Query 004134
Match_columns 772
No_of_seqs 232 out of 716
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 5.9E-42 2E-46 311.6 9.7 96 179-275 9-104 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 1.1E-40 3.8E-45 307.0 10.5 96 179-276 11-108 (111)
3 2yus_A SWI/SNF-related matrix- 99.6 6.5E-15 2.2E-19 128.2 9.0 56 402-457 17-72 (79)
4 2elk_A SPCC24B10.08C protein; 99.3 4.7E-12 1.6E-16 103.8 7.0 49 402-450 8-58 (58)
5 1x41_A Transcriptional adaptor 99.2 4.1E-11 1.4E-15 98.7 7.1 51 401-451 6-57 (60)
6 1wgx_A KIAA1903 protein; MYB D 98.9 1E-09 3.4E-14 94.3 6.6 47 402-448 7-57 (73)
7 2cqr_A RSGI RUH-043, DNAJ homo 98.9 6.3E-10 2.2E-14 95.5 5.1 51 401-452 16-70 (73)
8 2yum_A ZZZ3 protein, zinc fing 98.8 2.5E-09 8.5E-14 91.5 5.3 46 402-447 7-58 (75)
9 1guu_A C-MYB, MYB proto-oncoge 98.8 4.7E-09 1.6E-13 83.6 5.5 45 403-447 3-48 (52)
10 2d9a_A B-MYB, MYB-related prot 98.8 9.8E-09 3.3E-13 84.2 7.2 46 402-447 7-53 (60)
11 2cu7_A KIAA1915 protein; nucle 98.8 8.2E-09 2.8E-13 87.8 6.7 47 401-447 7-53 (72)
12 1gvd_A MYB proto-oncogene prot 98.8 7.8E-09 2.7E-13 82.4 5.8 45 403-447 3-48 (52)
13 1w0t_A Telomeric repeat bindin 98.7 1.1E-08 3.6E-13 82.1 6.0 44 404-447 3-49 (53)
14 2dim_A Cell division cycle 5-l 98.7 2.2E-08 7.4E-13 84.6 7.3 46 402-447 8-54 (70)
15 3sjm_A Telomeric repeat-bindin 98.6 4.6E-08 1.6E-12 81.8 6.0 45 403-447 11-58 (64)
16 2eqr_A N-COR1, N-COR, nuclear 98.6 5.4E-08 1.8E-12 80.5 6.3 44 403-446 12-55 (61)
17 1ity_A TRF1; helix-turn-helix, 98.6 4.7E-08 1.6E-12 82.4 6.0 46 402-447 9-57 (69)
18 2din_A Cell division cycle 5-l 98.6 6.9E-08 2.4E-12 80.6 6.5 45 402-447 8-52 (66)
19 2cjj_A Radialis; plant develop 98.6 5.1E-08 1.7E-12 87.4 5.4 45 403-447 8-56 (93)
20 2ltp_A Nuclear receptor corepr 97.9 1.6E-08 5.5E-13 89.6 0.0 47 401-447 14-60 (89)
21 2iw5_B Protein corest, REST co 98.4 2E-07 6.9E-12 95.0 6.7 46 402-447 132-177 (235)
22 2llk_A Cyclin-D-binding MYB-li 98.4 4.6E-07 1.6E-11 77.8 6.9 45 402-447 22-66 (73)
23 2k9n_A MYB24; R2R3 domain, DNA 98.3 4.2E-07 1.4E-11 82.6 5.8 44 404-447 2-46 (107)
24 1gv2_A C-MYB, MYB proto-oncoge 98.3 4.6E-07 1.6E-11 81.7 5.9 45 403-447 4-49 (105)
25 2k9n_A MYB24; R2R3 domain, DNA 98.3 6.9E-07 2.4E-11 81.2 6.7 45 403-447 53-97 (107)
26 2yqk_A Arginine-glutamic acid 98.3 1.1E-06 3.6E-11 73.3 6.9 45 401-445 7-52 (63)
27 3osg_A MYB21; transcription-DN 98.3 5.1E-07 1.7E-11 84.4 5.4 45 403-447 11-55 (126)
28 1gv2_A C-MYB, MYB proto-oncoge 98.3 6.2E-07 2.1E-11 80.9 5.4 46 402-447 55-100 (105)
29 1h8a_C AMV V-MYB, MYB transfor 98.3 1.3E-06 4.3E-11 81.7 7.2 46 402-447 26-72 (128)
30 3osg_A MYB21; transcription-DN 98.3 7E-07 2.4E-11 83.4 5.5 45 403-447 62-106 (126)
31 2ckx_A NGTRF1, telomere bindin 98.2 1.2E-06 4E-11 77.0 5.8 43 405-447 2-49 (83)
32 2cqq_A RSGI RUH-037, DNAJ homo 98.2 1.4E-06 4.9E-11 74.5 6.2 48 403-452 8-59 (72)
33 2xag_B REST corepressor 1; ami 98.2 1.1E-06 3.9E-11 98.4 6.8 46 402-447 379-424 (482)
34 1h8a_C AMV V-MYB, MYB transfor 98.2 1.6E-06 5.5E-11 81.0 6.1 46 402-447 78-123 (128)
35 3zqc_A MYB3; transcription-DNA 98.2 6.8E-07 2.3E-11 84.0 3.0 44 404-447 3-47 (131)
36 3zqc_A MYB3; transcription-DNA 98.1 2E-06 6.9E-11 80.8 5.9 45 403-447 54-98 (131)
37 2z3y_A Lysine-specific histone 98.1 1.3E-06 4.5E-11 101.3 5.3 87 186-275 8-98 (662)
38 4gut_A Lysine-specific histone 98.1 4.2E-06 1.4E-10 99.4 9.5 90 178-273 214-321 (776)
39 2crg_A Metastasis associated p 98.1 4.5E-06 1.5E-10 71.0 5.8 44 403-446 8-52 (70)
40 2e5r_A Dystrobrevin alpha; ZZ 98.0 3.8E-06 1.3E-10 70.1 4.5 48 346-393 12-61 (63)
41 4eef_G F-HB80.4, designed hema 98.0 9.4E-07 3.2E-11 75.6 -0.3 43 403-445 20-66 (74)
42 1h89_C C-MYB, MYB proto-oncoge 97.9 9.2E-06 3.2E-10 78.5 6.1 46 402-447 109-154 (159)
43 4a69_C Nuclear receptor corepr 97.9 1.2E-05 4.2E-10 72.0 5.7 43 404-446 44-86 (94)
44 2roh_A RTBP1, telomere binding 97.9 1.2E-05 4.3E-10 75.2 6.0 45 403-447 31-80 (122)
45 1h89_C C-MYB, MYB proto-oncoge 97.9 1.5E-05 5.2E-10 76.9 6.5 46 402-447 57-103 (159)
46 2aje_A Telomere repeat-binding 97.8 1.1E-05 3.8E-10 73.8 4.5 46 402-447 12-62 (105)
47 2dip_A Zinc finger SWIM domain 97.8 6E-06 2E-10 74.6 1.5 54 346-410 32-86 (98)
48 2juh_A Telomere binding protei 97.8 1.8E-05 6.3E-10 74.0 4.7 46 402-447 16-66 (121)
49 2fc7_A ZZZ3 protein; structure 97.7 2.8E-05 9.5E-10 68.1 4.3 51 345-395 21-76 (82)
50 1x58_A Hypothetical protein 49 97.5 9.7E-05 3.3E-09 61.5 4.8 46 402-447 7-55 (62)
51 2xag_A Lysine-specific histone 97.2 0.00023 8E-09 85.4 5.4 86 186-274 179-268 (852)
52 1tot_A CREB-binding protein; z 96.9 0.00017 5.7E-09 58.0 0.7 44 345-394 6-49 (52)
53 1ign_A Protein (RAP1); RAP1,ye 96.9 0.0006 2.1E-08 70.3 4.3 45 403-447 8-58 (246)
54 2ebi_A DNA binding protein GT- 96.0 0.0037 1.3E-07 54.4 3.4 45 403-447 4-62 (86)
55 3hm5_A DNA methyltransferase 1 95.6 0.014 4.9E-07 52.2 5.6 44 404-447 31-79 (93)
56 1ug2_A 2610100B20RIK gene prod 94.8 0.039 1.3E-06 49.1 5.7 43 405-447 35-80 (95)
57 2xag_B REST corepressor 1; ami 94.7 0.0053 1.8E-07 69.1 0.0 44 404-447 190-233 (482)
58 1ofc_X ISWI protein; nuclear p 94.7 0.022 7.6E-07 60.8 4.5 45 404-449 111-156 (304)
59 1fex_A TRF2-interacting telome 93.5 0.057 1.9E-06 44.3 3.8 43 404-446 3-55 (59)
60 4iej_A DNA methyltransferase 1 92.7 0.17 5.8E-06 45.3 5.8 45 403-447 30-79 (93)
61 2aqe_A Transcriptional adaptor 91.2 0.25 8.6E-06 43.8 5.2 70 191-269 19-88 (90)
62 2lr8_A CAsp8-associated protei 90.2 0.045 1.5E-06 46.3 0.0 42 405-447 16-60 (70)
63 2cuj_A Transcriptional adaptor 90.5 0.35 1.2E-05 44.3 5.6 70 191-269 37-106 (108)
64 2elj_A Transcriptional adapter 90.3 0.34 1.1E-05 42.8 5.2 70 191-268 19-88 (88)
65 2xb0_X Chromo domain-containin 89.4 0.32 1.1E-05 51.2 5.0 31 402-432 167-198 (270)
66 4b4c_A Chromodomain-helicase-D 88.0 0.37 1.3E-05 47.9 4.3 30 403-432 134-164 (211)
67 4b4c_A Chromodomain-helicase-D 87.0 0.69 2.3E-05 46.0 5.5 39 404-442 8-51 (211)
68 1irz_A ARR10-B; helix-turn-hel 83.1 2.1 7.3E-05 35.7 5.8 43 403-445 7-54 (64)
