BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004136
(771 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/403 (21%), Positives = 163/403 (40%), Gaps = 74/403 (18%)
Query: 43 ANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELI--NKEKV 98
A +G+ + A+++A++ ++S R + L L++ D D + A + I +
Sbjct: 28 AKGSIGRGVLPAVELAIEQIRNESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHL 87
Query: 99 KVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTP-LSMSRRWPYLIRMASNDSEQMKC 157
V G+ T+++AE + LSFAA TP L+ +++PY R +D+
Sbjct: 88 MVFGGVCP-SVTSIIAESLQGWNLVQLSFAA--TTPVLADKKKYPYFFRTVPSDNAVNPA 144
Query: 158 IADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSIS-DP 216
I L + Y W+RV + +D + +E +++ + + S S DP
Sbjct: 145 ILKLLKHYQWKRVGTLTQD---------VQRFSEVRNDLTGVLYGEDIEISDTESFSNDP 195
Query: 217 KEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV---------- 266
+V KK++ R+ I+ Q +M +F A + G WI+
Sbjct: 196 CTSV----KKLKGNDVRI-ILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWE 250
Query: 267 -TNTVANALDSLNTTVISSMEGTLGIKXXXXXXXXPYKEFSALFRRNFTSEY-PEEDHFH 324
+T AN+ L ++++MEG +G+ K S + + EY +
Sbjct: 251 QVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQ-IKTISGKTPQQYEREYNNKRSGVG 309
Query: 325 PSIHALRAHDSIKIITEAIGR----------------LNYNISS-PEMLLRQMLSSDFSG 367
PS A+D I +I + + R NY + ++L M ++F G
Sbjct: 310 PSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFG 369
Query: 368 LSGKIRFKDGELLN---------------------ADTLRIVN 389
++G++ F++GE + ADTL I+N
Sbjct: 370 VTGQVVFRNGERMGTIKFTQFQDSREVKVGEYNAVADTLEIIN 412
>pdb|4EY3|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter In Complex With P-Hydroxybenzoic Acid
pdb|4EYG|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Bisb5 In
Complex With Vanillic Acid
pdb|4EYG|B Chain B, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Bisb5 In
Complex With Vanillic Acid
pdb|4EYK|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Bisb5 In
Complex With 3,4-Dihydroxy Benzoic Acid
Length = 368
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 9/182 (4%)
Query: 30 NIEEVTKIGAIV---DANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAA 86
N E+ K+G IV + GKQ A+K+ ++ K+ + ++D P
Sbjct: 2 NAEDTFKVGLIVPXTGGQASTGKQIDNAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTK 61
Query: 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIR 146
AQELI +KV VIAG A +A++ +VP + AA ++ R PY++R
Sbjct: 62 RLAQELIVNDKVNVIAGFGITPAALAAAPLATQAKVPEIVXAAGTSI---ITERSPYIVR 118
Query: 147 MASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLV 206
+ ++ I D A K ++VA + D G D+ LA E EI +
Sbjct: 119 TSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDA--LAFFKERF-TAGGGEIVEEIK 175
Query: 207 LP 208
+P
Sbjct: 176 VP 177
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 30/177 (16%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 409 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIA 466
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV--PAKQEESTWMFTKPFTWEMWMVTAASFIY 590
+ LTI R E ++F++P+ G S+++ P K + + F P +E+WM ++I
Sbjct: 467 IAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIG 526
Query: 591 TMFIVWLLEHQS-----NPEFRGTLKDQ---------ISNILWFAFSTIFFSHRANI 633
+++L+ S EF + Q I N LWF+ F A+I
Sbjct: 527 VSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGA-FMQQGADI 582
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 40/254 (15%)
Query: 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRD---HN---------- 79
K GA+ Q G Q + AM ++ NSD N L +IRD H+
Sbjct: 43 KCGAV---REQYGIQRVEAMLHTLERINSDPTLLPNITLGCEIRDSCWHSAVALEQSIEF 99
Query: 80 -RDPFQAATAAQELINK--------EKVKVIAGMETWEETAVVAEIASRVQ---VPILSF 127
RD ++ + L+ K I G+ ++V ++ + +Q +P +++
Sbjct: 100 IRDSLISSEEEEGLVRCVDGSSSSFRSKKPIVGVIGPGSSSVAIQVQNLLQLFNIPQIAY 159
Query: 128 AAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187
+A ++ LS + Y +R+ +D++Q + + D+ ++YNW V+A++ + Y G+SG
Sbjct: 160 SATSMD-LSDKTLFKYFMRVVPSDAQQARAMVDIVKRYNWTYVSAVHTEGNY-GESG--- 214
Query: 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIH 247
EA +++S+ E S I S + +++ LKK+ + +V MT+
Sbjct: 215 --MEAFKDMSAKEGISIAHSYKIYS-NAGEQSFDKLLKKLTSHLPKARVVACFCEGMTVR 271
Query: 248 -LFTEANRMGLVGK 260
L R+GL G+
Sbjct: 272 GLLMAMRRLGLAGE 285
>pdb|4EVS|A Chain A, Crystal Structure Of Abc Transporter From R. Palustris -
Solute Binding Protein (Rpa0985) In Complex With
4-Hydroxybenzoate
Length = 371
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 68 NHKLSLQIRDH-NRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126
H + RD + +P Q+ AQELI KEKV+ IAG+ VA + +VP +
Sbjct: 42 GHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYIAGLYFTPNAXAVAPLLQEAKVPXVV 101
Query: 127 FAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDS 183
A S++ + PY++R + + A +A++ ++VA D G D+
Sbjct: 102 LNAATS---SITEKSPYIVRTSFTXFQNTVPAAKVAKQKGAKKVAIAVSDYGPGIDA 155
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 73 LQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQ---VPILSFAA 129
+ IRD + Q L K IAG+ ++V ++ + +Q +P ++++A
Sbjct: 101 ISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSA 160
Query: 130 PAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189
++ LS + Y +R+ +D+ Q + + D+ ++YNW V+A++ + Y G+SG A
Sbjct: 161 TSID-LSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNY-GESGMDAFK 218
Query: 190 AEALQ 194
A Q
Sbjct: 219 ELAAQ 223
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 26/164 (15%)
Query: 42 DANSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRD-HNRDPF---QAATAAQELIN 94
D + G + AM A+ NSD N L +I D +RD + Q+ T Q LI
Sbjct: 37 DIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQ 96
Query: 95 K------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS 136
K EKV + G + +VA I Q+P +S+A+ A LS
Sbjct: 97 KDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTA-PELS 155
Query: 137 MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
RR+ + R+ DS Q + + D+ + W V+ + + YG
Sbjct: 156 DDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYG 199
>pdb|2LIV|A Chain A, Periplasmic Binding Protein Structure And Function.
