999775333 256999999664432 24433
Q ss_pred HHHHHccCCCcEEEEEec
Q 004133 674 LTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 674 ~~~~~~L~~~Gilv~Nl~ 691 (772)
.+.|++||.+++-+-
T Consensus 156 ---l~QL~~gGrlv~PvG 170 (209)
T COG2518 156 ---LDQLKPGGRLVIPVG 170 (209)
T ss_pred ---HHhcccCCEEEEEEc
Confidence 345999999998775
No 192
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.53 E-value=3.4e-07 Score=92.88 Aligned_cols=107 Identities=23% Similarity=0.299 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe-----------------------
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM----------------------- 123 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~----------------------- 123 (772)
.+..+|||||-+|.++..+++. |...|.|+||.+..|+.|++... ....+++.+.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r-~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR-FPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc-ccccccccccCCCcccccccccccccccccccc
Confidence 4579999999999999999997 77789999999999999987652 2212222111
Q ss_pred ---------------------eccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 124 ---------------------DMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 124 ---------------------D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+.+ +....||+|+|-.+--|+.- ..++.-+..+|+.|.++|.|||++++--
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~---~~~~~fDiIlcLSiTkWIHL-NwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLD---MIQPEFDIILCLSITKWIHL-NWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccCCcchhcccccEEEecchhhh---hccccccEEEEEEeeeeEec-ccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 1221 34578999998665444332 1122338999999999999999999863
No 193
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.53 E-value=5.8e-07 Score=92.50 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=76.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.||+|+|.++..+.+..+ ..+|++||++|.+++.|++.+....-++++++.+|+.....
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~-------------- 141 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE-------------- 141 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------------
Confidence 457899999999999998888764 46999999999999999998732223579999999865311
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
....||+|+++.... +..+.+.+.|+|||.+++.+
T Consensus 142 -------------------~~~~fD~I~~~~~~~----------------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 142 -------------------ENAPYDRIYVTAAGP----------------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred -------------------cCCCcCEEEECCCcc----------------cchHHHHHhhCCCcEEEEEE
Confidence 125699999965322 11235566899999999976
No 194
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.53 E-value=4.5e-07 Score=98.78 Aligned_cols=108 Identities=17% Similarity=0.220 Sum_probs=82.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.||+|+|.+...|... +.+|++||+++.+++.|++++... ...+++++.+|+.++-..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~------------- 195 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE------------- 195 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc-------------
Confidence 3458999999999998888763 468999999999999999987542 235799999998665211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
..+||+|+. .+...-+..| ..||+.+++.|+|||.+++..+.+.
T Consensus 196 --------------------~~~FD~Vi~----~~vLeHv~d~------~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 196 --------------------GRKFDAVLS----LEVIEHVANP------AEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred --------------------cCCCCEEEE----hhHHHhcCCH------HHHHHHHHHHcCCCcEEEEEECCcC
Confidence 357999986 1111111112 6899999999999999999887665
No 195
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.53 E-value=1.6e-06 Score=95.96 Aligned_cols=131 Identities=13% Similarity=0.153 Sum_probs=99.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+.+|.||+|.|.....++...|...+.+||+++.+++.|.+......-++++++.+|+..++...+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~----------- 189 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP----------- 189 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC-----------
Confidence 345689999999999999999999999999999999999999877633222569999999998765443
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
+..+|.|++- -+|+... .+...++...|++.+++.|+|||.+.+.. .+..+...
T Consensus 190 --------------------~~s~D~I~ln--FPdPW~K--krHRRlv~~~fL~e~~RvLkpGG~l~l~T--D~~~y~~~ 243 (390)
T PRK14121 190 --------------------SNSVEKIFVH--FPVPWDK--KPHRRVISEDFLNEALRVLKPGGTLELRT--DSELYFEF 243 (390)
T ss_pred --------------------CCceeEEEEe--CCCCccc--cchhhccHHHHHHHHHHHcCCCcEEEEEE--ECHHHHHH
Confidence 3679999983 3443211 12345778999999999999999998754 55566565
Q ss_pred HHHHHHHh
Q 004133 701 VISRMKMV 708 (772)
Q Consensus 701 v~~~l~~v 708 (772)
+++.+.+.
T Consensus 244 ~~e~~~~~ 251 (390)
T PRK14121 244 SLELFLKL 251 (390)
T ss_pred HHHHHHhC
Confidence 56665544
No 196
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.52 E-value=1.2e-06 Score=93.22 Aligned_cols=111 Identities=11% Similarity=0.070 Sum_probs=81.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCC---CCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~---~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.||+|+|.++..|.+.+ |..+|++||+++.|++.|++..... ..++++++.+|+.+. .
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l----p------- 140 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL----P------- 140 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC----C-------
Confidence 345789999999999999888775 5579999999999999998765321 135799999997543 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
..+..||+|++-.-- ..+. --..+|+++.+.|+|||.|++--+...
T Consensus 141 ----------------------~~~~sfD~V~~~~~l----~~~~------d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 141 ----------------------FDDCYFDAITMGYGL----RNVV------DRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred ----------------------CCCCCEeEEEEeccc----ccCC------CHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 123679999872211 1111 127899999999999999887655543
No 197
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.52 E-value=6e-07 Score=94.56 Aligned_cols=102 Identities=11% Similarity=0.169 Sum_probs=77.5
Q ss_pred CCCCeEEEEcccccHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHE--CMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~--~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|+|.+...|.. ..|..++++||++|.|++.|++.+.- ....+++++.+|..++ .
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~----~-------- 122 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI----A-------- 122 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC----C--------
Confidence 3457899999999998887877 35788999999999999999998732 2245899999997553 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC----cHHHHHHHHHccCCCcEEEEE
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV----EGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~----~~~fl~~~~~~L~~~Gilv~N 689 (772)
...+|+|++-. .-+++ -..+++.+.+.|+|||.|++-
T Consensus 123 -----------------------~~~~D~vv~~~------------~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 123 -----------------------IENASMVVLNF------------TLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred -----------------------CCCCCEEehhh------------HHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 13488877521 11122 257999999999999999874
No 198
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.52 E-value=4.7e-07 Score=97.13 Aligned_cols=99 Identities=20% Similarity=0.189 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+..|||+|||+|.++..-++.|.++|+++|.|.-+ +.|.+....+.. -++++.+.+.++. +|-++.|+|++-++-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-LPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-cCccceeEEeehhhh
Confidence 578999999999999999999999999999999966 677666654433 4899999999997 888999999998887
Q ss_pred cccccCccchHHHHHHHHHHH----hccccCeEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVK----RLLKSGGKFV 176 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~----rvLkpGG~~i 176 (772)
.++.- +.+|..+. +.|+|||.++
T Consensus 138 y~Ll~--------EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLY--------ESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHH--------hhhhhhhhhhhhhccCCCceEc
Confidence 77643 45665554 8999999875
No 199
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.51 E-value=1.3e-06 Score=94.07 Aligned_cols=148 Identities=14% Similarity=0.210 Sum_probs=98.7
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.+||.+|+|+|+++..+...+|..+|++||+++.++++|++..... ..++++++.+|..+.+ .
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~---~------------- 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL---A------------- 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC---c-------------
Confidence 6899999999999999999999889999999999999999886321 2357999999976532 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC--CC-----CCcCCcCC--------CcHHHHHHHHHccCCCcEEE
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SG-----MTCPAADF--------VEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~--~g-----~s~Pp~~f--------~~~~fl~~~~~~L~~~Gilv 687 (772)
..+||+|+.+----... .. ...|...+ .-..++..+.+.|+|||+++
T Consensus 180 ------------------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 180 ------------------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred ------------------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 13699999852100000 00 01122222 23568888999999999999
Q ss_pred EEecCCChhHHHHHHHHHHH--hccceEEEeecCCceEEEEEe
Q 004133 688 VNLVSRSQATKDMVISRMKM--VFNHLFCLQLEEDVNLVLFGL 728 (772)
Q Consensus 688 ~Nl~~~~~~~~~~v~~~l~~--vF~~v~~~~~~~~~N~vl~a~ 728 (772)
+.+...... .+.+.+.. -|..+..++--.+..+++++.
T Consensus 242 ~e~g~~q~~---~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 242 CEIGNWQQK---SLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred EEECccHHH---HHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 988543222 33333442 355555544344566777764
No 200
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.51 E-value=5.1e-07 Score=91.48 Aligned_cols=106 Identities=22% Similarity=0.243 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCCchhH----HHHHHc-----C-CCeEEEEeCCHHHHHHHHHH-----------------h--ccCC---
Q 004133 68 PPPQILVPGCGNSRLS----EHLYDA-----G-FHGITNVDFSKVVISDMLRR-----------------N--VRDR--- 115 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls----~~La~~-----g-~~~V~gvDiS~~~I~~a~~~-----------------~--~~~~--- 115 (772)
+..+|+..||++|.-. ..+.+. + .-+|+|+|+|+.+|+.|++- + ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5689999999999644 333341 2 12699999999999999742 1 0001
Q ss_pred -------CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 116 -------SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 116 -------~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..++|.+.|+.+.+ .+.+.||+|+|.++|-++..+. ..++++.+++.|+|||++++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~-~~~~~fD~I~CRNVlIYF~~~~-----~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPD-PPFGRFDLIFCRNVLIYFDPET-----QQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------EEEEEE-SSGGGS-HHH-----HHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCC-cccCCccEEEecCEEEEeCHHH-----HHHHHHHHHHHcCCCCEEEEec
Confidence 36899999999943 4678999999999999996543 7899999999999999998864
No 201
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.49 E-value=7e-08 Score=96.71 Aligned_cols=111 Identities=19% Similarity=0.233 Sum_probs=95.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
....++|+|||-|.+...|...|..+++-+|.|-.|++.++.. ......+.+.++|-+.++ |.++++|+|++...+||
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~~~~~v~DEE~Ld-f~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIETSYFVGDEEFLD-FKENSVDLIISSLSLHW 149 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceEEEEEecchhccc-ccccchhhhhhhhhhhh
Confidence 4568999999999999999999888899999999999988533 233345788999999999 99999999999999999
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhh
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 187 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~ 187 (772)
..+ +...+..++..|||+|.|+..-++.+...+
T Consensus 150 ~Nd-------LPg~m~~ck~~lKPDg~FiasmlggdTLyE 182 (325)
T KOG2940|consen 150 TND-------LPGSMIQCKLALKPDGLFIASMLGGDTLYE 182 (325)
T ss_pred hcc-------CchHHHHHHHhcCCCccchhHHhccccHHH
Confidence 876 567889999999999999999888776543
No 202
>PRK04266 fibrillarin; Provisional
Probab=98.49 E-value=2.6e-06 Score=88.41 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=95.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.+|+|.|.++..|....+..+|.+||+++.|++.+.+...- .+++.++.+|+........
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~~~~~----------- 137 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPERYAH----------- 137 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcchhhh-----------
Confidence 345689999999999999999988756899999999998866555421 2568889999753100000
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC------
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS------ 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~------ 694 (772)
-...||+|++|+..++ ....+++.+++.|+|||.|++.+..+.
T Consensus 138 -------------------l~~~~D~i~~d~~~p~------------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~ 186 (226)
T PRK04266 138 -------------------VVEKVDVIYQDVAQPN------------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKD 186 (226)
T ss_pred -------------------ccccCCEEEECCCChh------------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCC
Confidence 0135999998754221 014468999999999999999654322
Q ss_pred -hhHHHHHHHHHHHh-ccceEEEeecC--CceEEEEE
Q 004133 695 -QATKDMVISRMKMV-FNHLFCLQLEE--DVNLVLFG 727 (772)
Q Consensus 695 -~~~~~~v~~~l~~v-F~~v~~~~~~~--~~N~vl~a 727 (772)
....+..++.+.+. |..+....... ..+..+++
T Consensus 187 ~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~ 223 (226)
T PRK04266 187 PKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVA 223 (226)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEE
Confidence 12234456777665 77666555432 23444444
No 203
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=1.6e-06 Score=99.09 Aligned_cols=133 Identities=14% Similarity=0.198 Sum_probs=97.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+|+|.|..+..+.... +..+|++||+++.+++.+++.+ |+ .+++++.+|+.++.....
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~-------- 318 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHEKFA-------- 318 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccchhc--------
Confidence 34689999999999999888876 5679999999999999999876 54 249999999977632221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC-CcCCcC-C------------CcHHHHHHHHHccCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM-TCPAAD-F------------VEGSFLLTVKDALSEQ 683 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~-s~Pp~~-f------------~~~~fl~~~~~~L~~~ 683 (772)
..||+|++|...+. .|+ ..-|.. + +..++|+.+.+.|+||
T Consensus 319 ------------------------~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 319 ------------------------EKFDKILVDAPCSG--LGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred ------------------------ccCCEEEEcCCCCC--CeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46999999974321 121 111111 1 2357899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhccc
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKMVFNH 711 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 711 (772)
|.+++...+-..+..+.++..+.+..+.
T Consensus 373 G~lvystcs~~~~Ene~vv~~~l~~~~~ 400 (444)
T PRK14902 373 GILVYSTCTIEKEENEEVIEAFLEEHPE 400 (444)
T ss_pred CEEEEEcCCCChhhhHHHHHHHHHhCCC
Confidence 9999988777666666677766555443
No 204
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.49 E-value=1.4e-06 Score=88.51 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
++.+|||+|||+|.++..++.++..+|+++|+++.+++.+++++...+ .+++++++|+.+.-....++||+|+....+.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 467999999999999987666666789999999999999987764433 3689999999763202345799999866632
Q ss_pred ccccCccchHHHHHHHHHHHh--ccccCeEEEEEEcCc
Q 004133 147 ALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTLAE 182 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~r--vLkpGG~~ii~~~~~ 182 (772)
.- ....+++.+.. +|+|+|.+++....+
T Consensus 133 ~g--------~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 133 KG--------LLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CC--------hHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 11 13455565554 489999888776543
No 205
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.48 E-value=1.2e-06 Score=89.73 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=76.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
...+||.||+|.|.++..+.+..+ ..+|++||++|.+++.|++.+.-. ..++++++.+|+.+.+..
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~------------ 139 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK------------ 139 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc------------
Confidence 346899999999999988888764 458999999999999999877321 235799999998764221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
...||+|+++.... .+...+.+.|+|||.|++.+.
T Consensus 140 ---------------------~~~fD~Ii~~~~~~----------------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 140 ---------------------HAPFDAIIVTAAAS----------------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ---------------------CCCccEEEEccCcc----------------hhhHHHHHhcCcCcEEEEEEc
Confidence 24699999964321 122456788999999998763
No 206
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.48 E-value=1.1e-06 Score=94.04 Aligned_cols=142 Identities=14% Similarity=0.177 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhH----HHHHHc-C----CCeEEEEe
Q 004133 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS----EHLYDA-G----FHGITNVD 98 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls----~~La~~-g----~~~V~gvD 98 (772)
.+.|+.....-- -..-.+|.+...+.. +...+... ....+|...||+||.-. ..+.+. + .-+|+|+|
T Consensus 79 ~~e~~~li~~lt-ineT~FFRd~~~f~~-L~~~~~~~--~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atD 154 (287)
T PRK10611 79 SAEWQAFINALT-TNLTAFFREAHHFPI-LAEHARRR--SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASD 154 (287)
T ss_pred HHHHHHHHHHhh-CCCCCccCCcHHHHH-HHHHHHhc--CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEE
Confidence 456666554431 122224444433333 33333221 23479999999999644 333332 1 12599999
Q ss_pred CCHHHHHHHHHHh------------------cc--------------CCCCcEEEEeeccCccccc-CCCccEEEecccc
Q 004133 99 FSKVVISDMLRRN------------------VR--------------DRSDMRWRVMDMTSMQVFM-DETFDVILDKGGL 145 (772)
Q Consensus 99 iS~~~I~~a~~~~------------------~~--------------~~~~v~f~~~D~~~l~~~~-~~sfDvVi~~~~l 145 (772)
+|+.+|+.|++-. .. -...++|.+.|+.+.+ ++ .+.||+|++.+++
T Consensus 155 Is~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~-~~~~~~fD~I~cRNvl 233 (287)
T PRK10611 155 IDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQ-WAVPGPFDAIFCRNVM 233 (287)
T ss_pred CCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCC-CccCCCcceeeHhhHH
Confidence 9999999997531 00 0135789999998865 43 6889999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.|+..+. ..++++.+++.|+|||++++-.
T Consensus 234 iyF~~~~-----~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 234 IYFDKTT-----QERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred hcCCHHH-----HHHHHHHHHHHhCCCcEEEEeC
Confidence 9885543 7899999999999999876653
No 207
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.47 E-value=3.4e-06 Score=88.36 Aligned_cols=105 Identities=12% Similarity=0.221 Sum_probs=77.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhC--CCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~--p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|.|.+...+.+.+ |+.++++||+++.|++.|++.+.- ....+++++.+|..++ .
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~----~--------- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV----E--------- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----C---------
Confidence 45689999999999988888764 678999999999999999988632 2345799999998764 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
...+|+|++.. . ..- +++.. -..+|+.+.+.|+|||.|++-
T Consensus 120 ----------------------~~~~d~v~~~~--~--l~~--~~~~~--~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 120 ----------------------IKNASMVILNF--T--LQF--LPPED--RIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred ----------------------CCCCCEEeeec--c--hhh--CCHHH--HHHHHHHHHHhcCCCeEEEEe
Confidence 13478776521 0 000 01111 257999999999999999976
No 208
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.47 E-value=5.5e-07 Score=91.36 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=82.1
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc-CCCCcEEEEeeccCc-c-cccCCCccEEEeccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSM-Q-VFMDETFDVILDKGG 144 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~-~~~~v~f~~~D~~~l-~-~~~~~sfDvVi~~~~ 144 (772)
...+||||||.|.+...++.. +-.+++|+|++...+..+.++... ...|+.++++|+..+ . .++++++|.|+....
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 348999999999999999987 556899999999999999877754 446899999999883 2 245689998876442
Q ss_pred ccccccCcc-chHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 145 LDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 145 l~~l~~~~~-~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
=-+...... ..-.-..+++.++++|+|||.+.+.|=..+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~ 139 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYA 139 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHH
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 222111000 00014689999999999999999988665443
No 209
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.47 E-value=4.8e-06 Score=92.81 Aligned_cols=151 Identities=14% Similarity=0.118 Sum_probs=98.5
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..++|.||+|+|.++..+....|..+|++||+||.++++|++..... ..+++++.+|..+.. ..
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-g~rV~fi~gDl~e~~--l~------------- 315 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-GARVEFAHGSWFDTD--MP------------- 315 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEcchhccc--cc-------------
Confidence 35899999999999999998888899999999999999999987422 237999999975431 00
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCC-CCCCCCCC------cCCcCCC--------cHHHHHHHHHccCCCcEEE
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDS-PDSSSGMT------CPAADFV--------EGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~-~d~~~g~s------~Pp~~f~--------~~~fl~~~~~~L~~~Gilv 687 (772)
...+||+|+.+--- +.....+. -|...+. -..+++.+.+.|+|+|.++
T Consensus 316 -----------------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 316 -----------------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred -----------------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 02469999985411 00000000 1111221 2467777788999999998
Q ss_pred EEecCCChhHHHHHHHHHHHh-ccceEEEeecCCceEEEEEec
Q 004133 688 VNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLS 729 (772)
Q Consensus 688 ~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~vl~a~~ 729 (772)
+-+.. ...+.+.+.+.+. |..+...+--.+..+++++..
T Consensus 379 lEiG~---~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 379 LEHGF---DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred EEECc---cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 75532 2234455555543 655555554445677777653
No 210
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.47 E-value=1.8e-06 Score=100.06 Aligned_cols=151 Identities=14% Similarity=0.164 Sum_probs=101.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
.+.+||.||+|+|+++..+...+|..+|++||++|.++++|++.. ++ +++++++.+|..+.+.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l--~~~v~~~~~D~~~~~~------------ 203 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV--TDRIQIIHSNWFENIE------------ 203 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC--ccceeeeecchhhhCc------------
Confidence 346899999999999999998889999999999999999999886 43 4689999999765421
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC--CCC------CcCCcCCC--------cHHHHHHHHHccCC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM------TCPAADFV--------EGSFLLTVKDALSE 682 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~--~g~------s~Pp~~f~--------~~~fl~~~~~~L~~ 682 (772)
..+||+|+.+.---... ..+ .-|..+++ -..+++.+.+.|+|
T Consensus 204 ----------------------~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~ 261 (506)
T PRK01544 204 ----------------------KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP 261 (506)
T ss_pred ----------------------CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC
Confidence 24699999843100000 000 01222222 24467788899999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHh-ccceEEEeecCCceEEEEEecCC
Q 004133 683 QGLFIVNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSSE 731 (772)
Q Consensus 683 ~Gilv~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~vl~a~~~~ 731 (772)
||.+++-+-... .+.+.+.+.+. |..+..++--.+..+++++....
T Consensus 262 gG~l~lEig~~q---~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~~ 308 (506)
T PRK01544 262 NGKIILEIGFKQ---EEAVTQIFLDHGYNIESVYKDLQGHSRVILISPIN 308 (506)
T ss_pred CCEEEEEECCch---HHHHHHHHHhcCCCceEEEecCCCCceEEEecccc
Confidence 999998653222 23344444443 55455555445667888887765
No 211
>PLN02672 methionine S-methyltransferase
Probab=98.46 E-value=7.5e-07 Score=109.49 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=88.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCC-----------------CCcEEEEeeccCccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-----------------SDMRWRVMDMTSMQV 130 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~-----------------~~v~f~~~D~~~l~~ 130 (772)
+.+|||+|||+|.++..++... ..+|+++|+|+.+++.|++++..+. .+++|+++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~- 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC- 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc-
Confidence 4689999999999999998873 3579999999999999987764321 25899999998743
Q ss_pred cc-CCCccEEEecccc----------------------------ccccc---CccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 131 FM-DETFDVILDKGGL----------------------------DALME---PELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 131 ~~-~~sfDvVi~~~~l----------------------------~~l~~---~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
-. ...||+|+++-.. .++.. ++++...+++++.++.++|+|||.+++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 2369999975441 01111 1334455899999999999999998875
Q ss_pred E-cCchhhhh-ccccc
Q 004133 179 T-LAESHVLG-LLFPK 192 (772)
Q Consensus 179 ~-~~~~~~~~-~l~~~ 192 (772)
. +.|..... .++..
T Consensus 278 iG~~q~~~v~~~l~~~ 293 (1082)
T PLN02672 278 MGGRPGQAVCERLFER 293 (1082)
T ss_pred ECccHHHHHHHHHHHH
Confidence 4 34444333 35543
No 212
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.46 E-value=2.8e-06 Score=87.28 Aligned_cols=144 Identities=14% Similarity=0.192 Sum_probs=97.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH--HHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~--l~~~~~~~~~~~~~ 618 (772)
...+||.||+|+|..+..+.+..+ ..+|++||++|. ...+.++++.+|..+. +.+...
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~-------- 111 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLE-------- 111 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHH--------
Confidence 346899999999999998888764 469999999992 1124589999997663 222210
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-----CcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-----~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
......||+|+.|....- .|. |..+. +...+|+.+.+.|+|||.|++-++..
T Consensus 112 -------------------~~~~~~~D~V~S~~~~~~--~g~--~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 112 -------------------RVGDSKVQVVMSDMAPNM--SGT--PAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred -------------------HhCCCCCCEEecCCCCcc--CCC--hHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 001367999999763221 111 11110 12578999999999999999977544
Q ss_pred ChhHHHHHHHHHHHhccceEEEeec----CCceEEEEEec
Q 004133 694 SQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLS 729 (772)
Q Consensus 694 ~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~vl~a~~ 729 (772)
+ . ...++..++..|..+..++.. +.....++|.+
T Consensus 169 ~-~-~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~ 206 (209)
T PRK11188 169 E-G-FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 206 (209)
T ss_pred c-C-HHHHHHHHHhCceEEEEECCccccccCceeEEEeec
Confidence 2 2 244688999999999988743 23445566653
No 213
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.46 E-value=4.6e-07 Score=79.49 Aligned_cols=94 Identities=14% Similarity=0.240 Sum_probs=71.0
Q ss_pred EEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccc
Q 004133 547 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 626 (772)
Q Consensus 547 LviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~ 626 (772)
|.||+|.|..+..|... +..+++++|+++.+++.|++.+. ..++.+..+|..++ .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~---~~~~~~~~~d~~~l----~----------------- 55 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK---NEGVSFRQGDAEDL----P----------------- 55 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT---TSTEEEEESBTTSS----S-----------------
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc---ccCchheeehHHhC----c-----------------
Confidence 78999999999999999 77899999999999999999885 35567888886554 1
Q ss_pred cCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-CcHHHHHHHHHccCCCcEEEE
Q 004133 627 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 627 ~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-~~~~fl~~~~~~L~~~Gilv~ 688 (772)
..+..||+|+.-- . + ..+ --..+++.+++.|+|||.+++
T Consensus 56 ------------~~~~sfD~v~~~~--~-----~----~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 56 ------------FPDNSFDVVFSNS--V-----L----HHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ------------S-TT-EEEEEEES--H-----G----GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------ccccccccccccc--c-----e----eeccCHHHHHHHHHHHcCcCeEEeC
Confidence 1247899998721 1 0 011 236799999999999999986
No 214
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.46 E-value=4.3e-06 Score=80.60 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=95.5
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~--~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~ 129 (772)
.++..+...++. ..+..|||+|.|||-++..+..+|. .+++.+++|+..+....+++ +.++++.+|+.++.
T Consensus 35 ~lA~~M~s~I~p---esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----p~~~ii~gda~~l~ 107 (194)
T COG3963 35 ILARKMASVIDP---ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----PGVNIINGDAFDLR 107 (194)
T ss_pred HHHHHHHhccCc---ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----CCccccccchhhHH
Confidence 444555555554 5678999999999999999999874 56999999999998776654 67789999998875
Q ss_pred ----cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 130 ----VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 130 ----~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
.+.+..||.|++.--+-.++. ....++++++...|.+||.++..+|+
T Consensus 108 ~~l~e~~gq~~D~viS~lPll~~P~-----~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 108 TTLGEHKGQFFDSVISGLPLLNFPM-----HRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHHhhcCCCeeeeEEeccccccCcH-----HHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 356788999998766655543 23679999999999999999999998
No 215
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.45 E-value=2.5e-06 Score=85.26 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=94.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
++.+||.+|+|.|.++..+....+ +|++||++|.+++.|++.+... ..+++++.+|..+..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~---------------- 79 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV---------------- 79 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------------
Confidence 446899999999999998888765 8999999999999999987532 235788888865431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC-----------cCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA-----------ADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp-----------~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..+||+|+.+.--.........++ ..-.-..|++.+.+.|+|||.+++..
T Consensus 80 -------------------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 -------------------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred -------------------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 146999998531100000000000 00123678999999999999999876
Q ss_pred cCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEe
Q 004133 691 VSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGL 728 (772)
Q Consensus 691 ~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~ 728 (772)
.+... ...++..+++.-=.+..+.-..-.++.+++-
T Consensus 141 ~~~~~--~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 141 SSLNG--EPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred eccCC--hHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 44332 2345666655432333333344456666654
No 216
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.44 E-value=1.6e-06 Score=89.96 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=82.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+||.||+|.|.++.++...+|..++++||+++.+++.|++.+. ++++++.+|..+..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~--------------- 93 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLP--------------- 93 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCC---------------
Confidence 34578999999999999999999998899999999999999999876 37889999875531
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....||+|+....-. ... -...+|..+++.|+|||.+++..+..
T Consensus 94 ------------------~~~~~fD~vi~~~~l~----~~~------~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 94 ------------------LEDSSFDLIVSNLALQ----WCD------DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred ------------------CCCCceeEEEEhhhhh----hcc------CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 0135799999742111 000 12679999999999999999887544
No 217
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.44 E-value=2.4e-06 Score=90.29 Aligned_cols=127 Identities=18% Similarity=0.224 Sum_probs=88.4
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
+.+||.+|+|.|.++..+....|..+|++||+||.+++.|++.... ..++++.+|..+++....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~---~~~~~~~~D~~~~l~~~~------------- 150 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD---AGGTVHEGDLYDALPTAL------------- 150 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH---cCCEEEEeechhhcchhc-------------
Confidence 4589999999999999999888888999999999999999998753 125789999877654321
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCC-CCCCCCCCcCCc--------CC--------CcHHHHHHHHHccCCCcE
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDS-PDSSSGMTCPAA--------DF--------VEGSFLLTVKDALSEQGL 685 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~-~d~~~g~s~Pp~--------~f--------~~~~fl~~~~~~L~~~Gi 685 (772)
..+||+|++|.-- +...... .+|. .+ +-..++..+.+.|+|+|.
T Consensus 151 ------------------~~~fDlVv~NPPy~~~~~~~~-~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~ 211 (251)
T TIGR03704 151 ------------------RGRVDILAANAPYVPTDAIAL-MPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGH 211 (251)
T ss_pred ------------------CCCEeEEEECCCCCCchhhhc-CCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 1469999997511 1000000 0111 11 135788888999999999
Q ss_pred EEEEecCCChhHHHHHHHHHHH
Q 004133 686 FIVNLVSRSQATKDMVISRMKM 707 (772)
Q Consensus 686 lv~Nl~~~~~~~~~~v~~~l~~ 707 (772)
+++-.... ....++..+++
T Consensus 212 l~l~~~~~---~~~~v~~~l~~ 230 (251)
T TIGR03704 212 LLVETSER---QAPLAVEAFAR 230 (251)
T ss_pred EEEEECcc---hHHHHHHHHHH
Confidence 99765322 23456666654
No 218
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.6e-06 Score=89.55 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=93.4
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-C-CcEEEEeeccCcc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-S-DMRWRVMDMTSMQ 129 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~-~v~f~~~D~~~l~ 129 (772)
..++..++.. .|+++|||.|.|+|.++..|+.. +..+|+..|+-+...+.|++++.... . ++++...|+.+..
T Consensus 83 ~~~I~~~~gi---~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 83 AGYIVARLGI---SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred HHHHHHHcCC---CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 4456666665 79999999999999999999974 34689999999999999998886532 2 4899999999976
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhh
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 187 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~ 187 (772)
+++ .||+|+. |. ++| -++++.++++|||||.+++..-.-+++.+
T Consensus 160 -~~~-~vDav~L----Dm-p~P-------W~~le~~~~~Lkpgg~~~~y~P~veQv~k 203 (256)
T COG2519 160 -DEE-DVDAVFL----DL-PDP-------WNVLEHVSDALKPGGVVVVYSPTVEQVEK 203 (256)
T ss_pred -ccc-ccCEEEE----cC-CCh-------HHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Confidence 444 8998873 32 222 47999999999999999998876666555
No 219
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.44 E-value=2.1e-06 Score=97.62 Aligned_cols=136 Identities=13% Similarity=0.113 Sum_probs=98.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.+|.|.|+.+..+....+..+|+++|+++.+++.+++.+ |+. .++.++.+|+.......
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~~~~~---------- 305 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGPSQWA---------- 305 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeccccccccccc----------
Confidence 446899999999999999999887679999999999999998876 552 23444556654321000
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC-CcCCcCC-------------CcHHHHHHHHHccCCCc
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM-TCPAADF-------------VEGSFLLTVKDALSEQG 684 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~-s~Pp~~f-------------~~~~fl~~~~~~L~~~G 684 (772)
....||.|++|+-.+. .|+ .--|... +..++|..+.+.|+|||
T Consensus 306 ---------------------~~~~fD~VllDaPcSg--~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG 362 (426)
T TIGR00563 306 ---------------------ENEQFDRILLDAPCSA--TGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGG 362 (426)
T ss_pred ---------------------cccccCEEEEcCCCCC--CcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 1357999999985432 232 1112111 14689999999999999
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhccce
Q 004133 685 LFIVNLVSRSQATKDMVISRMKMVFNHL 712 (772)
Q Consensus 685 ilv~Nl~~~~~~~~~~v~~~l~~vF~~v 712 (772)
.||+...+-+++..+.++..+-+-++..
T Consensus 363 ~lvystcs~~~~Ene~~v~~~l~~~~~~ 390 (426)
T TIGR00563 363 TLVYATCSVLPEENSEQIKAFLQEHPDF 390 (426)
T ss_pred EEEEEeCCCChhhCHHHHHHHHHhCCCC
Confidence 9999998888888888888887777653
No 220
>PRK03612 spermidine synthase; Provisional
Probab=98.43 E-value=7.9e-07 Score=103.40 Aligned_cols=110 Identities=19% Similarity=0.139 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHH--hc------cCCCCcEEEEeeccCcccccCCCccE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRR--NV------RDRSDMRWRVMDMTSMQVFMDETFDV 138 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~--~~------~~~~~v~f~~~D~~~l~~~~~~sfDv 138 (772)
++.+|||+|||+|..+..+.+.+. .+|+++|+++.+++.+++. .. -..++++++++|+.+.-...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 467999999999999999988754 6899999999999999873 11 12468999999998742134579999
Q ss_pred EEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 139 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+....-...... ..-....+++.++++|||||++++..
T Consensus 377 Ii~D~~~~~~~~~--~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSNPAL--GKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCCcch--hccchHHHHHHHHHhcCCCeEEEEec
Confidence 9986432211100 00113568999999999999998864
No 221
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.43 E-value=1.7e-06 Score=89.77 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=85.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
+++.+||.||+|+|-++..+.+..+..+|+++|+++.|+++|++...=..-..++++++||.+.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L---------------- 113 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL---------------- 113 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC----------------
Confidence 3678999999999999999999998889999999999999999998421112299999999764
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
+.++..||++.+.- . -..+.- -+..|+.+.+.|+|||.+++.=.+.
T Consensus 114 -----------------Pf~D~sFD~vt~~f-g---lrnv~d------~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 114 -----------------PFPDNSFDAVTISF-G---LRNVTD------IDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred -----------------CCCCCccCEEEeee-h---hhcCCC------HHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 12368899998832 1 111111 2779999999999999888765444
No 222
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.42 E-value=3.9e-06 Score=95.47 Aligned_cols=136 Identities=13% Similarity=0.124 Sum_probs=96.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.+|.|.|..+..+....+..+|+++|+++.+++.+++.+.-. +-+++++.+|+.+......
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-g~~~~~~~~D~~~~~~~~~------------ 310 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-GLKATVIVGDARDPAQWWD------------ 310 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEcCcccchhhcc------------
Confidence 456899999999999999998887679999999999999999887321 1236899999876422111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC--------------CcHHHHHHHHHccCCCcEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--------------~~~~fl~~~~~~L~~~Gilv 687 (772)
...||.|++|.-.+. .|.....++. ....+|..+.+.|+|||.++
T Consensus 311 -------------------~~~fD~Vl~D~Pcs~--~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv 369 (427)
T PRK10901 311 -------------------GQPFDRILLDAPCSA--TGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL 369 (427)
T ss_pred -------------------cCCCCEEEECCCCCc--ccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 256999999884331 2221111111 12478999999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhccc
Q 004133 688 VNLVSRSQATKDMVISRMKMVFNH 711 (772)
Q Consensus 688 ~Nl~~~~~~~~~~v~~~l~~vF~~ 711 (772)
+...+-.....+.++..+.+-.+.
T Consensus 370 ystcs~~~~Ene~~v~~~l~~~~~ 393 (427)
T PRK10901 370 YATCSILPEENEQQIKAFLARHPD 393 (427)
T ss_pred EEeCCCChhhCHHHHHHHHHhCCC
Confidence 988766666555666665554443
No 223
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.42 E-value=1.2e-06 Score=90.76 Aligned_cols=95 Identities=24% Similarity=0.365 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
...++||||+|.|..+..++.. |++|++.+.|..|....+++. |.+.|..+.. -.+.+||+|.+-++||-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg--------~~vl~~~~w~-~~~~~fDvIscLNvLDR 163 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKG--------FTVLDIDDWQ-QTDFKFDVISCLNVLDR 163 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCC--------CeEEehhhhh-ccCCceEEEeehhhhhc
Confidence 4578999999999999999775 778999999998866554321 3445555555 34568999999999998
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
...| ..+|++|++.|+|+|++++..
T Consensus 164 c~~P-------~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 164 CDRP-------LTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred cCCH-------HHHHHHHHHHhCCCCEEEEEE
Confidence 8775 589999999999999998764
No 224
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.41 E-value=1.9e-06 Score=86.29 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=82.5
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC--CC--------eEEEEeCCHHHHHHHHHHhccCCC--CcE
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FH--------GITNVDFSKVVISDMLRRNVRDRS--DMR 119 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g--~~--------~V~gvDiS~~~I~~a~~~~~~~~~--~v~ 119 (772)
.+...+..+... .++..|||.-||+|.+..+.+..+ .. +++|+|+++.+++.+++++...+. .+.
T Consensus 15 ~lA~~ll~la~~---~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 15 TLAAALLNLAGW---RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp HHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred HHHHHHHHHhCC---CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 455555555554 578899999999999998876652 22 288999999999999888754433 589
Q ss_pred EEEeeccCcccccCCCccEEEecccccccccC-ccchHHHHHHHHHHHhcccc
Q 004133 120 WRVMDMTSMQVFMDETFDVILDKGGLDALMEP-ELGHKLGNQYLSEVKRLLKS 171 (772)
Q Consensus 120 f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~-~~~~~~~~~~l~ei~rvLkp 171 (772)
+.+.|+++++ +.++++|+|+.+-....-... .+...++..+++++.++|++
T Consensus 92 ~~~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 92 FIQWDARELP-LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEE--GGGGG-GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred EEecchhhcc-cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999 889999999987766543321 12245588999999999999
No 225
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.41 E-value=3.3e-06 Score=96.62 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=99.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+|.|.|..+.++....+ ..+|++||+++.+++.+++.+ |+ .+++++.+|+..+. .
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~---~-------- 315 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS---P-------- 315 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc---c--------
Confidence 346899999999999888887664 358999999999999999887 54 36899999987752 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC----C----------CcHHHHHHHHHccCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD----F----------VEGSFLLTVKDALSEQ 683 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~----f----------~~~~fl~~~~~~L~~~ 683 (772)
...||+|++|+-.+. .|+..-.++ + ....+|..+.+.|+||
T Consensus 316 -----------------------~~~fD~Vl~D~Pcsg--~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 316 -----------------------EEQPDAILLDAPCTG--TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred -----------------------CCCCCEEEEcCCCCC--cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 246999999874331 222211111 1 1346899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhccc
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKMVFNH 711 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 711 (772)
|++++...+-.++..+.++..+-+..+.
T Consensus 371 G~lvystcs~~~~Ene~~v~~~l~~~~~ 398 (445)
T PRK14904 371 GVLVYATCSIEPEENELQIEAFLQRHPE 398 (445)
T ss_pred cEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 9999999888888878888888776654
No 226
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.41 E-value=2.1e-06 Score=91.86 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=68.3
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF 131 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~ 131 (772)
.+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.|++.++++... .+++++++|+.+++ +
T Consensus 29 ~i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~-~ 101 (272)
T PRK00274 29 NILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVD-L 101 (272)
T ss_pred HHHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCC-H
Confidence 444555555544 5678999999999999999999875 799999999999999876632 68999999999987 6
Q ss_pred cCCCccEEEeccc
Q 004133 132 MDETFDVILDKGG 144 (772)
Q Consensus 132 ~~~sfDvVi~~~~ 144 (772)
++-.+|.|+++-.
T Consensus 102 ~~~~~~~vv~NlP 114 (272)
T PRK00274 102 SELQPLKVVANLP 114 (272)
T ss_pred HHcCcceEEEeCC
Confidence 5433588887654
No 227
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.40 E-value=5e-06 Score=91.60 Aligned_cols=141 Identities=14% Similarity=0.165 Sum_probs=94.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.||+|.|.++..+....|..+|++||+++.+++.|++.+... .-..+++.+|+...+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-~l~~~~~~~D~~~~~----------------- 258 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-GLEGEVFASNVFSDI----------------- 258 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCEEEEccccccc-----------------
Confidence 35799999999999999999999889999999999999999887431 123467777775421
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHH
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 702 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 702 (772)
..+||+|+++- +-. .|+. ...-....|+..+.+.|+|||.|++= ..+...+ .
T Consensus 259 ------------------~~~fDlIvsNP--PFH-~g~~--~~~~~~~~~i~~a~~~LkpgG~L~iV-an~~l~y-~--- 310 (342)
T PRK09489 259 ------------------KGRFDMIISNP--PFH-DGIQ--TSLDAAQTLIRGAVRHLNSGGELRIV-ANAFLPY-P--- 310 (342)
T ss_pred ------------------CCCccEEEECC--Ccc-CCcc--ccHHHHHHHHHHHHHhcCcCCEEEEE-EeCCCCh-H---
Confidence 25699999832 110 0110 00012378999999999999988642 2233322 2
Q ss_pred HHHHHhccceEEEeecCCceEEEEEecC
Q 004133 703 SRMKMVFNHLFCLQLEEDVNLVLFGLSS 730 (772)
Q Consensus 703 ~~l~~vF~~v~~~~~~~~~N~vl~a~~~ 730 (772)
..+.+.|.++-.+. .+..=.|+-|.+.