69 2y9y_A Imitation switch protei 79.9 1.4 4.7E-05 48.3 4.6 43 404-447 124-168 (374)
70 1ofc_X ISWI protein; nuclear p 76.5 2.1 7.1E-05 45.7 4.6 45 403-447 212-272 (304)
71 2d8v_A Zinc finger FYVE domain 61.9 8.9 0.0003 32.3 4.4 46 345-393 8-53 (67)
72 1f5n_A Interferon-induced guan 56.1 76 0.0026 36.6 12.5 56 604-662 506-561 (592)
73 2heo_A Z-DNA binding protein 1 52.1 14 0.00048 30.1 4.1 54 215-270 4-57 (67)
74 3ny3_A E3 ubiquitin-protein li 51.9 7.2 0.00025 33.4 2.3 39 351-393 7-50 (75)
75 3nis_A E3 ubiquitin-protein li 51.2 8.6 0.00029 33.5 2.7 40 350-393 10-54 (82)
76 2y9y_A Imitation switch protei 46.2 21 0.00071 39.1 5.4 45 403-447 228-288 (374)
77 3q8t_A Beclin-1; autophagy, AT 44.2 1.7E+02 0.0058 25.9 12.4 48 613-660 35-82 (96)
78 2fu4_A Ferric uptake regulatio 43.1 15 0.00053 30.3 3.0 50 222-271 18-71 (83)
79 1v5n_A PDI-like hypothetical p 42.3 15 0.0005 32.2 2.9 31 345-376 47-77 (89)
80 4ham_A LMO2241 protein; struct 41.0 41 0.0014 30.7 5.9 57 213-271 11-71 (134)
81 3tqn_A Transcriptional regulat 37.5 39 0.0013 30.0 5.0 56 214-271 10-66 (113)
82 1mzb_A Ferric uptake regulatio 37.3 33 0.0011 31.5 4.6 49 222-270 19-71 (136)
83 1weo_A Cellulose synthase, cat 35.8 21 0.00071 31.8 2.7 31 345-376 16-51 (93)
84 3kyp_A Pfnaps, nucleosome asse 35.5 55 0.0019 32.4 6.1 38 619-659 5-46 (193)
85 3e7l_A Transcriptional regulat 34.4 33 0.0011 27.4 3.6 27 408-434 18-44 (63)
86 2o03_A Probable zinc uptake re 33.6 66 0.0023 29.2 6.0 53 218-271 8-64 (131)
87 3by6_A Predicted transcription 33.6 58 0.002 29.6 5.6 55 214-270 12-67 (126)
88 2ek5_A Predicted transcription 33.1 38 0.0013 31.1 4.2 54 215-270 6-60 (129)
89 2olm_A Nucleoporin-like protei 32.7 42 0.0015 31.8 4.6 57 345-415 25-81 (140)
90 2w57_A Ferric uptake regulatio 32.6 34 0.0012 32.1 3.9 49 222-270 18-70 (150)
91 2qdq_A Talin-1; dimerisation d 30.3 93 0.0032 24.8 5.3 32 627-659 9-40 (50)
92 2htj_A P fimbrial regulatory p 30.0 59 0.002 26.8 4.6 46 223-271 2-47 (81)
93 3oja_B Anopheles plasmodium-re 29.8 2E+02 0.0069 32.0 10.3 29 631-659 548-576 (597)
94 2xig_A Ferric uptake regulatio 29.2 54 0.0019 30.6 4.7 50 220-270 26-79 (150)
95 3ic7_A Putative transcriptiona 27.2 37 0.0013 30.8 3.1 57 213-271 11-68 (126)
96 3efg_A Protein SLYX homolog; x 26.9 2E+02 0.0067 24.6 7.3 48 614-664 11-60 (78)
97 2jee_A YIIU; FTSZ, septum, coi 25.7 2.1E+02 0.0072 24.9 7.3 43 619-661 8-50 (81)
98 1gmj_A ATPase inhibitor; coile 24.1 3.6E+02 0.012 23.6 9.2 53 592-648 27-79 (84)
99 2fe3_A Peroxide operon regulat 23.8 76 0.0026 29.4 4.6 49 222-271 23-75 (145)
100 2crr_A Stromal membrane-associ 23.2 55 0.0019 31.1 3.5 95 344-455 28-129 (141)
101 3c7j_A Transcriptional regulat 21.4 45 0.0015 33.4 2.7 57 213-271 26-82 (237)
102 2p57_A GTPase-activating prote 21.0 75 0.0026 30.4 3.9 60 343-414 35-94 (144)
103 3neu_A LIN1836 protein; struct 20.6 83 0.0029 28.4 4.1 57 213-271 13-70 (125)
104 2v4h_A NF-kappa-B essential mo 20.2 5E+02 0.017 23.7 9.3 13 632-644 74-86 (110)
105 2owa_A Arfgap-like finger doma 20.1 82 0.0028 29.8 3.9 59 343-414 34-92 (138)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=5.9e-42 Score=311.60 Aligned_cols=96 Identities=34% Similarity=0.685 Sum_probs=84.3
Q ss_pred ceeeCCCCCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHH
Q 004134 179 RVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRI 258 (772)
Q Consensus 179 ~~ivIPsys~WF~~~~Ih~iEk~~lPEFF~gks~~ktpe~Y~~~RN~iI~~yr~NP~eyLTvTacRRnL~G~dv~sI~RV 258 (772)
|+=.-|+|+.||+|++||+|||++|||||+|++++|||++||+|||+||++||+||.+|||+|+||++|+| |+++|+||
T Consensus 9 ~~~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~g-Dv~~i~RV 87 (104)
T 2fq3_A 9 HHGMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSG-DAAALFRL 87 (104)
T ss_dssp --------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCS-CHHHHHHH
T ss_pred cCCCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccc-cHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999 69999999
Q ss_pred HHhhhhhcccccccCCC
Q 004134 259 FRFLNHWGIINYCAAVQ 275 (772)
Q Consensus 259 H~FLE~WGLINYqvdp~ 275 (772)
|+|||+||||||||||+
T Consensus 88 h~FLe~wGLIN~~v~~~ 104 (104)
T 2fq3_A 88 HKFLTKWGLINYQVDSK 104 (104)
T ss_dssp HHHHHHTTSSSSCC---
T ss_pred HHHHHHcCeeccCCCCC
Confidence 99999999999999984
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=307.05 Aligned_cols=96 Identities=24% Similarity=0.370 Sum_probs=92.5
Q ss_pred ceeeCCCCCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhcc--CCCChhHHH
Q 004134 179 RVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLV--DGVSPEDLT 256 (772)
Q Consensus 179 ~~ivIPsys~WF~~~~Ih~iEk~~lPEFF~gks~~ktpe~Y~~~RN~iI~~yr~NP~eyLTvTacRRnL--~G~dv~sI~ 256 (772)
.+++||+|+.||++++||+|||++|||||+|+ ++|||++||+|||+||++||+||.+|||+|+|||+| +| |+++|+
T Consensus 11 ~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~g-Dv~~i~ 88 (111)
T 2dce_A 11 EELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCG-DVNCIG 88 (111)
T ss_dssp CSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSS-CHHHHH
T ss_pred cCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhccccc-CHHHHH
Confidence 57999999999999999999999999999998 899999999999999999999999999999999999 58 699999
Q ss_pred HHHHhhhhhcccccccCCCC
Q 004134 257 RIFRFLNHWGIINYCAAVQS 276 (772)
Q Consensus 257 RVH~FLE~WGLINYqvdp~~ 276 (772)
|||+|||+||||||||++.+
T Consensus 89 RVh~FLe~wGLIN~~~~~~~ 108 (111)
T 2dce_A 89 RIHTYLELIGAINFGCEQAV 108 (111)
T ss_dssp HHHHHHHHHSSSSCSCTTSS
T ss_pred HHHHHHHHcCeeecCCChhh
Confidence 99999999999999999865
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.56 E-value=6.5e-15 Score=128.23 Aligned_cols=56 Identities=55% Similarity=1.147 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhCCCCCCCcccC
Q 004134 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRLPMEDGILENV 457 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqLPIED~fLe~~ 457 (772)
....||.+|+.+||+||++||++|.+||++||+||+.||+.||+++||+|+|+.+.