Refined X-Ray Structures Of The
LeucineISOLEUCINEVALINE-Binding Protein And Its Complex
With Leucine
Length = 344
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQ 90
+V +GA+ +Q G Q T + AV + N+ + +KL + D DP QA A
Sbjct: 4 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIAKYDDACDPKQAVAVAN 63
Query: 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASN 150
+++N + +K + G T ++I + +++ AA A P +R + ++R
Sbjct: 64 KVVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATA--PELTARGYQLILRTTGL 120
Query: 151 DSEQMKCIAD-LARKYNWRRVAAIYEDNVYG 180
DS+Q A + K +R+A +++ YG
Sbjct: 121 DSDQGPTAAKYILEKVKPQRIAIVHDKQQYG 151
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 26/164 (15%)
Query: 42 DANSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRD-HNRDPF---QAATAAQELIN 94
D + G + AM A+ NSD N L +I D +RD + Q+ T Q LI
Sbjct: 37 DIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQ 96
Query: 95 K------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLS 136
K EKV + G + +VA I Q+P +S+A+ A LS
Sbjct: 97 KDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTA-PELS 155
Query: 137 MSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
RR+ + R+ DS Q + + D+ + W V+ + + YG
Sbjct: 156 DDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYG 199
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 73 LQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQ---VPILSFAA 129
+ IRD + Q L K IAG+ ++V ++ + +Q +P ++++A
Sbjct: 96 ISIRDEKDGLNRCLPDGQTLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSA 155
Query: 130 PAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189
++ LS + Y +R+ +D+ Q + + D+ ++YNW V+A++ + Y G+SG A
Sbjct: 156 TSID-LSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNY-GESGMDAFK 213
Query: 190 AEALQ 194
A Q
Sbjct: 214 ELAAQ 218
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + HL + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTHLGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVY--------DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y D +NG + D D AV L I R E ++F++P+ G S++
Sbjct: 61 YGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 447 AMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDL 506
A P + +R VP R+ + P + +K GF I++ + + + +
Sbjct: 23 ADPISGTCIRDSVPCRSQLNR---THSPPPDAPRPEKRC-CKGFCIDILKRLAHTIGFSY 78
Query: 507 PYEFVPH-------DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSM 559
V + DGV++ +I V+ + D A+G LTI R+E V+F+ P+ E+G S+
Sbjct: 79 DLYLVTNGKHGKKIDGVWNGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFVETGISV 138
Query: 560 IV 561
+V
Sbjct: 139 MV 140
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + HL + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTHLGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVY--------DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y D +NG + D D AV L I R E ++F++P+ G S++
Sbjct: 61 YGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|1Z15|A Chain A, Crystal Structure Analysis Of Periplasmic
Leu/ile/val-binding Protein In Superopen Form
pdb|1Z16|A Chain A, Crystal Structure Analysis Of Periplasmic
Leu/ile/val-binding Protein With Bound Leucine
pdb|1Z17|A Chain A, Crystal Structure Analysis Of Periplasmic
LeuILEVAL-Binding Protein With Bound Ligand Isoleucine
pdb|1Z18|A Chain A, Crystal Structure Analysis Of Periplasmic
LeuILEVAL-Binding Protein With Bound Valine
Length = 344
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQ 90
+V +GA+ +Q G Q T + AV + N+ + +KL + D DP QA A
Sbjct: 4 KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVAN 63
Query: 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASN 150
+++N + +K + G T ++I + +++ AA A P +R + ++R
Sbjct: 64 KVVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATA--PELTARGYQLILRTTGL 120
Query: 151 DSEQMKCIAD-LARKYNWRRVAAIYEDNVYG 180
DS+Q A + K +R+A +++ YG
Sbjct: 121 DSDQGPTAAKYILEKVKPQRIAIVHDKQQYG 151
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + HL + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTHLGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVY--------DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y D +NG + D D AV L I R E ++F++P+ G S++
Sbjct: 61 YGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 112/256 (43%), Gaps = 46/256 (17%)
Query: 44 NSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRD-HNRDPFQAATAAQELINKEKVK 99
N G Q + AM A+ N D+ KL + I D +RD + A + E + K
Sbjct: 37 NEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTY-ALEQSLEFVRASLTK 95
Query: 100 V---------------------IAGMETWEETAVVAEIASRV---QVPILSFAAPAVTPL 135
V IAG+ ++V ++A+ + Q+P +S+A+ + L
Sbjct: 96 VDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAK-L 154
Query: 136 SMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA-LQ 194
S R+ Y R D Q K +A++ R +NW V+ + + Y G++G A EA L+
Sbjct: 155 SDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDY-GETGIEAFEQEARLR 213
Query: 195 N--VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252
N ++++E R S+I ++V EL +Q +RV ++ S D + L A
Sbjct: 214 NICIATAEKVGR------SNIRKSYDSVIREL--LQKPNARVVVLFMRS-DDSRELIAAA 264
Query: 253 NRMGLVGKDSVWIVTN 268
NR V W+ ++
Sbjct: 265 NR---VNASFTWVASD 277
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 92/403 (22%), Positives = 153/403 (37%), Gaps = 81/403 (20%)
Query: 44 NSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQIRD-HNRDPFQAATAAQELINKEKVK 99
N G Q + AM A+ N D KL + I D +RD + A + E + K
Sbjct: 36 NEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTY-ALEQSLEFVRASLTK 94
Query: 100 V---------------------IAGMETWEETAVVAEIASRV---QVPILSFAAPAVTPL 135
V IAG+ ++V ++A+ + Q+P +S+A+ + L
Sbjct: 95 VDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAK-L 153
Query: 136 SMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA-LQ 194
S R+ Y R D Q K +A++ R +NW V+ + + Y G++G A EA L+
Sbjct: 154 SDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDY-GETGIEAFEQEARLR 212