T Consensus 311 ~~l~~~Fg~~~~la-~~~~f~v~~a~~~ 337 (342)
T PRK09489 311 DLLDETFGSHEVLA-QTGRFKVYRAIMT 337 (342)
T ss_pred HHHHHHcCCeEEEE-eCCCEEEEEEEcc
Confidence 34456798776554 3333456666543
No 228
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.39 E-value=2.5e-06 Score=97.25 Aligned_cols=126 Identities=9% Similarity=0.093 Sum_probs=83.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCc-cc--ccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM-QV--FMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l-~~--~~~~sfDvVi~~ 142 (772)
.++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.|++++...+ .+++|+++|+.+. +. +.+++||+|+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 456899999999999999999875 479999999999999988765433 4799999999763 11 335679999853
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEc
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAI 204 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~ 204 (772)
..-..+ ...+++.+.+ ++|++.+++ +.....+.+.+......+|.+.....
T Consensus 370 PPr~G~---------~~~~l~~l~~-l~~~~ivyv-sc~p~tlard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 370 PPRKGC---------AAEVLRTIIE-LKPERIVYV-SCNPATLARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred cCCCCC---------CHHHHHHHHh-cCCCEEEEE-cCCHHHHHHHHHHHHHCCeeEEEEEE
Confidence 321111 2456666554 788875544 44433333332222233565554443
No 229
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.39 E-value=1.8e-06 Score=89.26 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=92.0
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcc-c-cc
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ-V-FM 132 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~-~-~~ 132 (772)
+..+++. .....+||||||.|.+...+|.. +-.+++||++....+..|.++....+. |+.+++.|+..+- . ++
T Consensus 40 ~~~~f~~---~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~ 116 (227)
T COG0220 40 WSALFGN---NNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIP 116 (227)
T ss_pred HHHHhCC---CCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCC
Confidence 4455543 22358999999999999999998 456899999999999999998887777 9999999998743 2 34
Q ss_pred CCCccEEEecccccccccCcc-chHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 133 DETFDVILDKGGLDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 133 ~~sfDvVi~~~~l~~l~~~~~-~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+++.|-|+....=-|....-. ..-....+++.+.++|+|||.+.+.|=....
T Consensus 117 ~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 117 DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 559998886543222211000 0001568999999999999999998855443
No 230
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.38 E-value=4.3e-06 Score=93.82 Aligned_cols=110 Identities=11% Similarity=0.158 Sum_probs=79.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-C-CCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-D-KSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-~-~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+||.+|.|+|++...+... +..+|++||+++.+++.|++++.+.. + ++++++.+|+.+++++...
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~---------- 289 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---------- 289 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh----------
Confidence 478999999999986554432 34489999999999999999985431 2 4799999999999977541
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC-----cHHHHHHHHHccCCCcEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~-----~~~fl~~~~~~L~~~Gilv~ 688 (772)
.+.+||+||+|.-.-... ...+. -.+++..+.++|+|||+|+.
T Consensus 290 -------------------~~~~fDlVilDPP~f~~~------k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 290 -------------------RGEKFDVIVMDPPKFVEN------KSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred -------------------cCCCCCEEEECCCCCCCC------hHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 135799999964321110 00111 23456678899999999886
No 231
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.38 E-value=2.5e-06 Score=90.80 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=80.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++..|...+ ..+|++||++|.+++.|++.+.. .++++++.+|..+. .
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~----~----------- 112 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK----D----------- 112 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC----C-----------
Confidence 445789999999999998887765 45999999999999999998764 46899999987531 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
.....||+|+. ++... + +... -..+|+.+.+.|+|||.|++.-+.
T Consensus 113 ------------------~~~~~FD~V~s~~~l~h-----~--~~~d--~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 113 ------------------FPENTFDMIYSRDAILH-----L--SYAD--KKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred ------------------CCCCCeEEEEEhhhHHh-----C--CHHH--HHHHHHHHHHHcCCCcEEEEEEec
Confidence 11367999997 32111 0 1011 267999999999999999987554
No 232
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.38 E-value=7e-06 Score=82.76 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=92.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH--HHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~--l~~~~~~~~~~~~ 617 (772)
....+||+||+|+|.++..+...+ +..+|++||++|.+ .. ++++++.+|..+. +.....
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~---~~i~~~~~d~~~~~~~~~l~~------- 92 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI---ENVDFIRGDFTDEEVLNKIRE------- 92 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC---CCceEEEeeCCChhHHHHHHH-------
Confidence 345789999999999998888776 45689999999965 22 4578888886532 111110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC----CcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f----~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....+||+|++|.... ..|..+. ... .-..++..+.+.|+|||.+++.....
T Consensus 93 --------------------~~~~~~~D~V~~~~~~~--~~g~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 93 --------------------RVGDDKVDVVMSDAAPN--ISGYWDI-DHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred --------------------HhCCCCccEEEcCCCCC--CCCCccc-cHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 00135799999975211 1111000 001 12578999999999999999976433
Q ss_pred ChhHHHHHHHHHHHhccceEEEee--cCCce--EEEEEe
Q 004133 694 SQATKDMVISRMKMVFNHLFCLQL--EEDVN--LVLFGL 728 (772)
Q Consensus 694 ~~~~~~~v~~~l~~vF~~v~~~~~--~~~~N--~vl~a~ 728 (772)
.....++..++..|..+..++. ..+.| .+++|.
T Consensus 150 --~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 150 --EEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred --ccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence 2234578888888977666653 33333 456664
No 233
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.37 E-value=1.2e-06 Score=79.02 Aligned_cols=95 Identities=18% Similarity=0.303 Sum_probs=69.6
Q ss_pred EEEEcccccHHHHHHHHhC---CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 546 AVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 546 vLviGlG~G~l~~~L~~~~---p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
||.||+|+|...+.+...+ |..++++||+|+.+++.|++++.- ...+++++++|..++- ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-~~~~~~~~~~D~~~l~-~~-------------- 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-DGPKVRFVQADARDLP-FS-------------- 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-TTTTSEEEESCTTCHH-HH--------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-cCCceEEEECCHhHCc-cc--------------
Confidence 6899999999999999887 447999999999999999999832 2237999999997752 21
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC---cHHHHHHHHHccCCCc
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQG 684 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~---~~~fl~~~~~~L~~~G 684 (772)
..+||+|++ . +. ....|- -..+|+.+.++|+|||
T Consensus 65 ------------------~~~~D~v~~----~----~~--~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 65 ------------------DGKFDLVVC----S----GL--SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ------------------SSSEEEEEE---------TT--GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ------------------CCCeeEEEE----c----CC--ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 358999998 1 00 012222 2678999999999998
No 234
>PLN02244 tocopherol O-methyltransferase
Probab=98.37 E-value=2.4e-06 Score=94.34 Aligned_cols=107 Identities=14% Similarity=0.181 Sum_probs=80.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..+.+||.||+|.|.++..|.+.+ ..+|++||+++.+++.|++...-. ..++++++++|+.+. .
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~----~---------- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ----P---------- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC----C----------
Confidence 345789999999999999999876 569999999999999998875211 246799999998653 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+..||+|+.-. +. .-+ | -...+++.+.+.|+|||.|++-.+
T Consensus 182 -------------------~~~~~FD~V~s~~-~~---~h~--~----d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 182 -------------------FEDGQFDLVWSME-SG---EHM--P----DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred -------------------CCCCCccEEEECC-ch---hcc--C----CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 1136799998711 11 111 1 126899999999999999998654
No 235
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.37 E-value=4.8e-06 Score=89.80 Aligned_cols=118 Identities=13% Similarity=0.202 Sum_probs=84.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||.+|+|+|.++..+... +..+|++||+||.+++.|++.+... -..++.+..+|... ..
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~----~~----------- 222 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ----PI----------- 222 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc----cc-----------
Confidence 3478999999999999888765 4458999999999999999987432 13456666665211 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
..+||+|+.++... .-..++..+.+.|+|||.|++--+.. .....
T Consensus 223 --------------------~~~fDlVvan~~~~-------------~l~~ll~~~~~~LkpgG~li~sgi~~--~~~~~ 267 (288)
T TIGR00406 223 --------------------EGKADVIVANILAE-------------VIKELYPQFSRLVKPGGWLILSGILE--TQAQS 267 (288)
T ss_pred --------------------CCCceEEEEecCHH-------------HHHHHHHHHHHHcCCCcEEEEEeCcH--hHHHH
Confidence 25799999854211 11578999999999999999865433 23355
Q ss_pred HHHHHHHhcc
Q 004133 701 VISRMKMVFN 710 (772)
Q Consensus 701 v~~~l~~vF~ 710 (772)
+.+.+++.|.
T Consensus 268 v~~~~~~~f~ 277 (288)
T TIGR00406 268 VCDAYEQGFT 277 (288)
T ss_pred HHHHHHccCc
Confidence 6777776554
No 236
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.36 E-value=2.6e-06 Score=84.80 Aligned_cols=105 Identities=21% Similarity=0.228 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeeccC-c--ccccCCCccE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTS-M--QVFMDETFDV 138 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~----~~v~f~~~D~~~-l--~~~~~~sfDv 138 (772)
..+.+|||+|||+|..+..++.. +..+|+..|..+ .++.++.+...+. .++.+...|..+ . .......||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 46789999999999999999988 667899999999 8888877765433 578888888765 1 1123468999
Q ss_pred EEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 139 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|++..+++.-.. ...+++.+.++|+++|.+++..
T Consensus 123 IlasDv~Y~~~~-------~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 123 ILASDVLYDEEL-------FEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEES--S-GGG-------HHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEecccchHHH-------HHHHHHHHHHHhCCCCEEEEEe
Confidence 999998875322 7889999999999999855543
No 237
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.35 E-value=2.3e-06 Score=90.85 Aligned_cols=87 Identities=9% Similarity=0.162 Sum_probs=70.1
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF 131 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~ 131 (772)
.+...+...++. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... ..+++++++|+.+++ +
T Consensus 16 ~~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~-~ 89 (258)
T PRK14896 16 RVVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVD-L 89 (258)
T ss_pred HHHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCC-c
Confidence 444555555543 5678999999999999999999854 799999999999999877643 468999999999887 5
Q ss_pred cCCCccEEEeccccc
Q 004133 132 MDETFDVILDKGGLD 146 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~ 146 (772)
+ .||.|+++-..+
T Consensus 90 ~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 P--EFNKVVSNLPYQ 102 (258)
T ss_pred h--hceEEEEcCCcc
Confidence 4 489999876654
No 238
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.35 E-value=5.7e-08 Score=87.06 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=57.8
Q ss_pred EEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccc
Q 004133 547 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 626 (772)
Q Consensus 547 LviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~ 626 (772)
|.||+|.|.+...|...+|..++++||++|.+++.|++.+.-...........+-.+.....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 62 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD------------------ 62 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC------------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc------------------
Confidence 68999999999999999999999999999999988888874322222222222111111110
Q ss_pred cCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEE
Q 004133 627 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 686 (772)
Q Consensus 627 ~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gil 686 (772)
...+||+|+.= ..-.-+. --..+|+.+++.|+|||+|
T Consensus 63 -------------~~~~fD~V~~~----~vl~~l~------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 63 -------------PPESFDLVVAS----NVLHHLE------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -------------C----SEEEEE-----TTS--S-------HHHHHHHHTTT-TSS-EE
T ss_pred -------------cccccceehhh----hhHhhhh------hHHHHHHHHHHHcCCCCCC
Confidence 12589999861 1111111 2268999999999999986
No 239
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.35 E-value=7e-07 Score=93.13 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=71.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
..+.+||.+|+|+|.++..|.+.. |..+|++||+++.|+++|++...-....+++++++|+.+. .
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l----p---------- 111 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL----P---------- 111 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----------------
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh----c----------
Confidence 456799999999999999888775 5679999999999999999886321224899999998664 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC-cHHHHHHHHHccCCCcEEEEEe
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~-~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..+..||+|.+-- |+. .+- -...|+.+.+.|+|||.+++-=
T Consensus 112 -------------------~~d~sfD~v~~~f-------glr----n~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 112 -------------------FPDNSFDAVTCSF-------GLR----NFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -------------------S-TT-EEEEEEES--------GG----G-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCCceeEEEHHh-------hHH----hhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 1247799999722 221 111 3679999999999999887533
No 240
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.34 E-value=7.9e-06 Score=91.33 Aligned_cols=125 Identities=9% Similarity=0.099 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
++.+|||+|||+|.++..++..+ ..|+|+|+++.+++.|++++...+ .+++|.++|+.+...-...+||+|+..-.-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45799999999999999999876 479999999999999987764443 3789999999774301224699988654321
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 206 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~ 206 (772)
.+ ...+++.+.+ ++|++.+++.. ....+.+.+... .+|.+......+
T Consensus 312 G~---------~~~~l~~l~~-~~p~~ivyvsc-~p~TlaRDl~~L--~gy~l~~~~~~D 358 (374)
T TIGR02085 312 GI---------GKELCDYLSQ-MAPKFILYSSC-NAQTMAKDIAEL--SGYQIERVQLFD 358 (374)
T ss_pred CC---------cHHHHHHHHh-cCCCeEEEEEe-CHHHHHHHHHHh--cCceEEEEEEec
Confidence 11 2355555543 68887666553 334444432222 367666555444
No 241
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.32 E-value=2.4e-06 Score=91.14 Aligned_cols=109 Identities=15% Similarity=0.228 Sum_probs=76.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....+||.||+|.|+++.++.+.+ +++|++|.++++-.+.|++.. |+ .++++|..+|-.++
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl--~~~v~v~~~D~~~~------------- 124 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL--EDRVEVRLQDYRDL------------- 124 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS--SSTEEEEES-GGG--------------
T ss_pred CCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEeecccc-------------
Confidence 456799999999999999999997 679999999999999999887 54 57899999996554
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
..+||.|+. .+|...-..=.-+.|++.+.+.|+|||.+++..++....
T Consensus 125 -----------------------~~~fD~IvS--------i~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~ 172 (273)
T PF02353_consen 125 -----------------------PGKFDRIVS--------IEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDP 172 (273)
T ss_dssp -------------------------S-SEEEE--------ESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred -----------------------CCCCCEEEE--------EechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 147999874 122111111123789999999999999999987765443
No 242
>PTZ00146 fibrillarin; Provisional
Probab=98.31 E-value=1.2e-05 Score=85.87 Aligned_cols=140 Identities=20% Similarity=0.231 Sum_probs=92.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHH----HHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLT----MLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~----v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
...+||.||+|.|.++..+..... .-+|.+||+++. ++++|++. +++..+++|+..-. ...
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r------~NI~~I~~Da~~p~-~y~------- 197 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR------PNIVPIIEDARYPQ-KYR------- 197 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CCCEEEECCccChh-hhh-------
Confidence 446899999999999999999874 348999999996 55665432 46889999976421 111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC--
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS-- 694 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~-- 694 (772)
.....+|+|++|+...| -...++.+++..|+|+|.|++-+-.++
T Consensus 198 ----------------------~~~~~vDvV~~Dva~pd------------q~~il~~na~r~LKpGG~~vI~ika~~id 243 (293)
T PTZ00146 198 ----------------------MLVPMVDVIFADVAQPD------------QARIVALNAQYFLKNGGHFIISIKANCID 243 (293)
T ss_pred ----------------------cccCCCCEEEEeCCCcc------------hHHHHHHHHHHhccCCCEEEEEEeccccc
Confidence 00136999999984322 114566789999999999998433221
Q ss_pred ----h-hHHHHHHHHHHHh-ccceEEEeec--CCceEEEEEec
Q 004133 695 ----Q-ATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGLS 729 (772)
Q Consensus 695 ----~-~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~vl~a~~ 729 (772)
+ +.+..-++.|++. |.-+-.+.++ ...+.++++..
T Consensus 244 ~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~ 286 (293)
T PTZ00146 244 STAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVY 286 (293)
T ss_pred cCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEE
Confidence 1 1122335778887 8865555543 23445555543
No 243
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.31 E-value=2.4e-06 Score=86.87 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=73.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.+|+|.|.++.+|.+. ..+|++||+++.+++.|++...-..-.+++++++|..++ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--~~------------- 92 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL--TF------------- 92 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC--Cc-------------
Confidence 3578999999999999999886 358999999999999999876322224588888886543 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
...||+|+.=. . .. ..++. .-..+++.+++.|+|||.+++
T Consensus 93 -------------------~~~fD~I~~~~--~--~~--~~~~~--~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 93 -------------------DGEYDFILSTV--V--LM--FLEAK--TIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -------------------CCCcCEEEEec--c--hh--hCCHH--HHHHHHHHHHHHcCCCcEEEE
Confidence 24599998611 0 00 00111 126899999999999998543
No 244
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.31 E-value=1.7e-05 Score=81.36 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=80.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.+.+||.+|+|.|.++..+....|. .+++++|+++.+++.+++.+. ...+++++.+|..+.. .
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~--~------------ 102 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP--F------------ 102 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC--C------------
Confidence 5679999999999998888888775 699999999999999999887 3567999999986642 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
....||+|++...-. .+. . -..+++.+++.|+|||.+++-
T Consensus 103 -------------------~~~~~D~i~~~~~~~----~~~----~--~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 103 -------------------EDNSFDAVTIAFGLR----NVT----D--IQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred -------------------CCCcEEEEEEeeeeC----Ccc----c--HHHHHHHHHHHcCCCcEEEEE
Confidence 125699998732111 111 1 267999999999999998863
No 245
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.31 E-value=7.2e-06 Score=85.89 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=90.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHH--HHHhhcccCcc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIK--FVREMKSSSAT 614 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~--~l~~~~~~~~~ 614 (772)
....+||.-|.|+|+|+.+|.+.. |..+|...|+.++-++.|++.| |+ ++++++++.|..+ |-.+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl--~~~v~~~~~Dv~~~g~~~~------- 109 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL--DDNVTVHHRDVCEEGFDEE------- 109 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--CTTEEEEES-GGCG--STT-------
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--CCCceeEecceeccccccc-------
Confidence 456799999999999999998654 7779999999999999999998 55 5689999999653 2001
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHcc-CCCcEEEEEecCC
Q 004133 615 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDAL-SEQGLFIVNLVSR 693 (772)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L-~~~Gilv~Nl~~~ 693 (772)
-...+|+||+|+-++ .+.+..+++.| ++||.+++-+.+-
T Consensus 110 -------------------------~~~~~DavfLDlp~P---------------w~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 110 -------------------------LESDFDAVFLDLPDP---------------WEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp --------------------------TTSEEEEEEESSSG---------------GGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred -------------------------ccCcccEEEEeCCCH---------------HHHHHHHHHHHhcCCceEEEECCCH
Confidence 125799999999554 66799999999 8999999776544
Q ss_pred ChhHHHHHHHHHHH-hccceEEE
Q 004133 694 SQATKDMVISRMKM-VFNHLFCL 715 (772)
Q Consensus 694 ~~~~~~~v~~~l~~-vF~~v~~~ 715 (772)
+....++..|++ -|.++..+
T Consensus 150 --eQv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 150 --EQVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp --HHHHHHHHHHHHTTEEEEEEE
T ss_pred --HHHHHHHHHHHHCCCeeeEEE
Confidence 334555777766 46654443
No 246
>PRK04148 hypothetical protein; Provisional
Probab=98.30 E-value=8.5e-06 Score=77.02 Aligned_cols=110 Identities=11% Similarity=0.163 Sum_probs=78.6
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCch-hHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSR-LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV 130 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~-ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~ 130 (772)
.+..++.+.+.. ..+.+|||+|||.|. ++..|++.|+ +|+++|+++.+++.++++ .+++++.|+++.+
T Consensus 3 ~i~~~l~~~~~~---~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~- 71 (134)
T PRK04148 3 TIAEFIAENYEK---GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL------GLNAFVDDLFNPN- 71 (134)
T ss_pred HHHHHHHHhccc---ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh------CCeEEECcCCCCC-
Confidence 455556666544 356899999999995 8999998887 799999999999888654 3789999999876
Q ss_pred cc-CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 131 FM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 131 ~~-~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+. -+.+|+|++.. ++++ +...+-++++-+ |.-+++..++.+.
T Consensus 72 ~~~y~~a~liysir-----pp~e-----l~~~~~~la~~~--~~~~~i~~l~~e~ 114 (134)
T PRK04148 72 LEIYKNAKLIYSIR-----PPRD-----LQPFILELAKKI--NVPLIIKPLSGEE 114 (134)
T ss_pred HHHHhcCCEEEEeC-----CCHH-----HHHHHHHHHHHc--CCCEEEEcCCCCC
Confidence 32 35789988733 1211 445555555543 5667777777654
No 247
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.29 E-value=5.2e-06 Score=85.27 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=74.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++.+|.... .++++||+++.+++.|++.+.-..-.+++++.+|+.+.+.
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------------- 140 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-------------- 140 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC--------------
Confidence 345789999999999888888775 3799999999999999998732112358999999743211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
....||+|+++... ..+.+.+.+.|+|||.+++.+.
T Consensus 141 -------------------~~~~fD~I~~~~~~----------------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 -------------------AYAPFDRILVTAAA----------------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -------------------cCCCcCEEEEccCc----------------hhhhHHHHHhcCCCcEEEEEEc
Confidence 12569999996421 1223456789999999999875
No 248
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.28 E-value=4.1e-06 Score=84.59 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=85.2
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC-CCCc-EEEEeeccCc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDM-RWRVMDMTSM 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~-~~~v-~f~~~D~~~l 128 (772)
-+...|.+++.. .+.+|||||||||..+.+++.. ..-.-.-.|..+..+.-........ .+++ .-+..|+++.
T Consensus 13 pIl~vL~~~l~~----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 13 PILEVLKQYLPD----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP 88 (204)
T ss_pred HHHHHHHHHhCc----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence 566677788753 2335999999999999999987 3334677888887765444433222 2232 3456788776
Q ss_pred ccc--------cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 129 QVF--------MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 129 ~~~--------~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+ . ..++||.|++..++|-..... .+.+|+.+.++|++||.+++.
T Consensus 89 ~-w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~-----~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 89 P-WPWELPAPLSPESFDAIFCINMLHISPWSA-----VEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred C-CccccccccCCCCcceeeehhHHHhcCHHH-----HHHHHHHHHHhCCCCCEEEEe
Confidence 4 2 245899999999998776543 789999999999999998775
No 249
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.28 E-value=3.6e-06 Score=89.94 Aligned_cols=131 Identities=15% Similarity=0.057 Sum_probs=92.2
Q ss_pred ccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEE
Q 004133 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWR 121 (772)
Q Consensus 45 eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~ 121 (772)
-||-+....+..+.++. .+.+|||+-|=||.++...+..|..+|++||.|..+++.+++++.-++ ..++|+
T Consensus 106 GlFlDqR~nR~~v~~~~------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~ 179 (286)
T PF10672_consen 106 GLFLDQRENRKWVRKYA------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFI 179 (286)
T ss_dssp SS-GGGHHHHHHHHHHC------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEE
T ss_pred eEcHHHHhhHHHHHHHc------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEE
Confidence 37777778888887775 367999999999999999888888889999999999999998876544 368999
Q ss_pred EeeccCcc-c-ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 122 VMDMTSMQ-V-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 122 ~~D~~~l~-~-~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
++|+.+.- . -..+.||+||..-.-.. .....-...+.+++..+.++|+|||.+++++.+.
T Consensus 180 ~~Dvf~~l~~~~~~~~fD~IIlDPPsF~-k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 180 QGDVFKFLKRLKKGGRFDLIILDPPSFA-KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp ES-HHHHHHHHHHTT-EEEEEE--SSEE-SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred ecCHHHHHHHHhcCCCCCEEEECCCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 99998732 0 13468998885332111 1111112237789999999999999998877663
No 250
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=3e-06 Score=79.57 Aligned_cols=106 Identities=13% Similarity=0.161 Sum_probs=82.7
Q ss_pred ccccccchhhHHHHHHHhhcCC-CCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEE
Q 004133 43 SFEWYAEWPQLRDPLISLIGAP-TSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWR 121 (772)
Q Consensus 43 ~~eW~~~~~~l~~~l~~~l~~~-~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~ 121 (772)
.+|-|...+.+..-+...++.. +.-.+.+++|+|||.|-++.....-+...|.|+||.+.+++.+.+++..-..++.++
T Consensus 22 ~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlL 101 (185)
T KOG3420|consen 22 LLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLL 101 (185)
T ss_pred hhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhhee
Confidence 3455666667766665555442 224688999999999999976665566779999999999999988776666688999
Q ss_pred EeeccCcccccCCCccEEEecccccccc
Q 004133 122 VMDMTSMQVFMDETFDVILDKGGLDALM 149 (772)
Q Consensus 122 ~~D~~~l~~~~~~sfDvVi~~~~l~~l~ 149 (772)
++|+.++. +..+.||.++.+..+..-.
T Consensus 102 qcdildle-~~~g~fDtaviNppFGTk~ 128 (185)
T KOG3420|consen 102 QCDILDLE-LKGGIFDTAVINPPFGTKK 128 (185)
T ss_pred eeeccchh-ccCCeEeeEEecCCCCccc
Confidence 99999998 7889999999877765443
No 251
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=9e-06 Score=87.16 Aligned_cols=146 Identities=15% Similarity=0.154 Sum_probs=95.0
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccc
Q 004133 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 624 (772)
Q Consensus 545 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 624 (772)
+||.||.|+|+++..|....|+.+|+++||+|..+++|++......-.++.++.+ ++.....
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~---dlf~~~~--------------- 174 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQS---DLFEPLR--------------- 174 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEee---ecccccC---------------
Confidence 8999999999999999999999999999999999999998862211144455544 4544432
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCC----------------CCCcCCcC-CCcHHHHHHHHHccCCCcEEE
Q 004133 625 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS----------------GMTCPAAD-FVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~----------------g~s~Pp~~-f~~~~fl~~~~~~L~~~Gilv 687 (772)
.+||+|+. +.+--.. .+-.-+.. -+-..|+..+.+.|+|+|+++
T Consensus 175 -----------------~~fDlIVs--NPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~ 235 (280)
T COG2890 175 -----------------GKFDLIVS--NPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLI 235 (280)
T ss_pred -----------------CceeEEEe--CCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEE
Confidence 37999986 2221000 00000000 134678899999999999999
Q ss_pred EEecCCChhHHHHHHHHHHHhc--cceEEEeecCCceEEEEEecC
Q 004133 688 VNLVSRSQATKDMVISRMKMVF--NHLFCLQLEEDVNLVLFGLSS 730 (772)
Q Consensus 688 ~Nl~~~~~~~~~~v~~~l~~vF--~~v~~~~~~~~~N~vl~a~~~ 730 (772)
+-.-..... .+.+.+.+.. ..+...+-..+.+.++.+...
T Consensus 236 le~g~~q~~---~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 236 LEIGLTQGE---AVKALFEDTGFFEIVETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred EEECCCcHH---HHHHHHHhcCCceEEEEEecCCCceEEEEEEec
Confidence 877433333 3444444443 445555545566777766543
No 252
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.27 E-value=1.2e-05 Score=91.70 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=100.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+|.|.|..+.++....+ ..+|+++|+++.+++.+++.+ |+ .+++++.+|+.++.....
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~~-------- 320 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRNLLELKP-------- 320 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhhcccccc--------
Confidence 446899999999999988888764 458999999999999998876 54 358999999887632110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-CcC-C------------CcHHHHHHHHHccCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AAD-F------------VEGSFLLTVKDALSEQ 683 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~P-p~~-f------------~~~~fl~~~~~~L~~~ 683 (772)
.....||.|++|+-.+- .|+..- |.. + +..++|..+.+.|+||
T Consensus 321 ---------------------~~~~~fD~Vl~DaPCSg--~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 321 ---------------------QWRGYFDRILLDAPCSG--LGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred ---------------------cccccCCEEEEeCCCCc--ccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 01246999999985431 122111 111 1 1468899999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhccce
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKMVFNHL 712 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v 712 (772)
|.+|+...+-.++..+.++..+-+-++..
T Consensus 378 G~lvystcsi~~~Ene~~v~~~l~~~~~~ 406 (434)
T PRK14901 378 GTLVYATCTLHPAENEAQIEQFLARHPDW 406 (434)
T ss_pred CEEEEEeCCCChhhHHHHHHHHHHhCCCc
Confidence 99999887777777777787776666543
No 253
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.27 E-value=7.3e-06 Score=83.38 Aligned_cols=104 Identities=16% Similarity=0.250 Sum_probs=75.8
Q ss_pred CCeEEEEcccccHHHHH-HHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMF-LHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~-L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
..+||.+|+|+|+++.. +... ..+|++||+|+..++.|++.+....-++++++.+|..+++...
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~------------- 118 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP------------- 118 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc-------------
Confidence 36899999999999975 4443 2589999999999999999863322247999999999887542
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHc--cCCCcEEEEEec
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDA--LSEQGLFIVNLV 691 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~--L~~~Gilv~Nl~ 691 (772)
...||+|++|- + ...| +..+.++.+... |.++|++++-..
T Consensus 119 -------------------~~~fDlV~~DP--P-y~~g--------~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 119 -------------------GTPHNVVFVDP--P-FRKG--------LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred -------------------CCCceEEEECC--C-CCCC--------hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 14599999943 1 1111 245566766664 799999997654
No 254
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.27 E-value=4.5e-06 Score=88.34 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=91.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
....++|.||+|.|++..++.+.+ +++|++|.++++..+.|++.+ |+ ..+++|...|=.++
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~------------- 134 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDF------------- 134 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEecccccc-------------
Confidence 566899999999999999999998 789999999999999999976 66 36899999987765
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
..+||-|+. .++.--. .=.-+.||..+++.|+|||.+++..+.....
T Consensus 135 -----------------------~e~fDrIvSvgmfEhvg---------~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~ 182 (283)
T COG2230 135 -----------------------EEPFDRIVSVGMFEHVG---------KENYDDFFKKVYALLKPGGRMLLHSITGPDQ 182 (283)
T ss_pred -----------------------ccccceeeehhhHHHhC---------cccHHHHHHHHHhhcCCCceEEEEEecCCCc
Confidence 244999873 2222110 0123899999999999999999888765432
Q ss_pred HH-HHHHHHHHHhccc
Q 004133 697 TK-DMVISRMKMVFNH 711 (772)
Q Consensus 697 ~~-~~v~~~l~~vF~~ 711 (772)
.. ....=..+-+||.
T Consensus 183 ~~~~~~~~i~~yiFPg 198 (283)
T COG2230 183 EFRRFPDFIDKYIFPG 198 (283)
T ss_pred ccccchHHHHHhCCCC
Confidence 21 1112233556774
No 255
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.26 E-value=1.5e-05 Score=84.10 Aligned_cols=111 Identities=13% Similarity=0.177 Sum_probs=76.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-CCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|+|.++..+....+ .+|++||+||.+++.|++.+.... ..++.+..+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-------------------- 176 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-------------------- 176 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------------
Confidence 3567999999999999988877543 379999999999999999874321 122222111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHH
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 699 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 699 (772)
+.+||+|+.++... .-..++..+.+.|+|||.+++.-+.. ....
T Consensus 177 ---------------------~~~fD~Vvani~~~-------------~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~ 220 (250)
T PRK00517 177 ---------------------DLKADVIVANILAN-------------PLLELAPDLARLLKPGGRLILSGILE--EQAD 220 (250)
T ss_pred ---------------------CCCcCEEEEcCcHH-------------HHHHHHHHHHHhcCCCcEEEEEECcH--hhHH
Confidence 12599999854321 12578899999999999999864333 2234
Q ss_pred HHHHHHHHh
Q 004133 700 MVISRMKMV 708 (772)
Q Consensus 700 ~v~~~l~~v 708 (772)
.+...+++.
T Consensus 221 ~v~~~l~~~ 229 (250)
T PRK00517 221 EVLEAYEEA 229 (250)
T ss_pred HHHHHHHHC
Confidence 556666665
No 256
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.26 E-value=8.7e-06 Score=85.29 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=88.9
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeecc
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMT 126 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~ 126 (772)
+.=..++..+++. .|+++|||.|.|+|.++..|+.. +..+|+..|+.+..++.|++++...+. ++++.+.|+.
T Consensus 26 pkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 26 PKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred CchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 3444556677766 79999999999999999999976 345799999999999999988866554 6899999998
Q ss_pred Cccccc---CCCccEEEecccccccccCccchHHHHHHHHHHHhcc-ccCeEEEEEEcCchhhhhc
Q 004133 127 SMQVFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL-KSGGKFVCLTLAESHVLGL 188 (772)
Q Consensus 127 ~l~~~~---~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvL-kpGG~~ii~~~~~~~~~~~ 188 (772)
+.. |. +..||.|+. |- ++| -.++..+.++| |+||++++.+-+-+.+.+.
T Consensus 103 ~~g-~~~~~~~~~DavfL----Dl-p~P-------w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~ 155 (247)
T PF08704_consen 103 EEG-FDEELESDFDAVFL----DL-PDP-------WEAIPHAKRALKKPGGRICCFSPCIEQVQKT 155 (247)
T ss_dssp CG---STT-TTSEEEEEE----ES-SSG-------GGGHHHHHHHE-EEEEEEEEEESSHHHHHHH
T ss_pred ccc-ccccccCcccEEEE----eC-CCH-------HHHHHHHHHHHhcCCceEEEECCCHHHHHHH
Confidence 755 53 367898763 32 222 25889999999 8999999998776665553
No 257
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.25 E-value=2.7e-06 Score=87.20 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=73.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||.|+|..+..|...... .+|++||++|.+++.|++.+.-..-.+++++++||..-...
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~------------ 138 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE------------ 138 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG------------
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc------------
Confidence 34579999999999999999988654 37999999999999999998322234899999999754322
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
...||.|++.+-..+ .| ..+.+.|++||.+|+-+-.
T Consensus 139 ---------------------~apfD~I~v~~a~~~-------ip---------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 139 ---------------------EAPFDRIIVTAAVPE-------IP---------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp ---------------------G-SEEEEEESSBBSS------------------HHHHHTEEEEEEEEEEESS
T ss_pred ---------------------CCCcCEEEEeeccch-------HH---------HHHHHhcCCCcEEEEEEcc
Confidence 246999999543321 12 2345569999999998753
No 258
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.25 E-value=3.3e-06 Score=87.31 Aligned_cols=103 Identities=12% Similarity=0.126 Sum_probs=77.4
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
++||.||+|.|.++..+.+.+|..+++++|+++.+++.|++.+.- ..+++++++.+|..+. ..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~---~~------------- 64 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD---PF------------- 64 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC---CC-------------
Confidence 379999999999999998888888999999999999999988721 1256889998886332 00
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|+.-- +...... ...+|+.+++.|+|||.+++--
T Consensus 65 ------------------~~~fD~I~~~~--------~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 65 ------------------PDTYDLVFGFE--------VIHHIKD--KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred ------------------CCCCCEeehHH--------HHHhCCC--HHHHHHHHHHHcCCCCEEEEEE
Confidence 14699998511 1000111 2789999999999999999754
No 259
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.25 E-value=9.1e-06 Score=85.94 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=67.0
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF 131 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~ 131 (772)
.+...+.+.+.. .++.+|||+|||+|.++..|++.+. .|+++|+++.+++.++++... ..+++++++|+.+++ +
T Consensus 16 ~i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~-~ 89 (253)
T TIGR00755 16 SVIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVD-L 89 (253)
T ss_pred HHHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCC-h
Confidence 444445555543 5678999999999999999999875 599999999999999876633 568999999999987 5
Q ss_pred cCCCcc---EEEecccc
Q 004133 132 MDETFD---VILDKGGL 145 (772)
Q Consensus 132 ~~~sfD---vVi~~~~l 145 (772)
+ .|| +|+++-.+
T Consensus 90 ~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 90 P--DFPKQLKVVSNLPY 104 (253)
T ss_pred h--HcCCcceEEEcCCh
Confidence 4 466 77765443
No 260
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1.6e-05 Score=84.38 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=91.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.+|+|.|.|...|....|..+|+.||+|..-++.||+......-++..|+.+|..+=
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~------------------ 220 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP------------------ 220 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc------------------
Confidence 34999999999999999999999999999999999999999998443223336666664331
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHH
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 702 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 702 (772)
. ..+||+||. +.+-. .|.. ....+..+++..++++|++||-|-+=. .+... .-
T Consensus 221 ----------------v-~~kfd~Iis--NPPfh-~G~~--v~~~~~~~~i~~A~~~L~~gGeL~iVa-n~~l~----y~ 273 (300)
T COG2813 221 ----------------V-EGKFDLIIS--NPPFH-AGKA--VVHSLAQEIIAAAARHLKPGGELWIVA-NRHLP----YE 273 (300)
T ss_pred ----------------c-cccccEEEe--CCCcc-CCcc--hhHHHHHHHHHHHHHhhccCCEEEEEE-cCCCC----hH
Confidence 1 237999998 22211 1111 112344599999999999999654311 14444 35
Q ss_pred HHHHHhccceEEEe
Q 004133 703 SRMKMVFNHLFCLQ 716 (772)
Q Consensus 703 ~~l~~vF~~v~~~~ 716 (772)
..|+++|.++..+.
T Consensus 274 ~~L~~~Fg~v~~la 287 (300)
T COG2813 274 KKLKELFGNVEVLA 287 (300)
T ss_pred HHHHHhcCCEEEEE
Confidence 67888999888775
No 261
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.24 E-value=3.2e-06 Score=93.81 Aligned_cols=131 Identities=21% Similarity=0.142 Sum_probs=96.0
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEE
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~ 122 (772)
+|-+....+..+..++ .+.+||++-|=||.++.+.+..|..+||+||.|..+|+.|++++.-++ ....|++
T Consensus 201 fFlDqR~~R~~l~~~~------~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~ 274 (393)
T COG1092 201 FFLDQRDNRRALGELA------AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIV 274 (393)
T ss_pred eeHHhHHHHHHHhhhc------cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeeh
Confidence 4444455555566665 378999999999999999999998889999999999999998876554 2578999
Q ss_pred eeccCccc---ccCCCccEEEecccccc-cccCc-cchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 123 MDMTSMQV---FMDETFDVILDKGGLDA-LMEPE-LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 123 ~D~~~l~~---~~~~sfDvVi~~~~l~~-l~~~~-~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
+|+.++-. -...+||+|+....-.. -...+ .....+..++..+.++|+|||.++.++...
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99988521 12359999885322111 11111 011237889999999999999999988664
No 262
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.23 E-value=1.6e-05 Score=79.56 Aligned_cols=141 Identities=14% Similarity=0.192 Sum_probs=96.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
+.-.+++.+|+|.|.|+.-|...- -+++++|+++..++.|++..+ .-++++++++|--++..
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~P-------------- 103 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFWP-------------- 103 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT-----------------
T ss_pred cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCCC--------------
Confidence 455789999999999999998774 489999999999999999985 34789999998765521
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc-----HHHHHHHHHccCCCcEEEEEecCC--
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-----GSFLLTVKDALSEQGLFIVNLVSR-- 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~-----~~fl~~~~~~L~~~Gilv~Nl~~~-- 693 (772)
..+||+|++ ++ -..|++ ..++..+...|+|||.||+=-+..
T Consensus 104 --------------------~~~FDLIV~----SE--------VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~ 151 (201)
T PF05401_consen 104 --------------------EGRFDLIVL----SE--------VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN 151 (201)
T ss_dssp --------------------SS-EEEEEE----ES---------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred --------------------CCCeeEEEE----eh--------HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc
Confidence 367999998 22 123343 247888999999999999855421
Q ss_pred -----ChhHHHHHHHHHHHhccceEEEeecC---CceEEEEEecCC
Q 004133 694 -----SQATKDMVISRMKMVFNHLFCLQLEE---DVNLVLFGLSSE 731 (772)
Q Consensus 694 -----~~~~~~~v~~~l~~vF~~v~~~~~~~---~~N~vl~a~~~~ 731 (772)
...-.+.++..|++.|..|-.+.+.. +.+-++..+.++
T Consensus 152 c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 152 CRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLLARFRNP 197 (201)
T ss_dssp HHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEEEE--
T ss_pred ccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEeeeecCC
Confidence 11224778899999999888777643 345566666554
No 263
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.23 E-value=1.3e-05 Score=82.98 Aligned_cols=128 Identities=20% Similarity=0.160 Sum_probs=85.7
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC--
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS-- 127 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~-- 127 (772)
+...+.+.+.......+..|||+|||+|.++..++.. +...+++||.|+.+|..|.+++.... ..+..+..+++.
T Consensus 133 ~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~ 212 (328)
T KOG2904|consen 133 WVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDA 212 (328)
T ss_pred HHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccc
Confidence 3344444443322234568999999999999988876 55579999999999999977764332 245555444433
Q ss_pred --cccccCCCccEEEeccccc-------------------ccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 128 --MQVFMDETFDVILDKGGLD-------------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 128 --l~~~~~~sfDvVi~~~~l~-------------------~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
......+++|+++++-..- ++....++...+..++.-+.|+|+|||.+.+...
T Consensus 213 ~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 213 SDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1124568999999765421 1111223334478899999999999999888765
No 264
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.22 E-value=8.4e-06 Score=82.81 Aligned_cols=110 Identities=13% Similarity=0.241 Sum_probs=88.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
-++++++.||.=+|..+...+..+| ..+|+++|+|+.-.+++.+...+. .+..+++++++|.+-|.++-.