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~ 72 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENS 72 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCC
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcccccccccC
Confidence 45789999999999999999999999999999999999999999999999998753
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.28 E-value=4.7e-12 Score=103.81 Aligned_cols=49 Identities=31% Similarity=0.681 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhC-CCCHHHHHHHHHhCCCC
Q 004134 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRLPME 450 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-~NW~~IAehVG-tKT~eECi~hFlqLPIE 450 (772)
....||.+|+.+||++|++|| +||.+||++|+ +||+.||..||.+++|.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 356899999999999999999 99999999999 99999999999999873
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.17 E-value=4.1e-11 Score=98.68 Aligned_cols=51 Identities=27% Similarity=0.588 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhCCCCC
Q 004134 401 IDGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPMED 451 (772)
Q Consensus 401 ~~~~~WT~qEellLLEaIe~yg-~NW~~IAehVGtKT~eECi~hFlqLPIED 451 (772)
.....||.+|+.+||++|++|| ++|.+||++|++||+.||..||.++.+..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 3457899999999999999999 89999999999999999999999987754
No 6
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.94 E-value=1e-09 Score=94.25 Aligned_cols=47 Identities=21% Similarity=0.483 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcC----CCHHHHHHHhCCCCHHHHHHHHHhCC
Q 004134 402 DGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLP 448 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg----~NW~~IAehVGtKT~eECi~hFlqLP 448 (772)
....||.+|+.+|.+||..|+ ++|++||++||+||++||+.||..|+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 356899999999999999997 67999999999999999999999984
No 7
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.93 E-value=6.3e-10 Score=95.52 Aligned_cols=51 Identities=31% Similarity=0.595 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC----CCHHHHHHHhCCCCHHHHHHHHHhCCCCCC
Q 004134 401 IDGETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPMEDG 452 (772)
Q Consensus 401 ~~~~~WT~qEellLLEaIe~yg----~NW~~IAehVGtKT~eECi~hFlqLPIED~ 452 (772)
.....||.+|+.+|++||.+|| ++|.+||++|++||..||+.||..| ++|.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d~ 70 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSGP 70 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSSC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHcc
Confidence 3467899999999999999998 7899999999999999999999977 5554
No 8
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.5e-09 Score=91.48 Aligned_cols=46 Identities=17% Similarity=0.376 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcC------CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYN------DNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg------~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~ 58 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKY 58 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456899999999999999999 7999999999999999999999755
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.80 E-value=4.7e-09 Score=83.58 Aligned_cols=45 Identities=20% Similarity=0.462 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-CHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYND-NWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg~-NW~~IAehVGtKT~eECi~hFlqL 447 (772)
...||.+|+.+|+++|++||. +|..||++|++||..||..||..+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 357999999999999999995 999999999999999999999764
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.79 E-value=9.8e-09 Score=84.16 Aligned_cols=46 Identities=20% Similarity=0.540 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
....||.+|+.+|+++|++|| .+|..||++|++||..||..||..+
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 456899999999999999999 6999999999999999999999864
No 11
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.78 E-value=8.2e-09 Score=87.81 Aligned_cols=47 Identities=15% Similarity=0.308 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 401 ~~~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
.....||.+|+.+||+++++||.+|..||++|++||..||..||..+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQY 53 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999998765
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.77 E-value=7.8e-09 Score=82.41 Aligned_cols=45 Identities=22% Similarity=0.501 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg-~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
...||.+|+.+|+++|++|| .+|..||++|++||..||..||..+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35799999999999999999 5899999999999999999999864
No 13
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.75 E-value=1.1e-08 Score=82.08 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHHHhC--CCCHHHHHHHHHhC
Q 004134 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (772)
Q Consensus 404 ~~WT~qEellLLEaIe~yg-~NW~~IAehVG--tKT~eECi~hFlqL 447 (772)
..||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5799999999999999999 89999999999 99999999999864
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=2.2e-08 Score=84.64 Aligned_cols=46 Identities=26% Similarity=0.567 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
....||.+|+.+|+++|++|| ++|..||.+|++||..||..||..+
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 346899999999999999999 8999999999999999999999874
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.61 E-value=4.6e-08 Score=81.80 Aligned_cols=45 Identities=16% Similarity=0.440 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhC--CCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg-~NW~~IAehVG--tKT~eECi~hFlqL 447 (772)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..|
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 45799999999999999999 79999999987 89999999999754
No 16
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=5.4e-08 Score=80.47 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHh
Q 004134 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 446 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlq 446 (772)
...||.+|..+|++++.+||.+|..||.+|++||..||+.+|..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999864
No 17
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.60 E-value=4.7e-08 Score=82.42 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhC--CCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVS--TKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-~NW~~IAehVG--tKT~eECi~hFlqL 447 (772)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..+
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 346899999999999999999 89999999999 99999999999865
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=6.9e-08 Score=80.61 Aligned_cols=45 Identities=29% Similarity=0.544 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
....||.+|+.+|+++++.||.+|..||+.+| ||..||..||..+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~~ 52 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFL 52 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHHH
Confidence 45689999999999999999999999999665 9999999999875
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.56 E-value=5.1e-08 Score=87.38 Aligned_cols=45 Identities=24% Similarity=0.579 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg----~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
...||.+|+.+|++||.+|+ +.|.+||++|++||.+||+.||..|
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46899999999999999996 6799999999999999999999886
No 20
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.87 E-value=1.6e-08 Score=89.65 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 401 ~~~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
.....||.+|+.+||+++++||.+|..||++|++||..||..||..+
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 34568999999999999999999999999999999999999999854
No 21
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.44 E-value=2e-07 Score=95.00 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
....||++|..++++|+.+||.||..||++||+||..||+.||..+
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 177 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999744
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.39 E-value=4.6e-07 Score=77.79 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
....||.+|+.+|++++++||..|..||+++ +||..+|..+|..|
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999 99999999999865
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.34 E-value=4.2e-07 Score=82.63 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 404 ~~WT~qEellLLEaIe~yg-~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
..||.+|+.+|+++|+.|| ++|..||++|++||+.||..+|..+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHH
Confidence 3699999999999999999 5999999999999999999999863
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.34 E-value=4.6e-07 Score=81.70 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg-~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
...||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 46799999999999999999 5899999999999999999999874
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.32 E-value=6.9e-07 Score=81.16 Aligned_cols=45 Identities=22% Similarity=0.508 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
...||.+|+.+||+++..||.+|..||++|++||..+|..||..|
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999864
No 26
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=1.1e-06 Score=73.30 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCHHHHHHH-hCCCCHHHHHHHHH
Q 004134 401 IDGETWSDQETFLLLEGIEMYNDNWNEIAEH-VSTKSKAQCILHFV 445 (772)
Q Consensus 401 ~~~~~WT~qEellLLEaIe~yg~NW~~IAeh-VGtKT~eECi~hFl 445 (772)
.....||++|..++++||.+||-||..|+.+ |++||..||+.+|.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 3457899999999999999999999999997 99999999999986
No 27
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.30 E-value=5.1e-07 Score=84.42 Aligned_cols=45 Identities=16% Similarity=0.360 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
...||.+|+.+|+++|++||.+|..||++|++||..||..||..+
T Consensus 11 k~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 11 KQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNY 55 (126)
T ss_dssp SCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhh
Confidence 467999999999999999999999999999999999999999864
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.28 E-value=6.2e-07 Score=80.86 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
....||.+|+.+|++++..||.+|..||++|++||..+|..||..+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999754
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.26 E-value=1.3e-06 Score=81.73 Aligned_cols=46 Identities=22% Similarity=0.562 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNH 72 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHh
Confidence 346899999999999999999 5899999999999999999999873
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.26 E-value=7e-07 Score=83.44 Aligned_cols=45 Identities=22% Similarity=0.496 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
...||.+|+.+||+++..||.+|..||++|++||..+|..||..|
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999864
No 31
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.23 E-value=1.2e-06 Score=77.04 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHhcC-CCHHHHHHH----hCCCCHHHHHHHHHhC
Q 004134 405 TWSDQETFLLLEGIEMYN-DNWNEIAEH----VSTKSKAQCILHFVRL 447 (772)
Q Consensus 405 ~WT~qEellLLEaIe~yg-~NW~~IAeh----VGtKT~eECi~hFlqL 447 (772)
.||.+|+..|++||++|| |+|.+|+++ +.+||..+|..||..+
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 699999999999999999 699999997 7899999999999875
No 32
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.23 E-value=1.4e-06 Score=74.52 Aligned_cols=48 Identities=15% Similarity=0.372 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CCHHHHHHHhCCCCHHHHHHHHHhCCCCCC
Q 004134 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFVRLPMEDG 452 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg----~NW~~IAehVGtKT~eECi~hFlqLPIED~ 452 (772)
...||.+|..+|..||.+|+ +.|++||+++| ||.+||+.||-.| .+|.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg-Rt~~eV~~~y~~L-~~d~ 59 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQL-KDSV 59 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHH-HHSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC-CCHHHHHHHHHHH-HHhc
Confidence 46799999999999999997 56999999995 9999999999988 6664
No 33
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.21 E-value=1.1e-06 Score=98.40 Aligned_cols=46 Identities=24% Similarity=0.479 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
....||.+|.+++|+||.+||-||..||++|||||..||+.||..+
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999753
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.19 E-value=1.6e-06 Score=80.98 Aligned_cols=46 Identities=15% Similarity=0.426 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
....||.+|+.+||+++..||.+|..||++|++||..+|..||..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999865
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.16 E-value=6.8e-07 Score=84.02 Aligned_cols=44 Identities=20% Similarity=0.402 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 404 ~~WT~qEellLLEaIe~yg-~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
..||.+|+.+|+++|+.|| +||..||++|++||..||..||..+
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNH 47 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhc
Confidence 4699999999999999999 8999999999999999999999874
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.14 E-value=2e-06 Score=80.79 Aligned_cols=45 Identities=11% Similarity=0.271 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
...||.+|+.+||+++..||.+|..||++|++||..+|..||..+
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSS 98 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 457999999999999999999999999999999999999999875
No 37
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.13 E-value=1.3e-06 Score=101.32 Aligned_cols=87 Identities=21% Similarity=0.398 Sum_probs=73.1
Q ss_pred CCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHh----hccCCCChhHHHHHHHh
Q 004134 186 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQ----GLVDGVSPEDLTRIFRF 261 (772)
Q Consensus 186 ys~WF~~~~Ih~iEk~~lPEFF~gks~~ktpe~Y~~~RN~iI~~yr~NP~eyLTvTacR----RnL~G~dv~sI~RVH~F 261 (772)
+++-|+.+.+|+.|+.+|||+-.+ +..+...|+.|||.|+.+|+.||..+||+..|- |-+.. |...|.+|++|
T Consensus 8 ~~~~l~~~~l~~~E~~~~~~~~~~--~~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~-~~~~i~~~~~~ 84 (662)
T 2z3y_A 8 FQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSY 84 (662)
T ss_dssp HHTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGG-CHHHHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHhHHHHcC--chHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccC-ChHHHHHHHHH
Confidence 467799999999999999999864 233567999999999999999999999999983 33333 46789999999
Q ss_pred hhhhcccccccCCC
Q 004134 262 LNHWGIINYCAAVQ 275 (772)
Q Consensus 262 LE~WGLINYqvdp~ 275 (772)
+..||+||+.+.+.
