Query 004136
Match_columns 771
No_of_seqs 341 out of 3143
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 15:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 1.8E-84 6.1E-89 776.0 56.3 670 34-770 2-733 (823)
2 4f11_A Gamma-aminobutyric acid 100.0 2E-47 7E-52 421.2 35.4 371 31-446 11-426 (433)
3 3o21_A Glutamate receptor 3; p 100.0 1.6E-46 5.4E-51 406.7 39.3 353 32-410 3-380 (389)
4 3hsy_A Glutamate receptor 2; l 100.0 1.7E-45 5.8E-50 397.3 33.9 351 34-409 2-373 (376)
5 1jdp_A NPR-C, atrial natriuret 100.0 1.8E-44 6.3E-49 398.4 40.3 357 32-406 7-397 (441)
6 3om0_A Glutamate receptor, ion 100.0 5.8E-45 2E-49 396.0 34.2 357 33-410 3-381 (393)
7 3h6g_A Glutamate receptor, ion 100.0 1.3E-44 4.3E-49 393.8 36.5 360 32-410 2-383 (395)
8 3saj_A Glutamate receptor 1; r 100.0 8.4E-45 2.9E-49 393.2 34.7 350 30-409 6-376 (384)
9 4gpa_A Glutamate receptor 4; P 100.0 5.8E-44 2E-48 388.1 38.8 351 32-410 3-378 (389)
10 1dp4_A Atrial natriuretic pept 100.0 1.5E-44 5E-49 398.8 33.5 358 33-406 1-399 (435)
11 2e4u_A Metabotropic glutamate 100.0 1.6E-42 5.3E-47 392.9 40.3 378 32-448 12-486 (555)
12 3qek_A NMDA glutamate receptor 100.0 5.1E-43 1.8E-47 379.4 33.0 320 32-403 3-369 (384)
13 3sm9_A Mglur3, metabotropic gl 100.0 2.6E-42 8.7E-47 382.6 38.4 355 32-402 11-462 (479)
14 3ks9_A Mglur1, metabotropic gl 100.0 6.4E-41 2.2E-45 373.1 38.5 359 31-403 14-475 (496)
15 3mq4_A Mglur7, metabotropic gl 100.0 3.8E-42 1.3E-46 382.4 28.6 359 32-402 14-467 (481)
16 3i45_A Twin-arginine transloca 100.0 7.7E-39 2.6E-43 347.2 32.4 350 32-408 3-364 (387)
17 4f06_A Extracellular ligand-bi 100.0 2.2E-38 7.5E-43 341.1 32.6 350 32-402 3-361 (371)
18 3h5l_A Putative branched-chain 100.0 1.2E-38 4.1E-43 349.5 29.8 338 32-395 12-388 (419)
19 3td9_A Branched chain amino ac 100.0 5.1E-38 1.8E-42 338.1 32.8 343 32-405 14-364 (366)
20 4gnr_A ABC transporter substra 100.0 9.7E-38 3.3E-42 334.1 33.5 339 31-402 4-352 (353)
21 3i09_A Periplasmic branched-ch 100.0 2E-37 6.7E-42 334.7 33.6 335 32-393 2-341 (375)
22 3ipc_A ABC transporter, substr 100.0 6.6E-38 2.3E-42 336.0 29.2 344 33-405 1-353 (356)
23 3n0w_A ABC branched chain amin 100.0 2.1E-37 7.1E-42 335.0 32.1 337 31-394 3-346 (379)
24 3hut_A Putative branched-chain 100.0 5.7E-37 2E-41 328.9 33.5 345 32-404 2-354 (358)
25 4evq_A Putative ABC transporte 100.0 7.2E-37 2.5E-41 330.4 33.8 346 32-404 14-364 (375)
26 1usg_A Leucine-specific bindin 100.0 6.3E-37 2.1E-41 327.0 31.2 338 33-398 1-345 (346)
27 4eyg_A Twin-arginine transloca 100.0 2.9E-36 9.8E-41 324.8 33.3 345 32-403 4-359 (368)
28 3lkb_A Probable branched-chain 100.0 9E-37 3.1E-41 331.6 26.2 351 32-409 5-380 (392)
29 3qel_B Glutamate [NMDA] recept 100.0 1.4E-36 4.7E-41 324.3 26.6 321 32-403 2-351 (364)
30 3n0x_A Possible substrate bind 100.0 5E-36 1.7E-40 323.3 30.0 331 32-392 2-346 (374)
31 3eaf_A ABC transporter, substr 100.0 8.7E-36 3E-40 323.6 32.1 342 33-405 3-373 (391)
32 3lop_A Substrate binding perip 100.0 1.3E-35 4.3E-40 319.2 30.3 340 32-397 3-355 (364)
33 3sg0_A Extracellular ligand-bi 100.0 4.1E-35 1.4E-39 318.0 22.3 339 32-398 25-385 (386)
34 1pea_A Amidase operon; gene re 100.0 5.1E-33 1.7E-37 301.1 33.0 347 31-401 4-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 4.8E-33 1.6E-37 298.9 25.4 337 32-398 5-361 (362)
36 2h4a_A YRAM (HI1655); perplasm 100.0 8E-29 2.8E-33 258.2 18.9 310 36-398 2-317 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 100.0 2.2E-28 7.7E-33 257.9 19.6 314 35-401 3-322 (327)
38 1yae_A Glutamate receptor, ion 99.9 6.1E-23 2.1E-27 214.9 13.4 232 445-769 5-260 (312)
39 1pb7_A N-methyl-D-aspartate re 99.9 3.3E-22 1.1E-26 206.9 9.7 198 452-769 40-259 (292)
40 4h5g_A Amino acid ABC superfam 99.8 2E-21 6.7E-26 195.6 11.4 198 451-771 10-211 (243)
41 2rc8_A Glutamate [NMDA] recept 99.8 3.4E-21 1.2E-25 199.7 12.8 177 486-769 67-261 (294)
42 3g3k_A Glutamate receptor, ion 99.8 9E-21 3.1E-25 192.7 14.8 203 451-769 2-226 (259)
43 4gvo_A LMO2349 protein; struct 99.8 8.7E-21 3E-25 190.8 12.6 197 451-771 7-209 (243)
44 2a5s_A N-methyl-D-aspartate re 99.8 9.4E-21 3.2E-25 195.2 9.5 174 486-769 56-252 (284)
45 3k4u_A Binding component of AB 99.8 1.1E-19 3.8E-24 182.9 14.5 197 451-770 3-201 (245)
46 3kzg_A Arginine 3RD transport 99.8 1.3E-19 4.3E-24 181.5 14.8 191 453-770 3-203 (237)
47 4f3p_A Glutamine-binding perip 99.8 8.2E-19 2.8E-23 177.1 19.8 193 450-769 21-215 (249)
48 3mpk_A Virulence sensor protei 99.8 5.6E-19 1.9E-23 180.3 17.8 195 450-770 29-226 (267)
49 4dz1_A DALS D-alanine transpor 99.8 1.4E-18 4.7E-23 176.5 19.7 195 451-768 27-226 (259)
50 3kbr_A Cyclohexadienyl dehydra 99.8 1.8E-19 6.1E-24 180.6 12.3 199 447-770 9-210 (239)
51 2v3u_A Glutamate receptor delt 99.8 8.3E-19 2.8E-23 178.7 16.4 201 451-769 1-231 (265)
52 3i6v_A Periplasmic His/Glu/Gln 99.8 4.4E-19 1.5E-23 177.0 13.5 186 451-770 3-190 (232)
53 3del_B Arginine binding protei 99.8 7.7E-19 2.6E-23 176.3 14.9 190 451-770 9-205 (242)
54 3hv1_A Polar amino acid ABC up 99.8 6.6E-19 2.3E-23 179.9 12.7 196 450-770 18-221 (268)
55 3tql_A Arginine-binding protei 99.8 1.4E-18 4.6E-23 172.4 13.8 192 453-770 2-201 (227)
56 3h7m_A Sensor protein; histidi 99.8 5E-18 1.7E-22 169.3 17.7 194 450-770 8-203 (234)
57 1ii5_A SLR1257 protein; membra 99.8 6.5E-18 2.2E-22 168.3 18.4 191 452-769 3-199 (233)
58 1wdn_A GLNBP, glutamine bindin 99.8 6.2E-18 2.1E-22 167.5 17.8 192 452-770 2-195 (226)
59 4eq9_A ABC transporter substra 99.7 5.7E-18 1.9E-22 170.3 13.4 195 451-770 6-208 (246)
60 2y7i_A STM4351; arginine-bindi 99.7 8.1E-18 2.8E-22 167.2 14.1 191 451-770 4-201 (229)
61 1mqi_A Glutamate receptor 2; G 99.7 9.8E-18 3.4E-22 170.6 14.7 201 452-769 3-229 (263)
62 1lst_A Lysine, arginine, ornit 99.7 4.8E-18 1.6E-22 170.1 11.7 195 452-770 3-205 (239)
63 2iee_A ORF2, probable ABC tran 99.7 2.9E-18 1E-22 175.4 9.7 201 445-770 13-219 (271)
64 2q88_A EHUB, putative ABC tran 99.7 2.3E-17 8E-22 167.1 13.4 198 450-770 10-213 (257)
65 1xt8_A Putative amino-acid tra 99.7 8E-17 2.8E-21 166.6 15.9 192 451-770 42-238 (292)
66 3qax_A Probable ABC transporte 99.7 6.5E-17 2.2E-21 164.8 14.3 191 451-770 29-226 (268)
67 2pvu_A ARTJ; basic amino acid 99.7 1.2E-16 4.2E-21 163.3 16.2 194 450-771 39-236 (272)
68 2yjp_A Putative ABC transporte 99.7 9.5E-17 3.2E-21 165.9 14.5 191 452-770 54-249 (291)
69 2pyy_A Ionotropic glutamate re 99.7 1.9E-16 6.6E-21 156.9 15.6 191 453-769 3-195 (228)
70 4i62_A Amino acid ABC transpor 99.7 8.7E-17 3E-21 164.0 13.2 194 451-770 37-237 (269)
71 2vha_A Periplasmic binding tra 99.7 1.4E-16 4.9E-21 164.3 13.8 196 450-770 14-221 (287)
72 2yln_A Putative ABC transporte 99.7 3.1E-16 1.1E-20 161.3 13.8 191 451-770 55-250 (283)
73 2v25_A Major cell-binding fact 99.6 2.2E-15 7.4E-20 152.6 6.8 191 451-770 36-234 (259)
74 2ozz_A Hypothetical protein YH 99.0 1.5E-09 5.1E-14 104.3 10.0 158 486-770 29-201 (231)
75 3ksm_A ABC-type sugar transpor 98.5 4.7E-06 1.6E-10 84.4 18.3 210 35-269 1-222 (276)
76 2h3h_A Sugar ABC transporter, 98.5 7.8E-06 2.7E-10 84.6 19.7 209 35-269 2-217 (313)
77 3n5l_A Binding protein compone 98.4 1.9E-06 6.4E-11 88.9 14.4 166 492-769 24-214 (310)
78 2rjo_A Twin-arginine transloca 98.4 1.8E-05 6.3E-10 82.5 22.1 213 33-267 4-230 (332)
79 3p7i_A PHND, subunit of alkylp 98.4 2.3E-06 8E-11 88.4 12.7 188 451-769 12-223 (321)
80 3brs_A Periplasmic binding pro 98.4 2.1E-05 7.3E-10 80.1 19.8 212 33-269 4-225 (289)
81 3l49_A ABC sugar (ribose) tran 98.3 2.3E-05 8E-10 79.9 19.9 212 33-269 4-225 (291)
82 3o74_A Fructose transport syst 98.3 2.4E-05 8.2E-10 78.9 17.7 210 35-269 3-216 (272)
83 3o1i_D Periplasmic protein TOR 98.3 1.2E-05 4.2E-10 82.5 15.7 206 32-258 3-218 (304)
84 2qh8_A Uncharacterized protein 98.3 2.5E-05 8.5E-10 80.3 17.7 187 32-242 6-203 (302)
85 2fn9_A Ribose ABC transporter, 98.3 3.3E-05 1.1E-09 78.7 18.5 206 35-268 3-224 (290)
86 3brq_A HTH-type transcriptiona 98.3 1.8E-05 6.3E-10 80.9 16.5 212 32-269 17-237 (296)
87 1dbq_A Purine repressor; trans 98.2 5.3E-05 1.8E-09 77.1 19.8 212 33-269 6-224 (289)
88 1tjy_A Sugar transport protein 98.2 3.7E-05 1.3E-09 79.5 18.8 207 36-269 5-223 (316)
89 2x7x_A Sensor protein; transfe 98.2 4.4E-05 1.5E-09 79.3 19.5 212 32-269 4-223 (325)
90 3rot_A ABC sugar transporter, 98.2 2E-05 6.8E-10 80.8 16.2 205 34-258 3-213 (297)
91 3d02_A Putative LACI-type tran 98.2 7.5E-05 2.6E-09 76.6 20.5 212 33-268 3-223 (303)
92 3h75_A Periplasmic sugar-bindi 98.2 0.00018 6E-09 75.6 23.3 219 34-269 3-242 (350)
93 2qu7_A Putative transcriptiona 98.2 1.9E-05 6.4E-10 80.5 15.2 214 32-269 6-224 (288)
94 3lft_A Uncharacterized protein 98.2 0.00012 4.2E-09 74.7 21.1 200 34-257 2-210 (295)
95 2iks_A DNA-binding transcripti 98.2 7.4E-05 2.5E-09 76.3 19.2 210 33-269 19-234 (293)
96 3c3k_A Alanine racemase; struc 98.1 9.2E-05 3.2E-09 75.2 18.7 207 33-269 7-221 (285)
97 3l6u_A ABC-type sugar transpor 98.1 7.2E-05 2.4E-09 76.3 17.7 212 32-269 6-229 (293)
98 2fvy_A D-galactose-binding per 98.1 0.00013 4.5E-09 74.9 19.8 204 35-256 3-226 (309)
99 2fep_A Catabolite control prot 98.1 9.9E-05 3.4E-09 75.2 18.5 213 31-269 13-232 (289)
100 3m9w_A D-xylose-binding peripl 98.1 0.00018 6.3E-09 74.1 20.7 208 35-266 3-220 (313)
101 3g1w_A Sugar ABC transporter; 98.1 0.00025 8.4E-09 72.8 21.4 213 34-269 4-222 (305)
102 2ioy_A Periplasmic sugar-bindi 98.1 0.00019 6.6E-09 72.7 20.4 209 35-269 2-217 (283)
103 3gbv_A Putative LACI-family tr 98.1 0.00012 4E-09 75.1 18.7 214 32-269 6-233 (304)
104 2vk2_A YTFQ, ABC transporter p 98.1 0.00012 4.2E-09 75.1 18.5 213 34-269 2-228 (306)
105 3egc_A Putative ribose operon 98.1 5.8E-05 2E-09 77.0 15.7 212 32-269 6-223 (291)
106 3lkv_A Uncharacterized conserv 98.0 0.00011 3.8E-09 75.2 16.4 203 32-257 6-221 (302)
107 8abp_A L-arabinose-binding pro 98.0 0.00016 5.6E-09 74.1 17.8 216 34-270 2-234 (306)
108 1jx6_A LUXP protein; protein-l 98.0 0.00016 5.3E-09 75.7 17.5 219 32-269 41-268 (342)
109 2o20_A Catabolite control prot 98.0 0.00021 7.3E-09 74.3 17.7 211 33-269 62-276 (332)
110 3dbi_A Sugar-binding transcrip 97.9 7E-05 2.4E-09 78.3 13.8 214 33-269 60-279 (338)
111 3bbl_A Regulatory protein of L 97.9 0.00015 5.3E-09 73.6 15.5 211 33-269 3-225 (287)
112 3clk_A Transcription regulator 97.9 9E-05 3.1E-09 75.5 13.7 210 33-268 7-221 (290)
113 3d8u_A PURR transcriptional re 97.9 0.00022 7.6E-09 71.8 16.3 209 34-269 3-218 (275)
114 3k4h_A Putative transcriptiona 97.9 0.00028 9.5E-09 71.8 16.9 215 32-269 6-229 (292)
115 3gyb_A Transcriptional regulat 97.9 8.4E-05 2.9E-09 75.2 12.7 206 33-269 4-213 (280)
116 3uif_A Sulfonate ABC transport 97.9 5.6E-05 1.9E-09 79.3 11.8 137 494-739 35-178 (348)
117 2h0a_A TTHA0807, transcription 97.9 0.0001 3.5E-09 74.4 13.0 207 36-268 1-216 (276)
118 2rgy_A Transcriptional regulat 97.8 6.9E-05 2.4E-09 76.4 11.2 211 33-269 7-226 (290)
119 3k9c_A Transcriptional regulat 97.8 0.0011 3.8E-08 67.2 20.2 209 33-269 11-222 (289)
120 2hsg_A Glucose-resistance amyl 97.8 0.00029 1E-08 73.3 15.9 211 33-269 59-276 (332)
121 3ctp_A Periplasmic binding pro 97.8 0.00013 4.3E-09 76.0 13.0 205 32-268 58-267 (330)
122 3kke_A LACI family transcripti 97.8 0.00039 1.3E-08 71.2 16.5 211 33-269 14-234 (303)
123 3hcw_A Maltose operon transcri 97.8 0.00052 1.8E-08 70.0 17.3 213 32-269 5-229 (295)
124 1gud_A ALBP, D-allose-binding 97.8 0.0024 8.2E-08 64.7 21.8 214 36-269 3-228 (288)
125 1qpz_A PURA, protein (purine n 97.8 0.00074 2.5E-08 70.4 18.4 212 33-269 57-275 (340)
126 3tb6_A Arabinose metabolism tr 97.8 0.00024 8E-09 72.6 14.0 210 35-267 16-236 (298)
127 3jy6_A Transcriptional regulat 97.8 0.00062 2.1E-08 68.6 16.9 210 32-269 5-218 (276)
128 3gv0_A Transcriptional regulat 97.8 0.0004 1.4E-08 70.6 15.4 213 32-268 6-224 (288)
129 3qk7_A Transcriptional regulat 97.7 0.00042 1.4E-08 70.6 15.1 212 33-269 5-224 (294)
130 2dri_A D-ribose-binding protei 97.7 0.002 6.9E-08 64.6 19.8 208 36-269 3-216 (271)
131 1byk_A Protein (trehalose oper 97.7 0.00099 3.4E-08 66.2 17.3 200 35-269 3-206 (255)
132 3e61_A Putative transcriptiona 97.7 0.00078 2.7E-08 67.9 16.6 204 33-268 7-213 (277)
133 3huu_A Transcription regulator 97.7 0.00059 2E-08 69.9 15.3 208 33-269 21-239 (305)
134 3kjx_A Transcriptional regulat 97.7 0.0011 3.7E-08 69.3 17.2 211 32-268 66-283 (344)
135 3uug_A Multiple sugar-binding 97.6 0.001 3.4E-08 69.0 16.6 209 33-260 2-231 (330)
136 3bil_A Probable LACI-family tr 97.6 0.0014 4.8E-08 68.6 17.7 209 33-269 65-278 (348)
137 3e3m_A Transcriptional regulat 97.6 0.002 7E-08 67.5 18.9 213 33-268 69-286 (355)
138 3h5o_A Transcriptional regulat 97.6 0.0016 5.5E-08 67.8 17.9 208 33-268 61-275 (339)
139 3g85_A Transcriptional regulat 97.6 0.00054 1.9E-08 69.5 13.9 211 32-268 9-224 (289)
140 3hs3_A Ribose operon repressor 97.6 0.0014 4.7E-08 66.1 16.2 204 32-269 8-215 (277)
141 3cs3_A Sugar-binding transcrip 97.6 0.0017 6E-08 65.3 16.9 199 32-266 6-211 (277)
142 3jvd_A Transcriptional regulat 97.6 0.0025 8.7E-08 66.1 18.4 203 33-269 63-268 (333)
143 2x26_A Periplasmic aliphatic s 97.5 0.00042 1.4E-08 71.1 11.9 69 673-744 97-169 (308)
144 3ksx_A Nitrate transport prote 97.5 0.001 3.5E-08 68.8 14.8 70 673-744 123-195 (324)
145 3qsl_A Putative exported prote 97.5 0.00052 1.8E-08 71.6 12.1 138 498-745 58-205 (346)
146 4fe7_A Xylose operon regulator 97.5 0.0031 1.1E-07 67.6 18.5 213 32-269 23-240 (412)
147 2fqx_A Membrane lipoprotein TM 97.5 0.0085 2.9E-07 61.6 20.4 211 33-269 3-224 (318)
148 3ix1_A N-formyl-4-amino-5-amin 97.5 0.00041 1.4E-08 71.0 10.4 78 486-566 16-97 (302)
149 3miz_A Putative transcriptiona 97.4 0.00036 1.2E-08 71.4 9.7 214 32-268 11-233 (301)
150 2hqb_A Transcriptional activat 97.3 0.026 8.8E-07 57.2 22.1 196 33-256 4-204 (296)
151 1jye_A Lactose operon represso 97.3 0.015 5E-07 60.7 19.6 209 33-269 60-275 (349)
152 3un6_A Hypothetical protein sa 97.2 0.00045 1.6E-08 72.1 7.4 69 673-746 145-221 (341)
153 3s99_A Basic membrane lipoprot 97.1 0.038 1.3E-06 57.3 20.7 201 32-257 24-230 (356)
154 3qi7_A Putative transcriptiona 97.1 0.023 8E-07 58.3 18.4 220 33-260 11-252 (371)
155 2f5x_A BUGD; periplasmic bindi 97.0 0.027 9.4E-07 57.2 17.9 70 673-744 123-202 (312)
156 2qpq_A Protein BUG27; alpha/be 96.8 0.041 1.4E-06 55.7 17.8 93 673-769 114-239 (301)
157 3h5t_A Transcriptional regulat 96.8 0.0072 2.5E-07 63.6 12.6 214 33-268 67-304 (366)
158 4ddd_A Immunogenic protein; ss 96.7 0.0072 2.5E-07 62.3 11.3 137 486-735 44-203 (327)
159 2ih3_C Voltage-gated potassium 96.5 0.0044 1.5E-07 53.3 6.5 73 591-667 43-117 (122)
160 2dvz_A BUGE, putative exported 96.5 0.079 2.7E-06 53.9 16.9 70 673-744 127-206 (314)
161 2x7q_A Ca3427, possible thiami 96.4 0.064 2.2E-06 55.0 15.8 87 673-766 112-209 (321)
162 2k1e_A Water soluble analogue 96.2 0.0019 6.5E-08 53.7 2.4 74 590-667 21-96 (103)
163 2a9h_A Voltage-gated potassium 96.1 0.015 5.1E-07 52.2 7.8 75 591-669 66-142 (155)
164 3eff_K Voltage-gated potassium 95.8 0.021 7.2E-07 50.4 7.6 70 592-665 23-94 (139)
165 4h33_A LMO2059 protein; bilaye 95.6 0.042 1.4E-06 48.2 8.6 54 613-666 43-98 (137)
166 2g29_A Nitrate transport prote 95.5 0.055 1.9E-06 57.8 11.0 65 677-745 151-222 (417)
167 2zzv_A ABC transporter, solute 95.0 0.074 2.5E-06 55.5 9.5 62 492-553 53-118 (361)
168 1us5_A Putative GLUR0 ligand b 94.9 0.15 5.3E-06 51.8 11.8 59 673-735 123-188 (314)
169 3ouf_A Potassium channel prote 94.6 0.056 1.9E-06 44.1 5.9 58 613-670 32-91 (97)
170 3ldc_A Calcium-gated potassium 94.6 0.15 5.3E-06 39.9 8.2 52 613-664 28-81 (82)
171 2q67_A Potassium channel prote 94.1 0.14 4.9E-06 43.0 7.5 55 613-667 49-105 (114)
172 3ixl_A Amdase, arylmalonate de 93.9 0.58 2E-05 45.3 12.5 134 86-254 56-202 (240)
173 2i49_A Bicarbonate transporter 93.5 0.24 8.3E-06 52.8 9.9 67 676-745 153-230 (429)
174 3jv9_A OXYR, transcriptional r 93.5 3.7 0.00013 38.1 17.6 71 488-566 16-87 (219)
175 2pfy_A Putative exported prote 93.3 0.47 1.6E-05 47.9 11.2 50 492-541 21-72 (301)
176 1p7b_A Integral membrane chann 93.0 0.18 6.1E-06 51.2 7.4 60 611-670 94-155 (333)
177 2hzl_A Trap-T family sorbitol/ 93.0 0.24 8.1E-06 51.7 8.6 51 493-543 53-105 (365)
178 3vou_A ION transport 2 domain 92.8 0.36 1.2E-05 42.8 8.4 53 613-665 52-106 (148)
179 1xl4_A Inward rectifier potass 92.7 0.3 1E-05 49.0 8.4 59 610-668 79-139 (301)
180 4gx0_A TRKA domain protein; me 92.7 0.42 1.4E-05 53.2 10.7 127 613-742 51-186 (565)
181 4esw_A Pyrimidine biosynthesis 92.6 0.58 2E-05 48.2 10.9 64 673-740 103-169 (342)
182 2pfz_A Putative exported prote 92.5 0.54 1.8E-05 47.5 10.3 58 671-737 128-185 (301)
183 1orq_C Potassium channel; volt 91.5 0.4 1.4E-05 46.0 7.7 71 592-666 148-220 (223)
184 1zbm_A Hypothetical protein AF 91.1 0.36 1.2E-05 48.1 7.1 57 677-739 99-157 (280)
185 4ab5_A Transcriptional regulat 90.8 2.8 9.7E-05 39.1 13.0 71 488-566 20-91 (222)
186 3ho7_A OXYR; beta-alpha-barrel 90.6 2.8 9.4E-05 39.6 12.8 71 488-566 23-94 (232)
187 2qks_A KIR3.1-prokaryotic KIR 90.4 0.76 2.6E-05 46.4 8.6 58 613-670 78-137 (321)
188 3pjs_K KCSA, voltage-gated pot 90.3 0.014 4.9E-07 53.2 -3.8 55 612-666 66-122 (166)
189 1atg_A MODA, periplasmic molyb 90.0 0.77 2.6E-05 43.6 8.2 74 489-566 12-91 (231)
190 1sw5_A Osmoprotection protein 89.4 1.3 4.3E-05 44.0 9.4 64 673-739 125-195 (275)
191 1lnq_A MTHK channels, potassiu 89.3 0.22 7.4E-06 51.4 3.7 58 613-670 45-104 (336)
192 3r26_A Molybdate-binding perip 89.2 1.4 4.9E-05 42.4 9.4 76 487-566 17-98 (237)
193 3beh_A MLL3241 protein; transm 89.2 0.64 2.2E-05 48.2 7.3 72 591-666 143-216 (355)
194 3oxn_A Putative transcriptiona 89.1 6.7 0.00023 37.2 14.4 71 488-566 31-102 (241)
195 3s99_A Basic membrane lipoprot 88.7 4.5 0.00015 41.6 13.2 89 35-130 150-238 (356)
196 2hpg_A ABC transporter, peripl 88.1 3.4 0.00012 42.0 11.7 88 670-766 147-235 (327)
197 2fqx_A Membrane lipoprotein TM 87.9 9.5 0.00032 38.4 15.1 126 36-168 131-264 (318)
198 2de3_A Dibenzothiophene desulf 86.8 1 3.6E-05 46.7 7.1 25 719-743 210-234 (365)
199 3gzg_A Molybdate-binding perip 86.8 3.7 0.00013 40.0 10.7 75 488-566 34-114 (253)
200 3l6g_A Betaine ABC transporter 86.0 3.7 0.00013 40.0 10.3 45 489-537 15-59 (256)
201 2y7p_A LYSR-type regulatory pr 84.8 12 0.00042 34.8 13.2 71 488-566 20-91 (218)
202 2r9r_B Paddle chimera voltage 84.5 2.1 7E-05 46.6 8.2 56 610-665 372-429 (514)
203 2rin_A Putative glycine betain 84.5 3.4 0.00012 41.4 9.3 64 673-738 105-182 (298)
204 3tmg_A Glycine betaine, L-prol 84.5 6.6 0.00023 38.8 11.4 43 490-536 30-72 (280)
205 2esn_A Probable transcriptiona 84.1 14 0.00049 36.5 14.1 71 488-566 113-187 (310)
206 2xwv_A Sialic acid-binding per 84.1 6.5 0.00022 39.6 11.3 60 671-738 133-192 (312)
207 2hqb_A Transcriptional activat 83.6 13 0.00043 37.0 13.3 120 36-168 128-247 (296)
208 3k6v_A Solute-binding protein 83.4 13 0.00044 38.1 13.2 72 491-566 57-134 (354)
209 1r9l_A Glycine betaine-binding 82.8 7 0.00024 39.3 11.0 43 490-535 22-64 (309)
210 2xxp_A CPS2A; replication, pep 80.4 2.8 9.5E-05 43.8 7.0 70 671-746 26-101 (398)
211 2hxr_A HTH-type transcriptiona 79.7 39 0.0013 31.4 17.0 71 488-566 42-113 (238)
212 3muq_A Uncharacterized conserv 78.4 35 0.0012 32.5 13.6 75 488-566 18-95 (237)
213 3ukm_A Potassium channel subfa 78.1 2.6 8.9E-05 41.4 5.5 67 613-679 201-276 (280)
214 3fxq_A LYSR type regulator of 77.6 12 0.00042 37.0 10.9 73 488-566 104-177 (305)
215 2l82_A Designed protein OR32; 76.0 28 0.00095 27.7 10.3 99 144-258 4-105 (162)
216 3fzv_A Probable transcriptiona 75.1 17 0.00057 35.9 11.1 71 488-566 107-179 (306)
217 2xed_A Putative maleate isomer 73.8 10 0.00034 37.3 8.6 94 156-256 135-233 (273)
218 2czl_A Hypothetical protein TT 73.5 8.4 0.00029 37.6 8.1 59 676-739 91-150 (272)
219 2q5c_A NTRC family transcripti 73.2 56 0.0019 30.0 13.1 160 34-259 4-163 (196)
220 2eq5_A 228AA long hypothetical 73.2 17 0.00058 34.4 10.0 175 34-252 6-194 (228)
221 2dgd_A 223AA long hypothetical 72.4 12 0.00039 35.5 8.5 95 155-256 96-196 (223)
222 3m9w_A D-xylose-binding peripl 70.4 9.1 0.00031 38.2 7.7 80 168-257 3-84 (313)
223 3um7_A Potassium channel subfa 69.4 4.8 0.00017 40.1 5.1 53 613-665 115-169 (309)
224 3g1w_A Sugar ABC transporter; 69.4 7 0.00024 38.8 6.6 82 168-258 5-88 (305)
225 2zsk_A PH1733, 226AA long hypo 69.3 25 0.00085 33.2 10.1 79 89-202 66-144 (226)
226 3hn0_A Nitrate transport prote 69.2 23 0.00079 34.8 10.2 63 679-745 94-161 (283)
227 3bfj_A 1,3-propanediol oxidore 68.3 23 0.00079 36.7 10.4 89 157-253 23-115 (387)
228 4edp_A ABC transporter, substr 68.2 54 0.0018 32.8 13.3 57 712-770 216-275 (351)
229 1twy_A ABC transporter, peripl 67.5 53 0.0018 31.6 12.7 72 490-566 41-114 (290)
230 1jfl_A Aspartate racemase; alp 66.6 6.9 0.00024 37.3 5.5 38 87-126 65-102 (228)
231 1ixc_A CBNR, LYSR-type regulat 66.5 95 0.0032 29.9 16.2 70 488-565 103-173 (294)
232 3sya_A G protein-activated inw 66.2 16 0.00054 36.9 8.1 60 611-670 89-152 (340)
233 2vpn_A Periplasmic substrate b 65.8 10 0.00035 38.2 6.8 87 670-766 129-217 (316)
234 1uth_A LYSR-type regulatory pr 65.3 46 0.0016 32.9 11.8 70 489-566 118-188 (315)
235 3cfx_A UPF0100 protein MA_0280 64.1 33 0.0011 33.8 10.3 74 488-565 16-95 (296)
236 3cij_A UPF0100 protein AF_0094 63.4 43 0.0015 32.9 11.0 74 488-565 16-95 (295)
237 4ecf_A ABC-type phosphate tran 62.2 92 0.0031 30.0 12.9 73 489-566 16-92 (264)
238 3l49_A ABC sugar (ribose) tran 62.1 16 0.00056 35.7 7.6 82 167-258 5-88 (291)
239 8abp_A L-arabinose-binding pro 60.4 20 0.0007 35.3 8.0 80 168-258 3-84 (306)
240 3uug_A Multiple sugar-binding 59.1 17 0.00058 36.4 7.2 81 167-257 3-85 (330)
241 2h9b_A HTH-type transcriptiona 58.8 1.4E+02 0.0047 29.2 17.1 70 488-565 102-172 (312)
242 3ox4_A Alcohol dehydrogenase 2 58.7 14 0.00049 38.3 6.5 91 155-253 19-111 (383)
243 3spc_A Inward-rectifier K+ cha 57.8 21 0.00071 36.1 7.3 60 611-670 92-155 (343)
244 3k9c_A Transcriptional regulat 57.4 68 0.0023 31.2 11.2 118 36-163 128-252 (289)
245 2gzm_A Glutamate racemase; enz 56.7 53 0.0018 31.9 10.0 41 85-126 54-94 (267)
246 3um7_A Potassium channel subfa 55.9 17 0.00059 36.1 6.2 53 613-665 224-284 (309)
247 2ql3_A Probable transcriptiona 55.9 1.1E+02 0.0039 27.3 14.2 69 489-565 18-87 (209)
248 4dik_A Flavoprotein; TM0755, e 55.7 40 0.0014 35.2 9.4 94 168-272 266-365 (410)
249 3ukm_A Potassium channel subfa 54.7 13 0.00044 36.4 5.0 55 613-667 93-149 (280)
250 3rvy_A ION transport protein; 54.6 20 0.00067 35.4 6.5 57 611-667 178-242 (285)
251 3l6u_A ABC-type sugar transpor 54.6 22 0.00074 34.8 7.0 85 164-258 5-91 (293)
252 3d02_A Putative LACI-type tran 54.3 26 0.0009 34.4 7.6 81 168-257 5-87 (303)
253 3gbv_A Putative LACI-family tr 54.2 29 0.001 34.0 7.9 88 164-258 5-96 (304)
254 1al3_A Cys regulon transcripti 54.0 1.7E+02 0.0058 28.7 15.5 73 488-566 105-177 (324)
255 3lr1_A Tungstate ABC transport 53.6 12 0.00042 35.7 4.6 76 488-567 18-96 (236)
256 3rot_A ABC sugar transporter, 53.3 13 0.00045 36.7 5.0 83 168-258 4-88 (297)
257 2jfn_A Glutamate racemase; cel 51.8 73 0.0025 31.2 10.1 44 84-127 71-114 (285)
258 3h75_A Periplasmic sugar-bindi 51.6 20 0.00067 36.4 6.2 81 167-258 3-88 (350)
259 2h98_A HTH-type transcriptiona 51.3 1.8E+02 0.0063 28.3 18.0 70 488-565 102-172 (313)
260 3hcw_A Maltose operon transcri 50.8 1E+02 0.0036 29.9 11.4 117 35-163 132-259 (295)
261 1tjy_A Sugar transport protein 50.5 17 0.00057 36.4 5.3 81 168-257 4-86 (316)
262 2fn9_A Ribose ABC transporter, 49.8 26 0.0009 34.2 6.7 79 168-257 3-84 (290)
263 3jvd_A Transcriptional regulat 49.7 1.5E+02 0.005 29.5 12.5 118 35-164 175-299 (333)
264 3ksm_A ABC-type sugar transpor 49.5 19 0.00066 34.8 5.5 81 169-258 2-86 (276)
265 3tb6_A Arabinose metabolism tr 48.8 33 0.0011 33.5 7.3 80 168-258 16-101 (298)
266 2yxb_A Coenzyme B12-dependent 48.8 1.4E+02 0.0048 26.2 10.8 87 168-269 19-109 (161)
267 3o74_A Fructose transport syst 48.4 1.5E+02 0.005 28.1 11.9 118 35-163 121-246 (272)
268 1zuw_A Glutamate racemase 1; ( 48.0 71 0.0024 31.1 9.3 43 84-127 53-96 (272)
269 2h3h_A Sugar ABC transporter, 47.8 25 0.00085 34.9 6.2 80 169-257 3-83 (313)
270 3fxb_A Trap dicarboxylate tran 47.7 28 0.00094 35.1 6.4 86 671-766 144-231 (326)
271 2fyi_A HTH-type transcriptiona 47.7 1.6E+02 0.0056 26.7 16.4 72 488-566 26-98 (228)
272 4euo_A ABC transporter, substr 47.5 2.1E+02 0.0073 28.0 15.3 61 708-770 175-236 (320)
273 1mkz_A Molybdenum cofactor bio 47.3 83 0.0028 28.1 8.9 67 166-240 9-77 (172)
274 2vvt_A Glutamate racemase; iso 47.2 83 0.0028 30.9 9.7 42 84-126 74-115 (290)
275 2dwu_A Glutamate racemase; iso 46.8 84 0.0029 30.6 9.6 42 84-126 57-98 (276)
276 1rrm_A Lactaldehyde reductase; 46.5 26 0.00089 36.3 6.2 89 157-253 21-111 (386)
277 2nr1_A NR1 M2, M2; receptor, s 46.4 8.6 0.00029 22.2 1.3 19 611-629 6-24 (27)
278 4gd5_A Phosphate ABC transport 45.7 13 0.00045 36.5 3.6 36 32-75 36-71 (279)
279 2fvy_A D-galactose-binding per 45.6 80 0.0027 30.8 9.6 122 33-163 139-270 (309)
280 2jfq_A Glutamate racemase; cel 45.4 1.3E+02 0.0045 29.4 10.8 42 85-127 73-114 (286)
281 3dbi_A Sugar-binding transcrip 45.2 45 0.0015 33.4 7.7 89 158-257 52-144 (338)
282 3kos_A HTH-type transcriptiona 44.8 1.7E+02 0.0059 26.2 13.5 92 673-769 95-191 (219)
283 2fp4_A Succinyl-COA ligase [GD 44.7 2.1E+02 0.007 28.3 12.2 145 81-254 80-234 (305)
284 3ist_A Glutamate racemase; str 44.5 88 0.003 30.3 9.2 41 85-126 56-96 (269)
285 1jx6_A LUXP protein; protein-l 44.4 36 0.0012 34.2 6.8 83 168-257 44-129 (342)
286 3r6u_A Choline-binding protein 44.2 1.3E+02 0.0044 29.4 10.5 64 673-739 131-202 (284)
287 2l69_A Rossmann 2X3 fold prote 43.9 73 0.0025 24.5 6.5 53 144-202 53-105 (134)
288 1ccw_A Protein (glutamate muta 43.7 1.5E+02 0.0051 25.1 9.7 86 169-269 5-94 (137)
289 3uhj_A Probable glycerol dehyd 43.5 32 0.0011 35.6 6.2 82 157-250 43-126 (387)
290 2oho_A Glutamate racemase; iso 43.4 42 0.0014 32.7 6.8 39 87-126 65-103 (273)
291 3gyb_A Transcriptional regulat 42.6 54 0.0019 31.6 7.6 117 36-163 120-243 (280)
292 3jy6_A Transcriptional regulat 42.5 43 0.0015 32.3 6.9 80 166-258 6-87 (276)
293 3kke_A LACI family transcripti 41.8 34 0.0012 33.7 6.1 88 158-257 6-95 (303)
294 1vlj_A NADH-dependent butanol 41.4 66 0.0023 33.5 8.4 89 157-252 33-123 (407)
295 3rfq_A Pterin-4-alpha-carbinol 41.1 70 0.0024 29.0 7.3 67 166-240 29-97 (185)
296 2is8_A Molybdopterin biosynthe 41.1 65 0.0022 28.5 7.1 64 169-240 3-70 (164)
297 3cs3_A Sugar-binding transcrip 40.7 1.9E+02 0.0064 27.6 11.3 116 36-163 120-244 (277)
298 3hhf_B Transcriptional regulat 40.6 34 0.0012 31.0 5.5 67 488-565 19-86 (213)
299 1p99_A Hypothetical protein PG 40.5 29 0.00097 34.4 5.1 53 32-101 38-90 (295)
300 3qk7_A Transcriptional regulat 40.4 43 0.0015 32.8 6.5 80 166-258 5-90 (294)
301 3brq_A HTH-type transcriptiona 39.9 65 0.0022 31.2 7.8 86 160-257 12-102 (296)
302 1b73_A Glutamate racemase; iso 38.8 66 0.0023 30.9 7.4 127 84-247 50-186 (254)
303 2ioy_A Periplasmic sugar-bindi 38.7 45 0.0015 32.4 6.3 79 168-257 2-83 (283)
304 3cvg_A Putative metal binding 37.7 25 0.00087 34.7 4.3 75 488-566 32-116 (294)
305 3tpf_A Otcase, ornithine carba 37.6 3.1E+02 0.011 27.0 12.9 128 35-203 37-175 (307)
306 2pjk_A 178AA long hypothetical 37.4 1.1E+02 0.0038 27.4 8.1 68 165-240 13-89 (178)
307 3ce9_A Glycerol dehydrogenase; 37.4 57 0.0019 33.2 7.0 97 142-252 12-110 (354)
308 3h5o_A Transcriptional regulat 37.3 2.6E+02 0.0089 27.6 12.1 120 36-163 180-306 (339)
309 1o2d_A Alcohol dehydrogenase, 37.0 87 0.003 32.1 8.3 90 156-253 30-121 (371)
310 2xmo_A LMO2642 protein; phosph 36.8 63 0.0022 33.9 7.5 44 1-44 1-49 (443)
311 2dri_A D-ribose-binding protei 36.8 51 0.0017 31.7 6.3 79 168-257 2-83 (271)
312 3l4e_A Uncharacterized peptida 36.4 49 0.0017 30.7 5.7 85 155-257 15-102 (206)
313 2qh8_A Uncharacterized protein 35.7 1.2E+02 0.004 29.7 8.9 112 35-163 141-255 (302)
314 1i6a_A OXYR, hydrogen peroxide 35.4 92 0.0031 28.3 7.7 71 488-566 17-88 (219)
315 2b4l_A Glycine betaine-binding 35.3 79 0.0027 30.7 7.3 43 490-536 179-221 (268)
316 3k4h_A Putative transcriptiona 35.3 44 0.0015 32.5 5.6 83 164-258 5-94 (292)
317 2rjo_A Twin-arginine transloca 35.2 48 0.0016 33.1 6.0 79 168-257 6-89 (332)
318 1y80_A Predicted cobalamin bin 35.2 2.1E+02 0.0072 26.2 10.1 88 168-269 89-180 (210)
319 2x7x_A Sensor protein; transfe 35.1 70 0.0024 31.8 7.2 81 166-257 5-88 (325)
320 3d8u_A PURR transcriptional re 35.0 2E+02 0.0068 27.2 10.4 119 36-163 122-248 (275)
321 4exl_A PBP 1, phosphate-bindin 34.5 82 0.0028 30.4 7.3 72 490-566 17-92 (265)
322 2fep_A Catabolite control prot 34.4 62 0.0021 31.5 6.5 79 167-257 16-96 (289)
323 3g85_A Transcriptional regulat 34.1 1.5E+02 0.0052 28.4 9.5 121 36-163 129-257 (289)
324 3huu_A Transcription regulator 33.8 27 0.00091 34.5 3.7 89 158-258 13-108 (305)
325 2iks_A DNA-binding transcripti 33.7 31 0.0011 33.8 4.1 89 158-257 11-101 (293)
326 3hl0_A Maleylacetate reductase 33.6 48 0.0016 33.8 5.6 83 157-251 24-108 (353)
327 3onm_A Transcriptional regulat 33.5 74 0.0025 29.5 6.8 69 488-566 39-108 (238)
328 2g2c_A Putative molybdenum cof 33.5 81 0.0028 28.0 6.5 64 169-240 7-77 (167)
329 1jq5_A Glycerol dehydrogenase; 33.3 71 0.0024 32.7 6.9 96 142-251 10-107 (370)
330 4edp_A ABC transporter, substr 33.0 19 0.00066 36.3 2.5 65 1-76 4-70 (351)
331 2rgy_A Transcriptional regulat 32.9 63 0.0022 31.4 6.3 80 166-257 7-91 (290)
332 2qip_A Protein of unknown func 32.8 2.3E+02 0.0078 24.8 9.4 95 156-257 36-134 (165)
333 3iwt_A 178AA long hypothetical 32.7 83 0.0028 28.2 6.5 64 169-240 17-89 (178)
334 2i2x_B MTAC, methyltransferase 32.3 2.3E+02 0.008 27.0 10.1 86 168-270 124-214 (258)
335 3o66_A Glycine betaine/carniti 31.7 1.1E+02 0.0036 30.0 7.6 64 673-739 130-201 (282)
336 3jzd_A Iron-containing alcohol 31.7 41 0.0014 34.3 4.7 84 156-251 25-110 (358)
337 3c3k_A Alanine racemase; struc 31.6 1.5E+02 0.005 28.5 8.8 116 36-163 126-251 (285)
338 1jye_A Lactose operon represso 31.6 70 0.0024 32.2 6.5 69 162-240 56-126 (349)
339 3lft_A Uncharacterized protein 31.5 2.7E+02 0.0091 26.8 10.8 112 35-163 134-248 (295)
340 1y5e_A Molybdenum cofactor bio 31.4 1.6E+02 0.0055 26.0 8.1 68 165-240 11-80 (169)
341 4gd5_A Phosphate ABC transport 31.3 52 0.0018 32.0 5.3 71 493-567 49-124 (279)
342 4dz1_A DALS D-alanine transpor 31.1 75 0.0026 30.1 6.4 55 165-237 135-190 (259)
343 3p6l_A Sugar phosphate isomera 30.9 2.3E+02 0.0077 26.8 9.9 94 155-257 24-129 (262)
344 1xs5_A 29 kDa protein, membran 30.8 1.4E+02 0.0048 28.3 8.1 37 495-534 21-57 (241)
345 2pju_A Propionate catabolism o 30.7 2.2E+02 0.0075 26.6 9.2 163 35-259 13-175 (225)
346 3bbl_A Regulatory protein of L 30.5 2E+02 0.0069 27.5 9.6 119 36-163 127-255 (287)
347 1byk_A Protein (trehalose oper 30.0 1.4E+02 0.0047 28.1 8.1 114 36-162 117-235 (255)
348 3hs3_A Ribose operon repressor 29.9 65 0.0022 31.0 5.8 70 160-240 3-75 (277)
349 3e61_A Putative transcriptiona 29.8 51 0.0017 31.7 5.0 79 166-258 7-88 (277)
350 1dbq_A Purine repressor; trans 29.6 1.8E+02 0.0062 27.8 9.1 118 36-163 128-254 (289)
351 3ksx_A Nitrate transport prote 29.3 72 0.0025 31.7 6.1 85 683-769 30-122 (324)
352 3r7f_A Aspartate carbamoyltran 29.2 1.4E+02 0.0047 29.5 7.8 132 35-203 37-178 (304)
353 3gv0_A Transcriptional regulat 29.2 62 0.0021 31.4 5.5 84 163-258 4-91 (288)
354 3brs_A Periplasmic binding pro 29.1 3.7E+02 0.013 25.4 13.0 118 35-162 132-257 (289)
355 1p99_A Hypothetical protein PG 29.1 1.2E+02 0.004 29.9 7.4 36 495-533 56-91 (295)
356 3kjx_A Transcriptional regulat 29.0 1.7E+02 0.0058 29.1 9.0 119 36-163 187-314 (344)
357 3uor_A ABC transporter sugar b 28.4 48 0.0016 35.1 4.8 49 51-103 40-89 (458)
358 3tsm_A IGPS, indole-3-glycerol 28.3 3.3E+02 0.011 26.3 10.2 88 155-258 81-171 (272)
359 3fni_A Putative diflavin flavo 28.2 1.8E+02 0.0062 25.3 7.9 90 168-270 5-98 (159)
360 2o20_A Catabolite control prot 28.0 1.8E+02 0.0062 28.7 9.0 118 36-163 182-306 (332)
361 4f2g_A Otcase 1, ornithine car 27.9 1.4E+02 0.0049 29.5 7.7 128 35-203 46-183 (309)
362 1xrs_B D-lysine 5,6-aminomutas 27.6 3.9E+02 0.013 25.6 10.5 100 156-269 107-224 (262)
363 3umf_A Adenylate kinase; rossm 27.6 21 0.00073 33.5 1.5 35 94-128 27-61 (217)
364 3kbq_A Protein TA0487; structu 27.3 1.1E+02 0.0038 27.3 6.2 62 168-237 4-68 (172)
365 3e3m_A Transcriptional regulat 27.3 2.1E+02 0.0071 28.6 9.3 120 36-163 189-317 (355)
366 2hxw_A Major antigenic peptide 27.3 95 0.0033 28.9 6.3 73 488-565 12-91 (237)
367 3egc_A Putative ribose operon 27.2 44 0.0015 32.5 4.0 82 164-257 5-88 (291)
368 2vk2_A YTFQ, ABC transporter p 26.7 83 0.0028 30.8 6.0 79 168-257 3-84 (306)
369 1gud_A ALBP, D-allose-binding 26.6 70 0.0024 31.0 5.4 81 168-257 2-85 (288)
370 3clk_A Transcription regulator 26.2 55 0.0019 31.8 4.5 80 166-257 7-89 (290)
371 3o1i_D Periplasmic protein TOR 25.7 64 0.0022 31.4 4.9 81 168-257 6-88 (304)
372 2ef0_A Ornithine carbamoyltran 25.3 4.5E+02 0.015 25.8 10.7 130 35-203 46-183 (301)
373 3hzh_A Chemotaxis response reg 25.3 2.5E+02 0.0084 23.8 8.3 62 184-259 47-112 (157)
374 4ep1_A Otcase, ornithine carba 25.1 5.2E+02 0.018 25.8 12.1 128 35-203 71-208 (340)
375 3dnf_A ISPH, LYTB, 4-hydroxy-3 24.8 1.1E+02 0.0039 29.9 6.1 82 35-125 157-239 (297)
376 3bil_A Probable LACI-family tr 24.8 88 0.003 31.4 5.8 80 166-257 65-146 (348)
377 2hsg_A Glucose-resistance amyl 24.7 86 0.003 31.1 5.7 80 166-257 59-140 (332)
378 2qmw_A PDT, prephenate dehydra 24.6 4E+02 0.014 25.6 10.0 79 683-767 3-95 (267)
379 2bon_A Lipid kinase; DAG kinas 24.2 2.8E+02 0.0094 27.6 9.4 94 144-255 12-105 (332)
380 2qmx_A Prephenate dehydratase; 24.1 3.7E+02 0.013 26.1 9.7 76 683-767 6-93 (283)
381 1twy_A ABC transporter, peripl 23.6 1E+02 0.0035 29.5 5.9 57 32-104 27-83 (290)
382 4es6_A Uroporphyrinogen-III sy 23.5 1.3E+02 0.0044 28.6 6.5 92 149-254 110-206 (254)
383 3c5y_A Ribose/galactose isomer 23.4 1.7E+02 0.0057 27.4 6.6 76 165-244 17-96 (231)
384 3sr0_A Adenylate kinase; phosp 23.4 32 0.0011 31.9 1.9 31 98-128 2-32 (206)
385 3out_A Glutamate racemase; str 23.3 2.4E+02 0.0081 27.2 8.2 40 86-126 59-99 (268)
386 3ezx_A MMCP 1, monomethylamine 23.3 4.4E+02 0.015 24.2 10.2 90 168-270 93-187 (215)
387 3cz5_A Two-component response 23.3 2.3E+02 0.0077 23.8 7.6 60 184-257 16-78 (153)
388 1ixh_A Phosphate-binding prote 23.2 57 0.0019 32.6 3.9 72 490-565 15-87 (321)
389 2vvr_A Ribose-5-phosphate isom 23.1 3.4E+02 0.012 23.4 8.1 64 173-244 6-71 (149)
390 3kn3_A Putative periplasmic pr 22.8 75 0.0026 30.3 4.4 75 488-566 18-95 (242)
391 4h1x_A PBP 2, phosphate-bindin 22.7 56 0.0019 31.7 3.6 48 517-566 193-241 (265)
392 2jtq_A Phage shock protein E; 22.7 2.2E+02 0.0075 21.3 6.5 41 218-259 27-68 (85)
393 3lmz_A Putative sugar isomeras 22.5 2.7E+02 0.0091 26.2 8.6 96 155-257 32-127 (257)
394 3tod_A Lactotransferrin; C-LOB 22.3 1.8E+02 0.006 29.2 7.1 34 715-751 35-68 (335)
395 1jlj_A Gephyrin; globular alph 22.3 2.2E+02 0.0076 25.7 7.4 70 163-240 10-86 (189)
396 2l69_A Rossmann 2X3 fold prote 22.1 2.7E+02 0.0093 21.4 8.4 99 142-256 26-125 (134)
397 2csu_A 457AA long hypothetical 22.1 95 0.0033 32.8 5.5 148 81-260 73-231 (457)
398 3eod_A Protein HNR; response r 22.0 2.7E+02 0.0092 22.3 7.6 60 185-259 19-80 (130)
399 3ix1_A N-formyl-4-amino-5-amin 21.8 1.2E+02 0.0042 29.5 6.1 59 709-769 38-97 (302)
400 1pc3_A Phosphate-binding prote 21.8 62 0.0021 32.9 3.9 71 490-565 40-114 (350)
401 3pzy_A MOG; ssgcid, seattle st 21.8 1.5E+02 0.0051 26.1 5.9 65 167-240 7-74 (164)
402 2h0a_A TTHA0807, transcription 21.7 3.8E+02 0.013 25.1 9.7 117 36-163 116-245 (276)
403 3u65_B TP33 protein; tetratric 21.3 64 0.0022 32.4 3.8 88 670-766 144-234 (328)
404 1uuy_A CNX1, molybdopterin bio 21.2 2.7E+02 0.0093 24.4 7.6 78 167-252 5-96 (167)
405 3qvl_A Putative hydantoin race 21.2 5.2E+02 0.018 24.3 14.0 85 35-127 2-97 (245)
406 1o1x_A Ribose-5-phosphate isom 21.2 2.9E+02 0.0098 24.0 7.3 68 170-244 13-82 (155)
407 2pbq_A Molybdenum cofactor bio 21.1 2E+02 0.0069 25.6 6.8 64 168-240 6-76 (178)
408 1m3s_A Hypothetical protein YC 21.1 4.2E+02 0.015 23.2 9.9 44 85-128 26-70 (186)
409 2qu7_A Putative transcriptiona 21.0 1.8E+02 0.0061 27.9 7.1 119 36-163 124-254 (288)
410 1jeo_A MJ1247, hypothetical pr 20.9 4.2E+02 0.014 23.1 9.9 43 85-127 29-72 (180)
411 3miz_A Putative transcriptiona 20.9 1.6E+02 0.0055 28.5 6.8 86 159-257 5-93 (301)
412 2z1a_A 5'-nucleotidase; metal- 20.8 7.9E+02 0.027 26.3 13.9 122 1-128 1-140 (552)
413 3mc2_A Inhibitor of carbonic a 20.8 1.4E+02 0.0047 33.3 6.5 66 682-753 340-409 (687)
414 3zy2_A Putative GDP-fucose pro 20.7 2.5E+02 0.0085 28.2 7.6 93 146-259 259-351 (362)
415 1h45_A Lactoferrin; metal tran 20.6 2.1E+02 0.007 28.7 7.3 56 711-769 39-104 (334)
416 3loq_A Universal stress protei 20.6 5.6E+02 0.019 24.4 12.9 152 68-242 99-261 (294)
417 1qpz_A PURA, protein (purine n 20.2 3.2E+02 0.011 26.9 9.0 119 36-163 179-305 (340)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=1.8e-84 Score=775.98 Aligned_cols=670 Identities=19% Similarity=0.308 Sum_probs=558.3
Q ss_pred cEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCC-CHHHHHHHHHHHHhcCCeEEEEcCCchHhHHH
Q 004136 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (771)
Q Consensus 34 ~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~-~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~ 112 (771)
+||||+++|+++. ....|+++|+++||+++ ++|++++.|+++ ++..+.+.+|+++ +++|.+||||.+|..+.+
T Consensus 2 ~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~--~~l~~~~~D~~~~~~~~a~~~~~~l~-~~~V~aiiG~~~S~~~~a 75 (823)
T 3kg2_A 2 SIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE--FRLTPHIDNLEVANSFAVTNAFCSQF-SRGVYAIFGFYDKKSVNT 75 (823)
T ss_dssp EEEEEEEEETTCH---HHHHHHHHHHHHTCCSS--CEEEEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCCTTTHHH
T ss_pred cceEEEEeCCCCh---HHHHHHHHHHHHHhcCC--eEEEEEEEEcCCCChHHHHHHHHHHH-hcCcEEEEcCCChhHHHH
Confidence 6999999999954 88999999999999996 999999999998 9999999999999 679999999999999999
Q ss_pred HHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHH
Q 004136 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (771)
Q Consensus 113 v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (771)
++++++.+++|+|++.. +.. ..+||+||+.|+ ++.+++++++++||++|++|+ |++|| ....+.++++
T Consensus 76 ~~~i~~~~~iP~is~~~----~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g--~~~~~~~~~~ 143 (823)
T 3kg2_A 76 ITSFCGTLHVSFITPSF----PTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRG--LSTLQAVLDS 143 (823)
T ss_dssp HHHHHHHTTCEEEECSC----CCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGC--THHHHHHHHH
T ss_pred HHHHhhcCCCceeeccc----CCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChh--HHHHHHHHHH
Confidence 99999999999999743 332 467899999999 899999999999999999999 77889 9999999999
Q ss_pred HhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeCcccc
Q 004136 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVAN 272 (771)
Q Consensus 193 ~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 272 (771)
+++.| ++|+..+.++......+ +++..++.+++++++|+|++ .++..++..++++|+++||.++.|+||.++....