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~-------- 143 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA-------- 143 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh--------
Confidence 4678999999999966665566666 469999999999999997776332 367899999999999988752
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..+...||.+|+|+|...+ ..+++.+-++|++||+++++-
T Consensus 144 -------------------~~~~~tfDfaFvDadK~nY-------------~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 144 -------------------DGESGTFDFAFVDADKDNY-------------SNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred -------------------cCCCCceeEEEEccchHHH-------------HHHHHHHHhhcccccEEEEec
Confidence 1235789999999987643 489999999999999999864
No 265
>PLN02476 O-methyltransferase
Probab=98.22 E-value=1.3e-05 Score=85.21 Aligned_cols=102 Identities=9% Similarity=0.015 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc-ccc----cCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QVF----MDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l-~~~----~~~sfD 137 (772)
.+..+|||+|||+|..+..++.. + -..|+.+|.++..++.|++.+.+.+ .+++++.+|+.+. +.+ ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 45689999999999999999874 2 2369999999999999988876544 3699999999773 211 136899
Q ss_pred EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+|+..+ - ...+..+++.+.++|+|||.+++-
T Consensus 197 ~VFIDa----~------K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDA----D------KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECC----C------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 998533 1 123789999999999999998764
No 266
>PRK06922 hypothetical protein; Provisional
Probab=98.22 E-value=9.2e-06 Score=94.58 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=81.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.||+|+|.++..|...+|+.++++||+++.|++.|++.... ...+++++.+|+.++-....
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-~g~~ie~I~gDa~dLp~~fe------------ 484 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-EGRSWNVIKGDAINLSSSFE------------ 484 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-cCCCeEEEEcchHhCccccC------------
Confidence 35799999999999988888888999999999999999999987532 23468889999877311111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeC-----CCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDV-----DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~-----~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
+..||+|+... .+--+..+...++ =.-..+|+.+.+.|+|||.+++.-
T Consensus 485 -------------------deSFDvVVsn~vLH~L~syIp~~g~~f~~--edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 485 -------------------KESVDTIVYSSILHELFSYIEYEGKKFNH--EVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred -------------------CCCEEEEEEchHHHhhhhhcccccccccH--HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 35699998621 0000000000000 022689999999999999999863
No 267
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.22 E-value=9e-06 Score=81.56 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=84.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+.+|..||+|.|..+..|++.+|...|+++|-||+|++.|++.. +.+++..+|...|-.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p-------------- 89 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKP-------------- 89 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCC--------------
Confidence 5678999999999999999999999999999999999999998875 568999999999821
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
....|+|+..+ .-.-+ | -..+.|..+...|.|||+|++.+...
T Consensus 90 --------------------~~~~dllfaNA----vlqWl---p---dH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 90 --------------------EQPTDLLFANA----VLQWL---P---DHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred --------------------CCccchhhhhh----hhhhc---c---ccHHHHHHHHHhhCCCceEEEECCCc
Confidence 25688887632 11111 1 13678999999999999999999765
No 268
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.21 E-value=9.4e-06 Score=88.96 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=77.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|+|.+...+.+.++..++++||+++.+++.|++.+. .++++++.+|+.+. .
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~l----p------------ 173 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDL----P------------ 173 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhC----C------------
Confidence 3468999999999988888887777899999999999999999875 35688999997653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
.....||+|+... ...-+ | -....|+.+.+.|+|||.+++
T Consensus 174 -----------------~~~~sFDvVIs~~----~L~~~--~----d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 174 -----------------FPTDYADRYVSAG----SIEYW--P----DPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred -----------------CCCCceeEEEEcC----hhhhC--C----CHHHHHHHHHHhcCCCcEEEE
Confidence 1135799998721 00001 1 125689999999999999876
No 269
>PLN02823 spermine synthase
Probab=98.21 E-value=9.7e-06 Score=88.86 Aligned_cols=109 Identities=19% Similarity=0.244 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
...+||.+|+|.|..+.++.+. +..+|+.||+++.+++.+++.+.. ..++++++.+|+.+.-....++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4569999999999999988886 456899999999999999876632 2468999999998852134578999996
Q ss_pred cccccccccCccchHH-HHHHHH-HHHhccccCeEEEEE
Q 004133 142 KGGLDALMEPELGHKL-GNQYLS-EVKRLLKSGGKFVCL 178 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~-~~~~l~-ei~rvLkpGG~~ii~ 178 (772)
.. .+-..... ...+ -..+++ .+.+.|+|||++++.
T Consensus 183 D~-~dp~~~~~-~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DL-ADPVEGGP-CYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cC-CCccccCc-chhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 53 12110000 0001 346777 899999999998865
No 270
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.21 E-value=1.5e-06 Score=90.77 Aligned_cols=137 Identities=21% Similarity=0.274 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHH
Q 004133 28 KENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDM 107 (772)
Q Consensus 28 ~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a 107 (772)
++|.-..|....+.-.-.-+..|+.... ++... ..+..+||+|||+|.....- ....++|.|++...+..+
T Consensus 11 qeyVh~IYd~ia~~fs~tr~~~Wp~v~q----fl~~~--~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~a 81 (293)
T KOG1331|consen 11 QEYVHSIYDKIATHFSATRAAPWPMVRQ----FLDSQ--PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGA 81 (293)
T ss_pred HHHhHHHHHHhhhhccccccCccHHHHH----HHhcc--CCcceeeecccCCcccCcCC---Ccceeeecchhhhhcccc
Confidence 4566666665431101112333344443 33321 34789999999999876421 222489999999888777
Q ss_pred HHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 108 LRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 108 ~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
++.. ......+|+.++| +.+.+||.++...+++|+.... .+..+++++.|+|+|||..++..++..
T Consensus 82 k~~~-----~~~~~~ad~l~~p-~~~~s~d~~lsiavihhlsT~~----RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 82 KRSG-----GDNVCRADALKLP-FREESFDAALSIAVIHHLSTRE----RRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred ccCC-----CceeehhhhhcCC-CCCCccccchhhhhhhhhhhHH----HHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 4332 1167889999999 9999999999999999998743 478999999999999999888777643
No 271
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.20 E-value=4.6e-05 Score=79.02 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=80.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
...+||.||+|.|.++..+....| ..+++++|+++.+++.|++.+.-. .+++++++.+|..+.. .
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~----------- 117 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F----------- 117 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C-----------
Confidence 347899999999999999988887 679999999999999999998532 2467899988876531 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
....||+|++...-. .+. -...+|+.+.+.|+|||.+++.
T Consensus 118 --------------------~~~~~D~I~~~~~l~----~~~------~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 118 --------------------PDNSFDAVTIAFGLR----NVP------DIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred --------------------CCCCccEEEEecccc----cCC------CHHHHHHHHHHhccCCcEEEEE
Confidence 135799998732111 111 1368899999999999988764
No 272
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.20 E-value=5.9e-06 Score=84.44 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc-ccc----cCCCccE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QVF----MDETFDV 138 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l-~~~----~~~sfDv 138 (772)
...+|||+||++|.-+..++.. + -.+|+.+|+++...+.|++.+...+ .+++++.+|+.+. +.+ ..++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4679999999999999999975 2 2579999999999999988775443 3799999999873 211 1358999
Q ss_pred EEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 139 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+..+ -.. .+..+++.+.++|+|||.+++-.
T Consensus 125 VFiDa----~K~------~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----DKR------NYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----TGG------GHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----ccc------chhhHHHHHhhhccCCeEEEEcc
Confidence 98533 221 26789999999999999998754
No 273
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=6.9e-06 Score=83.59 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=86.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeE----EEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK----VHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~----v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
-.+..+|.||+-.|.|+..++..|....|.+||||+..++.|+++.-+..+.... ...+++..|..-..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~------- 129 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ------- 129 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc-------
Confidence 4568899999999999999999998889999999999999999998664332222 23444444422211
Q ss_pred cccccccccccCCCCCCCCCC--------------CCCCCceeEEEE-------eCCCCCCCCCCCcCCcCCCcHHHHHH
Q 004133 617 MSVVHGNEITSNNTRSCNGNC--------------TASNARVDILII-------DVDSPDSSSGMTCPAADFVEGSFLLT 675 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~yD~Iiv-------D~~~~d~~~g~s~Pp~~f~~~~fl~~ 675 (772)
...++.+..++...|.. .....+||+|++ -++-+| .|| ..||..
T Consensus 130 ----~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD--~GL---------~~ff~k 194 (288)
T KOG2899|consen 130 ----RNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGD--DGL---------RRFFRK 194 (288)
T ss_pred ----cccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccccc--HHH---------HHHHHH
Confidence 11111111111111110 124678999984 455555 466 899999
Q ss_pred HHHccCCCcEEEEE
Q 004133 676 VKDALSEQGLFIVN 689 (772)
Q Consensus 676 ~~~~L~~~Gilv~N 689 (772)
+.++|.|||+||+-
T Consensus 195 is~ll~pgGiLvvE 208 (288)
T KOG2899|consen 195 ISSLLHPGGILVVE 208 (288)
T ss_pred HHHhhCcCcEEEEc
Confidence 99999999999974
No 274
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.18 E-value=1e-05 Score=86.35 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=75.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||+||+|+|.....+.... +..+|++||+++.+++.|++.+.-..-++++++.+|..+. .
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l----~---------- 141 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL----P---------- 141 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC----C----------
Confidence 455799999999998776666554 4568999999999999999875211124788999986432 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+..||+|+...--. . .+ -...+++.+.+.|+|||.|++.
T Consensus 142 -------------------~~~~~fD~Vi~~~v~~-----~--~~---d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 142 -------------------VADNSVDVIISNCVIN-----L--SP---DKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred -------------------CCCCceeEEEEcCccc-----C--CC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 1135799999743111 0 01 1267899999999999999874
No 275
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.18 E-value=1.2e-05 Score=87.59 Aligned_cols=100 Identities=21% Similarity=0.179 Sum_probs=74.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...+||+||+|.|.++..+.+..+. ..|++||++|.+++.|++.+.-..-+++.++.+|+.+.+..
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~------------- 146 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE------------- 146 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-------------
Confidence 4568999999999999999887753 47999999999999999875321225689999998765322
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
...||+|+++.... +....+.+.|+|||.+++.+
T Consensus 147 --------------------~~~fD~Ii~~~g~~----------------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 --------------------FAPYDVIFVTVGVD----------------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred --------------------cCCccEEEECCchH----------------HhHHHHHHhcCCCCEEEEEe
Confidence 13599999963211 12234567899999988765
No 276
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.18 E-value=7.7e-06 Score=82.29 Aligned_cols=128 Identities=19% Similarity=0.326 Sum_probs=76.2
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeec
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDM 125 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~ 125 (772)
|-.. ..+.+.+++... .+...|-|+|||.+.++..+. .++ .|...|+-. . +-.+..+|+
T Consensus 55 WP~n---Pvd~iI~~l~~~--~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva------------~--n~~Vtacdi 113 (219)
T PF05148_consen 55 WPVN---PVDVIIEWLKKR--PKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA------------P--NPRVTACDI 113 (219)
T ss_dssp SSS----HHHHHHHHHCTS---TTS-EEEES-TT-HHHHH---S----EEEEESS-------------S--STTEEES-T
T ss_pred CCCC---cHHHHHHHHHhc--CCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC------------C--CCCEEEecC
Confidence 7554 345567777651 345799999999999997653 344 599999854 1 224778999
Q ss_pred cCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh-hhcccccc-cCCcEEEEEE
Q 004133 126 TSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHA 203 (772)
Q Consensus 126 ~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~-~~~l~~~~-~~~w~~~~~~ 203 (772)
.+.| +++++.|+++....|..- . ...++.|+.|+|||||.+.+......-. .+.+.... ..|+.+....
T Consensus 114 a~vP-L~~~svDv~VfcLSLMGT---n-----~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 114 ANVP-LEDESVDVAVFCLSLMGT---N-----WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp TS-S---TT-EEEEEEES---SS---------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred ccCc-CCCCceeEEEEEhhhhCC---C-----cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc
Confidence 9999 999999999876555332 2 7899999999999999999987654311 12222222 3367666654
No 277
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.17 E-value=2.1e-05 Score=85.51 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHc----C-CCeEEEEeCCHHHHHHHHHHhc-cCCCCcEE--EEeeccCcccc-----cCC
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNV-RDRSDMRW--RVMDMTSMQVF-----MDE 134 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~----g-~~~V~gvDiS~~~I~~a~~~~~-~~~~~v~f--~~~D~~~l~~~-----~~~ 134 (772)
++..|+|+|||+|+-+..|.+. + ...++++|+|..+++.+.++.. ...+.+++ +++|.++.-.+ ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 5678999999999887665553 2 2369999999999999998887 56676666 88888773101 123
Q ss_pred CccEEEecc-cccccccCccchHHHHHHHHHHHh-ccccCeEEEEE
Q 004133 135 TFDVILDKG-GLDALMEPELGHKLGNQYLSEVKR-LLKSGGKFVCL 178 (772)
Q Consensus 135 sfDvVi~~~-~l~~l~~~~~~~~~~~~~l~ei~r-vLkpGG~~ii~ 178 (772)
...+++.-| ++..+..++ ...+|+++++ .|+|||.|++.
T Consensus 156 ~~r~~~flGSsiGNf~~~e-----a~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPE-----AAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CccEEEEeCccccCCCHHH-----HHHHHHHHHHhhCCCCCEEEEe
Confidence 456776655 677765544 7899999999 99999998774
No 278
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.17 E-value=1.4e-05 Score=84.33 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=75.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.||+|.|.++..|... ..++++||++|.+++.|++.+. ...++++|+... .
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~----~------------ 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL----P------------ 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC----c------------
Confidence 4578999999999998888765 3689999999999999998753 246778886442 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
..+..||+|+....- ..+ + --..+|..+.+.|+|||.|++..+..
T Consensus 99 -----------------~~~~~fD~V~s~~~l----~~~--~----d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 99 -----------------LATATFDLAWSNLAV----QWC--G----NLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred -----------------CCCCcEEEEEECchh----hhc--C----CHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 113579999873211 001 1 12689999999999999999987654
No 279
>PRK08317 hypothetical protein; Provisional
Probab=98.17 E-value=2e-05 Score=81.57 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=79.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+...+ |..+++++|+++.+++.|++.... ..++++++.+|...+- .
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~--~----------- 83 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLP--F----------- 83 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCC--C-----------
Confidence 445789999999999998888877 677999999999999999988322 2457888888864420 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
....||+|+...--. .+.. ...+++.+.+.|+|||.+++-.
T Consensus 84 --------------------~~~~~D~v~~~~~~~----~~~~------~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 84 --------------------PDGSFDAVRSDRVLQ----HLED------PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred --------------------CCCCceEEEEechhh----ccCC------HHHHHHHHHHHhcCCcEEEEEe
Confidence 135799999843111 1111 2679999999999999988643
No 280
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.16 E-value=9.9e-06 Score=81.86 Aligned_cols=106 Identities=9% Similarity=-0.086 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc-ccc-cC-CCccEEEec
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-QVF-MD-ETFDVILDK 142 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l-~~~-~~-~sfDvVi~~ 142 (772)
.+.++||++||+|.++..++.+|...|+++|.++.+++.++++..... .+++++++|+.+. ..+ .. ..||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 468999999999999999999998789999999999999987765443 2588999999653 211 12 247888875
Q ss_pred ccccccccCccchHHHHHHHHHHH--hccccCeEEEEEEcC
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLA 181 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~--rvLkpGG~~ii~~~~ 181 (772)
-.+..- ....+++.+. .+|+++|.+++-+..
T Consensus 129 PPy~~~--------~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFNG--------ALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCCC--------cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 544321 1334444443 478899988776543
No 281
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.16 E-value=1.1e-05 Score=81.89 Aligned_cols=130 Identities=16% Similarity=0.182 Sum_probs=96.9
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccc
Q 004133 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 624 (772)
Q Consensus 545 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 624 (772)
-+|.||+|.|.....++...|+..+.+||+....+..|.+......-+++.++.+||..++...-.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~-------------- 85 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFP-------------- 85 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHST--------------
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhccc--------------
Confidence 689999999999999999999999999999999998887776322347899999999999988651
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHHHH
Q 004133 625 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISR 704 (772)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~ 704 (772)
+...|-|.+ .=+||-.--.-.-..+++++||..+.+.|+|||.+- +.+.+..+.+.+++.
T Consensus 86 ----------------~~~v~~i~i--~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~--~~TD~~~y~~~~~~~ 145 (195)
T PF02390_consen 86 ----------------PGSVDRIYI--NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY--FATDVEEYAEWMLEQ 145 (195)
T ss_dssp ----------------TTSEEEEEE--ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEE--EEES-HHHHHHHHHH
T ss_pred ----------------CCchheEEE--eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE--EEeCCHHHHHHHHHH
Confidence 367999988 334432111111246899999999999999999875 556778887777787
Q ss_pred HHHh
Q 004133 705 MKMV 708 (772)
Q Consensus 705 l~~v 708 (772)
+.+.
T Consensus 146 ~~~~ 149 (195)
T PF02390_consen 146 FEES 149 (195)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7774
No 282
>PRK14968 putative methyltransferase; Provisional
Probab=98.16 E-value=2.8e-05 Score=77.74 Aligned_cols=115 Identities=14% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC--CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~--~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
+..+||.+|+|.|.+...+... ..+|+++|++|.+++.|++.+... .+.++.++.+|..+.+ .
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~---------- 87 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF---R---------- 87 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc---c----------
Confidence 3468999999999999988887 469999999999999998876332 1222888888865421 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCC--CC--------CCCcCC-cCCCcHHHHHHHHHccCCCcEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS--SS--------GMTCPA-ADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~--~~--------g~s~Pp-~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
...||+|+.+.--... .. ...+.. ....-..+++.+.+.|+|+|.+++
T Consensus 88 ---------------------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 88 ---------------------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred ---------------------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 1369999974210000 00 000000 011235689999999999999988
Q ss_pred EecC
Q 004133 689 NLVS 692 (772)
Q Consensus 689 Nl~~ 692 (772)
.+.+
T Consensus 147 ~~~~ 150 (188)
T PRK14968 147 LQSS 150 (188)
T ss_pred EEcc
Confidence 7644
No 283
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.16 E-value=1.4e-05 Score=81.97 Aligned_cols=117 Identities=20% Similarity=0.155 Sum_probs=87.9
Q ss_pred hhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEE-eec
Q 004133 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRV-MDM 125 (772)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~-~D~ 125 (772)
++...++..++.. .+..+|||+|.+.|.-+.+|+.. + ..++|.+|+++++++.|++++.+.+. .+..+. +|+
T Consensus 45 ~e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 45 PETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred hhHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence 3444555555544 46789999999999999999886 3 35799999999999999988865443 477777 577
Q ss_pred cCcc-cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 126 TSMQ-VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 126 ~~l~-~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.+.- ....++||+|+. |+-. ..+..+|+.+.++|+|||.+++-..
T Consensus 122 l~~l~~~~~~~fDliFI----DadK------~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 122 LDVLSRLLDGSFDLVFI----DADK------ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHHHhccCCCccEEEE----eCCh------hhCHHHHHHHHHHhCCCcEEEEeec
Confidence 6643 134689999985 3222 2267999999999999999988543
No 284
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.16 E-value=2.1e-05 Score=68.77 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=77.7
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccc
Q 004133 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 624 (772)
Q Consensus 545 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 624 (772)
+++.+|.|.|.+...+.. .+..++.++|+++..++.+++........+++++.+|..++... .
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------- 63 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-A--------------- 63 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-c---------------
Confidence 479999999998887777 56679999999999999998433222456799999998887541 1
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 625 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+||+|+++..-... .-....+++.+.+.|+++|.+++-
T Consensus 64 ----------------~~~~d~i~~~~~~~~~---------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 ----------------DESFDVIISDPPLHHL---------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ----------------CCceEEEEEccceeeh---------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2569999985432210 124488999999999999999864
No 285
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.14 E-value=1.5e-05 Score=82.67 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCc-EEEEeeccCcccccC-----CCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQVFMD-----ETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v-~f~~~D~~~l~~~~~-----~sfDvVi~ 141 (772)
++.++||+|||+|.++..+++.|...|+++|+++.|+....+. .+++ .+...|+..+. ..+ ..+|+++.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~----~~~v~~~~~~ni~~~~-~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ----DERVKVLERTNIRYVT-PADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc----CCCeeEeecCCcccCC-HhHcCCCceeeeEEEe
Confidence 5679999999999999999999888899999999888753222 2332 24444555433 222 24444443
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
. +..++..+.+.|++ |.++..
T Consensus 150 S---------------~~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 150 S---------------LISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred e---------------hHhHHHHHHHHhCc-CeEEEE
Confidence 1 24578899999999 776554
No 286
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.13 E-value=1.9e-06 Score=88.87 Aligned_cols=109 Identities=17% Similarity=0.285 Sum_probs=73.8
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 623 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 623 (772)
.+||.+|+|||.|..-|.+.. ..|++||+.+.++++|+++-.. +|-+.--+.--++|+....
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~--dP~~~~~~~y~l~~~~~~~-------------- 152 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKM--DPVLEGAIAYRLEYEDTDV-------------- 152 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhc--Cchhccccceeeehhhcch--------------
Confidence 579999999999999998885 6899999999999999999533 3222111111122332221
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 624 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
+....+||+|++ .+.-.-+.-| .+|+..+.++|+|+|.+++-.+.|.
T Consensus 153 --------------E~~~~~fDaVvc----sevleHV~dp------~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 153 --------------EGLTGKFDAVVC----SEVLEHVKDP------QEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred --------------hhcccccceeee----HHHHHHHhCH------HHHHHHHHHHhCCCCceEeeehhhh
Confidence 111356999986 2110001112 8899999999999999998776664
No 287
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.13 E-value=1.9e-05 Score=83.51 Aligned_cols=101 Identities=23% Similarity=0.322 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc----------------------------------
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR---------------------------------- 113 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~---------------------------------- 113 (772)
.+.+||..|||-|+++..++..|+ .+.|.|+|--|+-..+=.+..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 467999999999999999999999 599999999997433211110
Q ss_pred -------CCCCcEEEEeeccCcccccC---CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEE
Q 004133 114 -------DRSDMRWRVMDMTSMQVFMD---ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVC 177 (772)
Q Consensus 114 -------~~~~v~f~~~D~~~l~~~~~---~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii 177 (772)
...++....+|+.+.- .++ ++||+|+....+|...+ +..+++.|.++|||||+.|=
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y-~~~~~~~~~d~VvT~FFIDTA~N-------i~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVY-GPDENKGSFDVVVTCFFIDTAEN-------IIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred CcccccCCCCceeEecCccEEec-CCcccCCcccEEEEEEEeechHH-------HHHHHHHHHHHhccCCEEEe
Confidence 0114556666766654 233 69999998877776544 88999999999999996654
No 288
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.12 E-value=1e-05 Score=87.29 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=69.0
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~ 129 (772)
.+...+...+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++... ..+++++++|+.+..
T Consensus 23 ~i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 344445555544 5788999999999999999998864 6999999999999998877543 357999999998876
Q ss_pred cccCCCccEEEeccccc
Q 004133 130 VFMDETFDVILDKGGLD 146 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~ 146 (772)
+ ..||+|+++...+
T Consensus 99 -~--~~~d~VvaNlPY~ 112 (294)
T PTZ00338 99 -F--PYFDVCVANVPYQ 112 (294)
T ss_pred -c--cccCEEEecCCcc
Confidence 4 3689988765443
No 289
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=2.3e-05 Score=76.65 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=93.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
...-+||+|||+|-.+..|++. +..-+.++|+++.+++..++.+..++.++..++.|+.+- +..++.|+++-+-..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~--l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG--LRNESVDVLVFNPPY 120 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh--hccCCccEEEECCCc
Confidence 4567899999999999999887 445689999999999887777766667788999998774 345899988755433
Q ss_pred cccc--------------cCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccc-cCCcEEEE
Q 004133 146 DALM--------------EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSV 201 (772)
Q Consensus 146 ~~l~--------------~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~ 201 (772)
---. ...++.+...+++..+-.+|.|.|.|+++....... +++.... ..+|..++
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p-~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP-KEILKILEKKGYGVRI 190 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH-HHHHHHHhhcccceeE
Confidence 2111 122334447888999999999999999998775433 3333322 23555554
No 290
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.11 E-value=1.2e-05 Score=86.57 Aligned_cols=162 Identities=15% Similarity=0.248 Sum_probs=98.8
Q ss_pred cceeecCC-ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHH
Q 004133 506 NQLKVYHG-YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 584 (772)
Q Consensus 506 ~~~~~d~~-~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~ 584 (772)
..+.+||+ -...-+|..--..|-++... ..+..+||.+|+|+|.|++...... ..+|.+||+||..++.|++
T Consensus 130 ~~I~idPg~AFGTG~H~TT~lcl~~l~~~------~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~ 202 (295)
T PF06325_consen 130 IVIEIDPGMAFGTGHHPTTRLCLELLEKY------VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARE 202 (295)
T ss_dssp EEEEESTTSSS-SSHCHHHHHHHHHHHHH------SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHH
T ss_pred EEEEECCCCcccCCCCHHHHHHHHHHHHh------ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHH
Confidence 45778886 44555554322222222221 1344699999999999999888874 3489999999999999999
Q ss_pred hcCCCC-CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC
Q 004133 585 YFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP 663 (772)
Q Consensus 585 ~Fg~~~-~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~P 663 (772)
+..+.. .++++++.. .+ ....+||+|+..+...
T Consensus 203 N~~~N~~~~~~~v~~~------~~-------------------------------~~~~~~dlvvANI~~~--------- 236 (295)
T PF06325_consen 203 NAELNGVEDRIEVSLS------ED-------------------------------LVEGKFDLVVANILAD--------- 236 (295)
T ss_dssp HHHHTT-TTCEEESCT------SC-------------------------------TCCS-EEEEEEES-HH---------
T ss_pred HHHHcCCCeeEEEEEe------cc-------------------------------cccccCCEEEECCCHH---------
Confidence 984321 335655310 01 1137899999866433
Q ss_pred CcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEec
Q 004133 664 AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLS 729 (772)
Q Consensus 664 p~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~ 729 (772)
.=...+..+.++|+|+|.|++.=+- .+..+.+.+.+++-| .........+++.+..+
T Consensus 237 ----vL~~l~~~~~~~l~~~G~lIlSGIl--~~~~~~v~~a~~~g~---~~~~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 237 ----VLLELAPDIASLLKPGGYLILSGIL--EEQEDEVIEAYKQGF---ELVEEREEGEWVALVFK 293 (295)
T ss_dssp ----HHHHHHHHCHHHEEEEEEEEEEEEE--GGGHHHHHHHHHTTE---EEEEEEEETTEEEEEEE
T ss_pred ----HHHHHHHHHHHhhCCCCEEEEcccc--HHHHHHHHHHHHCCC---EEEEEEEECCEEEEEEE
Confidence 1145667778889999999975332 233456677775522 23333344566665543
No 291
>PRK14967 putative methyltransferase; Provisional
Probab=98.11 E-value=1.4e-05 Score=82.78 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=82.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.+|+|.|.++..+... +..+|++||+|+.+++.|++.+... ..+++++.+|..+++.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~-~~~~~~~~~d~~~~~~---------------- 98 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLA-GVDVDVRRGDWARAVE---------------- 98 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHh-CCeeEEEECchhhhcc----------------
Confidence 468999999999998888875 3358999999999999999876321 1257889998766421
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCC-CCCCCCCCC--cCCcCC--------CcHHHHHHHHHccCCCcEEEEEec
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPDSSSGMT--CPAADF--------VEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~-~~d~~~g~s--~Pp~~f--------~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
...||+|+.+.- ......+.. .|...+ .-..+++.+.+.|++||.+++-..
T Consensus 99 ------------------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 99 ------------------FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ------------------CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 256999999641 111000000 000000 125688899999999999997443
Q ss_pred CCChhHHHHHHHHHHH
Q 004133 692 SRSQATKDMVISRMKM 707 (772)
Q Consensus 692 ~~~~~~~~~v~~~l~~ 707 (772)
... ....++..+++
T Consensus 161 ~~~--~~~~~~~~l~~ 174 (223)
T PRK14967 161 ELS--GVERTLTRLSE 174 (223)
T ss_pred ccc--CHHHHHHHHHH
Confidence 322 12334555543
No 292
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.10 E-value=7.6e-05 Score=85.34 Aligned_cols=134 Identities=13% Similarity=0.188 Sum_probs=103.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....+||.++.|-|+-+..|+..+.+ ..|+++|+++.-++..++.+ |+ .++.+...|+..+-...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~-------- 180 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAAL-------- 180 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhc--------
Confidence 34568999999999999999888754 48999999999998888665 65 45889999998763332
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC--------------CcHHHHHHHHHccCC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 682 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f--------------~~~~fl~~~~~~L~~ 682 (772)
...||.|++|+-.+. .||-.-.++. +..+.|..+.+.|+|
T Consensus 181 ------------------------~~~fD~ILvDaPCSG--~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp 234 (470)
T PRK11933 181 ------------------------PETFDAILLDAPCSG--EGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP 234 (470)
T ss_pred ------------------------hhhcCeEEEcCCCCC--CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 246999999995542 2333222221 247889999999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhccc
Q 004133 683 QGLFIVNLVSRSQATKDMVISRMKMVFNH 711 (772)
Q Consensus 683 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 711 (772)
||++|....+-+++..+.+++.+.+-++.
T Consensus 235 GG~LVYSTCT~~~eENE~vV~~~L~~~~~ 263 (470)
T PRK11933 235 GGTLVYSTCTLNREENQAVCLWLKETYPD 263 (470)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHCCC
Confidence 99999999888888888889888776664
No 293
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.09 E-value=1.5e-05 Score=81.02 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=70.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.+|+|.|.++.+|... ..+|++||++|.+++.|++...- .+-.+++.+.|...+ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~--~~------------- 91 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAR-ENLPLRTDAYDINAA--AL------------- 91 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHH-hCCCceeEeccchhc--cc-------------
Confidence 4579999999999999999875 35899999999999999876631 111266666665332 01
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDV-DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~-~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+||+|+.-. ... + ++. .-..+++.+++.|+|||.+++.
T Consensus 92 -------------------~~~fD~I~~~~~~~~-----~--~~~--~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 -------------------NEDYDFIFSTVVFMF-----L--QAG--RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred -------------------cCCCCEEEEeccccc-----C--CHH--HHHHHHHHHHHHhCCCcEEEEE
Confidence 14699998621 100 0 111 1257999999999999985543
No 294
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.08 E-value=1.5e-05 Score=85.15 Aligned_cols=95 Identities=13% Similarity=0.240 Sum_probs=72.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC---CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF---VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~---~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|.|.++..|...++. ..+++||+++.+++.|++.+ +++++.++|+.+. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~l----p--------- 146 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRL----P--------- 146 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccC----C---------
Confidence 4467999999999999988887764 37999999999999998875 3578888986542 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+..||+|+. +++ +.++..+++.|+|||.|++-..
T Consensus 147 --------------------~~~~sfD~I~~-~~~----------------~~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 147 --------------------FADQSLDAIIR-IYA----------------PCKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred --------------------CcCCceeEEEE-ecC----------------CCCHHHHHhhccCCCEEEEEeC
Confidence 11367999985 111 1235778999999999997543
No 295
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=4.7e-05 Score=81.37 Aligned_cols=164 Identities=13% Similarity=0.146 Sum_probs=102.5
Q ss_pred cceeecCC-ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHH
Q 004133 506 NQLKVYHG-YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 584 (772)
Q Consensus 506 ~~~~~d~~-~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~ 584 (772)
..+++||+ -...-||-.-...+-++ +... ..+.+||.+|+|+|.|+....... -.++.++|+||.-+++|++
T Consensus 131 ~~i~lDPGlAFGTG~HpTT~lcL~~L----e~~~--~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~e 203 (300)
T COG2264 131 LNIELDPGLAFGTGTHPTTSLCLEAL----EKLL--KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARE 203 (300)
T ss_pred eEEEEccccccCCCCChhHHHHHHHH----HHhh--cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHH
Confidence 45788997 34455664333222222 2221 467899999999999988877764 4489999999999999999
Q ss_pred hcCCCCCC-CeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC
Q 004133 585 YFGFTQDK-SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP 663 (772)
Q Consensus 585 ~Fg~~~~~-rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~P 663 (772)
..-+..-+ ..++-..+..+. ....+||+|+..+-..
T Consensus 204 Na~~N~v~~~~~~~~~~~~~~----------------------------------~~~~~~DvIVANILA~--------- 240 (300)
T COG2264 204 NARLNGVELLVQAKGFLLLEV----------------------------------PENGPFDVIVANILAE--------- 240 (300)
T ss_pred HHHHcCCchhhhcccccchhh----------------------------------cccCcccEEEehhhHH---------
Confidence 88542111 111111111111 1235799999866332
Q ss_pred CcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHHHHH-HHhccceEEEeecCCceEEEEEe
Q 004133 664 AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRM-KMVFNHLFCLQLEEDVNLVLFGL 728 (772)
Q Consensus 664 p~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l-~~vF~~v~~~~~~~~~N~vl~a~ 728 (772)
.-..+...++.+|+|||.+++.=+-.+ ..++|.+.+ +.-|..+-... ...++.+..
T Consensus 241 ----vl~~La~~~~~~lkpgg~lIlSGIl~~--q~~~V~~a~~~~gf~v~~~~~---~~eW~~i~~ 297 (300)
T COG2264 241 ----VLVELAPDIKRLLKPGGRLILSGILED--QAESVAEAYEQAGFEVVEVLE---REEWVAIVG 297 (300)
T ss_pred ----HHHHHHHHHHHHcCCCceEEEEeehHh--HHHHHHHHHHhCCCeEeEEEe---cCCEEEEEE
Confidence 115788899999999999997643333 356677777 44565544433 234555544
No 296
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.06 E-value=1.2e-05 Score=84.98 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
..+.-|||+|||+|.++...+..|.++|++|+.|+ |.+.|++..+.+. .++..+.+.+++.. + .+..|++|+-.+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdie-L-PEk~DviISEPM 252 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIE-L-PEKVDVIISEPM 252 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccccc-C-chhccEEEeccc
Confidence 35678999999999999999999999999999887 7778877665443 36889999999987 4 478999998665
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
-..+.++ ..++.++ ..++.|||.|.++
T Consensus 253 G~mL~NE----RMLEsYl-~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 253 GYMLVNE----RMLESYL-HARKWLKPNGKMF 279 (517)
T ss_pred hhhhhhH----HHHHHHH-HHHhhcCCCCccc
Confidence 4444331 1123333 4569999999875
No 297
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.06 E-value=4.1e-05 Score=85.82 Aligned_cols=106 Identities=18% Similarity=0.284 Sum_probs=77.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.++.++.+.+ +.+|++||+++.+++.|++... +..+++..+|..+. .
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~---~l~v~~~~~D~~~l----~----------- 226 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA---GLPVEIRLQDYRDL----N----------- 226 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc---cCeEEEEECchhhc----C-----------
Confidence 345689999999999999998876 4599999999999999998763 22478888886442 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
..||+|+.- ++......-.-..+++.+.+.|+|||.+++..+...
T Consensus 227 ---------------------~~fD~Ivs~--------~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 227 ---------------------GQFDRIVSV--------GMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred ---------------------CCCCEEEEe--------CchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 469999751 110000000125789999999999999998765543
No 298
>PHA03411 putative methyltransferase; Provisional
Probab=98.06 E-value=4.7e-05 Score=80.46 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=78.8
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.+|+|.|.++..+....+..+|++||++|.+++.|++.+ ++++++.+|..++..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~---------------- 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES---------------- 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----------------
Confidence 46899999999999888877766679999999999999999864 368999999988742
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCC---CCCCCcC------CcCCC-cHHHHHHHHHccCCCcEEEEEec
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDV-DSPDS---SSGMTCP------AADFV-EGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~-~~~d~---~~g~s~P------p~~f~-~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+||+||.+. +.... ...+ .+ .-..+ -..|+..+...|.|+|.+.+-..
T Consensus 124 ------------------~~kFDlIIsNPPF~~l~~~d~~~~-~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 124 ------------------NEKFDVVISNPPFGKINTTDTKDV-FEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS 184 (279)
T ss_pred ------------------cCCCcEEEEcCCccccCchhhhhh-hhhccCccccccccHHHHHhhhHheecCCceEEEEEe
Confidence 24699999843 11100 0000 00 00112 26899999999999997776544
Q ss_pred C
Q 004133 692 S 692 (772)
Q Consensus 692 ~ 692 (772)
+
T Consensus 185 s 185 (279)
T PHA03411 185 G 185 (279)
T ss_pred c
Confidence 3
No 299
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.05 E-value=2.9e-05 Score=80.76 Aligned_cols=109 Identities=12% Similarity=0.123 Sum_probs=80.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.+...+.... .+++++|+++.+++.|++.+... ..+++++.+|..++....
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~------------ 111 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALES-GLKIDYRQTTAEELAAEH------------ 111 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHc-CCceEEEecCHHHhhhhc------------
Confidence 345789999999999988887753 58999999999999999887432 225788888887765332
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
..+||+|++...-. .+.. ...+|+.+.+.|+|+|.+++....+.
T Consensus 112 --------------------~~~fD~Ii~~~~l~----~~~~------~~~~l~~~~~~L~~gG~l~v~~~~~~ 155 (233)
T PRK05134 112 --------------------PGQFDVVTCMEMLE----HVPD------PASFVRACAKLVKPGGLVFFSTLNRN 155 (233)
T ss_pred --------------------CCCccEEEEhhHhh----ccCC------HHHHHHHHHHHcCCCcEEEEEecCCC
Confidence 25799998732111 1111 26789999999999999998876544
No 300
>PLN02672 methionine S-methyltransferase
Probab=98.05 E-value=4.7e-05 Score=94.04 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=86.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC----------------CCCCeEEEEccHHHHHH
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----------------QDKSLKVHITDGIKFVR 606 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~----------------~~~rl~v~i~Dg~~~l~ 606 (772)
..+||.||+|.|+++..|...+|..+|++||++|.++++|++..... ..+|++++.+|..+.++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999999999999998889999999999999998886321 12589999999987753
Q ss_pred hhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC----CCCC---------------cCCcCC
Q 004133 607 EMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS----SGMT---------------CPAADF 667 (772)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~----~g~s---------------~Pp~~f 667 (772)
.. +.+||+|+... +.-. ..|+ .|...+
T Consensus 199 ~~--------------------------------~~~fDlIVSNP--PYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL 244 (1082)
T PLN02672 199 DN--------------------------------NIELDRIVGCI--PQILNPNPEAMSKLVTENASEEFLYSLSNYCAL 244 (1082)
T ss_pred cc--------------------------------CCceEEEEECC--CcCCCcchhhcChhhhhccccccccccCccccc
Confidence 21 13589988622 1000 0110 011222
Q ss_pred Cc-----------HHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 668 VE-----------GSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 668 ~~-----------~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
.. ..++..+.+.|+|+|.+++++-.+..+
T Consensus 245 ~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~ 284 (1082)
T PLN02672 245 QGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQ 284 (1082)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence 22 677888888999999999999655444
No 301
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.04 E-value=3e-05 Score=84.35 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=76.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-CCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....++|.||+|.|.++..+.+.+|..+++++|+ |.+++.|+++..- ...+|++++.+|..+. ..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~~----------- 213 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SY----------- 213 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--CC-----------
Confidence 4557999999999999999999999999999998 7899999887521 1257899999997542 11
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+|+|++-- . +..-+. =.-..+|+.+.+.|+|||.+++-
T Consensus 214 ----------------------~~~D~v~~~~--~-----lh~~~~-~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 214 ----------------------PEADAVLFCR--I-----LYSANE-QLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred ----------------------CCCCEEEeEh--h-----hhcCCh-HHHHHHHHHHHHhcCCCCEEEEE
Confidence 2369887611 0 000000 01146899999999999998765
No 302
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.04 E-value=6e-05 Score=79.83 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=80.3
Q ss_pred CCeEEEEcCCCchhH----HHHHHcC------CCeEEEEeCCHHHHHHHHHHh-----c--------------cC--C--
Q 004133 69 PPQILVPGCGNSRLS----EHLYDAG------FHGITNVDFSKVVISDMLRRN-----V--------------RD--R-- 115 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls----~~La~~g------~~~V~gvDiS~~~I~~a~~~~-----~--------------~~--~-- 115 (772)
..+|.-.||++|.-. ..|.+.+ .-+|+++|+|..+|+.|+.-. . +. +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 679999999999644 3333332 136999999999999987321 0 00 0
Q ss_pred -------CCcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 116 -------SDMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 116 -------~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..+.|...|+.+.+ +..+.||+|+|..+|-++..+. ..++++.++..|+|||++++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~-~~~~~fD~IfCRNVLIYFd~~~-----q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDS-PFLGKFDLIFCRNVLIYFDEET-----QERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCc-cccCCCCEEEEcceEEeeCHHH-----HHHHHHHHHHHhCCCCEEEEcc
Confidence 24778888888766 5667899999999999996543 6899999999999999998764
No 303
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.02 E-value=2.4e-05 Score=89.05 Aligned_cols=101 Identities=21% Similarity=0.240 Sum_probs=72.6
Q ss_pred CCeEEEEcCCCchhHHHHHHcC-----CCeEEEEeCCHHHHHHHHHHhc--cCCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 69 PPQILVPGCGNSRLSEHLYDAG-----FHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g-----~~~V~gvDiS~~~I~~a~~~~~--~~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
+..|||+|||+|-++...++.+ ..+|++|+-++.++...+++.. .....++++.+|+++.. .....|+||+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~--lpekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE--LPEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC--HSS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC--CCCceeEEEE
Confidence 4689999999999998777664 4579999999998877655522 23467999999999998 3459999997
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
-.+= .+.+.|- ....|....|.|||||+++
T Consensus 265 ElLG-sfg~nEl----~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLG-SFGDNEL----SPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---B-TTBTTTS----HHHHHHHGGGGEEEEEEEE
T ss_pred eccC-Ccccccc----CHHHHHHHHhhcCCCCEEe
Confidence 5543 3333231 5567888999999999886
No 304
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.02 E-value=1.2e-05 Score=85.61 Aligned_cols=45 Identities=36% Similarity=0.476 Sum_probs=38.6
Q ss_pred CCCCeEEEEccccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHHh
Q 004133 541 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 585 (772)
Q Consensus 541 ~~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiDp~v~~vA~~~ 585 (772)
+.+.+|+.+|+|+| +|++.|.+.++ ..+|+++|+|+.+++.|++-
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 45689999999999 57888888765 46899999999999999974
No 305
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.02 E-value=5.5e-05 Score=79.60 Aligned_cols=108 Identities=18% Similarity=0.218 Sum_probs=87.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-C--CCeEEEEeCCHHHHHHHHHHhccCCC-Cc-EEEEeeccCcccc--cCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-G--FHGITNVDFSKVVISDMLRRNVRDRS-DM-RWRVMDMTSMQVF--MDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g--~~~V~gvDiS~~~I~~a~~~~~~~~~-~v-~f~~~D~~~l~~~--~~~sfDvVi 140 (772)
.+.+||||.||.|+........ + ..+|...|+|+..|+..++.....+. ++ +|.++|+.+...+ .+...++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 5689999999999988776655 3 35799999999999999887765543 44 9999999985422 245679999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..|.++.+.+.+ .+...+..+.+.|.|||++|...