T Consensus 85 ~~~~~~~~~~~~~~ 98 (662)
T 2z3y_A 85 LERHGLINFGIYKR 98 (662)
T ss_dssp HHHTTSSSCSSCBC
T ss_pred HHHHHHHhcCCccc
Confidence 99999999877653
No 38
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.13 E-value=4.2e-06 Score=99.36 Aligned_cols=90 Identities=23% Similarity=0.322 Sum_probs=73.9
Q ss_pred CceeeCCCCCCCCCC------------CCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhh
Q 004134 178 SRVHVLPMHSDWFSP------------DTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQG 245 (772)
Q Consensus 178 t~~ivIPsys~WF~~------------~~Ih~iEk~~lPEFF~gks~~ktpe~Y~~~RN~iI~~yr~NP~eyLTvTacRR 245 (772)
.+...+..|-.||-. +.++..|+.+||||..+ +..|+.|||.|+.+|+.||...||...|.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~~------~~~yl~irn~il~~w~~np~~~l~~~~~~~ 287 (776)
T 4gut_A 214 VHVPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRD------PTMYLALRNLILALWYTNCKEALTPQKCIP 287 (776)
T ss_dssp ----CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSSC------CHHHHHHHHHHHHHHHHCTTSCCCHHHHGG
T ss_pred ccccccccccccccCCCccccchhcCCCcCChHHHHhChHHHhc------CceeeeehHHHHHHHHHCCceeeeHHHhhh
Confidence 345677889999966 99999999999999754 579999999999999999999999999986
Q ss_pred ccC--CC----ChhHHHHHHHhhhhhcccccccC
Q 004134 246 LVD--GV----SPEDLTRIFRFLNHWGIINYCAA 273 (772)
Q Consensus 246 nL~--G~----dv~sI~RVH~FLE~WGLINYqvd 273 (772)
.+. +. .+..|.+|++||..+|+||+.+-
T Consensus 288 ~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 321 (776)
T 4gut_A 288 HIIVRGLVRIRCVQEVERILYFMTRKGLINTGVL 321 (776)
T ss_dssp GCCCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTC
T ss_pred hcccccccccccHHHHHHHHHHHHHhhhhhcccc
Confidence 542 11 13557999999999999999764
No 39
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.06 E-value=4.5e-06 Score=70.95 Aligned_cols=44 Identities=30% Similarity=0.467 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHH-hCCCCHHHHHHHHHh
Q 004134 403 GETWSDQETFLLLEGIEMYNDNWNEIAEH-VSTKSKAQCILHFVR 446 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg~NW~~IAeh-VGtKT~eECi~hFlq 446 (772)
...||++|..++++||.+||-||..|+.+ |++||..||+.+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 36799999999999999999999999995 999999999999974
No 40
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.02 E-value=3.8e-06 Score=70.11 Aligned_cols=48 Identities=25% Similarity=0.541 Sum_probs=43.8
Q ss_pred CCCCCCCCC-CCcceeeccCCcCcccChhhhccCCCCCCCC-CCCceecC
Q 004134 346 NHCNYCSQP-IPAVYYQSQKEVDVLLCPECFHEGRFVTGHS-SLDYIRVD 393 (772)
Q Consensus 346 ~~C~~C~~~-~~~~~y~c~kc~d~~LC~~CF~~G~~~~~hs-s~DF~rvd 393 (772)
..|+.|+.. +...+|+|..|.+++||..||..|++...|+ +|.|+++.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 679999975 9999999999999999999999999999996 68998875
No 41
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.96 E-value=9.4e-07 Score=75.64 Aligned_cols=43 Identities=21% Similarity=0.492 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CCHHHHHHHhCCCCHHHHHHHHH
Q 004134 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHVSTKSKAQCILHFV 445 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg----~NW~~IAehVGtKT~eECi~hFl 445 (772)
...||.+|..+|-.||.+|. +.|++||+.||+||++||+.||-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 46799999999999999997 57999999999999999999983
No 42
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.93 E-value=9.2e-06 Score=78.45 Aligned_cols=46 Identities=15% Similarity=0.418 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
....||.+|+.+||+++..||..|..||++|++||..+|..||..+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999865
No 43
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.89 E-value=1.2e-05 Score=72.02 Aligned_cols=43 Identities=28% Similarity=0.442 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHh
Q 004134 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVR 446 (772)
Q Consensus 404 ~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlq 446 (772)
..||.+|-.++.+++..||-||..||++|++||..||+.+|..
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999963
No 44
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.89 E-value=1.2e-05 Score=75.22 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCHHHHHHHh----CCCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg-~NW~~IAehV----GtKT~eECi~hFlqL 447 (772)
...||.+|+..|++||++|| |+|.+|+++. ..||..+|..+|..+
T Consensus 31 r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnl 80 (122)
T 2roh_A 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTL 80 (122)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 46899999999999999999 7999999986 689999999999876
No 45
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.88 E-value=1.5e-05 Score=76.93 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
....||.+|+.+|+++++.|| .+|..||++|++||..||..+|..+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 346899999999999999999 5899999999999999999999864
No 46
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.84 E-value=1.1e-05 Score=73.78 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHh----CCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-~NW~~IAehV----GtKT~eECi~hFlqL 447 (772)
....||.+|+..|++||++|| |+|.+|++.. .+||..+|..+|..|
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 356899999999999999999 6999999977 589999999999875
No 47
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.76 E-value=6e-06 Score=74.64 Aligned_cols=54 Identities=30% Similarity=0.615 Sum_probs=44.8
Q ss_pred CCCCCCCC-CCCcceeeccCCcCcccChhhhccCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHH
Q 004134 346 NHCNYCSQ-PIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQE 410 (772)
Q Consensus 346 ~~C~~C~~-~~~~~~y~c~kc~d~~LC~~CF~~G~~~~~hss~DF~rvd~~~~~~~~~~~~WT~qE 410 (772)
..|+.|+. ++...+|+|..|.+++||..||..|. |..|.|+++... ...|+..|
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~----H~~H~f~~i~~~-------~~~w~~~e 86 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC----HLSHTFTFREKR-------NQKWRSLE 86 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS----GGGSCEEECCSS-------SCCCEECC
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC----CCCCCeeEecCC-------CCCCcccc
Confidence 68999996 78889999999999999999999984 678999988653 23576544
No 48
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.76 E-value=1.8e-05 Score=73.99 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHh----CCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV----STKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-~NW~~IAehV----GtKT~eECi~hFlqL 447 (772)
....||.+|+..|+++|++|| |+|.+|+++. ..||..+|..+|..|
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnl 66 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 66 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 356899999999999999999 6999999996 689999999999865
No 49
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=97.67 E-value=2.8e-05 Score=68.11 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=45.3
Q ss_pred CCCCCCCCC-CCCcceeeccCCcC---cccChhhhccCCCCCCCC-CCCceecCCC
Q 004134 345 ENHCNYCSQ-PIPAVYYQSQKEVD---VLLCPECFHEGRFVTGHS-SLDYIRVDPA 395 (772)
Q Consensus 345 ~~~C~~C~~-~~~~~~y~c~kc~d---~~LC~~CF~~G~~~~~hs-s~DF~rvd~~ 395 (772)
...|+.|+. ++...+|+|..|.+ ++||..||..|.+...|. .|.|+++...
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 468999996 78889999999999 999999999999888895 7999988754
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.49 E-value=9.7e-05 Score=61.48 Aligned_cols=46 Identities=17% Similarity=0.391 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCHHHHHH---HhCCCCHHHHHHHHHhC
Q 004134 402 DGETWSDQETFLLLEGIEMYNDNWNEIAE---HVSTKSKAQCILHFVRL 447 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg~NW~~IAe---hVGtKT~eECi~hFlqL 447 (772)
....||.+|+..||+||++||-+|.+|+. ++..||.-....+|-.|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 45789999999999999999999999995 56689999988888764
No 51
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.19 E-value=0.00023 Score=85.37 Aligned_cols=86 Identities=21% Similarity=0.410 Sum_probs=71.6
Q ss_pred CCCCCCCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHH----hhccCCCChhHHHHHHHh
Q 004134 186 HSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDC----QGLVDGVSPEDLTRIFRF 261 (772)
Q Consensus 186 ys~WF~~~~Ih~iEk~~lPEFF~gks~~ktpe~Y~~~RN~iI~~yr~NP~eyLTvTac----RRnL~G~dv~sI~RVH~F 261 (772)
|.+.|+.+.+|..|+.+||++-.. .-....+|+.+||.|+..|+.||...|+..+| +|.+.. |...|.+|++|
T Consensus 179 ~~~r~p~~~~~~~e~~~f~~~~~~--~~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~-~p~~i~~~~~~ 255 (852)
T 2xag_A 179 FQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS-DTVLVHRVHSY 255 (852)
T ss_dssp HTTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTS-CHHHHHHHHHH
T ss_pred HHhcCCCcccChHHHHHHHHHHHh--hhhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccC-CcHHHHHHHHH
Confidence 667899999999999999998643 12246799999999999999999999998776 344444 46789999999
Q ss_pred hhhhcccccccCC
Q 004134 262 LNHWGIINYCAAV 274 (772)
Q Consensus 262 LE~WGLINYqvdp 274 (772)
+..||+||+.+..