T Consensus 144 ~~~~g-~~v~~~~~~~~~~~~~~--~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 219 (823)
T 3kg2_A 144 AAEKK-WQVTAINVGNINNDKKD--ETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITIGKHVKGYHYIIANLGFT 219 (823)
T ss_dssp HHHTT-CEEEEEECSSCCSSSTT--TTTTTHHHHTTTTTCCEEEE-ECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSS
T ss_pred hhccC-CceEEEEeecCCCCccc--hhHHHHHHHHHhcCCeEEEE-ECCHHHHHHHHHHHHHcCcCCCCeEEEEeccccc
Confidence 99999 99999887765521111 56899999999999999999 9999999999999999999999999999985433
Q ss_pred cccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHhhccC---
Q 004136 273 ALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYN--- 349 (771)
Q Consensus 273 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~~~~--- 349 (771)
.... ........+++++.++.+.. |.+++|.++|+++|..+++......++.+++++||||+++++|+++++.+
T Consensus 220 ~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~ 296 (823)
T 3kg2_A 220 DGDL--LKIQFGGAEVSGFQIVDYDD-SLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIE 296 (823)
T ss_dssp SSCC--SSSSSSBCEEEEEESSCTTS-HHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccch--HHhhcCCCCceEeeeecCCc-hHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 2221 11223445688888777766 89999999999988777665444567888999999999999999997631
Q ss_pred -----------------CCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEeeCCceEEEEEecCCCCCccccC
Q 004136 350 -----------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSS 412 (771)
Q Consensus 350 -----------------~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~~~~~~~~~ 412 (771)
+.+++.|.++|++++|+|++|+++||++|++.+..|+|++++++++++||.|++..++.....
T Consensus 297 ~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~~ 376 (823)
T 3kg2_A 297 ISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTED 376 (823)
T ss_dssp CCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEEEECCC
T ss_pred cccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCceeccC
Confidence 357889999999999999999999999999998999999999999999999999876553210
Q ss_pred CCccccccCccccCCCCcceecCCCCCCCCCCccccCCCCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchH
Q 004136 413 KHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSI 492 (771)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~i~Wp~~~~~~~p~~~~~~~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~ 492 (771)
. . ....+++++|++...||| .+.+++.+ ..+++.++.|||+
T Consensus 377 -----------------------~--~--------~~~~~~~l~v~~~~~~P~---~~~~~~~~---~~~~~~~~~G~~~ 417 (823)
T 3kg2_A 377 -----------------------D--T--------SGLEQKTVVVTTILESPY---VMMKANHA---ALAGNERYEGYCV 417 (823)
T ss_dssp -----------------------C--C--------SSCCCCCEEEEECCCTTT---SEECTTGG---GCCGGGGEESHHH
T ss_pred -----------------------c--c--------cccCCCEEEEEEecCCCc---EEEecCcc---ccCCCCceEEEHH
Confidence 0 0 123578999999877665 45533211 0112448999999
Q ss_pred HHHHHHHHHCCCcccEEEecC---------CCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEec
Q 004136 493 ELFRLVVDHLNYDLPYEFVPH---------DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPA 563 (771)
Q Consensus 493 ~l~~~~a~~l~f~~~~~~~~~---------~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~ 563 (771)
||++++++++||+++++.+++ +|+|++++++|.+|++|++++++++|.+|.+.+|||.||+.+++++++|+
T Consensus 418 dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~ 497 (823)
T 3kg2_A 418 DLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKK 497 (823)
T ss_dssp HHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEEC
T ss_pred HHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEEC
Confidence 999999999999988887662 46799999999999999999999999999999999999999999999999
Q ss_pred CCCC--CccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcC--------------cccchHHHHHHHHHHHhhc
Q 004136 564 KQEE--STWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRG--------------TLKDQISNILWFAFSTIFF 627 (771)
Q Consensus 564 ~~~~--~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 627 (771)
+... +++.|++||++.+|++++++++++++++|+++|.++.++.. ....++.+++|++++++++
T Consensus 498 ~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 577 (823)
T 3kg2_A 498 PQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQ 577 (823)
T ss_dssp CCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC
T ss_pred CCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHh
Confidence 8653 68899999999999999999999999999999976543321 1123578999999999999
Q ss_pred cC-cccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhh-CCceEEEecChHHHHHHHHhcCCC
Q 004136 628 SH-RANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKS-GNLKVGCVDDSFVKKYLEEVLGFR 705 (771)
Q Consensus 628 ~~-~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~-~~~~~g~~~~s~~~~~l~~~~~~~ 705 (771)
|+ ...|++.++|+++++||||+||++++|||+|+|+||.+++.++|+|++||.+ .++++|+..++....++++. ...
T Consensus 578 ~g~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~-~~~ 656 (823)
T 3kg2_A 578 QGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRS-KIA 656 (823)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHC-CCH
T ss_pred cCCCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhc-cch
Confidence 98 4567999999999999999999999999999999999999999999999986 46889998877778888762 111
Q ss_pred C-----------CCcccCCCCHHHHHHHHH-cCCceEEEecchhHHHHHHhc-CCceeEee-eeeeceEEEEEecCCCC
Q 004136 706 S-----------GNIVPFGNTEANYIQKFE-NNTIDSLFLERPYEKVFLDKY-CKKYTAIN-TYRFGGLGFVSNIIYSH 770 (771)
Q Consensus 706 ~-----------~~~~~~~~~~~~~~~~v~-~~~~~a~i~~~~~~~~~~~~~-c~~l~~~~-~~~~~~~g~~~~k~s~~ 770 (771)
. .....+.+ .+|++++++ +++.+|++.|.+.++|..+++ |+ +++++ .+...+||+++|||||+
T Consensus 657 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c~-l~~v~~~~~~~~~~~~~~k~spl 733 (823)
T 3kg2_A 657 VFDKMWTYMRSAEPSVFVRT-TAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPKGSSL 733 (823)
T ss_dssp HHHHHHHHHHHCSSCCCBSS-HHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTCC-EEEESCCSSCEEECCEEETTCSS
T ss_pred HHHHHHHHHHhcCCccccCC-HHHHHHHHhccCCceEEEechHHHHHHHhcCCCc-eEEccccccccceeEeecCCChH
Confidence 0 01112346 999999997 566799999999999888776 98 89999 99999999999999986
No 2
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=2e-47 Score=421.15 Aligned_cols=371 Identities=19% Similarity=0.273 Sum_probs=319.8
Q ss_pred CCCcEEEEEEEeCCC-----cCchHHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEE
Q 004136 31 IEEVTKIGAIVDANS-----QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIA 102 (771)
Q Consensus 31 ~~~~I~IG~i~p~s~-----~~g~~~~~a~~~Av~~iN~~~--~g~~i~l~~~D~~~~~~~a~~~~~~li~~-~~v~avi 102 (771)
+.++|+||+++|+++ ..|.....|+++|+++||+++ +|++|+++++|+++++..++..+++|+.+ ++|.+||
T Consensus 11 ~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~avi 90 (433)
T 4f11_A 11 SSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVF 90 (433)
T ss_dssp CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHTTTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSEEE
T ss_pred CCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 357899999999995 457889999999999999985 68999999999999999999999999975 4999999
Q ss_pred cCCchHhHHHHHHhhccCCccEEeecCCCCCCCccC-CCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCC
Q 004136 103 GMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG 181 (771)
Q Consensus 103 Gp~~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~-~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~ 181 (771)
||.+|..+.+++++++.+++|+|+++++ ++.+++ ..+||+||+.|++..++.++++++++++|++|++|+++++||
T Consensus 91 G~~~S~~~~a~~~~~~~~~ip~is~~~~--~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g- 167 (433)
T 4f11_A 91 GGVCPSVTSIIAESLQGWNLVQLSFAAT--TPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRF- 167 (433)
T ss_dssp ECCSHHHHHHHHHTHHHHTCEEEESSCC--CGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH-
T ss_pred CCCcchHHHHHHHHHHhcCceEEEcccC--CccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhh-
Confidence 9999999999999999999999999999 899988 579999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCC
Q 004136 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (771)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~ 261 (771)
....+.|++.+++.| ++|+..+.++. |+..++.++++.++|+|++ ++...++..++++++++|+.+++
T Consensus 168 -~~~~~~~~~~~~~~g-~~v~~~~~~~~---------d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~ 235 (433)
T 4f11_A 168 -SEVRNDLTGVLYGED-IEISDTESFSN---------DPCTSVKKLKGNDVRIILG-QFDQNMAAKVFCCAYEENMYGSK 235 (433)
T ss_dssp -HHHHHHHHHHSSSSS-CEEEEEEEESS---------CCHHHHHHHHHTTCCEEEE-ECCHHHHHHHHHHHHHTTCCSTT
T ss_pred -HHHHHHHHHHHHHcC-ceEEEEeccCc---------CHHHHHHHHhhCCCeEEEE-eCcHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999 99999888763 3678899999999999999 99999999999999999999988
Q ss_pred eEEEeeCccccccc-----------ccChhhhhccccEEEEEeeccCC-------ChhHHHHHHHHHHh-cccCCCCCCC
Q 004136 262 SVWIVTNTVANALD-----------SLNTTVISSMEGTLGIKSYYSDD-------SSPYKEFSALFRRN-FTSEYPEEDH 322 (771)
Q Consensus 262 ~~~i~~~~~~~~~~-----------~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~f~~~~~~~-~~~~~~~~~~ 322 (771)
|+||+++.....+. .......+.++|++++.++.+.. ++..++|.++|+++ + +
T Consensus 236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~--------~ 307 (433)
T 4f11_A 236 YQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRS--------G 307 (433)
T ss_dssp CEEEEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHT--------T
T ss_pred eEEEEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcC--------C
Confidence 99999998433221 11223447789999988765432 13478899988876 3 4
Q ss_pred CCCchhhhhHhHHHHHHHHHHHhhccC-----------------CCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeE
Q 004136 323 FHPSIHALRAHDSIKIITEAIGRLNYN-----------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTL 385 (771)
Q Consensus 323 ~~~~~~a~~~YDav~~~a~Al~~~~~~-----------------~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~ 385 (771)
..++.+++++||||+++++|++++..+ +.+++.|.++|++++|+|++|+|+| ++|++. ..|
T Consensus 308 ~~~~~~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~~ 385 (433)
T 4f11_A 308 VGPSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GTI 385 (433)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CEE
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-eeE
Confidence 467888999999999999999998541 1137899999999999999999999 899987 899
Q ss_pred EEEEeeCCceEEEEEecCCCCCccccCCCccccccCccccCCCCcceecCCCCCCCCCCcc
Q 004136 386 RIVNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGW 446 (771)
Q Consensus 386 ~I~~~~~~~~~~vg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Wp~~~~~~~p~~~ 446 (771)
.|++++++++++||.|++..+ ...+. . ++|+||++ .+|++.
T Consensus 386 ~I~~~~~g~~~~VG~~~~~~~-~l~~~-------------~---~~i~W~~~---~~P~D~ 426 (433)
T 4f11_A 386 KFTQFQDSREVKVGEYNAVAD-TLEII-------------N---DTIRFQGS---EPPKDD 426 (433)
T ss_dssp EEEEEETTEEEEEEEEETTTT-EEEEC-------------T---TTCCCSSS---SCCCSS
T ss_pred EEEEEECCceEEEEEEECCCC-eEEEe-------------C---CceECCCC---CCCCCc
Confidence 999999999999999987532 11111 1 46999998 677653
No 3
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=1.6e-46 Score=406.67 Aligned_cols=353 Identities=16% Similarity=0.245 Sum_probs=304.2
Q ss_pred CCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCC----CCcEEEEEEecCCC-CHHHHHHHHHHHHhcCCeEEEEcCCc
Q 004136 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS----RNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMET 106 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~----~g~~i~l~~~D~~~-~~~~a~~~~~~li~~~~v~aviGp~~ 106 (771)
+++||||+++|+++. ..+.|+++|+++||+++ +|++|+++++|++| ++..+++.+++|+ +++|.+||||.+
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li-~~~V~aiiG~~~ 78 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQF-SRGVYAIFGFYD 78 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHH-TTTCSCEEECCC
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHH-hcCcEEEEeCCC
Confidence 578999999999954 89999999999999986 48999999999987 9999999999999 569999999999
Q ss_pred hHhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchH
Q 004136 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (771)
Q Consensus 107 s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (771)
|..+.+++++++.++||+|+++.. .+ ...+|.||+.|+ ++.++++++++++|++|++|| |++|| ....
T Consensus 79 S~~~~a~~~i~~~~~iP~Is~s~~----~~--~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g--~~~~ 146 (389)
T 3o21_A 79 QMSMNTLTSFCGALHTSFVTPSFP----TD--ADVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERG--FSVL 146 (389)
T ss_dssp TTTHHHHHHHHHHHTCCEEECSCC----CS--SCCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTC--SHHH
T ss_pred hhHHHHHHHHhccCCCceeecCCC----Cc--cCCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHH--HHHH
Confidence 999999999999999999987533 33 244677788877 899999999999999999999 77999 9999
Q ss_pred HHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEe
Q 004136 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (771)
Q Consensus 187 ~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (771)
+.+.+.+++.| ++|+..+.++... ..|+..+|.+++++++|+|++ .++..++..++++++++|+.++.|+||.
T Consensus 147 ~~~~~~~~~~g-~~v~~~~~~~~~~-----~~d~~~~l~~ik~~~~~vii~-~~~~~~~~~i~~qa~~~g~~~~~~~~i~ 219 (389)
T 3o21_A 147 QAIMEAAVQNN-WQVTARSVGNIKD-----VQEFRRIIEEMDRRQEKRYLI-DCEVERINTILEQVVILGKHSRGYHYML 219 (389)
T ss_dssp HHHHHHHHHTT-CEEEEEECTTCCC-----THHHHHHHHHHHTTTCCEEEE-ESCHHHHHHHHHHHHHHCSCSTTCEEEE
T ss_pred HHHHHHhhcCC-CeEEEEEecCCCC-----cHHHHHHHHHHHhCCCeEEEE-ECCHHHHHHHHHHHHHcCcccCCeEEEE
Confidence 99999999999 9999887665322 158999999999999999999 9999999999999999999999999999
Q ss_pred eCcccccccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHhh
Q 004136 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (771)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~ 346 (771)
++.+....+. ........+++++....++. |.+++|.++|+++|..+++......++.+++++|||++++++|++++
T Consensus 220 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~ 296 (389)
T 3o21_A 220 ANLGFTDILL--ERVMHGGANITGFQIVNNEN-PMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYL 296 (389)
T ss_dssp CCTTGGGCCC--HHHHHTTCEEEEEESCCTTC-HHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccccH--HHHhcCCcceEEEEEecCCC-hhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 8866544322 12234456788888776665 89999999999988765543222356788999999999999999987
Q ss_pred cc-------------C-------CCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEeeCCceEEEEEecCCCC
Q 004136 347 NY-------------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFG 406 (771)
Q Consensus 347 ~~-------------~-------~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~~~ 406 (771)
.. + |.+|..|+++|++++|+|++|+++||++|++.+..|+|++++++++++||.|++..|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 376 (389)
T 3o21_A 297 RRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYER 376 (389)
T ss_dssp HHTTCCCC-----CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTE
T ss_pred HhhCcccccCCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCCC
Confidence 62 1 356889999999999999999999999999988899999999999999999999988
Q ss_pred Cccc
Q 004136 407 FSKT 410 (771)
Q Consensus 407 ~~~~ 410 (771)
+...
T Consensus 377 ~~~~ 380 (389)
T 3o21_A 377 FVPF 380 (389)
T ss_dssp EECC
T ss_pred cccc
Confidence 7643
No 4
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=1.7e-45 Score=397.26 Aligned_cols=351 Identities=18% Similarity=0.258 Sum_probs=283.1
Q ss_pred cEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCC-CCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHH
Q 004136 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (771)
Q Consensus 34 ~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~-~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~ 112 (771)
+||||+++|+++ ...+.|+++|+++||++ |++|++++.|++ +||..+.+.+|+|+ +++|.+||||.+|..+.+
T Consensus 2 ~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~--g~~l~~~~~d~~~~d~~~a~~~~~~li-~~~V~aiiG~~~S~~~~a 75 (376)
T 3hsy_A 2 SIQIGGLFPRGA---DQEYSAFRVGMVQFSTS--EFRLTPHIDNLEVANSFAVTNAFCSQF-SRGVYAIFGFYDKKSVNT 75 (376)
T ss_dssp EEEEEEEEETTC---HHHHHHHHHHHHHTCCS--SCEEEEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCCTTTHHH
T ss_pred ceeEEEEeCCCC---HHHHHHHHHHHHHHhcC--CeEEEEEEeecCCCChHHHHHHHHHHH-hcCcEEEECCCchhHHHH
Confidence 699999999984 57899999999999998 799999999965 59999999999999 569999999999999999
Q ss_pred HHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHH
Q 004136 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (771)
Q Consensus 113 v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (771)
++++++.+++|+|+++++ + ....+|+||+.|+ ++.++++++++++|++|++|+ |++|| ....+.|++.
T Consensus 76 v~~~~~~~~ip~is~~~~--~----~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g--~~~~~~~~~~ 143 (376)
T 3hsy_A 76 ITSFCGTLHVSFITPSFP--T----DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRG--LSTLQAVLDS 143 (376)
T ss_dssp HHHHHHHHTCEEEECSCC--C----CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTC--SHHHHHHHHH
T ss_pred HHHHhccCcCceeecCCC--C----cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchh--HHHHHHHHHH
Confidence 999999999999998765 3 2356889999887 899999999999999999999 78999 9999999999
Q ss_pred HhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeCcccc
Q 004136 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVAN 272 (771)
Q Consensus 193 ~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 272 (771)
+++.| ++|.....++......+ +|+..+|.++++.++|+|++ .++..++..++++++++||.++.|+||.++....
T Consensus 144 ~~~~g-~~v~~~~~~~~~~~~~~--~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~ 219 (376)
T 3hsy_A 144 AAEKK-WQVTAINVGNINNDKKD--ETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITIGKHVKGYHYIIANLGFT 219 (376)
T ss_dssp HHHHT-CEEEEEECTTCC----------------------CEEEE-ESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTT
T ss_pred hhhcC-CeEEEEEeccccccccc--hhHHHHHHHHhhCCCeEEEE-ECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCcc
Confidence 99999 99988765543210011 57999999999999999999 9999999999999999999988899999874322
Q ss_pred cccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHhhccC---
Q 004136 273 ALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYN--- 349 (771)
Q Consensus 273 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~~~~--- 349 (771)
.... ........++.++.+..++. |.+++|.++|+++|..+++......|+.+++++|||++++++|+++++++
T Consensus 220 ~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~ 296 (376)
T 3hsy_A 220 DGDL--LKIQFGGANVSGFQIVDYDD-SLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIE 296 (376)
T ss_dssp STTG--GGSCCTTCEEEEEESCCTTS-HHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccch--HHhhcCCcCceEEEEecCCc-hHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 2211 11112223477777666655 89999999999988766654323358889999999999999999997631
Q ss_pred -----------------CCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEeeCCceEEEEEecCCCCCcc
Q 004136 350 -----------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSK 409 (771)
Q Consensus 350 -----------------~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~~~~~~ 409 (771)
|.++..|+++|++++|+|++|+++||++|++.+..++|++++++++++||.|++..|+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 297 ISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVV 373 (376)
T ss_dssp CSCCCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred cccCCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCcee
Confidence 245689999999999999999999999999988999999999999999999999888653
No 5
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=1.8e-44 Score=398.43 Aligned_cols=357 Identities=14% Similarity=0.175 Sum_probs=295.6
Q ss_pred CCcEEEEEEEeCCC---cCchHHHHHHHHHHHHHhcCC-------CCcEEEEEEecCCCCHHHHHHHHHHHHh---cCCe
Q 004136 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS-------RNHKLSLQIRDHNRDPFQAATAAQELIN---KEKV 98 (771)
Q Consensus 32 ~~~I~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~-------~g~~i~l~~~D~~~~~~~a~~~~~~li~---~~~v 98 (771)
+++|+||+++|+++ ..|.....|+++|+++||+++ +|++|++++.|+++++. ++..+.+++- +++|
T Consensus 7 ~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~v 85 (441)
T 1jdp_A 7 PQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAKP 85 (441)
T ss_dssp CCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCCC
T ss_pred CCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCCc
Confidence 57899999999984 345678899999999999975 38999999999999998 7665555432 3489
Q ss_pred EEEEcCCchHhHHHHHHhhccCCccEEeecCCCCCCCccCC--CCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEe
Q 004136 99 KVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSR--RWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED 176 (771)
Q Consensus 99 ~aviGp~~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~--~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~ 176 (771)
.+||||.+|..+.+++++++.+++|+|+++++ ++.++++ .|||+||+.|++..++.++++++++|+|++|++|++|
T Consensus 86 ~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~--~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d 163 (441)
T 1jdp_A 86 DLILGPVCEYAAAPVARLASHWDLPMLSAGAL--AAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSD 163 (441)
T ss_dssp SEEECCCSHHHHHHHHHHHHHHTCCEEESCCC--SGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred eEEECCCchhhHHHHHHHHhhcCCcEEcCCCC--chhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEc
Confidence 99999999999999999999999999999999 8999884 7999999999999999999999999999999999999
Q ss_pred CCCCCCcc---hHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHH
Q 004136 177 NVYGGDSG---KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEAN 253 (771)
Q Consensus 177 ~~~g~~~~---~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~ 253 (771)
++|| +. ..+.+++.+++.| +||+....++... .++..++++++ +++|+|++ +++..++..++++++
T Consensus 164 ~~~g--~~~~~~~~~~~~~~~~~g-~~v~~~~~~~~~~------~d~~~~l~~i~-~~~~vii~-~~~~~~~~~~~~~~~ 232 (441)
T 1jdp_A 164 DKLE--RNCYFTLEGVHEVFQEEG-LHTSIYSFDETKD------LDLEDIVRNIQ-ASERVVIM-CASSDTIRSIMLVAH 232 (441)
T ss_dssp CSSS--CHHHHHHHHHHHHHHHHT-CEEEEEEECTTSC------CCHHHHHHHHH-HHCSEEEE-ESCHHHHHHHHHHHH
T ss_pred CCcc--cchHHHHHHHHHHHHhcC-cEEEEEEecCCcc------cCHHHHHHHhh-cCCcEEEE-ecCHHHHHHHHHHHH
Confidence 9999 88 8999999999999 9999877665433 35889999999 89999999 999999999999999
Q ss_pred HcCCCCCCeEEEeeCcccc------cccccC---hhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccC-CCCCCCC
Q 004136 254 RMGLVGKDSVWIVTNTVAN------ALDSLN---TTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSE-YPEEDHF 323 (771)
Q Consensus 254 ~~g~~~~~~~~i~~~~~~~------~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~ 323 (771)
++|+.++.|+||+++.... .+.... .......+++.++..+.... |.+++|.++|++++... +. . ..
T Consensus 233 ~~gl~~~~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~-p~~~~F~~~~~~~~~~~~~~-~-~~ 309 (441)
T 1jdp_A 233 RHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVK-PEFEKFSMEVKSSVEKQGLN-M-ED 309 (441)
T ss_dssp HTTCTTTTCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCC-HHHHHHHHHHHHHHHTTTCC-C-CS
T ss_pred HcCCCCCCEEEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCC-chHHHHHHHHHHHHhhCCCC-c-cc
Confidence 9999998899998873211 111111 11113456666766665555 89999999998874322 11 0 11
Q ss_pred CCchhhhhHhHHHHHHHHHHHhhcc---CCCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEee---CCceEE
Q 004136 324 HPSIHALRAHDSIKIITEAIGRLNY---NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV---GKKYKE 397 (771)
Q Consensus 324 ~~~~~a~~~YDav~~~a~Al~~~~~---~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~---~~~~~~ 397 (771)
.++.+++.+||||+++|+||+++.. ++.++++|.++|++++|+|++|+++||++|++. ..|+|++++ ++.+++
T Consensus 310 ~~~~~~~~~YdAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I~~~~~~~~g~~~~ 388 (441)
T 1jdp_A 310 YVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSVIAMTDVEAGTQEV 388 (441)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEEEEEEETTTTEEEE
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEEEecccCCCCceEE
Confidence 3566889999999999999999842 236889999999999999999999999999987 899999985 467999
Q ss_pred EEEecCCCC
Q 004136 398 LDFWLPNFG 406 (771)
Q Consensus 398 vg~w~~~~~ 406 (771)
||.|++..+
T Consensus 389 VG~~~~~~~ 397 (441)
T 1jdp_A 389 IGDYFGKEG 397 (441)
T ss_dssp EEEEETTTT
T ss_pred EEEEcCCCC
Confidence 999998754
No 6
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=5.8e-45 Score=396.03 Aligned_cols=357 Identities=15% Similarity=0.276 Sum_probs=295.5
Q ss_pred CcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCH-HHHHHHHHHHHhcCCeEEEEcCCchH
Q 004136 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDP-FQAATAAQELINKEKVKVIAGMETWE 108 (771)
Q Consensus 33 ~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~---~g~~i~l~~~D~~~~~-~~a~~~~~~li~~~~v~aviGp~~s~ 108 (771)
.+||||+++|+++..|.....|+++|+++||+++ +|++|++++.|+++++ ..+...+|+++ +++|.+||||.+|.
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~-~~~V~aiiG~~~S~ 81 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQIL-PKGVVSVLGPSSSP 81 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHG-GGCCSCEECCSSCH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHH-hcCcEEEECCCCch
Confidence 5799999999999999999999999999999987 5799999999999976 46667889998 67999999999995
Q ss_pred h-HHHHHHhhccCCccEEeecCCCCCCCccCCCCceE--EEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcch
Q 004136 109 E-TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYL--IRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (771)
Q Consensus 109 ~-~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~--fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (771)
. +.+++++++.+++|+|+++++ +. ....+|++ ||+.|++..++.++++++++++|++|++|+++++|| ..+
T Consensus 82 ~~~~a~~~i~~~~~ip~is~~a~--~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g--~~l 155 (393)
T 3om0_A 82 ASASTVSHICGEKEIPHIKVGPE--ET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECL--LRL 155 (393)
T ss_dssp HHHHHHHHHHHHHTCCEEECSCC--CC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHH--HHT
T ss_pred hHHHHHHHHHhccCCCeEeccCC--cC--ccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHH--HHH
Confidence 5 479999999999999999877 41 23568888 999999999999999999999999999999999998 776
Q ss_pred HHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEE
Q 004136 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (771)
Q Consensus 186 ~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (771)
.+.++ .+.+.| ++|.... ++ .. +|++.++.++++.++|+|++ .++..++..++++++++|+.++.|+||
T Consensus 156 ~~~~~-~~~~~g-~~v~~~~-~~-~~------~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~~~~i 224 (393)
T 3om0_A 156 EELVR-GFLISK-ETLSVRM-LD-DS------RDPTPLLKEIRDDKVSTIII-DANASISHLVLRKASELGMTSAFYKYI 224 (393)
T ss_dssp HHHHH-HHHHSS-SCEEEEE-CC--C------CCSHHHHHHHHHHTCSEEEE-ESCHHHHHHHHHHHHHTTTTSTTCEEE
T ss_pred HHHHH-hhhccC-CeEEEEe-cC-CC------CCHHHHHHHHHhcCCeEEEE-ECCHHHHHHHHHHHHHcCcccCCeEEE
Confidence 66554 466788 8887654 33 22 46899999999999999999 999999999999999999999999999
Q ss_pred eeCcccccccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHh
Q 004136 266 VTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (771)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~ 345 (771)
.++......... .......++.++....+.. |.+++|.++|+++|.+.+.......|+.+++.+|||++++++|+++
T Consensus 225 ~~~~~~~~~~l~--~~~~~~~~~~g~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~ 301 (393)
T 3om0_A 225 LTTMDFPILHLD--GIVEDSSNILGFSMFNTSH-PFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRE 301 (393)
T ss_dssp ECCTTGGGCCCT--TTCCSSCSEEEEECCCTTS-TTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred Eecccccccchh--hhhccCCcEEEEEEecCCc-cHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHH
Confidence 887654433221 1223456788888766655 8899999999999864332111234778999999999999999998
Q ss_pred hccC---------------CCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEeeCCceEEEEEecCCCCCccc
Q 004136 346 LNYN---------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKT 410 (771)
Q Consensus 346 ~~~~---------------~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~~~~~~~ 410 (771)
++.. |.++..|.++|++++|+|++|+++||++|++.+..|+|++++++++++||.|++..|+.++
T Consensus 302 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl~~~ 381 (393)
T 3om0_A 302 LNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTLAMN 381 (393)
T ss_dssp HTTTSCCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC------
T ss_pred HhhcccCcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCCcccc
Confidence 8641 4689999999999999999999999999999889999999999999999999999887755
No 7
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=1.3e-44 Score=393.80 Aligned_cols=360 Identities=19% Similarity=0.264 Sum_probs=304.3
Q ss_pred CCcEEEEEEEeCCC-cCchHHHHHHHHHHHHHhcCC---CCcEEEEEEecCC-CCHHHHHHHHHHHHhcCCeEEEEcCCc
Q 004136 32 EEVTKIGAIVDANS-QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGMET 106 (771)
Q Consensus 32 ~~~I~IG~i~p~s~-~~g~~~~~a~~~Av~~iN~~~---~g~~i~l~~~D~~-~~~~~a~~~~~~li~~~~v~aviGp~~ 106 (771)
+++||||+++|+++ ..|.....|+++|+++||+++ ++++|++++.|.. .|+..+...+|+++ +++|.+||||.+
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~-~~~V~aiiG~~~ 80 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQL-SLGVAAIFGPSH 80 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHH-HHCCSCEECCSS
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhh-hcCcEEEECCCC
Confidence 47899999999984 578899999999999999987 5789999998876 68999999999999 679999999999
Q ss_pred hHhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchH
Q 004136 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (771)
Q Consensus 107 s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (771)
|..+.+++++++.+++|+|+++++ ++.+++. .+|+||+.|++..++.++++++++++|+++++|+ +++|| ....
T Consensus 81 S~~~~a~~~~~~~~~ip~is~~~~--~~~l~~~-~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g--~~~~ 154 (395)
T 3h6g_A 81 SSSANAVQSICNALGVPHIQTRWK--HQVSDNK-DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTG--LIRL 154 (395)
T ss_dssp HHHHHHHHHHHHHTTCCEEECSCC--CCCTTCC-CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHH--HHHT
T ss_pred hhHHHHHHHHHhcCCCCeEeeccC--ccccccc-CceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhH--HHHH
Confidence 999999999999999999999998 8888764 5889999999999999999999999999999998 66789 8889
Q ss_pred HHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEe
Q 004136 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (771)
Q Consensus 187 ~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (771)
+.+++.+++.| ++|.... ++.+. +|+..++++++++++|+|++ .+...++..++++++++|+..+.|+|+.
T Consensus 155 ~~~~~~~~~~g-~~v~~~~-~~~~~------~d~~~~l~~i~~~~~~vi~~-~~~~~~~~~~~~qa~~~gl~~~~~~~i~ 225 (395)
T 3h6g_A 155 QELIKAPSRYN-LRLKIRQ-LPADT------KDAKPLLKEMKRGKEFHVIF-DCSHEMAAGILKQALAMGMMTEYYHYIF 225 (395)
T ss_dssp HHHHTGGGTSS-CEEEEEE-CCSSG------GGGHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCSTTCEEEE
T ss_pred HHHHHhhhcCC-ceEEEEE-eCCCc------hhHHHHHHHHhhcCCeEEEE-ECCHHHHHHHHHHHHHccccCCceEEEE
Confidence 99999999999 9998865 66554 67999999999999999999 9999999999999999999999999998
Q ss_pred eCcccccccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCC----CCCCchhhhhHhHHHHHHHHH
Q 004136 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEED----HFHPSIHALRAHDSIKIITEA 342 (771)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~a~~~YDav~~~a~A 342 (771)
+............ .....++.++....+.. |..++|.++|++++....|... ...++.+++.+|||++++++|
T Consensus 226 ~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~A 302 (395)
T 3h6g_A 226 TTLDLFALDVEPY--RYSGVNMTGFRILNTEN-TQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVA 302 (395)
T ss_dssp CCTTGGGBCCTTT--TTSCCEEEEEECSCTTS-HHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHH
T ss_pred ecCceeEechHHh--ccCccceEEEEEecCCc-HHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHH
Confidence 8653322211111 01112246666655555 8999999999987654433211 123677999999999999999
Q ss_pred HHhhcc------------CCCChHHHHHHHHcCceeceeeeEEEeC-CCCCCCCeEEEEEeeCCceEEEEEecCCCCCcc
Q 004136 343 IGRLNY------------NISSPEMLLRQMLSSDFSGLSGKIRFKD-GELLNADTLRIVNVVGKKYKELDFWLPNFGFSK 409 (771)
Q Consensus 343 l~~~~~------------~~~~~~~l~~~l~~~~f~G~tG~v~Fd~-~g~~~~~~~~I~~~~~~~~~~vg~w~~~~~~~~ 409 (771)
++++++ .|.++..|.++|++++|+|++|+++||+ +|++.+..+.|++++++++++||.|++..|+.+
T Consensus 303 l~~a~~~~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~ 382 (395)
T 3h6g_A 303 VQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNM 382 (395)
T ss_dssp HHTCTTCCCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETTTEECC
T ss_pred HHhhhcCCCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcCCCCccc
Confidence 999865 1468999999999999999999999998 999998899999999999999999999988765
Q ss_pred c
Q 004136 410 T 410 (771)
Q Consensus 410 ~ 410 (771)
.