Query: 195 NVS--SSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252
N+S ++E R S+I ++V EL +Q +RV ++ S D + L A
Sbjct: 213 NISIATAEKVGR------SNIRKSYDSVIREL--LQKPNARVVVLFMRS-DDSRELIAAA 263
Query: 253 NRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKXXXXXXXXPYKEFSALFRRN 312
+R W+ ++ ++I E P ++F R
Sbjct: 264 SR---ANASFTWVASDGWG-----AQESIIKGSEHVAYGAITLELASQPVRQFD----RY 311
Query: 313 FTSEYPEEDH------------FHPSIHALRAHDSIKIITEAIGRLNYNISSPEML---- 356
F S P +H F S+ R H + AI NY S M
Sbjct: 312 FQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNA 371
Query: 357 ----------LRQMLSSDFSGLSGKIRFKDGELLNADTLRIVN 389
+++ L + + L ++ DG+ L D L +N
Sbjct: 372 VYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKDYLLKIN 414
>pdb|4F06|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Haa2
Rpb_2270 In Complex With P- Hydroxybenzoic Acid
Length = 371
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
Query: 27 TNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDH-NRDPFQA 85
+N + +V IG + GK + V + H + RD + +P Q+
Sbjct: 1 SNADTIKVGVIGTXSGPYALFGKNYKXGIDAWVAEHGNKVAGHTVEFVYRDEVSPNPAQS 60
Query: 86 ATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVP-ILSFAAPAVTPLSMSRRWPYL 144
AQELI KEKV+ +AG+ VA + +VP ++ AA + S++ + PY+
Sbjct: 61 KALAQELIVKEKVQYLAGLYFTPNAXAVAPLLQEAKVPXVVXNAATS----SITEKSPYI 116
Query: 145 IRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDS 183
+R + + A +A++ +VA D G D+
Sbjct: 117 VRTSFTXFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDA 155
>pdb|3TX6|A Chain A, The Structure Of A Putative Abc-Transporter Periplasmic
Component From Rhodopseudomonas Palustris
pdb|4F8J|A Chain A, The Structure Of An Aromatic Compound Transport Protein
From Rhodopseudomonas Palustris In Complex With
P-Coumarate
pdb|4FB4|A Chain A, The Structure Of An Abc-Transporter Family Protein From
Rhodopseudomonas Palustris In Complex With Caffeic Acid
Length = 362
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 68 NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127
H L + + D DP A T A+ + + K VI G T V+ +A+ QVP ++
Sbjct: 40 GHPLKVIVLDDGGDPTAATTNARRFVTESKADVIXGSSVTPPTVAVSNVANEAQVPHIAL 99
Query: 128 AAPAVTP 134
A +TP
Sbjct: 100 APLPITP 106
>pdb|4DQD|A Chain A, The Crystal Structure Of A Transporter In Complex With
3-Phenylpyruvic Acid
Length = 363
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 77 DHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPA--VTP 134
D DP +AA A++L+++EKV V+ G + + +IA+ + P+ + AA A V P
Sbjct: 46 DDESDPTKAAQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLXTXAAAAILVAP 105
Query: 135 LSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
R+W Y ++ ND + I K ++V I + YG
Sbjct: 106 XDERRKWVY--KVVPNDDIXAEAIGKYIAKTGAKKVGYIGFSDAYG 149
>pdb|3SG0|A Chain A, The Crystal Structure Of An Extracellular Ligand-Binding
Receptor From Rhodopseudomonas Palustris Haa2
Length = 386
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 77 DHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPA--VTP 134
D DP +AA A++L+++EKV V+ G + + +IA+ + P+ + AA A V P
Sbjct: 69 DDESDPTKAAQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLXTXAAAAILVAP 128
Query: 135 LSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYG 180
R+W Y ++ ND + I K ++V I + YG
Sbjct: 129 XDERRKWVY--KVVPNDDIXAEAIGKYIAKTGAKKVGYIGFSDAYG 172
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + L + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTILGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVY--------DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y D +NG + D D AV L I R E ++F++P+ G S++
Sbjct: 61 YGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + L + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTILGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVY--------DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y D +NG + D D AV L I R + ++F++P+ G S++
Sbjct: 61 YGAQDDVNGQWNGMVRELIDHKADLAVAPLAITCVREKVIDFSKPFMTLGISIL 114
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 467 KFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYD 526
K V+ + P KN + G S++++R V + ++ E+V + + I V +
Sbjct: 7 KVGVVGNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWN--SEYVRQNSISAG-ITAVAE 63
Query: 527 KTYDAAVGDLTILGNRT--EYVEFTQPYAESGFSMIVPA 563
D +G +++ R E + FTQPY SG +++P
Sbjct: 64 GELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPG 102
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 20/134 (14%)
Query: 443 PKGWAMPSNQEPMRIG----VPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLV 498
P+G AM S + R V T +V++K N + N RY+G+ ++L +
Sbjct: 3 PRGSAMGSGNDTSRGANKTVVVTTILESPYVMMKK---NHEMLEGNERYEGYCVDLAAEI 59
Query: 499 VDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAAVGDLTILGNRTEYVE 547
H + V DG Y + NG VY K D A+ LTI R E ++
Sbjct: 60 AKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIAIAPLTITLVREEVID 117
Query: 548 FTQPYAESGFSMIV 561
F++P+ G S+++
Sbjct: 118 FSKPFMSLGISIMI 131
>pdb|3UKJ|A Chain A, Crystal Structure Of Extracellular Ligand-Binding Receptor
From Rhodopseudomonas Palustris Haa2
pdb|4EYO|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Haa2 In
Complex With P-Coumaric Acid
pdb|4EYQ|A Chain A, Crystal Structure Of Solute Binding Protein Of Abc
Transporter From Rhodopseudomonas Palustris Haa2 In
Complex With Caffeic Acid3-(4- Hydroxy-Phenyl)pyruvic
Acid
Length = 362
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 68 NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127
H + + D DP A T A+ + + K VI G T V+ +A+ QVP ++
Sbjct: 40 GHPIKXIVLDDGGDPTAATTNARRFVTESKADVIXGSSVTPPTVAVSNVANEAQVPHIAL 99
Query: 128 AAPAVTP 134
A VTP
Sbjct: 100 APLPVTP 106
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 467 KFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYD 526
K V+ + P KN + G S++++R V + ++ E+V + + I V +
Sbjct: 7 KVGVVGNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWN--SEYVRQNSISAG-ITAVAE 63
Query: 527 KTYDAAVGDLTILGNRT--EYVEFTQPYAESGFSMIVPA 563