T Consensus 215 VsGL~ElF~Dn~----lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELFPDND----LVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhCCcHH----HHHHHHHHHHHHhCCCcEEEEcC
Confidence 999999887643 36778999999999999998775
No 306
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.01 E-value=7.8e-05 Score=77.27 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=95.1
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.+-+|.||+|.|.....++...|+..+.+||+-..++..|-+...-..-++++++.+||.+++.....
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~------------ 116 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIP------------ 116 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCC------------
Confidence 35789999999999999999999999999999999999988877322223899999999999999761
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
+...|-|.+ +=+||..---=--..++.++|++.+++.|+|||.|-+= +.+..+.+.
T Consensus 117 ------------------~~sl~~I~i--~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a--TD~~~y~e~ 172 (227)
T COG0220 117 ------------------DGSLDKIYI--NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA--TDNEEYFEW 172 (227)
T ss_pred ------------------CCCeeEEEE--ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE--ecCHHHHHH
Confidence 347888887 33554211100013599999999999999999999853 455555444
No 307
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.01 E-value=6.6e-05 Score=83.49 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=85.3
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHHhcCCC--CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiDp~v~~vA~~~Fg~~--~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
.++||-+=.=+|+.+.+.... ++ +|+.||++...+++|++++.+. ...+.+++++|+++|++....
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~--------- 286 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER--------- 286 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh---------
Confidence 589999999999887655544 34 9999999999999999999554 356799999999999999762
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.+.+||+||+|--+=.-+..+. ....=--...+..+.++|+|||++++-..++
T Consensus 287 --------------------~g~~fDlIilDPPsF~r~k~~~-~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 287 --------------------RGEKFDLIILDPPSFARSKKQE-FSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred --------------------cCCcccEEEECCcccccCcccc-hhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 3578999999642211110000 0000012456777888999999998755444
No 308
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.01 E-value=8.5e-05 Score=76.47 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=83.3
Q ss_pred ccCCCCeEEEEcccccHHHHHHHHhCCC------CcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhc
Q 004133 539 SVGKSVKAVVIGLGAGLLPMFLHECMPF------VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 539 ~~~~~~~vLviGlG~G~l~~~L~~~~p~------~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
..+...++|.+++|+|-++--+.++.+. .+|+++||+|.|+.++++.- ++.++.++.++.+||.+. .
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L----p 172 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL----P 172 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC----C
Confidence 4566689999999999777767776665 69999999999999999887 888888999999999774 1
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 610 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+..||+..+-- .- -...-| ...|+.+.+.|+|||.|.+=
T Consensus 173 -----------------------------Fdd~s~D~yTiaf-GI---RN~th~------~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 173 -----------------------------FDDDSFDAYTIAF-GI---RNVTHI------QKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred -----------------------------CCCCcceeEEEec-ce---ecCCCH------HHHHHHHHHhcCCCcEEEEE
Confidence 1246788887621 11 111112 67899999999999988843
No 309
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.00 E-value=4.8e-05 Score=75.33 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=51.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...++|.||.|.|.++..+... ..++++||+|+.+++.+++.+.- .++++++.+|+.++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~ 71 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKF 71 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcC
Confidence 3468999999999999999887 35899999999999999999853 46899999999876
No 310
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.98 E-value=4.4e-05 Score=80.21 Aligned_cols=113 Identities=15% Similarity=0.018 Sum_probs=83.8
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l 128 (772)
...++..++.. ....+|||+|+++|.-+..++.. + -.+|+.+|+++...+.|++.....+ .+++++.+|+.+.
T Consensus 67 ~g~lL~~l~~~---~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~ 143 (247)
T PLN02589 67 EGQFLNMLLKL---INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV 143 (247)
T ss_pred HHHHHHHHHHH---hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH
Confidence 33444444443 35679999999999999988875 2 2479999999999999988776543 5799999998773
Q ss_pred -cccc-----CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 129 -QVFM-----DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 129 -~~~~-----~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+.+. .++||+|+..+ - ...+..+++.+.++|+|||.+++-
T Consensus 144 L~~l~~~~~~~~~fD~iFiDa----d------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIFVDA----D------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHhccccCCcccEEEecC----C------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 2111 36899998532 2 222678999999999999998763
No 311
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.97 E-value=4.7e-05 Score=78.58 Aligned_cols=108 Identities=12% Similarity=0.132 Sum_probs=79.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.||+|.|.+...+.... .+++++|+++.+++.|++.+.-....++++..+|+.++....
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~------------- 109 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG------------- 109 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-------------
Confidence 46789999999999888777654 469999999999999999875322226888889988774331
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
..+||+|++.-.-. .+.. ...+|+.+.+.|+++|.+++....+
T Consensus 110 -------------------~~~~D~i~~~~~l~----~~~~------~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 110 -------------------AKSFDVVTCMEVLE----HVPD------PQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred -------------------CCCccEEEehhHHH----hCCC------HHHHHHHHHHhcCCCcEEEEEecCC
Confidence 25799998732111 1111 2679999999999999998876544
No 312
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.97 E-value=3.6e-05 Score=79.08 Aligned_cols=121 Identities=20% Similarity=0.318 Sum_probs=83.0
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCC
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDE 134 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~ 134 (772)
..+.+.|... .....|-|+|||.+.++. .. ...|+..|+-. .+-.++.+|+.+.| ++|+
T Consensus 169 d~ii~~ik~r--~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a--------------~~~~V~~cDm~~vP-l~d~ 227 (325)
T KOG3045|consen 169 DVIIRKIKRR--PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA--------------VNERVIACDMRNVP-LEDE 227 (325)
T ss_pred HHHHHHHHhC--cCceEEEecccchhhhhh---cc-ccceeeeeeec--------------CCCceeeccccCCc-CccC
Confidence 3445555441 346789999999999886 22 34699999743 24467889999999 9999
Q ss_pred CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh-hhcccccc-cCCcEEEEEEc
Q 004133 135 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHAI 204 (772)
Q Consensus 135 sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~-~~~l~~~~-~~~w~~~~~~~ 204 (772)
+.|+++....|.. . . +..++.|+.|+|++||.+++........ ...+.+.+ ..|+.+....+
T Consensus 228 svDvaV~CLSLMg--t-n-----~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 228 SVDVAVFCLSLMG--T-N-----LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred cccEEEeeHhhhc--c-c-----HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhh
Confidence 9999886544422 1 1 7899999999999999999987553211 11233333 33666655554
No 313
>PHA03412 putative methyltransferase; Provisional
Probab=97.97 E-value=4.1e-05 Score=79.18 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCeEEEEcccccHHHHHHHHhC---CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 543 SVKAVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~---p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
..+||.+|+|+|.++..+.+.. +..+|++||||+.++++|++.. +++.++.+|...+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~ 109 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTT 109 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcc
Confidence 5799999999999999888764 3569999999999999999764 3588999998754
No 314
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.96 E-value=2e-05 Score=82.87 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=91.3
Q ss_pred cCCCCHHHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHH
Q 004133 23 GDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (772)
Q Consensus 23 ~~f~~~~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~ 102 (772)
..|....|-+.+|.... +...+ ..-.......+.+.+.. +...+.++||+|||+-.....-+..-+.+|+..|+++.
T Consensus 14 ~~FdP~~Yl~~yY~~~~-~~~~~-~~~~~~~L~~l~~~f~~-g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~ 90 (256)
T PF01234_consen 14 EEFDPRAYLDTYYSFPS-GDDAE-DEILLFFLKNLHETFSS-GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQ 90 (256)
T ss_dssp HHB-HHHHHHHHHSTSS-S-CHH-HHHHHHHHHHHHHHHHT-SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHH
T ss_pred hcCCHHHHHHHhcCCCc-cCccc-chhHHHHHHHHHHHhCc-cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHh
Confidence 34666677777776442 11110 00001122233333432 12346799999999965543333335678999999999
Q ss_pred HHHHHHHHhccCC-----------------------------CCc-EEEEeeccCcccccC-----CCccEEEecccccc
Q 004133 103 VISDMLRRNVRDR-----------------------------SDM-RWRVMDMTSMQVFMD-----ETFDVILDKGGLDA 147 (772)
Q Consensus 103 ~I~~a~~~~~~~~-----------------------------~~v-~f~~~D~~~l~~~~~-----~sfDvVi~~~~l~~ 147 (772)
-++..++...... ..+ .++..|+++.+.+.. ..||+|++..+|++
T Consensus 91 N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~ 170 (256)
T PF01234_consen 91 NREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLES 170 (256)
T ss_dssp HHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHH
T ss_pred hHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHH
Confidence 9987765543211 013 366788888652332 25999999999998
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
...+. ....++++++.++|||||.|++....
T Consensus 171 a~~d~---~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 171 ACKDL---DEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp H-SSH---HHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HcCCH---HHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 86533 23889999999999999999998654
No 315
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=4e-05 Score=76.68 Aligned_cols=113 Identities=14% Similarity=0.191 Sum_probs=83.8
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C--CCeEEEEeCCHHHHHHHHHHhccCC-----------CC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G--FHGITNVDFSKVVISDMLRRNVRDR-----------SD 117 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g--~~~V~gvDiS~~~I~~a~~~~~~~~-----------~~ 117 (772)
.+...+.++|... ..|+.++||+|.|+|.++..++.. | +.+.+|||.-+..++.++++..+.. .+
T Consensus 67 ~mha~~le~L~~~-L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 67 HMHATALEYLDDH-LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHHHh-hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 3444444554410 158999999999999999888754 3 3345999999999999987764322 46
Q ss_pred cEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 118 MRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 118 v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+.++++|..... -+...||.|..... ..+..+++...|++||++++-.
T Consensus 146 l~ivvGDgr~g~-~e~a~YDaIhvGAa-------------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGY-AEQAPYDAIHVGAA-------------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccC-CccCCcceEEEccC-------------ccccHHHHHHhhccCCeEEEee
Confidence 889999999876 67889999987522 2356678888999999998754
No 316
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.95 E-value=2.9e-05 Score=79.95 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=73.1
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC------------CCCCeEEEEccHHHHHHhhc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~------------~~~rl~v~i~Dg~~~l~~~~ 609 (772)
...+||++|+|.|--+.+|+.+ +..|++||++|..++.|.+.-++. ...+++++++|..++-...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~- 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD- 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc-
Confidence 3469999999999999999886 358999999999999876555542 2357888899887751110
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 610 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
...||.|+- . . .-+. -|+. .-..+++.+.+.|+|||.+++
T Consensus 111 -------------------------------~~~fD~i~D-~--~---~~~~-l~~~-~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 111 -------------------------------LGPVDAVYD-R--A---ALIA-LPEE-MRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred -------------------------------CCCcCEEEe-c--h---hhcc-CCHH-HHHHHHHHHHHHcCCCCeEEE
Confidence 145888753 1 1 0011 1222 235699999999999996443
No 317
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.94 E-value=2.7e-05 Score=83.96 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=72.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
+.+||.||+|.|..+.+|... ..+|++||+++.+++.|++...-. .-++++...|....- .
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~-~l~v~~~~~D~~~~~--~-------------- 181 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE-NLNIRTGLYDINSAS--I-------------- 181 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc-CCceEEEEechhccc--c--------------
Confidence 458999999999999999875 369999999999999998876321 225788888764420 0
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
..+||+|+.-..- +..++. .-..+++.+.+.|+|||++++
T Consensus 182 ------------------~~~fD~I~~~~vl------~~l~~~--~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 182 ------------------QEEYDFILSTVVL------MFLNRE--RIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ------------------cCCccEEEEcchh------hhCCHH--HHHHHHHHHHHhcCCCcEEEE
Confidence 2579999872100 000111 125789999999999998665
No 318
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.94 E-value=5.7e-05 Score=77.28 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=49.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHH
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 603 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~ 603 (772)
+.+.+||.||+|.|.+...|...+|..++++||+++.+++.|++++ ++++++.+|+.+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~ 99 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD 99 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC
Confidence 4557899999999999999999888889999999999999999875 246788888654
No 319
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.93 E-value=0.0001 Score=68.42 Aligned_cols=102 Identities=27% Similarity=0.358 Sum_probs=73.6
Q ss_pred EEEEcCCCchhHHHHHHcCC--CeEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeeccC--cccccC-CCccEEEeccc
Q 004133 72 ILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTS--MQVFMD-ETFDVILDKGG 144 (772)
Q Consensus 72 ILDlGCG~G~ls~~La~~g~--~~V~gvDiS~~~I~~a~~~~~~~~~~--v~f~~~D~~~--l~~~~~-~sfDvVi~~~~ 144 (772)
+||+|||+|... .+..... ..++++|+++.++..++..... ... +.+...|... ++ +.. ..||++ ....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLP-FEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCC-CCCCCceeEE-eeee
Confidence 999999999976 3333321 2689999999999885544422 222 6889999887 66 666 489999 4444
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
..+... ....+.++.++|+|+|.+++.......
T Consensus 128 ~~~~~~-------~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 128 VLHLLP-------PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred ehhcCC-------HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 433322 368999999999999999998776443
No 320
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.93 E-value=3.2e-05 Score=77.72 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=82.4
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccC-c
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTS-M 128 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~-l 128 (772)
.+.+.+..++... .-++.++||+-||+|.++.+.+.+|...|+.||.++.+++.++++...-.. .++.+++|+.. +
T Consensus 27 rvrealFniL~~~-~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l 105 (183)
T PF03602_consen 27 RVREALFNILQPR-NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL 105 (183)
T ss_dssp HHHHHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH
T ss_pred HHHHHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH
Confidence 3444444444421 025799999999999999999999999999999999999999887754332 47888888654 2
Q ss_pred ccc--cCCCccEEEecccccccccCccchHHHHHHHHHHH--hccccCeEEEEEEcCc
Q 004133 129 QVF--MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLAE 182 (772)
Q Consensus 129 ~~~--~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~--rvLkpGG~~ii~~~~~ 182 (772)
... ....||+|+..-....-. .+..+++.+. .+|+++|.+++-+...
T Consensus 106 ~~~~~~~~~fDiIflDPPY~~~~-------~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 106 LKLAKKGEKFDIIFLDPPYAKGL-------YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHCTS-EEEEEE--STTSCH-------HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HhhcccCCCceEEEECCCcccch-------HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 211 468999998644333211 0366777776 8999999998887554
No 321
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.93 E-value=0.00024 Score=77.39 Aligned_cols=174 Identities=15% Similarity=0.240 Sum_probs=102.6
Q ss_pred ccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--------CCCeEEEEeCCHHHHHHHHHHhccCC---
Q 004133 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------GFHGITNVDFSKVVISDMLRRNVRDR--- 115 (772)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--------g~~~V~gvDiS~~~I~~a~~~~~~~~--- 115 (772)
|-....+..++.+++.. .++.+|||++||+|.+...+.+. ...+++|+|+++.++..++-+..-..
T Consensus 28 ~~TP~~i~~l~~~~~~~---~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLNP---KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp C---HHHHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred eehHHHHHHHHHhhhhc---cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 44556788888888865 56778999999999998877662 33479999999999988765542222
Q ss_pred CCcEEEEeeccCccccc-CCCccEEEeccccccc--ccCc---cc---------hHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 116 SDMRWRVMDMTSMQVFM-DETFDVILDKGGLDAL--MEPE---LG---------HKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 116 ~~v~f~~~D~~~l~~~~-~~sfDvVi~~~~l~~l--~~~~---~~---------~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
....+...|....+.+. ...||+|+++..+... .... +. ...--.++..+.+.|++||++.++.-
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 23468888887655222 5789999987776544 1100 00 01123588999999999999877653
Q ss_pred Cch--------hhhhcccccccCCcEEEEEEcCCCCCCCCCcceEEEEEEecCC
Q 004133 181 AES--------HVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 226 (772)
Q Consensus 181 ~~~--------~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~~~ 226 (772)
..- .+++.++.. .+...+..++..-=.....+..+.+++|.+.
T Consensus 185 ~~~L~~~~~~~~iR~~ll~~---~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 185 NGFLFSSSSEKKIRKYLLEN---GYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp HHHHHGSTHHHHHHHHHHHH---EEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred chhhhccchHHHHHHHHHhh---chhhEEeecccceecccCcCceEEEEeeccc
Confidence 211 122223322 3444555565321123667788888888764
No 322
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.92 E-value=0.00011 Score=81.78 Aligned_cols=122 Identities=15% Similarity=0.152 Sum_probs=77.1
Q ss_pred CeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCc-cccc--------------C
Q 004133 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSM-QVFM--------------D 133 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l-~~~~--------------~ 133 (772)
.+|||++||+|.++..+++. ...|+++|+++.+++.++++....+. +++|+++|+.+. +.+. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999988775 55899999999999999887654433 799999999773 1011 1
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCC
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 206 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~ 206 (772)
..||+|+..-.-.- ...++++.+.+ |++ ++.++.....+.+.+.. +..+|.+.-....+
T Consensus 287 ~~~D~v~lDPPR~G---------~~~~~l~~l~~---~~~-ivyvSC~p~tlarDl~~-L~~gY~l~~v~~~D 345 (362)
T PRK05031 287 YNFSTIFVDPPRAG---------LDDETLKLVQA---YER-ILYISCNPETLCENLET-LSQTHKVERFALFD 345 (362)
T ss_pred CCCCEEEECCCCCC---------CcHHHHHHHHc---cCC-EEEEEeCHHHHHHHHHH-HcCCcEEEEEEEcc
Confidence 25898875333111 12455555544 544 55555554444433322 11256555444333
No 323
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.91 E-value=3e-05 Score=80.11 Aligned_cols=104 Identities=16% Similarity=0.075 Sum_probs=74.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC------------CCCCeEEEEccHHHHHHhhc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~------------~~~rl~v~i~Dg~~~l~~~~ 609 (772)
...+||++|+|.|.-+.+|+.+ +.+|++||++|..++.|.+.-++. ...+++++++|..++-...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~- 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD- 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc-
Confidence 3469999999999999999886 358999999999999876554443 2467889999987762110
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 610 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
...||.|+- .. .-+..||.. -..+++.+.++|+|||.++
T Consensus 114 -------------------------------~~~fd~v~D---~~---~~~~l~~~~--R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 114 -------------------------------LADVDAVYD---RA---ALIALPEEM--RERYVQQLAALLPAGCRGL 152 (218)
T ss_pred -------------------------------CCCeeEEEe---hH---hHhhCCHHH--HHHHHHHHHHHcCCCCeEE
Confidence 146888873 11 112223322 4789999999999998533
No 324
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.89 E-value=0.00022 Score=77.38 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=75.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
+.+.+||.+|+|+|..+..|...++ ..++++||++++|++.|++...-. +.-++..+++|..+.+.-...
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~-------- 133 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPE-------- 133 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcc--------
Confidence 3457899999999999998888876 579999999999999998876311 223466688997765332210
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
.......+++.+. . .+.. ++.. ...||+.+++.|+|||.|++-+
T Consensus 134 --------------------~~~~~~~~~~~gs--~---~~~~-~~~e--~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 134 --------------------PAAGRRLGFFPGS--T---IGNF-TPEE--AVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred --------------------cccCCeEEEEecc--c---ccCC-CHHH--HHHHHHHHHHhcCCCCEEEEec
Confidence 0011223333321 1 1111 1111 2579999999999999999655
No 325
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.88 E-value=8.2e-05 Score=72.00 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=70.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+||.||+|.|.+...++... . ++++||+++.+++. ..+.....+.... .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~-~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~--~------------- 73 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG-F-EVTGVDISPQMIEK----------RNVVFDNFDAQDP--P------------- 73 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT-S-EEEEEESSHHHHHH----------TTSEEEEEECHTH--H-------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC-C-EEEEEECCHHHHhh----------hhhhhhhhhhhhh--h-------------
Confidence 567899999999999999887764 3 99999999999998 1112222222111 0
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCCh
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 695 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 695 (772)
.....||+|++- +.-..+.- -..+|+.+++.|+|||++++....+..
T Consensus 74 ------------------~~~~~fD~i~~~----~~l~~~~d------~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 74 ------------------FPDGSFDLIICN----DVLEHLPD------PEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp ------------------CHSSSEEEEEEE----SSGGGSSH------HHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred ------------------ccccchhhHhhH----HHHhhccc------HHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 013689999972 11111211 378999999999999999999987753
No 326
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.88 E-value=0.00015 Score=80.54 Aligned_cols=122 Identities=13% Similarity=0.141 Sum_probs=77.5
Q ss_pred CeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcc-c------c--cC------
Q 004133 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ-V------F--MD------ 133 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~-~------~--~~------ 133 (772)
.+|||++||+|.++..|++. ...|+|+|+++.+++.++++....+. +++|+++|+.+.- . + ..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 47999999999999988876 45899999999999999887755443 6899999998742 0 0 01
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCC
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 206 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~ 206 (772)
..||+|+..-. ..+ ....+++.+.+ |+ .++.++.....+.+.+-... .+|.+......+
T Consensus 278 ~~~d~v~lDPP-------R~G--~~~~~l~~l~~---~~-~ivYvsC~p~tlaRDl~~L~-~~Y~l~~v~~~D 336 (353)
T TIGR02143 278 YNCSTIFVDPP-------RAG--LDPDTCKLVQA---YE-RILYISCNPETLKANLEQLS-ETHRVERFALFD 336 (353)
T ss_pred CCCCEEEECCC-------CCC--CcHHHHHHHHc---CC-cEEEEEcCHHHHHHHHHHHh-cCcEEEEEEEcc
Confidence 13788775322 111 12455555544 54 55556555555555433222 235555544433
No 327
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.88 E-value=4.9e-05 Score=79.65 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=72.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+++.||.|.|.++.-+.+.+|+++++++|+ |.|++.|++ .+|++++-+|-. ...
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f---~~~------------ 156 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF---DPL------------ 156 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT---TCC------------
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH---hhh------------
Confidence 4557899999999999999999999999999999 999999999 689999999865 232
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCC--cEEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ--GLFIVN 689 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~--Gilv~N 689 (772)
+. +|++++=--=.+ . |+. --...|++++..|+|| |.++|.
T Consensus 157 --------------------P~-~D~~~l~~vLh~----~--~d~--~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 157 --------------------PV-ADVYLLRHVLHD----W--SDE--DCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp --------------------SS-ESEEEEESSGGG----S---HH--HHHHHHHHHHHHSEECTTEEEEEE
T ss_pred --------------------cc-ccceeeehhhhh----c--chH--HHHHHHHHHHHHhCCCCCCeEEEE
Confidence 23 999997110000 0 000 1256799999999988 877654
No 328
>PRK05785 hypothetical protein; Provisional
Probab=97.87 E-value=0.00017 Score=75.06 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=65.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+.+||.||+|+|.++..|.+.+ ..+|++||+++.|++.|++.- ..+++|+.+. .
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l----p------------ 105 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL----P------------ 105 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc--------ceEEechhhC----C------------
Confidence 46799999999999999998886 469999999999999998741 2456776542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ 683 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~ 683 (772)
..+.+||+|++-. .-..+.. -+..++.+++.|+|.
T Consensus 106 -----------------~~d~sfD~v~~~~----~l~~~~d------~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 106 -----------------FRDKSFDVVMSSF----ALHASDN------IEKVIAEFTRVSRKQ 140 (226)
T ss_pred -----------------CCCCCEEEEEecC----hhhccCC------HHHHHHHHHHHhcCc
Confidence 1247899999811 1111111 267999999999994
No 329
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.86 E-value=5.4e-06 Score=92.89 Aligned_cols=99 Identities=22% Similarity=0.288 Sum_probs=69.1
Q ss_pred CeEEEEcCCCchhHHHHHHcCCCe--EEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 70 PQILVPGCGNSRLSEHLYDAGFHG--ITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~g~~~--V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
..+||+|||.|.++.+|.+++... +.--|..+..++.|.++- ...-+-.+--..+| |++++||+|.+..++..
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG----vpa~~~~~~s~rLP-fp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG----VPAMIGVLGSQRLP-FPSNAFDMVHCSRCLIP 193 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC----cchhhhhhcccccc-CCccchhhhhccccccc
Confidence 478999999999999999986421 111244445555554332 22222233345789 99999999999888765
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
....+ ..+|-++-|+|+|||+|+...
T Consensus 194 W~~~~------g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 194 WHPND------GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred chhcc------cceeehhhhhhccCceEEecC
Confidence 54432 358899999999999988764
No 330
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.85 E-value=0.00011 Score=80.42 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=73.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHH---HhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAE---DYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~---~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|.|.++..+....+. .|++||+++.++..++ ++.+ .+.+++++.+|..++ .
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~l----p--------- 185 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQL----P--------- 185 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHC----C---------
Confidence 3478999999999999888887654 6999999999886432 3333 256799998886543 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
. ...||+|++= ....-+..| ..+|+.+++.|+|||.|++..
T Consensus 186 --------------------~-~~~FD~V~s~----~vl~H~~dp------~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 --------------------A-LKAFDTVFSM----GVLYHRRSP------LDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred --------------------C-cCCcCEEEEC----ChhhccCCH------HHHHHHHHHhcCCCcEEEEEE
Confidence 0 2569999961 000011112 679999999999999999864
No 331
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.85 E-value=1.8e-05 Score=87.27 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=90.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++.+++|+|||-|..+.+++..+...++|+|+++.-+..+....... .....++..|+.+++ |++++||.+....+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-FEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-CCccccCcEEEEee
Confidence 567799999999999999998876567999999998887775544322 224567999999999 99999999999999
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..|..+ ....++|++|+++|||++++..+.
T Consensus 188 ~~~~~~-------~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 188 VCHAPD-------LEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cccCCc-------HHHHHHHHhcccCCCceEEeHHHH
Confidence 999877 569999999999999999987655
No 332
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.85 E-value=0.00036 Score=74.77 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=85.6
Q ss_pred ccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC--CC
Q 004133 514 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QD 591 (772)
Q Consensus 514 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~--~~ 591 (772)
||..--.+.++...+ +.++||.+=.=+|+...+.... +-.+|+.||++...+++|++.+.+. +.
T Consensus 108 FlDqR~nR~~v~~~~-------------~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~ 173 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA-------------KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDL 173 (286)
T ss_dssp -GGGHHHHHHHHHHC-------------TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CC
T ss_pred cHHHHhhHHHHHHHc-------------CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 555666777775532 3479999999999888776543 3348999999999999999998443 34
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCC-Cc-
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VE- 669 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f-~~- 669 (772)
++++++.+|+.+|+++... ..+||+||+|--+=. ...| +.
T Consensus 174 ~~~~~~~~Dvf~~l~~~~~------------------------------~~~fD~IIlDPPsF~--------k~~~~~~~ 215 (286)
T PF10672_consen 174 DRHRFIQGDVFKFLKRLKK------------------------------GGRFDLIILDPPSFA--------KSKFDLER 215 (286)
T ss_dssp TCEEEEES-HHHHHHHHHH------------------------------TT-EEEEEE--SSEE--------SSTCEHHH
T ss_pred cceEEEecCHHHHHHHHhc------------------------------CCCCCEEEECCCCCC--------CCHHHHHH
Confidence 6899999999999987641 358999999752211 1111 12
Q ss_pred --HHHHHHHHHccCCCcEEEEEecCC
Q 004133 670 --GSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 670 --~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
...+..+.++|+|||+|++-..+.
T Consensus 216 ~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 216 DYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 345777888899999987655433
No 333
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.85 E-value=0.00017 Score=72.86 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=77.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
..++|.+++|+|+++..+..... .+|++||+|+..++++++.+... -.++++++.+|+.++++....
T Consensus 50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~----------- 117 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK----------- 117 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-----------
Confidence 46899999999999988887754 38999999999999999887322 135799999999999866431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHH--ccCCCcEEEEEec
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD--ALSEQGLFIVNLV 691 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~--~L~~~Gilv~Nl~ 691 (772)
....||+|++|-.-. .-.....++.+.+ .|+++|++|+--.
T Consensus 118 ------------------~~~~~dvv~~DPPy~-----------~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 118 ------------------KPTFDNVIYLDPPFF-----------NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred ------------------cCCCceEEEECcCCC-----------CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 123489999843111 1123455555543 5899999997653
No 334
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00025 Score=71.80 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-------cccCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------VFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------~~~~~sfD 137 (772)
.++..|+||||-.|.++..+++. |. ..|+++|+.| + ...+++.++++|+++-+ .+....+|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-----~-----~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-----M-----KPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-----c-----ccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 57899999999999999999887 32 2499999988 2 33457999999999855 23445679
Q ss_pred EEEecccccccc----cCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 138 VILDKGGLDALM----EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 138 vVi~~~~l~~l~----~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
+|++-..-..-- +......+...+++-+..+|+|||.|++-.|-...
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 999654431100 10001123667788888999999999998876543
No 335
>PRK06202 hypothetical protein; Provisional
Probab=97.82 E-value=0.00027 Score=73.61 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=75.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHh----CCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC----MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~----~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
..+.+||.||+|+|.++..|... .+..+|++||++|.+++.|++.... +++++++.|+-.. .. .
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~l-~~-~------- 126 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---PGVTFRQAVSDEL-VA-E------- 126 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---CCCeEEEEecccc-cc-c-------
Confidence 45679999999999988888754 3456999999999999999987642 3466666654332 11 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
+.+||+|++-. .-.- ++++. -..+|+.+.+.++ |.+++|-..+...
T Consensus 127 ------------------------~~~fD~V~~~~----~lhh--~~d~~--~~~~l~~~~r~~~--~~~~i~dl~~~~~ 172 (232)
T PRK06202 127 ------------------------GERFDVVTSNH----FLHH--LDDAE--VVRLLADSAALAR--RLVLHNDLIRSRL 172 (232)
T ss_pred ------------------------CCCccEEEECC----eeec--CChHH--HHHHHHHHHHhcC--eeEEEeccccCHH
Confidence 35799999821 1000 11111 2469999999887 6777777777653
No 336
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.81 E-value=0.00011 Score=82.14 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=80.0
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 623 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 623 (772)
.+||.++.|.|.++..+....+..+|+++|+||..++.+++...+..-+.++++.+|+.+++.. .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~-------------- 123 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-E-------------- 123 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-c--------------
Confidence 5799999999999988877766558999999999999999988443334577999999998754 2
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 624 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
.+||+|++|-+ |. | .+|+..+...++++|++.+-
T Consensus 124 ------------------~~fD~V~lDP~------Gs--~------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 124 ------------------RKFDVVDIDPF------GS--P------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------------------CCCCEEEECCC------CC--c------HHHHHHHHHHhcCCCEEEEE
Confidence 45999999754 11 2 67899988889999999975
No 337
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.81 E-value=0.00016 Score=82.83 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEE---
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVIL--- 140 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi--- 140 (772)
.++.+|||++||.|.-+.+++.. +-..|++.|+++.-++.++++..+.+ .++.+...|...+.....+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 58899999999999999998886 23469999999999999988776544 3678888898876423346799998
Q ss_pred -ecccccccccCcc----c-------hHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 141 -DKGGLDALMEPEL----G-------HKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 141 -~~~~l~~l~~~~~----~-------~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
|.+.-..-.+++. . ...-.++|..+.++|||||+++.+|.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 3322111111110 0 012478999999999999999998876
No 338
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.80 E-value=0.00017 Score=78.84 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=52.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHh
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVRE 607 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~ 607 (772)
+.+||.+|+|.|.++..|... ..+|++||+++.+++.|++......-++++++.+|+.++...
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~ 236 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA 236 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh
Confidence 478999999999999999884 368999999999999999886221124799999999988643
No 339
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.79 E-value=7.9e-05 Score=84.86 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=70.7
Q ss_pred CCeEEEEcccccHHHHHHHHhC----CCCcEEEEEcCHHHHHHHHHh---cCCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECM----PFVGIEAVELDLTMLNLAEDY---FGFTQDKSLKVHITDGIKFVREMKSSSATD 615 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~----p~~~i~~VEiDp~v~~vA~~~---Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~ 615 (772)
...|++||.|.|.|.++..+.. ...+|.+||.+|..+...++. -|+ +++++|+.+|..++ +.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w--~~~V~vi~~d~r~v--~l------- 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW--GDKVTVIHGDMREV--EL------- 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--TTTEEEEES-TTTS--CH-------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--CCeEEEEeCcccCC--CC-------
Confidence 4679999999999998887664 346999999999766555332 244 57899999998887 11
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
..++|+||.-.-.+- | -.+ +.++.|..+.+.|+|+|+++
T Consensus 256 -------------------------pekvDIIVSElLGsf---g----~nE-l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 -------------------------PEKVDIIVSELLGSF---G----DNE-LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -------------------------SS-EEEEEE---BTT---B----TTT-SHHHHHHHGGGGEEEEEEEE
T ss_pred -------------------------CCceeEEEEeccCCc---c----ccc-cCHHHHHHHHhhcCCCCEEe
Confidence 258999998664331 1 122 44788999999999999988
No 340
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.79 E-value=2.3e-05 Score=78.42 Aligned_cols=108 Identities=20% Similarity=0.250 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc------c-cc--CCCc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ------V-FM--DETF 136 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~------~-~~--~~sf 136 (772)
++.++||+||++|.++..+.+++ ...|+|+|+.+. ...+.+.++++|+++.. . +. .+.|
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence 45899999999999999999987 457999999884 12245667777776532 1 12 2689
Q ss_pred cEEEecccccccccCccc----hHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 137 DVILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 137 DvVi~~~~l~~l~~~~~~----~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
|+|++.+..+.......+ ..+....+.-+...|+|||.|++-.+..++.
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 999988855443321111 1235666667778899999999988876554
No 341
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.77 E-value=0.0003 Score=73.06 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=65.5
Q ss_pred CCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEe
Q 004133 64 PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 64 ~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
...++.+.|||+|.|||.++..|.+.|. +|+++++.+.|+.+..++..... ..++++++|+.+.+ + ..||.+|+
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-~--P~fd~cVs 129 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-L--PRFDGCVS 129 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-C--cccceeec
Confidence 3347899999999999999999999986 69999999999999988875443 47899999998876 3 47999997
Q ss_pred cccc
Q 004133 142 KGGL 145 (772)
Q Consensus 142 ~~~l 145 (772)
+-..
T Consensus 130 NlPy 133 (315)
T KOG0820|consen 130 NLPY 133 (315)
T ss_pred cCCc
Confidence 5543
No 342
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.77 E-value=0.00012 Score=77.21 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhcc-----CCCCcEEEEeeccCcccccCC-CccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSMQVFMDE-TFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~-----~~~~v~f~~~D~~~l~~~~~~-sfDvVi 140 (772)
...+||-+|-|.|..+..+.+.. ..+|+.||+++.+++.+++-+.. ..++++++..|....-.-..+ .||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999999998874 57899999999999999765431 346899999999874312234 899998
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
....-..... . .-....+++.+++.|+|||++++-.
T Consensus 156 ~D~~dp~~~~-~--~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPDGPA-P--NLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTTSCG-G--GGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCCCc-c--cccCHHHHHHHHhhcCCCcEEEEEc
Confidence 5332211000 0 0113689999999999999999865
No 343
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.77 E-value=0.00017 Score=82.28 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=78.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.+|+|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++.....
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~----------- 358 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW----------- 358 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh-----------
Confidence 34689999999999999988764 48999999999999999987432235799999999998765421
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
.+..||+|++|.-- .| +..++++.+.+ |++++++.+
T Consensus 359 ------------------~~~~~D~vi~dPPr----~G--------~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 359 ------------------AGQIPDVLLLDPPR----KG--------CAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred ------------------cCCCCCEEEECcCC----CC--------CCHHHHHHHHh-cCCCEEEEE
Confidence 12469999995321 12 34788887664 889887665
No 344
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.77 E-value=0.00012 Score=79.65 Aligned_cols=103 Identities=13% Similarity=0.102 Sum_probs=71.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH---HHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL---AEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v---A~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...+||.||+|+|.+...+....+. .|++||+++.++.. ++++.+ .+.++.+...|..+. .
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~l----p--------- 184 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQL----H--------- 184 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHC----C---------
Confidence 4579999999999988877776543 79999999999864 344443 346777777764332 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
....||+|++= ....-+..| ..+|+.+++.|+|||.|++...
T Consensus 185 ---------------------~~~~FD~V~s~----gvL~H~~dp------~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 185 ---------------------ELYAFDTVFSM----GVLYHRKSP------LEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred ---------------------CCCCcCEEEEc----chhhccCCH------HHHHHHHHHhcCCCCEEEEEEE
Confidence 01469999861 100111112 5799999999999999998743
No 345
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.77 E-value=0.00029 Score=77.53 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=78.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
...++|.+|+|+|+++..+... ..+++++|+|+.+++.|+..+ |+. .++++.+|+.+. .
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~---~i~~~~~D~~~l----~--------- 243 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIE---DFFVKRGDATKL----P--------- 243 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCC---CCeEEecchhcC----C---------
Confidence 4468999999999887665443 468999999999999999775 552 288999998653 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC---CCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD---FVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~---f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.....||+|+.|.--+.. .+. ... -+-..+|+.+++.|+|||.+++-+...
T Consensus 244 --------------------~~~~~~D~Iv~dPPyg~~-~~~---~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 244 --------------------LSSESVDAIATDPPYGRS-TTA---AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred --------------------cccCCCCEEEECCCCcCc-ccc---cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 012579999996421111 000 111 124789999999999999999877544
No 346
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.00027 Score=77.69 Aligned_cols=125 Identities=20% Similarity=0.225 Sum_probs=91.7
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCC------C---------------------------------
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF------H--------------------------------- 92 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~------~--------------------------------- 92 (772)
.+...+..+-+. .++..++|+=||+|++.++.+..+. .
T Consensus 178 tLAaAil~lagw---~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~ 254 (381)
T COG0116 178 TLAAAILLLAGW---KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL 254 (381)
T ss_pred HHHHHHHHHcCC---CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence 344444444444 4567999999999999988877641 1
Q ss_pred -eEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEecccccccccCc-cchHHHHHHHHHHHhc
Q 004133 93 -GITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPE-LGHKLGNQYLSEVKRL 168 (772)
Q Consensus 93 -~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~-~~~~~~~~~l~ei~rv 168 (772)
.++|+|+++.+|+.|+.++...+. .++|.++|+.+++ -+-+.+|+||++....-=...+ .-..++..+.+.+++.
T Consensus 255 ~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~-~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 255 PIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLK-EPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred ceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCC-CCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 278999999999999888765543 5999999999987 3338999999977654322211 1123577888888899
Q ss_pred cccCeEEEEEEc
Q 004133 169 LKSGGKFVCLTL 180 (772)
Q Consensus 169 LkpGG~~ii~~~ 180 (772)
++-.+++++++.
T Consensus 334 ~~~ws~~v~tt~ 345 (381)
T COG0116 334 LAGWSRYVFTTS 345 (381)
T ss_pred hcCCceEEEEcc
Confidence 998889888874
No 347
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.75 E-value=8.9e-05 Score=73.99 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=84.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeE-EEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK-VHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~-v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....+|.+|+|+|.--.|.-.. |..+||.+|-+|.|-++|.+-+.=.....+. ++++||.+. .+++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l-~~l~----------- 142 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENL-PQLA----------- 142 (252)
T ss_pred CccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcC-cccc-----------
Confidence 3456899999999876654332 6779999999999999999988433344455 889998774 2222
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeC--CCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDV--DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~--~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
+.+||+|+.-+ .|-. .| ...|++++++|+|||.+++-=. -....