T Consensus 383 ~ 383 (395)
T 3h6g_A 383 T 383 (395)
T ss_dssp C
T ss_pred c
Confidence 4
No 8
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=8.4e-45 Score=393.21 Aligned_cols=350 Identities=16% Similarity=0.253 Sum_probs=300.1
Q ss_pred CCCCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCC-CHHHHHHHHHHHHhcCCeEEEEcCCchH
Q 004136 30 NIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETWE 108 (771)
Q Consensus 30 ~~~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~-~~~~a~~~~~~li~~~~v~aviGp~~s~ 108 (771)
.++++||||+++|+++. ....|+++|+++||+++ +|++++.|+++ ++..+.+.+|+|+ +++|.+||||.+|.
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g---~l~~~~~D~~~~d~~~a~~~~~~l~-~~~V~aiiG~~~S~ 78 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP---KLLPQIDIVNISDSFEMTYRFCSQF-SKGVYAIFGFYERR 78 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS---EEEEEEEECCTTCHHHHHHHHHHHH-HTTCSCEEECCCHH
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC---ccceeeEecccCchhhHHHHHHHHH-hcCeEEEECCCCHH
Confidence 34689999999999964 88999999999999985 99999999886 9999999999999 56999999999999
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHH
Q 004136 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (771)
Q Consensus 109 ~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (771)
.+.+++++++.+++|+|++++ +.++ ..+|.||+.|+ ++.++++++++++|+++++|+ +++|| ....+.
T Consensus 79 ~~~a~~~~~~~~~iP~is~~~----~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g--~~~~~~ 146 (384)
T 3saj_A 79 TVNMLTSFCGALHVCFITPSF----PVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRG--LSVLQR 146 (384)
T ss_dssp HHHHHHHHHHHHTCCEEECSC----CCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTC--SHHHHH
T ss_pred HHHHHHHHhccCCCCeEeccc----cCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchh--HHHHHH
Confidence 999999999999999999853 4443 45678888887 899999999999999999999 66899 999999
Q ss_pred HHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeC
Q 004136 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (771)
Q Consensus 189 l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (771)
+++.+++.| ++|+..+.++... +++..+|.+++++++|+|++ .++..++..++++++++|+.++.|+||.++
T Consensus 147 ~~~~~~~~g-~~v~~~~~~~~~~------~d~~~~l~~ik~~~~~vii~-~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~ 218 (384)
T 3saj_A 147 VLDTAAEKN-WQVTAVNILTTTE------EGYRMLFQDLEKKKERLVVV-DCESERLNAILGQIVKLEKNGIGYHYILAN 218 (384)
T ss_dssp HHHHHHHHT-CEEEEEEGGGCCH------HHHHHTTTTCCSCSEEEEEE-ECCGGGHHHHHHHHHHTCCTTCEEEEEESS
T ss_pred HHHHhhhcC-ceEEEEEeccCCc------hhHHHHHHHHhccCCcEEEE-EcCHHHHHHHHHHHHHcCCCCCCcEEEEEC
Confidence 999999999 9999887554443 68999999999999999999 999999999999999999999999999988
Q ss_pred cccccccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHhhcc
Q 004136 269 TVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (771)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~~~ 348 (771)
.+...... ........++.++.+..+.. |.+++|.++|+++|..++|......++.+++++|||++++++|++++++
T Consensus 219 ~~~~~~~~--~~~~~~~~~v~~~~~~~~~~-~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~ 295 (384)
T 3saj_A 219 LGFMDIDL--NKFKESGANVTGFQLVNYTD-TIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRR 295 (384)
T ss_dssp SCGGGSCH--HHHHHTTCCEEEEECCCTTS-HHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccH--HHhhCCCcceEEEEeecCCC-hHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHh
Confidence 54332211 12223455688888776665 8999999999999877655333335678899999999999999998764
Q ss_pred C--------------------CCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEeeCCceEEEEEecCCCCCc
Q 004136 349 N--------------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFS 408 (771)
Q Consensus 349 ~--------------------~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~~~~~ 408 (771)
. |.++..|.++|++++|+|++|+++||++|++.+..|+|++++++++++||.|++..|+.
T Consensus 296 ~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~gl~ 375 (384)
T 3saj_A 296 QRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFV 375 (384)
T ss_dssp TTCCCCCCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEE
T ss_pred hccceecCCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCCCCcc
Confidence 1 36899999999999999999999999999999899999999999999999999988765
Q ss_pred c
Q 004136 409 K 409 (771)
Q Consensus 409 ~ 409 (771)
.
T Consensus 376 ~ 376 (384)
T 3saj_A 376 P 376 (384)
T ss_dssp E
T ss_pred c
Confidence 4
No 9
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=5.8e-44 Score=388.11 Aligned_cols=351 Identities=14% Similarity=0.201 Sum_probs=295.1
Q ss_pred CCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCC--CCcEEEEEEe--cC-CCCHHHHHHHHHHHHhcCCeEEEEcCCc
Q 004136 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIR--DH-NRDPFQAATAAQELINKEKVKVIAGMET 106 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~--~g~~i~l~~~--D~-~~~~~~a~~~~~~li~~~~v~aviGp~~ 106 (771)
+++|+||+++|.+ |.+...|+++||++||+++ .|.++++.+. ++ .+++..+.+.+|+++ +++|.|||||.+
T Consensus 3 P~~I~IG~lf~~~---~~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~V~aiiG~~~ 78 (389)
T 4gpa_A 3 PSSVQIGGLFIRN---TDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQY-SRGVFAIFGLYD 78 (389)
T ss_dssp CSEEEEEEEECTT---CHHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHH-HTTCSEEEECCC
T ss_pred CCeEEEEEEEcCC---ChHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHH-hcCCEEEEeCCc
Confidence 5789999999987 5778899999999999987 2445555444 43 468889999999999 789999999999
Q ss_pred hHhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchH
Q 004136 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (771)
Q Consensus 107 s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (771)
|..+.+++++++.++||+|+++++ .+.. ..|++ ++.|. +++++++++++|+|++|++||+++.++ . ..
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~--~~~~--~~~~~--~~~~~---~~~a~~~l~~~~~w~~vaii~~~d~~~--~-~~ 146 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFP--TEGE--SQFVL--QLRPS---LRGALLSLLDHYEWNCFVFLYDTDRGY--S-IL 146 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCC--CSSC--CSSEE--ECSCC---CHHHHHHHHHHTTCCEEEEEECSTTCS--H-HH
T ss_pred cHHHHHHHHHHHHhCCCceecccc--cccc--ccCCc--cccCC---HHHHHHHHHHHcCCcEEEEEEecchhh--H-HH
Confidence 999999999999999999998876 4422 34444 45554 357999999999999999999888775 4 46
Q ss_pred HHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEe
Q 004136 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (771)
Q Consensus 187 ~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (771)
+.+.+.+.+.| ++|...+.++... .++..+|.++++.++++|++ .++..++..++++|+++|+.++.|+|+.
T Consensus 147 ~~~~~~~~~~g-~~v~~~~~~~~~~------~d~~~~l~~i~~~~~~vIv~-~~~~~~~~~il~~a~~~g~~~~~~~~i~ 218 (389)
T 4gpa_A 147 QAIMEKAGQNG-WHVSAICVENFND------VSYRQLLEELDRRQEKKFVI-DCEIERLQNILEQIVSVGKHVKGYHYII 218 (389)
T ss_dssp HHHHHHHHTTT-CEEEEEECTTCCH------HHHHHHHHHHHHHTCCEEEE-ECCHHHHHHHHHHHHHHTCSBTTCEEEE
T ss_pred HHHHHHHHhcC-ceEEEEeecCCcc------hhHHHHHHHhhccCCcEEEE-EechhHHHHHHHHHHHhCCCCCceEEEE
Confidence 77888899999 9999887766554 78999999999999999999 9999999999999999999999999999
Q ss_pred eCcccccccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHhh
Q 004136 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (771)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~ 346 (771)
++.+...... ........++.++....+.. |.+++|.++|++.+...++. .+..++.+++++||||+++|+||+++
T Consensus 219 ~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~a~~YDAV~~~A~Al~~~ 294 (389)
T 4gpa_A 219 ANLGFKDISL--ERFIHGGANVTGFQLVDFNT-PMVTKLMDRWKKLDQREYPG-SETPPKYTSALTYDGVLVMAETFRSL 294 (389)
T ss_dssp CSSBGGGSCC--HHHHHHBCEEEEEECSCTTS-HHHHHHHHHHTTSCTTTSTT-TTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCccccchhh--hhhhhcccceEEEEeecCCC-hHHHHHHHHHHHHhhhhccc-CCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9887654432 33445667788888777766 89999999998877655433 24568889999999999999999987
Q ss_pred ccC--------------------CCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEeeCCceEEEEEecCCCC
Q 004136 347 NYN--------------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFG 406 (771)
Q Consensus 347 ~~~--------------------~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~~~ 406 (771)
..+ |.+|..|.++|++++|+|+||+|+||++|+|.+..|+|++++++++++||.|++..|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~g 374 (389)
T 4gpa_A 295 RRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDK 374 (389)
T ss_dssp HHTTCCCCCTTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTE
T ss_pred HhhcccccccCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCC
Confidence 542 346789999999999999999999999999998899999999999999999999988
Q ss_pred Cccc
Q 004136 407 FSKT 410 (771)
Q Consensus 407 ~~~~ 410 (771)
+.+.
T Consensus 375 l~~~ 378 (389)
T 4gpa_A 375 LVLI 378 (389)
T ss_dssp EEEC
T ss_pred eEEC
Confidence 7653
No 10
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=1.5e-44 Score=398.83 Aligned_cols=358 Identities=14% Similarity=0.171 Sum_probs=297.8
Q ss_pred CcEEEEEEEeCCC---cCchHHHH-HHHHHHHHHhcCC---CCcEEEEEEecC-----CCCHHHHHHHHHHHHhcCCeEE
Q 004136 33 EVTKIGAIVDANS---QMGKQAIT-AMKIAVQNFNSDS---RNHKLSLQIRDH-----NRDPFQAATAAQELINKEKVKV 100 (771)
Q Consensus 33 ~~I~IG~i~p~s~---~~g~~~~~-a~~~Av~~iN~~~---~g~~i~l~~~D~-----~~~~~~a~~~~~~li~~~~v~a 100 (771)
++|+||+++|+++ ..|.+... |+++|+++||+++ +|++|+++++|+ +|++..++..+.+++.+++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 4699999999983 56777777 9999999999997 589999999999 5566688888888887889999
Q ss_pred EEcCCchHhHHHHHHhhccCCccEEeecCCCCCCCccC-CCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEE------
Q 004136 101 IAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAI------ 173 (771)
Q Consensus 101 viGp~~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~-~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii------ 173 (771)
||||.+|..+.+++++++.+++|+|+++++ ++.+++ ..+||+||+.|++..++.++++++++++|++|++|
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~--~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~ 158 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAP--ALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRL 158 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCC--CGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEccccc--ccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCC
Confidence 999999999999999999999999999999 899988 46999999999999999999999999999999999
Q ss_pred EEeCCCCCCcchHHHHHHHHhc-cCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHH
Q 004136 174 YEDNVYGGDSGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252 (771)
Q Consensus 174 ~~~~~~g~~~~~~~~l~~~~~~-~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a 252 (771)
+++++|| .. .+.+.+.+.+ .| ++|...+.++... +++..+++++++ ++|+|++ ++...++..+++++
T Consensus 159 ~~~~~~g--~~-~~~~~~~~~~~~g-~~v~~~~~~~~~~------~d~~~~l~~i~~-~~~viv~-~~~~~~~~~~~~~a 226 (435)
T 1dp4_A 159 GDDRPCF--FI-VEGLYMRVRERLN-ITVNHQEFVEGDP------DHYPKLLRAVRR-KGRVIYI-CSSPDAFRNLMLLA 226 (435)
T ss_dssp SSCCHHH--HH-HHHHHHHHHHHHC-CEEEEEEECTTCG------GGHHHHHHHHHH-HCSEEEE-ESCHHHHHHHHHHH
T ss_pred CCcchHH--HH-HHHHHHHHHhhcC-eEEEEEEEecCch------hhHHHHHHHHHh-hCceEEE-ecChHHHHHHHHHH
Confidence 4555555 44 4567777777 89 9998877654333 679999999998 8999999 99999999999999
Q ss_pred HHcCCCCCCeEEEeeCccccccc---------------ccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCC
Q 004136 253 NRMGLVGKDSVWIVTNTVANALD---------------SLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEY 317 (771)
Q Consensus 253 ~~~g~~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 317 (771)
+++|+.++.++||.++.+..... .......++.++++.+.+..+.. +.+++|.++|++.+...+
T Consensus 227 ~~~g~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~ 305 (435)
T 1dp4_A 227 LNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDN-PEYLEFLKQLKLLADKKF 305 (435)
T ss_dssp HHTTCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCS-HHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCC-hhHHHHHHHHHHHhcCCC
Confidence 99999987789999987654320 00122345678988888765554 889999999988764211
Q ss_pred CCC-CCCCCchhhhhHhHHHHHHHHHHHhhcc---CCCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEe--e
Q 004136 318 PEE-DHFHPSIHALRAHDSIKIITEAIGRLNY---NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV--V 391 (771)
Q Consensus 318 ~~~-~~~~~~~~a~~~YDav~~~a~Al~~~~~---~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~--~ 391 (771)
... ....++.+++.+|||++++++||+++.. .+.++++|.++|++++|+|++|+++||++|++. ..|.|+++ .
T Consensus 306 ~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~~-~~~~i~~~~~~ 384 (435)
T 1dp4_A 306 NFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRNGDRD-TDFSLWDMDPE 384 (435)
T ss_dssp CCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTTSBBC-CCEEEEEECTT
T ss_pred CcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhCceeeccceeEEECCCCCcc-ceeEEEEecCC
Confidence 000 0113667889999999999999999832 136899999999999999999999999999987 79999999 5
Q ss_pred CCceEEEEEecCCCC
Q 004136 392 GKKYKELDFWLPNFG 406 (771)
Q Consensus 392 ~~~~~~vg~w~~~~~ 406 (771)
++++++||.|++..+
T Consensus 385 ~g~~~~vg~~~~~~~ 399 (435)
T 1dp4_A 385 TGAFRVVLNYNGTSQ 399 (435)
T ss_dssp TCCEEEEEEECTTTC
T ss_pred CCcEEEEEEecCCCc
Confidence 678999999998653
No 11
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=1.6e-42 Score=392.95 Aligned_cols=378 Identities=16% Similarity=0.270 Sum_probs=310.5
Q ss_pred CCcEEEEEEEeCCC-------------cCchHHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHHHh-
Q 004136 32 EEVTKIGAIVDANS-------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELIN- 94 (771)
Q Consensus 32 ~~~I~IG~i~p~s~-------------~~g~~~~~a~~~Av~~iN~~~---~g~~i~l~~~D~~~~~~~a~~~~~~li~- 94 (771)
+++|+||+++|+++ ..|.+...|+++|+++||+++ ||++|+++++|+++++..|++.+.++++
T Consensus 12 ~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l~~ 91 (555)
T 2e4u_A 12 EGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRA 91 (555)
T ss_dssp CCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHHhC
Confidence 57899999999983 257788999999999999987 6999999999999999999999988874
Q ss_pred -----------------------cCCeEEEEcCCchHhHHHHHHhhccCCccEEeecCCCCCCCccC-CCCceEEEeecC
Q 004136 95 -----------------------KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASN 150 (771)
Q Consensus 95 -----------------------~~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~-~~~p~~fr~~p~ 150 (771)
+++|.+||||.+|..+.+++++++.+++|+|+++++ ++.|++ ..|||+||+.|+
T Consensus 92 ~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 92 SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYAST--SAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp TC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTCTTEEESSCC
T ss_pred cCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcC--CCccCCcccCCCceeeCCC
Confidence 578999999999999999999999999999999999 899998 579999999999
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh-
Q 004136 151 DSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD- 229 (771)
Q Consensus 151 ~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~- 229 (771)
+..++.++++++++|+|++|++|++|++|| ....+.|++++++.| ++|+..+.++.... ..++..++.++++
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g--~~~~~~~~~~~~~~g-i~v~~~~~~~~~~~----~~~~~~~l~~i~~~ 242 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYG--ETGIEAFEQEARLRN-ICIATAEKVGRSNI----RKSYDSVIRELLQK 242 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTH--HHHHHHHHHHHHTTT-CEEEEEEEECTTCC----HHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHH--HHHHHHHHHHHHHCC-ccEEEEEEeCCCCC----hHHHHHHHHHHhcc
Confidence 999999999999999999999999999999 999999999999999 99999888875321 2679999999964
Q ss_pred CCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeCcccccccccChhhhhccccEEEEEeeccCCChhHHHHH---
Q 004136 230 KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFS--- 306 (771)
Q Consensus 230 ~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~--- 306 (771)
+++|+||+ .+...++..++++++++|+ .++||+++.|....... ......++|++++.++.... |.+++|.
T Consensus 243 s~a~vIi~-~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~-~~~~~~~~G~l~~~~~~~~i-pgf~~f~~~~ 316 (555)
T 2e4u_A 243 PNARVVVL-FMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIV-KGSEHVAYGAITLELASHPV-RQFDRYFQSL 316 (555)
T ss_dssp TTCCEEEE-ECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGT-TTCHHHHTTCEEEEECCCCC-HHHHHHHHTC
T ss_pred CCCCEEEE-EcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhh-ccchhhcceEEEEEeccCCC-CcHHHHHhhC
Confidence 69999999 9999999999999999998 36999999886532221 12235678999988765544 5555543
Q ss_pred ------------HHHHHhcccCCCC-------CC--------CCCCchhhhhHhHHHHHHHHHHHhhccC----------
Q 004136 307 ------------ALFRRNFTSEYPE-------ED--------HFHPSIHALRAHDSIKIITEAIGRLNYN---------- 349 (771)
Q Consensus 307 ------------~~~~~~~~~~~~~-------~~--------~~~~~~~a~~~YDav~~~a~Al~~~~~~---------- 349 (771)
+.|+..|.+..+. +. ...+..+++.+||||+++|+||+++..+
T Consensus 317 ~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~ 396 (555)
T 2e4u_A 317 NPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCD 396 (555)
T ss_dssp CTTTCTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCG
T ss_pred CcccCCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCCCcccc
Confidence 3355555443211 00 0114567889999999999999988541
Q ss_pred ---CCChHHHHH-HHHcCcee------ceeee-EEEeCCCCCCCCeEEEEEee--CC--ceEEEEEecCCCCCccccCCC
Q 004136 350 ---ISSPEMLLR-QMLSSDFS------GLSGK-IRFKDGELLNADTLRIVNVV--GK--KYKELDFWLPNFGFSKTSSKH 414 (771)
Q Consensus 350 ---~~~~~~l~~-~l~~~~f~------G~tG~-v~Fd~~g~~~~~~~~I~~~~--~~--~~~~vg~w~~~~~~~~~~~~~ 414 (771)
..++++|.+ +|++++|+ |.+|. |.||++|++. ..|+|++++ ++ .+++||.|++ .+.+.
T Consensus 397 ~~~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~--~l~i~---- 469 (555)
T 2e4u_A 397 AMKILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE--TLSLD---- 469 (555)
T ss_dssp GGTSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS--SEECC----
T ss_pred ccCCCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc--eEEEe----
Confidence 157889999 99999999 99996 9999999987 899999995 33 6899999985 22211
Q ss_pred ccccccCccccCCCCcceecCCCCCCCCCCcccc
Q 004136 415 NVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAM 448 (771)
Q Consensus 415 ~~~~~~~~~~~~~~~~~i~Wp~~~~~~~p~~~~~ 448 (771)
. ..|.|+++ .+|+..+-
T Consensus 470 -----------~---~~I~W~~~---~~P~S~CS 486 (555)
T 2e4u_A 470 -----------V---DSIHWSRN---SVPTSQCS 486 (555)
T ss_dssp -----------G---GGCCCTTS---SCCCCCSS
T ss_pred -----------c---cccccCCC---CCcceeeC
Confidence 1 56999883 67766543
No 12
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=5.1e-43 Score=379.45 Aligned_cols=320 Identities=19% Similarity=0.295 Sum_probs=269.5
Q ss_pred CCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCC--CcEEEEEEecCCCCHHHHHHHHHH-HHhcCCeEEEEc-----
Q 004136 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSR--NHKLSLQIRDHNRDPFQAATAAQE-LINKEKVKVIAG----- 103 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~--g~~i~l~~~D~~~~~~~a~~~~~~-li~~~~v~aviG----- 103 (771)
+++||||+++|++ ....|+++|++++|++++ +++++++..|+++||.+++..+++ |+ +++|.+|||
T Consensus 3 ~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~~~~~l~~~~~d~~~d~~~a~~~~~~~Li-~~~V~aiiG~~~~~ 76 (384)
T 3qek_A 3 PKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALSVCEDLI-SSQVYAILVSHPPA 76 (384)
T ss_dssp CEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCCSSEEEEEEEEECCSSHHHHHHHHHHHTG-GGTEEEEEECC---
T ss_pred ceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccCCceEEEEEEecccCCHHHHHHHHHHHHH-HcCceEEEEecCCC
Confidence 5789999999997 689999999999999873 678999999999999999977666 78 469999999
Q ss_pred CCchHhHHHHHHhhccCCccEEeecCCCCCCCccC-CCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCC
Q 004136 104 METWEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182 (771)
Q Consensus 104 p~~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~-~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~ 182 (771)
|.+|..+.+++++++.+++|+|+++++ ++.+++ ..||++||+.|++..++.++++++++++|++|++|++|++||
T Consensus 77 ~~~s~~~~a~~~~~~~~~iP~is~~~~--~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G-- 152 (384)
T 3qek_A 77 PTDHLTPTPISYTAGFYRIPVIGLTTR--MSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEG-- 152 (384)
T ss_dssp -----CCHHHHHHHHTTTCCEEESSCC--CGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH--
T ss_pred CccchhHHHHHHHHhcCCCCEEecccC--chhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCccc--
Confidence 667888899999999999999999999 888987 678999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhccCCeEEE---------------------EeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecC
Q 004136 183 SGKLALLAEALQNVSSSEIQ---------------------SRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS 241 (771)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~i~---------------------~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~ 241 (771)
....+.|++++++.| +++. ....+..+. +++..++.+++++++|+|++ +++
T Consensus 153 ~~~~~~~~~~~~~~g-~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~------~d~~~~l~~i~~~~~~vii~-~~~ 224 (384)
T 3qek_A 153 RAAQKKLETLLEGKE-SKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGT------KNLTALLLEAKELEARVIIL-SAS 224 (384)
T ss_dssp HHHHHHHHHHHC---------------CCSCCCCCCCCEEEEEEEECTTC------SCCHHHHHHHHTSSCCEEEE-ECC
T ss_pred HHHHHHHHHHHHhcc-CccccccccccceeeeccccCcccceecccCCch------hhHHHHHHHHHhcCCcEEEE-ECC
Confidence 999999999999998 7542 111222222 46899999999999999999 999
Q ss_pred hhHHHHHHHHHHHcCCCCCCeEEEeeCcccccccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCC
Q 004136 242 LDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEED 321 (771)
Q Consensus 242 ~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 321 (771)
..++..++++|+++|+++++|+||+++.+.... ......+|++++..+.+..
T Consensus 225 ~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~-----~~~~~~~g~lg~~~~~~~~----------------------- 276 (384)
T 3qek_A 225 EDDATAVYKSAAMLDMTGAGYVWLVGEREISGS-----ALRYAPDGIIGLQLINGKN----------------------- 276 (384)
T ss_dssp HHHHHHHHHHHHHTTCSSTTCEEECCSGGGSGG-----GGSSCCTTCEEEEETTTTC-----------------------
T ss_pred HHHHHHHHHHHHHcCCccCCeEEEEeccccccc-----cccccCCccEEEEEcCCCc-----------------------
Confidence 999999999999999999889999999875332 1235678999998765432
Q ss_pred CCCCchhhhhHhHHHHHHHHHHHhhcc----------------CCCChHHHHHHHHcCce-eceeeeEEEeCCCCCCCCe
Q 004136 322 HFHPSIHALRAHDSIKIITEAIGRLNY----------------NISSPEMLLRQMLSSDF-SGLSGKIRFKDGELLNADT 384 (771)
Q Consensus 322 ~~~~~~~a~~~YDav~~~a~Al~~~~~----------------~~~~~~~l~~~l~~~~f-~G~tG~v~Fd~~g~~~~~~ 384 (771)
.++.+||||+++++|++++.. .|..+..|.+.+++++| +|++|++.||++|++.+..
T Consensus 277 ------~~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~ 350 (384)
T 3qek_A 277 ------ESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQ 350 (384)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCC
T ss_pred ------hhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCccc
Confidence 257899999999999998752 13467889999999998 9999999999999997799
Q ss_pred EEEEEeeCCceEEEEEecC
Q 004136 385 LRIVNVVGKKYKELDFWLP 403 (771)
Q Consensus 385 ~~I~~~~~~~~~~vg~w~~ 403 (771)
|+|++++++++++||.|+.
T Consensus 351 ~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 351 YSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp EEEEEEETTEEEEEEEECS
T ss_pred EEEEEEcCCceEEEEEEeC
Confidence 9999999999999999984
No 13
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=2.6e-42 Score=382.65 Aligned_cols=355 Identities=16% Similarity=0.244 Sum_probs=297.8
Q ss_pred CCcEEEEEEEeCC------------Cc-CchHHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHHHhc
Q 004136 32 EEVTKIGAIVDAN------------SQ-MGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINK 95 (771)
Q Consensus 32 ~~~I~IG~i~p~s------------~~-~g~~~~~a~~~Av~~iN~~~---~g~~i~l~~~D~~~~~~~a~~~~~~li~~ 95 (771)
+++|.||+++|++ .. .|.+...|+++|+||||+++ ||++|+++++|+++++..|++.+.+|+++
T Consensus 11 ~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll~~ 90 (479)
T 3sm9_A 11 EGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRA 90 (479)
T ss_dssp CCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHHhC
Confidence 5789999999996 12 68899999999999999998 69999999999999999999999999965
Q ss_pred ------------------------CCeEEEEcCCchHhHHHHHHhhccCCccEEeecCCCCCCCccC-CCCceEEEeecC
Q 004136 96 ------------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASN 150 (771)
Q Consensus 96 ------------------------~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~-~~~p~~fr~~p~ 150 (771)
++|.+||||.+|..+.+++++++.+++|+|+++++ ++.+++ ..+|++||+.|+
T Consensus 91 ~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 91 SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYAST--SAKLSDKSRYDYFARTVPP 168 (479)
T ss_dssp CC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTTTTEEESSCC
T ss_pred CCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcC--CccccCcccCCCeEEeCCc
Confidence 47999999999999999999999999999999999 999998 579999999999
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHH-HHhhh
Q 004136 151 DSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGEL-KKVQD 229 (771)
Q Consensus 151 ~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l-~~l~~ 229 (771)
+..++.++++++++|+|++|++|++|++|| ....+.|++++++.| +||+..+.++.... ..++..++ +.+++
T Consensus 169 d~~~~~a~~~ll~~fgw~~V~ii~~dd~~G--~~~~~~~~~~~~~~G-i~v~~~~~i~~~~~----~~d~~~~l~~~i~~ 241 (479)
T 3sm9_A 169 DFYQAKAMAEILRFFNWTYVSTVASEGDYG--ETGIEAFEQEARLRN-ISIATAEKVGRSNI----RKSYDSVIRELLQK 241 (479)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHHHHHHHHTTT-CEEEEEEEECC--C----HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhh--HHHHHHHHHHHHHCC-ceEEEEEEcCCCCC----hHHHHHHHHHHHhc
Confidence 999999999999999999999999999999 999999999999999 99999988875431 25788888 66888
Q ss_pred CCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeCcccccccccChhhhhccccEEEEEeeccCCChhHHHHHHH-
Q 004136 230 KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL- 308 (771)
Q Consensus 230 ~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~- 308 (771)
+++++|++ +++..++..++++++++|+. ++||+++.|........ .....+.|++++.++..+. |.+++|...
T Consensus 242 s~a~vIi~-~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~i-pgf~~fl~~~ 315 (479)
T 3sm9_A 242 PNARVVVL-FMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK-GSEHVAYGAITLELASQPV-RQFDRYFQSL 315 (479)
T ss_dssp TTCCEEEE-ECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT-TCTTTTTTCEEEEECCCCC-HHHHHHHHTC
T ss_pred CCCeEEEE-EcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc-cccccCceEEEEEeccCCC-cchhhHhhcc
Confidence 89999999 99999999999999999998 49999999875322111 1225679999999988877 888888654
Q ss_pred --------------HHHhcccCCCCCC----CC-----------CCchhhhhHhHHHHHHHHHHHhhcc--C--------
Q 004136 309 --------------FRRNFTSEYPEED----HF-----------HPSIHALRAHDSIKIITEAIGRLNY--N-------- 349 (771)
Q Consensus 309 --------------~~~~~~~~~~~~~----~~-----------~~~~~a~~~YDav~~~a~Al~~~~~--~-------- 349 (771)
|...|.+...... .| .........||||+++|+||+++.. +
T Consensus 316 ~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~ 395 (479)
T 3sm9_A 316 NPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCD 395 (479)
T ss_dssp CTTTCTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCH
T ss_pred CcCcCCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCCCcCCC
Confidence 2333443321100 11 1123346899999999999998753 1
Q ss_pred ---CCChHHHH-HHHHcCceece------ee-eEEEeCCCCCCCCeEEEEEeeC----CceEEEEEec
Q 004136 350 ---ISSPEMLL-RQMLSSDFSGL------SG-KIRFKDGELLNADTLRIVNVVG----KKYKELDFWL 402 (771)
Q Consensus 350 ---~~~~~~l~-~~l~~~~f~G~------tG-~v~Fd~~g~~~~~~~~I~~~~~----~~~~~vg~w~ 402 (771)
..++++|. ++|++++|.+. +| .|.||++|++. ..|+|++++. ..+++||.|+
T Consensus 396 ~~~~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~-~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 396 AMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGM-GRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp HHHSCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCC-CCEEEEEEEESSSCEEEEEEEEES
T ss_pred CCCCcChHHHHHHHhcceeeccccCccccCCCeEEECCCCCcc-cceEEEEEEECCCcEEEEEEEEEe
Confidence 24688999 99999999987 45 89999999997 8999999863 3578999997
No 14
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=6.4e-41 Score=373.10 Aligned_cols=359 Identities=18% Similarity=0.292 Sum_probs=299.6
Q ss_pred CCCcEEEEEEEeCCC-----------------cCchHHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHH
Q 004136 31 IEEVTKIGAIVDANS-----------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQ 90 (771)
Q Consensus 31 ~~~~I~IG~i~p~s~-----------------~~g~~~~~a~~~Av~~iN~~~---~g~~i~l~~~D~~~~~~~a~~~~~ 90 (771)
.+++|.||++||.+. ..|.+...|+.+||||||+++ ||++|+++++|+|+++..|++.+.
T Consensus 14 ~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a~ 93 (496)
T 3ks9_A 14 MDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSI 93 (496)
T ss_dssp ECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHHH
T ss_pred cCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHHH
Confidence 368899999999861 145788999999999999998 799999999999999999999999
Q ss_pred HHH----------------------------hcCCeEEEEcCCchHhHHHHHHhhccCCccEEeecCCCCCCCccC-CCC
Q 004136 91 ELI----------------------------NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRW 141 (771)
Q Consensus 91 ~li----------------------------~~~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~-~~~ 141 (771)
+++ .+++|.+||||.+|..+.+++++++.+++|+|+++++ ++.+++ ..+
T Consensus 94 ~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~--~~~lsd~~~~ 171 (496)
T 3ks9_A 94 EFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSAT--SIDLSDKTLY 171 (496)
T ss_dssp HHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTC
T ss_pred HHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcC--CccccCccCC
Confidence 998 3678999999999999999999999999999999999 999998 579
Q ss_pred ceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHH
Q 004136 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (771)
Q Consensus 142 p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~ 221 (771)
|++||+.|++..++.++++++++++|++|++|++|++|| +...+.+++++++.| +||+..+.++... ...++.
T Consensus 172 p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G--~~~~~~~~~~~~~~G-i~v~~~~~i~~~~----~~~d~~ 244 (496)
T 3ks9_A 172 KYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYG--ESGMDAFKELAAQEG-LSIAHSDKIYSNA----GEKSFD 244 (496)
T ss_dssp TTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHHHHHHHHHTT-CEEEEEEEECTTC----CHHHHH
T ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHH--HHHHHHHHHHHHHcC-ceEEEEEEECCCC----CHHHHH
Confidence 999999999999999999999999999999999999999 999999999999999 9999988776432 126899
Q ss_pred HHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeCcccccccccChhhhhccccEEEEEeeccCCC
Q 004136 222 GELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDS 299 (771)
Q Consensus 222 ~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 299 (771)
.+++++++. ++++|++ ++...++..++++++++|++++ +.||+++.|........ .....+.|+++++++..+.
T Consensus 245 ~~l~~i~~~~~~a~vii~-~~~~~~~~~l~~~~~~~g~~~k-~~~i~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~i- 320 (496)
T 3ks9_A 245 RLLRKLRERLPKARVVVC-FCEGMTVRGLLSAMRRLGVVGE-FSLIGSDGWADRDEVIE-GYEVEANGGITIKLQSPEV- 320 (496)
T ss_dssp HHHHHHHTTTTTTCEEEE-ECCHHHHHHHHHHHHHHTCCSC-CEEEECTTTTTCHHHHT-TCHHHHTTCEEEEECCCCC-
T ss_pred HHHHHHHhccCceEEEEE-ecChHHHHHHHHHHHHhCCCCc-EEEEEechhcccccccc-ccccccCceEEEeccCCcC-
Confidence 999999975 8999999 9999999999999999999875 57899998865332222 2335688999999988887
Q ss_pred hhHHHHHHH---------------HHHhcccCCCCC--------CCCC----------CchhhhhHhHHHHHHHHHHHhh
Q 004136 300 SPYKEFSAL---------------FRRNFTSEYPEE--------DHFH----------PSIHALRAHDSIKIITEAIGRL 346 (771)
Q Consensus 300 ~~~~~f~~~---------------~~~~~~~~~~~~--------~~~~----------~~~~a~~~YDav~~~a~Al~~~ 346 (771)
|.+++|... |...|.+..+.. ..|. ........|+||+++|+||+++
T Consensus 321 pgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m 400 (496)
T 3ks9_A 321 RSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNM 400 (496)
T ss_dssp HHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cchHhHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 888888755 333444432210 0111 1112246999999999999987
Q ss_pred ccC-------------CCChHHHHHHHHcCceeceee-eEEEeCCCCCCCCeEEEEEeeC-----CceEEEEEecC
Q 004136 347 NYN-------------ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVG-----KKYKELDFWLP 403 (771)
Q Consensus 347 ~~~-------------~~~~~~l~~~l~~~~f~G~tG-~v~Fd~~g~~~~~~~~I~~~~~-----~~~~~vg~w~~ 403 (771)
..+ ...+++|.++|++++|.+.+| .|.||++|+.. ..|+|++++. ..+++||.|+.
T Consensus 401 ~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~~ 475 (496)
T 3ks9_A 401 HHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWHE 475 (496)
T ss_dssp HHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCC-CEEEEEEEEECC--CEEEEEEEEEET
T ss_pred HhccCCCCCCCCcCCCCCCHHHHHHHHHhcCCcCCCCCEEEECCCCCcc-ceEEEEEEEECCCCCEEEEEEEEEeC
Confidence 421 236789999999999999999 79999999987 8999999863 35789999973
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=3.8e-42 Score=382.38 Aligned_cols=359 Identities=18% Similarity=0.297 Sum_probs=272.5
Q ss_pred CCcEEEEEEEeCCC-------------cCchHHHHHHHHHHHHHhcCC---CCcEEEEEEecCCCCHHHHHHHHHHHHhc
Q 004136 32 EEVTKIGAIVDANS-------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINK 95 (771)
Q Consensus 32 ~~~I~IG~i~p~s~-------------~~g~~~~~a~~~Av~~iN~~~---~g~~i~l~~~D~~~~~~~a~~~~~~li~~ 95 (771)
+++|+||+++|+++ ..|.+...|+++|+||||+++ ||++|+++++|+|+++..+++.+.+++++
T Consensus 14 ~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll~~ 93 (481)
T 3mq4_A 14 EGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQA 93 (481)
T ss_dssp CCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGGGG
T ss_pred CCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHHhC
Confidence 57899999999983 368899999999999999998 69999999999999999999999999864
Q ss_pred ----------------------CCeEEEEcCCchHhHHHHHHhhccCCccEEeecCCCCCCCccC-CCCceEEEeecCcH
Q 004136 96 ----------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDS 152 (771)
Q Consensus 96 ----------------------~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~-~~~p~~fr~~p~~~ 152 (771)
++|.+||||.+|..+.+++++++.+++|+|+++++ ++.+++ ..||++||+.|++.
T Consensus 94 ~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~psd~ 171 (481)
T 3mq4_A 94 LIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYAST--APELSDDRRYDFFSRVVPPDS 171 (481)
T ss_dssp GSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCC--CGGGGCTTTTTTEEESSCCTH
T ss_pred CcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccC--CccccCcccCCceEEecCchH
Confidence 68999999999999999999999999999999999 999998 67999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhc-cCCeEEEEeeecCCCCCCCCchHHHHHHHHHhh-hC
Q 004136 153 EQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-DK 230 (771)
Q Consensus 153 ~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~-~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~-~~ 230 (771)
.++.++++++++|+|++|++|++|++|| +...+.|++.+++ .| +||+..+.++......+ .++..++.+++ ++
T Consensus 172 ~~~~a~~~ll~~fgw~~V~li~~d~~~G--~~~~~~~~~~~~~~~G-i~va~~~~i~~~~~~~~--~d~~~~l~~i~~~s 246 (481)
T 3mq4_A 172 FQAQAMVDIVKALGWNYVSTLASEGSYG--EKGVESFTQISKEAGG-LSIAQSVRIPQERKDRT--IDFDRIIKQLLDTP 246 (481)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC---CHHH--HHHHHHHHHCC---CC-CEECCCCCCCCC--------CCSHHHHCCCCC-
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEcchhH--HHHHHHHHHHHHHhCC-EEEEEEEEcCCCCccch--HHHHHHHHHHHhcC
Confidence 9999999999999999999999999999 9989999988875 78 99998888765432111 25788899988 57
Q ss_pred CceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeCcccccccccChhhhhccccEEEEEeeccCCChhHHHHHHH--
Q 004136 231 QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSAL-- 308 (771)
Q Consensus 231 ~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~-- 308 (771)
++|+|++ +++..++..++++++++|+.++ ++||+++.|....... ......+.|++++.++..+. |.+++|...
T Consensus 247 ~a~vIi~-~~~~~~~~~l~~~~~~~g~~~~-~~wI~s~~w~~~~~~~-~~~~~~~~G~l~~~~~~~~i-pgf~~fl~~~~ 322 (481)
T 3mq4_A 247 NSRAVVI-FANDEDIKQILAAAKRADQVGH-FLWVGSDSWGSKINPL-HQHEDIAEGAITIQPKRATV-EGFDAYFTSRT 322 (481)
T ss_dssp ---CEEE-CCCSSHHHHHC----------C-CCEEEC------------------CCCEEEEECCCCC-HHHHHHHHTCC
T ss_pred CCEEEEE-EEChHHHHHHHHHHHHccCCcc-eEEEEECccccccccc-cccchhhccEEEEecCcCcc-ccHHHHhhcCC
Confidence 9999999 9999999999999999999873 5899999987543222 12346789999999988877 888888654
Q ss_pred -------------HHHhcccCCCC-----------CCCC---------CCchhhhhHhHHHHHHHHHHHhhccC------
Q 004136 309 -------------FRRNFTSEYPE-----------EDHF---------HPSIHALRAHDSIKIITEAIGRLNYN------ 349 (771)
Q Consensus 309 -------------~~~~~~~~~~~-----------~~~~---------~~~~~a~~~YDav~~~a~Al~~~~~~------ 349 (771)
|...|.+.... +.+. .........||||+++|+||+++..+
T Consensus 323 p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~ 402 (481)
T 3mq4_A 323 LENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYR 402 (481)
T ss_dssp TTTCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred cCcCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 23333333211 0000 11134567999999999999987531
Q ss_pred -------CCChHHHHHHHHcCceeceee-eEEEeCCCCCCCCeEEEEEeeC-----CceEEEEEec
Q 004136 350 -------ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVG-----KKYKELDFWL 402 (771)
Q Consensus 350 -------~~~~~~l~~~l~~~~f~G~tG-~v~Fd~~g~~~~~~~~I~~~~~-----~~~~~vg~w~ 402 (771)
..++++|.++|++++|.+.+| .|.||++|++. ..|+|++++. ..+++||.|+
T Consensus 403 ~~c~~~~~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 403 GVCPEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAP-GRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp -CCHHHHTSCHHHHHHHHHTCEEECTTSSEEECCTTSCCC-CEEEEEEEC-----CCCEEEEEEEE
T ss_pred CCCCCCCCcCHHHHHHHHhcceeecCCCCEEEECCCCCCc-eeEEEEEEEECCCCcEEEEEEEEEc
Confidence 246789999999999999999 89999999987 8999999862 2688999997
No 16
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=7.7e-39 Score=347.20 Aligned_cols=350 Identities=19% Similarity=0.184 Sum_probs=297.7
Q ss_pred CCcEEEEEEEeCCCc--CchHHHHHHHHHHHHHhcCC--CC-cEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCc
Q 004136 32 EEVTKIGAIVDANSQ--MGKQAITAMKIAVQNFNSDS--RN-HKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~--~g~~~~~a~~~Av~~iN~~~--~g-~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 106 (771)
+++|+||+++|+++. .|.....|+++|++++|+++ .| ++++++++|+++++..+.+.+++|+.+++|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 478999999999963 47788999999999999998 24 99999999999999999999999996679999999999
Q ss_pred hHhHHHHHHhhccCCccEEeecCCCCCCCccC-CCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcch
Q 004136 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (771)
Q Consensus 107 s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~-~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (771)
|..+.+++++++..++|+|++.++ ++.++. ..+||+||+.|++..++.++++++.+++|+++++|+.+++|| ...
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~--~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g--~~~ 158 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPL--TDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYG--QSA 158 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCC--CGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHH--HHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCC--chhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHh--HHH
Confidence 999999999999999999999988 788874 678999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhcc--CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeE
Q 004136 186 LALLAEALQNV--SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (771)
Q Consensus 186 ~~~l~~~~~~~--g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~ 263 (771)
.+.+++.+++. | ++++....++.+. .++...++++++.++|+|++ .+...++..++++++++|+... .
T Consensus 159 ~~~~~~~l~~~~~g-~~vv~~~~~~~~~------~d~~~~~~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~--~ 228 (387)
T 3i45_A 159 VARFKELLLAARPE-VTFVAEQWPALYK------LDAGPTVQALQQAEPEGLFN-VLFGADLPKFVREGRVRGLFAG--R 228 (387)
T ss_dssp HHHHHHHHHHHCTT-CEEEEEECCCTTC------CCHHHHHHHHHHTCCSEEEE-CCCTTHHHHHHHHHHHHTSSTT--C
T ss_pred HHHHHHHHHHhCCC-cEEEeeecCCCCC------cCHHHHHHHHHhCCCCEEEE-cCccHHHHHHHHHHHHcCCCCC--C
Confidence 99999999998 8 8998887777655 56999999999999999999 9999999999999999999655 3
Q ss_pred EEeeCccc--ccccccChhhhhccccEEEEEe-eccCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHH
Q 004136 264 WIVTNTVA--NALDSLNTTVISSMEGTLGIKS-YYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIIT 340 (771)
Q Consensus 264 ~i~~~~~~--~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a 340 (771)
++.+.... ...... .....+|++.... +....+|..++|.++|+++| +..|+.+++.+|||+++++
T Consensus 229 ~i~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~p~~~~~~~Yda~~~~a 297 (387)
T 3i45_A 229 QVVSMLTGEPEYLNPL---KDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARW--------KEDPFVGSLVGYNTLTAMA 297 (387)
T ss_dssp EEEEEEEESHHHHGGG---GGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHH
T ss_pred eEEeecCCChHHHHHh---hhhccCceEEecccccCCCCHHHHHHHHHHHHHH--------CCCCCcHHHHHHHHHHHHH
Confidence 44333221 111111 1234677766533 33234589999999999988 4457789999999999999
Q ss_pred HHHHhhccCCCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEee-CCceEEEEEecCCCCCc
Q 004136 341 EAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKELDFWLPNFGFS 408 (771)
Q Consensus 341 ~Al~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~-~~~~~~vg~w~~~~~~~ 408 (771)
+|++++++ .+++.|+++|++++|+|++|+++|++++++......|.+++ +++..+++.|.+..+..