D +G +++ R E + FTQPY SG +++P
Sbjct: 64 GELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPG 102
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 101/234 (43%), Gaps = 17/234 (7%)
Query: 53 TAMKIAVQNFNSDSRNHKLSLQIR-----DHNRDPFQAATAAQELINKEKVKVIAGMETW 107
T+ ++A+++ + H LS+ R + DP T +L++ K++ + +
Sbjct: 13 TSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 72
Query: 108 EETAVVAE---IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164
++ A+ I+++ PIL + ++ + + +Q + ++ +
Sbjct: 73 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEE 132
Query: 165 YNWRRVAAIYEDNVYGGDSGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGE 223
Y+W + + + G + + ++N E++ L+L S+ D ++ +
Sbjct: 133 YDWYIFSIV--TTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQ 188
Query: 224 LKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSL 277
LKK+Q I+L + + ++F AN +GL G WIV + VA D++
Sbjct: 189 LKKLQSP----IILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTV 238
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 101/234 (43%), Gaps = 17/234 (7%)
Query: 53 TAMKIAVQNFNSDSRNHKLSLQIR-----DHNRDPFQAATAAQELINKEKVKVIAGMETW 107
T+ ++A+++ + H LS+ R + DP T +L++ K++ + +
Sbjct: 14 TSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73
Query: 108 EETAVVAE---IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164
++ A+ I+++ PIL + ++ + + +Q + ++ +
Sbjct: 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEE 133
Query: 165 YNWRRVAAIYEDNVYGGDSGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGE 223
Y+W + + + G + + ++N E++ L+L S+ D ++ +
Sbjct: 134 YDWYIFSIV--TTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQ 189
Query: 224 LKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSL 277
LKK+Q I+L + + ++F AN +GL G WIV + VA D++
Sbjct: 190 LKKLQSP----IILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTV 239
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 456 RIGVPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH 513
R + T E +V+ + D PL GN R++G+ ++L + + + L + + VP
Sbjct: 3 RTLIVTTILEEPYVMYRKSDKPLYGND-----RFEGYCLDLLKELSNILGFIYDVKLVPD 57
Query: 514 --------DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
G ++ ++ + D D AV LTI R + ++F++P+ G S++
Sbjct: 58 GKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL 112
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 449 PSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPY 508
P + +R VP R KFV I + G + K + GF I++ + + + +
Sbjct: 25 PLTETCVRNTVPCR----KFVKINNSTNEGMNVKKCCK--GFCIDILKKLSRTVKFTYDL 78
Query: 509 EFVPH-------DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
V + + V++ +I V + AVG LTI R+E V+F+ P+ E+G S++V
Sbjct: 79 YLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMV 138
Query: 562 PAKQEESTWMFTKPF 576
++ + T + K F
Sbjct: 139 -SRGTQVTGLSDKKF 152
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + L + V DG
Sbjct: 16 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTILGFTYEIRLV-EDGK 69
Query: 517 Y--DDLINGVY--------DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y D +NG + D D AV L I R + ++F++P+ G S++
Sbjct: 70 YGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 123
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + L + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTILGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVY--------DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y D +NG + D D AV L I R + ++F++P+ G S++
Sbjct: 61 YGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 456 RIGVPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH 513
R + T E +V+ + D PL GN R++G+ ++L + + + L + + VP
Sbjct: 4 RTLIVTTILEEPYVMYRKSDKPLYGND-----RFEGYCLDLLKELSNILGFLYDVKLVPD 58
Query: 514 --------DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
G ++ ++ + D D AV LTI R + ++F++P+ G S++
Sbjct: 59 GKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL 113
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 456 RIGVPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH 513
R + T E +V+ + D PL GN R++G+ ++L + + + L + + VP
Sbjct: 4 RTLIVTTILEEPYVMYRKSDKPLYGND-----RFEGYCLDLLKELSNILGFLYDVKLVPD 58
Query: 514 --------DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
G ++ ++ + D D AV LTI R + ++F++P+ G S++
Sbjct: 59 GKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL 113
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 456 RIGVPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH 513
R + T E +V+ + D PL GN R++G+ ++L + + + L + + VP
Sbjct: 4 RTLIVTTILEEPYVMYRKSDKPLYGND-----RFEGYCLDLLKELSNILGFLYDVKLVPD 58
Query: 514 --------DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
G ++ ++ + D D AV LTI R + ++F++P+ G S++
Sbjct: 59 GKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL 113
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 456 RIGVPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH 513
R + T E +V+ + D PL GN R++G+ ++L + + + L + + VP
Sbjct: 4 RTLIVTTILEEPYVMYRKSDKPLYGND-----RFEGYCLDLLKELSNILGFLYDVKLVPD 58
Query: 514 --------DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
G ++ ++ + D D AV LTI R + ++F++P+ G S++
Sbjct: 59 GKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISIL 113
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + L + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTILGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVY--------DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y D +NG + D D AV L I R + ++F++P+ G S++
Sbjct: 61 YGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + L + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTILGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVY--------DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y D +NG + D D AV L I R + ++F++P+ G S++
Sbjct: 61 YGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + L + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTILGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVY--------DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y D +NG + D D AV L I R + ++F++P+ G S++