T Consensus 143 --------------------d~s~DtVV~TlvLCSve------~~------~k~L~e~~rlLRpgG~iifiEH--va~~y 188 (252)
T KOG4300|consen 143 --------------------DGSYDTVVCTLVLCSVE------DP------VKQLNEVRRLLRPGGRIIFIEH--VAGEY 188 (252)
T ss_pred --------------------cCCeeeEEEEEEEeccC------CH------HHHHHHHHHhcCCCcEEEEEec--ccccc
Confidence 47899998533 2221 12 7899999999999999886322 22222
Q ss_pred HHHHHHHHHhccc
Q 004133 699 DMVISRMKMVFNH 711 (772)
Q Consensus 699 ~~v~~~l~~vF~~ 711 (772)
......+++++..
T Consensus 189 ~~~n~i~q~v~ep 201 (252)
T KOG4300|consen 189 GFWNRILQQVAEP 201 (252)
T ss_pred hHHHHHHHHHhch
Confidence 3334445566654
No 348
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.75 E-value=0.00015 Score=81.12 Aligned_cols=113 Identities=13% Similarity=0.109 Sum_probs=80.7
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~ 129 (772)
.+...+.+.+... .++.+|||++||+|..+..++.. +...|+++|+++.+++.++++...++ .++++.++|+..+.
T Consensus 43 dl~~~v~~~~~~~--~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l 120 (382)
T PRK04338 43 DISVLVLRAFGPK--LPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL 120 (382)
T ss_pred hHHHHHHHHHHhh--cCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH
Confidence 3444445554320 13468999999999999999775 55579999999999999987764433 35679999997753
Q ss_pred cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 130 VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 130 ~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
...+.||+|+.... -. -..++....+.+++||.+++.
T Consensus 121 -~~~~~fD~V~lDP~----Gs-------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 121 -HEERKFDVVDIDPF----GS-------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -hhcCCCCEEEECCC----CC-------cHHHHHHHHHHhcCCCEEEEE
Confidence 11467999876431 11 246778877888999988877
No 349
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.75 E-value=8.4e-05 Score=79.92 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=67.6
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC--CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g--~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~ 129 (772)
.+...+...+.. .++..+||.+||+|..+..+++.. ...|+|+|.++.|++.+++++.. ..+++++++|+.++.
T Consensus 6 Vll~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 6 VLLDEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLK 81 (296)
T ss_pred ccHHHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHH
Confidence 444455556553 578899999999999999999873 35799999999999999888755 567999999999865
Q ss_pred cccCC---CccEEEecc
Q 004133 130 VFMDE---TFDVILDKG 143 (772)
Q Consensus 130 ~~~~~---sfDvVi~~~ 143 (772)
..... ++|.|+...
T Consensus 82 ~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 82 EVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHcCCCccCEEEECC
Confidence 22222 789777533
No 350
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.75 E-value=9.6e-05 Score=76.28 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=72.4
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
....+||.||+|.|.++..+... ..+|++||++|.+++.|++.+... ..+++.++++|..+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------------- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------------- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------------
Confidence 35678999999999999998875 358999999999999999987432 224789999986543
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
..+||+|+. ++... .|+.. -..+++.+.+.+++++++.+
T Consensus 117 ---------------------~~~fD~ii~~~~l~~-------~~~~~--~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 ---------------------CGEFDIVVCMDVLIH-------YPASD--MAKALGHLASLTKERVIFTF 156 (219)
T ss_pred ---------------------CCCcCEEEEhhHHHh-------CCHHH--HHHHHHHHHHHhCCCEEEEE
Confidence 145999986 22111 01222 25578888888887666654
No 351
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.75 E-value=3.8e-05 Score=77.91 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC---CCcEEEEeeccCcc-cccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQ-VFMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~---~~v~f~~~D~~~l~-~~~~~sfDvVi~~ 142 (772)
+.+.+|||.+.|-|..+...+++|...|+-++-++.+++.|.-+--+.. ..++.+.+|+.+.- .|+|++||+|+-.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 4589999999999999999999998789999999999987743221111 25799999998742 4889999999842
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
..=..+.. + --..++.+|++|+|||||+++-.+
T Consensus 213 PPRfS~Ag-e---LYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 213 PPRFSLAG-E---LYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred CCccchhh-h---HhHHHHHHHHHHHcCcCCcEEEEe
Confidence 22111111 0 014688999999999999998654
No 352
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.74 E-value=0.00014 Score=73.87 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcccccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.++..|||+.||-|.++..++.. ....|+++|++|.+++.++++...+. ..+...++|+.++. +.+.||.|++..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~--~~~~~drvim~l 177 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL--PEGKFDRVIMNL 177 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE--
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--CccccCEEEECC
Confidence 46899999999999999999984 34579999999999999987765443 35889999999987 378999988754
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
.-.. ..++..+.+++++||.+-
T Consensus 178 p~~~-----------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 PESS-----------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TSSG-----------GGGHHHHHHHEEEEEEEE
T ss_pred hHHH-----------HHHHHHHHHHhcCCcEEE
Confidence 3222 358888999999998763
No 353
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00022 Score=76.33 Aligned_cols=106 Identities=20% Similarity=0.240 Sum_probs=80.6
Q ss_pred CeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccC-----CCCcEEEEeeccCcccccCCCccEEEecc
Q 004133 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSMQVFMDETFDVILDKG 143 (772)
Q Consensus 70 ~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~-----~~~v~f~~~D~~~l~~~~~~sfDvVi~~~ 143 (772)
.+||.+|-|.|..+.++.+.. ..+++.||+.+.+|+.+++.+... .++++.+..|..+.-.-..++||+|+...
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999999984 578999999999999998776432 36889999999875312234899999644
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+=. . .+. ..-.-..+++.+++.|+++|+++.-
T Consensus 158 tdp-~-gp~-~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-V-GPA-EALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-C-Ccc-cccCCHHHHHHHHHhcCCCcEEEEe
Confidence 322 1 110 0001368999999999999999987
No 354
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.70 E-value=0.00026 Score=79.22 Aligned_cols=101 Identities=8% Similarity=0.073 Sum_probs=76.2
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
..+||.+|+|.|.++..+... ..+|++||+|+..++.|++......-++++++.+|..+++....
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~------------- 298 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQM------------- 298 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcC-------------
Confidence 368999999999998888754 36899999999999999988733222479999999999875422
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
..||+|++|- |..=+..++++.+.. ++|++++.+-.
T Consensus 299 -------------------~~~D~vi~DP------------Pr~G~~~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 299 -------------------SAPELVLVNP------------PRRGIGKELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred -------------------CCCCEEEECC------------CCCCCcHHHHHHHHh-cCCCeEEEEEe
Confidence 3499999962 222234777777754 78998887643
No 355
>PRK00536 speE spermidine synthase; Provisional
Probab=97.68 E-value=0.00047 Score=72.95 Aligned_cols=96 Identities=13% Similarity=0.236 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhc-----cCCCCcEEEEeeccCcccccCCCccEEEe
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQVFMDETFDVILD 141 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~-----~~~~~v~f~~~D~~~l~~~~~~sfDvVi~ 141 (772)
..+.+||-+|.|.|..+.++.+..- +|+.|||.+.+++.+++-+. -..|+++++.. +. . -..++||+||.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~-~~~~~fDVIIv 145 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--D-LDIKKYDLIIC 145 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--h-ccCCcCCEEEE
Confidence 3568999999999999999999864 79999999999998876331 23456776642 11 1 12468999996
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
-.+ .+ ..+++.++|.|+|||.++.-+
T Consensus 146 Ds~----~~--------~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 146 LQE----PD--------IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCC----CC--------hHHHHHHHHhcCCCcEEEECC
Confidence 543 22 367899999999999999853
No 356
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.68 E-value=0.0004 Score=72.22 Aligned_cols=124 Identities=16% Similarity=0.242 Sum_probs=83.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC-CCCCCCeEEEEc----cHHHHHHhhcccCcccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHIT----DGIKFVREMKSSSATDE 616 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-~~~~~rl~v~i~----Dg~~~l~~~~~~~~~~~ 616 (772)
++..+|.+|+|+|+++.++.+.+|..+|++||.+++.+.+|.+... +.-..++.|+.- |...- .
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~---~-------- 216 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE---H-------- 216 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc---c--------
Confidence 3447999999999999999999999999999999999999998861 223567777743 22111 0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeC--------CCCCCCCCCCcCCcCCC--------cHHHHHHHHHcc
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV--------DSPDSSSGMTCPAADFV--------EGSFLLTVKDAL 680 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~--------~~~d~~~g~s~Pp~~f~--------~~~fl~~~~~~L 680 (772)
.....++|+|+..- -.-+++.+..-|+.++. -..++..+.+.|
T Consensus 217 ---------------------~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L 275 (328)
T KOG2904|consen 217 ---------------------PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML 275 (328)
T ss_pred ---------------------ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc
Confidence 01136788887521 00112223333333332 245778888999
Q ss_pred CCCcEEEEEecCC--ChhH
Q 004133 681 SEQGLFIVNLVSR--SQAT 697 (772)
Q Consensus 681 ~~~Gilv~Nl~~~--~~~~ 697 (772)
.|||.+.+++..+ ++..
T Consensus 276 q~gg~~~le~~~~~~~~~l 294 (328)
T KOG2904|consen 276 QPGGFEQLELVERKEHSYL 294 (328)
T ss_pred ccCCeEEEEecccccCcHH
Confidence 9999999999844 4444
No 357
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.64 E-value=0.00028 Score=76.89 Aligned_cols=82 Identities=15% Similarity=0.089 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC-CC--CcEEEE-eeccCcc-c--ccCCCccEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RS--DMRWRV-MDMTSMQ-V--FMDETFDVI 139 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~-~~--~v~f~~-~D~~~l~-~--~~~~sfDvV 139 (772)
++.++||||||+|.+...++.. ...+++|+|+++.+++.|+++.... .. .+++.. .|..++. . .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4689999999999888777665 2247999999999999998877554 22 466643 3443322 0 246789999
Q ss_pred Eecccccccc
Q 004133 140 LDKGGLDALM 149 (772)
Q Consensus 140 i~~~~l~~l~ 149 (772)
+++--++.-.
T Consensus 194 vcNPPf~~s~ 203 (321)
T PRK11727 194 LCNPPFHASA 203 (321)
T ss_pred EeCCCCcCcc
Confidence 9998877543
No 358
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.64 E-value=0.00033 Score=80.24 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=76.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+||.+|+|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++.....
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~----------- 363 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW----------- 363 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh-----------
Confidence 34689999999999999998875 58999999999999999887322224699999999988744220
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEe
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 690 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 690 (772)
....||+|++|. + ..|+ .+.++.+.+ |++++++.+-.
T Consensus 364 ------------------~~~~fD~Vi~dP--P--r~g~---------~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 364 ------------------ALGGFDKVLLDP--P--RAGA---------AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred ------------------hcCCCCEEEECc--C--CcCh---------HHHHHHHHh-cCCCeEEEEEe
Confidence 124699999953 1 1122 456666655 68899877654
No 359
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00038 Score=69.94 Aligned_cols=127 Identities=17% Similarity=0.243 Sum_probs=96.9
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.+..|||-||.|.|....|+++.-|. +=..+|..|.|++--|++ |-.+-+++.+..|-=.+.+.++.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~-gw~ek~nViil~g~WeDvl~~L~----------- 166 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDW-GWREKENVIILEGRWEDVLNTLP----------- 166 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhc-ccccccceEEEecchHhhhcccc-----------
Confidence 46689999999999999999999776 677899999999998887 55566777777775555666654
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE-EEecCCChhHHH
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI-VNLVSRSQATKD 699 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv-~Nl~~~~~~~~~ 699 (772)
++.||=|+.|.++.-+.. ..+|.+.+-++|+|+|+|. +|..+-+..+..
T Consensus 167 --------------------d~~FDGI~yDTy~e~yEd----------l~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~ 216 (271)
T KOG1709|consen 167 --------------------DKHFDGIYYDTYSELYED----------LRHFHQHVVRLLKPEGVFSYFNGLGADNLMFY 216 (271)
T ss_pred --------------------ccCcceeEeechhhHHHH----------HHHHHHHHhhhcCCCceEEEecCcccchhhhh
Confidence 466999999998763211 3778999999999999998 688777665433
Q ss_pred HHHHHHHHhccceEEEee
Q 004133 700 MVISRMKMVFNHLFCLQL 717 (772)
Q Consensus 700 ~v~~~l~~vF~~v~~~~~ 717 (772)
. ++..+..+++
T Consensus 217 ~-------vy~~lV~iev 227 (271)
T KOG1709|consen 217 D-------VYKILVMIEV 227 (271)
T ss_pred h-------hhheeEEEEe
Confidence 2 4555555544
No 360
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.64 E-value=0.00044 Score=75.34 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=50.8
Q ss_pred cCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC--CCCCeEEEE-ccHHHH
Q 004133 540 VGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHI-TDGIKF 604 (772)
Q Consensus 540 ~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~--~~~rl~v~i-~Dg~~~ 604 (772)
.+...++|.||+|+|++...|....+..+++++||||..++.|++..... -..+++++. .|.-.+
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i 179 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAI 179 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhh
Confidence 35678999999999977777777777889999999999999999988543 245788865 344333
No 361
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.62 E-value=3.7e-05 Score=69.81 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=48.4
Q ss_pred EEEcccccHHHHHHHHhCCCC---cEEEEEcCH---HHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 547 VVIGLGAGLLPMFLHECMPFV---GIEAVELDL---TMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 547 LviGlG~G~l~~~L~~~~p~~---~i~~VEiDp---~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
|.||...|..+.++...++.. ++.+||.++ ..-++.++ .++ .++++++.+|..+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~--~~~~~~~~g~s~~~l~~~~----------- 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGL--SDRVEFIQGDSPDFLPSLP----------- 66 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHH-----------
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCC--CCeEEEEEcCcHHHHHHcC-----------
Confidence 468888887777777665543 699999999 45555544 343 4679999999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..++|+|++|.+.... .....|+.+..+|+|||++++.
T Consensus 67 --------------------~~~~dli~iDg~H~~~-----------~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 67 --------------------DGPIDLIFIDGDHSYE-----------AVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --------------------H--EEEEEEES---HH-----------HHHHHHHHHGGGEEEEEEEEEE
T ss_pred --------------------CCCEEEEEECCCCCHH-----------HHHHHHHHHHHHcCCCeEEEEe
Confidence 2679999999864321 2366788999999999999975
No 362
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.62 E-value=0.00011 Score=75.23 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=73.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+-++.+|+|.|-.+..++.++ -+|.++|++++|+++|++++... .+-..+..-+|+++++.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g--------------- 96 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG--------------- 96 (261)
T ss_pred cceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC---------------
Confidence 3478999999998888999986 47999999999999999999643 11122333333333321
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC-CCcHHHHHHHHHccCCCc-EEEEEecC
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-FVEGSFLLTVKDALSEQG-LFIVNLVS 692 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~-f~~~~fl~~~~~~L~~~G-ilv~Nl~~ 692 (772)
...+.|+|++ .+ ..+ |--++|++.+++.|+++| ++++....
T Consensus 97 ------------------~e~SVDlI~~----Aq--------a~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 97 ------------------GEESVDLITA----AQ--------AVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ------------------CCcceeeehh----hh--------hHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 1367999986 21 122 335889999999997755 88887765
No 363
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.62 E-value=0.00037 Score=71.28 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=63.5
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhc----------cCCCCcEEEEeeccCcccccC--
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV----------RDRSDMRWRVMDMTSMQVFMD-- 133 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~----------~~~~~v~f~~~D~~~l~~~~~-- 133 (772)
.+++.++|||||.|......+-. ++...+||++.+...+.|..... ....++++..+|+.+.+ +..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~-~~~~~ 119 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD-FVKDI 119 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH-HHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH-hHhhh
Confidence 67899999999999998776654 88789999999988876653211 11236788889988754 221
Q ss_pred -CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 134 -ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 134 -~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
..-|+|+++.+.. +++ +...|.++..-||+|-++|..
T Consensus 120 ~s~AdvVf~Nn~~F---~~~-----l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 WSDADVVFVNNTCF---DPD-----LNLALAELLLELKPGARIIST 157 (205)
T ss_dssp GHC-SEEEE--TTT----HH-----HHHHHHHHHTTS-TT-EEEES
T ss_pred hcCCCEEEEecccc---CHH-----HHHHHHHHHhcCCCCCEEEEC
Confidence 3469999988653 212 556678888899999887754
No 364
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.61 E-value=0.00025 Score=71.30 Aligned_cols=110 Identities=16% Similarity=0.246 Sum_probs=78.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC-CCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...++|.+=.|+|++..-..... ..+|+.||.|+..+.+.++... +...++.+++.+|+..++.....
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------- 110 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------- 110 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH----------
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc----------
Confidence 35789999999999987554442 3499999999999999998872 22245799999999999987631
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC--cHHHHHHHH--HccCCCcEEEEEecCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV--EGSFLLTVK--DALSEQGLFIVNLVSR 693 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~--~~~fl~~~~--~~L~~~Gilv~Nl~~~ 693 (772)
...+||+|++|- |-..- -.+.++.+. ..|+++|++++-...+
T Consensus 111 -------------------~~~~fDiIflDP------------PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 111 -------------------KGEKFDIIFLDP------------PYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -------------------CTS-EEEEEE--------------STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred -------------------cCCCceEEEECC------------CcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 147899999952 33222 266777776 7889999999877554
No 365
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.61 E-value=0.00034 Score=77.93 Aligned_cols=101 Identities=14% Similarity=0.197 Sum_probs=82.4
Q ss_pred CCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
+.+||.+..|.|....-.....++ .+|+++|++|..++.+++...+..-+.++++.+|+..++....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~------------ 112 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRN------------ 112 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhC------------
Confidence 368999999999888877666433 4899999999999999998855433468999999999987643
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
.+||+|++|-+.. | ..|+..+.+.++++|++.+-
T Consensus 113 --------------------~~fDvIdlDPfGs--------~------~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 113 --------------------RKFHVIDIDPFGT--------P------APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --------------------CCCCEEEeCCCCC--------c------HHHHHHHHHhcccCCEEEEE
Confidence 5699999976432 2 57999999999999999975
No 366
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00033 Score=73.66 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=69.6
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFM 132 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~ 132 (772)
+...+...... .+++.|||||+|.|.++..|++++. .|+++++++.+++..+++.. ...+++.+.+|+.+.+ ++
T Consensus 18 v~~kIv~~a~~---~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d-~~ 91 (259)
T COG0030 18 VIDKIVEAANI---SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFD-FP 91 (259)
T ss_pred HHHHHHHhcCC---CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCc-ch
Confidence 34445555544 5689999999999999999999976 59999999999999987764 4568999999999988 66
Q ss_pred CC-CccEEEecccc
Q 004133 133 DE-TFDVILDKGGL 145 (772)
Q Consensus 133 ~~-sfDvVi~~~~l 145 (772)
.- .++.|+++--.
T Consensus 92 ~l~~~~~vVaNlPY 105 (259)
T COG0030 92 SLAQPYKVVANLPY 105 (259)
T ss_pred hhcCCCEEEEcCCC
Confidence 53 67888875543
No 367
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.59 E-value=0.00022 Score=75.78 Aligned_cols=147 Identities=14% Similarity=0.214 Sum_probs=77.2
Q ss_pred CCCeEEEEccccc-HHHHHHH-HhCCCCcEEEEEcCHHHHHHHHHhcC--CCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAG-LLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYFG--FTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G-~l~~~L~-~~~p~~~i~~VEiDp~v~~vA~~~Fg--~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
.|.+|+.||.|.= ..+.+|+ .+.+...|+.+|+||+.++.|++-.+ +.-+.+++++.+|+.+.-.+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--------- 190 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--------- 190 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---------
Confidence 5679999999854 4444444 45677899999999999999987654 112789999999987653222
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhH
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 697 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 697 (772)
..||+|++-+--+ |..- --.+.|+.+.+.++||.++++=-...-..+
T Consensus 191 ------------------------~~~DvV~lAalVg-----~~~e----~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~ 237 (276)
T PF03059_consen 191 ------------------------KEYDVVFLAALVG-----MDAE----PKEEILEHLAKHMAPGARLVVRSAHGLRSF 237 (276)
T ss_dssp ---------------------------SEEEE-TT-S-------------SHHHHHHHHHHHS-TTSEEEEEE--GGGGG
T ss_pred ------------------------ccCCEEEEhhhcc-----cccc----hHHHHHHHHHhhCCCCcEEEEecchhhHHH
Confidence 4699999954333 2111 237899999999999999997532222222
Q ss_pred HHHHHH--HHHHhccceEEEeecC-CceEEEEEecCC
Q 004133 698 KDMVIS--RMKMVFNHLFCLQLEE-DVNLVLFGLSSE 731 (772)
Q Consensus 698 ~~~v~~--~l~~vF~~v~~~~~~~-~~N~vl~a~~~~ 731 (772)
....++ .++ -|..+..++..+ =+|.|+|+.+..
T Consensus 238 LYp~vd~~~l~-gf~~~~~~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 238 LYPVVDPEDLR-GFEVLAVVHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp SS----TGGGT-TEEEEEEE---TT---EEEEE----
T ss_pred cCCCCChHHCC-CeEEEEEECCCCCceeEEEEEEecc
Confidence 221121 122 566555555444 479999998754
No 368
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.56 E-value=0.00023 Score=71.76 Aligned_cols=129 Identities=15% Similarity=0.131 Sum_probs=81.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
++.++|.||+|.|--+.||+... ..|++||+++.-++.+++.-.- ++-.++....|--++ .
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~-~~l~i~~~~~Dl~~~----~------------ 90 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEE-EGLDIRTRVADLNDF----D------------ 90 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHH-TT-TEEEEE-BGCCB----S------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhh-cCceeEEEEecchhc----c------------
Confidence 56899999999999999999984 5899999999988877665421 112378888874332 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC-------
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS------- 694 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~------- 694 (772)
-...||+|+..+-- +-.+++.+ +..++.+++.++|||++++......
T Consensus 91 ------------------~~~~yD~I~st~v~------~fL~~~~~--~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~ 144 (192)
T PF03848_consen 91 ------------------FPEEYDFIVSTVVF------MFLQRELR--PQIIENMKAATKPGGYNLIVTFMETPDYPCPS 144 (192)
T ss_dssp -------------------TTTEEEEEEESSG------GGS-GGGH--HHHHHHHHHTEEEEEEEEEEEEB--SSS--SS
T ss_pred ------------------ccCCcCEEEEEEEe------ccCCHHHH--HHHHHHHHhhcCCcEEEEEEEecccCCCCCCC
Confidence 12579999864311 22233333 7789999999999999888653221
Q ss_pred -hhHHHHHHHHHHHhccceEEEe
Q 004133 695 -QATKDMVISRMKMVFNHLFCLQ 716 (772)
Q Consensus 695 -~~~~~~v~~~l~~vF~~v~~~~ 716 (772)
.++.- --..|+..|...-.+.
T Consensus 145 ~~~f~~-~~~EL~~~y~dW~il~ 166 (192)
T PF03848_consen 145 PFPFLL-KPGELREYYADWEILK 166 (192)
T ss_dssp --S--B--TTHHHHHTTTSEEEE
T ss_pred CCCccc-CHHHHHHHhCCCeEEE
Confidence 11111 1256777887644333
No 369
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.0012 Score=65.92 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=94.1
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccCcc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ 129 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~l~ 129 (772)
.++..+..++... .-.+.++||+-+|+|.++.+.+.+|...++.||.+..++...+++...-. .++.++.+|+...-
T Consensus 28 rVREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 28 RVREALFNILAPD-EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred HHHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 3344444444320 02679999999999999999999999899999999999999988775544 57889999998531
Q ss_pred -ccc-CCCccEEEecccccccccCccchHHHHHHHHH--HHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcC
Q 004133 130 -VFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSE--VKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIP 205 (772)
Q Consensus 130 -~~~-~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~e--i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~ 205 (772)
... .+.||+|+..-.+..=.-+ ....+.. -..+|+|+|.++|-.-....+ .....+|.+.-+..+
T Consensus 107 ~~~~~~~~FDlVflDPPy~~~l~~------~~~~~~~~~~~~~L~~~~~iv~E~~~~~~~-----~~~~~~~~~~r~k~y 175 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAKGLLD------KELALLLLEENGWLKPGALIVVEHDKDVEL-----PELPANFELHREKKY 175 (187)
T ss_pred HhcCCCCcccEEEeCCCCccchhh------HHHHHHHHHhcCCcCCCcEEEEEeCCCcCc-----cccCCCeEEEEEeec
Confidence 011 2259999976555411100 1223333 457899999999886543211 122335666555544
Q ss_pred C
Q 004133 206 Q 206 (772)
Q Consensus 206 ~ 206 (772)
+
T Consensus 176 G 176 (187)
T COG0742 176 G 176 (187)
T ss_pred C
Confidence 4
No 370
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.54 E-value=0.0011 Score=67.74 Aligned_cols=138 Identities=14% Similarity=0.099 Sum_probs=93.6
Q ss_pred EEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCC--CCcEEEEeeccC-cccccCCCccEEEecccccc
Q 004133 72 ILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS-MQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 72 ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~--~~v~f~~~D~~~-l~~~~~~sfDvVi~~~~l~~ 147 (772)
|.|+||-.|.++.+|.+.|. ..++++|+++.-++.|++.....+ ..+++..+|-.+ ++ +.+..|.|+..|+=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~--~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK--PGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG----GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC--CCCCCCEEEEecCCHH
Confidence 68999999999999999975 469999999999999998876554 368999999654 43 3344799988886655
Q ss_pred cccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCCCCCCCCCcceEEEEEEecCC
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 226 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~l~~f~~~~~K~~~ 226 (772)
+ +..+|+.....++....|++.........+.++.. .+|.+.-..+-.. ....|-+..+.+...
T Consensus 79 l---------I~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~--~gf~I~~E~lv~e----~~~~YeIi~~~~~~~ 142 (205)
T PF04816_consen 79 L---------IIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYE--NGFEIIDEDLVEE----NGRFYEIIVAERGEE 142 (205)
T ss_dssp H---------HHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHH--TTEEEEEEEEEEE----TTEEEEEEEEEESSS
T ss_pred H---------HHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHH--CCCEEEEeEEEeE----CCEEEEEEEEEeCCC
Confidence 4 66889988888887778888877766655544333 3788887776532 224445555555443
No 371
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.52 E-value=0.001 Score=70.72 Aligned_cols=125 Identities=14% Similarity=0.221 Sum_probs=87.5
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~ 129 (772)
...+...+.+.++. .++..|||+|+|.|.++..|.+.+ .+++++|+++.+++..+++.. ..++++++.+|+.++.
T Consensus 15 ~~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 15 DPNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSC
T ss_pred CHHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-hcccceeeecchhccc
Confidence 34666777777765 578999999999999999999998 689999999999999988764 5678999999999987
Q ss_pred cccC---CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccc
Q 004133 130 VFMD---ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 191 (772)
Q Consensus 130 ~~~~---~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~ 191 (772)
..+ .....|+++-.. ++ ...++..+...-+ -|+.-++.+.|..+.+.+..
T Consensus 90 -~~~~~~~~~~~vv~NlPy-~i---------s~~il~~ll~~~~-~g~~~~~l~vq~e~a~rl~a 142 (262)
T PF00398_consen 90 -LYDLLKNQPLLVVGNLPY-NI---------SSPILRKLLELYR-FGRVRMVLMVQKEVAERLLA 142 (262)
T ss_dssp -GGGHCSSSEEEEEEEETG-TG---------HHHHHHHHHHHGG-GCEEEEEEEEEHHHHHHHHT
T ss_pred -cHHhhcCCceEEEEEecc-cc---------hHHHHHHHhhccc-ccccceEEEEehhhhhhccC
Confidence 443 344566665433 22 2345555555333 34444444445555555544
No 372
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.52 E-value=0.00078 Score=71.59 Aligned_cols=130 Identities=18% Similarity=0.276 Sum_probs=76.9
Q ss_pred ccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhH-HHHHHc-CC-CeEEEEeCCHHHHHHHHHHhcc---CCC
Q 004133 43 SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLS-EHLYDA-GF-HGITNVDFSKVVISDMLRRNVR---DRS 116 (772)
Q Consensus 43 ~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls-~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~---~~~ 116 (772)
.|.+|..|..+...=...+.......+.+|+=||||.=-++ ..|++. +. ..|+|+|+++.+++.+++.... -..
T Consensus 95 ~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~ 174 (276)
T PF03059_consen 95 SFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK 174 (276)
T ss_dssp TSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S
T ss_pred cCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC
Confidence 35567777766655444554421123459999999987777 444443 32 3699999999999999776541 245
Q ss_pred CcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 117 DMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 117 ~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+++|+++|..+.+ ..-..||+|+.......-..+ ..++|..+.+.++||.++++-+
T Consensus 175 ~m~f~~~d~~~~~-~dl~~~DvV~lAalVg~~~e~------K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 175 RMSFITADVLDVT-YDLKEYDVVFLAALVGMDAEP------KEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp SEEEEES-GGGG--GG----SEEEE-TT-S----S------HHHHHHHHHHHS-TTSEEEEEE
T ss_pred CeEEEecchhccc-cccccCCEEEEhhhcccccch------HHHHHHHHHhhCCCCcEEEEec
Confidence 7999999998876 555789999865544322222 5799999999999999988874
No 373
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.52 E-value=0.00063 Score=75.53 Aligned_cols=134 Identities=14% Similarity=0.213 Sum_probs=79.0
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCccc
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQV 130 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~ 130 (772)
.+...+.++++. .++ +|||+-||.|.++..|++.. .+|+|||+++.+++.|++++..++ .+++|.++++.++..
T Consensus 184 ~l~~~~~~~l~~---~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~ 258 (352)
T PF05958_consen 184 KLYEQALEWLDL---SKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAK 258 (352)
T ss_dssp HHHHHHHHHCTT----TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCC
T ss_pred HHHHHHHHHhhc---CCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhH
Confidence 334445556653 334 89999999999999998874 579999999999999988876544 479999988765420
Q ss_pred ---------------ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccC
Q 004133 131 ---------------FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF 195 (772)
Q Consensus 131 ---------------~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~ 195 (772)
.....+|+|+.. +|..+. -..+++.+.+ + .+++.++.....+.+.+-. +..
T Consensus 259 ~~~~~r~~~~~~~~~~~~~~~d~vilD-------PPR~G~--~~~~~~~~~~---~-~~ivYvSCnP~tlaRDl~~-L~~ 324 (352)
T PF05958_consen 259 ALAKAREFNRLKGIDLKSFKFDAVILD-------PPRAGL--DEKVIELIKK---L-KRIVYVSCNPATLARDLKI-LKE 324 (352)
T ss_dssp HHCCS-GGTTGGGS-GGCTTESEEEE----------TT-S--CHHHHHHHHH---S-SEEEEEES-HHHHHHHHHH-HHC
T ss_pred HHHhhHHHHhhhhhhhhhcCCCEEEEc-------CCCCCc--hHHHHHHHhc---C-CeEEEEECCHHHHHHHHHH-Hhh
Confidence 112357877531 221111 1234444433 2 4788888776666554432 223
Q ss_pred CcEEEEEEc
Q 004133 196 GWKMSVHAI 204 (772)
Q Consensus 196 ~w~~~~~~~ 204 (772)
+|.+.....
T Consensus 325 ~y~~~~v~~ 333 (352)
T PF05958_consen 325 GYKLEKVQP 333 (352)
T ss_dssp CEEEEEEEE
T ss_pred cCEEEEEEE
Confidence 666554443
No 374
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.51 E-value=6.9e-05 Score=75.83 Aligned_cols=103 Identities=18% Similarity=0.342 Sum_probs=80.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
+.-.++|.||+|+|...--|+.+. .++++|||+..|++.|.+.=.+ + ++.++|+..|++...
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~Y---D--~L~~Aea~~Fl~~~~----------- 185 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLY---D--TLYVAEAVLFLEDLT----------- 185 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccch---H--HHHHHHHHHHhhhcc-----------
Confidence 446789999999999988888875 4799999999999999887655 2 567789999988654
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
+.+||+|.. ||.. +.+.+ +.++-.+...|+|||+|++.+-.
T Consensus 186 --------------------~er~DLi~AaDVl~--YlG~L---------e~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 186 --------------------QERFDLIVAADVLP--YLGAL---------EGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred --------------------CCcccchhhhhHHH--hhcch---------hhHHHHHHHhcCCCceEEEEecc
Confidence 478999964 3321 11222 67888999999999999998743
No 375
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.47 E-value=0.0013 Score=71.13 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=51.7
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~ 604 (772)
...+||.||.|.|.++..|.... .+|++||+|+.+++.+++.+... ..++++++.+|+.++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 44689999999999999998864 47999999999999999988432 246899999999875
No 376
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.46 E-value=0.00087 Score=73.08 Aligned_cols=59 Identities=20% Similarity=0.088 Sum_probs=47.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-----CCCCeEEEEccHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----QDKSLKVHITDGI 602 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-----~~~rl~v~i~Dg~ 602 (772)
...+||.||+|+|.++..|... +.+|++||+++.|++.|++.+... ...+++++.+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3569999999999999888876 358999999999999999886321 1346788888853
No 377
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.45 E-value=0.00044 Score=69.16 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=52.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
+...|||.||+|.|.|..+|.+. .+++..+||+|++-+..|.+. | +.|+.+|.-+-|....
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-G------v~Viq~Dld~gL~~f~ 72 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-G------VSVIQGDLDEGLADFP 72 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-C------CCEEECCHHHhHhhCC
Confidence 34589999999999999999997 578999999999988888665 3 5899999988877755
No 378
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.44 E-value=0.00045 Score=74.74 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=84.4
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDAL 148 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l 148 (772)
-...+|+|.|.|+.+..+.. -|.+|-++++....+..+...+. +.++.+-+|+.+-. | +-|+|+.+++|+++
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~~--P--~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQDT--P--KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc---CCcceecccccccC--C--CcCeEEEEeecccC
Confidence 47899999999999999988 57679999999988887755552 55899999998753 3 34699999999999
Q ss_pred ccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 149 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 149 ~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
.+.+ ..++|++++..|+|||.+++....
T Consensus 250 tDed-----cvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 250 TDED-----CVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred ChHH-----HHHHHHHHHHhCCCCCEEEEEecc
Confidence 8765 899999999999999999998763
No 379
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.44 E-value=0.001 Score=74.20 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=53.4
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhh
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREM 608 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~ 608 (772)
.++|.+++|.|+++..|.... .+|++||+++.+++.|++......-++++++.+|+.++++..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~ 270 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAM 270 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence 469999999999999888875 389999999999999999873322247999999999998764
No 380
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.44 E-value=0.0011 Score=72.56 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCCCccEEEeccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDETFDVILDKGG 144 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~sfDvVi~~~~ 144 (772)
.++..|||+-||-|.++..++..|...|+++|++|.+++.++++...++. .+..+++|+.... ..-+.||-|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~-~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA-PELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh-hccccCCEEEeCCC
Confidence 35899999999999999999999876699999999999999887754432 4889999999987 44488999997654
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
-. ...++..+.+.+++||++-+..+.++..
T Consensus 266 ~~-----------a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 KS-----------AHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred Cc-----------chhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 32 2478888899999999999998887654
No 381
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.42 E-value=0.00091 Score=68.25 Aligned_cols=140 Identities=20% Similarity=0.222 Sum_probs=96.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCH----HHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDL----TMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 615 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp----~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~ 615 (772)
....+||-+|...|+..+++..... ...|.+||..| .++.+|++.- ++--+++||..--+-..
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~------NIiPIl~DAr~P~~Y~~------ 139 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP------NIIPILEDARHPEKYRM------ 139 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST------TEEEEES-TTSGGGGTT------
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC------ceeeeeccCCChHHhhc------
Confidence 3457999999999999999999875 66999999999 7788888764 46778999975322211
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC--
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR-- 693 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~-- 693 (772)
--..+|+|+.|+..++. .+-+..+++..|++||.+++-+-++
T Consensus 140 ------------------------lv~~VDvI~~DVaQp~Q------------a~I~~~Na~~fLk~gG~~~i~iKa~si 183 (229)
T PF01269_consen 140 ------------------------LVEMVDVIFQDVAQPDQ------------ARIAALNARHFLKPGGHLIISIKARSI 183 (229)
T ss_dssp ------------------------TS--EEEEEEE-SSTTH------------HHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred ------------------------ccccccEEEecCCChHH------------HHHHHHHHHhhccCCcEEEEEEecCcc
Confidence 12579999999976652 2678889999999999888765332
Q ss_pred -----ChhHHHHHHHHHHHh-ccceEEEee--cCCceEEEEEe
Q 004133 694 -----SQATKDMVISRMKMV-FNHLFCLQL--EEDVNLVLFGL 728 (772)
Q Consensus 694 -----~~~~~~~v~~~l~~v-F~~v~~~~~--~~~~N~vl~a~ 728 (772)
..+.+...+++|++. |.-+-.+.+ -+..+.+++|.
T Consensus 184 D~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 184 DSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp -SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEE
Confidence 234556678888874 764444444 34455666654
No 382
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.41 E-value=0.0007 Score=66.45 Aligned_cols=130 Identities=20% Similarity=0.343 Sum_probs=82.2
Q ss_pred CCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
...+||.+|+|-|.+..-|++. |+. .+++||.++..+++|+.-- |+ ++.+++.+.|..+= +
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~--~n~I~f~q~DI~~~--~---------- 131 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGF--SNEIRFQQLDITDP--D---------- 131 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCC--CcceeEEEeeccCC--c----------
Confidence 3449999999999887766654 333 6999999999999997544 44 34488888886542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEE----EeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILI----IDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Ii----vD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
....+||+|+ .|+-+--+.. |...+ .-++..+.+.|+|+|+|++--.
T Consensus 132 ---------------------~~~~qfdlvlDKGT~DAisLs~d~----~~~r~--~~Y~d~v~~ll~~~gifvItSC-- 182 (227)
T KOG1271|consen 132 ---------------------FLSGQFDLVLDKGTLDAISLSPDG----PVGRL--VVYLDSVEKLLSPGGIFVITSC-- 182 (227)
T ss_pred ---------------------ccccceeEEeecCceeeeecCCCC----cccce--eeehhhHhhccCCCcEEEEEec--
Confidence 1136688876 2322111000 11111 4578889999999999998542
Q ss_pred ChhHHHHHHHHHHHh-ccceEEEe
Q 004133 694 SQATKDMVISRMKMV-FNHLFCLQ 716 (772)
Q Consensus 694 ~~~~~~~v~~~l~~v-F~~v~~~~ 716 (772)
.-..+++++.+..- |..++.++
T Consensus 183 -N~T~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 183 -NFTKDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred -CccHHHHHHHHhcCCeEEEEeec
Confidence 23345556665544 54444443
No 383
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.41 E-value=0.0012 Score=73.40 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=53.4
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHh
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVRE 607 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~ 607 (772)
.++|.+|+|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQA 260 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence 469999999999999999886 38999999999999999988443334699999999999865
No 384
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.41 E-value=0.002 Score=65.83 Aligned_cols=124 Identities=19% Similarity=0.276 Sum_probs=86.5
Q ss_pred cccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe
Q 004133 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (772)
Q Consensus 46 W~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g-~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~ 123 (772)
|......+...+..-++....+++.+||-+|..+|....++.+. | -..|++|++|+...+.....+ +.++|+--+..
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la-~~R~NIiPIl~ 129 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLA-KKRPNIIPILE 129 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH-HHSTTEEEEES
T ss_pred cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHh-ccCCceeeeec
Confidence 76666788887877666444578999999999999999999886 4 346999999998887775444 56789999999
Q ss_pred eccCccc--ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 124 DMTSMQV--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 124 D~~~l~~--~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
|+..... ..-+..|+|+..-. . +...+-+..++...||+||.+++..
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVa----Q-----p~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVA----Q-----PDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-S----S-----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCChHHhhcccccccEEEecCC----C-----hHHHHHHHHHHHhhccCCcEEEEEE
Confidence 9987541 22357888875321 1 1226778888899999999998764
No 385
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.40 E-value=0.00058 Score=76.11 Aligned_cols=100 Identities=8% Similarity=0.049 Sum_probs=78.0
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccccCCCccEEEecccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
+.+|||+.||+|..+..++.. |...|+++|+++.+++.++++...... ++++.+.|+..+-......||+|.... +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999987 677899999999999999887754433 578999999876412236799987533 2
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
-. -..+++.+.+.+++||.+++..
T Consensus 124 ---Gs-------~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GT-------PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CC-------cHHHHHHHHHhcccCCEEEEEe
Confidence 11 1368999999999999887763
No 386
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.39 E-value=0.00033 Score=71.32 Aligned_cols=106 Identities=25% Similarity=0.345 Sum_probs=67.8
Q ss_pred CCCCeEEEEcccccHHHHH-HHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHH-HHHHhhcccCcccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMF-LHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI-KFVREMKSSSATDEMS 618 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~-L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~-~~l~~~~~~~~~~~~~ 618 (772)
....++|..|.|.|-.+.- |...+ -+|+.||..+..++.|+++++- ..+++.-+..=|+ +|..+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~-~~~~v~~~~~~gLQ~f~P~----------- 119 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGK-DNPRVGEFYCVGLQDFTPE----------- 119 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCC-GGCCEEEEEES-GGG---------------
T ss_pred CCcceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcc-cCCCcceEEecCHhhccCC-----------
Confidence 4567899999999988764 44443 5899999999999999999975 2344444433333 34211
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc---HHHHHHHHHccCCCcEEEE--EecCC
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIV--NLVSR 693 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~---~~fl~~~~~~L~~~Gilv~--Nl~~~ 693 (772)
..+||+|.+=-- -.+|.+ .+||+.|+..|+|+|++++ |+...