T Consensus 298 ~Al~~ag~--~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~~~~~~ 364 (387)
T 3i45_A 298 VAFEKAGG--TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDGGS 364 (387)
T ss_dssp HHHHHHTS--CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECGGG
T ss_pred HHHHHhCC--CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEEeCchh
Confidence 99999987 89999999999999999999999997555555788888875 56678999998766544
No 17
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=2.2e-38 Score=341.11 Aligned_cols=350 Identities=18% Similarity=0.229 Sum_probs=293.1
Q ss_pred CCcEEEEEEEeCCC---cCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCC-CHHHHHHHHHHHHhcCCeEEEEcCCch
Q 004136 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETW 107 (771)
Q Consensus 32 ~~~I~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~-~~~~a~~~~~~li~~~~v~aviGp~~s 107 (771)
.++||||+++|+|+ ..|.....|+++|++++|..-+|++|+++++|+.+ +|..++..+++|+.+++|.+||||.+|
T Consensus 3 Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~nggi~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~~~S 82 (371)
T 4f06_A 3 ADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNKVAGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGLYFT 82 (371)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEECCSH
T ss_pred CCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 47899999999995 46889999999999999932278999999999975 899999999999988899999999999
Q ss_pred HhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHH
Q 004136 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (771)
Q Consensus 108 ~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (771)
..+.+++++++..++|+|+++++ ++.++.. .||+||+.|++..++.++++++++.+|+++++|+.+++|| ....+
T Consensus 83 ~~~~a~~~~~~~~~vp~i~~~a~--~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g--~~~~~ 157 (371)
T 4f06_A 83 PNAMAVAPLLQEAKVPMVVMNAA--TSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPG--IDAET 157 (371)
T ss_dssp HHHHHHGGGHHHHTCCEEESSCC--CGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHH
T ss_pred cchHHHHHHHHhhcCCccccccc--cchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccc--hhHHH
Confidence 99999999999999999999998 7888664 4899999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEee
Q 004136 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (771)
Q Consensus 188 ~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (771)
.+++.+++.| ++|+..+.++.+. +|++.++.++++.++|+|++..........++++++++|+....+.++.+
T Consensus 158 ~~~~~~~~~g-~~vv~~~~~~~~~------~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 230 (371)
T 4f06_A 158 AFKKTFEAEG-GKVVEAVRMPLST------TDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMST 230 (371)
T ss_dssp HHHHHHHHTT-CEEEEEEEECTTC------CCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEE
T ss_pred HHHHHHHhcC-CceEEEEecCccc------ccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEe
Confidence 9999999999 9999999998876 67999999999999999987234557788899999999998766666665
Q ss_pred CcccccccccChhhhhccccEEEEEeecc-CCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHhh
Q 004136 268 NTVANALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (771)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~ 346 (771)
......... .......+|++...++.+ ..+|..++|.++|+++|... ..++.+++.+||+++++++|+++.
T Consensus 231 ~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~------~~~~~~a~~~Yda~~~l~~Ai~~~ 302 (371)
T 4f06_A 231 GDVVTEPDL--PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKL------DEVTMTSVAAYDGARLIYKMIEAT 302 (371)
T ss_dssp GGGGCGGGH--HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCG------GGCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHH--HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCC------CCccchHHHHHHHHHHHHHHHHHh
Confidence 543322111 122356678777666543 33588999999999887321 246788999999999999999964
Q ss_pred ccCCCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEee--CCceE--EEEEec
Q 004136 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV--GKKYK--ELDFWL 402 (771)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~--~~~~~--~vg~w~ 402 (771)
... .+++.++++|++++|+|++|+++||++++.....+.|.+++ +|+|+ .++.+.
T Consensus 303 ag~-~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~v~~~~~~~~ 361 (371)
T 4f06_A 303 SGK-SDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKLINRELETFK 361 (371)
T ss_dssp TTS-CCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred cCC-CCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEEEEEEEEEEe
Confidence 332 79999999999999999999999998777666778888886 67764 344443
No 18
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=1.2e-38 Score=349.54 Aligned_cols=338 Identities=10% Similarity=0.062 Sum_probs=283.5
Q ss_pred CCcEEEEEEEeCCCc---CchHHHHHHHHHHHHHhcCC--CCcEEEEEEecCC-CCHHHHHHHHHHHHhcCCeEEEEcCC
Q 004136 32 EEVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGME 105 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~~~--~g~~i~l~~~D~~-~~~~~a~~~~~~li~~~~v~aviGp~ 105 (771)
.++|+||+++|+|+. .|.....|+++|+++||+++ .|++|+++++|++ +++..+.+.+++|+.+++|.+||||.
T Consensus 12 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG~~ 91 (419)
T 3h5l_A 12 SDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIAGY 91 (419)
T ss_dssp -CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEECSC
T ss_pred CCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEccc
Confidence 478999999999964 58899999999999999998 4899999999987 69999999999999779999999999
Q ss_pred chHhHHHHHHhhccCCccEEeecCCCCCCCcc-----C-CCCceEEEeecCcHHHHHHHHHHHHHc--------CCeEEE
Q 004136 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSM-----S-RRWPYLIRMASNDSEQMKCIADLARKY--------NWRRVA 171 (771)
Q Consensus 106 ~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~-----~-~~~p~~fr~~p~~~~~~~a~~~~l~~~--------~w~~v~ 171 (771)
+|..+.+++++++.+++|+|++++. +.+. + ..|+|+||+.|++..++.+++++++++ +|++++
T Consensus 92 ~s~~~~a~~~~~~~~~ip~i~~~~~---~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va 168 (419)
T 3h5l_A 92 NLENGTALHDVAADAGVIAMHANTV---AVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIA 168 (419)
T ss_dssp CSSCSCHHHHHHHHHTCEEEECCCC---HHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEE
T ss_pred cchhHHHhHHHHHHcCCeEEEcCcc---hhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEE
Confidence 9999999999999999999997543 4332 2 468999999999999999999999876 899999
Q ss_pred EEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecC-hhHHHHHHH
Q 004136 172 AIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS-LDMTIHLFT 250 (771)
Q Consensus 172 ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~-~~~~~~il~ 250 (771)
+|+++++|| ....+.+++.+++.| ++|+..+.++.+. +|+..++.++++.++|+|++ .+. +.++..+++
T Consensus 169 il~~~~~~g--~~~~~~~~~~~~~~g-~~vv~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~ 238 (419)
T 3h5l_A 169 IITGPGIYS--VNIANAIRDGAGEYG-YDVSLFETVAIPV------SDWGPTLAKLRADPPAVIVV-THFYPQDQALFMN 238 (419)
T ss_dssp EEECSSHHH--HHHHHHHHHHGGGGT-CEEEEEEECCSSC------SCCHHHHHHHHHSCCSEEEE-CCCCHHHHHHHHH
T ss_pred EEEcCcchh--HHHHHHHHHHHHHcC-CeEEEEecCCCCC------ccHHHHHHHHHhcCCCEEEE-ccccCchHHHHHH
Confidence 999999999 999999999999999 9999988887765 56999999999999999999 755 678999999
Q ss_pred HHHHcCCCCCCeEEEeeCcccccccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCCCCCCc-hhh
Q 004136 251 EANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPS-IHA 329 (771)
Q Consensus 251 ~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~a 329 (771)
+++++|+.. .|+.++.+... . ......+..+|++.........+|..++|.++|+++|. ..+. .++
T Consensus 239 ~~~~~g~~~---~~~~~~~~~~~-~-~~~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~~a 305 (419)
T 3h5l_A 239 QFMTDPTNS---LVYLQYGASLA-A-FRDIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYG--------DLSSTASG 305 (419)
T ss_dssp HHTTSCCSC---EEEECSGGGSH-H-HHHHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHC--------TTSCHHHH
T ss_pred HHHHcCCCc---eEEecCCCCcH-H-HHHhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhC--------CCCCcchh
Confidence 999999943 57776665421 1 11222356788876655444445889999999999983 3343 589
Q ss_pred hhHhHHHHHHHHHHHhhccC-----CCChHHHHHHHHcCceeceeeeEEEeCCCCCC------------CCeEEEEEeeC
Q 004136 330 LRAHDSIKIITEAIGRLNYN-----ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLN------------ADTLRIVNVVG 392 (771)
Q Consensus 330 ~~~YDav~~~a~Al~~~~~~-----~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~------------~~~~~I~~~~~ 392 (771)
+.+|||++++++|++++++. +.+++.++++|++++|+|++|+++||++|+.. ...+.|+|+++
T Consensus 306 ~~~Yda~~~~~~a~~~a~~~~~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~~~~~~~i~q~q~ 385 (419)
T 3h5l_A 306 CQTYSALYAYSIAAALAGGPGAPYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGMPHIFSQIFD 385 (419)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSEECEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhcCCccCCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCccccCCceEEEeeC
Confidence 99999999999999988751 13678999999999999999999999998854 12456888888
Q ss_pred Cce
Q 004136 393 KKY 395 (771)
Q Consensus 393 ~~~ 395 (771)
|++
T Consensus 386 g~~ 388 (419)
T 3h5l_A 386 KAE 388 (419)
T ss_dssp TTS
T ss_pred Cce
Confidence 887
No 19
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=5.1e-38 Score=338.13 Aligned_cols=343 Identities=18% Similarity=0.245 Sum_probs=297.3
Q ss_pred CCcEEEEEEEeCCC---cCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchH
Q 004136 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (771)
Q Consensus 32 ~~~I~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~ 108 (771)
+.++|||+++|+|+ ..|.....|+++|++++|+ -.|++++++++|+++++..+.+.+++|+.+++|.+||||.+|.
T Consensus 14 ~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~-i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~~s~ 92 (366)
T 3td9_A 14 RKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT-VLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASA 92 (366)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE-ETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred cceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh-cCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccCCch
Confidence 46899999999995 4588999999999999998 5589999999999999999999999999766799999999999
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHH-HHcCCeEEEEEEE-eCCCCCCcchH
Q 004136 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYE-DNVYGGDSGKL 186 (771)
Q Consensus 109 ~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l-~~~~w~~v~ii~~-~~~~g~~~~~~ 186 (771)
.+.+++++++..++|+|++.++ ++.++. .+|++||+.|++..++.++++++ ++++|+++++|+. +++|+ ....
T Consensus 93 ~~~~~~~~~~~~~iP~i~~~~~--~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~--~~~~ 167 (366)
T 3td9_A 93 HSLAIAPIAEENKVPMVTPAST--NPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYS--VGLS 167 (366)
T ss_dssp HHHHHHHHHHHTTCCEEESSCC--CGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHH--HHHH
T ss_pred hHHHHHHHHHhCCCeEEecCCC--CccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHH--HHHH
Confidence 9999999999999999999988 777755 56999999999999999999999 5689999999987 56788 8888
Q ss_pred HHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEe
Q 004136 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (771)
Q Consensus 187 ~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (771)
+.+++.+++.| +++.... ++.+. .++...++++++.++++|++ .++...+..++++++++|+.. .|++
T Consensus 168 ~~~~~~~~~~G-~~v~~~~-~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~---~~~~ 235 (366)
T 3td9_A 168 NFFINKFTELG-GQVKRVF-FRSGD------QDFSAQLSVAMSFNPDAIYI-TGYYPEIALISRQARQLGFTG---YILA 235 (366)
T ss_dssp HHHHHHHHHTT-CEEEEEE-ECTTC------CCCHHHHHHHHHTCCSEEEE-CSCHHHHHHHHHHHHHTTCCS---EEEE
T ss_pred HHHHHHHHHCC-CEEEEEE-eCCCC------ccHHHHHHHHHhcCCCEEEE-ccchhHHHHHHHHHHHcCCCc---eEEe
Confidence 99999999999 9998877 76654 46888999999999999999 999999999999999999975 4777
Q ss_pred eCcccccccccChhhhhccccEEEEEeeccCC--ChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHH
Q 004136 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDD--SSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIG 344 (771)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~ 344 (771)
++.+... . ......+..+|++....+.+.. +|..++|.++|+++| +..|+.+++.+|||++++++|++
T Consensus 236 ~~~~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--------g~~p~~~~~~~yda~~~~~~al~ 305 (366)
T 3td9_A 236 GDGADAP-E-LIEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKY--------GKEPAALNALGYDAYMVLLDAIE 305 (366)
T ss_dssp CGGGCST-H-HHHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCcCCH-H-HHHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHH--------CCCCchhHHHHHHHHHHHHHHHH
Confidence 6654321 1 1122335678888877654432 478999999999988 44578899999999999999999
Q ss_pred hhccCCCChHHHHHHHHcCc-eeceeeeEEEeCCCCCCCCeEEEEEeeCCceEEEEEecCCC
Q 004136 345 RLNYNISSPEMLLRQMLSSD-FSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNF 405 (771)
Q Consensus 345 ~~~~~~~~~~~l~~~l~~~~-f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~~ 405 (771)
+++. .+++.+.++|++++ |+|++|+++|+++|++. ..+.|+++++|+|+.|+.|++..
T Consensus 306 ~ag~--~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~~ 364 (366)
T 3td9_A 306 RAGS--FDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVINPDD 364 (366)
T ss_dssp HHTS--CCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEECGGG
T ss_pred HhCC--CCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEecChhh
Confidence 9988 79999999999997 99999999999999987 56999999999999999998753
No 20
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=9.7e-38 Score=334.13 Aligned_cols=339 Identities=18% Similarity=0.233 Sum_probs=280.9
Q ss_pred CCCcEEEEEEEeCCC---cCchHHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 004136 31 IEEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME 105 (771)
Q Consensus 31 ~~~~I~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~--~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~ 105 (771)
++++||||+++|+|+ ..|....+|+++|+++||+.| .|++|+++++|++++|..+++.+++|+.++++.+++||.
T Consensus 4 ~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~~ 83 (353)
T 4gnr_A 4 EEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPA 83 (353)
T ss_dssp --CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCC
T ss_pred CCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEeccc
Confidence 368999999999995 458899999999999999998 589999999999999999999999999888999999999
Q ss_pred chHhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCC-eEEEEEEEeC-CCCCCc
Q 004136 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNW-RRVAAIYEDN-VYGGDS 183 (771)
Q Consensus 106 ~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w-~~v~ii~~~~-~~g~~~ 183 (771)
+|..+.+++++++.+++|+|++.++ ++.++. .++|+||+.|++..++.+++.++.+.++ ++++++++++ +|| .
T Consensus 84 ~s~~~~a~~~~~~~~~vp~i~~~~~--~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg--~ 158 (353)
T 4gnr_A 84 TSGATAAAVANATKAGVPLISPSAT--QDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYA--K 158 (353)
T ss_dssp SHHHHHHHHHHHHHTTCCEEESSCC--CTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHH--H
T ss_pred cCcccceehhhhhccCcceEeeccc--cccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHH--H
Confidence 9999999999999999999999998 788765 4589999999999999999999976554 4555555543 477 6
Q ss_pred chHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeE
Q 004136 184 GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (771)
Q Consensus 184 ~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~ 263 (771)
...+.+++ +.| ++++..+.++.+. +|++.++.++++.++|+|++ .+...++..++++++++|+..+
T Consensus 159 ~~~~~~~~---~~g-~~vv~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~--- 224 (353)
T 4gnr_A 159 GIAKSFRE---SYK-GEIVADETFVAGD------TDFQAALTKMKGKDFDAIVV-PGYYNEAGKIVNQARGMGIDKP--- 224 (353)
T ss_dssp HHHHHHHH---HCC-SEEEEEEEECTTC------CCCHHHHHHHHTSCCSEEEC-CSCHHHHHHHHHHHHHTTCCSC---
T ss_pred HHHHHHHH---HcC-CEEEEEEeeCCCC------CCHHHHHHHHHhcCCCEEEE-ecCcHHHHHHHHHHHHcCCCCc---
Confidence 65555543 457 8899988888776 67999999999999999999 9999999999999999999875
Q ss_pred EEeeCcccccccccChhhhhccccEEEEEeeccC--CChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHH
Q 004136 264 WIVTNTVANALDSLNTTVISSMEGTLGIKSYYSD--DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITE 341 (771)
Q Consensus 264 ~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~ 341 (771)
++.++.+.... .......+..++.+....+.+. .+|..++|.++|+++| +..|+.+++.+|||++++++
T Consensus 225 ~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--------g~~p~~~a~~~Yda~~~la~ 295 (353)
T 4gnr_A 225 IVGGDGFNGEE-FVQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKY--------NEEPSTFAALAYDSVHLVAN 295 (353)
T ss_dssp EEECGGGCSHH-HHHHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHH
T ss_pred EEEecccccch-hhhhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHh--------CCCCChhHHHHHHHHHHHHH
Confidence 55555443211 1111123466777766654332 2478899999999998 55688899999999999999
Q ss_pred HHHhhccCCCChHHHHHHHHcC-ceeceeeeEEEeCCCCCCCCeEEEEEeeCCceEEEEEec
Q 004136 342 AIGRLNYNISSPEMLLRQMLSS-DFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWL 402 (771)
Q Consensus 342 Al~~~~~~~~~~~~l~~~l~~~-~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~vg~w~ 402 (771)
|++++. +++.++++|+++ +|+|++|+++||++|++. ..+.|+++++|+|+.+....
T Consensus 296 Ai~~a~----~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~~~v~ 352 (353)
T 4gnr_A 296 AAKGAK----NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKVEAAEVVK 352 (353)
T ss_dssp HHTTCS----SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEEEEEEEEC
T ss_pred HHhcCC----CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEEEEEEEeC
Confidence 998753 689999999987 699999999999999987 67889999999998876543
No 21
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=2e-37 Score=334.71 Aligned_cols=335 Identities=14% Similarity=0.195 Sum_probs=291.6
Q ss_pred CCcEEEEEEEeCCCc---C-chHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCch
Q 004136 32 EEVTKIGAIVDANSQ---M-GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~---~-g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s 107 (771)
.++|+||+++|++++ . |.....|+++|++++|..-.|++++++++|+++++..+.+.+++|+.+++|.+||||.+|
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~s 81 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGKVNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGGTNS 81 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEECSCH
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHhCCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECCCCc
Confidence 368999999999943 3 788999999999999422268999999999999999999999999966999999999999
Q ss_pred HhHHHHHHhhccCCccEEeecCCCCCCCccC-CCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchH
Q 004136 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (771)
Q Consensus 108 ~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~-~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (771)
..+.+++++++..++|+|++.++ ++.++. ..+|++||+.|++..++.++++++.+++|+++++|+.+++|| ....
T Consensus 82 ~~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g--~~~~ 157 (375)
T 3i09_A 82 ATALSMNQVAAEKKKVYINIGAG--ADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFG--KALE 157 (375)
T ss_dssp HHHHHHHHHHHHHTCEEEECSCC--CGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHH
T ss_pred HHHHHHHHHHHHcCceEEEeCCC--chhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHH--HHHH
Confidence 99999999999999999999988 788877 578999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEe
Q 004136 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (771)
Q Consensus 187 ~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (771)
+.+++.+++.| ++++..+.++... .++..++.++++.++|+|++ .++..++..++++++++|+..+. .+++
T Consensus 158 ~~~~~~~~~~G-~~v~~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~~-~i~g 228 (375)
T 3i09_A 158 KNTADVVKANG-GKVLGEVRHPLSA------SDFSSFLLQAQSSKAQILGL-ANAGGDTVNAIKAAKEFGITKTM-KLAA 228 (375)
T ss_dssp HHHHHHHHHTT-CEEEEEEEECTTC------SCCHHHHHHHHHTCCSEEEE-ECCHHHHHHHHHHHHHTTGGGTC-EEEE
T ss_pred HHHHHHHHHcC-CEEeeeeeCCCCC------ccHHHHHHHHHhCCCCEEEE-ecCchhHHHHHHHHHHcCCCcCc-eEEe
Confidence 99999999999 9998888777655 46889999999999999999 99999999999999999998875 4444
Q ss_pred eCcccccccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHhh
Q 004136 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (771)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~ 346 (771)
.+.+....... ..+..+|++...++.+..+|..++|.++|+++| +..|+.+++.+|||++++++|++++
T Consensus 229 ~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--------g~~p~~~a~~~Yda~~~~~~Al~~a 297 (375)
T 3i09_A 229 LLMFINDVHAL---GLETTQGLVLTDSWYWNRDQASRQWAQRYFAKM--------KKMPSSLQAADYSSVTTYLKAVQAA 297 (375)
T ss_dssp SSCCHHHHHHH---CHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHhhh---ChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHH--------CCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 44333222111 124678888777665554588999999999998 4567889999999999999999999
Q ss_pred ccCCCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEeeCC
Q 004136 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGK 393 (771)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~ 393 (771)
++ .+++.|.++|++++|+|++|.++|+++|++. ..+.|++++++
T Consensus 298 g~--~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~ 341 (375)
T 3i09_A 298 GS--TDSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKP 341 (375)
T ss_dssp TS--CCHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCG
T ss_pred CC--CCHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEecc
Confidence 87 7999999999999999999999999999887 67889998764
No 22
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=6.6e-38 Score=335.95 Aligned_cols=344 Identities=15% Similarity=0.151 Sum_probs=296.2
Q ss_pred CcEEEEEEEeCCC---cCchHHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCch
Q 004136 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (771)
Q Consensus 33 ~~I~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~--~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s 107 (771)
.+|+||+++|+++ ..|.....|+++|++++|+++ +|++++++++|+++++..+.+.+++|+ +++|.+||||.++
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~-~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFV-ADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTCHHHHHHHHHHHH-HTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHH-HCCCcEEEcCCCc
Confidence 3699999999985 367899999999999999998 589999999999999999999999999 4999999999999
Q ss_pred HhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHH-HHcCCeEEEEEEEeCCCCCCcchH
Q 004136 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYGGDSGKL 186 (771)
Q Consensus 108 ~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l-~~~~w~~v~ii~~~~~~g~~~~~~ 186 (771)
..+.+++++++..++|+|++.++ ++.+++..+|++||+.|++..++.++++++ ++++|+++++|+.++++| ....
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~--~~~~ 155 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAAT--NPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYG--QGLA 155 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCC--CGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHH--HHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCC--CcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHH--HHHH
Confidence 99999999999999999999988 888888778999999999999999999977 557999999999998899 8899
Q ss_pred HHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEe
Q 004136 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (771)
Q Consensus 187 ~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (771)
+.+++.+++.| +++.....++... .++...++++++.++++|++ +++...+..++++++++|+.. .|++
T Consensus 156 ~~~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~---~~~~ 224 (356)
T 3ipc_A 156 DETKKAANAAG-VTEVMYEGVNVGD------KDFSALISKMKEAGVSIIYW-GGLHTEAGLIIRQAADQGLKA---KLVS 224 (356)
T ss_dssp HHHHHHHHHTT-CCCSEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHHTCCC---EEEE
T ss_pred HHHHHHHHHcC-CEEEEEEeeCCCC------CCHHHHHHHHHhcCCCEEEE-ccCchHHHHHHHHHHHCCCCC---cEEE
Confidence 99999999999 9988777776554 45888999999999999999 999999999999999999976 4776
Q ss_pred eCcccccccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHhh
Q 004136 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (771)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~ 346 (771)
++.+... .. ........+|++...++.+..+|..++|.++|+++ . ..|+.+++.+|||++++++|++++
T Consensus 225 ~~~~~~~-~~-~~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~--------~~p~~~~~~~yda~~~~~~al~~a 293 (356)
T 3ipc_A 225 GDGIVSN-EL-ASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G--------FNPEAYTLYSYAAMQAIAGAAKAA 293 (356)
T ss_dssp CGGGCSH-HH-HHHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T--------CCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred eccccCH-HH-HHHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C--------CCcchhHHHHHHHHHHHHHHHHHh
Confidence 6554321 11 11223567888777666544458899999999886 2 236678999999999999999999
Q ss_pred ccCCCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEeeC---CceEEEEEecCCC
Q 004136 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG---KKYKELDFWLPNF 405 (771)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~---~~~~~vg~w~~~~ 405 (771)
+. .+++.+.++|++.+|+|++|+++||++|++....+.|+++++ |+|+.+..|.+..
T Consensus 294 g~--~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~~ 353 (356)
T 3ipc_A 294 GS--VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHHH 353 (356)
T ss_dssp TC--CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC-----
T ss_pred CC--CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEecccccc
Confidence 87 799999999999999999999999999999878999999984 9999999997653
No 23
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=2.1e-37 Score=334.96 Aligned_cols=337 Identities=14% Similarity=0.169 Sum_probs=289.8
Q ss_pred CCCcEEEEEEEeCCCc---C-chHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCc
Q 004136 31 IEEVTKIGAIVDANSQ---M-GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (771)
Q Consensus 31 ~~~~I~IG~i~p~s~~---~-g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 106 (771)
+.++|+||+++|++++ . |.....|+++|++++|..-.|++++++++|+++++..+.+.+++|+.+++|.+||||.+
T Consensus 3 ~~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~ 82 (379)
T 3n0w_A 3 STGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKALGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDVVN 82 (379)
T ss_dssp ---CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTEETTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCcEEEEEEeCCccccccccCHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcCCC
Confidence 3578999999999843 4 78899999999999943226899999999999999999999999996699999999999
Q ss_pred hHhHHHHHHhhccCCccEEeecCCCCCCCccC-CCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcch
Q 004136 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (771)
Q Consensus 107 s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~-~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (771)
|..+.+++++++..++|+|++.++ ++.++. ..+||+||+.|++..++.++++++.+++|+++++|+.+++|| ...
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g--~~~ 158 (379)
T 3n0w_A 83 SGTALAINNLVKDKKKLAFITAAA--ADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYG--DLM 158 (379)
T ss_dssp HHHHHHHHHHHHHHTCEEEECSCC--CTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHH
T ss_pred cHHHHHHHHHHHHcCceEEEcCCC--chhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchh--HHH
Confidence 999999999999999999999888 788877 568999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEE
Q 004136 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (771)
Q Consensus 186 ~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (771)
.+.+++.+++.| ++++....++... .|+..++.++++.++|+|++ .++..++..++++++++|+..+.+ ++
T Consensus 159 ~~~~~~~~~~~G-~~v~~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~ 229 (379)
T 3n0w_A 159 NAAIRRELTAGG-GQIVGSVRFPFET------QDFSSYLLQAKASGAQLIVS-TSGGAANINIMKQAREFGLPSKTQ-KV 229 (379)
T ss_dssp HHHHHHHHHHHT-CEEEEEEEECTTC------CCCHHHHHHHHHHTCSEEEE-CCCHHHHHHHHHHHHHTTCSCSSC-EE
T ss_pred HHHHHHHHHHcC-CEEEEEEeCCCCC------CCHHHHHHHHHHCCCCEEEE-ecccchHHHHHHHHHHcCCCCCCc-EE
Confidence 999999999999 9999888887655 46888999999999999999 999999999999999999988643 44
Q ss_pred eeCccc-ccccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHH
Q 004136 266 VTNTVA-NALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIG 344 (771)
Q Consensus 266 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~ 344 (771)
.+..+. ...... ..+..+|++...++.+..+|..++|.++|+++| +..|+.+++.+|||++++++|++
T Consensus 230 ~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--------g~~p~~~~~~~Yda~~~~~~Al~ 298 (379)
T 3n0w_A 230 GGMIDILTDVKSA---GLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKM--------GKMPTNNQAGGYSAALQYLKAVN 298 (379)
T ss_dssp ECCBCCHHHHHHH---CHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHH
T ss_pred EecccchHHHHhh---CHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHH--------CCCCChHHHHHHHHHHHHHHHHH
Confidence 443322 211111 125678888777665554588999999999998 44678899999999999999999
Q ss_pred hhccCCCChHHHHHHHHcCceeceeee-EEEeCCCCCCCCeEEEEEeeCCc
Q 004136 345 RLNYNISSPEMLLRQMLSSDFSGLSGK-IRFKDGELLNADTLRIVNVVGKK 394 (771)
Q Consensus 345 ~~~~~~~~~~~l~~~l~~~~f~G~tG~-v~Fd~~g~~~~~~~~I~~~~~~~ 394 (771)
++++ .+++.|.++|++++|+|..|. ++|+++|++. ..+.|+++++++
T Consensus 299 ~ag~--~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~~~~ 346 (379)
T 3n0w_A 299 AIGS--KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAKKPE 346 (379)
T ss_dssp HHTC--CCHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEECCGG
T ss_pred HhCC--CCHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEEchh
Confidence 9987 799999999999999999885 9999999876 789999997643
No 24
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=5.7e-37 Score=328.92 Aligned_cols=345 Identities=14% Similarity=0.178 Sum_probs=296.3
Q ss_pred CCcEEEEEEEeCCC---cCchHHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCc
Q 004136 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (771)
Q Consensus 32 ~~~I~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~--~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 106 (771)
.++|+||+++|+++ ..|.....|+++|++++|+++ .|+++++++.|+++++..+.+.+++|+.+++|.+||||.+
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 81 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFS 81 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 36899999999984 357899999999999999998 5899999999999999999999999998899999999999
Q ss_pred hHhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchH
Q 004136 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (771)
Q Consensus 107 s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (771)
+..+.++++.+...++|+|++.++ ++.++... |++||+.|++..++.++++++.+.+|++|++|+.++.+| ....
T Consensus 82 s~~~~~~~~~~~~~~iP~v~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~ 156 (358)
T 3hut_A 82 STVSMAAGSIYGKEGMPQLSPTAA--HPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWG--LSSA 156 (358)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSCC--CGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHH
T ss_pred cHHHHHHHHHHHHCCCcEEecCCC--CcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHH--HHHH
Confidence 999999999999999999999888 77777655 999999999999999999999888999999999988899 8899
Q ss_pred HHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEe
Q 004136 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (771)
Q Consensus 187 ~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (771)
+.+++.+++.| +++.....++... .++...++++++.++++|++ .++...+..++++++++|+..+ |++
T Consensus 157 ~~~~~~l~~~g-~~v~~~~~~~~~~------~~~~~~~~~l~~~~~d~i~~-~~~~~~a~~~~~~~~~~g~~~p---~~~ 225 (358)
T 3hut_A 157 QAFRKAFELRG-GAVVVNEEVPPGN------RRFDDVIDEIEDEAPQAIYL-AMAYEDAAPFLRALRARGSALP---VYG 225 (358)
T ss_dssp HHHHHHHHHTT-CEEEEEEEECTTC------CCCHHHHHHHHHHCCSEEEE-ESCHHHHHHHHHHHHHTTCCCC---EEE
T ss_pred HHHHHHHHHcC-CEEEEEEecCCCC------ccHHHHHHHHHhcCCCEEEE-ccCchHHHHHHHHHHHcCCCCc---EEe
Confidence 99999999999 9998877776554 45788899999889999999 9999999999999999999764 777
Q ss_pred eCcccccccccChhhhhccccEEEEEeeccC-CChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHh
Q 004136 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (771)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~ 345 (771)
.+.+... . ......+..+|++...++.+. .+|..++|.++|+++| +..|+.+++.+|||++++++|+++
T Consensus 226 ~~~~~~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~p~~~~~~~yda~~~~~~al~~ 295 (358)
T 3hut_A 226 SSALYSP-K-FIDLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLY--------GAIPTLFAAHGYDAVGIMLAAVGR 295 (358)
T ss_dssp CGGGCSH-H-HHHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccCH-H-HHHHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHH--------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6654321 1 111223567888887766543 3588999999999988 446788999999999999999999
Q ss_pred hccCCCChHH-HHHHHHcC-ceeceeeeEEEeCCCCCCCCeEEEEEeeCCceEEEEEecCC
Q 004136 346 LNYNISSPEM-LLRQMLSS-DFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPN 404 (771)
Q Consensus 346 ~~~~~~~~~~-l~~~l~~~-~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~ 404 (771)
+++ .+++. +.++|+++ +|+|++|+++|+++|++....+.|+++++|+|+.+..+.++
T Consensus 296 ag~--~~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~~ 354 (358)
T 3hut_A 296 AGP--EVTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGHH 354 (358)
T ss_dssp HCT--TCCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC------
T ss_pred hCC--CChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEecccccc
Confidence 987 68888 99999999 99999999999999998558899999999999998777654
No 25
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=7.2e-37 Score=330.40 Aligned_cols=346 Identities=13% Similarity=0.179 Sum_probs=299.0
Q ss_pred CCcEEEEEEEeCCC---cCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchH
Q 004136 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (771)
Q Consensus 32 ~~~I~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~ 108 (771)
.++|+||+++|+++ ..|.....|+++|++++|..-+|+++++++.|+++++..+.+.+++|+.+++|.+||||.++.
T Consensus 14 ~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~ 93 (375)
T 4evq_A 14 AGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGTVHSG 93 (375)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEECSSHH
T ss_pred CCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcCCccH
Confidence 47899999999984 467889999999999999222789999999999999999999999999656999999999999
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCccC-CCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHH
Q 004136 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (771)
Q Consensus 109 ~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~-~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (771)
.+.+++++++..++|+|++.++ ++.+.+ ..+|++||+.|++..++.++++++.++||++|++|+.++.+| ....+
T Consensus 94 ~~~~~~~~~~~~~iP~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~~ 169 (375)
T 4evq_A 94 VAMAMVKIAREDGIPTIVPNAG--ADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAG--EEMVS 169 (375)
T ss_dssp HHHHHHHHHHHHCCCEEESSCC--CGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHH
T ss_pred HHHHHHHHHHHcCceEEecCCC--ChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHH--HHHHH
Confidence 9999999999999999999988 788876 458999999999999999999999999999999999998898 88899
Q ss_pred HHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEee
Q 004136 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (771)
Q Consensus 188 ~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (771)
.+++.+++.| +++.....++... .++...++++++.++++|++ .++...+..++++++++|+..+ |+++
T Consensus 170 ~~~~~l~~~G-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~dai~~-~~~~~~a~~~~~~~~~~g~~vp---~~~~ 238 (375)
T 4evq_A 170 GFKKSFTAGK-GEVVKDITIAFPD------VEFQSALAEIASLKPDCVYA-FFSGGGALKFIKDYAAANLGIP---LWGP 238 (375)
T ss_dssp HHHHHHHHTT-CEEEEEEEECTTC------CCCHHHHHHHHHHCCSEEEE-ECCTHHHHHHHHHHHHTTCCCC---EEEE
T ss_pred HHHHHHHHcC-CeEEEEEecCCCC------ccHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCce---EEec
Confidence 9999999999 9998777776554 45788899999889999999 8999999999999999999754 5555
Q ss_pred CcccccccccChhhhhccccEEEEEeeccC-CChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHhh
Q 004136 268 NTVANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (771)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~ 346 (771)
+ +. ..... .......+|++...++.+. .+|..++|.++|+++| +..|+.+++.+|||++++++|++++
T Consensus 239 ~-~~-~~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~p~~~~~~~yda~~~~~~al~~~ 307 (375)
T 4evq_A 239 G-FL-TDGVE-AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAY--------KIPPDVFAVQGWDAGQLLDAGVKAV 307 (375)
T ss_dssp G-GG-TTTTH-HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred C-cC-CHHHH-HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHH--------CCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 3 32 11111 2233567888887765443 2488999999999988 4467889999999999999999999
Q ss_pred ccCCCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEeeCCceEEEEEecCC
Q 004136 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPN 404 (771)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~ 404 (771)
+..+.+++.|.++|++++|+|++|+++|+++|++. ..+.|+++++++|+.|+.+.++
T Consensus 308 g~~~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~ 364 (375)
T 4evq_A 308 GGDVAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSVNLGLAAPA 364 (375)
T ss_dssp TTCTTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEEEEEEEECS
T ss_pred CCCCCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcEEeeehhhc
Confidence 86557999999999999999999999999999986 6899999999999999998664
No 26
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=6.3e-37 Score=326.99 Aligned_cols=338 Identities=14% Similarity=0.180 Sum_probs=289.1
Q ss_pred CcEEEEEEEeCCCc---CchHHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCch
Q 004136 33 EVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (771)
Q Consensus 33 ~~I~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~~~--~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s 107 (771)
++|+||+++|++++ .|.....|+++|+++||++| .|+++++++.|+++++..+.+.+++|+ +++|.+||||.++
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~-~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIV-NDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHH-HTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHHHHHHHHH-hCCCCEEEcCCCc
Confidence 36999999999854 57789999999999999998 589999999999999999999999999 6899999999999
Q ss_pred HhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHH-HHcCCeEEEEEEEeCCCCCCcchH
Q 004136 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYGGDSGKL 186 (771)
Q Consensus 108 ~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l-~~~~w~~v~ii~~~~~~g~~~~~~ 186 (771)
..+.++.++++..++|+|++.++ ++.+++..+|++||+.|++..++.++++++ ++++|+++++|+.++.++ ....
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~--~~~~ 155 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGAT--NPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYG--EGLA 155 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCC--CGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHH--HHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCC--ChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchH--HHHH
Confidence 88889999999999999999887 777776558999999999999999999998 457999999999988888 8889
Q ss_pred HHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEe
Q 004136 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (771)
Q Consensus 187 ~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (771)
+.+++.+++.| +++.....++... .++...++++++.++++|++ .++...+..++++++++|+..+ |++
T Consensus 156 ~~~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~i~~-~~~~~~a~~~~~~~~~~g~~~~---~~~ 224 (346)
T 1usg_A 156 RSVQDGLKAAN-ANVVFFDGITAGE------KDFSALIARLKKENIDFVYY-GGYYPEMGQMLRQARSVGLKTQ---FMG 224 (346)
T ss_dssp HHHHHHHHHTT-CCEEEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCCE---EEE
T ss_pred HHHHHHHHHcC-CEEEEEeccCCCC------cCHHHHHHHHHhcCCCEEEE-cCcchHHHHHHHHHHHcCCCCe---EEe
Confidence 99999999999 9988766665443 34677888998889999999 8888889999999999999764 777
Q ss_pred eCcccccccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHhh
Q 004136 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (771)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~ 346 (771)
++.+... ... ....+..+|++...++....+|..++|.++|+++| +..++.+++.+|||++++++|++++
T Consensus 225 ~~~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~~~~~~~~~yda~~~~~~al~~~ 294 (346)
T 1usg_A 225 PEGVGNA-SLS-NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK--------KDPSGPYVWITYAAVQSLATALERT 294 (346)
T ss_dssp CGGGCCT-THH-HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTT--------CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcH-HHH-HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHh--------CCCCchhHHHHHHHHHHHHHHHHHh
Confidence 7665321 111 11234678888776654334478999999998877 3357789999999999999999999
Q ss_pred ccCCCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEee-CCceEEE
Q 004136 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKEL 398 (771)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~-~~~~~~v 398 (771)
++ .+++.|.++|++.+|+|++|+++|+++|++....|.|++++ +|+|+.+
T Consensus 295 g~--~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 295 GS--DEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp CC--CCHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred CC--CCHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 87 79999999999999999999999999999877789999999 8988765
No 27
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=2.9e-36 Score=324.79 Aligned_cols=345 Identities=22% Similarity=0.296 Sum_probs=294.9
Q ss_pred CCcEEEEEEEeCCCc---CchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchH
Q 004136 32 EEVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~ 108 (771)
.++|+||+++|+++. .|.....|+++|++++|..-+|++|++++.|+++++..+.+.+++|+.+++|.+||||.+|.
T Consensus 4 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~~s~ 83 (368)
T 4eyg_A 4 EDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFGITP 83 (368)
T ss_dssp CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred CCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCCccH
Confidence 478999999999853 57889999999999998533689999999999999999999999999769999999999999
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHH
Q 004136 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (771)
Q Consensus 109 ~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (771)
.+.+++++++..++|+|++.++ ++.+++. +|++||+.|++..++.++++++.+++|+++++|+.++.+| ....+.
T Consensus 84 ~~~~~~~~~~~~~ip~i~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g--~~~~~~ 158 (368)
T 4eyg_A 84 AALAAAPLATQAKVPEIVMAAG--TSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPG--NDALAF 158 (368)
T ss_dssp HHHHHHHHHHHHTCCEEESSCC--CGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHH
T ss_pred HHHHHHHHHHhCCceEEeccCC--ChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHh--HHHHHH
Confidence 9999999999999999999988 7777665 7999999999999999999999999999999999988898 888999
Q ss_pred HHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeC
Q 004136 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (771)
Q Consensus 189 l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (771)
+++.+++.| +++.....++... .++...++++++.++++|++ .+....+..++++++++|+.++.+.|++++
T Consensus 159 ~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 159 FKERFTAGG-GEIVEEIKVPLAN------PDFAPFLQRMKDAKPDAMFV-FVPAGQGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp HHHHHHHTT-CEEEEEEEECSSS------CCCHHHHHHHHHHCCSEEEE-ECCTTCHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred HHHHHHHcC-CEEEEEEeCCCCC------CcHHHHHHHHHhcCCCEEEE-eccchHHHHHHHHHHHcCCCcCCceEEecC
Confidence 999999999 9998888777655 45888999999999999999 888889999999999999987667788876
Q ss_pred cccc--cccccChhhhhccccEEEEEeeccC-CChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHh
Q 004136 269 TVAN--ALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (771)
Q Consensus 269 ~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~ 345 (771)
.+.. ..... ....+|++...++.+. .+|..++|.++| ++|.. ..|+.+++.+|||++++++|+++
T Consensus 231 ~~~~~~~~~~~----g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~-------~~p~~~~~~~yda~~~~~~al~~ 298 (368)
T 4eyg_A 231 DVMDDDLLNSM----GDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG-------QRPGFMAVGGYDGIHLVFEALKK 298 (368)
T ss_dssp TTTCHHHHTTC----CGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS-------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHhh----hhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC-------CCCChHHHHHHHHHHHHHHHHHH
Confidence 4322 12211 2456888877665432 348899999999 77732 24778999999999999999999
Q ss_pred hccCCCChHHHHHHHHcCceeceeeeEEEe-CCCCCCCCeEEEEEee--CCceEEE--EEecC
Q 004136 346 LNYNISSPEMLLRQMLSSDFSGLSGKIRFK-DGELLNADTLRIVNVV--GKKYKEL--DFWLP 403 (771)
Q Consensus 346 ~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd-~~g~~~~~~~~I~~~~--~~~~~~v--g~w~~ 403 (771)
++.. .+++.|.++|++++|+|++|+++|| ++|+.. ..+.|.+++ +|+|+.+ +.|.+
T Consensus 299 ~g~~-~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~-~~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 299 TGGK-ADGDSLIAAMKGMKWESPRGPISIDPETRDIV-QNIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp TTTC-CSHHHHHHHHTTCEEEETTEEEEECTTTCCEE-EEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hCCC-CCHHHHHHHHHcCCcccCCCCeEECcccCCcc-cceEEEEEEecCCeEEEEEeecccc
Confidence 9842 7999999999999999999999999 666654 788899998 8888665 55544
No 28
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=9e-37 Score=331.63 Aligned_cols=351 Identities=14% Similarity=0.149 Sum_probs=295.9
Q ss_pred CCcEEEEEEEeCCC---cCchHHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCc
Q 004136 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (771)
Q Consensus 32 ~~~I~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~--~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 106 (771)
.++|+||+++|+++ ..|.....|+++|++++|+++ .|++++++++|+++++..+.+.+++|+.+++|.+||| .+
T Consensus 5 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig-~~ 83 (392)
T 3lkb_A 5 QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS-YA 83 (392)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-CC
T ss_pred CCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-CC
Confidence 47899999999995 357889999999999999987 4899999999999999999999999996669999999 68
Q ss_pred hHhHHHHHHhhccCCccEEeecCCCCCCCccC-CCCceEEEeecCcHHHHHHHHHHHHH-cCCeEEEEEEEeCCCCCCcc
Q 004136 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYEDNVYGGDSG 184 (771)
Q Consensus 107 s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~-~~~p~~fr~~p~~~~~~~a~~~~l~~-~~w~~v~ii~~~~~~g~~~~ 184 (771)
|..+.+++++++..++|+|++.++ +.+.+ ..+|++||+.|++..++.++++++.+ ++|++|++|+.+++|| ..
T Consensus 84 s~~~~~~~~~~~~~~iP~i~~~~~---~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g--~~ 158 (392)
T 3lkb_A 84 TGANLQLKPLIQELRIPTIPASMH---IELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFG--RA 158 (392)
T ss_dssp HHHHHHHHHHHHHHTCCEEESCCC---GGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHH--HT
T ss_pred cHHHHHHHHHHHhCCceEEecccC---hhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchh--hh
Confidence 888999999999999999998766 44544 57899999999999999999999976 6999999999998899 89
Q ss_pred hHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEE
Q 004136 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (771)
Q Consensus 185 ~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (771)
..+.+++.+++.| ++++....++... .++..++.++++.++++|++ .++...+..++++++++|+.. .|
T Consensus 159 ~~~~~~~~l~~~G-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~dav~~-~~~~~~a~~~~~~~~~~g~~~---~~ 227 (392)
T 3lkb_A 159 PVEDARKAARELG-LQIVDVQEVGSGN------LDNTALLKRFEQAGVEYVVH-QNVAGPVANILKDAKRLGLKM---RH 227 (392)
T ss_dssp THHHHHHHHHHHT-CEEEEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCC---EE
T ss_pred HHHHHHHHHHHcC-CeEEEEEeeCCCC------cCHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCc---eE
Confidence 9999999999999 9998888777654 46888999999999999999 999999999999999999976 46
Q ss_pred EeeCcccccccccChhhhhccccEEEEEeecc-CCChhHHHHHHHHHHhcccCCCCCCCCCCch----hhhhHhHHHHHH
Q 004136 265 IVTNTVANALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSI----HALRAHDSIKII 339 (771)
Q Consensus 265 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~----~a~~~YDav~~~ 339 (771)
+.++.+.. .... .......+|++...++.. ..++..++|.++|+++|. ..|+. +++.+|||++++
T Consensus 228 ~~~~~~~~-~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~p~~~~~~~~~~~yda~~~~ 297 (392)
T 3lkb_A 228 LGAHYTGG-PDLI-ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYG--------RPENFIESVNYTNGMLAAAIA 297 (392)
T ss_dssp EECGGGCS-HHHH-HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTT--------CCHHHHTCHHHHHHHHHHHHH
T ss_pred EEecCccc-HHHH-HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhC--------CCcccccchhHHHHHHHHHHH
Confidence 66644321 1111 122356788888776533 223568899999999883 33433 378999999999
Q ss_pred HHHHHhhcc--CCCChHHHHHHHHcCc----ee-------ceeeeEEEeCCCCCCCCeEEEEEeeCCceEEEEEecCCCC
Q 004136 340 TEAIGRLNY--NISSPEMLLRQMLSSD----FS-------GLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFG 406 (771)
Q Consensus 340 a~Al~~~~~--~~~~~~~l~~~l~~~~----f~-------G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~vg~w~~~~~ 406 (771)
++|+++++. .+.+++.|+++|++++ |+ |++|+++|+++|++....+.|+++++|+|+.|+.|....+
T Consensus 298 ~~al~~ag~~~~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~~~v~~w~~~~~ 377 (392)
T 3lkb_A 298 VEAIRRAQERFKRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVTEPFTSAL 377 (392)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEEEECSCCBCCHH
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEeCCEEEEeccccchhH
Confidence 999999875 1369999999999997 98 9999999999888766789999999999999999987765
Q ss_pred Ccc
Q 004136 407 FSK 409 (771)
Q Consensus 407 ~~~ 409 (771)
+..