Sbjct: 61 YGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + L + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTILGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVY--------DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y D +NG + D D AV L I R + ++F++P+ G S++
Sbjct: 61 YGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + L + V DG
Sbjct: 7 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTILGFTYEIRLV-EDGK 60
Query: 517 Y--DDLINGVY--------DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y D +NG + D D AV L I R + ++F++P+ G S++
Sbjct: 61 YGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3UK0|A Chain A, Rpd_1889 Protein, An Extracellular Ligand-Binding Receptor
From Rhodopseudomonas Palustris
Length = 362
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 68 NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127
H + + + D DP A T A+ + + K VI G + ++ +A+ Q+P ++
Sbjct: 40 GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIXGSSVTPPSVAISNVANEAQIPHIAL 99
Query: 128 AAPAVTP 134
A +TP
Sbjct: 100 APLPITP 106
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E +V+ K D PL GN R++G+ I+L R + L + V DG
Sbjct: 6 IVTTILEEPYVLFKKSDKPLYGND-----RFEGYCIDLLRELSTILGFTYEIRLV-EDGK 59
Query: 517 Y---DD-------LINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y DD ++ + D D AV L I R + ++F++P+ G S++
Sbjct: 60 YGAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 113
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 26 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIA 83
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 84 IAPLTITLCREEVIDFSKPFMSLGISIMI 112
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 443 PKGWAMPSNQEPMRIG----VPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLV 498
P+G M S + R V T +V++K N + N RY+G+ ++L +
Sbjct: 16 PRGSHMGSGNDTSRGANKTVVVTTILESPYVMMKK---NHEMLEGNERYEGYCVDLAAEI 72
Query: 499 VDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAAVGDLTILGNRTEYVE 547
H + V DG Y + NG VY K D A+ LTI R E ++
Sbjct: 73 AKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIAIAPLTITLVREEVID 130
Query: 548 FTQPYAESGFSMIV 561
F++P+ G S+++
Sbjct: 131 FSKPFMSLGISIMI 144
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 487 YDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYV 546
Y GF ++L+ + L D YE P D + +I + K D A+ +TI R + +
Sbjct: 24 YVGFDVDLWAAIAKELKLD--YELKPMD--FSGIIPALQTKNVDLALAGITITDERKKAI 79
Query: 547 EFTQPYAESGFSMIVPA 563
+F+ Y +SG ++V A
Sbjct: 80 DFSDGYYKSGLLVMVKA 96
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 16/132 (12%)
Query: 443 PKGWAMP----SNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLV 498
P+G AM S++ R V T +V+ K N + N RY+G+ ++L +
Sbjct: 3 PRGSAMGISNDSSRGANRTIVVTTILESPYVMYKK---NHEQLEGNERYEGYCVDLAYEI 59
Query: 499 VDHLNYDLPYEFV---------PHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFT 549
H+ V P +++ ++ + D AV LTI R E ++F+
Sbjct: 60 AKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFS 119
Query: 550 QPYAESGFSMIV 561
+P+ G S+++
Sbjct: 120 KPFMSLGISIMI 131
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG Y + NG VY K D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-D 84
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG Y + NG VY K D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-D 84
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG Y + NG VY K D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-D 84
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG Y + NG VY K D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-D 84
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAIAPLTITYVREEVIDFSKPFMSLGISIMI 115
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG Y + NG VY K D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-D 84
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 477 NGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VY 525
N + + N RY+G+ ++L + H + V DG Y + NG VY
Sbjct: 22 NHEALEGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVY 80
Query: 526 DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
K D A+ LTI R E ++F++P+ G S+++
Sbjct: 81 GKA-DIAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG Y + NG VY K D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-D 84
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG Y + NG VY K D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-D 84
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG Y + NG VY K D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-D 84
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAIAPLTITYVREEVIDFSKPFMSLGISIMI 115
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 24/135 (17%)
Query: 444 KGWAMPSNQEPMRIG----VPTRTFFEKFVVIKD--DPLNGNSNDKNLRYDGFSIELFRL 497
+G AM S + R V T +V++K + L GN RY+G+ ++L
Sbjct: 1 RGSAMGSGNDTSRGANKTVVVTTILESPYVMMKKNHEMLEGNE-----RYEGYCVDLAAE 55
Query: 498 VVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAAVGDLTILGNRTEYV 546
+ H + V DG Y + NG VY K D A+ LTI R E +
Sbjct: 56 IAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIAIAPLTITLVREEVI 113
Query: 547 EFTQPYAESGFSMIV 561
+F++P+ G S+++
Sbjct: 114 DFSKPFMSLGISIMI 128
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 30 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIA 87
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 88 IAPLTITLVREEVIDFSKPFMSLGISIMI 116
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIA 86
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 27 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIA 84
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAPLTITLVREEVIDFSKPFMSLGISIMI 113
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG Y + NG VY K D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-D 84
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAIAPLTITYVREEVIDFSKPFMSLGISIMI 115