T Consensus 120 ----------------------~~~YDlIW~QW~-----------lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~ 166 (218)
T PF05891_consen 120 ----------------------EGKYDLIWIQWC-----------LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS 166 (218)
T ss_dssp ----------------------TT-EEEEEEES------------GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred ----------------------CCcEeEEEehHh-----------hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC
Confidence 368999998221 123333 4689999999999999997 66543
No 387
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.37 E-value=0.0009 Score=69.23 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=47.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEcc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITD 600 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~D 600 (772)
...+||.||+|.|.++..|.... .+++++|+++.+++.|++.+.-. ..+++.++.+|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 45689999999999998888764 46999999999999999987432 22578999998
No 388
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.0011 Score=65.73 Aligned_cols=92 Identities=20% Similarity=0.272 Sum_probs=68.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.+.|+.+|+|+|.|..-..-..+. +|.+||+||+.+++|++.-+- ...++++.++|..+|
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~------------------ 105 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF------------------ 105 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc------------------
Confidence 356999999999987766655444 999999999999999988742 345799999998887
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHcc
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDAL 680 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L 680 (772)
..++|.+|.+ .+ -|.. -.+ -+..||+.+.+.-
T Consensus 106 ------------------~~~~dtvimN--PP---FG~~--~rh-aDr~Fl~~Ale~s 137 (198)
T COG2263 106 ------------------RGKFDTVIMN--PP---FGSQ--RRH-ADRPFLLKALEIS 137 (198)
T ss_pred ------------------CCccceEEEC--CC---Cccc--ccc-CCHHHHHHHHHhh
Confidence 3668888872 22 1221 222 6789999888765
No 389
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0014 Score=74.37 Aligned_cols=123 Identities=14% Similarity=0.172 Sum_probs=82.2
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcccc
Q 004133 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQVF 131 (772)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~~ 131 (772)
+.....+++.. .++.++||+=||.|.++..|++.. .+|+|+|+++.+++.|++++..++. +++|..+|+.+...-
T Consensus 281 l~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 281 LYETALEWLEL---AGGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHhh---cCCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 33444555554 567899999999999999999764 4799999999999999888765543 699999999987511
Q ss_pred --cCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhccc
Q 004133 132 --MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLF 190 (772)
Q Consensus 132 --~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~ 190 (772)
....+|.|+..- |..+. -..+++.+.+. +|-. ++.++.....+.+.+.
T Consensus 357 ~~~~~~~d~VvvDP-------PR~G~--~~~~lk~l~~~-~p~~-IvYVSCNP~TlaRDl~ 406 (432)
T COG2265 357 WWEGYKPDVVVVDP-------PRAGA--DREVLKQLAKL-KPKR-IVYVSCNPATLARDLA 406 (432)
T ss_pred ccccCCCCEEEECC-------CCCCC--CHHHHHHHHhc-CCCc-EEEEeCCHHHHHHHHH
Confidence 235789887522 11110 12455555554 3433 4445555555555433
No 390
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.32 E-value=0.0015 Score=70.00 Aligned_cols=126 Identities=14% Similarity=0.071 Sum_probs=80.1
Q ss_pred hhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCCCcE---EEEee
Q 004133 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMR---WRVMD 124 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~---f~~~D 124 (772)
|..+...+.++-.......+.+|||+|||+|.-+....+. ...+++++|.|+.|++.++..... .+... +....
T Consensus 15 YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~-~~~~~~~~~~~~~ 93 (274)
T PF09243_consen 15 YAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA-GPNNRNAEWRRVL 93 (274)
T ss_pred HHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc-ccccccchhhhhh
Confidence 3344444444332221235679999999999877655543 456799999999999988766532 22211 11111
Q ss_pred ccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhh
Q 004133 125 MTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 185 (772)
Q Consensus 125 ~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~ 185 (772)
..+.. +....|+|++.++|.-+.+ + .+..+++.+-+.+.+ .++++.-+.+.-
T Consensus 94 ~~~~~--~~~~~DLvi~s~~L~EL~~-~----~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 94 YRDFL--PFPPDDLVIASYVLNELPS-A----ARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred hcccc--cCCCCcEEEEehhhhcCCc-h----HHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 11111 2223499999999998876 2 267888888777765 888998877643
No 391
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0005 Score=72.27 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=53.0
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...|+.||-|.|+|+..|.+.. .+|++||||+.++.+-++.+. ..++++|+.+|++++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~ 88 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKF 88 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcC
Confidence 5789999999999999999986 369999999999999999997 357899999999987
No 392
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.0013 Score=67.48 Aligned_cols=98 Identities=16% Similarity=0.091 Sum_probs=73.7
Q ss_pred CCeEEEEcCCCchhHHHHHH-cCCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCC-ccEEEecccc
Q 004133 69 PPQILVPGCGNSRLSEHLYD-AGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDET-FDVILDKGGL 145 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~-~g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~s-fDvVi~~~~l 145 (772)
+.+++|||.|.|--+..|+= ..-.+||-+|....=+...+.....-+ ++++++++-++++. .+.. ||+|.+..+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~--~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG--QEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc--cccccCcEEEeehcc
Confidence 58999999999999888773 233459999998877766655443333 46999999999986 3233 9999986543
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
. +..+++-+...+|+||.++..-
T Consensus 146 ~-----------L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 146 S-----------LNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred c-----------hHHHHHHHHHhcccCCcchhhh
Confidence 2 5678889999999999986543
No 393
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.28 E-value=0.0017 Score=76.09 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=62.4
Q ss_pred hhhHHHHHHHhhcCC-C---CCCCCeEEEEcCCCchhHHHHHHcC--------C-CeEEEEeCCHHHHHHHHHHhccCC-
Q 004133 50 WPQLRDPLISLIGAP-T---SSPPPQILVPGCGNSRLSEHLYDAG--------F-HGITNVDFSKVVISDMLRRNVRDR- 115 (772)
Q Consensus 50 ~~~l~~~l~~~l~~~-~---~~~~~~ILDlGCG~G~ls~~La~~g--------~-~~V~gvDiS~~~I~~a~~~~~~~~- 115 (772)
...+...+...+... . .....+|||+|||+|.+...+++.. . .+++|+|+++.++..++.++....
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~ 88 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL 88 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC
Confidence 345555555554220 0 0134699999999999998877641 1 468999999999998877654332
Q ss_pred CCcEEEEeeccCcc----cccCCCccEEEeccccccc
Q 004133 116 SDMRWRVMDMTSMQ----VFMDETFDVILDKGGLDAL 148 (772)
Q Consensus 116 ~~v~f~~~D~~~l~----~~~~~sfDvVi~~~~l~~l 148 (772)
......+.|..... .-..+.||+|+.+-..--+
T Consensus 89 ~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 89 LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred CCceeeecccccccccccccccCcccEEEeCCCcccc
Confidence 23455555543211 0112579999987766543
No 394
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.27 E-value=0.0023 Score=61.53 Aligned_cols=98 Identities=14% Similarity=0.206 Sum_probs=69.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHH-----cCCCeEEEEeCCHHHHHHHHHHhccCC----CCcEEEEeeccCcccccCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYD-----AGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQVFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~-----~g~~~V~gvDiS~~~I~~a~~~~~~~~----~~v~f~~~D~~~l~~~~~~sfD 137 (772)
.+...|+|+|||.|.++..|+. ....+|++||.++..++.+.++..... .++++..+++.+.. .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES--SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc--ccCCCe
Confidence 4678999999999999999988 433479999999999999987765433 35677777766543 356778
Q ss_pred EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
+++.-++-.-+. ..+++...+ ++-.++++
T Consensus 102 ~~vgLHaCG~Ls---------~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVGLHACGDLS---------DRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEEeecccchH---------HHHHHHHHH---cCCCEEEE
Confidence 888766655553 345555555 55555443
No 395
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.27 E-value=0.0016 Score=78.39 Aligned_cols=108 Identities=18% Similarity=0.214 Sum_probs=76.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-------CC-----CCcEEEEEcCHH---HHHH-----------HHH----hc----
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-------MP-----FVGIEAVELDLT---MLNL-----------AED----YF---- 586 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-------~p-----~~~i~~VEiDp~---v~~v-----------A~~----~F---- 586 (772)
....+|+.+|.|+|.-...+... -| .+++..||.+|. -+.- ++. |-
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 44588999999999433222221 23 358999998762 1111 111 10
Q ss_pred CCC----CC--CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC
Q 004133 587 GFT----QD--KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 660 (772)
Q Consensus 587 g~~----~~--~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~ 660 (772)
|+. ++ =++++++||+.+.+.+.. .++|+|++|.|++..
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~--------------------------------~~~d~~~lD~FsP~~---- 179 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLD--------------------------------ARADAWFLDGFAPAK---- 179 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhcc--------------------------------ccccEEEeCCCCCcc----
Confidence 210 12 267799999999998864 469999999999853
Q ss_pred CcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 661 TCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 661 s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
.+++.+.++|..++++++|+|+|+
T Consensus 180 ---np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 180 ---NPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ---ChhhccHHHHHHHHHHhCCCCEEE
Confidence 688999999999999999999999
No 396
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.26 E-value=0.0031 Score=61.27 Aligned_cols=111 Identities=11% Similarity=0.146 Sum_probs=81.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
.....||.+|-|+|.++..+..+ .+...++++|.+++-+..-.+.|. ..+++.||+...=...+
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~~~ii~gda~~l~~~l~---------- 111 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----GVNIINGDAFDLRTTLG---------- 111 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----CccccccchhhHHHHHh----------
Confidence 44568999999999988866554 466799999999999999888873 35699999987533333
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
+..+..||.||.-+ +...+ | -=.+.+.|+.+..+|..||.++.=..+
T Consensus 112 ------------------e~~gq~~D~viS~l----Pll~~--P--~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 112 ------------------EHKGQFFDSVISGL----PLLNF--P--MHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ------------------hcCCCeeeeEEecc----ccccC--c--HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 22368899999733 11101 1 113678999999999999999966655
No 397
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=97.24 E-value=0.0021 Score=60.37 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=64.0
Q ss_pred CCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcH
Q 004133 591 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 670 (772)
Q Consensus 591 ~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~ 670 (772)
.-++++++||+.+.|++.. ..+|+|+.|.+++.. .+++.+.
T Consensus 30 ~v~L~L~~gDa~~~l~~l~--------------------------------~~~Da~ylDgFsP~~-------nPelWs~ 70 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLD--------------------------------ARFDAWYLDGFSPAK-------NPELWSE 70 (124)
T ss_dssp TEEEEEEES-HHHHHHHB---------------------------------T-EEEEEE-SS-TTT-------SGGGSSH
T ss_pred CEEEEEEEcHHHHHHHhCc--------------------------------ccCCEEEecCCCCcC-------CcccCCH
Confidence 3578999999999999975 679999999999853 6789999
Q ss_pred HHHHHHHHccCCCcEEEEEecCCChhHHHHHHHHHHHhccceEEEeecCCceEEEEEec
Q 004133 671 SFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLS 729 (772)
Q Consensus 671 ~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~vl~a~~ 729 (772)
++|+.+.++++++|+++- .+.... |-..|.++==+|...+-...-.+++.|..
T Consensus 71 e~~~~l~~~~~~~~~l~T--ys~a~~----Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLAT--YSSAGA----VRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHHHHHEEEEEEEEE--S--BHH----HHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred HHHHHHHHHhCCCcEEEE--eechHH----HHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 999999999999999883 333333 34445555334665554344556666653
No 398
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.24 E-value=0.0041 Score=66.91 Aligned_cols=161 Identities=13% Similarity=0.118 Sum_probs=117.3
Q ss_pred CccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhc---CC
Q 004133 513 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GF 588 (772)
Q Consensus 513 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~F---g~ 588 (772)
+++..+=..+|+.+..|.. ....+||.+..|-|+=+..+...++ ...|+++|+++.=+...+.++ |.
T Consensus 65 G~~~vQd~sS~l~~~~L~~---------~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~ 135 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALDP---------QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV 135 (283)
T ss_dssp TSEEEHHHHHHHHHHHHTT---------TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CcEEecccccccccccccc---------cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC
Confidence 4444444455665554432 3446799999999987778888876 569999999999988887765 54
Q ss_pred CCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc---
Q 004133 589 TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA--- 665 (772)
Q Consensus 589 ~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~--- 665 (772)
..+.++..|+..+..... ...||.|++|+-.+.. +-+.-.|.
T Consensus 136 ---~~v~~~~~D~~~~~~~~~-------------------------------~~~fd~VlvDaPCSg~-G~i~r~p~~~~ 180 (283)
T PF01189_consen 136 ---FNVIVINADARKLDPKKP-------------------------------ESKFDRVLVDAPCSGL-GTIRRNPDIKW 180 (283)
T ss_dssp ---SSEEEEESHHHHHHHHHH-------------------------------TTTEEEEEEECSCCCG-GGTTTCTTHHH
T ss_pred ---ceEEEEeecccccccccc-------------------------------ccccchhhcCCCccch-hhhhhccchhh
Confidence 568888899999976654 2469999999955521 11222222
Q ss_pred ----------CCCcHHHHHHHHHcc----CCCcEEEEEecCCChhHHHHHHHHHHHhccceEEEee
Q 004133 666 ----------DFVEGSFLLTVKDAL----SEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQL 717 (772)
Q Consensus 666 ----------~f~~~~fl~~~~~~L----~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~ 717 (772)
..+..+.|+.+.+.| +|||.+|.-..+-.++..+.+++.+-+.++.....++
T Consensus 181 ~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~~ 246 (283)
T PF01189_consen 181 RRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVPI 246 (283)
T ss_dssp HE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEECC
T ss_pred cccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 134778999999999 9999999998877888888899988888877655543
No 399
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.004 Score=61.34 Aligned_cols=123 Identities=20% Similarity=0.322 Sum_probs=87.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
.+.=++.||+|+|....||.... |+....+.||+|...++.++---. +..++.+++.|-..-|+.
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-n~~~~~~V~tdl~~~l~~------------- 108 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-NRVHIDVVRTDLLSGLRN------------- 108 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-cCCccceeehhHHhhhcc-------------
Confidence 35668999999999999999876 566788999999999986655432 345688999987666554
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC-----------------CCcHHHHHHHHHccCCC
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD-----------------FVEGSFLLTVKDALSEQ 683 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~-----------------f~~~~fl~~~~~~L~~~ 683 (772)
.+.|++++. .+ + +..++.. =+...+|..+..+|+|.
T Consensus 109 ---------------------~~VDvLvfN--PP-Y---Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~ 161 (209)
T KOG3191|consen 109 ---------------------ESVDVLVFN--PP-Y---VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPR 161 (209)
T ss_pred ---------------------CCccEEEEC--CC-c---CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcC
Confidence 458888862 11 1 0011111 13577888999999999
Q ss_pred cEEEEEecCCChhHHHHHHHHHHH
Q 004133 684 GLFIVNLVSRSQATKDMVISRMKM 707 (772)
Q Consensus 684 Gilv~Nl~~~~~~~~~~v~~~l~~ 707 (772)
|+|-++...++.. ++++..++.
T Consensus 162 Gv~Ylv~~~~N~p--~ei~k~l~~ 183 (209)
T KOG3191|consen 162 GVFYLVALRANKP--KEILKILEK 183 (209)
T ss_pred ceEEeeehhhcCH--HHHHHHHhh
Confidence 9999998776654 345555543
No 400
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0051 Score=68.36 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=104.6
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATD 615 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~ 615 (772)
....+||.+..+-|+=+..|.+..++ ..|+++|+|+.=++..+... |+ .++.++..|+..+.....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~nv~~~~~d~~~~~~~~~------ 225 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---RNVIVVNKDARRLAELLP------ 225 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---CceEEEeccccccccccc------
Confidence 34578999999988777788888765 35699999998888887765 65 348899999987754432
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCC-cCCcC-------------CCcHHHHHHHHHccC
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMT-CPAAD-------------FVEGSFLLTVKDALS 681 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s-~Pp~~-------------f~~~~fl~~~~~~L~ 681 (772)
...+||.|++|+-.+. .|+- --|.. =+..++|..+.+.|+
T Consensus 226 ------------------------~~~~fD~iLlDaPCSg--~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk 279 (355)
T COG0144 226 ------------------------GGEKFDRILLDAPCSG--TGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK 279 (355)
T ss_pred ------------------------ccCcCcEEEECCCCCC--CcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1236999999995542 2322 11221 247789999999999
Q ss_pred CCcEEEEEecCCChhHHHHHHHHHHHhccceEEE
Q 004133 682 EQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCL 715 (772)
Q Consensus 682 ~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~ 715 (772)
|||.||.-..+..++..+.++..+-+-.+.+-..
T Consensus 280 ~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~ 313 (355)
T COG0144 280 PGGVLVYSTCSLTPEENEEVVERFLERHPDFELE 313 (355)
T ss_pred CCCEEEEEccCCchhcCHHHHHHHHHhCCCceee
Confidence 9999999999999998899998887776654433
No 401
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.14 E-value=0.00091 Score=71.59 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=51.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...+||.||+|.|.++..|....+ +|++||+|+.+++.+++.+. +++++++.+|+.++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~ 99 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKV 99 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcC
Confidence 446899999999999999999864 89999999999999999774 26899999999875
No 402
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.14 E-value=0.0014 Score=66.35 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=44.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...+||.||+|.|.+...+.... ...+++||+++.+++.|++. +++++.+|..+.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~ 67 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEG 67 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhc
Confidence 34689999999999988887664 45789999999999998752 467888887654
No 403
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.13 E-value=0.0023 Score=64.31 Aligned_cols=96 Identities=19% Similarity=0.119 Sum_probs=74.2
Q ss_pred eEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcccccCCCccEEEeccccccc
Q 004133 71 QILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQVFMDETFDVILDKGGLDAL 148 (772)
Q Consensus 71 ~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l 148 (772)
+++|+|+|.|--+..|+=. +..+++.+|....=+...+.....-+ .++++++..+++ . ....+||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~-~~~~~fd~v~aRAv~~-- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P-EYRESFDVVTARAVAP-- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T-TTTT-EEEEEEESSSS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c-ccCCCccEEEeehhcC--
Confidence 8999999999988777654 44579999999987766654443322 469999999999 3 4678999999876543
Q ss_pred ccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 149 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 149 ~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
...+++-+...|++||++++.-
T Consensus 127 ---------l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 ---------LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ---------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ---------HHHHHHHHHHhcCCCCEEEEEc
Confidence 5688999999999999998874
No 404
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0021 Score=64.60 Aligned_cols=101 Identities=15% Similarity=0.220 Sum_probs=75.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHHhcCCC----------CCCCeEEEEccHHHHHHhhc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYFGFT----------QDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiDp~v~~vA~~~Fg~~----------~~~rl~v~i~Dg~~~l~~~~ 609 (772)
...+.|.||.|+|.|+.....+... ...++||.=|++++.+++..... +..++.+++|||+.--.+
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-- 159 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-- 159 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc--
Confidence 4578999999999998877765533 34499999999999999876221 347899999999875222
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 610 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+||.|.+-+..+ +..+.+.+.|+++|-+++-
T Consensus 160 -------------------------------~a~YDaIhvGAaa~----------------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 -------------------------------QAPYDAIHVGAAAS----------------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred -------------------------------cCCcceEEEccCcc----------------ccHHHHHHhhccCCeEEEe
Confidence 46799999965433 3356667779999888876
Q ss_pred ec
Q 004133 690 LV 691 (772)
Q Consensus 690 l~ 691 (772)
+.
T Consensus 193 ~~ 194 (237)
T KOG1661|consen 193 VG 194 (237)
T ss_pred ec
Confidence 64
No 405
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.11 E-value=0.0052 Score=60.70 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe-eccCcc-------cccCCCc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-DMTSMQ-------VFMDETF 136 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~-D~~~l~-------~~~~~sf 136 (772)
.|+++|||+||..|.++.-..++ +..-|.|||+-. ......+.++++ |+++.. ..++...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----------ccCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 57899999999999999877765 234599999854 122335666666 888743 3677889
Q ss_pred cEEEecccccccc----cCccchHHHHHHHHHHHhccccCeEEEEEEcCchh
Q 004133 137 DVILDKGGLDALM----EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 184 (772)
Q Consensus 137 DvVi~~~~l~~l~----~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~ 184 (772)
|+|++...-.+-- +......+...++.-....++|+|.|+|-.|....
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 9999744322111 10001122445556666788999999999987653
No 406
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.10 E-value=0.00092 Score=66.83 Aligned_cols=143 Identities=19% Similarity=0.204 Sum_probs=87.5
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccH-----HHHHHhhcccCcc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG-----IKFVREMKSSSAT 614 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg-----~~~l~~~~~~~~~ 614 (772)
+...+||.||.+-|+.+.++.+.. +..+|.+||+-+. .+.+.+..+.+|. .+.+.+..
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~----- 85 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLL----- 85 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSH-----
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhc-----
Confidence 466899999999999999999987 5669999999988 1113344444443 22332221
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC---cCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 615 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA---ADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp---~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
.....++|+|+.|+-..- .|..... ..-+....+..+...|++||.||+-+.
T Consensus 86 -----------------------~~~~~~~dlv~~D~~~~~--~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 86 -----------------------PESGEKFDLVLSDMAPNV--SGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp -----------------------GTTTCSESEEEE---------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred -----------------------cccccCcceeccccccCC--CCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 011368999999983221 1110000 001223344566677999999999887
Q ss_pred CCChhHHHHHHHHHHHhccceEEEeecC---CceEEEE
Q 004133 692 SRSQATKDMVISRMKMVFNHLFCLQLEE---DVNLVLF 726 (772)
Q Consensus 692 ~~~~~~~~~v~~~l~~vF~~v~~~~~~~---~~N~vl~ 726 (772)
..... . .++..++..|..+..++... ..|+.++
T Consensus 141 ~~~~~-~-~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Yl 176 (181)
T PF01728_consen 141 KGPEI-E-ELIYLLKRCFSKVKIVKPPSSRSESSEEYL 176 (181)
T ss_dssp SSTTS-H-HHHHHHHHHHHHEEEEE-TTSBTTCBEEEE
T ss_pred cCccH-H-HHHHHHHhCCeEEEEEECcCCCCCccEEEE
Confidence 64444 3 78999999999999988643 3455444
No 407
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0041 Score=62.26 Aligned_cols=125 Identities=19% Similarity=0.237 Sum_probs=94.4
Q ss_pred cccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEE
Q 004133 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (772)
Q Consensus 44 ~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~ 122 (772)
-+|......+...+..=++....+++.+||=+|..+|+...++.+. |-..+++|++|+.+.......+ ..++|+--+.
T Consensus 52 R~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a-~~R~Ni~PIL 130 (231)
T COG1889 52 REWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA-EKRPNIIPIL 130 (231)
T ss_pred eeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH-HhCCCceeee
Confidence 3487777788887777666545578999999999999999999887 5456999999999988886665 4577898899
Q ss_pred eeccCccc--ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 123 MDMTSMQV--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 123 ~D~~~l~~--~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
.|+..... +--+..|+|+..- . .+...+-+..++...||+||..++.
T Consensus 131 ~DA~~P~~Y~~~Ve~VDviy~DV----A-----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 131 EDARKPEKYRHLVEKVDVIYQDV----A-----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cccCCcHHhhhhcccccEEEEec----C-----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 99987541 2235678877421 1 2223677888999999999977664
No 408
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.09 E-value=0.003 Score=62.05 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=57.4
Q ss_pred EEEEcCHHHHHHHHHhcCCC---CCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeE
Q 004133 570 EAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDI 646 (772)
Q Consensus 570 ~~VEiDp~v~~vA~~~Fg~~---~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~ 646 (772)
++||+++.|+++|++..... ..++++++++|+.+. . ..+..||+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l----p-----------------------------~~~~~fD~ 47 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL----P-----------------------------FDDCEFDA 47 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC----C-----------------------------CCCCCeeE
Confidence 47999999999998765321 135799999998764 1 11367999
Q ss_pred EEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC
Q 004133 647 LIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 694 (772)
Q Consensus 647 IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 694 (772)
|++-.-- ..+. --..+|+.+++.|+|||.|++--++..
T Consensus 48 v~~~~~l----~~~~------d~~~~l~ei~rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 48 VTMGYGL----RNVV------DRLRAMKEMYRVLKPGSRVSILDFNKS 85 (160)
T ss_pred EEecchh----hcCC------CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 9973210 1111 127899999999999999987655543
No 409
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.06 E-value=0.0024 Score=66.17 Aligned_cols=135 Identities=8% Similarity=0.066 Sum_probs=87.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC------------CCCCeEEEEccHHHHHHhhc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~------------~~~rl~v~i~Dg~~~l~~~~ 609 (772)
...+|||.|+|-|--..||+.+. .+|++||++|.-++.+.+..++. ...+++++++|..++=...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~- 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA- 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-
Confidence 34799999999999999999873 58999999999999987644332 2457899999887751100
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 610 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
....+||+|.- . . .-..+ |+ =.-..+.+.+.++|+|||.+++-
T Consensus 120 -----------------------------~~~~~fD~VyD-r--a-~~~Al---pp-~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 120 -----------------------------NNLPVFDIWYD-R--G-AYIAL---PN-DLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred -----------------------------cccCCcCeeee-e--h-hHhcC---CH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence 01246898753 1 1 11112 22 24578999999999999977654
Q ss_pred ecCCCh----hHHHHHHHHHHHhccceEEEe
Q 004133 690 LVSRSQ----ATKDMVISRMKMVFNHLFCLQ 716 (772)
Q Consensus 690 l~~~~~----~~~~~v~~~l~~vF~~v~~~~ 716 (772)
....+. ..+.--...+++.|...+.+.
T Consensus 163 ~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~ 193 (226)
T PRK13256 163 VMEHDKKSQTPPYSVTQAELIKNFSAKIKFE 193 (226)
T ss_pred EEecCCCCCCCCCcCCHHHHHHhccCCceEE
Confidence 433221 111111356677776554443
No 410
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.06 E-value=0.00014 Score=72.36 Aligned_cols=95 Identities=19% Similarity=0.354 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
.+.++||+|+|+|..+..++.. +.+|++.+.|..|+.+.+++. |-+....+.. -.+-+||+|.+-..||-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~--------ynVl~~~ew~-~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKN--------YNVLTEIEWL-QTDVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcC--------Cceeeehhhh-hcCceeehHHHHHHHHh
Confidence 3579999999999999988775 567999999998888775443 2222222222 23446999999999987
Q ss_pred cccCccchHHHHHHHHHHHhcccc-CeEEEEEE
Q 004133 148 LMEPELGHKLGNQYLSEVKRLLKS-GGKFVCLT 179 (772)
Q Consensus 148 l~~~~~~~~~~~~~l~ei~rvLkp-GG~~ii~~ 179 (772)
..++ -++|+.|+.+|+| +|+.|+.-
T Consensus 182 c~~p-------~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 182 CFDP-------FKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred hcCh-------HHHHHHHHHHhccCCCcEEEEE
Confidence 7664 4899999999999 88887654
No 411
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.06 E-value=0.0029 Score=65.47 Aligned_cols=134 Identities=14% Similarity=0.145 Sum_probs=84.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC------------CCCCCeEEEEccHHHHHHhh
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF------------TQDKSLKVHITDGIKFVREM 608 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~------------~~~~rl~v~i~Dg~~~l~~~ 608 (772)
..+.+|||.|+|-|.-..+|+... .+|++||++|..++.|.+.-+. ..+.++++.++|-.++=...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 445689999999999999999873 5999999999999998554332 13467899999987751111
Q ss_pred cccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE-
Q 004133 609 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI- 687 (772)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv- 687 (772)
..+||+|.= .. .-..+ |+ =.-..+.+.++++|+|+|.+.
T Consensus 114 --------------------------------~g~fD~iyD---r~-~l~Al---pp-~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 114 --------------------------------VGKFDLIYD---RT-FLCAL---PP-EMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp --------------------------------HHSEEEEEE---CS-STTTS----G-GGHHHHHHHHHHCEEEEEEEEE
T ss_pred --------------------------------cCCceEEEE---ec-ccccC---CH-HHHHHHHHHHHHHhCCCCcEEE
Confidence 247999972 11 11222 23 356889999999999999833
Q ss_pred EEec-C---CChhHHHHHHHHHHHhccceEEEe
Q 004133 688 VNLV-S---RSQATKDMVISRMKMVFNHLFCLQ 716 (772)
Q Consensus 688 ~Nl~-~---~~~~~~~~v~~~l~~vF~~v~~~~ 716 (772)
+-+. . .....+.--.+.+.+.|..-+.+.
T Consensus 154 i~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~ 186 (218)
T PF05724_consen 154 ITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIE 186 (218)
T ss_dssp EEEES-CSCSSSSS----HHHHHHHHTTTEEEE
T ss_pred EEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEE
Confidence 2222 1 111122222456666676544443
No 412
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.06 E-value=0.004 Score=67.15 Aligned_cols=65 Identities=12% Similarity=-0.019 Sum_probs=55.9
Q ss_pred CCeEEEEcccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
...++..++|+|.-+..+.+.+| ..+|.++|.||.+++.|++.+. +.+|++++.+|..++.....
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~--~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK--PFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc--cCCcEEEEeCCHHHHHHHHH
Confidence 35799999999999999998886 6799999999999999998763 24689999999999876654
No 413
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.05 E-value=0.0056 Score=61.22 Aligned_cols=109 Identities=16% Similarity=0.223 Sum_probs=78.6
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcC-CCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg-~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
...++|.+=.|+|+|..-..... -.+++.||.|.....+.+++.. +....+.+++..|+..+++....
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~---------- 111 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT---------- 111 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC----------
Confidence 45789999999999987655543 3499999999999999999973 32368899999999999888651
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc-HHHHHH--HHHccCCCcEEEEEec
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-GSFLLT--VKDALSEQGLFIVNLV 691 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~-~~fl~~--~~~~L~~~Gilv~Nl~ 691 (772)
...||+|++|- +- ...++. ..-+.. -...|+|+|++++-.-
T Consensus 112 --------------------~~~FDlVflDP--Py--------~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 112 --------------------REPFDLVFLDP--PY--------AKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred --------------------CCcccEEEeCC--CC--------ccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 13599999953 11 122442 222222 2356999999998653
No 414
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.96 E-value=0.013 Score=56.00 Aligned_cols=125 Identities=12% Similarity=0.140 Sum_probs=77.2
Q ss_pred eEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccCC-CccEEEecccccccccCccc----hHHHHHHHHHH
Q 004133 93 GITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMDE-TFDVILDKGGLDALMEPELG----HKLGNQYLSEV 165 (772)
Q Consensus 93 ~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~~-sfDvVi~~~~l~~l~~~~~~----~~~~~~~l~ei 165 (772)
+|++.||-+.+|+..++++..... +++++..+=.++..+-+. ++|+|+- -|.|++..+.. +..-..+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iF--NLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIF--NLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEE--EESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEE--ECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 489999999999999999876543 688888877776633344 8998764 35566553311 22366889999
Q ss_pred HhccccCeEEEEEEcC-chhh------hhccccccc-CCcEEEEEEcCCCCCCCCCcceEEEEEEe
Q 004133 166 KRLLKSGGKFVCLTLA-ESHV------LGLLFPKFR-FGWKMSVHAIPQKSSSEPSLQTFMVVADK 223 (772)
Q Consensus 166 ~rvLkpGG~~ii~~~~-~~~~------~~~l~~~~~-~~w~~~~~~~~~~~~~~~~l~~f~~~~~K 223 (772)
.++|+|||++.++.|. .+.- ...++.... ..|.+..+...+. ..-|++++.++|
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~----~~~pp~l~~ieK 140 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQ----KNNPPLLVIIEK 140 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-----SS---EEEEEEE
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCC----CCCCCEEEEEEC
Confidence 9999999999998876 3321 123344443 3788877776553 335777777765
No 415
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.96 E-value=0.0023 Score=65.05 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=68.7
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccc---cCCCccEEEecccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVF---MDETFDVILDKGGL 145 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~---~~~sfDvVi~~~~l 145 (772)
..++|||||=+...... ..++-+|+.||+.+ . .-.+.+.|+.+.| . +++.||+|....+|
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns------------~--~~~I~qqDFm~rp-lp~~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNS------------Q--HPGILQQDFMERP-LPKNESEKFDVISLSLVL 114 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCC------------C--CCCceeeccccCC-CCCCcccceeEEEEEEEE
Confidence 47999999976554432 23444699999976 0 1235677777766 4 47899999999999
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeE-----EEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGK-----FVCLT 179 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~-----~ii~~ 179 (772)
.+++++.. +-.|+..+++.|+|+|. ++++.
T Consensus 115 NfVP~p~~----RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 115 NFVPDPKQ----RGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred eeCCCHHH----HHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 99987553 88999999999999999 76664
No 416
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0053 Score=61.89 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC-cccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-MQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~-l~~~~~~sfDvVi~~~~l 145 (772)
..+.+||++|-|-|.....+.......=+.|+..+.++++|+...-....++....+-..+ ++.++++.||-|+-...-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 3689999999999999988877765556889999999999987765555677777775554 223678999988743222
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
.+..+ ...+.+.+.|+|||+|+|-..
T Consensus 180 e~yEd-------l~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 180 ELYED-------LRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hHHHH-------HHHHHHHHhhhcCCCceEEEe
Confidence 22222 678889999999999998544
No 417
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.91 E-value=0.0019 Score=68.61 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=51.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...+||.||.|.|.++..|.+.. .+|++||+|+.+++.+++.+.- .++++++.+|+.++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~ 87 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKV 87 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccC
Confidence 44789999999999999999883 4899999999999999998853 46899999998764
No 418
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0072 Score=63.11 Aligned_cols=118 Identities=15% Similarity=0.223 Sum_probs=86.5
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcc
Q 004133 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ 129 (772)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~ 129 (772)
..++..+++. .|+.+|||-|.|+|.++..+++. +-.+++-.|+-+.-.++|++.+..+ ..++++.+-|++...
T Consensus 94 ia~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 94 IAMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 4566777776 79999999999999999999886 2357999999998888888877554 357999999999876
Q ss_pred ccc--CCCccEEEecccccccccCccchHHHHHHHHHHHhccccCe-EEEEEEcCchhhhh
Q 004133 130 VFM--DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLAESHVLG 187 (772)
Q Consensus 130 ~~~--~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG-~~ii~~~~~~~~~~ 187 (772)
|. +..+|.|+. |...+ -.++-.+..+||.+| ++++.+-+-+.+.+
T Consensus 171 -F~~ks~~aDaVFL----DlPaP--------w~AiPha~~~lk~~g~r~csFSPCIEQvqr 218 (314)
T KOG2915|consen 171 -FLIKSLKADAVFL----DLPAP--------WEAIPHAAKILKDEGGRLCSFSPCIEQVQR 218 (314)
T ss_pred -ccccccccceEEE----cCCCh--------hhhhhhhHHHhhhcCceEEeccHHHHHHHH
Confidence 55 467888763 32222 245666777888766 66666655444433
No 419
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.88 E-value=0.0016 Score=64.02 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=50.9
Q ss_pred eEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcc-cccCCC-ccEEEec
Q 004133 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ-VFMDET-FDVILDK 142 (772)
Q Consensus 71 ~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~-~~~~~s-fDvVi~~ 142 (772)
.|+|+.||-|..+..+++. +..|++||+++..++.++.++.-- ..+++|+++|+.++. .+.... ||+|+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999998 557999999999999997776433 237999999999864 122222 8999854
No 420
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.87 E-value=0.0057 Score=61.98 Aligned_cols=132 Identities=21% Similarity=0.227 Sum_probs=89.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEcc---HHHHHHhhcccCccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD---GIKFVREMKSSSATDEM 617 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~D---g~~~l~~~~~~~~~~~~ 617 (772)
+.+.=||.||+|+|.....|...- ....+|||+|.|+++|.+ +.-+. .++.+| |+.|
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~--~e~eg---dlil~DMG~Glpf------------- 108 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE--RELEG---DLILCDMGEGLPF------------- 108 (270)
T ss_pred CCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH--hhhhc---CeeeeecCCCCCC-------------
Confidence 456679999999998888887663 589999999999999986 22122 334444 3322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEE-e----CCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILII-D----VDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D----~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
....||.+|. - +.+.|.+. ..+.-.-..|+..+...|+.++-.|+.+..
T Consensus 109 ----------------------rpGtFDg~ISISAvQWLcnA~~s~----~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 109 ----------------------RPGTFDGVISISAVQWLCNADKSL----HVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred ----------------------CCCccceEEEeeeeeeecccCccc----cChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 2356787652 1 12223222 123333367999999999999999999999
Q ss_pred CChhHHHHHH-HHHHHhccceEEEeec
Q 004133 693 RSQATKDMVI-SRMKMVFNHLFCLQLE 718 (772)
Q Consensus 693 ~~~~~~~~v~-~~l~~vF~~v~~~~~~ 718 (772)
.+.+..+++. +.+++=|.--..++-+
T Consensus 163 en~~q~d~i~~~a~~aGF~GGlvVd~P 189 (270)
T KOG1541|consen 163 ENEAQIDMIMQQAMKAGFGGGLVVDWP 189 (270)
T ss_pred cchHHHHHHHHHHHhhccCCceeeecc
Confidence 9888888877 4556668764444433
No 421
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.87 E-value=0.0016 Score=66.27 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=70.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
.....|+++-.|-|..+..++.+.+...|.++|++|..++..++...+. -..++.++.+|+.+++..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~------------ 167 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE------------ 167 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T------------
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc------------
Confidence 3457899999999988777887666678999999999999999887332 246899999999999772
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 687 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv 687 (772)
..+|-||++.-.. ..+||..+..+++++|++-
T Consensus 168 ----------------------~~~drvim~lp~~--------------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 ----------------------GKFDRVIMNLPES--------------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----------------------T-EEEEEE--TSS--------------GGGGHHHHHHHEEEEEEEE
T ss_pred ----------------------cccCEEEECChHH--------------HHHHHHHHHHHhcCCcEEE
Confidence 4699999954221 2579999999999999874
No 422
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.85 E-value=0.0082 Score=61.46 Aligned_cols=114 Identities=17% Similarity=0.033 Sum_probs=80.9
Q ss_pred hHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccC
Q 004133 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTS 127 (772)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~ 127 (772)
+...++..++.. ..+.+.||+|.=||.-+..++.. .-..|+++|+.+...+.+.+..... ...++++++++.+
T Consensus 60 d~g~fl~~li~~---~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 60 DKGQFLQMLIRL---LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE 136 (237)
T ss_pred HHHHHHHHHHHH---hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh
Confidence 333444444443 34679999998888777666665 2246999999999999886655433 3479999998876
Q ss_pred c-c----cccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 128 M-Q----VFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 128 l-~----~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
. + ....++||+++. |+-.+ .+..++++..++||+||++++-
T Consensus 137 sLd~l~~~~~~~tfDfaFv----DadK~------nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFV----DADKD------NYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred hHHHHHhcCCCCceeEEEE----ccchH------HHHHHHHHHHhhcccccEEEEe
Confidence 2 1 235688999874 33322 2568999999999999999874
No 423
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.85 E-value=0.0057 Score=60.94 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=72.3
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC---CCCCeEEEEccHHHHH-HhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFV-REMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~---~~~rl~v~i~Dg~~~l-~~~~~~~~~~~ 616 (772)
...++||.||.|.|...+.+....+..+|++-|+++ +++..+...... ...++++..-|=-+-+ ....
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~------- 115 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL------- 115 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH-------
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc-------
Confidence 567899999999999998888886667999999999 888888776432 2456666654411111 1111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCCh
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 695 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 695 (772)
....||+||. |+-- ..-.-+.++..++.+|+++|.+++-...|..