T Consensus 378 ~~~ 380 (392)
T 3lkb_A 378 FRK 380 (392)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 29
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=1.4e-36 Score=324.26 Aligned_cols=321 Identities=18% Similarity=0.251 Sum_probs=246.4
Q ss_pred CCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEE-EecCCCCHHHHHHHHHHHHhcCCeEEEEc-CCchHh
Q 004136 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQ-IRDHNRDPFQAATAAQELINKEKVKVIAG-METWEE 109 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~-~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~s~~ 109 (771)
+..+.||++|..+.. +.+++-|+++.|.-.+..++..+ .....+||..+...+|+++...+|.|||| |.++..
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~~~ 76 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQE 76 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC---------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESSCCT
T ss_pred CCceEEEEEEcccch-----hhhhccccCccccccCCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCCCch
Confidence 356999999977642 88999999999976555666654 44467899999999999997778988875 444444
Q ss_pred HHH--HHHhhccCCccEEeecCCCCCC-CccC-CCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcch
Q 004136 110 TAV--VAEIASRVQVPILSFAAPAVTP-LSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (771)
Q Consensus 110 ~~~--v~~~~~~~~iP~Is~~a~~~~~-~l~~-~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (771)
+.+ ++.+++.+++|+|+++++ +| .+++ ..+|++||+.|++..++.++++++++|+|++|++||+|+ .|
T Consensus 77 a~a~~v~~i~~~~~iP~IS~~at--~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~-~g----- 148 (364)
T 3qel_B 77 AIAQILDFISAQTLTPILGIHGG--SSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF-PG----- 148 (364)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEGG--GGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC-TT-----
T ss_pred HHHHHHHHHHhccCCCEEEeecC--CCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC-cc-----
Confidence 555 899999999999999999 78 8888 579999999999999999999999999999999999985 55
Q ss_pred HHHHHHHHhcc--CC-eEEEEeeecCCCCCCCCchHHHHHHH-HHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCC
Q 004136 186 LALLAEALQNV--SS-SEIQSRLVLPPISSISDPKEAVRGEL-KKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (771)
Q Consensus 186 ~~~l~~~~~~~--g~-~~i~~~~~~~~~~~~~d~~~~~~~~l-~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~ 261 (771)
.+.|.+.+++. |. +|+.....++..... .++...+ +++++.++++|++ +|+.+++..++++|.++||++++
T Consensus 149 ~~~~~~~l~~~~~~~~ici~~~~~i~~~~~~----~~~~~~l~~~i~~~~a~ViIv-~~~~~~~~~ll~~a~~~g~~~~~ 223 (364)
T 3qel_B 149 YQDFVNKIRSTIENSFVGWELEEVLLLDMSL----DDGDSKIQNQLKKLQSPIILL-YCTKEEATYIFEVANSVGLTGYG 223 (364)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEEEEEEECTTS----CSSSCHHHHHHTTCCCSEEEE-ESCHHHHHHHHHHHHTTTCSSTT
T ss_pred HHHHHHHHHHHhhccccceEEEEEEccCCCc----ccHHHHHHHHHHccCCcEEEE-EcCHHHHHHHHHHHHHcCCCCCC
Confidence 45555555544 40 366655444332211 2466677 6888899999999 99999999999999999999999
Q ss_pred eEEEeeCcccccccccChhhhhccccEEEEEeeccCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHH
Q 004136 262 SVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITE 341 (771)
Q Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~ 341 (771)
|+||+++.+....+... .....|++++.+.. |+ ....+++||||+++|+
T Consensus 224 y~wI~t~~~~~~~~~~~---~~~~~g~~~~~~~~-------------W~---------------~~~~~~~yDaV~~~A~ 272 (364)
T 3qel_B 224 YTWIVPSLVAGDTDTVP---SEFPTGLISVSYDE-------------WD---------------YGLPARVRDGIAIITT 272 (364)
T ss_dssp CEEEECHHHHCSTTCCC---TTSCTTCEECCBCT-------------TT---------------SCHHHHHHHHHHHHHH
T ss_pred eEEEEecccccCccccc---ccCCCceEEEeecc-------------ch---------------hhHHHHHHHHHHHHHH
Confidence 99999988654443222 13457777766532 10 1245789999999999
Q ss_pred HHHhhccC------------------CCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEee-CCceEEEEEec
Q 004136 342 AIGRLNYN------------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKELDFWL 402 (771)
Q Consensus 342 Al~~~~~~------------------~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~-~~~~~~vg~w~ 402 (771)
|++++..+ |.+|..|.++|++++|+|+ ++.||++|+|.++.|+|++++ +.++++||.|+
T Consensus 273 A~~~~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~W~ 350 (364)
T 3qel_B 273 AASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGKWK 350 (364)
T ss_dssp HHHHHHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEEEC
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEEEEEC
Confidence 99865431 2467789999999999998 999999999999999999998 68999999998
Q ss_pred C
Q 004136 403 P 403 (771)
Q Consensus 403 ~ 403 (771)
.
T Consensus 351 ~ 351 (364)
T 3qel_B 351 D 351 (364)
T ss_dssp S
T ss_pred C
Confidence 4
No 30
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=5e-36 Score=323.34 Aligned_cols=331 Identities=15% Similarity=0.184 Sum_probs=271.6
Q ss_pred CCcEEEEEEEeCCCc---CchHHHHHHHHHHHHHhc-CC--CCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 004136 32 EEVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNS-DS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME 105 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~-~~--~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~ 105 (771)
.++|+||+++|+|++ .|.....|+++|++++|+ .+ +|++|+++++|++++|..++..+++|+.+++|.+||||.
T Consensus 2 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 2 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 368999999999953 578999999999999998 45 689999999999999999999999999778999999999
Q ss_pred chHhHHHHHHhhccCCccEEeecCCCCCCCccC-CCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcc
Q 004136 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSG 184 (771)
Q Consensus 106 ~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~-~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~ 184 (771)
+|..+.+++++++..++|+|++.++ ++.++. ..+||+||+.|++..++.+++.++++++| ++++|+.+++|| ..
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g--~~ 156 (374)
T 3n0x_A 82 SSAAALADLPVAEENKKILIVEPAV--ADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFG--RD 156 (374)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCC--CGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHH--HH
T ss_pred CcHHHHHHHHHHHHcCccEEEcCCC--chhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHH--HH
Confidence 9999999999999999999998888 788877 45899999999999999999987888887 899999999999 99
Q ss_pred hHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCC-----ceEEEEEecChhHHHHHHHHHHHcCCCC
Q 004136 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ-----SRVFIVLQASLDMTIHLFTEANRMGLVG 259 (771)
Q Consensus 185 ~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~-----~~vIv~~~~~~~~~~~il~~a~~~g~~~ 259 (771)
..+.+++.+++.| ++|+..+.++.+. +|++.+++++++.+ +|+|++ .+.+... .+.++.+.++..
T Consensus 157 ~~~~~~~~~~~~G-~~vv~~~~~~~~~------~d~~~~l~~i~~~~~~~~~~d~v~~-~~~g~~~--~~~~~~~~~~~~ 226 (374)
T 3n0x_A 157 GVAAFKEALAKTG-ATLATEEYVPTTT------TDFTAVGQRLFDALKDKPGKKIIWV-IWAGGGD--PLTKLQDMDPKR 226 (374)
T ss_dssp HHHHHHHHHTTTT-CEEEEEEEECTTC------CCCHHHHHHHHHHHTTCSSEEEEEE-CCCSSSC--HHHHHHHTCGGG
T ss_pred HHHHHHHHHHHcC-CEEeeeecCCCCC------ccHHHHHHHHHhcCCCCCCCCEEEE-EecCCcH--HHHHHHHcchhh
Confidence 9999999999999 9999988887765 56899999999988 999998 6433221 234555555544
Q ss_pred CCeEEEeeCcccccccccChhhhhccccEEEEEeeccC--CChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHH
Q 004136 260 KDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSD--DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIK 337 (771)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~ 337 (771)
.++.++..+...... .......|+.+...+.+. .+|..++|.++|+++| +..|+.+++.+|||++
T Consensus 227 ~g~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~--------g~~p~~~a~~~Yda~~ 293 (374)
T 3n0x_A 227 YGIELSTGGNILPAL-----AAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRF--------NAPPDFFTAGGFSAAM 293 (374)
T ss_dssp GTEEEEECCCCTTGG-----GGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHH--------SSCCCHHHHHHHHHHH
T ss_pred cCCeeeeccccchhh-----hhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHH--------CCCCChhHHHHHHHHH
Confidence 444444433221111 111344566665543221 2478999999999988 4467889999999999
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEeeC
Q 004136 338 IITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG 392 (771)
Q Consensus 338 ~~a~Al~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~ 392 (771)
++++|++++++ .+++.|.++|++++|+|++|+++|++++++....+.|++++.
T Consensus 294 ~l~~Al~~ag~--~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~ 346 (374)
T 3n0x_A 294 AVVTAVQKAKS--TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKV 346 (374)
T ss_dssp HHHHHHHHHTS--CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEEC
T ss_pred HHHHHHHHhCC--CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEe
Confidence 99999999988 899999999999999999999999965444557899999874
No 31
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=8.7e-36 Score=323.58 Aligned_cols=342 Identities=14% Similarity=0.152 Sum_probs=290.9
Q ss_pred CcEEEEEEEeCCC---cCchHHHHHHHHHHHHHhcCC----CCc--EEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc
Q 004136 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS----RNH--KLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG 103 (771)
Q Consensus 33 ~~I~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~----~g~--~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG 103 (771)
++|+||+++|+++ ..|.....|+++|+++||++| +|+ +|+++++|+++++..+.+.+++|+.+++|.+|||
T Consensus 3 ~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG 82 (391)
T 3eaf_A 3 LTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIG 82 (391)
T ss_dssp EEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEE
Confidence 6899999999995 357889999999999999987 577 9999999999999999999999997889999999
Q ss_pred CCchHhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHH-cCCeEEEEEEE-eCCCCC
Q 004136 104 METWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYE-DNVYGG 181 (771)
Q Consensus 104 p~~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~-~~w~~v~ii~~-~~~~g~ 181 (771)
.+|..+.+++++++..++|+|++.++ ++ +. .+|++||+.|++..++.++++++.+ ++|++|++|+. +++||
T Consensus 83 -~~s~~~~a~~~~~~~~~iP~i~~~~~--~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g- 155 (391)
T 3eaf_A 83 -WGTADTEKLSDQVDTDKITYISASYS--AK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYS- 155 (391)
T ss_dssp -CCHHHHHHHHHHHHHHTCEEEESCCC--GG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHH-
T ss_pred -cCcHHHHHHHHHHhhcCCeEEecccc--hh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhH-
Confidence 68888999999999999999998766 33 44 6799999999999999999999977 69999999999 88899
Q ss_pred CcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHH--hhhCCceEEEEEecChhHHHHHHHHHHHcCCCC
Q 004136 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKK--VQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (771)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~--l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~ 259 (771)
....+.+++.+++.| ++++....++... .++..++.+ +++.++++|++ .++...+..++++++++|+..
T Consensus 156 -~~~~~~~~~~l~~~G-~~v~~~~~~~~~~------~d~~~~~~~~~l~~~~~dav~~-~~~~~~~~~~~~~~~~~g~~~ 226 (391)
T 3eaf_A 156 -RSPIGAIKKAAPSLG-LQVVGDYDLPLRA------TEADAERIAREMLAADPDYVWC-GNTISSCSLLGRAMAKVGLDA 226 (391)
T ss_dssp -HTTHHHHHHHTGGGT-EEEEEEEECCTTC------CHHHHHHHHHHHHTTCCSEEEE-CSCHHHHHHHHHHHHHHTCCC
T ss_pred -HHHHHHHHHHHHHcC-CceeeeeccCCCC------cCHHHHHHHHHHHHcCCCEEEE-ecCcHHHHHHHHHHHHCCCCc
Confidence 999999999999999 9999888887655 679999999 99999999999 999999999999999999976
Q ss_pred CCeEEEeeCcccccccccChhhhhcccc-EEEEEeec--c--CCChhHHHHHHHHHHhcccCCCCCCCCCC--chhhhhH
Q 004136 260 KDSVWIVTNTVANALDSLNTTVISSMEG-TLGIKSYY--S--DDSSPYKEFSALFRRNFTSEYPEEDHFHP--SIHALRA 332 (771)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~a~~~ 332 (771)
+ +++++.. ...... .......+| ++...++. + ..+|. .+|.++|+++|.. ..| +.+++.+
T Consensus 227 ~---~~~~~~~-~~~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~-------~~p~~~~~~~~~ 293 (391)
T 3eaf_A 227 F---LLTNVWG-FDERSP-QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGV-------SEDQINLRVVQG 293 (391)
T ss_dssp E---EEECGGG-CSTTHH-HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTC-------CGGGCCHHHHHH
T ss_pred e---EEEeccC-CCHHHH-HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCC-------CCcccccHHHHH
Confidence 4 5554332 211111 122356888 77766554 1 23354 6799999998741 233 4789999
Q ss_pred hHHHHHHHHHHHhh---c--cCCCChHHHHHHHHcCcee--ceee-eEEEeCCCCCCCCeEEEEEe-eCCceEEEEEecC
Q 004136 333 HDSIKIITEAIGRL---N--YNISSPEMLLRQMLSSDFS--GLSG-KIRFKDGELLNADTLRIVNV-VGKKYKELDFWLP 403 (771)
Q Consensus 333 YDav~~~a~Al~~~---~--~~~~~~~~l~~~l~~~~f~--G~tG-~v~Fd~~g~~~~~~~~I~~~-~~~~~~~vg~w~~ 403 (771)
|||++++++|++++ + . .+++.+.++|++.+|+ |++| +++||++|++....+.|+++ ++|+|+.++.|..
T Consensus 294 yda~~~l~~Al~~a~~~g~~~--~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~G~~~~v~~~~~ 371 (391)
T 3eaf_A 294 FVNVWLLIKAIESVTSQDLQE--RGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGENGELQLMGKFEA 371 (391)
T ss_dssp HHHHHHHHHHHTTSCHHHHHH--HTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecCCEEEEeeeecC
Confidence 99999999999999 6 5 6899999999998898 9999 99999877777789999999 8999999999986
Q ss_pred CC
Q 004136 404 NF 405 (771)
Q Consensus 404 ~~ 405 (771)
..
T Consensus 372 ~~ 373 (391)
T 3eaf_A 372 PS 373 (391)
T ss_dssp CT
T ss_pred cc
Confidence 54
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=1.3e-35 Score=319.16 Aligned_cols=340 Identities=10% Similarity=0.110 Sum_probs=287.8
Q ss_pred CCcEEEEEEEeCCC---cCchHHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCc
Q 004136 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (771)
Q Consensus 32 ~~~I~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~--~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 106 (771)
+++|+||+++|+++ ..|.....|+++|++++|++| .|+++++++.|+++++..+.+.+++|+.+++|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 82 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVVG 82 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 47899999999984 467889999999999999998 5899999999999999999999999996679999999999
Q ss_pred hHhHHHHHH--hhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcc
Q 004136 107 WEETAVVAE--IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSG 184 (771)
Q Consensus 107 s~~~~~v~~--~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~ 184 (771)
|..+.++++ +++..++|+|++.++ ++.+++ +|++||+.|++..++.++++++.+++|++|++|+.+++|| ..
T Consensus 83 s~~~~~~~~~~~~~~~~iP~v~~~~~--~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g--~~ 156 (364)
T 3lop_A 83 TANVEALMREGVLAEARLPLVGPATG--ASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALG--KE 156 (364)
T ss_dssp HHHHHHHHHTTHHHHHTCCEESCSCC--CGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHH--HH
T ss_pred CHHHHhhCchhhHHhcCCcEEEcccC--cHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhh--HH
Confidence 999999999 999999999999888 777766 7999999999999999999999999999999999999999 88
Q ss_pred hHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEE
Q 004136 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (771)
Q Consensus 185 ~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (771)
..+.+++.+++.| +++.....++... .++..+++++++.++++|++ .++...+..++++++++|+..+ |
T Consensus 157 ~~~~~~~~~~~~G-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~~---~ 225 (364)
T 3lop_A 157 AITGVERTLKAHA-LAITAMASYPRNT------ANVGPAVDKLLAADVQAIFL-GATAEPAAQFVRQYRARGGEAQ---L 225 (364)
T ss_dssp HHHHHHHHHHTTT-CCCSEEEEECTTS------CCCHHHHHHHHHSCCSEEEE-ESCHHHHHHHHHHHHHTTCCCE---E
T ss_pred HHHHHHHHHHHcC-CcEEEEEEecCCC------ccHHHHHHHHHhCCCCEEEE-ecCcHHHHHHHHHHHHcCCCCe---E
Confidence 9999999999999 9988777776654 46888999999999999999 9999999999999999999764 6
Q ss_pred EeeCcccccccccChhhh-hccccEEEEEee---ccCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHH
Q 004136 265 IVTNTVANALDSLNTTVI-SSMEGTLGIKSY---YSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIIT 340 (771)
Q Consensus 265 i~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a 340 (771)
++.+.+... ... .... +..+|++..... ....+|..++|.++|+++|... ..|+.+++.+|||+++++
T Consensus 226 i~~~~~~~~-~~~-~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~p~~~a~~~yda~~~~~ 297 (364)
T 3lop_A 226 LGLSSIDPG-ILQ-KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKD------VDLSFRAVEGFVAAKVLA 297 (364)
T ss_dssp EECTTSCHH-HHH-HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTT------CCCCHHHHHHHHHHHHHH
T ss_pred EEeccCChH-HHH-HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCC------CCCChHHHHHHHHHHHHH
Confidence 666554321 111 1222 467787766532 1133488999999999987321 157889999999999999
Q ss_pred HHHHhhccCCCChHHHHHHHHcC-ceec-eeeeEEEeCCCCCCCCeEEEEEeeCCceEE
Q 004136 341 EAIGRLNYNISSPEMLLRQMLSS-DFSG-LSGKIRFKDGELLNADTLRIVNVVGKKYKE 397 (771)
Q Consensus 341 ~Al~~~~~~~~~~~~l~~~l~~~-~f~G-~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~ 397 (771)
+|+++++.. .+++.|+++|+++ +|+| .+|+++|+++++.......|.+++++++.+
T Consensus 298 ~al~~ag~~-~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~~ 355 (364)
T 3lop_A 298 EAIRRAGPK-PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLVI 355 (364)
T ss_dssp HHHHHHCSS-CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCEE
T ss_pred HHHHHhCCC-CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCccc
Confidence 999999732 7999999999999 7999 999999998887776778888887665443
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=4.1e-35 Score=317.96 Aligned_cols=339 Identities=18% Similarity=0.250 Sum_probs=281.9
Q ss_pred CCcEEEEEEEeCCCc---CchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchH
Q 004136 32 EEVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~ 108 (771)
.++|+||+++|++++ .|.....|+++|++++| |+++++++.|+++++..+.+.+++|+.+++|.+||||.+|.
T Consensus 25 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~----G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~ 100 (386)
T 3sg0_A 25 QAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG----GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTP 100 (386)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET----TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCSSHH
T ss_pred CCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC----CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCCCch
Confidence 368999999999954 57789999999999984 68999999999999999999999999666999999999999
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCcc--CCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchH
Q 004136 109 ETAVVAEIASRVQVPILSFAAPAVTPLSM--SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (771)
Q Consensus 109 ~~~~v~~~~~~~~iP~Is~~a~~~~~~l~--~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 186 (771)
.+.++.++++..++|+|++.++ ++.+. ...+|++||+.|++..++.++++++.+++|++|++|+.++++| ....
T Consensus 101 ~~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~ 176 (386)
T 3sg0_A 101 VSLPLIDIAAEAKTPLMTMAAA--AILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYG--EGYY 176 (386)
T ss_dssp HHHHHHHHHHHTTCCEEECCCC--GGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHH
T ss_pred hHHHHHHHHHhcCCeEEEecCC--CccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHH--HHHH
Confidence 9999999999999999999988 77776 4678999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEe
Q 004136 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (771)
Q Consensus 187 ~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~ 266 (771)
+.+++.+++.| +++...+.++... .++...+.++++.++++|++ .++...+..++++++++|+..+ ++.
T Consensus 177 ~~~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~~~~~~~dav~~-~~~~~~a~~~~~~~~~~g~~~~---~~~ 245 (386)
T 3sg0_A 177 KVLAAAAPKLG-FELTTHEVYARSD------ASVTGQVLKIIATKPDAVFI-ASAGTPAVLPQKALRERGFKGA---IYQ 245 (386)
T ss_dssp HHHHHHHHHHT-CEECCCEEECTTC------SCCHHHHHHHHHTCCSEEEE-ECCSGGGHHHHHHHHHTTCCSE---EEC
T ss_pred HHHHHHHHHcC-CEEEEEEeeCCCC------CcHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCCc---EEe
Confidence 99999999999 9988766666554 45888899999999999999 8988899999999999999864 566
Q ss_pred eCcccccccccChhhhhccccEEEEEee------ccCCC---hhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHH
Q 004136 267 TNTVANALDSLNTTVISSMEGTLGIKSY------YSDDS---SPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIK 337 (771)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~ 337 (771)
.+.+... ... .......+|++....+ .+..+ +..++|.++|+++|... .|+.+++.+||+++
T Consensus 246 ~~~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-------~p~~~~~~~yda~~ 316 (386)
T 3sg0_A 246 THGVATE-EFI-KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGGA-------APTIFGVHLWDSMT 316 (386)
T ss_dssp CGGGCSH-HHH-HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTTC-------CCCHHHHHHHHHHH
T ss_pred ccccCCH-HHH-HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCCC-------CCChhHHHHHHHHH
Confidence 5554321 111 1223567888776532 12222 35788999999887421 46789999999999
Q ss_pred HHHHHHHhhccC-----CCChHHHHHHHHcC-ceeceeeeEEEeCCCCC--CCCeEEEEEeeCCceEEE
Q 004136 338 IITEAIGRLNYN-----ISSPEMLLRQMLSS-DFSGLSGKIRFKDGELL--NADTLRIVNVVGKKYKEL 398 (771)
Q Consensus 338 ~~a~Al~~~~~~-----~~~~~~l~~~l~~~-~f~G~tG~v~Fd~~g~~--~~~~~~I~~~~~~~~~~v 398 (771)
++++|++++.+. +.+++.++++|+++ +|+|++|+++|+++++. .+..+.|+++++|+|+.+
T Consensus 317 ~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~~ 385 (386)
T 3sg0_A 317 LVENAIPAALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAFRLK 385 (386)
T ss_dssp HHHHHHHHHHHHCCTTSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred HHHHHHHHhhhccCCCCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEEEec
Confidence 999999998421 12478999999999 89999999999976543 235689999999998865
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=5.1e-33 Score=301.11 Aligned_cols=347 Identities=13% Similarity=0.139 Sum_probs=281.5
Q ss_pred CCCcEEEEEEEeCCCc---CchHHHHHHHHHHHHHhcCCC--CcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 004136 31 IEEVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDSR--NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME 105 (771)
Q Consensus 31 ~~~~I~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~~~~--g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~ 105 (771)
++++++||+++|+++. .+.....|+++|++++|++++ |+++++++.|+++++..+.+.+++|+.+++|.+|||+.
T Consensus 4 ~~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 83 (385)
T 1pea_A 4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCY 83 (385)
T ss_dssp ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred CCCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCC
Confidence 3578999999999843 678899999999999999984 89999999999999999999999999668999999999
Q ss_pred chHhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcch
Q 004136 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (771)
Q Consensus 106 ~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (771)
++..+.++.+++...++|+|++.+. .. ...++++||+.+++..+++.+++++.+.+|++|++|+.++.++ ...
T Consensus 84 ~s~~~~~~~~~~~~~~iP~v~~~~~--~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~ 156 (385)
T 1pea_A 84 MSHTRKAVMPVVERADALLCYPTPY--EG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYP--RES 156 (385)
T ss_dssp SHHHHHHHHHHHHHTTCEEEECSCC--CC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHH--HHH
T ss_pred chHHHHHHHHHHHhcCceEEECCcc--cC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHH--HHH
Confidence 9888888899999999999988754 21 1246789999999999999999999998999999999987788 888
Q ss_pred HHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEE
Q 004136 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (771)
Q Consensus 186 ~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i 265 (771)
.+.+++.+++.| +++.....++... ...++...++++++.++++|++ .++...+..++++++++|+.++.+.++
T Consensus 157 ~~~~~~~l~~~G-~~v~~~~~~~~~~----~~~d~~~~~~~l~~~~pdaI~~-~~~~~~a~~~~~~~~~~G~~~~~~~~~ 230 (385)
T 1pea_A 157 NHVMRHLYRQHG-GTVLEEIYIPLYP----SDDDLQRAVERIYQARADVVFS-TVVGTGTAELYRAIARRYGDGRRPPIA 230 (385)
T ss_dssp HHHHHHHHHHTT-CEEEEEEEECSSC----CHHHHHHHHHHHHHHTCSEEEE-ECCTHHHHHHHHHHHHHHCSSCCCCEE
T ss_pred HHHHHHHHHHcC-CEEEEEEeecCCC----CcchHHHHHHHHHHCCCCEEEE-ecccccHHHHHHHHHHcCCCcCCceEE
Confidence 899999999999 9988765554311 1167889999999889999999 888888999999999999986544455
Q ss_pred eeCcccccccccChhhhhccccEEEEEeecc-CCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHH
Q 004136 266 VTNTVANALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIG 344 (771)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~ 344 (771)
..+.......... .+..+|++...++.. ..+|..++|.++|+++|... ..++.+++.+|||++++++|++
T Consensus 231 ~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~------~~~~~~~~~~yda~~~~~~Al~ 301 (385)
T 1pea_A 231 SLTTSEAEVAKME---SDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPEN------ATITAWAEAAYWQTLLLGRAAQ 301 (385)
T ss_dssp ESSCCHHHHTTSC---HHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTT------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred ecccchHHHHhcC---chhhCCeEEecccccccCCHHHHHHHHHHHHHhCCC------CCCChHHHHHHHHHHHHHHHHH
Confidence 4432211111111 145788887765543 23478899999998877321 1367789999999999999999
Q ss_pred hhccCCCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEe-eCCceEEEEEe
Q 004136 345 RLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV-VGKKYKELDFW 401 (771)
Q Consensus 345 ~~~~~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~-~~~~~~~vg~w 401 (771)
++++ .+++.|+++|++++|+|++|+++||++++.....+.|.++ ++|+|+.|...
T Consensus 302 ~ag~--~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 302 AAGN--WRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp HHTS--CCHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred HhCC--CCHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 9987 6899999999999999999999999865544577889999 78999988655
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=4.8e-33 Score=298.86 Aligned_cols=337 Identities=19% Similarity=0.230 Sum_probs=278.9
Q ss_pred CCcEEEEEEEeCCCc---CchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchH
Q 004136 32 EEVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~ 108 (771)
.++|+||+++|+++. .|.....|+++|++++| |+++++++.|+++++..+.+.+++|+.+++|.+||||.++.
T Consensus 5 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~----g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~ 80 (362)
T 3snr_A 5 TNEITVGISVTTTGPAAALGIPERNALEFVVKEIS----GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSSVTP 80 (362)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET----TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred CCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC----CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcCCCcH
Confidence 478999999999853 57788999999999984 68999999999999999999999999666999999999999
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHH
Q 004136 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (771)
Q Consensus 109 ~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (771)
.+.++.+++...++|+|++.++ + +....+|++||+.|++..++..+++++.++||++|++|+.++.+| ....+.
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~~~ 154 (362)
T 3snr_A 81 PSVAISNVANEAQIPHIALAPL---P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYG--DLWFND 154 (362)
T ss_dssp HHHHHHHHHHHHTCCEEESSCC---C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHH
T ss_pred HHHHHHHHHHHcCccEEEecCC---c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHH--HHHHHH
Confidence 9999999999999999998765 2 234567999999999999999999999999999999999998899 889999
Q ss_pred HHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeC
Q 004136 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (771)
Q Consensus 189 l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~ 268 (771)
+++.+++.| +++.....++... .++...+.++++.++++|++ .+....+..++++++++|+..+ ++...
T Consensus 155 ~~~~l~~~g-~~v~~~~~~~~~~------~~~~~~~~~l~~~~~dav~~-~~~~~~a~~~~~~~~~~g~~~p---~i~~~ 223 (362)
T 3snr_A 155 LKKQGEAMG-LKIVGEERFARPD------TSVAGQALKLVAANPDAILV-GASGTAAALPQTTLRERGYNGL---IYQTH 223 (362)
T ss_dssp HHHHHHHTT-CEEEEEEEECTTC------SCCHHHHHHHHHHCCSEEEE-ECCHHHHHHHHHHHHHTTCCSE---EEECG
T ss_pred HHHHHHHcC-CEEEEEeecCCCC------CCHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCcc---EEecc
Confidence 999999999 9988777776654 45788889999889999999 8889999999999999999875 45555
Q ss_pred cccccccccChhhhhccccEEEEEee------ccCC---ChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHH
Q 004136 269 TVANALDSLNTTVISSMEGTLGIKSY------YSDD---SSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKII 339 (771)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~ 339 (771)
++... ... .......+|++....+ .+.. +|..++|.++|+++|... .|+.+++.+|||++++
T Consensus 224 g~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-------~p~~~~~~~yda~~~~ 294 (362)
T 3snr_A 224 GAASM-DFI-RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGPS-------SRSQFAGHSYDAFKVL 294 (362)
T ss_dssp GGCSH-HHH-HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCTT-------CCCHHHHHHHHHHHHH
T ss_pred CcCcH-HHH-HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCCC-------CCCchhHhHHHHHHHH
Confidence 44321 111 1223567888776532 1111 256899999999988421 4788999999999999
Q ss_pred HHHHHhhccC-----CCChHHHHHHHHcC-ceeceeeeEEEeCCCCC--CCCeEEEEEeeCCceEEE
Q 004136 340 TEAIGRLNYN-----ISSPEMLLRQMLSS-DFSGLSGKIRFKDGELL--NADTLRIVNVVGKKYKEL 398 (771)
Q Consensus 340 a~Al~~~~~~-----~~~~~~l~~~l~~~-~f~G~tG~v~Fd~~g~~--~~~~~~I~~~~~~~~~~v 398 (771)
++|++++++. +.+++.|+++|+++ +|+|++|+++|++++++ .+..+.|+++++|+|+.|
T Consensus 295 ~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~v 361 (362)
T 3snr_A 295 ERVVPVALKKAKPGTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKYVIV 361 (362)
T ss_dssp HHHHHHHHHHCCTTSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred HHHHHHhhccccCCCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEEEEc
Confidence 9999998531 13478999999999 89999999999976443 236789999999998865
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.96 E-value=8e-29 Score=258.18 Aligned_cols=310 Identities=12% Similarity=0.094 Sum_probs=243.0
Q ss_pred EEEEEEeCCC---cCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHH
Q 004136 36 KIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (771)
Q Consensus 36 ~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~ 112 (771)
|||+++|+|+ ..|...++|+++|. +|++++++++|+.+++ +...+++++ +++|.+||||.+|..+.+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~-------~G~~i~l~~~D~~~~~--a~~~~~~l~-~~~v~~IiGp~~s~~~~a 71 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK-------GNSTIPVQVFDTSMNS--VQDIIAQAK-QAGIKTLVGPLLKQNLDV 71 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH-------TTCCSCEEEEETTTSC--HHHHHHHHH-HTTCCEEECCCSHHHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc-------cCCCceEEEEECCCCh--HHHHHHHHH-HCCCCEEEeeCCHHHHHH
Confidence 6999999995 46889999999986 4789999999999997 567778888 789999999999999999
Q ss_pred HHHhh-ccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHH
Q 004136 113 VAEIA-SRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (771)
Q Consensus 113 v~~~~-~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (771)
+++.+ ...++|+|+++++ . ......+.|+||+.| ..+++++++++...|.+++++|+.+++|| +...+.|++
T Consensus 72 ~~~~~~~~~~vp~i~~~~~--~-~~~~~~~~~~f~~~~--~~~~~~~a~~a~~~g~k~vail~~~~~yG--~~~~~~F~~ 144 (325)
T 2h4a_A 72 ILADPAQIQGMDVLALNAT--P-NSRAIPQLCYYGLSP--EDEAESAANKMWNDGVRNPLVAMPQNDLG--QRVGNAFNV 144 (325)
T ss_dssp HHHCGGGGTTCEEEESCCC--S-SCCCCTTEEECCCCH--HHHHHHHHHHHHHTTCCSCEEEEESSHHH--HHHHHHHHH
T ss_pred HHhhhhccCCCcEEECCCC--c-cccCCCCeEEEECCH--HHHHHHHHHHHHHcCCCeEEEEEcCCcHH--HHHHHHHHH
Confidence 99998 7899999998776 3 333334456777655 45789999999888999999999999999 999999999
Q ss_pred HHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeCccc
Q 004136 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271 (771)
Q Consensus 192 ~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~ 271 (771)
.+++.| ++|+..+.+... .|+..+|+++. .++|+|++ .++..++..+.++++..+... ..+.++.+.
T Consensus 145 ~~~~~G-g~vv~~~~y~~~-------~d~~~~l~~i~-~~pDaV~~-~~~~~~~~~i~~~~~~~g~~~---pl~~~~~~~ 211 (325)
T 2h4a_A 145 RWQQLA-GTDANIRYYNLP-------ADVTYFVQENN-SNTTALYA-VASPTELAEXKGYLTNIVPNL---AIYASSRAS 211 (325)
T ss_dssp HHHHHH-SSCCEEEEESST-------THHHHHHHHST-TCCCEEEE-CCCHHHHHHHHHHHTTTCTTC---EEEECGGGC
T ss_pred HHHHcC-CCcceeEecCCH-------HHHHHHHHhcC-CCCCEEEE-eCCHHHHhhhhhhHhhcCCCC---CEEEecccc
Confidence 999999 999988888753 37999999984 68999999 999999998889988876655 466666654
Q ss_pred ccccccChhhhhccccEEEEE-eeccC-CChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHhhccC
Q 004136 272 NALDSLNTTVISSMEGTLGIK-SYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYN 349 (771)
Q Consensus 272 ~~~~~~~~~~~~~~~g~~~~~-~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~~~~ 349 (771)
.............++|++... ++... .++.+++|.+.|+..+ .+....+++|||+.++.++ .++
T Consensus 212 ~~s~~~~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----------~~~rl~AlgyDA~~l~~~l-~~l--- 277 (325)
T 2h4a_A 212 ASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----------QLMRLYAMGADAWLLINQF-NEL--- 277 (325)
T ss_dssp CHHHHTCHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----------HHHHHHHHHHHHHHHHHTH-HHH---
T ss_pred ccCCCCCchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----------chHHHHHHHHHHHHHHHHH-HHH---
Confidence 101112233346789987765 33322 2356777766553322 2556789999999987664 221
Q ss_pred CCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEeeCCceEEE
Q 004136 350 ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKEL 398 (771)
Q Consensus 350 ~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~v 398 (771)
+.+.+..|+|+||.++||++|+.. ..+.+.++++|+++.|
T Consensus 278 --------~~~~~~~~~G~tG~l~~~~~g~~~-R~l~~~~~~~G~~~~~ 317 (325)
T 2h4a_A 278 --------RQVPGYRLSGLTGILSADTNCNVE-RDMTWYQYQDGAIVPV 317 (325)
T ss_dssp --------HHSTTCCEEETTEEEEECTTCBEE-EECEEEEEETTEEEEC
T ss_pred --------hhCCCCeeccCceeEEECCCCeEE-EeechhhccCCeEEEe
Confidence 123446899999999999999875 8899999999998876
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.96 E-value=2.2e-28 Score=257.88 Aligned_cols=314 Identities=13% Similarity=0.091 Sum_probs=240.3
Q ss_pred EEEEEEEeCCC---cCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 35 TKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 35 I~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
+|||+++|+|+ ..|....+|+++|++ |++++++++|++++|..++ .+++.+++|.+||||.+|+.+.
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~-------g~~i~l~~~D~~~~~~~aa---~~~~~~~~v~~iiGp~~s~~~~ 72 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG-------NSTIPVQVFDTSMNSVQDI---IAQAKQAGIKTLVGPLLKQNLD 72 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT-------TCCSCEEEEETTTSCHHHH---HHHHHHTTCCEEECCCSHHHHH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC-------CCCceEEEEeCCCCHHHHH---HHHHHHcCCeEEEEccccccch
Confidence 78999999995 458889999998863 5789999999999997653 3455589999999999998888
Q ss_pred HHHHhh-ccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHH
Q 004136 112 VVAEIA-SRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (771)
Q Consensus 112 ~v~~~~-~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (771)
+++... +...+|+++.+++ +.. ...|++||+.+++..++.++++++...+++++++++.+++|| ....+.|+
T Consensus 73 a~~~~~~~~~~v~~~~~~~~---~~~--~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg--~~~~~~f~ 145 (327)
T 3ckm_A 73 VILADPAQIQGMDVLALNAT---PNS--RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLG--QRVGNAFN 145 (327)
T ss_dssp HHHHCGGGGTTCEEEESCCC---TTC--CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHH--HHHHHHHH
T ss_pred hhHHHHHhccCceEeccCcC---ccc--ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHH--HHHHHHHH
Confidence 876654 4556666655444 322 345789999999999999999999999999999999999999 99999999
Q ss_pred HHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeCcc
Q 004136 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTV 270 (771)
Q Consensus 191 ~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (771)
+.+++.| ++|+..+.++... ....+.+++..++|+|++ ...+.++..+++++++.|+..+ ++.++.+
T Consensus 146 ~~~~~~G-g~vv~~~~~~~~~--------~~~~~~~~~~~~~dai~~-~~~~~~~~~i~~q~~~~g~~~~---~~~~~~~ 212 (327)
T 3ckm_A 146 VRWQQLA-GTDANIRYYNLPA--------DVTYFVQENNSNTTALYA-VASPTELAEMKGYLTNIVPNLA---IYASSRA 212 (327)
T ss_dssp HHHHHHH-SSCCEEEEESSTT--------HHHHHHHHSCTTCCEEEE-CCCHHHHHHHHHHHTTTCTTCE---EEECGGG
T ss_pred HHHHHCC-CeEEEEEECCCCc--------hhhHHHHHhccCCcEEEE-EcCHHHHHHHHHHHHhhhccCC---EEeeecc
Confidence 9999999 9999988886554 345567788889999999 9999999999999999998764 6666554
Q ss_pred cccccccChhhhhccccEEEEEe-ec-cCCChhHHHHHHHHHHhcccCCCCCCCCCCchhhhhHhHHHHHHHHHHHhhcc
Q 004136 271 ANALDSLNTTVISSMEGTLGIKS-YY-SDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (771)
Q Consensus 271 ~~~~~~~~~~~~~~~~g~~~~~~-~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDav~~~a~Al~~~~~ 348 (771)
................|++.... +. ...++..++|.++|++.|. +..+.+++|||+.++.++.+.
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----------~~~~~AlgyDA~~l~~~l~~~--- 279 (327)
T 3ckm_A 213 SASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----------LMRLYAMGADAWLLINQFNEL--- 279 (327)
T ss_dssp CCHHHHTCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHTHHHH---
T ss_pred ccccchhcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC----------CCchHHHHHHHHHHHHHHHHh---
Confidence 43222222222234567665543 22 2234677777777665542 334678999999887655432
Q ss_pred CCCChHHHHHHHHcCceeceeeeEEEeCCCCCCCCeEEEEEeeCCceEEEEEe
Q 004136 349 NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFW 401 (771)
Q Consensus 349 ~~~~~~~l~~~l~~~~f~G~tG~v~Fd~~g~~~~~~~~I~~~~~~~~~~vg~w 401 (771)
+.+....|+|+||.++||++|+.. ..+.+.++++|++++|..-
T Consensus 280 ---------~~~~~~~f~G~tG~i~fd~~G~~~-r~l~~~~~~~G~~vpv~d~ 322 (327)
T 3ckm_A 280 ---------RQVPGYRLSGLTGILSADTNCNVE-RDMTWYQYQDGAIVPVVDH 322 (327)
T ss_dssp ---------HHSTTCCEEETTEEEEECTTCBEE-EECEEEEEETTEEEECC--
T ss_pred ---------cCCCCCCceeceEEEEECCCCCCc-cccEEEEEECCEEEEcccc
Confidence 223445799999999999999865 7889999999999998654
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.88 E-value=6.1e-23 Score=214.90 Aligned_cols=232 Identities=17% Similarity=0.293 Sum_probs=165.2
Q ss_pred ccccCCCCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecC---------CC
Q 004136 445 GWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH---------DG 515 (771)
Q Consensus 445 ~~~~~~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~---------~~ 515 (771)
.+....++++|+|++...| ||.+.++.... .+++.++.||++||++++++++|++++++..+. ++
T Consensus 5 ~l~~i~~~~~l~V~~~~~~---P~~~~~~~~~~---~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~ 78 (312)
T 1yae_A 5 NITDSLSNRSLIVTTILEE---PYVLFKKSDKP---LYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNG 78 (312)
T ss_dssp CCTTTTCSCEEEEEECCBT---TTBEECCCSSC---CCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTC
T ss_pred chhhhhcCceEEEEEeccC---CeeEEeccccc---cCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCC
Confidence 3444567789999998765 45665421000 001228999999999999999999977776542 46
Q ss_pred ChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCC--CCccccccCCCHHHHHHHHHHHHHHHH
Q 004136 516 VYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE--ESTWMFTKPFTWEMWMVTAASFIYTMF 593 (771)
Q Consensus 516 ~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~--~~~~~~~~pF~~~vW~~i~~~~~~~~~ 593 (771)
+|++++.+|.+|++|++++++++|.+|.+.++||.||+..+..++++++.. .++|.|+.||+..
T Consensus 79 ~~~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~-------------- 144 (312)
T 1yae_A 79 QWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLV-------------- 144 (312)
T ss_dssp CBCSHHHHHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC--------------------------------
T ss_pred cchHHHHHHhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccC--------------
Confidence 899999999999999999999999999999999999999999999998763 3788999999910
Q ss_pred hhhhhccccCccCcCcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCC
Q 004136 594 IVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNV 673 (771)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i 673 (771)
| | |++++...|
T Consensus 145 ---------------------------------------p-----~-------------------------tv~~~~~~i 155 (312)
T 1yae_A 145 ---------------------------------------P-----R-------------------------GSERMESPI 155 (312)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred ---------------------------------------C-----c-------------------------ccccccCCC
Confidence 0 0 334555669
Q ss_pred CChhHhhhC-CceEEEecChHHHHHHHHhcCCC-----------CCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHH
Q 004136 674 TDIQSLKSG-NLKVGCVDDSFVKKYLEEVLGFR-----------SGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVF 741 (771)
Q Consensus 674 ~~~~dL~~~-~~~~g~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~ 741 (771)
++++||... ++++|+..++....++.+. ... ..++..+.+ .++++++|.+|+ ||++.+...+.|+
T Consensus 156 ~~~~dL~g~~~~~vg~v~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~G~-Da~i~~~~~~~~~ 232 (312)
T 1yae_A 156 DSADDLAKQTKIEYGAVEDGATMTFFKKS-KISTYDKMWAFMSSRRQSVLVKS-NEEGIQRVLTSD-YAFLMESTTIEFV 232 (312)
T ss_dssp CSHHHHHTCSSSEEECBTTSHHHHHHHHC-CBHHHHHHHHHHHHTHHHHCBSS-HHHHHHHHHHSS-EEEEEEHHHHHHH
T ss_pred CCHHHHhhccCceEEEEeCChHHHHHHhc-cCchHHHHHHHHHhcCCCcccCC-HHHHHHHHHcCC-cEEEeccHHHHHH
Confidence 999999943 4589987665556666551 111 113556777 999999999999 9999999999999
Q ss_pred HHhcCCceeEee-eeeeceEEEEEecCCC
Q 004136 742 LDKYCKKYTAIN-TYRFGGLGFVSNIIYS 769 (771)
Q Consensus 742 ~~~~c~~l~~~~-~~~~~~~g~~~~k~s~ 769 (771)
++++|+ +.+++ .+...+|+++++|+++
T Consensus 233 ~~~~~~-l~~~~~~~~~~~~~~a~~k~~~ 260 (312)
T 1yae_A 233 TQRNCN-LTQIGGLIDSKGYGVGTPMGSP 260 (312)
T ss_dssp HTTCTT-EEEESSCSSCEEEEEEEETTCS
T ss_pred HhcCCC-EEEecccccccceEEEEeCCCC
Confidence 998887 99998 8888999999999987
No 39
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.86 E-value=3.3e-22 Score=206.90 Aligned_cols=198 Identities=17% Similarity=0.278 Sum_probs=157.4
Q ss_pred CCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecC---------C----CChH
Q 004136 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH---------D----GVYD 518 (771)
Q Consensus 452 ~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~---------~----~~~~ 518 (771)
.++++|++. +.|+||.+.+.++ ++.||++||+++|++++|++++++.+++ + ++|+
T Consensus 40 ~~~l~vg~~--~~~~P~~~~~~~g----------~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~ 107 (292)
T 1pb7_A 40 KKVICTGPN--DTSPGSPRHTVPQ----------CCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWN 107 (292)
T ss_dssp CCEEEEEEC----------CEEEE----------EEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEEC
T ss_pred cceeecccC--CCCCCcccccccc----------CcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHH
Confidence 356777763 3455666554444 8999999999999999999987777642 1 3799
Q ss_pred HHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhh
Q 004136 519 DLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLL 598 (771)
Q Consensus 519 ~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~ 598 (771)
+++++|.+|++|++++++++|++|.+.++||.||+..++.+++++++.