T Consensus 256 ~~~~~~~~~~~~~ 268 (852)
T 2xag_A 256 LERHGLINFGIYK 268 (852)
T ss_dssp HHHTTSSSCSSCB
T ss_pred HHHHHHHhcCccc
Confidence 9999999987764
No 52
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=96.94 E-value=0.00017 Score=58.03 Aligned_cols=44 Identities=18% Similarity=0.437 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCCcceeeccCCcCcccChhhhccCCCCCCCCCCCceecCC
Q 004134 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDP 394 (772)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CF~~G~~~~~hss~DF~rvd~ 394 (772)
...|+.|+..+ ..+|+|..|.+++||..||..+. | .|.++++..
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~----H-~H~m~~~~~ 49 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS----H-THKMVKWGL 49 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC----C-CSSEEEECS
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC----C-CCceEEecC
Confidence 36799999986 68999999999999999999874 5 688888753
No 53
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=96.88 E-value=0.0006 Score=70.27 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC------HHHHHHHhCCCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYNDN------WNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg~N------W~~IAehVGtKT~eECi~hFlqL 447 (772)
...||.+|+.+||+.+++||.. |.+||+++.+||..+|..||..+
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY 58 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4689999999999999999853 99999999999999999999874
No 54
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.00 E-value=0.0037 Score=54.39 Aligned_cols=45 Identities=24% Similarity=0.419 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHhcC----------CCHHHHHHHhC----CCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYN----------DNWNEIAEHVS----TKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg----------~NW~~IAehVG----tKT~eECi~hFlqL 447 (772)
...||.+|+++||++..... .-|+.||+.|. .+|++||..+|-.|
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35799999999999997532 37999999986 69999999999876
No 55
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=95.64 E-value=0.014 Score=52.18 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHh-----CCCCHHHHHHHHHhC
Q 004134 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHV-----STKSKAQCILHFVRL 447 (772)
Q Consensus 404 ~~WT~qEellLLEaIe~yg~NW~~IAehV-----GtKT~eECi~hFlqL 447 (772)
.+||.+|+..|++.+++|+-.|--|++.. +.||-++...+|..+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999 479999999999764
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.84 E-value=0.039 Score=49.13 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHhcC---CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 405 TWSDQETFLLLEGIEMYN---DNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 405 ~WT~qEellLLEaIe~yg---~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
-||.+|+..+|.+.++-| +-|..||+.+|+||++|...+|-+|
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 599999999999999987 5999999999999999999999886
No 57
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=94.75 E-value=0.0053 Score=69.14 Aligned_cols=44 Identities=14% Similarity=0.360 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 404 ETWSDQETFLLLEGIEMYNDNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 404 ~~WT~qEellLLEaIe~yg~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
..||.+|..++.+|+..||.||..|+++|++||..+|+.+|...
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~W 233 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSW 233 (482)
T ss_dssp --------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccc
Confidence 47999999999999999999999999999999999999998764
No 58
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.67 E-value=0.022 Score=60.80 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHHHhCCCCHHHHHHHHHhCCC
Q 004134 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVSTKSKAQCILHFVRLPM 449 (772)
Q Consensus 404 ~~WT~qEellLLEaIe~yg-~NW~~IAehVGtKT~eECi~hFlqLPI 449 (772)
.+||..+-..++.|+++|| ++|..||..|++||++|... |.+..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~-Y~~vFw 156 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE-YNAVFW 156 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH-HHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHH-HHHHHH
Confidence 4799999999999999999 89999999999999999954 444433
No 59
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=93.54 E-value=0.057 Score=44.31 Aligned_cols=43 Identities=9% Similarity=0.261 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHhc--------C-CCHHHHHH-HhCCCCHHHHHHHHHh
Q 004134 404 ETWSDQETFLLLEGIEMY--------N-DNWNEIAE-HVSTKSKAQCILHFVR 446 (772)
Q Consensus 404 ~~WT~qEellLLEaIe~y--------g-~NW~~IAe-hVGtKT~eECi~hFlq 446 (772)
..+|.+|+..|++-|..| | --|.++++ .+..+|-+.|..||++
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 469999999999999999 3 36999999 8999999999999987
No 60
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.67 E-value=0.17 Score=45.31 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCHHHHHHHhC-----CCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYNDNWNEIAEHVS-----TKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg~NW~~IAehVG-----tKT~eECi~hFlqL 447 (772)
..+||.+||-.|++.+++|+-.|--|++.-. .||.|+-..+|.++
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999999999874 69999999999764
No 61
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=91.19 E-value=0.25 Score=43.75 Aligned_cols=70 Identities=16% Similarity=0.370 Sum_probs=57.0
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccc
Q 004134 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (772)
Q Consensus 191 ~~~~Ih~iEk~~lPEFF~gks~~ktpe~Y~~~RN~iI~~yr~NP~eyLTvTacRRnL~G~dv~sI~RVH~FLE~WGLIN 269 (772)
+.+-+|+-|++-.-.. .=.|..|+.+...||.-+..+-. |+.++||..+ ..|++-..||+.||.+-|+|+
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~li~E~~~~g~--l~k~da~~~~-kiD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQGG--LRLAQARALI-KIDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHSC--CCHHHHHTTS-SSSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHH-cccHHHHHHHHHHHHHcCCCC
Confidence 4467888898855333 45799999999999998865433 8999999875 557999999999999999995
No 62
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=90.17 E-value=0.045 Score=46.28 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHhcC---CCHHHHHHHhCCCCHHHHHHHHHhC
Q 004134 405 TWSDQETFLLLEGIEMYN---DNWNEIAEHVSTKSKAQCILHFVRL 447 (772)
Q Consensus 405 ~WT~qEellLLEaIe~yg---~NW~~IAehVGtKT~eECi~hFlqL 447 (772)
-||.+|+-.+|...++-| .-|..||+.+ +||++|...+|.+|
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 599999999999999888 4999999999 79999999999886
No 63
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=90.53 E-value=0.35 Score=44.35 Aligned_cols=70 Identities=16% Similarity=0.369 Sum_probs=57.6
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccc
Q 004134 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIIN 269 (772)
Q Consensus 191 ~~~~Ih~iEk~~lPEFF~gks~~ktpe~Y~~~RN~iI~~yr~NP~eyLTvTacRRnL~G~dv~sI~RVH~FLE~WGLIN 269 (772)
+.+-+|+-|++-.-.. .=.|..|+.+.+.||.-+..+- .|+.++||+.+ ..|++-..||+.||.+-|+|+
T Consensus 37 g~~LLs~~E~~LCs~l------rL~P~~YL~iK~~Li~E~~k~g--~lkk~dA~~l~-kID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALI-KIDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHSS--CCCHHHHHHHH-TSCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHh-cccHHHHHHHHHHHHHcCCCC
Confidence 4568899999855433 4579999999999999986543 38999999875 457999999999999999985
No 64
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=90.30 E-value=0.34 Score=42.77 Aligned_cols=70 Identities=17% Similarity=0.353 Sum_probs=57.0
Q ss_pred CCCCCCHHHHhhcCcccCCCCCCCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhccc
Q 004134 191 SPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGII 268 (772)
Q Consensus 191 ~~~~Ih~iEk~~lPEFF~gks~~ktpe~Y~~~RN~iI~~yr~NP~eyLTvTacRRnL~G~dv~sI~RVH~FLE~WGLI 268 (772)
+.+-+|+-|++-.-.. .=.|..|+.+.+.||.-+..+ ...|+.++||+.+ ..|++-..||+.||.+-|.|
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~-kiD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL------KILPKPYLVLKEVMFRELLKT-GGNLSKSACRELL-NIDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHT-TSCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHH-cccHHHHHHHHHHHHHcCCC
Confidence 4567888898855333 457999999999999988654 4468899999875 56799999999999999987
No 65
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.37 E-value=0.32 Score=51.18 Aligned_cols=31 Identities=26% Similarity=0.553 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-CCHHHHHHHh
Q 004134 402 DGETWSDQETFLLLEGIEMYN-DNWNEIAEHV 432 (772)
Q Consensus 402 ~~~~WT~qEellLLEaIe~yg-~NW~~IAehV 432 (772)
..-.|+.+|+..||-||.+|| |+|+.|..--
T Consensus 167 W~c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 167 WSSNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CCCCcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 457899999999999999999 9999997643
No 66
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=88.03 E-value=0.37 Score=47.92 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHhcC-CCHHHHHHHh
Q 004134 403 GETWSDQETFLLLEGIEMYN-DNWNEIAEHV 432 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg-~NW~~IAehV 432 (772)
...||.+|+..||-||.+|| |+|+.|-.-.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 45799999999999999999 9999887643
No 67
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=87.04 E-value=0.69 Score=45.96 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHhcC---CCHHHHHHHhC--CCCHHHHHH
Q 004134 404 ETWSDQETFLLLEGIEMYN---DNWNEIAEHVS--TKSKAQCIL 442 (772)
Q Consensus 404 ~~WT~qEellLLEaIe~yg---~NW~~IAehVG--tKT~eECi~ 442 (772)
.+||..|...|+-|+.+|| +.|++|++... .||.++...