T Consensus 116 -----------------------~~~~~D~IlasDv~Y-----------~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~ 161 (173)
T PF10294_consen 116 -----------------------EPHSFDVILASDVLY-----------DEELFEPLVRTLKRLLKPNGKVLLAYKRRRK 161 (173)
T ss_dssp -----------------------S-SSBSEEEEES--S------------GGGHHHHHHHHHHHBTT-TTEEEEEE-S-T
T ss_pred -----------------------ccccCCEEEEecccc-----------hHHHHHHHHHHHHHHhCCCCEEEEEeCEecH
Confidence 1357999986 3311 1123488999999999999887776666644
Q ss_pred hHHHHHHHHHHH
Q 004133 696 ATKDMVISRMKM 707 (772)
Q Consensus 696 ~~~~~v~~~l~~ 707 (772)
.. ..+++++++
T Consensus 162 ~~-~~F~~~~~k 172 (173)
T PF10294_consen 162 SE-QEFFDRLKK 172 (173)
T ss_dssp GG-CHHHHHH--
T ss_pred HH-HHHHHHhhh
Confidence 33 345666654
No 424
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.82 E-value=0.0027 Score=67.13 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=52.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...+||.||.|.|.++..|.+..+ .+++||+|+.+++.+++.++. .++++++.+|+.++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKV 87 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcC
Confidence 457899999999999999999875 599999999999999998864 57899999998764
No 425
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.81 E-value=0.0072 Score=63.79 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=70.3
Q ss_pred CCeEEEEcCCCc--hhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCCC--cEEEEeeccCccccc-----CCCcc
Q 004133 69 PPQILVPGCGNS--RLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQVFM-----DETFD 137 (772)
Q Consensus 69 ~~~ILDlGCG~G--~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~~--v~f~~~D~~~l~~~~-----~~sfD 137 (772)
-...||||||-= ....+.++. .-.+|+.+|+.+.++..++..+.. .++ ..++.+|+.+..... .+-+|
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~-~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD-NPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC-CCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 368999999953 344556554 445799999999999999887743 345 889999999854111 12233
Q ss_pred -----EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 138 -----VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 138 -----vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
.++..++|+++.+.++ -..++..+...|.||.++++.....+
T Consensus 148 ~~rPVavll~~vLh~v~D~~d----p~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDD----PAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCT----HHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCeeeeeeeeeccCCCccC----HHHHHHHHHHhCCCCceEEEEecCCC
Confidence 5778899999977544 57899999999999999999887654
No 426
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.78 E-value=0.0059 Score=60.90 Aligned_cols=110 Identities=13% Similarity=0.150 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
-.+.+|||+|.|+|..+..-+..|...|+..|+.+..+...+-+.+.++.++.|...|+.- .+..||+++...++.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----~~~~~Dl~LagDlfy 153 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC----CCcceeEEEeeceec
Confidence 3578999999999999999999998889999999888776655555566678888888765 357899999887765
Q ss_pred ccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhh
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 187 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~ 187 (772)
.-.. ..+++....++...|-.+++-+-+.++..+
T Consensus 154 ~~~~-------a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk 187 (218)
T COG3897 154 NHTE-------ADRLIPWKDRLAEAGAAVLVGDPGRAYLPK 187 (218)
T ss_pred CchH-------HHHHHHHHHHHHhCCCEEEEeCCCCCCCch
Confidence 4322 567777444444445555555555555443
No 427
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.019 Score=63.81 Aligned_cols=116 Identities=23% Similarity=0.192 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCC---CeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCccc-ccC-CCccEEE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGF---HGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQV-FMD-ETFDVIL 140 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~---~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~~-~~~-~sfDvVi 140 (772)
.|+.+|||+.++.|.=+.+++.... ..|+++|.++.=++.++.+...-+. ++...+.|...++. ... +.||.|+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 7899999999999999988888632 2369999999999988887755443 46788888776541 222 3599998
Q ss_pred e------ccccccccc------Cccc---hHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 141 D------KGGLDALME------PELG---HKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 141 ~------~~~l~~l~~------~~~~---~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
. .|++.--++ +++- ...-.++|..+.++|||||+++..|.+-
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 4 333311111 0000 0125689999999999999999988764
No 428
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.70 E-value=0.0028 Score=64.45 Aligned_cols=45 Identities=27% Similarity=0.363 Sum_probs=34.8
Q ss_pred CCCCeEEEEccccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHHh
Q 004133 541 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 585 (772)
Q Consensus 541 ~~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiDp~v~~vA~~~ 585 (772)
+.+.+|...|+++| +|+|.|.+..+ ..+|.+.|||+.+++.|++=
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 47789999999999 89999998432 35999999999999999753
No 429
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.70 E-value=0.0033 Score=62.03 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=53.5
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
-.+..+|.|+|.|+++..+.- -+|.+||.||...+.|++...++.+.++.|+.+||+.|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A--~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y 92 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA--ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY 92 (252)
T ss_pred hceeeccCCcchHHHHHHhhh--ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc
Confidence 457899999999999888873 48999999999999999998888889999999999998
No 430
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.63 E-value=0.014 Score=62.81 Aligned_cols=116 Identities=20% Similarity=0.200 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCcc-cccCCCccEEEec
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQ-VFMDETFDVILDK 142 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l~-~~~~~sfDvVi~~ 142 (772)
.++..|||+++|.|.=+..+++. +-..|++.|+++.-+..++.+....+. ++...+.|..... ......||.|+..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 68899999999999999888886 235799999999999988877755443 5677778888762 1234469999842
Q ss_pred c------ccccccc------Cccch---HHHHHHHHHHHhcc----ccCeEEEEEEcCc
Q 004133 143 G------GLDALME------PELGH---KLGNQYLSEVKRLL----KSGGKFVCLTLAE 182 (772)
Q Consensus 143 ~------~l~~l~~------~~~~~---~~~~~~l~ei~rvL----kpGG~~ii~~~~~ 182 (772)
. ++..-.+ +++-. ..-.++|+.+.+.+ ||||+++..|.+-
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 2 2221110 11000 12568999999999 9999999998764
No 431
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.62 E-value=0.089 Score=52.97 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=71.6
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHH---HHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTM---LNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 545 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v---~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
+++.||.|+|.=...|.=.+|+.+++.||-...= ++.+....|+ ++++++.+.+-+ ...
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~--~~~------------- 112 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL---SNVEVINGRAEE--PEY------------- 112 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH--TTT-------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEEEeeecc--ccc-------------
Confidence 7999999999555556667899999999999864 4455566788 469999998877 111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..+||+|+.=+.++ . ..+++.+...|+++|.+++---
T Consensus 113 -------------------~~~fd~v~aRAv~~--------l------~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 113 -------------------RESFDVVTARAVAP--------L------DKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp -------------------TT-EEEEEEESSSS--------H------HHHHHHHGGGEEEEEEEEEEES
T ss_pred -------------------CCCccEEEeehhcC--------H------HHHHHHHHHhcCCCCEEEEEcC
Confidence 37899999866554 1 6789999999999999987543
No 432
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.56 E-value=0.0095 Score=63.32 Aligned_cols=103 Identities=22% Similarity=0.285 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHh--ccC-C--------------------------C--
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN--VRD-R--------------------------S-- 116 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~--~~~-~--------------------------~-- 116 (772)
.+.+||..|||.|+++..|+..|+. +-|=++|--|+---.=.+ ... + |
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 4679999999999999999999984 777788877763211000 000 0 0
Q ss_pred ----------CcEEEEeeccCccc--ccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEE
Q 004133 117 ----------DMRWRVMDMTSMQV--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 178 (772)
Q Consensus 117 ----------~v~f~~~D~~~l~~--~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~ 178 (772)
.++...+|+.+.-. -..++||+|+....+|.-.+ +-.+++.|..+|||||+.+=+
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~N-------ileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHN-------ILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHH-------HHHHHHHHHHhccCCcEEEec
Confidence 11112234333210 11246999998766665433 789999999999999998643
No 433
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.50 E-value=0.0075 Score=63.00 Aligned_cols=61 Identities=28% Similarity=0.276 Sum_probs=51.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-CCCCCCCeEEEEccHHH
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIK 603 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-g~~~~~rl~v~i~Dg~~ 603 (772)
..+--||.||-|+|.|+.-|.+.. .+|.+||+||.|+.--.+.+ |.+....++|++||.+.
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 455679999999999999998885 58999999999887666655 77667899999999655
No 434
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.06 Score=56.46 Aligned_cols=128 Identities=15% Similarity=0.180 Sum_probs=88.7
Q ss_pred CCCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
.....|+.-|.|.|++..++.+.. |-.++...|.+..-.+-|++.| |+ ++.+++.+.|--.- .
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi--~~~vt~~hrDVc~~----G------- 170 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI--GDNVTVTHRDVCGS----G------- 170 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC--CcceEEEEeecccC----C-------
Confidence 345689999999999999888776 6669999999999999999999 54 56788887763210 0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChh
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 696 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 696 (772)
| ......+|+|++|+-++. +.+-.+..+|+.+|.-++|+ ++.-+
T Consensus 171 ---F-----------------~~ks~~aDaVFLDlPaPw---------------~AiPha~~~lk~~g~r~csF-SPCIE 214 (314)
T KOG2915|consen 171 ---F-----------------LIKSLKADAVFLDLPAPW---------------EAIPHAAKILKDEGGRLCSF-SPCIE 214 (314)
T ss_pred ---c-----------------cccccccceEEEcCCChh---------------hhhhhhHHHhhhcCceEEec-cHHHH
Confidence 0 111357999999986652 33334455888888777776 34444
Q ss_pred HHHHHHHHHHH-hccceEEEee
Q 004133 697 TKDMVISRMKM-VFNHLFCLQL 717 (772)
Q Consensus 697 ~~~~v~~~l~~-vF~~v~~~~~ 717 (772)
..+...+.|.+ =|-++..+.+
T Consensus 215 Qvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 215 QVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred HHHHHHHHHHhCCCceEEEEEe
Confidence 44444555555 4666665554
No 435
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.47 E-value=0.016 Score=60.64 Aligned_cols=96 Identities=22% Similarity=0.279 Sum_probs=68.0
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...++|.||.|.|..+.-++.++. +|.+-|+++.|...-++. |+ +|+ |..+|- +.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k-g~------~vl--~~~~w~-~~------------- 148 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK-GF------TVL--DIDDWQ-QT------------- 148 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC-CC------eEE--ehhhhh-cc-------------
Confidence 567899999999999999988874 599999999997665442 44 455 333341 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
+.+||+|.+ ++--|-. ..| ...|+.+++.|+|+|++++-++
T Consensus 149 -------------------~~~fDvIsc-LNvLDRc---~~P------~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 149 -------------------DFKFDVISC-LNVLDRC---DRP------LTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred -------------------CCceEEEee-hhhhhcc---CCH------HHHHHHHHHHhCCCCEEEEEEE
Confidence 367999964 1111110 013 7889999999999999997664
No 436
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.43 E-value=0.01 Score=64.12 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHh------c--cCCCCcEEEEeeccCcccccCCCccE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRN------V--RDRSDMRWRVMDMTSMQVFMDETFDV 138 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~------~--~~~~~v~f~~~D~~~l~~~~~~sfDv 138 (772)
...++|-+|.|.|.-..++.+.+ +.+|+-+|.+|.||+.++... . -..++++.+..|+.++-.-..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 35699999999999999999984 788999999999999886321 1 12367899999998854234568998
Q ss_pred EEecccccccccCccchHH----HHHHHHHHHhccccCeEEEEEE
Q 004133 139 ILDKGGLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 139 Vi~~~~l~~l~~~~~~~~~----~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
||.. +.+|.+ +.. -..+..-+.|.|+++|.+++-.
T Consensus 369 vIVD-----l~DP~t-ps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 369 VIVD-----LPDPST-PSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEe-----CCCCCC-cchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 8742 223221 111 3466777889999999998764
No 437
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.41 E-value=0.056 Score=55.18 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=102.7
Q ss_pred HHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcC-CCeEEEEeCCHHHHHHHHHHhccCCC--CcEEEEeeccCcccccC
Q 004133 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQVFMD 133 (772)
Q Consensus 57 l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g-~~~V~gvDiS~~~I~~a~~~~~~~~~--~v~f~~~D~~~l~~~~~ 133 (772)
+..++.. +.++.|+||-.+.+..+|.+.+ ...++++|+++..++.|.+....... .++..++|-...- -.+
T Consensus 10 va~~V~~-----~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l-~~~ 83 (226)
T COG2384 10 VANLVKQ-----GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL-ELE 83 (226)
T ss_pred HHHHHHc-----CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc-Ccc
Confidence 5556643 5569999999999999999985 46699999999999999887755443 5666667764322 234
Q ss_pred CCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccccccCCcEEEEEEcCCCCCCCCC
Q 004133 134 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPS 213 (772)
Q Consensus 134 ~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~ 213 (772)
..+|+|+..|+-..+ +..++++-.+-|+.=-+|++..-.++..+++++.. .+|.+....+... ..
T Consensus 84 d~~d~ivIAGMGG~l---------I~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~--~~~~I~~E~ileE----~~ 148 (226)
T COG2384 84 DEIDVIVIAGMGGTL---------IREILEEGKEKLKGVERLILQPNIHTYELREWLSA--NSYEIKAETILEE----DG 148 (226)
T ss_pred CCcCEEEEeCCcHHH---------HHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHh--CCceeeeeeeecc----cC
Confidence 589999988866555 66888888888875456666655544444433332 2799999888753 23
Q ss_pred cceEEEEEEecC
Q 004133 214 LQTFMVVADKEN 225 (772)
Q Consensus 214 l~~f~~~~~K~~ 225 (772)
.-|=+.++.+..
T Consensus 149 kiYEIlv~e~~~ 160 (226)
T COG2384 149 KIYEILVVEKSS 160 (226)
T ss_pred eEEEEEEEecCC
Confidence 444556666654
No 438
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.41 E-value=0.013 Score=63.93 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=63.3
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEeccccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLD 146 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~ 146 (772)
.++.++||+||++|.++..|.++|. .|++||..+ +.... ...++++....|..... .+.+.+|.+++..+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-----l~~~L-~~~~~V~h~~~d~fr~~-p~~~~vDwvVcDmve- 280 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-----MAQSL-MDTGQVEHLRADGFKFR-PPRKNVDWLVCDMVE- 280 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-----cCHhh-hCCCCEEEEeccCcccC-CCCCCCCEEEEeccc-
Confidence 4789999999999999999999998 799999665 22222 34568999998887765 236789998874432
Q ss_pred ccccCccchHHHHHHHHHHHhccccC
Q 004133 147 ALMEPELGHKLGNQYLSEVKRLLKSG 172 (772)
Q Consensus 147 ~l~~~~~~~~~~~~~l~ei~rvLkpG 172 (772)
.| .++.+-|.+.|..|
T Consensus 281 ---~P-------~rva~lm~~Wl~~g 296 (357)
T PRK11760 281 ---KP-------ARVAELMAQWLVNG 296 (357)
T ss_pred ---CH-------HHHHHHHHHHHhcC
Confidence 21 35556666666544
No 439
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.39 E-value=0.0083 Score=58.96 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=47.2
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhc
Q 004133 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 545 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
.|+.+.+|+|.-+..++..+ .+|.+||+||.-++.|+... |. .++++++.+|..+++++..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv--~~~I~~i~gD~~~~~~~~~ 65 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGV--ADNIDFICGDFFELLKRLK 65 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEeCCHHHHHhhcc
Confidence 47888889888888777775 47999999999999999876 54 6789999999999877754
No 440
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.38 E-value=0.014 Score=62.40 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=69.3
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHH---HHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLN---LAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~---vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
+.++||.||+|.|.-.--+.+..+. .|.++|-++--.- +++++.|. +. .......|++.+.. .
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~--~~-~~~~lplgvE~Lp~-~--------- 180 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQ--DP-PVFELPLGVEDLPN-L--------- 180 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCC--Cc-cEEEcCcchhhccc-c---------
Confidence 4579999999999887666665443 7888887765433 44555563 22 23344577777655 2
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
..||+||+ --.---+..| .+.|..+++.|++||.+|+-..
T Consensus 181 -----------------------~~FDtVF~----MGVLYHrr~P------l~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 181 -----------------------GAFDTVFS----MGVLYHRRSP------LDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred -----------------------CCcCEEEE----eeehhccCCH------HHHHHHHHHhhCCCCEEEEEEe
Confidence 56999986 1111113334 7899999999999999997654
No 441
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.34 E-value=0.0055 Score=65.22 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=53.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
....|+.||-|.|.++..|.+.. .++++||+|+...+.-++.|. .+++++++.+|+.+|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKW 88 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTS
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hcccceeeecchhcc
Confidence 45789999999999999999987 689999999999999999887 578999999999986
No 442
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.27 E-value=0.0049 Score=66.26 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCCeEEEEccccc----HHHHHHHHhCC----CCcEEEEEcCHHHHHHHHHh
Q 004133 542 KSVKAVVIGLGAG----LLPMFLHECMP----FVGIEAVELDLTMLNLAEDY 585 (772)
Q Consensus 542 ~~~~vLviGlG~G----~l~~~L~~~~p----~~~i~~VEiDp~v~~vA~~~ 585 (772)
.+.||...|+++| +++|.|.+.++ ..+|.+.|||+.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 4589999999999 89999998754 35899999999999999764
No 443
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.21 E-value=0.0088 Score=59.08 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=74.1
Q ss_pred CCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhc-cCCCCcEEEEeeccCcccccCCCccEEEecccccc
Q 004133 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~-~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
.+.+.|+|+|+|.++...+.. ..+|++|+..+...+.|.++.. ....+++.+++|+.+.. | +.-|+|+|-. |+.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-f--e~ADvvicEm-lDT 107 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-F--ENADVVICEM-LDT 107 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-c--cccceeHHHH-hhH
Confidence 479999999999999877766 4579999999998888866642 33458999999999988 6 5679988643 443
Q ss_pred -cccCccchHHHHHHHHHHHhccccCeEEE
Q 004133 148 -LMEPELGHKLGNQYLSEVKRLLKSGGKFV 176 (772)
Q Consensus 148 -l~~~~~~~~~~~~~l~ei~rvLkpGG~~i 176 (772)
+...+ ....++.+...||.++.++
T Consensus 108 aLi~E~-----qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 108 ALIEEK-----QVPVINAVLEFLRYDPTII 132 (252)
T ss_pred Hhhccc-----ccHHHHHHHHHhhcCCccc
Confidence 33322 3466777777888888765
No 444
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.13 E-value=0.015 Score=61.86 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=39.9
Q ss_pred CCCeEEEEccccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHHh
Q 004133 542 KSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 585 (772)
Q Consensus 542 ~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiDp~v~~vA~~~ 585 (772)
.+.+|...|+++| +++|.|.+.+| ..+|++.|||..+++.|+.=
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 5889999999999 99999999996 36999999999999999753
No 445
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.12 E-value=0.026 Score=61.06 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=66.7
Q ss_pred chhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccC
Q 004133 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (772)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~ 127 (772)
..+.+...+..++.. .++..++|.-||.|..+..+++. +...|+|+|.++.+++.++++......++++++++..+
T Consensus 4 H~pVll~Evl~~L~~---~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 4 HQSVLLDEVVEGLNI---KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred CcchhHHHHHHhcCc---CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 344555566666654 57889999999999999999886 33679999999999999988775444578888888877
Q ss_pred cc----cccCCCccEEEe
Q 004133 128 MQ----VFMDETFDVILD 141 (772)
Q Consensus 128 l~----~~~~~sfDvVi~ 141 (772)
+. .....++|.|+.
T Consensus 81 l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILV 98 (305)
T ss_pred HHHHHHhcCCCcccEEEE
Confidence 54 112345776654
No 446
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.1 Score=52.48 Aligned_cols=146 Identities=17% Similarity=0.194 Sum_probs=97.1
Q ss_pred CCcceeecCCccchHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHH----H
Q 004133 504 SGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTM----L 579 (772)
Q Consensus 504 ~~~~~~~d~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v----~ 579 (772)
..+.|.+..+.|+. +++-||-.++ -....+||=||..+|+.++.+....+...|.+||..|.+ +
T Consensus 50 eYR~Wnp~RSKLaA----aIl~Gl~~~p--------i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl 117 (231)
T COG1889 50 EYREWNPRRSKLAA----AILKGLKNFP--------IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL 117 (231)
T ss_pred ceeeeCcchhHHHH----HHHcCcccCC--------cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH
Confidence 34556666666643 3444443222 255679999999999999999999987799999999976 4
Q ss_pred HHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCC
Q 004133 580 NLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSG 659 (772)
Q Consensus 580 ~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g 659 (772)
.+|++. +++--+.+||..=-+-.. --...|+|+.|+-.++.
T Consensus 118 ~~a~~R------~Ni~PIL~DA~~P~~Y~~------------------------------~Ve~VDviy~DVAQp~Q--- 158 (231)
T COG1889 118 DVAEKR------PNIIPILEDARKPEKYRH------------------------------LVEKVDVIYQDVAQPNQ--- 158 (231)
T ss_pred HHHHhC------CCceeeecccCCcHHhhh------------------------------hcccccEEEEecCCchH---
Confidence 555553 556778888864321111 02569999999976653
Q ss_pred CCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCC-------hhHHHHHHHHHHHhc
Q 004133 660 MTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS-------QATKDMVISRMKMVF 709 (772)
Q Consensus 660 ~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~-------~~~~~~v~~~l~~vF 709 (772)
..-+..++...|+++|-+++-+-.|+ .+.++.-+.+|.+-+
T Consensus 159 ---------a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 159 ---------AEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred ---------HHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcC
Confidence 26688899999999995554443332 334454566666554
No 447
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.02 E-value=0.018 Score=54.84 Aligned_cols=59 Identities=5% Similarity=-0.075 Sum_probs=47.2
Q ss_pred eEEEEcCCCchhHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc
Q 004133 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (772)
Q Consensus 71 ~ILDlGCG~G~ls~~La~~g~-~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~ 129 (772)
.+||+|||.|..+..++..+. .+++++|.++.+++.++++..... .++++....+.+-+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~~ 61 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDRD 61 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCCC
Confidence 489999999999999988764 379999999999999987764432 45888887776543
No 448
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.88 E-value=0.0051 Score=55.67 Aligned_cols=97 Identities=18% Similarity=0.077 Sum_probs=43.2
Q ss_pred EEEcCCCchhHHHHHHc----CCCeEEEEeCCHH---HHHHHHHHhccCCCCcEEEEeeccCc-ccccCCCccEEEeccc
Q 004133 73 LVPGCGNSRLSEHLYDA----GFHGITNVDFSKV---VISDMLRRNVRDRSDMRWRVMDMTSM-QVFMDETFDVILDKGG 144 (772)
Q Consensus 73 LDlGCG~G~ls~~La~~----g~~~V~gvDiS~~---~I~~a~~~~~~~~~~v~f~~~D~~~l-~~~~~~sfDvVi~~~~ 144 (772)
||+|+..|..+..+++. +..+++++|..+. .-+.+++ .....+++++.+|..+. +.++.++||+++.-+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68998888888777664 2236999999994 3333322 11234699999998764 2244679999886442
Q ss_pred ccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 145 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 145 l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
-.+ ......++.+.+.|+|||++++-+
T Consensus 79 H~~--------~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSY--------EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --H--------HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCH--------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 111 126788999999999999998764
No 449
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.86 E-value=0.012 Score=66.67 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=55.0
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCC-CcEEEEeeccCc
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSM 128 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~-~v~f~~~D~~~l 128 (772)
..+.+++.. ..+..+||+-||||.++..+++ +...|+||++++.+++.|+.++..++. +.+|+++-++++
T Consensus 373 s~i~e~~~l---~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 373 STIGEWAGL---PADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHHhCC---CCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 334444443 5567899999999999999876 466899999999999999877755544 899999966664
No 450
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.85 E-value=0.031 Score=60.76 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=47.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~~rl~v~i~Dg~~~ 604 (772)
+.+.||.+|+|+|.|.+|.++.. -.+|.+||-+... +.|++-+.-. .++.++++.|..-+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE
Confidence 45789999999999999999997 4599999998766 8888776221 245788887765443
No 451
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.85 E-value=0.021 Score=57.96 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC--CCCcEEEEeeccCcc---cccCCCccEEEe
Q 004133 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ---VFMDETFDVILD 141 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~--~~~v~f~~~D~~~l~---~~~~~sfDvVi~ 141 (772)
....|+|.-||-|..+..++..+. .|++||+++.-|.-|+.++.-- ..+++|+++|+.++- .+....+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 356899999999999999998876 5999999999998776655321 137999999998853 133344556654
No 452
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.83 E-value=0.029 Score=58.51 Aligned_cols=82 Identities=21% Similarity=0.124 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcccccCCCccEEEecccc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQVFMDETFDVILDKGGL 145 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~~~~~sfDvVi~~~~l 145 (772)
.+..+|+|+|||-=-++...... .-..|+|+||+..+++...+-....+...++...|+..-+ +....|+.+..-++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~--~~~~~DlaLllK~l 181 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP--PKEPADLALLLKTL 181 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH--TTSEESEEEEET-H
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC--CCCCcchhhHHHHH
Confidence 35789999999998888766554 2247999999999999887766666778899999998865 67889999988888
Q ss_pred ccccc
Q 004133 146 DALME 150 (772)
Q Consensus 146 ~~l~~ 150 (772)
..+..
T Consensus 182 p~le~ 186 (251)
T PF07091_consen 182 PCLER 186 (251)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 453
>PRK04148 hypothetical protein; Provisional
Probab=95.73 E-value=0.033 Score=52.92 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=44.0
Q ss_pred CCCCeEEEEcccccH-HHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHH
Q 004133 541 GKSVKAVVIGLGAGL-LPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 603 (772)
Q Consensus 541 ~~~~~vLviGlG~G~-l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~ 603 (772)
.+..++|+||+|.|. ++..|.+. +..|++||++|..++.|++. .++++++|-.+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~ 69 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFN 69 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------CCeEEECcCCC
Confidence 445789999999995 88888865 35999999999999988776 25788888654
No 454
>PRK10742 putative methyltransferase; Provisional
Probab=95.61 E-value=0.041 Score=57.58 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=54.0
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCC-------CC--CCCeEEEEccHHHHHHhhc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-------TQ--DKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~-------~~--~~rl~v~i~Dg~~~l~~~~ 609 (772)
+..++||.+=.|.|.....+... +.+|+.||-+|.+..+.++.+.- .. ..|++++.+|+.+||+...
T Consensus 87 g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 87 DYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 44568999999999998877766 35699999999999998876632 11 1689999999999998754
No 455
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.46 E-value=0.062 Score=59.12 Aligned_cols=147 Identities=14% Similarity=0.224 Sum_probs=91.2
Q ss_pred CCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-----CCC-----CCCCeEEEEccHHHHHHhhcc
Q 004133 542 KSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFT-----QDKSLKVHITDGIKFVREMKS 610 (772)
Q Consensus 542 ~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-----g~~-----~~~rl~v~i~Dg~~~l~~~~~ 610 (772)
...+||.||+| ||=|..|..... ..+.+|||+++.++-|++.. +.. .+-...++.+|... ..+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~--~~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS--ESLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC--SHHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc--chhhh
Confidence 66899999999 888999988753 48999999999999998776 100 01234567777642 11110
Q ss_pred cCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCc----HHHHHHHHHccCCCcEE
Q 004133 611 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLF 686 (772)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~----~~fl~~~~~~L~~~Gil 686 (772)
.+ .....+||+|=+=. + -+-.|-+ ..||+++.+.|+|||+|
T Consensus 138 --------~~-----------------~~~~~~FDvVScQF-a---------lHY~Fese~~ar~~l~Nvs~~Lk~GG~F 182 (331)
T PF03291_consen 138 --------KL-----------------PPRSRKFDVVSCQF-A---------LHYAFESEEKARQFLKNVSSLLKPGGYF 182 (331)
T ss_dssp --------TS-----------------SSTTS-EEEEEEES-----------GGGGGSSHHHHHHHHHHHHHTEEEEEEE
T ss_pred --------hc-----------------cccCCCcceeehHH-H---------HHHhcCCHHHHHHHHHHHHHhcCCCCEE
Confidence 00 01135899996511 1 1223332 45999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHH--------hcc-ceEEEeecCC------ceEEEEEecCCC
Q 004133 687 IVNLVSRSQATKDMVISRMKM--------VFN-HLFCLQLEED------VNLVLFGLSSES 732 (772)
Q Consensus 687 v~Nl~~~~~~~~~~v~~~l~~--------vF~-~v~~~~~~~~------~N~vl~a~~~~~ 732 (772)
+.-++. .. .++.+|++ .|. .+|.+..+.+ ++...|-+....
T Consensus 183 IgT~~d--~~---~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v 238 (331)
T PF03291_consen 183 IGTTPD--SD---EIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAV 238 (331)
T ss_dssp EEEEE---HH---HHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCS
T ss_pred EEEecC--HH---HHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCcC
Confidence 987743 22 24555555 222 5888877666 777778776653
No 456
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.40 E-value=0.24 Score=52.78 Aligned_cols=152 Identities=17% Similarity=0.195 Sum_probs=96.2
Q ss_pred ecCCccchHHHHHHHHHHh----hhhhhhhhhcccCCCCeEEEEccccc-HHHHHHHHhCCC--CcEEEEEcCHHHHHHH
Q 004133 510 VYHGYLASSYHMGIISGFT----LISSYLESVASVGKSVKAVVIGLGAG-LLPMFLHECMPF--VGIEAVELDLTMLNLA 582 (772)
Q Consensus 510 ~d~~~L~~~Y~~~m~~~l~----l~~~~~~~~~~~~~~~~vLviGlG~G-~l~~~L~~~~p~--~~i~~VEiDp~v~~vA 582 (772)
+|..||...=.+++=---. ++...+......+.|.+||.|-.|.| .+.-.|..+ |. .+|..+|.+|.-++.+
T Consensus 99 iDr~yLnaiGWrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~-~~~~~~i~LrDys~~Nv~~g 177 (311)
T PF12147_consen 99 IDRNYLNAIGWRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKH-PERPDSILLRDYSPINVEKG 177 (311)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhC-CCCCceEEEEeCCHHHHHHH
Confidence 7888888766665521111 11111222223589999999999999 554555555 44 6999999999999998
Q ss_pred HHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCC
Q 004133 583 EDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSG 659 (772)
Q Consensus 583 ~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g 659 (772)
++.- |+ .+-++++.+||.+.-.-.+ -..+++++|+ +|
T Consensus 178 ~~li~~~gL--~~i~~f~~~dAfd~~~l~~------------------------------l~p~P~l~iV--------sG 217 (311)
T PF12147_consen 178 RALIAERGL--EDIARFEQGDAFDRDSLAA------------------------------LDPAPTLAIV--------SG 217 (311)
T ss_pred HHHHHHcCC--ccceEEEecCCCCHhHhhc------------------------------cCCCCCEEEE--------ec
Confidence 8775 66 3446999999988522211 1366889887 12
Q ss_pred CCcCCcCCCc----HHHHHHHHHccCCCcEEEEEecCCChhHHHHHHHHHH
Q 004133 660 MTCPAADFVE----GSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMK 706 (772)
Q Consensus 660 ~s~Pp~~f~~----~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~ 706 (772)
+ -.-|-+ ..-|.-+.++|.|||.+|.---+-++.+ +++...|.
T Consensus 218 L---~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl-e~IAr~Lt 264 (311)
T PF12147_consen 218 L---YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL-EMIARVLT 264 (311)
T ss_pred c---hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch-HHHHHHHh
Confidence 2 122222 3357778899999999997653344442 33334433
No 457
>PRK10742 putative methyltransferase; Provisional
Probab=95.23 E-value=0.067 Score=56.02 Aligned_cols=87 Identities=10% Similarity=0.029 Sum_probs=63.7
Q ss_pred HHHhhcCCCCCCCC--eEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccC------C----CCcEEEEee
Q 004133 57 LISLIGAPTSSPPP--QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------R----SDMRWRVMD 124 (772)
Q Consensus 57 l~~~l~~~~~~~~~--~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~------~----~~v~f~~~D 124 (772)
+.+.+.. +++. +|||+-+|.|..+..++..|.. |+++|-++.+....+..+... . .+++.+.+|
T Consensus 78 l~kAvgl---k~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 78 VAKAVGI---KGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHhCC---CCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4444443 4555 9999999999999999999986 999999999887766554331 1 357888888
Q ss_pred ccCcccccCCCccEEEecccccc
Q 004133 125 MTSMQVFMDETFDVILDKGGLDA 147 (772)
Q Consensus 125 ~~~l~~~~~~sfDvVi~~~~l~~ 147 (772)
..++-.-...+||+|+.--++.+
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 87742112347999997776654
No 458
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.21 E-value=0.031 Score=56.04 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=66.1
Q ss_pred CCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccC--------CCCcEEEEeeccCcccccCCCccEE
Q 004133 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--------RSDMRWRVMDMTSMQVFMDETFDVI 139 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~--------~~~v~f~~~D~~~l~~~~~~sfDvV 139 (772)
.-.+.|||||.|.+...|+.. +-.-|.|.+|-..+-+..+.+.... .+++.....++...- .+-|.--
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l---pn~f~kg 137 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL---PNFFEKG 137 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc---cchhhhc
Confidence 468999999999999999887 3345899998887777666554221 235666666554421 1222211
Q ss_pred EecccccccccCcc----chH--HHHHHHHHHHhccccCeEEEEEEc
Q 004133 140 LDKGGLDALMEPEL----GHK--LGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 140 i~~~~l~~l~~~~~----~~~--~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
-..-.+..+.++-- ... .-..++.+..-+|++||.++.++-
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 11112222222110 000 034788999999999999988763
No 459
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.18 E-value=0.093 Score=54.25 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhccCCCC-cEEEEeeccCcc--cccCCCccEEEecc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQ--VFMDETFDVILDKG 143 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~~~~~-v~f~~~D~~~l~--~~~~~sfDvVi~~~ 143 (772)
.++..+||+|.-||.++..+.++|.+.|+++|..-..+..-.+ ..++ +.+...|+..+. .+. +..|++++.-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR----~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR----NDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh----cCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 4678999999999999999999999999999998866643322 2333 334555666554 122 3567777654
Q ss_pred cccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 144 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 144 ~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.|-. ...+|..+..+++++|-++...
T Consensus 153 SFIS----------L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 153 SFIS----------LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred ehhh----------HHHHHHHHHHhcCCCceEEEEe
Confidence 4432 4689999999999999887664
No 460
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.18 E-value=0.074 Score=57.43 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=68.7
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCCC-----CcEEEEeeccCcccccCCCccEE
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-----DMRWRVMDMTSMQVFMDETFDVI 139 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~~-----~v~f~~~D~~~l~~~~~~sfDvV 139 (772)
..+.+|||+|.|.|.-...+.+. -..+++.++.|+..-+..-.......+ +..=++.|-..++ ....|++|
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp--~ad~ytl~ 189 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP--AADLYTLA 189 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC--ccceeehh
Confidence 34567999999999888777665 234577888887543322222111111 1222333434444 34567776
Q ss_pred EecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhh
Q 004133 140 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVL 186 (772)
Q Consensus 140 i~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~ 186 (772)
|. ++-+..+.. +.-+..+++.+..++.|||.++++.-+.+.-.
T Consensus 190 i~---~~eLl~d~~-ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 190 IV---LDELLPDGN-EKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred hh---hhhhccccC-cchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 65 344333221 11155599999999999999999998876533
No 461
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.17 E-value=0.28 Score=57.02 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=94.9
Q ss_pred HHHHHHHHhcCCCCccccccchhhHHHHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc-C----CCeEEEEeCCHHH
Q 004133 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G----FHGITNVDFSKVV 103 (772)
Q Consensus 29 ~yWd~~y~~~~~~~~~eW~~~~~~l~~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~-g----~~~V~gvDiS~~~ 103 (772)
+|--..|........-|.|.. ..+..++.+.+.. .+..+|.|..||+|.+.....+. + ...++|.++.+..
T Consensus 151 E~ll~~fa~~~~k~~GEfyTP-~~v~~liv~~l~~---~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t 226 (489)
T COG0286 151 EYLLRKFAEAEGKEAGEFYTP-REVSELIVELLDP---EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTT 226 (489)
T ss_pred HHHHHHHHHhcCCCCCccCCh-HHHHHHHHHHcCC---CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHH
Confidence 455556665532333565554 5677777777764 46679999999999888665553 1 2459999999999
Q ss_pred HHHHHHHhccCCC--CcEEEEeeccCcccc----cCCCccEEEecccccccccCc------------------cchHHHH
Q 004133 104 ISDMLRRNVRDRS--DMRWRVMDMTSMQVF----MDETFDVILDKGGLDALMEPE------------------LGHKLGN 159 (772)
Q Consensus 104 I~~a~~~~~~~~~--~v~f~~~D~~~l~~~----~~~sfDvVi~~~~l~~l~~~~------------------~~~~~~~ 159 (772)
...++.+..-++. ++....+|-..-+.+ ..+.||.|+++..+....... .......
T Consensus 227 ~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (489)
T COG0286 227 YRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADL 306 (489)
T ss_pred HHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHH
Confidence 9888776644433 245566655544412 346799999877664111000 0001137
Q ss_pred HHHHHHHhccccCeEEEEEEc
Q 004133 160 QYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 160 ~~l~ei~rvLkpGG~~ii~~~ 180 (772)
..++.+...|+|||+.-++..
T Consensus 307 af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 307 AFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred HHHHHHHHhcCCCceEEEEec
Confidence 899999999999996655543
No 462
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.10 E-value=0.061 Score=63.10 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCCeEEEEcccccHHHHHHHHhCC--------CCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMP--------FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 604 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p--------~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~ 604 (772)
...+||..|+|+|.+...+....+ ...+.++|||+..+..|+............++.+|.+..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~ 101 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSY 101 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccc
Confidence 456899999999977776665553 147899999999999998775432223467777776654
No 463
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.03 E-value=0.28 Score=49.94 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=70.0
Q ss_pred HHHHHhhcCCCCCCCCeEEEEcCCCchhHHHHHHc---CCCeEEEEeCCHHHHHHHHHHhcc------------------
Q 004133 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVR------------------ 113 (772)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDlGCG~G~ls~~La~~---g~~~V~gvDiS~~~I~~a~~~~~~------------------ 113 (772)
+.++..+.......+.++-|..||.|.+.--+.-. ...+|++.|+++.+++.|++++.-
T Consensus 38 Ei~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e 117 (246)
T PF11599_consen 38 EIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE 117 (246)
T ss_dssp HHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence 34555555443356789999999999988554332 356799999999999999766210
Q ss_pred -------------------------CCCCcEEEEeeccCcc---cc-cCCCccEEEecccccccccCcc--chHHHHHHH
Q 004133 114 -------------------------DRSDMRWRVMDMTSMQ---VF-MDETFDVILDKGGLDALMEPEL--GHKLGNQYL 162 (772)
Q Consensus 114 -------------------------~~~~v~f~~~D~~~l~---~~-~~~sfDvVi~~~~l~~l~~~~~--~~~~~~~~l 162 (772)
........+.|+++.. .. .....|+|+..-....+.+.+. +..-...||
T Consensus 118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml 197 (246)
T PF11599_consen 118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQML 197 (246)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHH
Confidence 0124568888998833 01 2234699987555544444332 223388999
Q ss_pred HHHHhccccCeEEEE
Q 004133 163 SEVKRLLKSGGKFVC 177 (772)
Q Consensus 163 ~ei~rvLkpGG~~ii 177 (772)
+.++.+|-.++++.+
T Consensus 198 ~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 198 NSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHCCS-TT-EEEE
T ss_pred HHHHhhCCCCcEEEE
Confidence 999999954444444
No 464
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.00 E-value=0.066 Score=60.68 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcccCCCCeEEEEcccccHHHH----HHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC-CC
Q 004133 517 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPM----FLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QD 591 (772)
Q Consensus 517 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~----~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~-~~ 591 (772)
..|-+|+..+|.=.. +.+++.....++++|.|=|=|.. ........+++.+||-+|..+-.-.. ..+. =+
T Consensus 346 ~~Yq~Ai~~AL~Drv----pd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~ 420 (649)
T KOG0822|consen 346 DQYQQAILKALLDRV----PDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWD 420 (649)
T ss_pred HHHHHHHHHHHHhhC----cccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhc
Confidence 458888887754111 11223346678999999995443 33344456799999999987766544 3332 36
Q ss_pred CCeEEEEccHHHHHHhhcccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH
Q 004133 592 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 671 (772)
Q Consensus 592 ~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~ 671 (772)
.+++++-+|-+.|-.- ..+.|+|+..+-.+-.. .=+++|
T Consensus 421 ~~Vtii~~DMR~w~ap---------------------------------~eq~DI~VSELLGSFGD--------NELSPE 459 (649)
T KOG0822|consen 421 NRVTIISSDMRKWNAP---------------------------------REQADIIVSELLGSFGD--------NELSPE 459 (649)
T ss_pred CeeEEEeccccccCCc---------------------------------hhhccchHHHhhccccC--------ccCCHH
Confidence 8999999999998311 25689998766443222 225699
Q ss_pred HHHHHHHccCCCcEEEEEecC------CChhHHHHHHHHHHH--hccceEEEe
Q 004133 672 FLLTVKDALSEQGLFIVNLVS------RSQATKDMVISRMKM--VFNHLFCLQ 716 (772)
Q Consensus 672 fl~~~~~~L~~~Gilv~Nl~~------~~~~~~~~v~~~l~~--vF~~v~~~~ 716 (772)
.|.-+...|+|+||.+=--.+ .++-++.. +..... .|...|.+.
T Consensus 460 CLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~-v~a~~~~~~fe~~YVV~ 511 (649)
T KOG0822|consen 460 CLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQE-VKATNDPNAFEAPYVVL 511 (649)
T ss_pred HHHHHHhhcCCCceEccchhhhhhcccccHHHHHH-HHhcCCccccccceEEE
Confidence 999999999999998822111 12333333 344443 787766654
No 465
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.99 E-value=0.034 Score=56.61 Aligned_cols=106 Identities=9% Similarity=0.024 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-----CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc------c-cCCC
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-----GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV------F-MDET 135 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-----g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~------~-~~~s 135 (772)
.++.|+|+|.-+|.-+..+++. +..+|+|||+.-............-.++++++++|..+... . ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 5689999999999888777653 34679999995433221111111123689999999988541 0 1123
Q ss_pred ccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 136 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 136 fDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
..+|+.-. +|.... ..+.|+....++++|+++++.+..