T Consensus 108 ~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~-------------------------------- 155 (292)
T 1pb7_A 108 GMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTR-------------------------------- 155 (292)
T ss_dssp HHHHHHHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCC--------------------------------
T ss_pred HHHHHHHcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcC--------------------------------
Confidence 999999999999999999999999999999999999999999998763
Q ss_pred ccccCccCcCcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhH
Q 004136 599 EHQSNPEFRGTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQS 678 (771)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~d 678 (771)
+++++|
T Consensus 156 --------------------------------------------------------------------------i~~~~d 161 (292)
T 1pb7_A 156 --------------------------------------------------------------------------ITGIND 161 (292)
T ss_dssp --------------------------------------------------------------------------CCSTTC
T ss_pred --------------------------------------------------------------------------CCCCcC
Confidence 677888
Q ss_pred hhhCC----ceEEEecChHHHHHHHHhcCC----CCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCcee
Q 004136 679 LKSGN----LKVGCVDDSFVKKYLEEVLGF----RSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYT 750 (771)
Q Consensus 679 L~~~~----~~~g~~~~s~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~ 750 (771)
|...+ ..+|+..++..+.++++.... +..++..+.+ .++++++|++|++||++.+...+.|+++++|+ ++
T Consensus 162 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~-l~ 239 (292)
T 1pb7_A 162 PRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYES-AAEAIQAVRDNKLHAFIWDSAVLEFEASQKCD-LV 239 (292)
T ss_dssp HHHHSCBTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSS-HHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-EE
T ss_pred ccccCcccceEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCC-HHHHHHHHHcCCceEEEEcHHHHHHHHhcCCC-EE
Confidence 86333 346888888887777542110 1124556777 99999999999999999999999999999997 99
Q ss_pred Eee-eeeeceEEEEEecCCC
Q 004136 751 AIN-TYRFGGLGFVSNIIYS 769 (771)
Q Consensus 751 ~~~-~~~~~~~g~~~~k~s~ 769 (771)
+++ .+...+|||+++|+++
T Consensus 240 ~~~~~~~~~~~~ia~~k~~~ 259 (292)
T 1pb7_A 240 TTGELFFRSGFGIGMRKDSP 259 (292)
T ss_dssp ECSSCSEEEEECCEEETTCS
T ss_pred EcCccccCCceEEEEeCCCH
Confidence 998 8889999999999986
No 40
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.85 E-value=2e-21 Score=195.55 Aligned_cols=198 Identities=15% Similarity=0.260 Sum_probs=165.0
Q ss_pred CCCceEEEeccCCCccceEEecc-CCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccc
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKD-DPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTY 529 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~-~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~ 529 (771)
+.++|+|++ .+.|+||.+... |+ +.++.||++||++++++++|++++++ +. .|++++..|.+|++
T Consensus 10 ~~g~L~Vg~--~~~~pP~~~~~~~d~--------~g~~~G~~vdl~~~ia~~lg~~~~~~--~~--~~~~~~~~l~~g~~ 75 (243)
T 4h5g_A 10 QKGKLVVAT--SPDYAPFEFQSLVDG--------KNQVVGADIDMAQAIADELGVKLEIL--SM--SFDNVLTSLQTGKA 75 (243)
T ss_dssp HHTEEEEEE--CCCBTTTBEEEEETT--------EEEEESHHHHHHHHHHHHHTSEEEEE--EC--CGGGHHHHHHTTSC
T ss_pred hCCEEEEEE--CCCCCCcEeeeccCC--------CCcEEEeHHHHHHHHHHHhCCceEEe--cc--cHHHHHHHHHcCCC
Confidence 457899998 446778877532 33 22899999999999999999996555 43 59999999999999
Q ss_pred cEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCc
Q 004136 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGT 609 (771)
Q Consensus 530 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (771)
|++++++++|++|.+.++||.||+..+..+++++.+...
T Consensus 76 d~~~~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~~~----------------------------------------- 114 (243)
T 4h5g_A 76 DLAVAGISATDERKEVFDFSIPYYENKISFLVHKADVEK----------------------------------------- 114 (243)
T ss_dssp SEECSSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGTTT-----------------------------------------
T ss_pred CcccccccCChhHccEEEccCccccCccccccccccccc-----------------------------------------
Confidence 999999999999999999999999999999998876431
Q ss_pred ccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEe
Q 004136 610 LKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCV 689 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~ 689 (771)
+++++||. +.++|+.
T Consensus 115 ---------------------------------------------------------------~~~~~dl~--g~~i~v~ 129 (243)
T 4h5g_A 115 ---------------------------------------------------------------YKDLTSLE--SANIAAQ 129 (243)
T ss_dssp ---------------------------------------------------------------CCSHHHHH--TSEEEEE
T ss_pred ---------------------------------------------------------------ccccccCC--CCEEEec
Confidence 78999999 9999999
Q ss_pred cChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCC-ceeEee--eeeeceEEEEEec
Q 004136 690 DDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCK-KYTAIN--TYRFGGLGFVSNI 766 (771)
Q Consensus 690 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~-~l~~~~--~~~~~~~g~~~~k 766 (771)
.++..+.++.+. .+..++..+.+ ..+++++|.+|++|+++.+...+.+++.++.+ .+..+. ......++|+++|
T Consensus 130 ~g~~~~~~l~~~--~~~~~i~~~~~-~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k 206 (243)
T 4h5g_A 130 KGTVPESMVKEQ--LPKAQLTSLTN-MGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRK 206 (243)
T ss_dssp TTSHHHHHHHHH--CTTSEEEEESC-HHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEES
T ss_pred CCcHHHHHHHHh--cccceeEEeCC-HHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeC
Confidence 999999998875 56678888998 99999999999999999999999888887765 122233 4556789999999
Q ss_pred CCCCC
Q 004136 767 IYSHL 771 (771)
Q Consensus 767 ~s~~l 771 (771)
++|.|
T Consensus 207 ~~~~L 211 (243)
T 4h5g_A 207 NSDDL 211 (243)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 98753
No 41
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.85 E-value=3.4e-21 Score=199.66 Aligned_cols=177 Identities=18% Similarity=0.371 Sum_probs=150.7
Q ss_pred ccccchHHHHHHHHHHCCCcccEEEecC-------CCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEE
Q 004136 486 RYDGFSIELFRLVVDHLNYDLPYEFVPH-------DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFS 558 (771)
Q Consensus 486 ~~~G~~~~l~~~~a~~l~f~~~~~~~~~-------~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~ 558 (771)
++.||++||+++|++++|++++++.+++ .++|++++++|.+|++|++++++++|.+|.+.++||.||+..+..
T Consensus 67 ~~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~ 146 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLG 146 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEE
T ss_pred CceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceE
Confidence 3789999999999999999987776542 457999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCcccchHHHHHHHHHHHhhccCcccccchhh
Q 004136 559 MIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSHRANIQSNLT 638 (771)
Q Consensus 559 ~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 638 (771)
+++++++..
T Consensus 147 i~~~~~~~~----------------------------------------------------------------------- 155 (294)
T 2rc8_A 147 ILVRTRGTE----------------------------------------------------------------------- 155 (294)
T ss_dssp EEEETTSCC-----------------------------------------------------------------------
T ss_pred EEEECCCCC-----------------------------------------------------------------------
Confidence 999987632
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhh----hCCceEEEecChHHHHHHHHhcCCCCCCc--ccC
Q 004136 639 RVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLK----SGNLKVGCVDDSFVKKYLEEVLGFRSGNI--VPF 712 (771)
Q Consensus 639 Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~----~~~~~~g~~~~s~~~~~l~~~~~~~~~~~--~~~ 712 (771)
|++++||. ..++++|+..++....++++........+ ..+
T Consensus 156 ----------------------------------i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~~~~~~~~i~~~~~ 201 (294)
T 2rc8_A 156 ----------------------------------LSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNV 201 (294)
T ss_dssp ----------------------------------CCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGGGCB
T ss_pred ----------------------------------cCChhhhhhcCcccCeEEEEEcCChHHHHHHHHHHHHHHHHHHhcC
Confidence 78888887 35899999999999999887411000112 245
Q ss_pred CCCHHHHHHHHHc--CCceEEEecchhHHHHHHh--cCCceeEee-eeeeceEEEEEecCCC
Q 004136 713 GNTEANYIQKFEN--NTIDSLFLERPYEKVFLDK--YCKKYTAIN-TYRFGGLGFVSNIIYS 769 (771)
Q Consensus 713 ~~~~~~~~~~v~~--~~~~a~i~~~~~~~~~~~~--~c~~l~~~~-~~~~~~~g~~~~k~s~ 769 (771)
.+ .++++++|++ |++||++.+...+.|++++ .|+ +++++ .+...+|+|+++|+++
T Consensus 202 ~~-~~~~~~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~k~~~ 261 (294)
T 2rc8_A 202 PA-TPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCK-LLTVGKPFAIEGYGIGLPPNSP 261 (294)
T ss_dssp SS-HHHHHHHHHSSSCCCSEEEEEHHHHHHHHHTCSSSC-EEECSCCEEEEEECCEECTTCT
T ss_pred CC-HHHHHHHHHhccCceeEEEecHHHHHHHHhhCCCCC-EEEcCCcccccceEEEecCCCH
Confidence 66 9999999999 9999999999999998876 476 88998 8889999999999986
No 42
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.84 E-value=9e-21 Score=192.73 Aligned_cols=203 Identities=18% Similarity=0.334 Sum_probs=165.6
Q ss_pred CCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecC---------CCChHHHH
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH---------DGVYDDLI 521 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~---------~~~~~~~i 521 (771)
++++|+|++...|| |.+.+.+... -+++.++.||++||++++++++|++++++.++. +++|.+++
T Consensus 2 ~~~~l~v~~~~~~P---~~~~~~~~~~---~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~ 75 (259)
T 3g3k_A 2 SNRSLIVTTILEEP---YVLFKKSDKP---LYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMV 75 (259)
T ss_dssp -CCCEEEEECCBTT---TBEECCCSSC---CCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHH
T ss_pred CCcEEEEEEecCCC---eEEEeecccc---cCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHH
Confidence 35789999987755 5565443100 011238999999999999999999988887764 45799999
Q ss_pred HHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccc
Q 004136 522 NGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQ 601 (771)
Q Consensus 522 ~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~ 601 (771)
.+|.+|++|++++++++|++|.+.++||.||+..+..++++++++
T Consensus 76 ~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~----------------------------------- 120 (259)
T 3g3k_A 76 RELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTP----------------------------------- 120 (259)
T ss_dssp HHHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSS-----------------------------------
T ss_pred HHHhcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCcc-----------------------------------
Confidence 999999999999999999999999999999999999999988763
Q ss_pred cCccCcCcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhh
Q 004136 602 SNPEFRGTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKS 681 (771)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~ 681 (771)
|++++||..
T Consensus 121 -----------------------------------------------------------------------i~~~~dL~g 129 (259)
T 3g3k_A 121 -----------------------------------------------------------------------IDSADDLAK 129 (259)
T ss_dssp -----------------------------------------------------------------------CCSHHHHHT
T ss_pred -----------------------------------------------------------------------ccCHHHhcc
Confidence 889999983
Q ss_pred C-CceEEEecChHHHHHHHHhcCCC-----------CCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCce
Q 004136 682 G-NLKVGCVDDSFVKKYLEEVLGFR-----------SGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKY 749 (771)
Q Consensus 682 ~-~~~~g~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l 749 (771)
. ++++|+..++....++.+. ... ...+..+.+ .++++++|.+|+ ||++.+...+.|++++.|+ +
T Consensus 130 ~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~-l 205 (259)
T 3g3k_A 130 QTKIEYGAVEDGATMTFFKRS-KISTYDKMWAFMSSRRQSVLVKS-NEEGIQRVLTSD-YAFLMESTTIEFVTQRNCN-L 205 (259)
T ss_dssp CSSSEEEEETTSHHHHHHHHC-CSHHHHHHHHHHHHTHHHHEESS-HHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTT-E
T ss_pred CCCceEEEecCcHHHHHHhhc-cchhHHHHHHHHHhcCCCcccCC-HHHHHHHHHhCC-eEEEechHHHHHHhcCCce-E
Confidence 3 5669988887777777652 111 112345677 999999999999 9999999999999988888 8
Q ss_pred eEee-eeeeceEEEEEecCCC
Q 004136 750 TAIN-TYRFGGLGFVSNIIYS 769 (771)
Q Consensus 750 ~~~~-~~~~~~~g~~~~k~s~ 769 (771)
++++ .+...+++++++|++|
T Consensus 206 ~~~~~~~~~~~~~~a~~k~~~ 226 (259)
T 3g3k_A 206 TQIGGLIDSKGYGVGTPMGSP 226 (259)
T ss_dssp EEESSCSSCEEECCEEETTCT
T ss_pred EEecccceeeeEEEEECCCCc
Confidence 8998 8888999999999987
No 43
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.84 E-value=8.7e-21 Score=190.83 Aligned_cols=197 Identities=11% Similarity=0.098 Sum_probs=157.1
Q ss_pred CCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccc
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTY 529 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~ 529 (771)
+.++|+||+ .+.|+||.+.++++ ++.||++||+++|+++| |++++++.. .|++++..|.+|++
T Consensus 7 ~~~tl~vg~--~~~~pP~~~~d~~G----------~~~G~~vdl~~~ia~~l~g~~~~~~~~----~~~~~~~~l~~g~~ 70 (243)
T 4gvo_A 7 KVQTITVGT--GTQFPNVCFLDENG----------KLTGYDVELVKEIDKRLPGYKFKFKTM----DFSNLLVSLGAGKV 70 (243)
T ss_dssp -CEEEEEEE--CSEETTTEEECTTS----------CEESHHHHHHHHHHHTCTTEEEEEEEC----CGGGHHHHHHTTSC
T ss_pred cCCeEEEEE--CCCCCCeEEECCCC----------cEEEhHHHHHHHHHHhccCCeEEEEEC----CHHHHHHHHHCCCC
Confidence 456799998 45678899887666 89999999999999998 888665543 49999999999999
Q ss_pred cEEEeeEeeeccceeeeecccceeeccEEEE-EecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcC
Q 004136 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMI-VPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRG 608 (771)
Q Consensus 530 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~-v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 608 (771)
|++++++++|++|.+.++||.|++.....++ +++....
T Consensus 71 D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~----------------------------------------- 109 (243)
T 4gvo_A 71 DIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNS----------------------------------------- 109 (243)
T ss_dssp SEECSCCBCCHHHHHHSEECSSCCEECCEEEEEETTCCS-----------------------------------------
T ss_pred CEecccCCCCHHHhhhhhhhhhhcccccceEEEeccccc-----------------------------------------
Confidence 9999999999999999999999776555544 4444332
Q ss_pred cccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEE
Q 004136 609 TLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGC 688 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~ 688 (771)
+++++||. |.++|+
T Consensus 110 ----------------------------------------------------------------~~~~~dL~--g~~v~v 123 (243)
T 4gvo_A 110 ----------------------------------------------------------------INSTKDLA--GKRVIT 123 (243)
T ss_dssp ----------------------------------------------------------------CSSGGGGT--TCEEEE
T ss_pred ----------------------------------------------------------------cCchHHhc--CCeEEE
Confidence 89999998 999999
Q ss_pred ecChHHHHHHHHhc--CCCCC-CcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee-eeeeceEEEEE
Q 004136 689 VDDSFVKKYLEEVL--GFRSG-NIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN-TYRFGGLGFVS 764 (771)
Q Consensus 689 ~~~s~~~~~l~~~~--~~~~~-~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~-~~~~~~~g~~~ 764 (771)
..++....+++... ..... ....+.+ .++++++|.+|++||++.+...+.++.++....+.+++ .+....+++++
T Consensus 124 ~~gs~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (243)
T 4gvo_A 124 SATSNGALVLKKINEEQGNNFEIAYEGQG-SNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFML 202 (243)
T ss_dssp CTTCHHHHHHHHHHHHTTSCSEEEECCSG-GGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEE
T ss_pred ecCchHHHHHHHHHHhccccceeccccCC-hHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEE
Confidence 99988777765521 11111 2224555 88899999999999999999999988877654478888 88899999999
Q ss_pred ecCCCCC
Q 004136 765 NIIYSHL 771 (771)
Q Consensus 765 ~k~s~~l 771 (771)
+|+++.|
T Consensus 203 ~k~~~~l 209 (243)
T 4gvo_A 203 GKDETKL 209 (243)
T ss_dssp CTTCHHH
T ss_pred eCCCHHH
Confidence 9998753
No 44
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.82 E-value=9.4e-21 Score=195.24 Aligned_cols=174 Identities=20% Similarity=0.368 Sum_probs=142.0
Q ss_pred ccccchHHHHHHHHHHCCCcccEEEecC-------CCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEE
Q 004136 486 RYDGFSIELFRLVVDHLNYDLPYEFVPH-------DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFS 558 (771)
Q Consensus 486 ~~~G~~~~l~~~~a~~l~f~~~~~~~~~-------~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~ 558 (771)
++.|+++||++++++++|++++++..+. +++|++++.+|.+|++|++++++++|.+|.+.++||.||+.++..
T Consensus 56 ~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~ 135 (284)
T 2a5s_A 56 CCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGIS 135 (284)
T ss_dssp EEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEE
T ss_pred eeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEeccCchhcCEE
Confidence 6899999999999999999977776542 458999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCcccchHHHHHHHHHHHhhccCcccccchhh
Q 004136 559 MIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSHRANIQSNLT 638 (771)
Q Consensus 559 ~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 638 (771)
++++++..
T Consensus 136 ~~~~~~~~------------------------------------------------------------------------ 143 (284)
T 2a5s_A 136 VMVSRGTQ------------------------------------------------------------------------ 143 (284)
T ss_dssp EEEETTCC------------------------------------------------------------------------
T ss_pred EEEECCcc------------------------------------------------------------------------
Confidence 99998764
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhh-------CCceEEEecChHHHHHHHHhcCCCC--CCc
Q 004136 639 RVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKS-------GNLKVGCVDDSFVKKYLEEVLGFRS--GNI 709 (771)
Q Consensus 639 Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~-------~~~~~g~~~~s~~~~~l~~~~~~~~--~~~ 709 (771)
+++++||.. .++++|+..++.....+.+. ++. .++
T Consensus 144 ----------------------------------~~~~~dl~~~~~~~l~~~~~vg~v~~~s~~~~l~~~--~~~~~~~i 187 (284)
T 2a5s_A 144 ----------------------------------VTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNN--YPYMHQYM 187 (284)
T ss_dssp ----------------------------------CCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHTT--CHHHHHHH
T ss_pred ----------------------------------cccccccccCChhHcCCCceEEEEeCCchHHHHHHH--HHHHHHHH
Confidence 455555542 26789976544445555442 221 135
Q ss_pred ccC--CCCHHHHHHHHHcCCceEEEecchhHHHHHHhc--CCceeEe--e-eeeeceEEEEEecCCC
Q 004136 710 VPF--GNTEANYIQKFENNTIDSLFLERPYEKVFLDKY--CKKYTAI--N-TYRFGGLGFVSNIIYS 769 (771)
Q Consensus 710 ~~~--~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~--c~~l~~~--~-~~~~~~~g~~~~k~s~ 769 (771)
..+ .+ .++++++|.+|++||++.+...+.|+++++ |+ +.++ + .+...+|+++++|+++
T Consensus 188 ~~~~~~~-~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~a~~k~~~ 252 (284)
T 2a5s_A 188 TRFNQRG-VEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCK-LVTIGSGYIFATTGYGIALQKGSP 252 (284)
T ss_dssp GGGCCSS-HHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSC-EEEEECCCGGGCEEECCEEETTCT
T ss_pred HhccCCC-HHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCC-EEEeCCccccccCceEEEecCCCH
Confidence 555 56 999999999999999999999999998875 76 7776 3 6778899999999985
No 45
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.81 E-value=1.1e-19 Score=182.93 Aligned_cols=197 Identities=19% Similarity=0.325 Sum_probs=169.5
Q ss_pred CCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhccccc
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D 530 (771)
+.++|+|++. +.++||.+.+.++ ++.|+++||++.+++++|++++++.. .|..++..|.+|++|
T Consensus 3 ~~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D 66 (245)
T 3k4u_A 3 LRGELRVGLE--PGYLPFEMKDKKG----------NVIGFDVDLAREMAKAMGVKLKLVPT----SWDGLIPGLVTEKFD 66 (245)
T ss_dssp CCSEEEEEEC--TTSTTTCEEETTT----------EEESHHHHHHHHHHHHHTCEEEEEEC----CGGGHHHHHHTTSCS
T ss_pred cCCeEEEEEC--CCcCCeeEECCCC----------CCccchHHHHHHHHHHhCCeEEEEEc----cHHHHHHHHhCCCcC
Confidence 4578999996 4566777776655 89999999999999999999666543 599999999999999
Q ss_pred EEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCcc
Q 004136 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTL 610 (771)
Q Consensus 531 ~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (771)
++++++..+.+|.+.+.||.||+.....+++++.+..
T Consensus 67 ~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~------------------------------------------- 103 (245)
T 3k4u_A 67 IIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEK------------------------------------------- 103 (245)
T ss_dssp EECSSCBCCHHHHTTSEECSCSEEECEEEEEETTTTT-------------------------------------------
T ss_pred EEEecCcCCHHHHhhcCcchhhheeceEEEEECCccc-------------------------------------------
Confidence 9988899999999999999999999999999988532
Q ss_pred cchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEec
Q 004136 611 KDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCVD 690 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~~ 690 (771)
.+++++||.+.+.++|+..
T Consensus 104 -------------------------------------------------------------~i~~~~dL~~~g~~i~v~~ 122 (245)
T 3k4u_A 104 -------------------------------------------------------------GVKSYKDLDKPELTLVTKF 122 (245)
T ss_dssp -------------------------------------------------------------TCCSGGGGCCSSCEEEEET
T ss_pred -------------------------------------------------------------ccCCHHHhccCCcEEEEeC
Confidence 1899999998899999999
Q ss_pred ChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcC-CceeEee-eeeeceEEEEEecCC
Q 004136 691 DSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYC-KKYTAIN-TYRFGGLGFVSNIIY 768 (771)
Q Consensus 691 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c-~~l~~~~-~~~~~~~g~~~~k~s 768 (771)
++....++.+. .+..++..+.+ .++++++|.+|++|+++.+...+.+++++.. ..+..++ .+...+++++++|++
T Consensus 123 g~~~~~~l~~~--~~~~~~~~~~~-~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 199 (245)
T 3k4u_A 123 GVSAEYAAKRL--FKNAKLKTYDT-EAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGD 199 (245)
T ss_dssp TSHHHHHHHHH--CSSSEEEEESS-HHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTC
T ss_pred CcHHHHHHHhh--CCcCCEEEeCC-HHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCC
Confidence 99999998875 45567778888 9999999999999999999999998877764 3477777 788899999999998
Q ss_pred CC
Q 004136 769 SH 770 (771)
Q Consensus 769 ~~ 770 (771)
|.
T Consensus 200 ~~ 201 (245)
T 3k4u_A 200 PD 201 (245)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 46
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.81 E-value=1.3e-19 Score=181.52 Aligned_cols=191 Identities=19% Similarity=0.311 Sum_probs=165.3
Q ss_pred CceEEEeccCCCccceEEe-ccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccE
Q 004136 453 EPMRIGVPTRTFFEKFVVI-KDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDA 531 (771)
Q Consensus 453 ~~~~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~ 531 (771)
++|+|++.. .++||.+. +.++ ++.|+++||++.+++++|+++++... .|..++..+.+|++|+
T Consensus 3 ~~l~v~~~~--~~~P~~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~ 66 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWSGNNS----------SLYGFDIDLMQEICRRLHATCTFEAY----IFDDLFPALKNREVDL 66 (237)
T ss_dssp CEEEEEEES--EETTTEECCCTTS----------CCBSHHHHHHHHHHHHTTCEEEEEEE----CGGGHHHHHHTTSSSE
T ss_pred ceEEEEECC--CCCCeEEEeCCCC----------CEeeehHHHHHHHHHHhCCceEEEEc----CHHHHHHHHhCCCCCE
Confidence 578999863 46788886 5444 78999999999999999999666554 4899999999999999
Q ss_pred EEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCccc
Q 004136 532 AVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTLK 611 (771)
Q Consensus 532 ~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (771)
++++++.+.+|.+.++||.||+.....+++++.+.
T Consensus 67 ~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~--------------------------------------------- 101 (237)
T 3kzg_A 67 VIASMIITDERKKHFIFSLPYMESNSQYITTVDSK--------------------------------------------- 101 (237)
T ss_dssp ECSSCBCCTTGGGTCEECCCSBCCEEEEEEETTCS---------------------------------------------
T ss_pred EEEccccChhHhccceeeeeeeecceEEEEECCCC---------------------------------------------
Confidence 99999999999999999999999999999988764
Q ss_pred chHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEecC
Q 004136 612 DQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCVDD 691 (771)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~~~ 691 (771)
+++++||. |.+||+..+
T Consensus 102 -------------------------------------------------------------~~~~~dL~--g~~i~~~~g 118 (237)
T 3kzg_A 102 -------------------------------------------------------------ISTFDDLH--GKKIGVRKG 118 (237)
T ss_dssp -------------------------------------------------------------CCSGGGGT--TCEEEEETT
T ss_pred -------------------------------------------------------------CCCHHHhC--CCEEEEecC
Confidence 78999998 899999999
Q ss_pred hHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcC------C-ceeEee-ee-eeceEEE
Q 004136 692 SFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYC------K-KYTAIN-TY-RFGGLGF 762 (771)
Q Consensus 692 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c------~-~l~~~~-~~-~~~~~g~ 762 (771)
+....++.+. .+..++..+.+ .++++++|.+|++|+++.+...+.++++++. . .+++++ .+ ...++++
T Consensus 119 ~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 195 (237)
T 3kzg_A 119 TPYARQVLSE--NRNNQVIFYEL-IQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSI 195 (237)
T ss_dssp STHHHHHHHT--CSSCEEEEESS-HHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCC
T ss_pred CHHHHHHHHh--CCCCcEEEeCC-HHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEE
Confidence 9877777764 44467778888 9999999999999999999999999998866 2 488888 78 8889999
Q ss_pred EEecCCCC
Q 004136 763 VSNIIYSH 770 (771)
Q Consensus 763 ~~~k~s~~ 770 (771)
+++|+++.
T Consensus 196 ~~~k~~~~ 203 (237)
T 3kzg_A 196 MANPDQFV 203 (237)
T ss_dssp EECGGGHH
T ss_pred EEcCCCHH
Confidence 99998654
No 47
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.81 E-value=8.2e-19 Score=177.05 Aligned_cols=193 Identities=17% Similarity=0.298 Sum_probs=166.0
Q ss_pred CCCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccc
Q 004136 450 SNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTY 529 (771)
Q Consensus 450 ~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~ 529 (771)
...++|+|++. +.++||.+. +++ ++.|+++||++.+++++|++++++.. .|..++..+.+|++
T Consensus 21 ~~~~~l~v~~~--~~~~P~~~~-~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~ 83 (249)
T 4f3p_A 21 SMAKELVVGTD--TSFMPFEFK-QGD----------KYVGFDLDLWAEIAKGAGWTYKIQPM----DFAGLIPALQTQNI 83 (249)
T ss_dssp ---CCEEEEEE--SCBTTTBEE-ETT----------EEESHHHHHHHHHHHHHTCCEEEEEE----CGGGHHHHHHTTSC
T ss_pred ccCceEEEEeC--CCCCCeEEe-cCC----------eEEEEhHHHHHHHHHHcCCceEEEec----CHHHHHHHHHCCCC
Confidence 46678999996 345566665 444 78999999999999999999666654 48999999999999
Q ss_pred cEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCc
Q 004136 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGT 609 (771)
Q Consensus 530 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (771)
|++++++..+.+|.+.++||.|++.....+++++.+..
T Consensus 84 D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~------------------------------------------ 121 (249)
T 4f3p_A 84 DVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTT------------------------------------------ 121 (249)
T ss_dssp SEEEEEEECCHHHHTTEEECSCCEEEEEEEEEETTCCS------------------------------------------
T ss_pred CEEEeccccCHHHHcCcceecceeeccEEEEEECCCCC------------------------------------------
Confidence 99998999999999999999999999999999887643
Q ss_pred ccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEe
Q 004136 610 LKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCV 689 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~ 689 (771)
+++++||. |.+||+.
T Consensus 122 ---------------------------------------------------------------i~~~~dL~--g~~i~v~ 136 (249)
T 4f3p_A 122 ---------------------------------------------------------------IKSIDDLN--GKVIAAK 136 (249)
T ss_dssp ---------------------------------------------------------------CCSSGGGT--TSEEEEE
T ss_pred ---------------------------------------------------------------cCChHHhC--CCEEEEe
Confidence 89999998 8999999
Q ss_pred cChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcC-CceeEee-eeeeceEEEEEecC
Q 004136 690 DDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYC-KKYTAIN-TYRFGGLGFVSNII 767 (771)
Q Consensus 690 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c-~~l~~~~-~~~~~~~g~~~~k~ 767 (771)
.++....++.+. .+..++..+.+ .++++++|.+|++|+++.+...+.+++++.. ..+.+++ .+....++++++|+
T Consensus 137 ~g~~~~~~l~~~--~~~~~~~~~~~-~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~ 213 (249)
T 4f3p_A 137 TGTATIDWIKAH--LKPKEIRQFPN-IDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKG 213 (249)
T ss_dssp TTSHHHHHHHHH--CCCSEEEEESS-HHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETT
T ss_pred CCChHHHHHHhc--CCCceEEEcCC-HHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCC
Confidence 999999998875 45567778888 9999999999999999999999999988764 3588888 88899999999999
Q ss_pred CC
Q 004136 768 YS 769 (771)
Q Consensus 768 s~ 769 (771)
++
T Consensus 214 ~~ 215 (249)
T 4f3p_A 214 SP 215 (249)
T ss_dssp CT
T ss_pred ch
Confidence 86
No 48
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.80 E-value=5.6e-19 Score=180.29 Aligned_cols=195 Identities=16% Similarity=0.299 Sum_probs=166.9
Q ss_pred CCCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccc
Q 004136 450 SNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTY 529 (771)
Q Consensus 450 ~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~ 529 (771)
.+.++|+|++.. .++||.+.+.++ ++.|+++||++.+++++|+++++...+ +|..++.++.+|++
T Consensus 29 ~~~~~l~v~~~~--~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~lg~~~~~~~~~---~~~~~~~~l~~G~~ 93 (267)
T 3mpk_A 29 ADHPVVKVAVLN--LFAPFTLFRTDE----------QFGGISAAVLQLLQLRTGLDFEIIGVD---TVEELIAKLRSGEA 93 (267)
T ss_dssp HHCSEEEEEEET--EETTTEECCTTC----------CCBSHHHHHHHHHHHHHCCEEEEEEES---SHHHHHHHHHHTSC
T ss_pred HhCCcEEEEeCC--CCCCeEEECCCC----------cEeeeHHHHHHHHHHHHCCeEEEEecC---CHHHHHHHHHCCCc
Confidence 456789999953 467888865555 799999999999999999996666443 59999999999999
Q ss_pred cEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCc
Q 004136 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGT 609 (771)
Q Consensus 530 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (771)
|++. +++.+.+|.+.+.||.||+.....+++++....
T Consensus 94 D~~~-~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~------------------------------------------ 130 (267)
T 3mpk_A 94 DMAG-ALFVNSARESFLSFSRPYVRNGMVIVTRQDPDA------------------------------------------ 130 (267)
T ss_dssp SEEE-EEECCGGGTTTEEECSCSEEECEEEEEESSTTS------------------------------------------
T ss_pred cEEe-cccCChhhhcceEechhhccCceEEEEECCCCC------------------------------------------
Confidence 9976 799999999999999999999999999887643
Q ss_pred ccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEe
Q 004136 610 LKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCV 689 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~ 689 (771)
+++++||. |.+||+.
T Consensus 131 ---------------------------------------------------------------i~~~~dL~--g~~i~v~ 145 (267)
T 3mpk_A 131 ---------------------------------------------------------------PVDADHLD--GRTVALV 145 (267)
T ss_dssp ---------------------------------------------------------------CSSGGGCT--TCEEEEE
T ss_pred ---------------------------------------------------------------CCCHHHHC--CCEEEEe
Confidence 88999998 9999999
Q ss_pred cChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhc-CCceeEee--eeeeceEEEEEec
Q 004136 690 DDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKY-CKKYTAIN--TYRFGGLGFVSNI 766 (771)
Q Consensus 690 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~-c~~l~~~~--~~~~~~~g~~~~k 766 (771)
.++....++++. .+..++..+.+ .++++++|.+|++|+++.+...+.+++++. .+.+++.+ ......++++++|
T Consensus 146 ~g~~~~~~l~~~--~~~~~~~~~~~-~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 222 (267)
T 3mpk_A 146 RNSAAIPLLQRR--YPQAKVVTADN-PSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTR 222 (267)
T ss_dssp TTCTHHHHHHHH--CTTSEEEEESS-HHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEET
T ss_pred CCchhHHHHHHh--CCCcEEEEeCC-HHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcC
Confidence 999999998875 45667788888 999999999999999999999999988874 33488887 3357899999999
Q ss_pred CCCC
Q 004136 767 IYSH 770 (771)
Q Consensus 767 ~s~~ 770 (771)
+++.
T Consensus 223 ~~~~ 226 (267)
T 3mpk_A 223 GQTE 226 (267)
T ss_dssp TCHH
T ss_pred CCHH
Confidence 9864
No 49
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.80 E-value=1.4e-18 Score=176.54 Aligned_cols=195 Identities=16% Similarity=0.261 Sum_probs=163.4
Q ss_pred CCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhccccc
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D 530 (771)
..++++|++. +.++||.+.+.++ ++.|+++|+++.+++++|++++++ .. +|..++..+.+|++|
T Consensus 27 ~~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~--~~--~~~~~~~~l~~g~~D 90 (259)
T 4dz1_A 27 EGRTLNVAVS--PASPPMLFKSADG----------KLQGIDLELFSSYCQSRHCKLNIT--EY--AWDGMLGAVASGQAD 90 (259)
T ss_dssp TTCEEEEEEC--CCBTTTBEECTTC----------CEESHHHHHHHHHHHHHTCEEEEE--EC--CHHHHHHHHHHTSSS
T ss_pred cCCeEEEEEC--CCCCCeEEECCCC----------CEEEeHHHHHHHHHHHhCCeEEEE--Ec--CHHHHHHHHhCCCCC
Confidence 4578999985 4566777766555 799999999999999999985554 43 599999999999999
Q ss_pred EEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCcc
Q 004136 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTL 610 (771)
Q Consensus 531 ~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (771)
+++++++.|.+|.+.++||.||+..+..+++++++..
T Consensus 91 ~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~------------------------------------------- 127 (259)
T 4dz1_A 91 VAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKI------------------------------------------- 127 (259)
T ss_dssp EEEEEEECCHHHHTTEEECCCSEEEEEEEEEETTSCC-------------------------------------------
T ss_pred EEEECCcCCHHHhhccccccchhhCceEEEEEcCCCC-------------------------------------------
Confidence 9999999999999999999999999999999887642
Q ss_pred cchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEec
Q 004136 611 KDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCVD 690 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~~ 690 (771)
.|++++||. |.+||+..
T Consensus 128 -------------------------------------------------------------~i~~~~dL~--g~~v~v~~ 144 (259)
T 4dz1_A 128 -------------------------------------------------------------TLNNLNELN--KYSIGYPR 144 (259)
T ss_dssp -------------------------------------------------------------CCCSGGGGG--GSCEEEET
T ss_pred -------------------------------------------------------------CCCCHHHhC--CCEEEEeC
Confidence 189999999 89999999
Q ss_pred ChHHHHHHHHhcCC---CC-CCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee-eeeeceEEEEEe
Q 004136 691 DSFVKKYLEEVLGF---RS-GNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN-TYRFGGLGFVSN 765 (771)
Q Consensus 691 ~s~~~~~l~~~~~~---~~-~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~-~~~~~~~g~~~~ 765 (771)
++....++++.... .. .++..+.+ .++++++|.+|++|+++.+...+.+++++....+.... .....+++++++
T Consensus 145 g~~~~~~l~~~~~~~g~~~~~~~~~~~~-~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (259)
T 4dz1_A 145 GMAYSDLIKNDLEPKGYYSLSKVKLYPT-YNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFK 223 (259)
T ss_dssp TSTHHHHHHHHTGGGTSCCGGGCEEESS-HHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEE
T ss_pred CcHHHHHHHHhcccccccccceeEecCC-HHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEe
Confidence 99998888774211 11 46667887 99999999999999999999998887776544477777 777889999999
Q ss_pred cCC
Q 004136 766 IIY 768 (771)
Q Consensus 766 k~s 768 (771)
|++
T Consensus 224 k~~ 226 (259)
T 4dz1_A 224 KGS 226 (259)
T ss_dssp TTC
T ss_pred CCh
Confidence 987
No 50
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.80 E-value=1.8e-19 Score=180.63 Aligned_cols=199 Identities=13% Similarity=0.222 Sum_probs=168.7
Q ss_pred ccCCCCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhc
Q 004136 447 AMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYD 526 (771)
Q Consensus 447 ~~~~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~ 526 (771)
....+.++|+|++. +.++||.+.+.++ ++.|+++||++.+++++|+++++... +|..++..|.+
T Consensus 9 ~~i~~~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~ 72 (239)
T 3kbr_A 9 DRILESGVLRVATT--GDYKPFSYRTEEG----------GYAGFDVDMAQRLAESLGAKLVVVPT----SWPNLMRDFAD 72 (239)
T ss_dssp HHHHHHTEEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHTTCEEEEEEC----CTTTHHHHHHT
T ss_pred HHHhhCCeEEEEEC--CCCCCeeEECCCC----------CEEeehHHHHHHHHHHHCCceEEEEe----CHHHHHHHHHC
Confidence 33345678999995 3567788876555 79999999999999999998655543 58999999999
Q ss_pred ccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccC
Q 004136 527 KTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEF 606 (771)
Q Consensus 527 ~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 606 (771)
|++|+++.++..|.+|.+.++||.||+..+..+++++.+...
T Consensus 73 g~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~-------------------------------------- 114 (239)
T 3kbr_A 73 DRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEAR-------------------------------------- 114 (239)
T ss_dssp TCCSEECSSCBCCHHHHTTCEECSCSEEECEEEEEEGGGGGG--------------------------------------
T ss_pred CCcCEEEeCCcCCHHHcCccccchHHhccCcEEEEECCcccc--------------------------------------
Confidence 999999888999999999999999999999999998876321
Q ss_pred cCcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceE
Q 004136 607 RGTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKV 686 (771)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~ 686 (771)
+++++||...++++
T Consensus 115 ------------------------------------------------------------------i~~~~dL~~~g~~v 128 (239)
T 3kbr_A 115 ------------------------------------------------------------------FQTLEQIDQPGVTA 128 (239)
T ss_dssp ------------------------------------------------------------------GSSHHHHSSTTCEE
T ss_pred ------------------------------------------------------------------cCCHHHhcCCCcEE
Confidence 89999999888999
Q ss_pred EEecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee---eeeeceEEEE
Q 004136 687 GCVDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN---TYRFGGLGFV 763 (771)
Q Consensus 687 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~---~~~~~~~g~~ 763 (771)
|+..++....++++. .+..++..+.+ .++++++|.+|++|+++.+...+.++++++.+ +.++. .+...+++++
T Consensus 129 ~~~~g~~~~~~l~~~--~~~~~~~~~~~-~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 204 (239)
T 3kbr_A 129 IVNPGGTNEKFARAN--LKKARILVHPD-NVTIFQQIVDGKADLMMTDAIEARLQSRLHPE-LCAVHPQQPFDFAEKAYL 204 (239)
T ss_dssp EECTTSHHHHHHHHH--CSSSEEEECCC-TTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-EEECCCC-CCCCEEECCE
T ss_pred EEcCCCcHHHHHHHh--CCCCceEEeCC-HHHHHHHHHcCCcCEEEEchHHHHHHHHhCCC-cEEecCCCCccccceEEE
Confidence 999999999998875 45567778888 99999999999999999999999999998876 66554 5778899999
Q ss_pred EecCCCC
Q 004136 764 SNIIYSH 770 (771)
Q Consensus 764 ~~k~s~~ 770 (771)
++| ++.
T Consensus 205 ~~k-~~~ 210 (239)
T 3kbr_A 205 LPR-DEA 210 (239)
T ss_dssp ECS-CHH
T ss_pred EcC-CHH
Confidence 999 543
No 51
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.79 E-value=8.3e-19 Score=178.74 Aligned_cols=201 Identities=20% Similarity=0.327 Sum_probs=157.5
Q ss_pred CCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecC--------CCChHHHHH
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH--------DGVYDDLIN 522 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~--------~~~~~~~i~ 522 (771)
++++|+|++...|| |.+.+.+..+ ..| ++.|+++||++++++++|++++++..+. +++|++++.
T Consensus 1 ~~~~l~v~~~~~pP---~~~~~~~~~g-~~g----~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~ 72 (265)
T 2v3u_A 1 GGVVLRVVTVLEEP---FVMVSENVLG-KPK----KYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVG 72 (265)
T ss_dssp CCCEEEEEECCBTT---TBEEECCSTT-CCC----EEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHH
T ss_pred CCeEEEEEEeccCC---eEEEecCCCC-Ccc----eEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHH
Confidence 46789999987654 5665554100 112 8999999999999999999977765542 357999999
Q ss_pred HHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhcccc
Q 004136 523 GVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQS 602 (771)
Q Consensus 523 ~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~ 602 (771)
.|.+|++|++++++++|.+|.+.++||.||+..+..++++++++
T Consensus 73 ~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------ 116 (265)
T 2v3u_A 73 ELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTS------------------------------------ 116 (265)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCC------------------------------------
T ss_pred HHHcCCcCeEEeeeEeehhhhccccccceeeeccEEEEEECCCC------------------------------------
Confidence 99999999999889999999999999999999999999988663
Q ss_pred CccCcCcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhh-
Q 004136 603 NPEFRGTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKS- 681 (771)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~- 681 (771)
|++++||.+
T Consensus 117 ----------------------------------------------------------------------i~~~~dL~~~ 126 (265)
T 2v3u_A 117 ----------------------------------------------------------------------IQSLQDLSKQ 126 (265)
T ss_dssp ----------------------------------------------------------------------CCSHHHHHTC
T ss_pred ----------------------------------------------------------------------ccchhhhhhh
Confidence 889999982
Q ss_pred CCceEEEecChHHHHHHHHhcCCCC------------------CCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHH
Q 004136 682 GNLKVGCVDDSFVKKYLEEVLGFRS------------------GNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLD 743 (771)
Q Consensus 682 ~~~~~g~~~~s~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~ 743 (771)
-++..|+..++....++++. +... .++..+.+ .++++++|.+|++ |++.+...+.++++
T Consensus 127 v~v~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~l~~G~~-a~~~~~~~~~~~~~ 203 (265)
T 2v3u_A 127 TDIPYGTVLDSAVYQHVRMK-GLNPFERDSMYSQMWRMINRSNGSENNVLE-SQAGIQKVKYGNY-AFVWDAAVLEYVAI 203 (265)
T ss_dssp SSSCEECBTTSHHHHHHHHH-HTCTTCSCTHHHHHHHHHCC-----CCBSS-HHHHHHHHHHSSC-EEEEEHHHHHHHHH
T ss_pred hcEEEEEeccHHHHHHHHhc-CCCcccccHHHHHHHHHHHhhcCcccccCC-HHHHHHHHHcCCE-EEEEcchHHHHHHh
Confidence 24566666667777777653 1111 12345667 9999999999999 99999999998876
Q ss_pred hc--CCceeEee-eeeeceEEEEEecCCC
Q 004136 744 KY--CKKYTAIN-TYRFGGLGFVSNIIYS 769 (771)
Q Consensus 744 ~~--c~~l~~~~-~~~~~~~g~~~~k~s~ 769 (771)
++ |+ +++++ .+...+++++++|+++
T Consensus 204 ~~~~~~-l~~~~~~~~~~~~~~~~~k~~~ 231 (265)
T 2v3u_A 204 NDPDCS-FYTVGNTVADRGYGIALQHGSP 231 (265)
T ss_dssp HCTTCC-EEEEC---CCEEECCEEETTCT
T ss_pred cCCCcc-EEEeccccCCcceEEEEeCCCc
Confidence 54 66 88888 8888899999999987
No 52
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.79 E-value=4.4e-19 Score=176.96 Aligned_cols=186 Identities=20% Similarity=0.298 Sum_probs=156.8
Q ss_pred CCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhccccc
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D 530 (771)
..++|+|++. +.++||.+.+.++ ++.|+++||++++++++|++++++.. +|.+++..|.+|++|
T Consensus 3 ~a~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D 66 (232)
T 3i6v_A 3 LADTVRMGTE--GAYPPYNFINDAG----------EVDGFERELGDELCKRAGLTCEWVKN----DWDSIIPNLVSGNYD 66 (232)
T ss_dssp ---CEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHTCCEEEEEC----CGGGHHHHHHTTSCS
T ss_pred CCCEEEEEEC--CCCCCeeEECCCC----------CEeeehHHHHHHHHHHcCCceEEEEC----CHHHHHHHHHCCCCC
Confidence 3568999985 4567788876555 89999999999999999999665543 599999999999999
Q ss_pred EEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCcc
Q 004136 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTL 610 (771)
Q Consensus 531 ~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (771)
+++++++.|.+|.+.++||.||+..+..+++++.+
T Consensus 67 ~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------------- 101 (232)
T 3i6v_A 67 TIIAGMSITDERDEVIDFTQNYIPPTASSYVATSD--------------------------------------------- 101 (232)
T ss_dssp EECSSCBCCHHHHTTSEEEEEEECCCEEEEEESST---------------------------------------------
T ss_pred EEEeCCcCCHHHHhhcCcccccccCCeEEEEECCC---------------------------------------------
Confidence 99999999999999999999999999999987644
Q ss_pred cchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEec
Q 004136 611 KDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCVD 690 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~~ 690 (771)
++||. | ++|+..