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 28 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIA 85
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 86 IAPLTITLVREEVIDFSKPFMSLGISIMI 114
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG Y + NG VY K D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-D 84
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIA 86
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG Y + NG VY K D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-D 84
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 28 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIA 85
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 86 IAPLTITLVREEVIDFSKPFMSLGISIMI 114
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG Y + NG VY K D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-D 84
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 27 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIA 84
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAPLTITLVREEVIDFSKPFMSLGISIMI 113
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 26 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGCRDADTKIWNGMVGELVYGKA-DIA 83
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 84 IAPLTITLVREEVIDFSKPFMSLGISIMI 112
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 26 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIA 83
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 84 IAPLTITLVREEVIDFSKPFMSLGISIMI 112
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 26 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIA 83
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 84 IAPLTITLVREEVIDFSKPFMSLGISIMI 112
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 27 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIA 84
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAPLTITLVREEVIDFSKPFMSLGISIMI 113
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-DIA 86
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 486 RYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEY 545
+Y GF ++L+ + + Y+ P D + LI + + D A+ +TI R +
Sbjct: 44 KYVGFDLDLWAEIAKGAGWT--YKIQPMD--FAGLIPALQTQNIDVALSGMTIKEERRKA 99
Query: 546 VEFTQPYAESGFSMIVPA 563
++F+ PY +SG + +V A
Sbjct: 100 IDFSDPYYDSGLAAMVQA 117
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG Y + NG VY K D
Sbjct: 39 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDADTKIWNGMVGELVYGKA-D 96
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 97 IAIAPLTITLVREEVIDFSKPFMSLGISIMI 127
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N RY+G+ ++L + H + V DG Y + NG VY K D A
Sbjct: 29 NERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKYGARDEDTKIWNGMVGELVYGKA-DIA 86
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 87 IAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 459 VPTRTFFEKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGV 516
+ T E FV+ + D L GN R++G+ I+L + + L + V DG
Sbjct: 7 IVTTLLEEPFVMFRKSDRTLYGND-----RFEGYCIDLLKELAHILGFSYEIRLV-EDGK 60
Query: 517 Y---DD------LINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
Y DD ++ + D D AV LTI R + ++F++P+ G S++
Sbjct: 61 YGAQDDKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSIL 113
>pdb|3EWQ|A Chain A, Hcov-229e Nsp3 Adrp Domain
pdb|3EWR|A Chain A, Complex Of Substrate Adp-Ribose With Hcov-229e Nsp3 Adrp
Domain
Length = 168
Score = 36.6 bits (83), Expect = 0.056, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 359 QMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKK 394
Q LS + GL+GK++ G ++ D+LRI NVVG +
Sbjct: 59 QRLSKEHIGLAGKVKVGTGVMVECDSLRIFNVVGPR 94
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 466 EKFVVIK--DDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVY---DD- 519
E FV+ + D L GN R++G+ I+L + + L + V DG Y DD
Sbjct: 16 EPFVMFRKSDRTLYGND-----RFEGYCIDLLKELAHILGFSYEIRLV-EDGKYGAQDDK 69
Query: 520 -----LINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMI 560
++ + D D AV LTI R + ++F++P+ G S++
Sbjct: 70 GQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSIL 115
>pdb|3EJG|A Chain A, Crystal Structure Of Hcov-229e X-Domain
Length = 193
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 359 QMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKK 394
Q LS + GL+GK++ G ++ D+LRI NVVG +
Sbjct: 86 QRLSKEHIGLAGKVKVGTGVMVECDSLRIFNVVGPR 121
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 455 MRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHD 514
+RIGV F + D S + G+ ++L + D + + + P +
Sbjct: 10 LRIGVIESVPFTIVANVID-----TSGRNTTKLTGYVLDLIEYLRDKMGFVADVQLAPPN 64
Query: 515 GVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
Y L+ + + YD A+GD+T+ R E V F+ +++ +++
Sbjct: 65 TSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILM 111
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFV---------PHDGVYDDLINGVYDKTYDAA 532
+ N RY+G+ ++L + H+ V P +++ ++ + D A
Sbjct: 24 EGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIA 83
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
V LTI R E ++F++P+ G S+++
Sbjct: 84 VAPLTITLVREEVIDFSKPFMSLGISIMI 112
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFV---------PHDGVYDDLINGVYDKTYDAA 532
+ N RY+G+ ++L + H+ V P +++ ++ + D A
Sbjct: 24 EGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIA 83
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
V LTI R E ++F++P+ G S+++
Sbjct: 84 VAPLTITLVREEVIDFSKPFMSLGISIMI 112
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFV---------PHDGVYDDLINGVYDKTYDAAVG 534
N RY+G+ ++L + H+ V P +++ ++ + D AV
Sbjct: 26 NERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVA 85
Query: 535 DLTILGNRTEYVEFTQPYAESGFSMIV 561
LTI R E ++F++P+ G S+++
Sbjct: 86 PLTITLVREEVIDFSKPFMSLGISIMI 112
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N +Y+G+ ++L + H+ VP DG Y + NG VY K + A
Sbjct: 25 NDKYEGYCVDLASEIAKHIGIKYKIAIVP-DGKYGARDADTKIWNGMVGELVYGKA-EIA 82