T Consensus 112 ~vlVilDs--~H~~~h------vl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 112 PVLVILDS--SHTHEH------VLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SEEEEESS------SS------HHHHHHHHHHT--TT-EEEETSHH
T ss_pred ceEEEECC--CccHHH------HHHHHHHhCccCCCCCEEEEEecc
Confidence 34555322 111111 567778899999999999987644
No 466
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=94.97 E-value=0.5 Score=48.64 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=83.5
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHH---HHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLT---MLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~---v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
+.+++.||.|+|.=...|+=.+|+.+||.||-... -++.+.+..|+ ++++++.+.+-+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv~i~~~RaE~~~~~------------ 132 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL---ENVEIVHGRAEEFGQE------------ 132 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC---CCeEEehhhHhhcccc------------
Confidence 68999999999933333555789999999999875 45666777787 6799999988777222
Q ss_pred ccccccccCCCCCCCCCCCCCCCc-eeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHH
Q 004133 620 VHGNEITSNNTRSCNGNCTASNAR-VDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 698 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~-yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 698 (772)
.+ ||+|..=+... | ..+.+-+...|++||.+++-......+..
T Consensus 133 ----------------------~~~~D~vtsRAva~-----L---------~~l~e~~~pllk~~g~~~~~k~~~~~~e~ 176 (215)
T COG0357 133 ----------------------KKQYDVVTSRAVAS-----L---------NVLLELCLPLLKVGGGFLAYKGLAGKDEL 176 (215)
T ss_pred ----------------------cccCcEEEeehccc-----h---------HHHHHHHHHhcccCCcchhhhHHhhhhhH
Confidence 23 99999865544 1 56777888889998887654433333332
Q ss_pred HHH---HHHHHHhccceEEEeecC
Q 004133 699 DMV---ISRMKMVFNHLFCLQLEE 719 (772)
Q Consensus 699 ~~v---~~~l~~vF~~v~~~~~~~ 719 (772)
... ...+.-.+..++.+.++.
T Consensus 177 ~e~~~a~~~~~~~~~~~~~~~~p~ 200 (215)
T COG0357 177 PEAEKAILPLGGQVEKVFSLTVPE 200 (215)
T ss_pred HHHHHHHHhhcCcEEEEEEeecCC
Confidence 222 222222334555555544
No 467
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=94.91 E-value=0.1 Score=56.03 Aligned_cols=99 Identities=19% Similarity=0.247 Sum_probs=68.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc-CCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F-g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
..+-||.+|.|.|.|.+|..+.. ..+|.+||.+. |.+.|++-. +-.-.+|+.|+-|-.. +..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiE----die----------- 239 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIE----DIE----------- 239 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccc----ccc-----------
Confidence 34568999999999999998885 44999999875 677777765 2223578998877432 222
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHH---HHHHHHHccCCCcEEE
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS---FLLTVKDALSEQGLFI 687 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~---fl~~~~~~L~~~Gilv 687 (772)
-..+.|+||. +|.+-| ++.+. -+..+++-|+|+|...
T Consensus 240 -------------------LPEk~DviIS-----EPMG~m------L~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 240 -------------------LPEKVDVIIS-----EPMGYM------LVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred -------------------CchhccEEEe-----ccchhh------hhhHHHHHHHHHHHhhcCCCCccc
Confidence 1378999996 443333 33343 3445778999999765
No 468
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.80 E-value=0.35 Score=50.33 Aligned_cols=105 Identities=19% Similarity=0.286 Sum_probs=59.6
Q ss_pred CCCeEEEEccccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCccccc
Q 004133 542 KSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 617 (772)
Q Consensus 542 ~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~ 617 (772)
..++||+||=+.- +|+..|.. .| .+|++||||+.+++.-++.. |+ .++.+..|-++=+.+.-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~-~~-~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~-------- 109 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTG-LP-KRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEEL-------- 109 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTT--------
T ss_pred cCCEEEEEcCCcHHHHHHHhhC-CC-CeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHH--------
Confidence 4588999996654 55555533 34 59999999999998876554 66 39999999887765532
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCc-EEEEEecCCC
Q 004133 618 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIVNLVSRS 694 (772)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~G-ilv~Nl~~~~ 694 (772)
..+||+++.|- +....|| .-|+....+.|+..| ...+.+..++
T Consensus 110 -----------------------~~~fD~f~TDP--PyT~~G~---------~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 110 -----------------------RGKFDVFFTDP--PYTPEGL---------KLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp -----------------------SS-BSEEEE-----SSHHHH---------HHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred -----------------------hcCCCEEEeCC--CCCHHHH---------HHHHHHHHHHhCCCCceEEEEEecCc
Confidence 37899999953 2222233 568899999997766 5555554444
No 469
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.74 E-value=0.0064 Score=58.31 Aligned_cols=58 Identities=26% Similarity=0.357 Sum_probs=47.4
Q ss_pred CcEEEEeeccCcccccCCCccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 117 DMRWRVMDMTSMQVFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 117 ~v~f~~~D~~~l~~~~~~sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
.+.+++-...... |.+++.|+|++.+++.|+.-.+ ...++++++|+|||||++-|..-
T Consensus 30 ~vdlvc~As~e~~-F~dns~d~iyaeHvlEHlt~~E-----g~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 30 EVDLVCRASNESM-FEDNSVDAIYAEHVLEHLTYDE-----GTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred ccchhhhhhhhcc-CCCcchHHHHHHHHHHHHhHHH-----HHHHHHHHHHHhCcCcEEEEEcC
Confidence 4455544444556 9999999999999999998755 68999999999999999998753
No 470
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.67 E-value=0.32 Score=55.48 Aligned_cols=112 Identities=12% Similarity=0.176 Sum_probs=82.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
...+++.+=+|.|..+..|.... .+|++||++|..++.|++.-....-.+++++.+|+.++.....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~------------ 358 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW------------ 358 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc------------
Confidence 44679999999999999998553 5899999999999999988744434559999999999987753
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHH
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 700 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 700 (772)
....+|+||+|- |..|+ ++++++.+.+ +.|..|+- +.|....+.+.
T Consensus 359 ------------------~~~~~d~VvvDP----PR~G~--------~~~~lk~l~~-~~p~~IvY--VSCNP~TlaRD 404 (432)
T COG2265 359 ------------------EGYKPDVVVVDP----PRAGA--------DREVLKQLAK-LKPKRIVY--VSCNPATLARD 404 (432)
T ss_pred ------------------ccCCCCEEEECC----CCCCC--------CHHHHHHHHh-cCCCcEEE--EeCCHHHHHHH
Confidence 136799999953 23343 4788887776 55555554 44555555444
No 471
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.66 E-value=0.076 Score=50.51 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=44.8
Q ss_pred EEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEc
Q 004133 546 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHIT 599 (772)
Q Consensus 546 vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~ 599 (772)
++.||.|.|..+.++....|..+|.+||.+|.+.+.+++.+....-++++++..
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~ 55 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNA 55 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 789999999999999999888899999999999999999874322234666654
No 472
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.65 E-value=0.24 Score=54.38 Aligned_cols=121 Identities=11% Similarity=0.154 Sum_probs=89.1
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCC-CCCeEEEEccHHHHHHhhcccCccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSV 619 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~-~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~ 619 (772)
.....|+.+=.|.|..+.-++... ..+|.++||+|.-++..++..-+.. .+++..+.||+.+++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~----------- 254 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL----------- 254 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-----------
Confidence 346789998888885555555543 2359999999999999999996653 456999999999997663
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHH
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 699 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 699 (772)
..+|-||+-... .+.+|+..+.+.|+++|++-+-...++....+
T Consensus 255 ----------------------~~aDrIim~~p~--------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~ 298 (341)
T COG2520 255 ----------------------GVADRIIMGLPK--------------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEE 298 (341)
T ss_pred ----------------------ccCCEEEeCCCC--------------cchhhHHHHHHHhhcCcEEEEEeccchhhccc
Confidence 348999982211 34789999999999999999888777666433
Q ss_pred HHHHHHHHhc
Q 004133 700 MVISRMKMVF 709 (772)
Q Consensus 700 ~v~~~l~~vF 709 (772)
.....+....
T Consensus 299 ~~~~~i~~~~ 308 (341)
T COG2520 299 RPEKRIKSAA 308 (341)
T ss_pred chHHHHHHHH
Confidence 3344444444
No 473
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.52 E-value=0.32 Score=49.60 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=93.5
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHH-----HHHHhhcccCccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI-----KFVREMKSSSATD 615 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~-----~~l~~~~~~~~~~ 615 (772)
....|+.||.--|+...++.++... .+|.+||++|.-. .+.+..+.+|.. +=|.+.-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l------ 107 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEAL------ 107 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHc------
Confidence 4578999999999999999988754 4699999998532 233666666543 3332221
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-CcC--CCcHHHHHHHHHccCCCcEEEEEecC
Q 004133 616 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AAD--FVEGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~P-p~~--f~~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
....+|+|+.|....- .|...- ... -+....++.+...|+++|.|++=+.-
T Consensus 108 ------------------------~~~~~DvV~sD~ap~~--~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 108 ------------------------GGAPVDVVLSDMAPNT--SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred ------------------------CCCCcceEEecCCCCc--CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 1345899999987642 232111 111 23455667777899999999988764
Q ss_pred CChhHHHHHHHHHHHhccceEEEeecC----CceEEEEEe
Q 004133 693 RSQATKDMVISRMKMVFNHLFCLQLEE----DVNLVLFGL 728 (772)
Q Consensus 693 ~~~~~~~~v~~~l~~vF~~v~~~~~~~----~~N~vl~a~ 728 (772)
... .+.++..+++.|..|...+... .....++|.
T Consensus 162 g~~--~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~ 199 (205)
T COG0293 162 GED--FEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAK 199 (205)
T ss_pred CCC--HHHHHHHHHHhhceeEEecCccccCCCceEEEEEe
Confidence 322 2557999999999988877532 333445554
No 474
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.47 E-value=0.3 Score=48.63 Aligned_cols=146 Identities=18% Similarity=0.223 Sum_probs=93.8
Q ss_pred CCCeEEEEcccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEE----ccHHHHHHhhcccCcccc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHI----TDGIKFVREMKSSSATDE 616 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i----~Dg~~~l~~~~~~~~~~~ 616 (772)
+..+||.+|..-|+......+.. |+..|.+|||-+ +- +-+...++. .|-.-+.+-..
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~--p~~Ga~~i~~~dvtdp~~~~ki~e------- 130 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IE--PPEGATIIQGNDVTDPETYRKIFE------- 130 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------cc--CCCCcccccccccCCHHHHHHHHH-------
Confidence 35689999999999998777765 888999999843 21 122233333 34444332211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCC----cHHHHHHHHHccCCCcEEEEEecC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV----EGSFLLTVKDALSEQGLFIVNLVS 692 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~----~~~fl~~~~~~L~~~Gilv~Nl~~ 692 (772)
.-.+.+.|+|+.|...... |+.- -.+.. -.+.|.-+...+.|+|.|++-+|.
T Consensus 131 ---------------------~lp~r~VdvVlSDMapnaT--Gvr~-~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 131 ---------------------ALPNRPVDVVLSDMAPNAT--GVRI-RDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred ---------------------hCCCCcccEEEeccCCCCc--Ccch-hhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 0124789999999876532 3210 11111 122444455667899999999998
Q ss_pred CChhHHHHHHHHHHHhccceEEEeec----CCceEEEEEecCC
Q 004133 693 RSQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLSSE 731 (772)
Q Consensus 693 ~~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~vl~a~~~~ 731 (772)
.+.. ..+..+|+++|..|..++.. +.....++|++-.
T Consensus 187 g~e~--~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k 227 (232)
T KOG4589|consen 187 GSEE--ALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFK 227 (232)
T ss_pred CCch--HHHHHHHHHHhhhcEeeCCccccccccceeeeeeecc
Confidence 7655 34578999999999988753 3455677777654
No 475
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.28 E-value=0.37 Score=53.50 Aligned_cols=100 Identities=23% Similarity=0.201 Sum_probs=73.2
Q ss_pred eEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEc-cHHHHHHhhcccCcccccccccc
Q 004133 545 KAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHIT-DGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 545 ~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~-Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
+|+|+|.| -|.++..+.+.++..+|.++|+++.=++.|++++|.. .+..... |...-+.+..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t------------- 234 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELT------------- 234 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHh-------------
Confidence 89999999 6888788888888889999999999999999999752 1111111 4444444433
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCC
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 693 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 693 (772)
.+..+|++|- .++ ....++.+.+.++++|.+++.-+..
T Consensus 235 -----------------~g~g~D~vie--~~G--------------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 235 -----------------GGRGADVVIE--AVG--------------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred -----------------CCCCCCEEEE--CCC--------------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 1356999986 222 1568999999999999988765543
No 476
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.26 E-value=0.25 Score=53.28 Aligned_cols=48 Identities=33% Similarity=0.473 Sum_probs=43.3
Q ss_pred CCCCeEEEEccc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC
Q 004133 541 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT 589 (772)
Q Consensus 541 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~ 589 (772)
....+|||+|.| .|.++...++.+.-.+|.++|+++.-+++|++ ||..
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~ 216 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT 216 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe
Confidence 456799999999 78888888999988899999999999999999 9974
No 477
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=94.21 E-value=0.07 Score=58.09 Aligned_cols=91 Identities=24% Similarity=0.284 Sum_probs=65.7
Q ss_pred CCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 543 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 543 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
-..++.+|.|.|.+...+...+|. |.+|+.|..-+-.++.+++ + .+.-+.+|+++= .
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~---~-------------- 234 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD---T-------------- 234 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C---Ccceeccccccc---C--------------
Confidence 356899999999888888888876 8889998776666666665 2 267777887552 2
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEE-----eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILII-----DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~Iiv-----D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
++-|+|++ |..+.| + ..||++|++.|.|+|.+++
T Consensus 235 -------------------P~~daI~mkWiLhdwtDed-----------c--vkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 235 -------------------PKGDAIWMKWILHDWTDED-----------C--VKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred -------------------CCcCeEEEEeecccCChHH-----------H--HHHHHHHHHhCCCCCEEEE
Confidence 23467775 333222 1 6799999999999997775
No 478
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=94.21 E-value=0.12 Score=53.81 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=33.2
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHH
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL 581 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~v 581 (772)
....+|.||+|+|.++.+|.+. +..+|++||+++.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 4568999999999999999987 44589999999977754
No 479
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.02 E-value=0.28 Score=54.48 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=79.7
Q ss_pred CCCCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccCC-CCcEEEEeeccCcc--cccCCCccEEE
Q 004133 66 SSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--VFMDETFDVIL 140 (772)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~~-~~v~f~~~D~~~l~--~~~~~sfDvVi 140 (772)
+.|+-+|||+.+..|.=+.+++.. +-..|++-|.+..-+...+.++.+.+ .+......|...++ .|+. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 578999999999999877777664 33459999999988887777664433 34556667776654 2444 899998
Q ss_pred ecccccc--ccc-Cc------------cchHHHHHHHHHHHhccccCeEEEEEEcCc
Q 004133 141 DKGGLDA--LME-PE------------LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 182 (772)
Q Consensus 141 ~~~~l~~--l~~-~~------------~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~ 182 (772)
....... +.. +. ....+-+++|..+..++++||+++..|.+-
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 3322222 111 00 011236788899999999999999988763
No 480
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.96 E-value=0.22 Score=55.39 Aligned_cols=129 Identities=13% Similarity=0.160 Sum_probs=76.9
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 623 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 623 (772)
.++|.+=+|.|.++..|+... .+|.+||+++..++.|++...+..-++++++.+++-++.........+..
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~------- 268 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNR------- 268 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTT-------
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHh-------
Confidence 379999999999988898876 48999999999999999998655457799999998877544321000000
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEecCCChhHHHHHHH
Q 004133 624 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVIS 703 (772)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~ 703 (772)
..........+|+||+|- |..|+ +..+++.+.+ +. =++-+.|....+.+. +.
T Consensus 269 ----------~~~~~~~~~~~d~vilDP----PR~G~--------~~~~~~~~~~-~~----~ivYvSCnP~tlaRD-l~ 320 (352)
T PF05958_consen 269 ----------LKGIDLKSFKFDAVILDP----PRAGL--------DEKVIELIKK-LK----RIVYVSCNPATLARD-LK 320 (352)
T ss_dssp ----------GGGS-GGCTTESEEEE-------TT-S--------CHHHHHHHHH-SS----EEEEEES-HHHHHHH-HH
T ss_pred ----------hhhhhhhhcCCCEEEEcC----CCCCc--------hHHHHHHHhc-CC----eEEEEECCHHHHHHH-HH
Confidence 000001124699999952 33444 4777777764 32 245566666665555 45
Q ss_pred HHHHhc
Q 004133 704 RMKMVF 709 (772)
Q Consensus 704 ~l~~vF 709 (772)
.|.+-|
T Consensus 321 ~L~~~y 326 (352)
T PF05958_consen 321 ILKEGY 326 (352)
T ss_dssp HHHCCE
T ss_pred HHhhcC
Confidence 565533
No 481
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=93.91 E-value=0.096 Score=54.12 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=71.2
Q ss_pred CeEEEEcccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 621 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 621 (772)
.+||.||+|.|.+.--|.+..|+ ..|.++|-+|..+++-+++-++.+ .++...+-| +....
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~D-------lt~~~--------- 135 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWD-------LTSPS--------- 135 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhccccee-------ccchh---------
Confidence 38999999999666666666676 899999999999999999988754 334333333 11000
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 622 GNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~yD~Iiv-D~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
-. ...+...+|+|.+ =+.|. + ||... ...+.++.+.|+|||.+++-=.
T Consensus 136 --------~~-----~~~~~~svD~it~IFvLSA-----i--~pek~--~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 136 --------LK-----EPPEEGSVDIITLIFVLSA-----I--HPEKM--QSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred --------cc-----CCCCcCccceEEEEEEEec-----c--ChHHH--HHHHHHHHHHhCCCcEEEEeec
Confidence 00 0112356887743 11222 1 22222 6789999999999999986433
No 482
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=93.87 E-value=0.24 Score=49.65 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=69.9
Q ss_pred CCCeEEEEcccccHHHHHHHHhCCCCc---------EEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhc
Q 004133 542 KSVKAVVIGLGAGLLPMFLHECMPFVG---------IEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 542 ~~~~vLviGlG~G~l~~~L~~~~p~~~---------i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
....++.-=+|+|+++.-.....++.. +.++|+|+.+++.|++.+ |+ ...+.+...|+.++- ..
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~--~~~i~~~~~D~~~l~--~~ 103 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV--EDYIDFIQWDARELP--LP 103 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEEEE--GGGGG--GT
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc--CCceEEEecchhhcc--cc
Confidence 345799999999999876666555555 899999999999999887 44 456899999988763 11
Q ss_pred ccCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc---CCCcHHHHHHHHHccCCCcEE
Q 004133 610 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA---DFVEGSFLLTVKDALSEQGLF 686 (772)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~---~f~~~~fl~~~~~~L~~~Gil 686 (772)
...+|+|+.|.-= |...... .-+-..|++.+++.|++..++
T Consensus 104 -------------------------------~~~~d~IvtnPPy-----G~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~ 147 (179)
T PF01170_consen 104 -------------------------------DGSVDAIVTNPPY-----GRRLGSKKDLEKLYRQFLRELKRVLKPRAVF 147 (179)
T ss_dssp -------------------------------TSBSCEEEEE--S-----TTSHCHHHHHHHHHHHHHHHHHCHSTTCEEE
T ss_pred -------------------------------cCCCCEEEECcch-----hhhccCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 2579999996522 2222211 123456888888989884444
Q ss_pred E
Q 004133 687 I 687 (772)
Q Consensus 687 v 687 (772)
+
T Consensus 148 l 148 (179)
T PF01170_consen 148 L 148 (179)
T ss_dssp E
T ss_pred E
Confidence 3
No 483
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=93.83 E-value=0.18 Score=54.84 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=71.2
Q ss_pred CCCCeEEEEcccccHHHHHHHHh-------CCCCcEEEEEcCHHHHHHHHHhcCCC--CCCCeEEEEccHHHHHHhhccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHEC-------MPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSS 611 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~-------~p~~~i~~VEiDp~v~~vA~~~Fg~~--~~~rl~v~i~Dg~~~l~~~~~~ 611 (772)
....+|+.-.+|+|.+...+.+. .+...+.++|+|+..+.+|+-.+-+. ......+..+|.+.--...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~--- 121 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI--- 121 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT---
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc---
Confidence 34457999999999877666553 36679999999999999998765322 2233568888865421110
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCC-----------CCCCCcCCcCCCcHHHHHHHHHcc
Q 004133 612 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS-----------SSGMTCPAADFVEGSFLLTVKDAL 680 (772)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~-----------~~g~s~Pp~~f~~~~fl~~~~~~L 680 (772)
...+||+||...-=+.. ......++..-.+..|++.+.+.|
T Consensus 122 ----------------------------~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L 173 (311)
T PF02384_consen 122 ----------------------------KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLL 173 (311)
T ss_dssp ----------------------------ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTE
T ss_pred ----------------------------cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhc
Confidence 13679999974311100 000001122223446999999999
Q ss_pred CCCcEEEEEec
Q 004133 681 SEQGLFIVNLV 691 (772)
Q Consensus 681 ~~~Gilv~Nl~ 691 (772)
+++|.+++=+.
T Consensus 174 k~~G~~~~Ilp 184 (311)
T PF02384_consen 174 KPGGRAAIILP 184 (311)
T ss_dssp EEEEEEEEEEE
T ss_pred ccccceeEEec
Confidence 99998776554
No 484
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=93.72 E-value=0.47 Score=51.45 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=53.8
Q ss_pred CeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
..++..=+|+|.-+..+.+.+|..+|.++|.||.+++.|++.+. ...+|++++.++-.++.+.+.
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~-~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS-DFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh-hcCCcEEEEeCCHHHHHHHHH
Confidence 46888889999988888888777899999999999999998763 124699999999888766553
No 485
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.61 E-value=0.32 Score=54.03 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=105.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 616 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~ 616 (772)
....|||.+...-|.=+.+++.++.+. .|.+-|.+..-+..-+..+ |+ .+.-+...||.+|-++.-
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv---~ntiv~n~D~~ef~~~~~------- 309 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV---TNTIVSNYDGREFPEKEF------- 309 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC---CceEEEccCccccccccc-------
Confidence 445789999999887778888887664 8889998888777766654 65 467888899997732211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC--------------CCcHHHHHHHHHccCC
Q 004133 617 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD--------------FVEGSFLLTVKDALSE 682 (772)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~--------------f~~~~fl~~~~~~L~~ 682 (772)
...||=|++|+-.+- .|+-.-++. -+..+.|..+...+++
T Consensus 310 ------------------------~~~fDRVLLDAPCSG--tgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~ 363 (460)
T KOG1122|consen 310 ------------------------PGSFDRVLLDAPCSG--TGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKA 363 (460)
T ss_pred ------------------------CcccceeeecCCCCC--CcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccC
Confidence 237999999985542 123222222 2467788889999999
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhccceEEEee
Q 004133 683 QGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQL 717 (772)
Q Consensus 683 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~ 717 (772)
||+||....+-..+..+.+++.+-.-|+++-..+.
T Consensus 364 GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~ 398 (460)
T KOG1122|consen 364 GGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPT 398 (460)
T ss_pred CcEEEEEeeecchhhhHHHHHHHHHhCCceEeccc
Confidence 99999999888888889999999999998777664
No 486
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=93.56 E-value=0.3 Score=48.93 Aligned_cols=112 Identities=9% Similarity=0.083 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHH------HHHHHHh-ccCCCCcEEEEeeccCcccccCCCcc
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVI------SDMLRRN-VRDRSDMRWRVMDMTSMQVFMDETFD 137 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I------~~a~~~~-~~~~~~v~f~~~D~~~l~~~~~~sfD 137 (772)
+++++|+|+=.|.|.++.-+... |. ..|++.-..+... ..++... .....+.+.+-.+...+. +.+..|
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--~pq~~d 124 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--APQKLD 124 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC--CCCccc
Confidence 78999999999999999988775 32 2466655444311 1111111 011234555555555554 445567
Q ss_pred EEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEc
Q 004133 138 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 180 (772)
Q Consensus 138 vVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~ 180 (772)
+++.....+-+.....++....++...+++.|||||.|++.+.
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 6665443333332222233478999999999999999999863
No 487
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=93.48 E-value=0.49 Score=51.87 Aligned_cols=113 Identities=18% Similarity=0.144 Sum_probs=78.8
Q ss_pred CCCCeEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 620 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~ 620 (772)
....++|.||.+.|+.+..|.+.. .+|++||..|.--. +..+++++.+.+|++.|...
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~-------L~~~~~V~h~~~d~fr~~p~------------- 267 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQS-------LMDTGQVEHLRADGFKFRPP------------- 267 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHh-------hhCCCCEEEEeccCcccCCC-------------
Confidence 345789999999999999999873 59999996663222 23579999999999998432
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCC--cEEEEEecCCC---h
Q 004133 621 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ--GLFIVNLVSRS---Q 695 (772)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~--Gilv~Nl~~~~---~ 695 (772)
...+|++++|+-.. | ...++.+.+-|..| .-+|+|+-=.- -
T Consensus 268 --------------------~~~vDwvVcDmve~--------P------~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~ 313 (357)
T PRK11760 268 --------------------RKNVDWLVCDMVEK--------P------ARVAELMAQWLVNGWCREAIFNLKLPMKKRY 313 (357)
T ss_pred --------------------CCCCCEEEEecccC--------H------HHHHHHHHHHHhcCcccEEEEEEEcCCCCCH
Confidence 25699999998654 2 46677777777554 57788874322 2
Q ss_pred hHHHHHHHHHHHhc
Q 004133 696 ATKDMVISRMKMVF 709 (772)
Q Consensus 696 ~~~~~v~~~l~~vF 709 (772)
+.....++.+.+.+
T Consensus 314 ~~v~~~l~~i~~~l 327 (357)
T PRK11760 314 EEVRQCLELIEEQL 327 (357)
T ss_pred HHHHHHHHHHHHHH
Confidence 22233445555544
No 488
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.44 E-value=0.071 Score=51.71 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccC----CCCcEEEEeeccCcc-cccCCCccEEE
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQ-VFMDETFDVIL 140 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~----~~~v~f~~~D~~~l~-~~~~~sfDvVi 140 (772)
.+.+|||+|.|--.++-.|... ....|...|-.+..++..++....+ ..++..+..+...-. .....+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4679999999976666444332 4457999999999998876554322 112222222222111 13456999999
Q ss_pred ecccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcCchhhhhcccc
Q 004133 141 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 191 (772)
Q Consensus 141 ~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~~~~~~l~~ 191 (772)
+..++..-.. ...+.+.|.++|+|.|+-++.+--...-+..+..
T Consensus 109 aADClFfdE~-------h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~d 152 (201)
T KOG3201|consen 109 AADCLFFDEH-------HESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLD 152 (201)
T ss_pred eccchhHHHH-------HHHHHHHHHHHhCcccceeEecCcccchHHHHHH
Confidence 9877654322 6789999999999999977665444343333333
No 489
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.37 E-value=0.37 Score=49.73 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=70.8
Q ss_pred CCCCCeEEEEcCCCchhHHHHHHc-CC-CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCccc--ccCCCccEEEe
Q 004133 66 SSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQV--FMDETFDVILD 141 (772)
Q Consensus 66 ~~~~~~ILDlGCG~G~ls~~La~~-g~-~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~~--~~~~sfDvVi~ 141 (772)
.+|+.+||-||+++|+...+..+. |. .-|+++++|+..=...... ++.++|+--+.-|+..... +.-.-.|+|++
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nm-AkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINM-AKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHH-hhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence 478999999999999998888876 32 3499999998765555333 3556788888888876430 11223444443
Q ss_pred cccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 142 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 142 ~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
+-..+....-+.-+..-.||+||.|++.-
T Consensus 233 ---------Dvaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 233 ---------DVAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ---------cCCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 22223334555567888999999998764
No 490
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.27 E-value=0.57 Score=50.62 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=44.1
Q ss_pred CCeEEEEcCCCchhHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhccC---CCCcEEEEeecc----C-cccccCCCccE
Q 004133 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMDMT----S-MQVFMDETFDV 138 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~--g~~~V~gvDiS~~~I~~a~~~~~~~---~~~v~f~~~D~~----~-l~~~~~~sfDv 138 (772)
..++||||||.+..-..|... |+ +++|+|+++..++.|++....+ ...++++...-. + +. .+++.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~-~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGII-QPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTST-T--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhh-cccceeeE
Confidence 468999999999665444433 66 7999999999999998887655 235666544221 1 11 23468999
Q ss_pred EEecccccccc
Q 004133 139 ILDKGGLDALM 149 (772)
Q Consensus 139 Vi~~~~l~~l~ 149 (772)
.+|+.-|+.-.
T Consensus 181 tmCNPPFy~s~ 191 (299)
T PF05971_consen 181 TMCNPPFYSSQ 191 (299)
T ss_dssp EEE-----SS-
T ss_pred EecCCccccCh
Confidence 99988887653
No 491
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.27 E-value=0.18 Score=51.35 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=53.3
Q ss_pred CCCCeEEEEcccccHHHHHHHH---hC-CCCcEEEEEcCHHHH-HHHHHhcCCCCCCCeEEEEccHHH--HHHhhcccCc
Q 004133 541 GKSVKAVVIGLGAGLLPMFLHE---CM-PFVGIEAVELDLTML-NLAEDYFGFTQDKSLKVHITDGIK--FVREMKSSSA 613 (772)
Q Consensus 541 ~~~~~vLviGlG~G~l~~~L~~---~~-p~~~i~~VEiDp~v~-~vA~~~Fg~~~~~rl~v~i~Dg~~--~l~~~~~~~~ 613 (772)
-+|..|+.+|.--|+-..|.+. .+ +..+|.+||||..-. ..|.+.-.+ .+|+++++||..+ .+.....
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~--~~rI~~i~Gds~d~~~~~~v~~--- 105 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM--SPRITFIQGDSIDPEIVDQVRE--- 105 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG------TTEEEEES-SSSTHHHHTSGS---
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc--cCceEEEECCCCCHHHHHHHHH---
Confidence 4678899999986644444432 33 667999999975332 333333233 5899999999764 2222210
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEE
Q 004133 614 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 688 (772)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~ 688 (772)
........+||.|.+-.- .+ -..-|+.....+++|+.+||
T Consensus 106 ------------------------~~~~~~~vlVilDs~H~~---------~h--vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 106 ------------------------LASPPHPVLVILDSSHTH---------EH--VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp ------------------------S----SSEEEEESS-------------SS--HHHHHHHHHHT--TT-EEEE
T ss_pred ------------------------hhccCCceEEEECCCccH---------HH--HHHHHHHhCccCCCCCEEEE
Confidence 011345678888765331 11 14556778999999999985
No 492
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=93.22 E-value=0.35 Score=49.61 Aligned_cols=99 Identities=23% Similarity=0.342 Sum_probs=70.5
Q ss_pred EEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 546 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 546 vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
|..||+-=|.||.+|.+...-.++.++|+.+.-++-|++.. |+ .++++++.+||++-+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l--~~~i~~rlgdGL~~l~~~-------------- 64 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL--EDRIEVRLGDGLEVLKPG-------------- 64 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--GG--------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--cccEEEEECCcccccCCC--------------
Confidence 57899999999999999977668999999999999999875 55 579999999999976552
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEEec
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 691 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 691 (772)
...|.|++- || -.-+-.++|+.....+...--||+.=.
T Consensus 65 -------------------e~~d~ivIA--------GM----GG~lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 65 -------------------EDVDTIVIA--------GM----GGELIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp -------------------G---EEEEE--------EE-----HHHHHHHHHHTGGGGTT--EEEEEES
T ss_pred -------------------CCCCEEEEe--------cC----CHHHHHHHHHhhHHHhccCCeEEEeCC
Confidence 236888871 33 112457788888887876667887543
No 493
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.22 E-value=0.26 Score=50.33 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=40.4
Q ss_pred cccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHhc---CCCCCCCeEEEEccHHHHHHhhc
Q 004133 550 GLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 609 (772)
Q Consensus 550 GlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~F---g~~~~~rl~v~i~Dg~~~l~~~~ 609 (772)
|+|||++ .|..++ ..|.+|||||.-+..|+... |.+ +|+++++||-++......
T Consensus 104 g~gGnti-qfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~--~rItFI~GD~ld~~~~lq 160 (263)
T KOG2730|consen 104 GVGGNTI-QFALQG---PYVIAIDIDPVKIACARHNAEVYGVP--DRITFICGDFLDLASKLK 160 (263)
T ss_pred cCCchHH-HHHHhC---CeEEEEeccHHHHHHHhccceeecCC--ceeEEEechHHHHHHHHh
Confidence 5555554 333333 36999999999999999886 663 399999999988877764
No 494
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.16 E-value=0.2 Score=51.23 Aligned_cols=105 Identities=22% Similarity=0.173 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCchhHHHHHHc--------CC--CeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCcc-------cc
Q 004133 69 PPQILVPGCGNSRLSEHLYDA--------GF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-------VF 131 (772)
Q Consensus 69 ~~~ILDlGCG~G~ls~~La~~--------g~--~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l~-------~~ 131 (772)
-.+++|+....|.++..|.+. +. ..|++||+.+ | ..-+.+.-+++|+++.. .|
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----M-----aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----M-----APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----C-----CccCceEEeecccCCHhHHHHHHHHh
Confidence 368999999999999887664 11 1299999866 2 23457888999999854 46
Q ss_pred cCCCccEEEecccccccccCc-cc---hHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 132 MDETFDVILDKGGLDALMEPE-LG---HKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 132 ~~~sfDvVi~~~~l~~l~~~~-~~---~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
..+.-|+|++.|.-+.---.+ ++ ..++..+|.-...+|||||.|+.--|...
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 677999999988755321111 01 13477888889999999999987655443
No 495
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.07 E-value=1.6 Score=45.50 Aligned_cols=107 Identities=19% Similarity=0.114 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEeeccCc-ccccCCCccEEEecccc
Q 004133 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-QVFMDETFDVILDKGGL 145 (772)
Q Consensus 68 ~~~~ILDlGCG~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~D~~~l-~~~~~~sfDvVi~~~~l 145 (772)
.+.+||-+|=+.- .|..++-. ..++|+.+|+.+..|+..++.+.+.+.+++....|+.+. |.--.++||+++.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~T---- 118 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFT---- 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEe----
Confidence 5789999995553 33444433 356899999999999999888877777899999999883 3122489999875
Q ss_pred cccccCccchHHHHHHHHHHHhccccCeEEEEEEcCch
Q 004133 146 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 183 (772)
Q Consensus 146 ~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~~~ 183 (772)
+|.....-+..++......||.-|......++..
T Consensus 119 ----DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 119 ----DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp -------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred ----CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 2232334478899999999997774455555543
No 496
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.93 E-value=0.26 Score=54.10 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcCC-CchhHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhccCCCCcEEEEe-eccCcccccCCCccEEEec
Q 004133 66 SSPPPQILVPGCG-NSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-DMTSMQVFMDETFDVILDK 142 (772)
Q Consensus 66 ~~~~~~ILDlGCG-~G~ls~~La~~-g~~~V~gvDiS~~~I~~a~~~~~~~~~~v~f~~~-D~~~l~~~~~~sfDvVi~~ 142 (772)
.+|+.+|+-+|+| -|.++.++++. | .+|+++|.|+.-.+.|++.-. -.++.. |...++ --.+.||+|++.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-----d~~i~~~~~~~~~-~~~~~~d~ii~t 236 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-----DHVINSSDSDALE-AVKEIADAIIDT 236 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-----cEEEEcCCchhhH-HhHhhCcEEEEC
Confidence 3689999999988 34677888884 8 579999999998888865532 123332 222222 112349999874
Q ss_pred ccccccccCccchHHHHHHHHHHHhccccCeEEEEEEcC
Q 004133 143 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 181 (772)
Q Consensus 143 ~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~~~ 181 (772)
-. . ..+....+.|++||+++++-+.
T Consensus 237 v~-~-------------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 237 VG-P-------------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CC-h-------------hhHHHHHHHHhcCCEEEEECCC
Confidence 43 2 4667788899999999999766
No 497
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=92.72 E-value=0.49 Score=53.08 Aligned_cols=102 Identities=17% Similarity=0.266 Sum_probs=71.7
Q ss_pred CCCeEEEEcccccHH-HHHHHHhCCCCcEEEEEcCHHHHHHHHHhcCCC--CCCCeEEEEccHHHHHHhhcccCcccccc
Q 004133 542 KSVKAVVIGLGAGLL-PMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMS 618 (772)
Q Consensus 542 ~~~~vLviGlG~G~l-~~~L~~~~p~~~i~~VEiDp~v~~vA~~~Fg~~--~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~ 618 (772)
.+.++|.-=.|+|.= .++..+.-...+|++-|+||..+++.++...+. +++++++...||...+...
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~---------- 118 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR---------- 118 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS----------
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc----------
Confidence 345777766677743 345555434459999999999999999986332 2348999999999998632
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 619 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
..+||+|=+|-+.+ | ..||..+-+.++.||+|.+-
T Consensus 119 ----------------------~~~fD~IDlDPfGS--------p------~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 119 ----------------------QERFDVIDLDPFGS--------P------APFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp ----------------------TT-EEEEEE--SS----------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ----------------------cccCCEEEeCCCCC--------c------cHhHHHHHHHhhcCCEEEEe
Confidence 36799999987766 3 78999999999999999975
No 498
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.72 E-value=0.6 Score=50.06 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=62.1
Q ss_pred CeEEEEcccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHHhcCCCCCCCeEEEEccHHHHHHhhcccCcccccccccc
Q 004133 544 VKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 622 (772)
Q Consensus 544 ~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiDp~v~~vA~~~Fg~~~~~rl~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 622 (772)
.-.+..=+|+|+-+..+.+.+|.. +++++|-||..++.|++.+- ..++|++++.+.-..+-.....
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~-~~~~r~~~v~~~F~~l~~~l~~------------ 91 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK-EFDGRVTLVHGNFANLAEALKE------------ 91 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh-ccCCcEEEEeCcHHHHHHHHHh------------
Confidence 456788899999999888888865 69999999999999999863 1258999998875555444331
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCC
Q 004133 623 NEITSNNTRSCNGNCTASNARVDILIIDVDSP 654 (772)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~ 654 (772)
....++|-|++|+--+
T Consensus 92 ----------------~~i~~vDGiL~DLGVS 107 (314)
T COG0275 92 ----------------LGIGKVDGILLDLGVS 107 (314)
T ss_pred ----------------cCCCceeEEEEeccCC
Confidence 1136799999998443
No 499
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=92.67 E-value=0.087 Score=55.83 Aligned_cols=107 Identities=19% Similarity=0.229 Sum_probs=65.9
Q ss_pred CCCCeEEEEcCCCchhHHHHHHcCCCeEEEEeCCHHHHHHHHHHhcc--------CCCCcEEEEeecc---CcccccCC-
Q 004133 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR--------DRSDMRWRVMDMT---SMQVFMDE- 134 (772)
Q Consensus 67 ~~~~~ILDlGCG~G~ls~~La~~g~~~V~gvDiS~~~I~~a~~~~~~--------~~~~v~f~~~D~~---~l~~~~~~- 134 (772)
..+.+|||+|||.|...+.....|...+...|++...++.-.--+.. ......+...-.+ +......+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 35789999999999999988888866799999999888422110000 0001111111111 11101123
Q ss_pred -CccEEEecccccccccCccchHHHHHHHHHHHhccccCeEEEEEE
Q 004133 135 -TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 179 (772)
Q Consensus 135 -sfDvVi~~~~l~~l~~~~~~~~~~~~~l~ei~rvLkpGG~~ii~~ 179 (772)
.||+|.+.-++...... ...+.......++++|+++...
T Consensus 195 ~~ydlIlsSetiy~~~~~------~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSL------AVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred cchhhhhhhhhhhCcchh------hhhHhhhhhhcCCccchhhhhh
Confidence 78998888887766542 1222677778889999987653
No 500
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=92.54 E-value=0.26 Score=50.15 Aligned_cols=108 Identities=12% Similarity=0.187 Sum_probs=68.1
Q ss_pred eEEEEcccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHh---cCCCC-CCCeEEEEccH-HHHHHhhcccCccccccc
Q 004133 545 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY---FGFTQ-DKSLKVHITDG-IKFVREMKSSSATDEMSV 619 (772)
Q Consensus 545 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiDp~v~~vA~~~---Fg~~~-~~rl~v~i~Dg-~~~l~~~~~~~~~~~~~~ 619 (772)
+||.||.|+|--+.+...++|++.-.--|+|+....--+.| .+++. -+-+.+=+.+. -.+...
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~------------ 95 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELP------------ 95 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccc------------
Confidence 69999999999999999999999999999999986444444 34431 11122211111 111000
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCCCcHHHHHHHHHccCCCcEEEEE
Q 004133 620 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 689 (772)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~yD~IivD~~~~d~~~g~s~Pp~~f~~~~fl~~~~~~L~~~Gilv~N 689 (772)
.......||+|+. -+.-... |.. ....+++.+.+.|++||+|++-
T Consensus 96 -----------------~~~~~~~~D~i~~--~N~lHI~-----p~~-~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 96 -----------------APLSPESFDAIFC--INMLHIS-----PWS-AVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred -----------------cccCCCCcceeee--hhHHHhc-----CHH-HHHHHHHHHHHhCCCCCEEEEe
Confidence 0112467999986 1111111 111 2478999999999999999953
Done!