T Consensus 102 -----------------------------------------------------------------~~dL~--g-~igv~~ 113 (232)
T 3i6v_A 102 -----------------------------------------------------------------GADLS--G-IVAAQT 113 (232)
T ss_dssp -----------------------------------------------------------------TCCTT--S-EEEEET
T ss_pred -----------------------------------------------------------------hHHhC--C-CEEEec
Confidence 34565 8 999999
Q ss_pred ChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee--eeeeceEEEEEecCC
Q 004136 691 DSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN--TYRFGGLGFVSNIIY 768 (771)
Q Consensus 691 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~--~~~~~~~g~~~~k~s 768 (771)
++....++++. ..++..+.+ .++++++|.+|++|+++.+...+.+++++...++.+++ .+...+++++++|++
T Consensus 114 g~~~~~~l~~~----~~~~~~~~~-~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 188 (232)
T 3i6v_A 114 ATIQAGYIAES----GATLVEFAT-PEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESD 188 (232)
T ss_dssp TSHHHHHHHHS----SSEEEEESS-HHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTC
T ss_pred CchHHHHHHhc----CCeEEEeCC-HHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCC
Confidence 99999999873 456777888 99999999999999999999999999888733377777 466789999999987
Q ss_pred CC
Q 004136 769 SH 770 (771)
Q Consensus 769 ~~ 770 (771)
+.
T Consensus 189 ~~ 190 (232)
T 3i6v_A 189 GE 190 (232)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 53
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.79 E-value=7.7e-19 Score=176.34 Aligned_cols=190 Identities=17% Similarity=0.243 Sum_probs=164.5
Q ss_pred CCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhccccc
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D 530 (771)
+.++|+|++ .+.++||.+.+.++ ++.|+++||++.+++++|+++++. .. +|.+++..|.+|++|
T Consensus 9 ~~~~l~v~~--~~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~--~~--~~~~~~~~l~~g~~D 72 (242)
T 3del_B 9 NSEKFIVGT--NATYPPFEFVDKRG----------EVVGFDIDLAREISNKLGKTLDVR--EF--SFDALILNLKQHRID 72 (242)
T ss_dssp --CEEEEEE--CSCBTTTBEECTTS----------CEESHHHHHHHHHHHHHTCEEEEE--EC--CGGGHHHHHHTTSSS
T ss_pred cCCcEEEEe--CCCCCCeeEECCCC----------CEEEeeHHHHHHHHHHcCCceEEE--Ec--CHHHHHHHHhCCCcC
Confidence 457899999 44567788875555 799999999999999999885554 43 599999999999999
Q ss_pred EEEeeEeeeccceeeeeccccee--eccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcC
Q 004136 531 AAVGDLTILGNRTEYVEFTQPYA--ESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRG 608 (771)
Q Consensus 531 ~~~~~~~~t~~r~~~~~fs~p~~--~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 608 (771)
++++++..+.+|.+.++| .||+ ..+..+++++...
T Consensus 73 ~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~------------------------------------------ 109 (242)
T 3del_B 73 AVITGMSITPSRLKEILM-IPYYGEEIKHLVLVFKGEN------------------------------------------ 109 (242)
T ss_dssp EECSSBBCCHHHHTTEEE-EEEEEEEESEEEEEEESCC------------------------------------------
T ss_pred EEEecCcCCHHHHhcccc-eeeeecCCceEEEEeCCCC------------------------------------------
Confidence 998889999999999999 9999 8899999988742
Q ss_pred cccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEE
Q 004136 609 TLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGC 688 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~ 688 (771)
+++++||. |.+||+
T Consensus 110 ----------------------------------------------------------------i~~~~dL~--g~~i~v 123 (242)
T 3del_B 110 ----------------------------------------------------------------KHPLPLTQ--YRSVAV 123 (242)
T ss_dssp ----------------------------------------------------------------SCCCCGGG--SSCEEE
T ss_pred ----------------------------------------------------------------CCCHHHhC--CCEEEE
Confidence 88999998 899999
Q ss_pred ecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee-eeeece----EEEE
Q 004136 689 VDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN-TYRFGG----LGFV 763 (771)
Q Consensus 689 ~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~-~~~~~~----~g~~ 763 (771)
..++....++.+ .+..++..+.+ .++++++|.+|++|+++.+...+.++++++.+ +++++ .+.... ++++
T Consensus 124 ~~g~~~~~~l~~---~~~~~~~~~~~-~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 198 (242)
T 3del_B 124 QTGTYQEAYLQS---LSEVHIRSFDS-TLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPA-LSTATIDLPEDQWVLGYGIG 198 (242)
T ss_dssp ETTSHHHHHHHH---STTCCEEEESS-HHHHHHHHHTTSSSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCEEEEEEE
T ss_pred EcCcHHHHHHHh---CCCceEEEECC-HHHHHHHHHcCCCCEEEecHHHHHHHHHhCCC-eEEecCccCcccccceEEEE
Confidence 999999999887 55667888888 99999999999999999999999999998887 88888 777777 9999
Q ss_pred EecCCCC
Q 004136 764 SNIIYSH 770 (771)
Q Consensus 764 ~~k~s~~ 770 (771)
++|+++.
T Consensus 199 ~~k~~~~ 205 (242)
T 3del_B 199 VASDRPA 205 (242)
T ss_dssp EETTCHH
T ss_pred EeCCCHH
Confidence 9999764
No 54
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.78 E-value=6.6e-19 Score=179.89 Aligned_cols=196 Identities=16% Similarity=0.295 Sum_probs=166.2
Q ss_pred CCCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccc
Q 004136 450 SNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTY 529 (771)
Q Consensus 450 ~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~ 529 (771)
.+.++|+|++.. .++||.+.++++ .+.|+++||++.+++++|+++++... .|..++..|.+|++
T Consensus 18 ~~~~~l~v~~~~--~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~ 81 (268)
T 3hv1_A 18 TKEKKIKIGFDA--TFVPMGYEEKDG----------SYIGFDIDLANAVFKLYGIDVEWQAI----DWDMKETELKNGTI 81 (268)
T ss_dssp HHHTEEEEEECT--EETTTEEECTTS----------CEECHHHHHHHHHHHTTTCEEEEEEC----CGGGHHHHHHHTSC
T ss_pred hcCCcEEEEECC--CCCCceEECCCC----------CEEEehHHHHHHHHHHhCCcEEEEEC----CHHHHHHHHHCCCC
Confidence 456789999953 567788876555 79999999999999999998665543 49999999999999
Q ss_pred cEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCc
Q 004136 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGT 609 (771)
Q Consensus 530 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (771)
|++++++..+.+|.+.++||.||+.....+++++.+.
T Consensus 82 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------- 118 (268)
T 3hv1_A 82 DLIWNGYSVTDERKQSADFTEPYMVNEQVLVTKKSSG------------------------------------------- 118 (268)
T ss_dssp SEECSSCBCCHHHHTTCEECCCCEEECEEEEEEGGGC-------------------------------------------
T ss_pred CEEEecCccCHHHHhcCcCcHHHeeCceEEEEECCCC-------------------------------------------
Confidence 9999889999999999999999999999999987763
Q ss_pred ccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEe
Q 004136 610 LKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCV 689 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~ 689 (771)
|++++||. |.+||+.
T Consensus 119 ---------------------------------------------------------------i~~~~dL~--g~~i~v~ 133 (268)
T 3hv1_A 119 ---------------------------------------------------------------IDSVAGMA--GKTLGAQ 133 (268)
T ss_dssp ---------------------------------------------------------------CCSSGGGT--TCCEEEE
T ss_pred ---------------------------------------------------------------CCCHHHhC--CCEEEEE
Confidence 89999998 8999999
Q ss_pred cChHHHHHHHHhcC-----CCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcC--CceeEee-eeeeceEE
Q 004136 690 DDSFVKKYLEEVLG-----FRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYC--KKYTAIN-TYRFGGLG 761 (771)
Q Consensus 690 ~~s~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c--~~l~~~~-~~~~~~~g 761 (771)
.++....++.+... .+..++..+.+ .++++++|.+|++|+++.+...+.+++++.. ..+.+++ .+...+++
T Consensus 134 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 212 (268)
T 3hv1_A 134 AGSSGYDAFNASPKILKDVVANQKVVQYST-FTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFA 212 (268)
T ss_dssp TTCHHHHHHHHCTTTTTTTSGGGCEEEESS-HHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEEC
T ss_pred eCCchHHHHHHhhHHHhhhcccceEEEeCC-HHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEE
Confidence 99999988876311 11235667777 9999999999999999999999999888764 4488888 78889999
Q ss_pred EEEecCCCC
Q 004136 762 FVSNIIYSH 770 (771)
Q Consensus 762 ~~~~k~s~~ 770 (771)
++++|+++.
T Consensus 213 ~~~~k~~~~ 221 (268)
T 3hv1_A 213 VGARKVDKT 221 (268)
T ss_dssp CEECTTCHH
T ss_pred EEEcCCCHH
Confidence 999998764
No 55
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.77 E-value=1.4e-18 Score=172.43 Aligned_cols=192 Identities=18% Similarity=0.325 Sum_probs=160.4
Q ss_pred CceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEE
Q 004136 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAA 532 (771)
Q Consensus 453 ~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~ 532 (771)
++|+|++.. .++||.+.+.++ ++.|+++||++.+++++|++++++.. +|..++..+.+|++|++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~~ 65 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGPSG----------QVEGFGADIVKAVCKQMQAVCTISNQ----PWDSLIPSLKLGKFDAL 65 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC--C----------CEESHHHHHHHHHHHHTTCEEEEEEC----CHHHHHHHHHHTSCSEE
T ss_pred ceEEEEEcC--CCCCeeEECCCC----------CcccchHHHHHHHHHHhCCeEEEEeC----CHHHHHHHHhCCCCCEE
Confidence 578999854 456777765555 79999999999999999999666542 59999999999999999
Q ss_pred EeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCcccc
Q 004136 533 VGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTLKD 612 (771)
Q Consensus 533 ~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (771)
++++..+.+|.+.+.||.|++.....+++++.+..
T Consensus 66 ~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~--------------------------------------------- 100 (227)
T 3tql_A 66 FGGMNITTARQKEVDFTDPYYTNSVSFIADKNTPL--------------------------------------------- 100 (227)
T ss_dssp CSSCBCCTTGGGTEEECSCSBCCEEEEEEETTSCC---------------------------------------------
T ss_pred EecCcCCHhHHhheecccceeccceEEEEeCCCCC---------------------------------------------
Confidence 88899999999999999999999999999888752
Q ss_pred hHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEecCh
Q 004136 613 QISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCVDDS 692 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~~~s 692 (771)
+++++||. |.++|+..++
T Consensus 101 ------------------------------------------------------------~~~~~dL~--g~~v~~~~g~ 118 (227)
T 3tql_A 101 ------------------------------------------------------------TLSKQGLK--GKIIGVQGGT 118 (227)
T ss_dssp ------------------------------------------------------------CCSTTTTT--TCEEEEETTS
T ss_pred ------------------------------------------------------------CCCHHHhC--CCEEEEEecc
Confidence 47899998 9999999999
Q ss_pred HHHHHHHHhcCCCC-CCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCC-ceeEee-eeeec-----eEEEEE
Q 004136 693 FVKKYLEEVLGFRS-GNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCK-KYTAIN-TYRFG-----GLGFVS 764 (771)
Q Consensus 693 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~-~l~~~~-~~~~~-----~~g~~~ 764 (771)
....++++.. .. .++..+.+ .++++++|.+|++|+++.+...+.+++++... .+.+++ .+... ++++++
T Consensus 119 ~~~~~l~~~~--~~~~~~~~~~~-~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (227)
T 3tql_A 119 TFDSYLQDSF--GNSITIQRYPS-EEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAV 195 (227)
T ss_dssp HHHHHHHHHH--GGGSEEEEESS-HHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEE
T ss_pred cHHHHHHHhc--cccceEEEcCC-HHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEE
Confidence 9998888752 22 56777888 99999999999999999999999998887654 377777 55444 459999
Q ss_pred ecCCCC
Q 004136 765 NIIYSH 770 (771)
Q Consensus 765 ~k~s~~ 770 (771)
+|+++.
T Consensus 196 ~~~~~~ 201 (227)
T 3tql_A 196 KKGNQA 201 (227)
T ss_dssp ETTCHH
T ss_pred cCCCHH
Confidence 999764
No 56
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.77 E-value=5e-18 Score=169.27 Aligned_cols=194 Identities=11% Similarity=0.211 Sum_probs=165.2
Q ss_pred CCCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccc
Q 004136 450 SNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTY 529 (771)
Q Consensus 450 ~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~ 529 (771)
...++|+|++. +.++||.+.+.++ .+.|+++||++.+++++|++++++.. +|..++..+.+|++
T Consensus 8 ~~~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~ 71 (234)
T 3h7m_A 8 DRHRTIVVGGD--RDYPPYEFIDQNG----------KPAGYNVELTRAIAEVMGMTVEFRLG----AWSEMFSALKSGRV 71 (234)
T ss_dssp CSSSCEEEEEE--TEETTTEEECTTS----------CEESHHHHHHHHHHHHHTCCEEEEEE----CGGGHHHHHHTTSS
T ss_pred CCCCEEEEEec--CCCCCeEEECCCC----------CEeeeEHHHHHHHHHHcCCceEEEeC----CHHHHHHHHhCCCe
Confidence 35678999983 3567788876555 79999999999999999999766633 59999999999999
Q ss_pred cEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCc
Q 004136 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGT 609 (771)
Q Consensus 530 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (771)
|++ .++..+.+|.+.+.||.|++.....+++++.+..
T Consensus 72 D~~-~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~------------------------------------------ 108 (234)
T 3h7m_A 72 DVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSPP------------------------------------------ 108 (234)
T ss_dssp SEE-EEEECCHHHHTTEEEEEEEEEEEEEEEEESSSCC------------------------------------------
T ss_pred eEE-EeccCCHhHHhhcCCCccccccceEEEEECCCCC------------------------------------------
Confidence 995 6799999999999999999999999999887753
Q ss_pred ccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEe
Q 004136 610 LKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCV 689 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~ 689 (771)
+++++||. +.++|+.
T Consensus 109 ---------------------------------------------------------------~~~~~dL~--g~~i~~~ 123 (234)
T 3h7m_A 109 ---------------------------------------------------------------AAGLEDLR--GRKVALH 123 (234)
T ss_dssp ---------------------------------------------------------------CSSGGGGT--TSCEEEE
T ss_pred ---------------------------------------------------------------CCCHHHhC--CCEEEEE
Confidence 88999998 8999999
Q ss_pred cChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhc-CCceeEee-eeeeceEEEEEecC
Q 004136 690 DDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKY-CKKYTAIN-TYRFGGLGFVSNII 767 (771)
Q Consensus 690 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~-c~~l~~~~-~~~~~~~g~~~~k~ 767 (771)
.++....++.+. ....++..+.+ .++++++|.+|++|+++.+...+.+++++. ...+.+++ .+....++++++|+
T Consensus 124 ~g~~~~~~l~~~--~~~~~~~~~~~-~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (234)
T 3h7m_A 124 RDGIMHEYLAER--GYGKDLVLTPT-PADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQG 200 (234)
T ss_dssp TTSHHHHHHHTT--TCGGGEEEESS-HHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETT
T ss_pred eCchHHHHHHhc--CCCceEEEeCC-HHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCC
Confidence 999998888763 33446777888 999999999999999999999999888764 33488888 88889999999999
Q ss_pred CCC
Q 004136 768 YSH 770 (771)
Q Consensus 768 s~~ 770 (771)
++.
T Consensus 201 ~~~ 203 (234)
T 3h7m_A 201 DAE 203 (234)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 57
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.77 E-value=6.5e-18 Score=168.28 Aligned_cols=191 Identities=19% Similarity=0.333 Sum_probs=161.2
Q ss_pred CCceEEEeccCCCccceEEe--ccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccc
Q 004136 452 QEPMRIGVPTRTFFEKFVVI--KDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTY 529 (771)
Q Consensus 452 ~~~~~v~~~~~~~~~p~~~~--~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~ 529 (771)
+++|+|++.. ++||.+. +.++ ++.|+++||++.+++++|++++++..+ .|..++..|.+|++
T Consensus 3 ~~~l~v~~~~---~~P~~~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~---~~~~~~~~l~~g~~ 66 (233)
T 1ii5_A 3 AMALKVGVVG---NPPFVFYGEGKNA----------AFTGISLDVWRAVAESQKWNSEYVRQN---SISAGITAVAEGEL 66 (233)
T ss_dssp SCCEEEEECC---CTTTCEEC---------------CEESHHHHHHHHHHHHHTCCEEEEECS---CHHHHHHHHHTTSC
T ss_pred CceEEEEecC---CCCeEEEecCCCC----------CEEEEeHHHHHHHHHHcCCcEEEEEeC---CHHHHHHHHHCCCc
Confidence 4679999864 4567776 3344 799999999999999999996666543 59999999999999
Q ss_pred cEEEeeEeeeccce--eeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCc
Q 004136 530 DAAVGDLTILGNRT--EYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFR 607 (771)
Q Consensus 530 D~~~~~~~~t~~r~--~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 607 (771)
|++++++..+.+|. +.++|+.|++.....+++++.+..
T Consensus 67 D~~~~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~---------------------------------------- 106 (233)
T 1ii5_A 67 DILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATP---------------------------------------- 106 (233)
T ss_dssp SEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTT----------------------------------------
T ss_pred CEEEeeeecCccccccceeEEccceeecCeEEEEECCCCC----------------------------------------
Confidence 99998899999999 999999999999999999887631
Q ss_pred CcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEE
Q 004136 608 GTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVG 687 (771)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g 687 (771)
.+++++||. |.++|
T Consensus 107 ----------------------------------------------------------------~i~~~~dL~--g~~v~ 120 (233)
T 1ii5_A 107 ----------------------------------------------------------------LFRSVGDLK--NKEVA 120 (233)
T ss_dssp ----------------------------------------------------------------TCSSGGGGT--TCEEE
T ss_pred ----------------------------------------------------------------CCCCHHHhC--CCeEE
Confidence 189999998 89999
Q ss_pred EecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcC-CceeEee-eeeeceEEEEEe
Q 004136 688 CVDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYC-KKYTAIN-TYRFGGLGFVSN 765 (771)
Q Consensus 688 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c-~~l~~~~-~~~~~~~g~~~~ 765 (771)
+..++....++++. ..++..+.+ ..+++++|.+|++|+++.+...+.+++++.. ..+.+++ .+....++++++
T Consensus 121 ~~~g~~~~~~l~~~----~~~~~~~~~-~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (233)
T 1ii5_A 121 VVRDTTAVDWANFY----QADVRETNN-LTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLK 195 (233)
T ss_dssp EETTSHHHHHHHHT----TCEEEEESS-HHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEE
T ss_pred EECCccHHHHHHHc----CCCeEEcCC-HHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEc
Confidence 99999998888773 345667787 9999999999999999999999999887764 2488888 788889999999
Q ss_pred cCCC
Q 004136 766 IIYS 769 (771)
Q Consensus 766 k~s~ 769 (771)
|+++
T Consensus 196 k~~~ 199 (233)
T 1ii5_A 196 ENSP 199 (233)
T ss_dssp TTCT
T ss_pred CCch
Confidence 9986
No 58
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.77 E-value=6.2e-18 Score=167.50 Aligned_cols=192 Identities=18% Similarity=0.322 Sum_probs=162.1
Q ss_pred CCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccE
Q 004136 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDA 531 (771)
Q Consensus 452 ~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~ 531 (771)
.++|+|++. +.++||.+.++ + ++.|+++|+++.+++++|+++++... .|..++..+.+|++|+
T Consensus 2 ~~~l~v~~~--~~~~P~~~~~~-g----------~~~G~~~dl~~~~~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~ 64 (226)
T 1wdn_A 2 DKKLVVATD--TAFVPFEFKQG-D----------LYVGFDVDLWAAIAKELKLDYELKPM----DFSGIIPALQTKNVDL 64 (226)
T ss_dssp --CEEEEEE--SSBTTTBEEET-T----------EEESHHHHHHHHHHHHHTCCEEEEEE----CGGGHHHHHHTTSSSE
T ss_pred CceEEEEEC--CCCCCeeEecC-C----------cEEEeeHHHHHHHHHHhCCEEEEEEC----CHHHHHHHHhCCCCCE
Confidence 357899986 35567777643 4 78999999999999999998666643 5899999999999999
Q ss_pred EEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCccc
Q 004136 532 AVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTLK 611 (771)
Q Consensus 532 ~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (771)
+++++..+.+|.+.+.|+.|++.....+++++.++.
T Consensus 65 ~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~-------------------------------------------- 100 (226)
T 1wdn_A 65 ALAGITITDERKKAIDFSDGYYKSGLLVMVKANNND-------------------------------------------- 100 (226)
T ss_dssp EEEEEECCHHHHTTSEECSCCEEEEEEEEEETTCCS--------------------------------------------
T ss_pred EEEcCcCCHHHhCccccccchhcCceEEEEeCCCCC--------------------------------------------
Confidence 998899999999999999999999999999887642
Q ss_pred chHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEecC
Q 004136 612 DQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCVDD 691 (771)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~~~ 691 (771)
+++++||. |.++|+..+
T Consensus 101 -------------------------------------------------------------i~~~~dL~--g~~i~~~~g 117 (226)
T 1wdn_A 101 -------------------------------------------------------------VKSVKDLD--GKVVAVKSG 117 (226)
T ss_dssp -------------------------------------------------------------CSSSTTTT--TCEEEEETT
T ss_pred -------------------------------------------------------------CCCHHHhC--CCEEEEEcC
Confidence 88999998 899999999
Q ss_pred hHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcC-CceeEee-eeeeceEEEEEecCCC
Q 004136 692 SFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYC-KKYTAIN-TYRFGGLGFVSNIIYS 769 (771)
Q Consensus 692 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c-~~l~~~~-~~~~~~~g~~~~k~s~ 769 (771)
+....++++. ....++..+.+ .++++++|.+|++|+++.+...+.+++++.. ..+++++ .+....++++++|+++
T Consensus 118 ~~~~~~l~~~--~~~~~~~~~~~-~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~ 194 (226)
T 1wdn_A 118 TGSVDYAKAN--IKTKDLRQFPN-IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSD 194 (226)
T ss_dssp SHHHHHHHHH--CCCSEEEEESS-HHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCH
T ss_pred CcHHHHHHHh--CCCceEEEeCC-HHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCH
Confidence 9998888875 34456677787 9999999999999999999999998887764 3488888 7778899999999875
Q ss_pred C
Q 004136 770 H 770 (771)
Q Consensus 770 ~ 770 (771)
.
T Consensus 195 ~ 195 (226)
T 1wdn_A 195 E 195 (226)
T ss_dssp H
T ss_pred H
Confidence 3
No 59
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.75 E-value=5.7e-18 Score=170.31 Aligned_cols=195 Identities=12% Similarity=0.195 Sum_probs=158.2
Q ss_pred CCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCC-CcccEEEecCCCChHHHHHHHhcccc
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLN-YDLPYEFVPHDGVYDDLINGVYDKTY 529 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~-f~~~~~~~~~~~~~~~~i~~l~~~~~ 529 (771)
..++|+|++.. .++||.+ +.++ ++.|+++||++.+++++| +++++... +|..++..|.+|++
T Consensus 6 ~~~~l~v~~~~--~~~P~~~-~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~~l~~g~~ 68 (246)
T 4eq9_A 6 SKKEIIVATNG--SPRPFIY-EENG----------ELTGYEIEVVRAIFKDSDKYDVKFEKT----EWSGVFAGLDADRY 68 (246)
T ss_dssp -CEEEEEEECC--CSTTTSE-EETT----------EEESHHHHHHHHHHTTCSSEEEEEEEC----CHHHHHHHHHTTSC
T ss_pred CCCEEEEEeCC--CcCCeEE-cCCC----------CCcccHHHHHHHHHHHcCCceEEEEeC----CHHHHHHHHhCCCc
Confidence 45679999863 4456666 3444 899999999999999999 99655543 59999999999999
Q ss_pred cEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCc
Q 004136 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGT 609 (771)
Q Consensus 530 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (771)
|+++++++.+.+|.+.+.||.|++.....+++++....
T Consensus 69 D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~------------------------------------------ 106 (246)
T 4eq9_A 69 NMAVNNLSYTKERAEKYLYAAPIAQNPNVLVVKKDDSS------------------------------------------ 106 (246)
T ss_dssp SEECSSCCCCHHHHHHEEECCCCEECCEEEEEETTCCS------------------------------------------
T ss_pred CEEecccccChhhhhceeeccceecCceEEEEECCCCC------------------------------------------
Confidence 99998899999999999999999999999999884432
Q ss_pred ccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEe
Q 004136 610 LKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCV 689 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~ 689 (771)
|++++||. |.++|+.
T Consensus 107 ---------------------------------------------------------------i~~~~dL~--g~~i~~~ 121 (246)
T 4eq9_A 107 ---------------------------------------------------------------IKSLDDIG--GKSTEVV 121 (246)
T ss_dssp ---------------------------------------------------------------CSSGGGCT--TCEEEEC
T ss_pred ---------------------------------------------------------------CCCHHHhC--CCEEEEe
Confidence 89999998 9999999
Q ss_pred cChHHHHHHHH---hcCCCCCCcc-cCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcC-CceeEee-eeeec-eEEE
Q 004136 690 DDSFVKKYLEE---VLGFRSGNIV-PFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYC-KKYTAIN-TYRFG-GLGF 762 (771)
Q Consensus 690 ~~s~~~~~l~~---~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c-~~l~~~~-~~~~~-~~g~ 762 (771)
.++....++.+ ..+.....+. ...+ .++++++|.+|++|+++.+...+.+++++.. +.+++++ ..... .+++
T Consensus 122 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (246)
T 4eq9_A 122 QATTSAKQLEAYNAEHTDNPTILNYTKAD-FQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYP 200 (246)
T ss_dssp TTCHHHHHHHHHHHHCTTSCCEEEECCCC-HHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECC
T ss_pred cCccHHHHHHHHHhhCCCcceEEEecCCC-HHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEE
Confidence 99998888876 3222122333 2235 9999999999999999999999999888765 3488888 66555 4899
Q ss_pred EEecCCCC
Q 004136 763 VSNIIYSH 770 (771)
Q Consensus 763 ~~~k~s~~ 770 (771)
+++|+++.
T Consensus 201 ~~~k~~~~ 208 (246)
T 4eq9_A 201 LLAQGQDE 208 (246)
T ss_dssp EEETTCHH
T ss_pred EEcCCCHH
Confidence 99999864
No 60
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.75 E-value=8.1e-18 Score=167.18 Aligned_cols=191 Identities=19% Similarity=0.336 Sum_probs=161.4
Q ss_pred CCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhccccc
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D 530 (771)
..++|+|++. +.++||.+.+.++ ++.|+++|+++.+++++|+++++... +|..++..+.+|++|
T Consensus 4 ~a~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D 67 (229)
T 2y7i_A 4 SARTLHFGTS--ATYAPYEFVDADN----------KIVGFDIDVANAVCKEMQAECSFTNQ----SFDSLIPSLRFKKFD 67 (229)
T ss_dssp SCCEEEEEEC--CCBTTTBEECTTS----------CEESHHHHHHHHHHHHTTCEEEEEEC----CGGGHHHHHHTTSCS
T ss_pred cCCcEEEEeC--CCcCCceEECCCC----------CCcceeHHHHHHHHHHhCCeEEEEEc----CHHHHHHHHhCCCce
Confidence 3467899984 4566777765545 78999999999999999999665542 599999999999999
Q ss_pred EEEeeEeeeccceeeeecccceeec-cEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCc
Q 004136 531 AAVGDLTILGNRTEYVEFTQPYAES-GFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGT 609 (771)
Q Consensus 531 ~~~~~~~~t~~r~~~~~fs~p~~~~-~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (771)
++++++..+.+|.+.+.|+.|++.. ...+++++.+
T Consensus 68 ~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~-------------------------------------------- 103 (229)
T 2y7i_A 68 AVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA-------------------------------------------- 103 (229)
T ss_dssp EECSSCBCCHHHHTTSEECSCSBCCCCEEEEEETTS--------------------------------------------
T ss_pred EEEecCccCHHHhcceeeccccccCCcEEEEEeCCC--------------------------------------------
Confidence 9987889999999999999999999 9999998766
Q ss_pred ccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEe
Q 004136 610 LKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCV 689 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~ 689 (771)
+++++||. |.++|+.
T Consensus 104 ---------------------------------------------------------------~~~~~dL~--g~~v~~~ 118 (229)
T 2y7i_A 104 ---------------------------------------------------------------YHTFADLK--GKKVGLE 118 (229)
T ss_dssp ---------------------------------------------------------------CCSTGGGT--TCEEEEE
T ss_pred ---------------------------------------------------------------CCCHHHHC--CCEEEEe
Confidence 67899998 8999999
Q ss_pred cChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee-eeee-----ceEEEE
Q 004136 690 DDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN-TYRF-----GGLGFV 763 (771)
Q Consensus 690 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~-~~~~-----~~~g~~ 763 (771)
.++....++++. .+..++..+.+ .++++++|.+|++|+++.+...+.++++++.+ +++++ .+.. ..++++
T Consensus 119 ~g~~~~~~l~~~--~~~~~~~~~~~-~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 194 (229)
T 2y7i_A 119 NGTTHQRYLQDK--QQAITPVAYDS-YLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPD-YAIMDERASDPDYYGKGLGIA 194 (229)
T ss_dssp TTSHHHHHHHHH--CTTSEEEEESC-HHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTT-EEECSCCBCCTTTSCCCBCCE
T ss_pred cCCcHHHHHHHh--CCCCeEEecCC-HHHHHHHHHcCCcCEEEechHHHHHHHHhCCC-eEEeccccccccccccceEEE
Confidence 999998888874 34456777887 99999999999999999999999999988775 88887 5533 388999
Q ss_pred EecCCCC
Q 004136 764 SNIIYSH 770 (771)
Q Consensus 764 ~~k~s~~ 770 (771)
++|+++.
T Consensus 195 ~~~~~~~ 201 (229)
T 2y7i_A 195 VRKDNDA 201 (229)
T ss_dssp ECTTCHH
T ss_pred EeCCCHH
Confidence 9998763
No 61
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.74 E-value=9.8e-18 Score=170.62 Aligned_cols=201 Identities=16% Similarity=0.311 Sum_probs=153.7
Q ss_pred CCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecC--------C-CChHHHHH
Q 004136 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH--------D-GVYDDLIN 522 (771)
Q Consensus 452 ~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~--------~-~~~~~~i~ 522 (771)
+++|+|++.+. +||.+.+.++.. -+++.++.||++||++++++++|++++++..+. + ..|.+++.
T Consensus 3 ~~~l~v~~~~~---pP~~~~~~~~~~---~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (263)
T 1mqi_A 3 NKTVVVTTILE---SPYVMMKKNHEM---LEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVG 76 (263)
T ss_dssp CCCEEEEECCB---TTTBEECTTGGG---CCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHH
T ss_pred CeEEEEEEecC---CCcEEEecCccc---ccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHH
Confidence 56799999765 456666543100 000128999999999999999999977766531 1 16999999
Q ss_pred HHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhcccc
Q 004136 523 GVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQS 602 (771)
Q Consensus 523 ~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~ 602 (771)
.|.+|++|++++++++|++|.+.++||.||+..+..++++++++
T Consensus 77 ~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------ 120 (263)
T 1mqi_A 77 ELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP------------------------------------ 120 (263)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCS------------------------------------
T ss_pred HHHcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCccc------------------------------------
Confidence 99999999999889999999999999999999999999988763
Q ss_pred CccCcCcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhC
Q 004136 603 NPEFRGTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSG 682 (771)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~ 682 (771)
|++++||...
T Consensus 121 ----------------------------------------------------------------------i~~~~dL~g~ 130 (263)
T 1mqi_A 121 ----------------------------------------------------------------------IESAEDLSKQ 130 (263)
T ss_dssp ----------------------------------------------------------------------CCSHHHHHTC
T ss_pred ----------------------------------------------------------------------cCCHHHHhcc
Confidence 8899999832
Q ss_pred -CceEEEe-cChHHHHHHHHhcCC-----------CCCCcccCCCCHHHHHHHH--HcCCceEEEecchhHHHHHHhc-C
Q 004136 683 -NLKVGCV-DDSFVKKYLEEVLGF-----------RSGNIVPFGNTEANYIQKF--ENNTIDSLFLERPYEKVFLDKY-C 746 (771)
Q Consensus 683 -~~~~g~~-~~s~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~v--~~~~~~a~i~~~~~~~~~~~~~-c 746 (771)
..++|+. .++.. .++.+. .. ...++..+.+ .++++++| .+|+ ||++.+...+.|+++++ |
T Consensus 131 ~~~~ig~v~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~g~-da~~~~~~~~~~~~~~~~~ 206 (263)
T 1mqi_A 131 TEIAYGTLDSGSTK-EFFRRS-KIAVFDKMWTYMRSAEPSVFVRT-TAEGVARVRKSKGK-YAYLLESTMNEYIEQRKPC 206 (263)
T ss_dssp SSSEEECBSSSHHH-HHHHHC-CSHHHHHHHHHHHHCSSCCCBSS-HHHHHHHHHHTTTS-EEEEEEHHHHHHHTTSTTC
T ss_pred cCeeEEEEeccHHH-HHHHhc-cchhHHHHHHHHhhCCCceecCC-HHHHHHHHhhcCCc-EEEEechHHHHHHHhcCCC
Confidence 2346754 45544 444331 11 1124566777 99999999 8999 89999999998888765 5
Q ss_pred CceeEee-eeeeceEEEEEecCCC
Q 004136 747 KKYTAIN-TYRFGGLGFVSNIIYS 769 (771)
Q Consensus 747 ~~l~~~~-~~~~~~~g~~~~k~s~ 769 (771)
+ +.+++ .+....++++++|+++
T Consensus 207 ~-~~~~~~~~~~~~~~~~~~k~~~ 229 (263)
T 1mqi_A 207 D-TMKVGGNLDSKGYGIATPKGSS 229 (263)
T ss_dssp C-EEEESCCSCCEEECCEEETTCT
T ss_pred c-eEEcCCcccccceEEEEeCCCc
Confidence 5 77787 8888899999999974
No 62
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.74 E-value=4.8e-18 Score=170.08 Aligned_cols=195 Identities=18% Similarity=0.280 Sum_probs=157.8
Q ss_pred CCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccE
Q 004136 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDA 531 (771)
Q Consensus 452 ~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~ 531 (771)
.++|+|++ .+.++||.+.+.++ ++.|+++||++.+++++|++++++.. +|.+++..|.+|++|+
T Consensus 3 ~~~l~v~~--~~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~----~~~~~~~~l~~g~~D~ 66 (239)
T 1lst_A 3 PQTVRIGT--DTTYAPFSSKDAKG----------EFIGFDIDLGNEMCKRMQVKCTWVAS----DFDALIPSLKAKKIDA 66 (239)
T ss_dssp CSEEEEEE--CSCBTTTBEECTTC----------CEESHHHHHHHHHHHHHTCEEEEEEC----CGGGHHHHHHTTSCSE
T ss_pred cceEEEEE--CCCcCCeeEECCCC----------CEeeEHHHHHHHHHHHHCCeEEEEeC----CHHHHHHHHhCCCCCE
Confidence 46799998 33566777765555 79999999999999999998655542 5999999999999999
Q ss_pred EEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCccc
Q 004136 532 AVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTLK 611 (771)
Q Consensus 532 ~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (771)
++++++.+.+|.+.++||.|++.....+++++.++.
T Consensus 67 ~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~-------------------------------------------- 102 (239)
T 1lst_A 67 IISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI-------------------------------------------- 102 (239)
T ss_dssp ECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCCC--------------------------------------------
T ss_pred EEECcCcCHHHhhceeecccceeCceEEEEeCCCCC--------------------------------------------
Confidence 998899999999999999999999999999987742
Q ss_pred chHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEecC
Q 004136 612 DQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCVDD 691 (771)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~~~ 691 (771)
..+++||. |.++|+..+
T Consensus 103 -------------------------------------------------------------~~~~~dL~--g~~v~~~~g 119 (239)
T 1lst_A 103 -------------------------------------------------------------QPTLESLK--GKHVGVLQG 119 (239)
T ss_dssp -------------------------------------------------------------CSSHHHHT--TCEEEEETT
T ss_pred -------------------------------------------------------------CCCHHHhC--CCEEEEEcC
Confidence 24899998 899999999
Q ss_pred hHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHH-HHHhc-CCceeEee-eeeec-----eEEEE
Q 004136 692 SFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKV-FLDKY-CKKYTAIN-TYRFG-----GLGFV 763 (771)
Q Consensus 692 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~-~~~~~-c~~l~~~~-~~~~~-----~~g~~ 763 (771)
+....++++.......++..+.+ .++++++|.+|++|+++.+...+.+ ++.+. ...+.+++ .+... .++++
T Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 198 (239)
T 1lst_A 120 STQEAYANDNWRTKGVDVVAYAN-QDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVG 198 (239)
T ss_dssp SHHHHHHHHHTGGGTCEEEEESS-HHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCE
T ss_pred ccHHHHHHHhcccCCCeEEEcCC-HHHHHHHHHcCCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEE
Confidence 99988887742113346667787 9999999999999999999988764 44432 23377777 55543 79999
Q ss_pred EecCCCC
Q 004136 764 SNIIYSH 770 (771)
Q Consensus 764 ~~k~s~~ 770 (771)
++|+++.
T Consensus 199 ~~k~~~~ 205 (239)
T 1lst_A 199 LRKDDTE 205 (239)
T ss_dssp ECTTCHH
T ss_pred EeCCCHH
Confidence 9998764
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.74 E-value=2.9e-18 Score=175.36 Aligned_cols=201 Identities=18% Similarity=0.281 Sum_probs=161.4
Q ss_pred ccccCCCCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHH
Q 004136 445 GWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGV 524 (771)
Q Consensus 445 ~~~~~~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l 524 (771)
.+......++|+|++. +.++||.+.+.+. ..| ++.|+++||++++++++|++++++.. .|.+++..|
T Consensus 13 ~~~~i~~~~~l~v~~~--~~~pP~~~~~~~~---~~g----~~~G~~~dl~~~i~~~~g~~v~~~~~----~~~~~~~~l 79 (271)
T 2iee_A 13 GWEQIKDKGKIVVATS--GTLYPTSYHDTDS---GSD----KLTGYEVEVVREAAKRLGLKVEFKEM----GIDGMLTAV 79 (271)
T ss_dssp CHHHHHHHTEEEEEEC--SCBTTTBEEETTT---TCC----EEECHHHHHHHHHHHHTTCEEEEEEC----CSTTHHHHH
T ss_pred hHHhhccCCeEEEEEC--CCCCCeeEeCCCC---CCC----CceeeHHHHHHHHHHHcCCeEEEEEC----CHHHHHHHH
Confidence 3444445678999985 3566777765551 012 89999999999999999998666543 488999999
Q ss_pred hcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCc
Q 004136 525 YDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNP 604 (771)
Q Consensus 525 ~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~ 604 (771)
.+|++|+++++++.|.+|.+.++||.||+.....+++++.+..
T Consensus 80 ~~G~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~------------------------------------- 122 (271)
T 2iee_A 80 NSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLS------------------------------------- 122 (271)
T ss_dssp HHTSSSEECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTGG-------------------------------------
T ss_pred HCCCcCEEEeCCcCChhhccceEEeecceeCCeEEEEECCCCC-------------------------------------
Confidence 9999999998889999999999999999999999999887631
Q ss_pred cCcCcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCc
Q 004136 605 EFRGTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNL 684 (771)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~ 684 (771)
.|++++||. |.
T Consensus 123 -------------------------------------------------------------------~i~~~~dL~--g~ 133 (271)
T 2iee_A 123 -------------------------------------------------------------------GIKTLKDLK--GK 133 (271)
T ss_dssp -------------------------------------------------------------------GCSSGGGGT--TC
T ss_pred -------------------------------------------------------------------CCCCHHHhC--CC
Confidence 188999998 99
Q ss_pred eEEEecChHHHHHHHHhcCCCCCCcccCCCCHHHH--HHHHHcCCceEEEecchhHHHHHH-hcC-CceeEe-e-eeeec
Q 004136 685 KVGCVDDSFVKKYLEEVLGFRSGNIVPFGNTEANY--IQKFENNTIDSLFLERPYEKVFLD-KYC-KKYTAI-N-TYRFG 758 (771)
Q Consensus 685 ~~g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~a~i~~~~~~~~~~~-~~c-~~l~~~-~-~~~~~ 758 (771)
+||+..++....++++ .+ . ++..+.+ ..++ +++|.+|++| ++.+...+.+++. ++. ..++++ + .+...
T Consensus 134 ~i~v~~g~~~~~~l~~-~~--~-~~~~~~~-~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (271)
T 2iee_A 134 KAAGAATTVYMEVARK-YG--A-KEVIYDN-ATNEQYLKDVANGRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPN 207 (271)
T ss_dssp EEESCTTSHHHHHHHH-TT--C-EEEECSS-CCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEE
T ss_pred EEEEeCCccHHHHHHH-cC--C-ceEEeCC-hhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccc
Confidence 9999999999888876 22 2 6777777 7888 9999999999 7777777766655 543 347887 6 78888
Q ss_pred eEEEEEecCCCC
Q 004136 759 GLGFVSNIIYSH 770 (771)
Q Consensus 759 ~~g~~~~k~s~~ 770 (771)
.++++++|+++.
T Consensus 208 ~~~~~~~k~~~~ 219 (271)
T 2iee_A 208 KQALVMKKSNAA 219 (271)
T ss_dssp EECCEEETTCHH
T ss_pred eEEEEEcCCCHH
Confidence 999999999764
No 64
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.72 E-value=2.3e-17 Score=167.11 Aligned_cols=198 Identities=14% Similarity=0.151 Sum_probs=161.9
Q ss_pred CCCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCc-ccEEEecCCCChHHHHHHHhccc
Q 004136 450 SNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYD-LPYEFVPHDGVYDDLINGVYDKT 528 (771)
Q Consensus 450 ~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~-~~~~~~~~~~~~~~~i~~l~~~~ 528 (771)
...++|+|++.. ++||.+.++++ ++.|+++||++++++++|++ +++... .|..++..+.+|+
T Consensus 10 ~~~~~l~v~~~~---~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~~l~~g~ 72 (257)
T 2q88_A 10 KEQGFARIAIAN---EPPFTAVGADG----------KVSGAAPDVAREIFKRLGVADVVASIS----EYGAMIPGLQAGR 72 (257)
T ss_dssp HHHTEEEEEECC---CTTTCEECTTC----------CEESHHHHHHHHHHHHTTCCEEEEEEC----CGGGHHHHHHTTS
T ss_pred hcCCeEEEEcCC---CCCeeEECCCC----------CcccccHHHHHHHHHHcCCCeeeEEeC----CHHHHHHHHHCCC
Confidence 345789999864 45667765544 78999999999999999998 666643 4899999999999
Q ss_pred ccEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcC
Q 004136 529 YDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRG 608 (771)
Q Consensus 529 ~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 608 (771)
+|++++++..+.+|.+.++||.|++.....+++++.+...
T Consensus 73 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~---------------------------------------- 112 (257)
T 2q88_A 73 HDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLG---------------------------------------- 112 (257)
T ss_dssp CSEECSCCBCCHHHHTTSEECSCCCEECEEEEEETTCTTC----------------------------------------
T ss_pred cCEEEecccCCHHHHhccccccchhcCceEEEEECCCccC----------------------------------------
Confidence 9999888999999999999999999999999998876421
Q ss_pred cccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhC-CceEE
Q 004136 609 TLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSG-NLKVG 687 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~-~~~~g 687 (771)
+++++||... |.++|
T Consensus 113 ----------------------------------------------------------------i~~~~dL~~~~g~~i~ 128 (257)
T 2q88_A 113 ----------------------------------------------------------------LKSYKDIADNPDAKIG 128 (257)
T ss_dssp ----------------------------------------------------------------CCBHHHHHHCTTCCEE
T ss_pred ----------------------------------------------------------------CCCHHHHhccCCceEE
Confidence 8899999855 88999
Q ss_pred EecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcC-CceeEeeeee---eceEEEE
Q 004136 688 CVDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYC-KKYTAINTYR---FGGLGFV 763 (771)
Q Consensus 688 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c-~~l~~~~~~~---~~~~g~~ 763 (771)
+..++....++++ .+.+..++..+.+ .++++++|.+|++|+++.+...+.+++++.. +.+....++. ...++++
T Consensus 129 ~~~g~~~~~~l~~-~~~~~~~~~~~~~-~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (257)
T 2q88_A 129 APGGGTEEKLALE-AGVPRDRVIVVPD-GQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAA 206 (257)
T ss_dssp ECTTSHHHHHHHH-TTCCGGGEEECSS-HHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCE
T ss_pred EECCcccHHHHHh-cCCCCceEEEcCC-HHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEE
Confidence 9999999888876 3444456777887 9999999999999999999999999888765 3455544222 3568889
Q ss_pred EecCCCC
Q 004136 764 SNIIYSH 770 (771)
Q Consensus 764 ~~k~s~~ 770 (771)
++|+++.