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 83 IAPLTITLVREEVIDFSKPFMSLGISIMI 111
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFV---------PHDGVYDDLINGVYDKTYDAAVG 534
N RY+G+ ++L + H+ V P +++ ++ + D AV
Sbjct: 26 NERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVA 85
Query: 535 DLTILGNRTEYVEFTQPYAESGFSMIV 561
LTI R E ++F++P+ G S+++
Sbjct: 86 PLTITLVREEVIDFSKPFMSLGISIMI 112
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 484 NLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYDAA 532
N +Y+G+ ++L + H+ VP DG Y + NG VY K + A
Sbjct: 25 NDKYEGYCVDLASEIAKHIGIKYKIAIVP-DGKYGARDADTKIWNGMVGELVYGKA-EIA 82
Query: 533 VGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ LTI R E ++F++P+ G S+++
Sbjct: 83 IAPLTITLVREEVIDFSKPFMSLGISIMI 111
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N +Y+G+ ++L + H+ VP DG Y + NG VY K +
Sbjct: 25 EGNDKYEGYCVDLASEIAKHIGIKYKIAIVP-DGKYGARDADTKIWNGMVGELVYGKA-E 82
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 83 IAIAPLTITLVREEVIDFSKPFMSLGISIMI 113
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 97 KVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMK 156
K +I G A VA +AS +P+LS A A + +L R+A ++ +
Sbjct: 126 KPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGE 185
Query: 157 CIADLARKYNWRRVAAIYEDN 177
+ L R ++W R A +Y D+
Sbjct: 186 MMLALFRHHHWSRAALVYSDD 206
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 97 KVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMK 156
K +I G A VA +AS +P+LS A A + +L R+A ++ +
Sbjct: 127 KPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGE 186
Query: 157 CIADLARKYNWRRVAAIYEDN 177
+ L R ++W R A +Y D+
Sbjct: 187 MMLALFRHHHWSRAALVYSDD 207
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 97 KVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMK 156
K +I G A VA +AS +P+LS A A + +L R+A ++ +
Sbjct: 84 KPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGE 143
Query: 157 CIADLARKYNWRRVAAIYEDN 177
+ L R ++W R A +Y D+
Sbjct: 144 MMLALFRHHHWSRAALVYSDD 164
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYD------DLING-----VYDKTYD 530
+ N RY+G+ ++L + H + V DG + + NG VY K D
Sbjct: 27 EGNERYEGYCVDLAAEIAKHCGFKYKLTIV-GDGKWGARDADTKIWNGMVGELVYGKA-D 84
Query: 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
A+ LTI R E ++F++P+ G S+++
Sbjct: 85 IAIAPLTITLVREEVIDFSKPFMSLGISIMI 115
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Query: 466 EKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVP--------HDGVY 517
E FV++ ++ L K +Y GFSI++ + ++L ++ P DG +
Sbjct: 13 EPFVMVSENVLG-----KPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTW 67
Query: 518 DDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ L+ + K D + LTI +R V+FT Y + +++
Sbjct: 68 NGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLL 111
>pdb|3I45|A Chain A, Crystal Structure Of Putative Twin-Arginine Translocation
Pathway Signal Protein From Rhodospirillum Rubrum Atcc
11170
Length = 387
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 56 KIAVQNFNSDSR---NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG 103
++AV+ N+ L + RD DP +A TAAQEL+ + V +AG
Sbjct: 29 QLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAG 79
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 466 EKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVP--------HDGVY 517
E FV + ++ L K +Y GFSI++ + ++L ++ P DG +
Sbjct: 13 EPFVXVSENVLG-----KPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTW 67
Query: 518 DDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+ L+ + K D + LTI +R V+FT Y + +++
Sbjct: 68 NGLVGELVFKRADIGISALTITPDRENVVDFTTRYXDYSVGVLL 111
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 99/253 (39%), Gaps = 24/253 (9%)
Query: 31 IEEVTKIGAIVD----ANSQMGKQAITAMKIAVQNFNSDSR---NHKLSLQI-RDHNRDP 82
+ V +IG I + N+Q+ A + + N + N L+ I R H D
Sbjct: 1 MPHVIRIGGIFEYADGPNAQVMNAEEHAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDS 60
Query: 83 FQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWP 142
F+A A + + V I G T V I + ++VP + PL +
Sbjct: 61 FEATKKACDQL-ALGVVAIFGPSQGSCTNAVQSICNALEVPHIQLRWKH-HPLD--NKDT 116
Query: 143 YLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQ 202
+ + + + + I DL + WR +Y+ DS L L E + S I+
Sbjct: 117 FYVNLYPDYASLSHAILDLVQSLKWRSATVVYD------DSTGLIRLQELIMAPSRYNIR 170
Query: 203 SRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262
++ PI SD + E+K+ ++ + I+ S M + +A MG++ +
Sbjct: 171 LKIRQLPID--SDDSRPLLKEMKRGREFR----IIFDCSHTMAAQILKQAMAMGMMTEYY 224
Query: 263 VWIVTNTVANALD 275
+I T ALD
Sbjct: 225 HFIFTTLDLYALD 237
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 489 GFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEF 548
GF I++ V + + + + +D LI + K +DA + + + R + V F
Sbjct: 30 GFDIDVANAVCKEMQAECSFT----NQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSF 85
Query: 549 TQPYAESGFSMIV 561
+QPY E G S +V
Sbjct: 86 SQPYYE-GLSAVV 97
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 112/289 (38%), Gaps = 60/289 (20%)
Query: 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISD 215
+ I DL + + W+ V +Y+ DS L L E ++ S ++ ++ P +D
Sbjct: 127 RAILDLVQFFKWKTVTVVYD------DSTGLIRLQELIKAPSRYNLRLKIRQLP----AD 176
Query: 216 PKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALD 275
K+A L K + ++ S +M + +A MG++ + +I T ALD
Sbjct: 177 TKDA--KPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALD 234
Query: 276 ------------------SLNTTVISSMEGTLGIKXXXXXXXXPYKEFSALFRRNFTSEY 317
+ NT V S +E K P K S L
Sbjct: 235 VEPYRYSGVNMTGFRILNTENTQVSSIIE-----KWSMERLQAPPKPDSGLL-------- 281
Query: 318 PEEDHFHPSIHALRAHDSIKIITEAIGR--------LNYNISSPEMLLRQMLS----SDF 365
D F + AL +D++ +++ A+ + L N P + +S + +
Sbjct: 282 ---DGFMTTDAAL-MYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHW 337
Query: 366 SGLSGKIRFKDGELLNAD-TLRIVNVVGKKYKELDFWLPNFGFSKTSSK 413
GL+G+I F L D L ++++ + +++ W P G + T S+
Sbjct: 338 EGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQ 386