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH
Confidence 5899999999999999999 78999999864 799887765
No 68
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=83.09 E-value=2.1 Score=35.74 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCC---HHHHHHHhC--CCCHHHHHHHHH
Q 004134 403 GETWSDQETFLLLEGIEMYNDN---WNEIAEHVS--TKSKAQCILHFV 445 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg~N---W~~IAehVG--tKT~eECi~hFl 445 (772)
.-.||.+.-..+++||+..|.+ |..|-+.|+ +-|.+++..|.=
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 3579999999999999999965 889999998 469999988853
No 69
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=79.89 E-value=1.4 Score=48.29 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCHHHHHHHhC-CCCHHHHHHHHHhC
Q 004134 404 ETWSDQETFLLLEGIEMYN-DNWNEIAEHVS-TKSKAQCILHFVRL 447 (772)
Q Consensus 404 ~~WT~qEellLLEaIe~yg-~NW~~IAehVG-tKT~eECi~hFlqL 447 (772)
.+||..|-..++-|.++|| +|-..||..|+ +||++|.. .|.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~v 168 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKA 168 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHH
Confidence 4799999999999999999 89999999998 99999987 44443
No 70
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=76.53 E-value=2.1 Score=45.74 Aligned_cols=45 Identities=11% Similarity=0.254 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CCHHHHHH------------HhCCCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYN----DNWNEIAE------------HVSTKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg----~NW~~IAe------------hVGtKT~eECi~hFlqL 447 (772)
+..||.+|+-.||-+|.+|| |+|+.|.. ++-+||+.|+..|--.|
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 46899999999999999998 89999984 55689999988886555
No 71
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=61.91 E-value=8.9 Score=32.28 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCcceeeccCCcCcccChhhhccCCCCCCCCCCCceecC
Q 004134 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVD 393 (772)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CF~~G~~~~~hss~DF~rvd 393 (772)
.+.|..|..+. .++|..|.+-..|..||.++..--..+.|..++..
T Consensus 8 ~pWC~ICneDA---tlrC~gCdgDLYC~rC~rE~H~~~d~r~Hk~v~y~ 53 (67)
T 2d8v_A 8 LPWCCICNEDA---TLRCAGCDGDLYCARCFREGHDNFDLKEHQTSPYH 53 (67)
T ss_dssp CSSCTTTCSCC---CEEETTTTSEEECSSHHHHHTTTSSTTTCCEECCC
T ss_pred CCeeEEeCCCC---eEEecCCCCceehHHHHHHHccchhhhccceeecc
Confidence 36899999884 48999997778999999887743333444444443
No 72
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=56.13 E-value=76 Score=36.63 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004134 604 EREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTRL 662 (772)
Q Consensus 604 ErEIqrLv~~iIe~QLKKLElKLk~feeLE~~Le~Ere~LE~~Rq~L~~eRl~~~~~rl 662 (772)
.+|.++-....++.|-+-.+..++++.+ -|++||+++.++.+..+..++..-...|
T Consensus 506 l~~~~~~~~~~~~~~~~~~~e~~~ql~~---kme~~~~~~~~e~~~~~~~~~~~~~~~~ 561 (592)
T 1f5n_A 506 LHEMQRKNEQMMEQKERSYQEHLKQLTE---KMENDRVQLLKEQERTLALKLQEQEQLL 561 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677777777776666555 7889999888888888887777644433
No 73
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=52.06 E-value=14 Score=30.15 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 004134 215 TPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270 (772)
Q Consensus 215 tpe~Y~~~RN~iI~~yr~NP~eyLTvTacRRnL~G~dv~sI~RVH~FLE~WGLINY 270 (772)
.|+.-.+.|..|++....+ ..++|+++--+.+ |..-.++.|+.+=|+..|+|-.
T Consensus 4 ~~~~m~~~~~~IL~~L~~~-~~~~s~~eLA~~l-glsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 4 MLSTGDNLEQKILQVLSDD-GGPVAIFQLVKKC-QVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp -----CHHHHHHHHHHHHH-CSCEEHHHHHHHH-CSCHHHHHHHHHHHHHTTSEEE
T ss_pred CcccccHHHHHHHHHHHHc-CCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEec
Confidence 3444445788999998764 3579999976655 5668899999999999999853
No 74
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=51.87 E-value=7.2 Score=33.41 Aligned_cols=39 Identities=23% Similarity=0.458 Sum_probs=26.7
Q ss_pred CCCCCC--cceeeccCCc---CcccChhhhccCCCCCCCCCCCceecC
Q 004134 351 CSQPIP--AVYYQSQKEV---DVLLCPECFHEGRFVTGHSSLDYIRVD 393 (772)
Q Consensus 351 C~~~~~--~~~y~c~kc~---d~~LC~~CF~~G~~~~~hss~DF~rvd 393 (772)
|+.... .+.|+|..|. ...||.+||..+ .|..|+|.+..
T Consensus 7 Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~----~H~gH~~~~~~ 50 (75)
T 3ny3_A 7 CGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGS----IHRDHRYRMTT 50 (75)
T ss_dssp CCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTS----GGGGSCEEEEE
T ss_pred cCCcccCCCEEEECccCCCCCCeeEChHHCCCC----CcCCceEEEEE
Confidence 444443 3567776653 357999999875 57889988754
No 75
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=51.21 E-value=8.6 Score=33.50 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=27.7
Q ss_pred CCCCCCC--cceeeccCCc---CcccChhhhccCCCCCCCCCCCceecC
Q 004134 350 YCSQPIP--AVYYQSQKEV---DVLLCPECFHEGRFVTGHSSLDYIRVD 393 (772)
Q Consensus 350 ~C~~~~~--~~~y~c~kc~---d~~LC~~CF~~G~~~~~hss~DF~rvd 393 (772)
.|+.... .+.|+|..|. ...||.+||..+ .|..|+|.+..
T Consensus 10 ~Cg~vf~~ge~~Y~C~~C~~d~tcvlC~~CF~~s----~H~gH~~~~~~ 54 (82)
T 3nis_A 10 NCGRKFKIGEPLYRCHECGCDDTCVLCIHCFNPK----DHVNHHVCTDI 54 (82)
T ss_dssp CCCCBCCTTCEEEEETTTBSSTTCCBCTTTCCGG----GGTTSCEEEEE
T ss_pred CCCCcccCCCEEEEeeccCCCCCceEchhhCCCC----CcCCceEEEEE
Confidence 3555554 3677777663 467999999764 58889998753
No 76
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=46.20 E-value=21 Score=39.14 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHhcC----CCHHHHHHHh------------CCCCHHHHHHHHHhC
Q 004134 403 GETWSDQETFLLLEGIEMYN----DNWNEIAEHV------------STKSKAQCILHFVRL 447 (772)
Q Consensus 403 ~~~WT~qEellLLEaIe~yg----~NW~~IAehV------------GtKT~eECi~hFlqL 447 (772)
+..||.+|+-.||=+|.+|| |+|+.|-..| .+||+.|+..|.-.|
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tL 288 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTL 288 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 46799999999999999998 8999997764 479999988876555
No 77
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=44.16 E-value=1.7e+02 Score=25.87 Aligned_cols=48 Identities=10% Similarity=0.298 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004134 613 NIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVST 660 (772)
Q Consensus 613 ~iIe~QLKKLElKLk~feeLE~~Le~Ere~LE~~Rq~L~~eRl~~~~~ 660 (772)
..|+.+|+.++..+..++.-|..+.+|+..+.++.-.+..+|.++-.+
T Consensus 35 ~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q 82 (96)
T 3q8t_A 35 KVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQ 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999999988887654
No 78
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=43.11 E-value=15 Score=30.35 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhcccccc
Q 004134 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (772)
Q Consensus 222 ~RN~iI~~yr~NP~eyLTvTacRRnL----~G~dv~sI~RVH~FLE~WGLINYq 271 (772)
-|-.|++....++...+|+.+.-..+ .+.+..+|.|....|+..|||--.
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 45678877655432679999864443 255678999999999999999753
No 79
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=42.33 E-value=15 Score=32.15 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCCcceeeccCCcCcccChhhhc
Q 004134 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFH 376 (772)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CF~ 376 (772)
.+.|+.|+......+|+|..| +|.|-..|..
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C-~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDEC-DFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTT-CCCCCHHHHH
T ss_pred CeEeCCCCCcCCCcEEEcCCC-CCeEcHHhcC
Confidence 468999999988889999998 7999999974
No 80
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=40.98 E-value=41 Score=30.66 Aligned_cols=57 Identities=12% Similarity=0.322 Sum_probs=42.8
Q ss_pred CCCh---HHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 004134 213 DHTP---EKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (772)
Q Consensus 213 ~ktp---e~Y~~~RN~iI~~yr~NP~eyL-TvTacRRnL~G~dv~sI~RVH~FLE~WGLINYq 271 (772)
+++| ++|-.+|+.|++- ...|..+| |..+.-..+ |+....+.+...-|+.-|||-..
T Consensus 11 s~~PlY~QI~~~i~~~I~~G-~l~pG~~LPser~La~~~-gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 11 SQLPIYEQIVQKIKEQVVKG-VLQEGEKILSIREFASRI-GVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp SSSCHHHHHHHHHHHHHHHT-SSCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcC-CCCCCCCCccHHHHHHHH-CCCHHHHHHHHHHHHHCCcEEEE
Confidence 5555 6677777777765 46799999 786643333 55678999999999999999764
No 81
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=37.46 E-value=39 Score=30.00 Aligned_cols=56 Identities=7% Similarity=0.013 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 004134 214 HTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (772)
Q Consensus 214 ktpe~Y~~~RN~iI~~yr~NP~eyL-TvTacRRnL~G~dv~sI~RVH~FLE~WGLINYq 271 (772)
..-++|-.+|..|++- ...|...| |..+.-+.+ |+....+.+...-|+..|||-..