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 514 DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+G+ +L++G D V LTI R +Y+EF++P+ G +++V
Sbjct: 107 NGMMGELLSG----QADMIVAPLTINNERAQYIEFSKPFKYQGLTILV 150
>pdb|3K4U|A Chain A, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|B Chain B, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|C Chain C, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|D Chain D, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|E Chain E, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|F Chain F, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
Length = 245
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGN 541
DK GF ++L R L + VP +D LI G+ + +D + TI
Sbjct: 22 DKKGNVIGFDVDLAREXAKAXGVKL--KLVPTS--WDGLIPGLVTEKFDIIISGXTISQE 77
Query: 542 RTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVT 584
R V F +PY G S++V E+ + E+ +VT
Sbjct: 78 RNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVT 120
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 514 DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIV 561
+G+ +L++G D V LTI R +Y+EF++P+ G +++V
Sbjct: 107 NGMMGELLSG----QADMIVAPLTINTERAQYIEFSKPFKYQGLTILV 150
>pdb|3KZG|A Chain A, Crystal Structure Of An Arginine 3rd Transport System
Periplasmic Binding Protein From Legionella Pneumophila
pdb|3KZG|B Chain B, Crystal Structure Of An Arginine 3rd Transport System
Periplasmic Binding Protein From Legionella Pneumophila
pdb|3KZG|C Chain C, Crystal Structure Of An Arginine 3rd Transport System
Periplasmic Binding Protein From Legionella Pneumophila
pdb|3KZG|D Chain D, Crystal Structure Of An Arginine 3rd Transport System
Periplasmic Binding Protein From Legionella Pneumophila
Length = 237
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 489 GFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEF 548
GF I+L + + L+ +E ++DDL + ++ D + I R ++ F
Sbjct: 28 GFDIDLXQEICRRLHATCTFEAY----IFDDLFPALKNREVDLVIASXIITDERKKHFIF 83
Query: 549 TQPYAESGFSMIVPAKQEESTW 570
+ PY ES I + ST+
Sbjct: 84 SLPYXESNSQYITTVDSKISTF 105
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 489 GFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLING--------VYDKTYDAAVGDLTILG 540
G+ I+L + + +N+D ++ DG Y NG + T + AV +I
Sbjct: 70 GYCIDLLEQLAEDMNFDFDL-YIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINT 128
Query: 541 NRTEYVEFTQPYAESGFSMIVPAKQEE 567
R++ ++FT P+ + ++V + E
Sbjct: 129 ARSQVIDFTSPFFSTSLGILVRTRGTE 155
>pdb|3I6V|A Chain A, Crystal Structure Of A Periplasmic HisGLUGLNARGOPINE
FAMILY- Binding Protein From Silicibacter Pomeroyi In
Complex With Lysine
Length = 232
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 488 DGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVE 547
DGF EL + L E+V +D +D +I + YD + ++I R E ++
Sbjct: 28 DGFERELGDELCKRAG--LTCEWVKND--WDSIIPNLVSGNYDTIIAGMSITDERDEVID 83
Query: 548 FTQPY 552
FTQ Y
Sbjct: 84 FTQNY 88
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 111/289 (38%), Gaps = 60/289 (20%)
Query: 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISD 215
+ I DL + + W+ V +Y+ DS L L E ++ S ++ ++ P +D
Sbjct: 127 RAILDLVQFFKWKTVTVVYD------DSTGLIRLQELIKAPSRYNLRLKIRQLP----AD 176
Query: 216 PKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALD 275
K+A L K + ++ S +M + +A M ++ + +I T ALD
Sbjct: 177 TKDA--KPLLKEMKRGKEFHVIFDCSHEMAAGILKQALNMSMMTEYYHYIFTTLDLFALD 234
Query: 276 ------------------SLNTTVISSMEGTLGIKXXXXXXXXPYKEFSALFRRNFTSEY 317
+ NT V S +E K P K S L
Sbjct: 235 VEPYRYSGVNMTGFRILNTENTQVSSIIE-----KWSMERLQAPPKPDSGLL-------- 281
Query: 318 PEEDHFHPSIHALRAHDSIKIITEAIGR--------LNYNISSPEMLLRQMLS----SDF 365
D F + AL +D++ +++ A+ + L N P + +S + +
Sbjct: 282 ---DGFMTTDAAL-MYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHW 337
Query: 366 SGLSGKIRFKDGELLNAD-TLRIVNVVGKKYKELDFWLPNFGFSKTSSK 413
GL+G+I F L D L ++++ + +++ W P G + T S+
Sbjct: 338 EGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQ 386
>pdb|2YJP|A Chain A, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|B Chain B, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
pdb|2YJP|C Chain C, Crystal Structure Of The Solute Receptors For L-Cysteine
Of Neisseria Gonorrhoeae
Length = 291
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 17/140 (12%)
Query: 482 DKNLRYDGFSIELFR-LVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILG 540
D N + GF +E+ + L D L EFV + + + V D + + T
Sbjct: 72 DANGKNQGFDVEIAKDLAKDLLGSPDKVEFVLTEAA--NRVEYVRSGKVDLILANFTQTP 129
Query: 541 NRTEYVEFTQPYAESGFSMIVP--------AKQEESTWMFTKPFTWEMWMVTAASFIYTM 592
R E V+F PY + ++ P A+ ++ T + K T + + F +
Sbjct: 130 ERAEAVDFADPYMKVALGVVSPKNKPITDMAQLKDQTLLVNKGTTADAF------FTKSH 183
Query: 593 FIVWLLEHQSNPEFRGTLKD 612
V LL+ N E LKD
Sbjct: 184 PEVKLLKFDQNTETFDALKD 203
>pdb|3HV1|A Chain A, Crystal Structure Of A Polar Amino Acid Abc Uptake
Transporter Substrate Binding Protein From Streptococcus
Thermophilus
pdb|3HV1|B Chain B, Crystal Structure Of A Polar Amino Acid Abc Uptake
Transporter Substrate Binding Protein From Streptococcus
Thermophilus
Length = 268
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 482 DKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGN 541
+K+ Y GF I+L V D+ ++ + D +L NG D ++ ++
Sbjct: 38 EKDGSYIGFDIDLANAVFKLYGIDVEWQAIDWDXKETELKNGTIDLIWNG----YSVTDE 93
Query: 542 RTEYVEFTQPY 552
R + +FT+PY
Sbjct: 94 RKQSADFTEPY 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,219,959
Number of Sequences: 62578
Number of extensions: 864639
Number of successful extensions: 1993
Number of sequences better than 100.0: 136
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1900
Number of HSP's gapped (non-prelim): 161
length of query: 771
length of database: 14,973,337
effective HSP length: 106
effective length of query: 665
effective length of database: 8,340,069
effective search space: 5546145885
effective search space used: 5546145885
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)