T Consensus 10 ~~~~i~~~i~~~I~~g-~~~~G~~lPs~~~La~~~-~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 10 IYQQLRDKIVEAIIDG-SYVEGEMIPSIRKISTEY-QINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp HHHHHHHHHHHHHHHT-SSCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHcC-CCCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 3356777788777764 35789999 887754433 44578999999999999999653
No 82
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.28 E-value=33 Score=31.48 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 004134 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (772)
Q Consensus 222 ~RN~iI~~yr~NP~eyLTvTacRRnL----~G~dv~sI~RVH~FLE~WGLINY 270 (772)
-|-.|++....++...+|+.+.-..| .+.+..+|.|...+|+..|||.-
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 46788888776543789999874433 35568899999999999999974
No 83
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=35.81 E-value=21 Score=31.79 Aligned_cols=31 Identities=16% Similarity=0.578 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCc-----ceeeccCCcCcccChhhhc
Q 004134 345 ENHCNYCSQPIPA-----VYYQSQKEVDVLLCPECFH 376 (772)
Q Consensus 345 ~~~C~~C~~~~~~-----~~y~c~kc~d~~LC~~CF~ 376 (772)
...|..|+.++.. ++..|.+| .|-+|-.||.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC-~FPvCrpCyE 51 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNEC-GFPACRPCYE 51 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSS-CCCCCHHHHH
T ss_pred CCccccccCccccCCCCCEEEeeecc-CChhhHHHHH
Confidence 4579999988753 78899998 5889999995
No 84
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}
Probab=35.51 E-value=55 Score=32.42 Aligned_cols=38 Identities=8% Similarity=0.287 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 004134 619 LKRLELKLKQFAEVETLLMRECEQVE----KARQRFATERTRIVS 659 (772)
Q Consensus 619 LKKLElKLk~feeLE~~Le~Ere~LE----~~Rq~L~~eRl~~~~ 659 (772)
|+.|+.++ ++||.-+.+|..+|| +.++-|+..|..+++
T Consensus 5 L~~iQ~e~---~~l~~~~~~e~~~le~ky~~~~~p~y~kR~~iI~ 46 (193)
T 3kyp_A 5 FEDIQKDI---EQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQ 46 (193)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 44555443 344445555555554 457889999999998
No 85
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=34.37 E-value=33 Score=27.45 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHhCC
Q 004134 408 DQETFLLLEGIEMYNDNWNEIAEHVST 434 (772)
Q Consensus 408 ~qEellLLEaIe~yg~NW~~IAehVGt 434 (772)
.-|...+.++++.++||+.++|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 457788999999999999999999994
No 86
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.63 E-value=66 Score=29.19 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhcccccc
Q 004134 218 KYMECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (772)
Q Consensus 218 ~Y~~~RN~iI~~yr~NP~eyLTvTacRRnL----~G~dv~sI~RVH~FLE~WGLINYq 271 (772)
+.-.-|-.|++..... ...+|+.+.-..| .+.+..++.|...+|+..|||.=-
T Consensus 8 r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 8 RSTRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEE
Confidence 3455688899888764 6689999974433 455688999999999999999753
No 87
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=33.62 E-value=58 Score=29.60 Aligned_cols=55 Identities=11% Similarity=0.162 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 004134 214 HTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270 (772)
Q Consensus 214 ktpe~Y~~~RN~iI~~yr~NP~eyL-TvTacRRnL~G~dv~sI~RVH~FLE~WGLINY 270 (772)
..-.+|-.+|+.|+.- ...|..+| |..+.-+.+ |+....+.+...-|+..|||-.
T Consensus 12 ~~~~i~~~l~~~I~~g-~~~~G~~lPse~~La~~~-~vSr~tvr~Al~~L~~~Gli~~ 67 (126)
T 3by6_A 12 VYLQLVDRIKNEVATD-VLSANDQLPSVRETALQE-KINPNTVAKAYKELEAQKVIRT 67 (126)
T ss_dssp HHHHHHHHHHHHHHTT-SSCTTCEECCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEE
Confidence 3456777788887764 35789999 888864443 4557889999999999999954
No 88
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=33.06 E-value=38 Score=31.05 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhccccc
Q 004134 215 TPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINY 270 (772)
Q Consensus 215 tpe~Y~~~RN~iI~~yr~NP~eyL-TvTacRRnL~G~dv~sI~RVH~FLE~WGLINY 270 (772)
.-++|-.+|+.|+.- ...|...| |..+.-+.+ |+....+.+...-|+..|||-.
T Consensus 6 ~~~i~~~i~~~I~~g-~l~~G~~LPse~~La~~~-gvSr~tVr~Al~~L~~~Gli~~ 60 (129)
T 2ek5_A 6 YKQIASLIEDSIVDG-TLSIDQRVPSTNELAAFH-RINPATARNGLTLLVEAGILYK 60 (129)
T ss_dssp HHHHHHHHHHHHHTT-SSCTTSCBCCHHHHHHHT-TCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEEE
Confidence 356788888888875 46799999 887754443 5557889999999999999965
No 89
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=32.68 E-value=42 Score=31.79 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCCcceeeccCCcCcccChhhhccCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHH
Q 004134 345 ENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLL 415 (772)
Q Consensus 345 ~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CF~~G~~~~~hss~DF~rvd~~~~~~~~~~~~WT~qEellLL 415 (772)
-..|.-|+.. .+.+.+.. ..+.+|.+|-.--+..+.| .+++- ..-+.||.+|...|.
T Consensus 25 N~~CaDCg~~--~P~WaS~n-~GvfiC~~CsgiHR~LG~~---s~VrS--------l~ld~w~~~~l~~m~ 81 (140)
T 2olm_A 25 NRKCFDCDQR--GPTYVNMT-VGSFVCTSCSGSLRGLNPP---HRVKS--------ISMTTFTQQEIEFLQ 81 (140)
T ss_dssp GGSCTTTCSS--CCCEEETT-TTEEECHHHHHHHTTSSSC---CCEEE--------TTTCCCCHHHHHHHH
T ss_pred CCcCCCCCCC--CCCceeec-cCEEEchhccchhccCCCc---ceeee--------cCCCCCCHHHHHHHH
Confidence 4579999875 44454443 3678999998654433333 34441 122569997765554
No 90
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.60 E-value=34 Score=32.06 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 004134 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (772)
Q Consensus 222 ~RN~iI~~yr~NP~eyLTvTacRRnL----~G~dv~sI~RVH~FLE~WGLINY 270 (772)
-|-.|++....++...+|+.+.-..| .+.+..+|.|...+|+..|||.-
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 46678887765533689999874433 35568899999999999999974
No 91
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=30.32 E-value=93 Score=24.82 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004134 627 KQFAEVETLLMRECEQVEKARQRFATERTRIVS 659 (772)
Q Consensus 627 k~feeLE~~Le~Ere~LE~~Rq~L~~eRl~~~~ 659 (772)
+-++--|.+|.+|| +||..|+.|..-|..--+
T Consensus 9 qEi~Aqe~iLr~Er-ELEeAr~~La~iR~~kY~ 40 (50)
T 2qdq_A 9 QIIAAQEEMLRKER-ELEEARKKLAQIRQQQYK 40 (50)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 34455577888887 689999999988766433
No 92
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=30.01 E-value=59 Score=26.83 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 004134 223 RNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (772)
Q Consensus 223 RN~iI~~yr~NP~eyLTvTacRRnL~G~dv~sI~RVH~FLE~WGLINYq 271 (772)
|..|+.....++ .+|+++.-+.+ |....++.|...-|+..|+|-..
T Consensus 2 r~~Il~~L~~~~--~~s~~eLa~~l-gvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 2 KNEILEFLNRHN--GGKTAEIAEAL-AVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHHSC--CCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEEEe
Confidence 677887776653 48998876655 55678999999999999999754
No 93
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.83 E-value=2e+02 Score=32.02 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004134 631 EVETLLMRECEQVEKARQRFATERTRIVS 659 (772)
Q Consensus 631 eLE~~Le~Ere~LE~~Rq~L~~eRl~~~~ 659 (772)
+||+.++..++++++.+|++-.-|..+-+
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777776665555433
No 94
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.15 E-value=54 Score=30.64 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhccccc
Q 004134 220 MECRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINY 270 (772)
Q Consensus 220 ~~~RN~iI~~yr~NP~eyLTvTacRRnL----~G~dv~sI~RVH~FLE~WGLINY 270 (772)
-.-|-.|++....+ ...+|+.+.-..| .+.+..+|.|...+|+..|||.=
T Consensus 26 T~qR~~IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 26 SKQREEVVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHHHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 34577888888776 4589999874433 35568899999999999999975
No 95
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=27.21 E-value=37 Score=30.83 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=44.0
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 004134 213 DHTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (772)
Q Consensus 213 ~ktpe~Y~~~RN~iI~~yr~NP~eyL-TvTacRRnL~G~dv~sI~RVH~FLE~WGLINYq 271 (772)
...-.+|-.+|..|+.- ...|..+| +..+--+.+ |+....+.+...-|+..|||-..
T Consensus 11 ~~~~~i~~~l~~~I~~g-~~~~G~~lPs~~~La~~~-~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 11 AIYLQIADRICDDILLG-QYEEEGRIPSVREYASIV-EVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp -CTTHHHHHHHHHHHTT-SSCBTSEECCTTTTTTCC--CCSGGGHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHH-CcCHHHHHHHHHHHHHCCcEEEE
Confidence 45678999999999876 46799999 887754433 44568899999999999999653
No 96
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=26.86 E-value=2e+02 Score=24.62 Aligned_cols=48 Identities=27% Similarity=0.240 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhCC
Q 004134 614 IINHQLKRLELKLKQFAEVETLLMRECEQVEKARQR--FATERTRIVSTRLGP 664 (772)
Q Consensus 614 iIe~QLKKLElKLk~feeLE~~Le~Ere~LE~~Rq~--L~~eRl~~~~~rl~~ 664 (772)
-++..|..||.||.|.+++=.-|. ..+-++.++ .+..+++.+..|+..
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn---~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELS---EALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678899999998776522222 122222222 244566778888874
No 97
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.70 E-value=2.1e+02 Score=24.87 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004134 619 LKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTR 661 (772)
Q Consensus 619 LKKLElKLk~feeLE~~Le~Ere~LE~~Rq~L~~eRl~~~~~r 661 (772)
+.|||.|++..=+.=++|..|.+.|......|..+...+...|
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~ 50 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQR 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 98
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=24.15 E-value=3.6e+02 Score=23.58 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004134 592 AATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQ 648 (772)
Q Consensus 592 AA~KAk~lA~~EErEIqrLv~~iIe~QLKKLElKLk~feeLE~~Le~Ere~LE~~Rq 648 (772)
+|.-..-|-.+|-.++..|-..| +..|+...+.+++||+.+++-+..+....+
T Consensus 27 aA~Ee~YfrqkekEqL~~LKkkl----~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 27 QAEEERYFRARAKEQLAALKKHK----ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333444444444444443333 566777788888888888877766665543
No 99
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.83 E-value=76 Score=29.38 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCceeeHHHHhhcc----CCCChhHHHHHHHhhhhhcccccc
Q 004134 222 CRNHIVAKYMDNPEKRLIVSDCQGLV----DGVSPEDLTRIFRFLNHWGIINYC 271 (772)
Q Consensus 222 ~RN~iI~~yr~NP~eyLTvTacRRnL----~G~dv~sI~RVH~FLE~WGLINYq 271 (772)
-|-.|++..... ...+|+.+.-..| .+.+..+|.|...+|+..|||.--
T Consensus 23 qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 23 QRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp HHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEE
Confidence 466788877664 5689998864333 355688999999999999999753
No 100
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.17 E-value=55 Score=31.05 Aligned_cols=95 Identities=16% Similarity=0.331 Sum_probs=48.5
Q ss_pred cCCCCCCCCCCCCcceeeccCCcCcccChhhhccCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-
Q 004134 344 SENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMYN- 422 (772)
Q Consensus 344 ~~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CF~~G~~~~~hss~DF~rvd~~~~~~~~~~~~WT~qEellLLEaIe~yg- 422 (772)
.-..|.-|+.. .+.+.+.. ..+.+|.+|-.--+..+.| ..+|.. ..-+.||.+|...|.. + |
T Consensus 28 ~N~~CaDCga~--~P~WaS~n-~GvfiC~~CsgiHR~LG~h----iS~VkS------l~ld~w~~~~l~~m~~-~---GN 90 (141)
T 2crr_A 28 DNKYCADCEAK--GPRWASWN-IGVFICIRCAGIHRNLGVH----ISRVKS------VNLDQWTAEQIQCMQD-M---GN 90 (141)
T ss_dssp GGSSCSSSCCS--SCCSEETT-TTEECCHHHHHHHHHHCTT----TCCCBC------SSSSCCCHHHHHHHHH-T---HH
T ss_pred cCCcCCCCCCC--CCCeEEec-cCeEEhhhhhHhHhcCCCC----CCeeeE------CCCCCCCHHHHHHHHH-H---cc
Confidence 34579999875 34444443 3578999997644433333 223332 1235799977655543 2 1
Q ss_pred CCHHHHHH-HhC----CCCHHHHHHHHHhC-CCCCCCcc
Q 004134 423 DNWNEIAE-HVS----TKSKAQCILHFVRL-PMEDGILE 455 (772)
Q Consensus 423 ~NW~~IAe-hVG----tKT~eECi~hFlqL-PIED~fLe 455 (772)
...+.|=+ ++. .-++.+-+..||+- |++-.|+.
T Consensus 91 ~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~ 129 (141)
T 2crr_A 91 TKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYD 129 (141)
T ss_dssp HHHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCC
T ss_pred HHHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccC
Confidence 11111111 111 12345566778774 55555554
No 101
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=21.39 E-value=45 Score=33.36 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=46.9
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCceeeHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 004134 213 DHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (772)
Q Consensus 213 ~ktpe~Y~~~RN~iI~~yr~NP~eyLTvTacRRnL~G~dv~sI~RVH~FLE~WGLINYq 271 (772)
+..+.+|-.+|+.|+.- ...|+.+|+..+--..+ |+.-..|.+-..-|+.-|||-..
T Consensus 26 s~~~~v~~~L~~~I~~g-~l~pG~~L~e~~La~~l-gVSr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDG-SLPSGTALRQQELATLF-GVSRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp GHHHHHHHHHHHHHHTS-SSCTTCBCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhC-CCCCcCeeCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEEe
Confidence 55678999999999986 46799999988854444 55678899999999999999874
No 102
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=21.03 E-value=75 Score=30.37 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=33.1
Q ss_pred ccCCCCCCCCCCCCcceeeccCCcCcccChhhhccCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHH
Q 004134 343 LSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLL 414 (772)
Q Consensus 343 ~~~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CF~~G~~~~~hss~DF~rvd~~~~~~~~~~~~WT~qEellL 414 (772)
..-..|.-|+.. .+.+-+.. ..+.+|.+|-.--+..+.| ..|++-- ..+..||.+|...|
T Consensus 35 p~N~~CaDCga~--~P~WaS~n-~GvfiC~~CsgiHR~LG~h--IS~VrSl-------~LD~~W~~~~l~~m 94 (144)
T 2p57_A 35 PTNKACFDCGAK--NPSWASIT-YGVFLCIDCSGVHRSLGVH--LSFIRST-------ELDSNWNWFQLRCM 94 (144)
T ss_dssp GGGGBCTTTCCB--SCCEEEGG-GTEEECHHHHHHHHHHCTT--TCCEEES-------SSCCCCCHHHHHHH
T ss_pred CCCCcCCCCcCC--CCCeEEec-cCEEEhhhchHHHcCCCCC--CCeeeec-------ccCCCCCHHHHHHH
Confidence 344679999875 34444443 3578999997644433332 1233311 11224998765554
No 103
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=20.65 E-value=83 Score=28.37 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcee-eHHHHhhccCCCChhHHHHHHHhhhhhcccccc
Q 004134 213 DHTPEKYMECRNHIVAKYMDNPEKRL-IVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYC 271 (772)
Q Consensus 213 ~ktpe~Y~~~RN~iI~~yr~NP~eyL-TvTacRRnL~G~dv~sI~RVH~FLE~WGLINYq 271 (772)
...-++|-.+|+.|++- ...|..+| |..+.-+.+ |+....+.+...-|+.-|||--.
T Consensus 13 ~~~~~i~~~i~~~I~~g-~~~~g~~Lps~~~La~~~-~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 13 PIYSQISDWMKKQMITG-EWKGEDKLPSVREMGVKL-AVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp CHHHHHHHHHHHHHHTT-SSCTTCBCCCHHHHHHHH-TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHHhC-CCCCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCeEEEe
Confidence 34456777777777764 35689999 577754443 55678999999999999999653
No 104
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.16 E-value=5e+02 Score=23.74 Aligned_cols=13 Identities=15% Similarity=0.010 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 004134 632 VETLLMRECEQVE 644 (772)
Q Consensus 632 LE~~Le~Ere~LE 644 (772)
...=.+.||..=|
T Consensus 74 Y~~DF~aERadRE 86 (110)
T 2v4h_A 74 YKADFQAERHARE 86 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHccchhhHH
Confidence 3334445554444
No 105
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=20.15 E-value=82 Score=29.83 Aligned_cols=59 Identities=17% Similarity=0.363 Sum_probs=33.8
Q ss_pred ccCCCCCCCCCCCCcceeeccCCcCcccChhhhccCCCCCCCCCCCceecCCCCCCCCCCCCCCCHHHHHHH
Q 004134 343 LSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLL 414 (772)
Q Consensus 343 ~~~~~C~~C~~~~~~~~y~c~kc~d~~LC~~CF~~G~~~~~hss~DF~rvd~~~~~~~~~~~~WT~qEellL 414 (772)
..-..|.-|+.. .+.+.+.. ..+.+|.+|-.--|..+.|- .|++ . ..-+.||.++...|
T Consensus 34 p~N~~CaDCga~--~P~WaS~n-~GvfiC~~CsgiHR~LG~hi--S~Vr--S------l~lD~w~~~~l~~m 92 (138)
T 2owa_A 34 PENRTCFDCESR--NPTWLSLS-FAVFICLNCSSDHRKMGVHI--SFVR--S------SDLDKFTPIQLVRM 92 (138)
T ss_dssp GGGGBCTTTCCB--SCCEEETT-TTEEECHHHHHHHHTTCTTT--CCEE--E------TTTSCCCHHHHHHH
T ss_pred cCCCcCCCCcCC--CCCeEEec-CCEEEhHhhhHHHhCCCCCC--Ceee--e------cCcCcCCHHHHHHH
Confidence 344579999875 34444443 35789999986544433332 2333 1 12246999775444
Done!