T Consensus 207 ~~k~~~~ 213 (257)
T 2q88_A 207 FRKGDEA 213 (257)
T ss_dssp ECGGGHH
T ss_pred EcCCCHH
Confidence 9998653
No 65
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.71 E-value=8e-17 Score=166.61 Aligned_cols=192 Identities=14% Similarity=0.205 Sum_probs=164.5
Q ss_pred CCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHC---CCcccEEEecCCCChHHHHHHHhcc
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYDK 527 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l---~f~~~~~~~~~~~~~~~~i~~l~~~ 527 (771)
+.++++|++. +.++||.+.+.++ .+.|+.+|+++.+++++ |+++++... .|..++..+.+|
T Consensus 42 ~~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~~~~g~~~~~~~~----~~~~~~~~l~~G 105 (292)
T 1xt8_A 42 QNGVVRIGVF--GDKPPFGYVDEKG----------NNQGYDIALAKRIAKELFGDENKVQFVLV----EAANRVEFLKSN 105 (292)
T ss_dssp HHSSEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHHSCTTCEEEEEC----CGGGHHHHHHTT
T ss_pred hCCeEEEEEC--CCCCCeeEECCCC----------CEeeEhHHHHHHHHHHhccCCceEEEEEc----CHHHHHHHHhCC
Confidence 3467999985 3467788875544 78999999999999999 999666543 388999999999
Q ss_pred cccEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCc
Q 004136 528 TYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFR 607 (771)
Q Consensus 528 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 607 (771)
++|++++++..+.+|.+.++|+.|++.....+++++.++
T Consensus 106 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~----------------------------------------- 144 (292)
T 1xt8_A 106 KVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSN----------------------------------------- 144 (292)
T ss_dssp SCSEECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTCC-----------------------------------------
T ss_pred CeeEEeecCCCCcchhcceeeeccceecceEEEEECCCC-----------------------------------------
Confidence 999998888899999999999999999999999988763
Q ss_pred CcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEE
Q 004136 608 GTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVG 687 (771)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g 687 (771)
+++++||. |.++|
T Consensus 145 -----------------------------------------------------------------i~~~~dL~--g~~i~ 157 (292)
T 1xt8_A 145 -----------------------------------------------------------------ITSVEDLK--DKTLL 157 (292)
T ss_dssp -----------------------------------------------------------------CCSSGGGT--TSEEE
T ss_pred -----------------------------------------------------------------CCCHHHhC--CCEEE
Confidence 88999998 89999
Q ss_pred EecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee-eeeeceE-EEEEe
Q 004136 688 CVDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN-TYRFGGL-GFVSN 765 (771)
Q Consensus 688 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~-~~~~~~~-g~~~~ 765 (771)
+..++....++++. .+..++..+.+ .++++++|.+|++|+++.+...+.+++++..+ +++++ .+....+ +++++
T Consensus 158 ~~~g~~~~~~l~~~--~~~~~~~~~~~-~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~ 233 (292)
T 1xt8_A 158 LNKGTTADAYFTQN--YPNIKTLKYDQ-NTETFAALMDKRGDALSHDNTLLFAWVKDHPD-FKMGIKELGNKDVIAPAVK 233 (292)
T ss_dssp EETTSHHHHHHHHH--CTTSEEEEESS-HHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTT-EEEEEEEEEEEEEECCEEE
T ss_pred EeCCCcHHHHHHHh--CCCceEEEcCC-HHHHHHHHHcCCccEEEecHHHHHHHHHhCCC-eEEcccccccCceeEEEEe
Confidence 99999998888774 34456677787 99999999999999999999999999988776 88888 7788888 99999
Q ss_pred cCCCC
Q 004136 766 IIYSH 770 (771)
Q Consensus 766 k~s~~ 770 (771)
|+++.
T Consensus 234 k~~~~ 238 (292)
T 1xt8_A 234 KGDKE 238 (292)
T ss_dssp TTCHH
T ss_pred CCCHH
Confidence 99764
No 66
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.71 E-value=6.5e-17 Score=164.82 Aligned_cols=191 Identities=17% Similarity=0.219 Sum_probs=162.9
Q ss_pred CCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhccccc
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D 530 (771)
..++++|++. +.++||.+.+.++ ++.|+++|+++.+++++|+++++. .. +|.+++..+.+|++|
T Consensus 29 ~~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~--~~--~~~~~~~~l~~g~~D 92 (268)
T 3qax_A 29 RNRIWIVGTN--ATYPPFEYVDAQG----------EVVGFDIDLAKAISEKLGKQLEVR--EF--AFDALILNLKKHRID 92 (268)
T ss_dssp --CEEEEEEC--SCBTTTBEECTTS----------CEESHHHHHHHHHHHHHTCEEEEE--EC--CGGGHHHHHHHTSSS
T ss_pred cCCeEEEEEC--CCCCCceEECCCC----------CEEEEEHHHHHHHHHHhCCeEEEE--ec--CHHHHHHHHhCCCcc
Confidence 3567889884 3456777765555 799999999999999999885554 43 589999999999999
Q ss_pred EEEeeEeeeccceeeeeccccee--eccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcC
Q 004136 531 AAVGDLTILGNRTEYVEFTQPYA--ESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRG 608 (771)
Q Consensus 531 ~~~~~~~~t~~r~~~~~fs~p~~--~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 608 (771)
++++++..+.+|.+.++| .|++ ..+..+++++.+..
T Consensus 93 ~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~~----------------------------------------- 130 (268)
T 3qax_A 93 AILAGMSITPSRQKEIAL-LPYYGDEVQELMVVSKRSLE----------------------------------------- 130 (268)
T ss_dssp EECSCCBCCHHHHTTSEE-EEEECCCBCEEEEEEETTSC-----------------------------------------
T ss_pred EEeecCccCHhHhcceee-ecceecccceEEEEECCCCC-----------------------------------------
Confidence 999889999999999999 9999 89999999887432
Q ss_pred cccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEE
Q 004136 609 TLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGC 688 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~ 688 (771)
|++++||. |.++|+
T Consensus 131 ----------------------------------------------------------------i~~~~dL~--g~~i~~ 144 (268)
T 3qax_A 131 ----------------------------------------------------------------TPVLPLTQ--YSSVAV 144 (268)
T ss_dssp ----------------------------------------------------------------SCCCCGGG--SSCEEE
T ss_pred ----------------------------------------------------------------CCCHHHhC--CCEEEE
Confidence 89999998 889999
Q ss_pred ecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee-eeeece----EEEE
Q 004136 689 VDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN-TYRFGG----LGFV 763 (771)
Q Consensus 689 ~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~-~~~~~~----~g~~ 763 (771)
..++....++.. .+..++..+.+ .++++++|.+|++|+++.+...+.++++++.+ +.+++ .+.... ++++
T Consensus 145 ~~g~~~~~~l~~---~~~~~~~~~~~-~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 219 (268)
T 3qax_A 145 QTGTYQEHYLLS---QPGICVRSFDS-TLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPN-LVATRLELPPECWVLGCGLG 219 (268)
T ss_dssp ETTSHHHHHHHT---STTCCEEEESC-HHHHHHHHHTTSSSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCBCCEEEE
T ss_pred ecCcHHHHHHHh---CCCceEEecCC-HHHHHHHHHcCCCCEEEecHHHHHHHHHhCCC-cEEecCccCcccccccEEEE
Confidence 999999888876 45567778888 99999999999999999999999999988877 88888 777777 9999
Q ss_pred EecCCCC
Q 004136 764 SNIIYSH 770 (771)
Q Consensus 764 ~~k~s~~ 770 (771)
++|+++.
T Consensus 220 ~~k~~~~ 226 (268)
T 3qax_A 220 VAKDRPE 226 (268)
T ss_dssp ECTTCHH
T ss_pred EeCCCHH
Confidence 9999764
No 67
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.70 E-value=1.2e-16 Score=163.35 Aligned_cols=194 Identities=19% Similarity=0.330 Sum_probs=162.3
Q ss_pred CCCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccc
Q 004136 450 SNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTY 529 (771)
Q Consensus 450 ~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~ 529 (771)
...++|+|++. +.++||.+. +++ ++.|+.+||++.+++++|++++++ .. .|..++..|.+|++
T Consensus 39 ~~~~~l~v~~~--~~~~P~~~~-~~g----------~~~G~~~dl~~~i~~~~g~~v~~~--~~--~~~~~~~~l~~G~~ 101 (272)
T 2pvu_A 39 ATKKKVVVGTD--AAFAPFEYM-QKG----------KIVGFDVDLLDAVMKAAGLDYELK--NI--GWDPLFASLQSKEV 101 (272)
T ss_dssp CCCCCEEEEEC--CCBTTTBEE-ETT----------EEESHHHHHHHHHHHHHTCCEEEE--EC--CHHHHHHHHHHTSS
T ss_pred ccCCeEEEEEC--CCCCCeEEe-cCC----------eEEEEHHHHHHHHHHHhCCceEEE--EC--CHHHHHHHHhCCCC
Confidence 45678999995 345677765 344 789999999999999999986555 33 39999999999999
Q ss_pred cEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCc
Q 004136 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGT 609 (771)
Q Consensus 530 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (771)
|++++++..+.+|.+.+.|+.|++.....+++++.++
T Consensus 102 D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~------------------------------------------- 138 (272)
T 2pvu_A 102 DMGISGITITDERKQSYDFSDPYFEATQVILVKQGSP------------------------------------------- 138 (272)
T ss_dssp SEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTCC-------------------------------------------
T ss_pred CEEEeCCcCCHHHHhcCccchhhhccceEEEEECCCC-------------------------------------------
Confidence 9998888899999999999999999999999988764
Q ss_pred ccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEe
Q 004136 610 LKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCV 689 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~ 689 (771)
|++++||. |.++|+.
T Consensus 139 ---------------------------------------------------------------i~~~~dL~--g~~i~~~ 153 (272)
T 2pvu_A 139 ---------------------------------------------------------------VKNALDLK--GKTIGVQ 153 (272)
T ss_dssp ---------------------------------------------------------------CCSGGGGT--TSCEEEE
T ss_pred ---------------------------------------------------------------CCCHHHhC--CCeEEEE
Confidence 78999998 8899999
Q ss_pred cChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCC-ceeEee-e--eeeceEEEEEe
Q 004136 690 DDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCK-KYTAIN-T--YRFGGLGFVSN 765 (771)
Q Consensus 690 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~-~l~~~~-~--~~~~~~g~~~~ 765 (771)
.++....++++..+ ...++..+.+ ..+++++|.+|++|+++.+...+.+++++... .+.+++ . +....++++++
T Consensus 154 ~g~~~~~~l~~~~~-~~~~i~~~~~-~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 231 (272)
T 2pvu_A 154 NATTGQEAAEKLFG-KGPHIKKFET-TVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFP 231 (272)
T ss_dssp TTSHHHHHHHHHHC-SSTTEEEESS-HHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEE
T ss_pred cCchHHHHHHHhcC-CCCeEEEcCC-HHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEe
Confidence 99998888887534 3456777887 99999999999999999999999988877543 377777 4 36778999999
Q ss_pred cCCCCC
Q 004136 766 IIYSHL 771 (771)
Q Consensus 766 k~s~~l 771 (771)
|+ +.|
T Consensus 232 k~-~~l 236 (272)
T 2pvu_A 232 KN-SEL 236 (272)
T ss_dssp TT-CTT
T ss_pred CC-HHH
Confidence 98 654
No 68
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.70 E-value=9.5e-17 Score=165.93 Aligned_cols=191 Identities=13% Similarity=0.210 Sum_probs=164.0
Q ss_pred CCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHC---CCcccEEEecCCCChHHHHHHHhccc
Q 004136 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYDKT 528 (771)
Q Consensus 452 ~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l---~f~~~~~~~~~~~~~~~~i~~l~~~~ 528 (771)
.++|+|++. +.++||.+.++++ ++.|+.+|+++.+++++ |+++++... .|..++..|.+|+
T Consensus 54 ~~~l~vg~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~~~~g~~v~~~~~----~~~~~~~~l~~G~ 117 (291)
T 2yjp_A 54 KGVIRIGVF--GDKPPFGYVDANG----------KNQGFDVEIAKDLAKDLLGSPDKVEFVLT----EAANRVEYVRSGK 117 (291)
T ss_dssp HTCEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHHSCGGGEEEEEC----CGGGHHHHHHTTS
T ss_pred CCeEEEEEc--CCCCCceEECCCC----------CEeehHHHHHHHHHHHhccCCceEEEEEc----cHHHHHHHHhCCC
Confidence 467999985 3467788876555 78999999999999999 988655543 3889999999999
Q ss_pred ccEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcC
Q 004136 529 YDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRG 608 (771)
Q Consensus 529 ~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 608 (771)
+|++++++..+.+|.+.++|+.|++.....+++++.+.
T Consensus 118 ~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~~------------------------------------------ 155 (291)
T 2yjp_A 118 VDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNKP------------------------------------------ 155 (291)
T ss_dssp CSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTSC------------------------------------------
T ss_pred eeEEEeCCCCChHHHccceeccCeeecceEEEEeCCCC------------------------------------------
Confidence 99999888899999999999999999999999988773
Q ss_pred cccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEE
Q 004136 609 TLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGC 688 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~ 688 (771)
|++++||. |.+||+
T Consensus 156 ----------------------------------------------------------------i~sl~dL~--gk~v~~ 169 (291)
T 2yjp_A 156 ----------------------------------------------------------------ITDMAQLK--DQTLLV 169 (291)
T ss_dssp ----------------------------------------------------------------CCSGGGGT--TSEEEE
T ss_pred ----------------------------------------------------------------CCCHHHhC--CCEEEE
Confidence 89999998 999999
Q ss_pred ecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee-eeeeceE-EEEEec
Q 004136 689 VDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN-TYRFGGL-GFVSNI 766 (771)
Q Consensus 689 ~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~-~~~~~~~-g~~~~k 766 (771)
..++....+++.. .+..+++.+.+ ..+++++|.+|++|+++.+...+.+++++..+ +++++ .+....+ +++++|
T Consensus 170 ~~g~~~~~~l~~~--~~~~~~~~~~~-~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k 245 (291)
T 2yjp_A 170 NKGTTADAFFTKS--HPEVKLLKFDQ-NTETFDALKDGRGVALAHDNALLWAWAKENPN-FEVAIGNLGPAEFIAPAVQK 245 (291)
T ss_dssp ETTSHHHHHHHHH--CTTSEEEEESS-HHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTT-EEEEECCSSSCEEECCEEET
T ss_pred ecCCcHHHHHHHh--CCCceEEEeCC-HHHHHHHHHcCCccEEEecHHHHHHHHHhCCC-eEEcCCcccCCcceEEEEeC
Confidence 9999998888875 34456777787 99999999999999999999999999888776 88888 7777888 999999
Q ss_pred CCCC
Q 004136 767 IYSH 770 (771)
Q Consensus 767 ~s~~ 770 (771)
++|.
T Consensus 246 ~~~~ 249 (291)
T 2yjp_A 246 GNAD 249 (291)
T ss_dssp TCHH
T ss_pred CCHH
Confidence 8764
No 69
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.69 E-value=1.9e-16 Score=156.88 Aligned_cols=191 Identities=16% Similarity=0.291 Sum_probs=155.4
Q ss_pred CceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEE
Q 004136 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAA 532 (771)
Q Consensus 453 ~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~ 532 (771)
++|+|++.. ++||.+. +++ ++.|+++|+++.+++++|+++++...+ .|.+++..|.+|++|++
T Consensus 3 ~~l~v~~~~---~~P~~~~-~~g----------~~~G~~~dl~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~g~~D~~ 65 (228)
T 2pyy_A 3 QPLLVATRV---IPPFVLS-NKG----------ELSGFSIDLWRSIATQIGIESKLIEYS---SVPELISAIKDNKVNLG 65 (228)
T ss_dssp -CEEEEECC---BTTTBBC-C-------------CBSHHHHHHHHHHHHHTCCEEEEECS---SHHHHHHHHHTTSCSEE
T ss_pred ceEEEEecC---CCCeEEe-cCC----------ceEEEeHHHHHHHHHHhCCcEEEEEcC---CHHHHHHHHHCCCcCEE
Confidence 578999875 4566664 444 789999999999999999997666554 58999999999999999
Q ss_pred EeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCcccc
Q 004136 533 VGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTLKD 612 (771)
Q Consensus 533 ~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (771)
++++..+.+|.+.+.|+.|++.....+++++.++.
T Consensus 66 ~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~--------------------------------------------- 100 (228)
T 2pyy_A 66 IAAISITAEREQNFDFSLPIFASGLQIMVRNLESG--------------------------------------------- 100 (228)
T ss_dssp CSSCBCCHHHHHHSEECSCSEEEEEEEEEEC-------------------------------------------------
T ss_pred EeccccCHHHHccceecccchhcceEEEEECCccc---------------------------------------------
Confidence 88888999999999999999999999999887631
Q ss_pred hHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEecCh
Q 004136 613 QISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCVDDS 692 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~~~s 692 (771)
...+++++||. |.++|+..++
T Consensus 101 ---------------------------------------------------------~~~~~~~~dL~--g~~i~~~~g~ 121 (228)
T 2pyy_A 101 ---------------------------------------------------------TGDIRSIDDLP--GKVVATTAGS 121 (228)
T ss_dssp ----------------------------------------------------------CCCCSGGGCT--TCEEEEETTS
T ss_pred ---------------------------------------------------------cCCcCCHHHcC--CCeEEEEcCc
Confidence 01288999998 8999999999
Q ss_pred HHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcC-CceeEee-eeeeceEEEEEecCCC
Q 004136 693 FVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYC-KKYTAIN-TYRFGGLGFVSNIIYS 769 (771)
Q Consensus 693 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c-~~l~~~~-~~~~~~~g~~~~k~s~ 769 (771)
....++++ . ..++..+.+ ..+++++|.+|++|+++.+...+.+++++.. ..+.+++ .+....++++++|+++
T Consensus 122 ~~~~~l~~-~---~~~~~~~~~-~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (228)
T 2pyy_A 122 TAATYLRE-H---HISVLEVPK-IEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSP 195 (228)
T ss_dssp HHHHHHHH-T---TCEEEEESS-HHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCT
T ss_pred HHHHHHHH-c---CCceEecCC-HHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChH
Confidence 98888876 2 235667777 9999999999999999999999998887754 2488888 7778899999999864
No 70
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.69 E-value=8.7e-17 Score=164.00 Aligned_cols=194 Identities=16% Similarity=0.330 Sum_probs=161.9
Q ss_pred CCCceEEEeccCCCccceEE---eccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcc
Q 004136 451 NQEPMRIGVPTRTFFEKFVV---IKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDK 527 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~---~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~ 527 (771)
..++++|++. +.++||.+ .+.++ ++.|+++|+++.+++++|++++++ .. +|..++..+.+|
T Consensus 37 ~~~~l~v~~~--~~~~P~~~~~~~~~~g----------~~~G~~~dl~~~~~~~~g~~~~~~--~~--~~~~~~~~l~~g 100 (269)
T 4i62_A 37 SKGKLVVALN--PDFAPFEYQKVVDGKN----------QIVGSDIELAKAIATELGVELELS--PM--SFDNVLASVQSG 100 (269)
T ss_dssp HHTEEEEEEC--SCBTTTBEEEEETTEE----------EEESHHHHHHHHHHHHHTCEEEEE--EC--CHHHHHHHHHTT
T ss_pred cCCeEEEEec--CCCCCceeecccCCCC----------cEeeecHHHHHHHHHHHCCceEEE--Ec--CHHHHHHHHhCC
Confidence 3457899985 34567776 44434 899999999999999999885555 43 599999999999
Q ss_pred cccEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCc
Q 004136 528 TYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFR 607 (771)
Q Consensus 528 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 607 (771)
++|++++++..+.+|.+.+.|+.|++.....+++++.+..
T Consensus 101 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~---------------------------------------- 140 (269)
T 4i62_A 101 KADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLA---------------------------------------- 140 (269)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGTT----------------------------------------
T ss_pred CccEEecCCcCCHhHhhceecccchhhcceEEEEECCccc----------------------------------------
Confidence 9999998899999999999999999999999999887532
Q ss_pred CcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEE
Q 004136 608 GTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVG 687 (771)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g 687 (771)
.|++++||. |.++|
T Consensus 141 ----------------------------------------------------------------~i~~~~dL~--g~~i~ 154 (269)
T 4i62_A 141 ----------------------------------------------------------------TYQSVNDLA--QKKVG 154 (269)
T ss_dssp ----------------------------------------------------------------TCSSGGGGC---CEEE
T ss_pred ----------------------------------------------------------------cccCHHHhC--CCeEE
Confidence 189999998 89999
Q ss_pred EecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee-eee---eceEEEE
Q 004136 688 CVDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN-TYR---FGGLGFV 763 (771)
Q Consensus 688 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~-~~~---~~~~g~~ 763 (771)
+..++....++.+. .+..++..+.+ .++++++|.+|++|+++.+...+.++++++.+ +.+.. .+. ..+++++
T Consensus 155 ~~~g~~~~~~l~~~--~~~~~~~~~~~-~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 230 (269)
T 4i62_A 155 AQKGSIQETMAKDL--LQNSSLVSLPK-NGNLITDLKSGQVDAVIFEEPVAKGFVENNPD-LAIADLNFEKEQDDSYAVA 230 (269)
T ss_dssp EETTSHHHHHHHHH--CTTSEEEEESC-HHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTT-EEECSCCCCC-CCCEECCE
T ss_pred EecCchHHHHHHHh--CCCCcEEecCC-HHHHHHHHHcCCCCEEEeChHHHHHHHHhCCC-CeEEeeccCCCcccceEEE
Confidence 99999999998875 44567778888 99999999999999999999999999888776 66655 433 6789999
Q ss_pred EecCCCC
Q 004136 764 SNIIYSH 770 (771)
Q Consensus 764 ~~k~s~~ 770 (771)
++|++|.
T Consensus 231 ~~~~~~~ 237 (269)
T 4i62_A 231 MKKDSKE 237 (269)
T ss_dssp EESSCHH
T ss_pred EeCCCHH
Confidence 9999864
No 71
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.68 E-value=1.4e-16 Score=164.28 Aligned_cols=196 Identities=13% Similarity=0.161 Sum_probs=161.2
Q ss_pred CCCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHH----CC---CcccEEEecCCCChHHHHH
Q 004136 450 SNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDH----LN---YDLPYEFVPHDGVYDDLIN 522 (771)
Q Consensus 450 ~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~----l~---f~~~~~~~~~~~~~~~~i~ 522 (771)
...++|+|++.. .++||.+.+.++ ++.|+++|+++.+++. +| +++ ++.+. .|..++.
T Consensus 14 ~~~~~l~v~~~~--~~~P~~~~~~~g----------~~~G~~~dl~~~ia~~l~~~~G~~~~~v--~~~~~--~~~~~~~ 77 (287)
T 2vha_A 14 AKNGVIVVGHRE--SSVPFSYYDNQQ----------KVVGYSQDYSNAIVEAVKKKLNKPDLQV--KLIPI--TSQNRIP 77 (287)
T ss_dssp HHHTEEEEEECS--EETTTEEECSSS----------CEESHHHHHHHHHHHHHHHHTTCTTCEE--EEEEC--CTTTHHH
T ss_pred HhCCeEEEEEcC--CCCCceEECCCC----------CcccccHHHHHHHHHHHHHhcCCCCceE--EEEEC--CHHHHHH
Confidence 456789999853 466788875555 7899999999999976 56 664 44443 4788999
Q ss_pred HHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhcccc
Q 004136 523 GVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQS 602 (771)
Q Consensus 523 ~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~ 602 (771)
.+.+|++|+++++++.+.+|.+.++||.|++..+..+++++.++
T Consensus 78 ~l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~------------------------------------ 121 (287)
T 2vha_A 78 LLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGD------------------------------------ 121 (287)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTSS------------------------------------
T ss_pred HHHCCCeeEEeccccCCcchhhcccccceeeecceEEEEECCCC------------------------------------
Confidence 99999999998888999999999999999999999999988763
Q ss_pred CccCcCcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhC
Q 004136 603 NPEFRGTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSG 682 (771)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~ 682 (771)
|++++||.
T Consensus 122 ----------------------------------------------------------------------i~sl~dL~-- 129 (287)
T 2vha_A 122 ----------------------------------------------------------------------IKDFADLK-- 129 (287)
T ss_dssp ----------------------------------------------------------------------CCSGGGGT--
T ss_pred ----------------------------------------------------------------------CCCHHHcC--
Confidence 88999998
Q ss_pred CceEEEecChHHHHHHHHhcC--CCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcC--CceeEee-eeee
Q 004136 683 NLKVGCVDDSFVKKYLEEVLG--FRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYC--KKYTAIN-TYRF 757 (771)
Q Consensus 683 ~~~~g~~~~s~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c--~~l~~~~-~~~~ 757 (771)
|.+||+..++....++++... ....+++.+.+ .++++++|.+|++|+++.+...+.+++++.. ..+.+++ .+..
T Consensus 130 g~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (287)
T 2vha_A 130 GKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKD-HGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQ 208 (287)
T ss_dssp TCEEEEETTSHHHHHHHHHHHHTTCCCEEEEESS-HHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCE
T ss_pred CCEEEEeCCCcHHHHHHHHhhccCCCceEEEcCC-HHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCcccc
Confidence 889999999988888776321 12345667887 9999999999999999999999998887743 3488888 7778
Q ss_pred ceEEEEEecCCCC
Q 004136 758 GGLGFVSNIIYSH 770 (771)
Q Consensus 758 ~~~g~~~~k~s~~ 770 (771)
..++++++|+++.
T Consensus 209 ~~~~~~~~k~~~~ 221 (287)
T 2vha_A 209 EAYGCMLRKDDPQ 221 (287)
T ss_dssp EEEEEEECTTCHH
T ss_pred CceEEEEeCCCHH
Confidence 8999999999753
No 72
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.67 E-value=3.1e-16 Score=161.27 Aligned_cols=191 Identities=16% Similarity=0.277 Sum_probs=160.4
Q ss_pred CCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhccccc
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D 530 (771)
..++|+|++.. .++||.+.+.++ .+.|+.+|+++.+++++|+++++. .. .|..++..|.+|++|
T Consensus 55 ~~~~l~v~~~~--~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~G~~v~~~--~~--~~~~~~~~l~~G~~D 118 (283)
T 2yln_A 55 NKGTVTVGTEG--TYAPFTYHDKDG----------KLTGYDVEVTRAVAEKLGVKVEFK--ET--QWDSMMAGLKAGRFD 118 (283)
T ss_dssp HTCEEEEEECS--EETTTEEECTTS----------CEESHHHHHHHHHHHHHTCEEEEE--EC--CGGGHHHHHHHTSCS
T ss_pred cCCeEEEEECC--CCCCeeEECCCC----------CEeeehHHHHHHHHHHcCCceEEE--EC--CHHHHHHHHHCCCcC
Confidence 44679999853 467888876555 789999999999999999885554 43 389999999999999
Q ss_pred EEEeeEee-eccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCc
Q 004136 531 AAVGDLTI-LGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGT 609 (771)
Q Consensus 531 ~~~~~~~~-t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (771)
++++++.. +.+|.+.++|+.||+.....+++++.++
T Consensus 119 ~~~~~~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~~------------------------------------------- 155 (283)
T 2yln_A 119 VVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSN------------------------------------------- 155 (283)
T ss_dssp EECSSCCCCSHHHHHHEEECSCSEEECEEEEEETTCS-------------------------------------------
T ss_pred EEEecCccCChhhhcceEeccCeeeecEEEEEECCCC-------------------------------------------
Confidence 99988888 9999999999999999999999988764
Q ss_pred ccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEe
Q 004136 610 LKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCV 689 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~ 689 (771)
|++++||. |.+||+.
T Consensus 156 ---------------------------------------------------------------i~s~~dL~--G~~v~v~ 170 (283)
T 2yln_A 156 ---------------------------------------------------------------IKSIADIK--GVKTAQS 170 (283)
T ss_dssp ---------------------------------------------------------------CCSGGGCT--TSEEEEC
T ss_pred ---------------------------------------------------------------CCCHHHhC--CCEEEEe
Confidence 88999996 9999999
Q ss_pred cChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCC-ceeEee--eee-eceEEEEEe
Q 004136 690 DDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCK-KYTAIN--TYR-FGGLGFVSN 765 (771)
Q Consensus 690 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~-~l~~~~--~~~-~~~~g~~~~ 765 (771)
.++....++++. ..++..+.+ ..+++++|.+|++|+++.+...+.+++++... .+++++ .+. ...++++++
T Consensus 171 ~g~~~~~~l~~~----~~~~~~~~~-~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~ 245 (283)
T 2yln_A 171 LTSNYGEKAKAA----GAQLVPVDG-LAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVN 245 (283)
T ss_dssp TTSHHHHHHHHT----TCEEEECSS-HHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEE
T ss_pred cCchHHHHHHHc----CCeEEEeCC-HHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEe
Confidence 999988888763 345667777 99999999999999999999999988877653 377776 555 678999999
Q ss_pred cCCCC
Q 004136 766 IIYSH 770 (771)
Q Consensus 766 k~s~~ 770 (771)
|+++.
T Consensus 246 k~~~~ 250 (283)
T 2yln_A 246 KGNDE 250 (283)
T ss_dssp SSCHH
T ss_pred CCCHH
Confidence 98753
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.56 E-value=2.2e-15 Score=152.57 Aligned_cols=191 Identities=14% Similarity=0.292 Sum_probs=154.4
Q ss_pred CCCceEEEeccCCCccceEEecc-CCCCCCCCCCCcccccchHHHHHHHHHHC---CCcccEEEecCCCChHHHHHHHhc
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKD-DPLNGNSNDKNLRYDGFSIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYD 526 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~-~~~~~~~g~~~~~~~G~~~~l~~~~a~~l---~f~~~~~~~~~~~~~~~~i~~l~~ 526 (771)
..++++|++.. .++||.+.+. ++ .+.|+++|+++.+++++ |++++++.. .|..++..+.+
T Consensus 36 ~~~~l~vg~~~--~~~p~~~~~~~~g----------~~~G~~~~l~~~~~~~~~~pg~~v~~~~~----~~~~~~~~l~~ 99 (259)
T 2v25_A 36 SKGQLIVGVKN--DVPHYALLDQATG----------EIKGFEVDVAKLLAKSILGDDKKIKLVAV----NAKTRGPLLDN 99 (259)
T ss_dssp HHTCEEEEECS--EETTTEEEETTTT----------EEESHHHHHHHHHHHHHHSCTTSEEEEEC----CTTTHHHHHHT
T ss_pred hCCeEEEEECC--CCCCeEEEECCCC----------eEEEeeHHHHHHHHHHhcCCCcceEEEEc----CHHHHHHHHhC
Confidence 45679999853 4567877652 44 79999999999999999 988655543 47889999999
Q ss_pred ccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccC
Q 004136 527 KTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEF 606 (771)
Q Consensus 527 ~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 606 (771)
|++|++++++..+.+|.+.++|+.|++.....+++++.++
T Consensus 100 g~~D~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---------------------------------------- 139 (259)
T 2v25_A 100 GSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKK---------------------------------------- 139 (259)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGGC----------------------------------------
T ss_pred CCCCEEEecCccCHHHHhcCcccccceeCceEEEEeCCCC----------------------------------------
Confidence 9999998888889999999999999999999999987653
Q ss_pred cCcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceE
Q 004136 607 RGTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKV 686 (771)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~ 686 (771)
+++++||. +.++
T Consensus 140 ------------------------------------------------------------------i~~~~dL~--g~~i 151 (259)
T 2v25_A 140 ------------------------------------------------------------------YKSLADMK--GANI 151 (259)
T ss_dssp ------------------------------------------------------------------CCSGGGCT--TCEE
T ss_pred ------------------------------------------------------------------CCCHHHhC--CCEE
Confidence 78999998 8899
Q ss_pred EEecChHHHHHHHHh---cCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee-eeeeceEEE
Q 004136 687 GCVDDSFVKKYLEEV---LGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN-TYRFGGLGF 762 (771)
Q Consensus 687 g~~~~s~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~-~~~~~~~g~ 762 (771)
|+..++....++++. .+. ..++..+.+ ..+.+++|.+|++|+++.+...+.++++++.+ +++ .+....+++
T Consensus 152 ~~~~g~~~~~~~~~~~~~~g~-~~~~~~~~~-~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 226 (259)
T 2v25_A 152 GVAQAATTKKAIGEAAKKIGI-DVKFSEFPD-YPSIKAALDAKRVDAFSVDKSILLGYVDDKSE---ILPDSFEPQSYGI 226 (259)
T ss_dssp EEETTCSHHHHHHHHHHHTTC-CCEEEEESS-HHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEE---ECSCCCSEEEECC
T ss_pred EEecCCchHHHHHHHHHhcCC-ceeEEEeCC-HHHHHHHHHcCCCcEEEecHHHHHHHHHhCCC---ccccccccceeEE
Confidence 999888877766553 122 124566777 99999999999999999999888877766543 456 677788999
Q ss_pred EEecCCCC
Q 004136 763 VSNIIYSH 770 (771)
Q Consensus 763 ~~~k~s~~ 770 (771)
+++|+++.
T Consensus 227 ~~~k~~~~ 234 (259)
T 2v25_A 227 VTKKDDPA 234 (259)
T ss_dssp EEETTCHH
T ss_pred EEcCCCHH
Confidence 99998753
No 74
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.97 E-value=1.5e-09 Score=104.34 Aligned_cols=158 Identities=14% Similarity=0.082 Sum_probs=124.8
Q ss_pred ccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeecc------ceeeeecccceeeccEEE
Q 004136 486 RYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGN------RTEYVEFTQPYAESGFSM 559 (771)
Q Consensus 486 ~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~------r~~~~~fs~p~~~~~~~~ 559 (771)
+++|+.--|-+.+. |+++++.... .+++.+..|++|++||++++++.+++ |.+.++||.|++.+...+
T Consensus 29 ~yeGlatgl~~~f~---gi~~~i~~mr---g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~yYv~~h~l 102 (231)
T 2ozz_A 29 LYEGLASGLKAQFD---GIPFYYAHMR---GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQL 102 (231)
T ss_dssp HHHHHHHHHHHTTT---TSCEEEEECS---CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSSSCCEEE
T ss_pred hhhHHHHHHHHHhc---CCcEEEEEcc---ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCccccCeEE
Confidence 89999999888884 7775565554 48999999999999999999999999 999999999999888889
Q ss_pred EEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCcccchHHHHHHHHHHHhhccCcccccchhhH
Q 004136 560 IVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSHRANIQSNLTR 639 (771)
Q Consensus 560 ~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~R 639 (771)
+++++....
T Consensus 103 i~~~~~~~~----------------------------------------------------------------------- 111 (231)
T 2ozz_A 103 ICRKGESGN----------------------------------------------------------------------- 111 (231)
T ss_dssp EEETTCGGG-----------------------------------------------------------------------
T ss_pred EEeCCCccc-----------------------------------------------------------------------
Confidence 888876221
Q ss_pred HHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEecChHHHHHHHHhcCCCCCCcccC-CCCHHH
Q 004136 640 VVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCVDDSFVKKYLEEVLGFRSGNIVPF-GNTEAN 718 (771)
Q Consensus 640 l~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~~~s~~~~~l~~~~~~~~~~~~~~-~~~~~~ 718 (771)
| ++||+..+|..+..+.+... ...++..+ .+ ..+
T Consensus 112 ---------------------------------i----------krVGvd~gS~dq~~lt~~~~-~g~~Ve~ve~~-y~~ 146 (231)
T 2ozz_A 112 ---------------------------------V----------KRVGLDSRSADQKIMTDVFF-GDSDVERVDLS-YHE 146 (231)
T ss_dssp ---------------------------------C----------CEEEECTTCHHHHHHHHHHH-TTSCCEEEECC-HHH
T ss_pred ---------------------------------c----------EEEEecCCChhHHHHHhhhc-CCCeEEEEECC-HHH
Confidence 3 69999999999999888533 44556677 55 999
Q ss_pred HHHHHHcCCceEEEe--cchhHHHHHHhcCCceeEee-ee-----eeceEEEEEecCCCC
Q 004136 719 YIQKFENNTIDSLFL--ERPYEKVFLDKYCKKYTAIN-TY-----RFGGLGFVSNIIYSH 770 (771)
Q Consensus 719 ~~~~v~~~~~~a~i~--~~~~~~~~~~~~c~~l~~~~-~~-----~~~~~g~~~~k~s~~ 770 (771)
++++|++|++||.+. |.+... .+.+ +.... .. ......++++||++.
T Consensus 147 ~i~~L~~G~IDA~Iwn~d~~~a~----~~~~-l~~~~l~~~~~~~~~~eavI~v~k~n~~ 201 (231)
T 2ozz_A 147 SLQRIVKGDVDAVIWNVVAENEL----TMLG-LEATPLTDDPRFLQATEAVVLTRVDDYP 201 (231)
T ss_dssp HHHHHHHTSCCEEEEEC-CHHHH----HHTT-EEEEECCSCHHHHHTTCEEEEEETTCHH
T ss_pred HHHHHHcCCccEEEEcCcchhhh----cCCC-cceeccccccccccCCceEEEEECCCHH
Confidence 999999999999999 777755 3344 44444 33 234555999999754
No 75
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.47 E-value=4.7e-06 Score=84.36 Aligned_cols=210 Identities=11% Similarity=0.043 Sum_probs=142.6
Q ss_pred EEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCC-eEEEEcCC-chHhHH
Q 004136 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEK-VKVIAGME-TWEETA 111 (771)
Q Consensus 35 I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~-v~aviGp~-~s~~~~ 111 (771)
++||+++|.. .+.......+++.+.++. |+++.+...++..++....+....++ .++ +.+||-.. .+....
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~vdgii~~~~~~~~~~ 74 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA-----GVTLLHRSTKDDGDIAGQIQILSYHL-SQAPPDALILAPNSAEDLT 74 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH-----TCEEEECCCSSTTCHHHHHHHHHHHH-HHSCCSEEEECCSSTTTTH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEEEECCCCCCCHHHHHHHHHHHH-HhCCCCEEEEeCCCHHHHH
Confidence 5899999865 455667778888777775 56776665557788888888889998 556 88777533 334445
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHc----CCeEEEEEEEeCC--CCCCcch
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY----NWRRVAAIYEDNV--YGGDSGK 185 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~----~w~~v~ii~~~~~--~g~~~~~ 185 (771)
.....+...++|+|..... .+. . +....+..++...++.+++++... |.++++++..... .. ...
T Consensus 75 ~~~~~~~~~~ipvV~~~~~--~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~--~~R 145 (276)
T 3ksm_A 75 PSVAQYRARNIPVLVVDSD--LAG---D--AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNAST--DQR 145 (276)
T ss_dssp HHHHHHHHTTCCEEEESSC--CSS---S--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHH--HHH
T ss_pred HHHHHHHHCCCcEEEEecC--CCC---C--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhH--HHH
Confidence 5556677789999988765 221 1 223456788888999999999777 8999999986533 23 456
Q ss_pred HHHHHHHHhcc-CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCCCe
Q 004136 186 LALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (771)
Q Consensus 186 ~~~l~~~~~~~-g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~ 262 (771)
.+.+++.+++. | +++..... ... + .....+.+.++.+. ++++|+. .+...+..+++++++.|+ +++.
T Consensus 146 ~~gf~~~l~~~~~-~~~~~~~~--~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~-p~di 215 (276)
T 3ksm_A 146 EQGFLDVLRKHDK-IRIIAAPY--AGD---D-RGAARSEMLRLLKETPTIDGLFT--PNESTTIGALVAIRQSGM-SKQF 215 (276)
T ss_dssp HHHHHHHHTTCTT-EEEEECCB--CCS---S-HHHHHHHHHHHHHHCSCCCEEEC--CSHHHHHHHHHHHHHTTC-TTSS
T ss_pred HHHHHHHHHhCCC-cEEEEEec--CCC---c-HHHHHHHHHHHHHhCCCceEEEE--CCchhhhHHHHHHHHcCC-CCCe
Confidence 78899999888 8 77653221 111 1 13344455555443 4566544 667778889999999998 4445
Q ss_pred EEEeeCc
Q 004136 263 VWIVTNT 269 (771)
Q Consensus 263 ~~i~~~~ 269 (771)
..++.+.
T Consensus 216 ~vig~d~ 222 (276)
T 3ksm_A 216 GFIGFDQ 222 (276)
T ss_dssp EEEEESC
T ss_pred EEEEeCC
Confidence 5555544
No 76
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.46 E-value=7.8e-06 Score=84.57 Aligned_cols=209 Identities=11% Similarity=0.030 Sum_probs=137.0
Q ss_pred EEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-CCchHhHHHH
Q 004136 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (771)
Q Consensus 35 I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~s~~~~~v 113 (771)
++||++.|...........+++.+.++. |+++.+.. .+..++....+.+.+++ .+++.+||. |..+......
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~~~-~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~~ 74 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL-----GVDTKFFV-PQKEDINAQLQMLESFI-AEGVNGIAIAPSDPTAVIPT 74 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH-----TCEEEEEC-CSSSCHHHHHHHHHHHH-HTTCSEEEECCSSTTTTHHH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc-----CCEEEEEC-CCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChHHHHHH
Confidence 6899999876335556677777777764 45554432 24568888888888888 678887764 4444433344
Q ss_pred HHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHc--CCeEEEEEEEeCC--CCCCcchHHHH
Q 004136 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV--YGGDSGKLALL 189 (771)
Q Consensus 114 ~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~--~w~~v~ii~~~~~--~g~~~~~~~~l 189 (771)
...+...++|+|..... .+. .+.+..+..++...++.+++++... |.++|++|..... .. ....+.|
T Consensus 75 ~~~~~~~~iPvV~~~~~--~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~--~~R~~gf 145 (313)
T 2h3h_A 75 IKKALEMGIPVVTLDTD--SPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNS--LQRIQGF 145 (313)
T ss_dssp HHHHHHTTCCEEEESSC--CTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHH--HHHHHHH
T ss_pred HHHHHHCCCeEEEeCCC--CCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccH--HHHHHHH
Confidence 45556689999988755 221 1233456788888889999998776 8899999987532 33 4567889
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEee
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (771)
++.+++.| +++......... ..+....+.++.+. ++++|+. .+...+..+++++++.|.. .+...++.
T Consensus 146 ~~~l~~~g-~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~G~p-~dv~vvg~ 215 (313)
T 2h3h_A 146 KDAIKDSE-IEIVDILNDEED------GARAVSLAEAALNAHPDLDAFFG--VYAYNGPAQALVVKNAGKV-GKVKIVCF 215 (313)
T ss_dssp HHHHTTSS-CEEEEEEECSSC------HHHHHHHHHHHHHHCTTCCEEEE--CSTTHHHHHHHHHHHTTCT-TTSEEEEE
T ss_pred HHHhcCCC-CEEEEeecCCCC------HHHHHHHHHHHHHHCcCceEEEE--cCCCccHHHHHHHHHcCCC-CCeEEEEe
Confidence 99999999 877643321111 13344555555543 4577766 4556777899999999953 33444544
Q ss_pred Cc
Q 004136 268 NT 269 (771)
Q Consensus 268 ~~ 269 (771)
+.
T Consensus 216 d~ 217 (313)
T 2h3h_A 216 DT 217 (313)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 77
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.44 E-value=1.9e-06 Score=88.88 Aligned_cols=166 Identities=13% Similarity=0.051 Sum_probs=108.1
Q ss_pred HHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEee-Eeeecc--ceeeeeccc-------ceeeccEEEEE
Q 004136 492 IELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGD-LTILGN--RTEYVEFTQ-------PYAESGFSMIV 561 (771)
Q Consensus 492 ~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~-~~~t~~--r~~~~~fs~-------p~~~~~~~~~v 561 (771)
.+|++.|++++|.++++... .+|++++..|.+|++|+++.+ ...... |.....|+. |++. ..+++
T Consensus 24 ~~l~~~l~k~lG~~ve~~~~---~~~~~~i~al~~G~vDi~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~--~~lvv 98 (310)
T 3n5l_A 24 EPFLKDMSQQTGYQVKAFFA---PDYAGIIQGMRFDKVDIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYW--SLLIA 98 (310)
T ss_dssp HHHHHHHHHHHSSEEEEECC---SSHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEE--EEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeC---CCHHHHHHHHHcCCCCEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceE--EEEEE
Confidence 58999999999988555432 269999999999999999755 333332 333334433 3322 35666
Q ss_pred ecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCcccchHHHHHHHHHHHhhccCcccccchhhHHH
Q 004136 562 PAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSHRANIQSNLTRVV 641 (771)
Q Consensus 562 ~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~ 641 (771)
++.++
T Consensus 99 ~~ds~--------------------------------------------------------------------------- 103 (310)
T 3n5l_A 99 NKDSK--------------------------------------------------------------------------- 103 (310)
T ss_dssp ETTCS---------------------------------------------------------------------------
T ss_pred ECCCC---------------------------------------------------------------------------
Confidence 66543
Q ss_pred HHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhh--CCceEEE-ecChHHHHH-----HHHhcCCCC---CCcc
Q 004136 642 VVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKS--GNLKVGC-VDDSFVKKY-----LEEVLGFRS---GNIV 710 (771)
Q Consensus 642 ~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~--~~~~~g~-~~~s~~~~~-----l~~~~~~~~---~~~~ 710 (771)
|++++||.+ .+.++++ ..++....+ +....+... -+.+
T Consensus 104 -------------------------------i~sl~DL~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v 152 (310)
T 3n5l_A 104 -------------------------------IDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRT 152 (310)
T ss_dssp -------------------------------CCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEE
T ss_pred -------------------------------CCCHHHHhhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhcccc
Confidence 899999931 2678886 333322111 211112211 1122
Q ss_pred cCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcC---CceeEee-eeeeceEEEEEecCCC
Q 004136 711 PFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYC---KKYTAIN-TYRFGGLGFVSNIIYS 769 (771)
Q Consensus 711 ~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c---~~l~~~~-~~~~~~~g~~~~k~s~ 769 (771)
|..+..+.+.+|..|++|+.+.+...+..++++.. ..++++. ......+++++||+-|
T Consensus 153 -~~g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~ 214 (310)
T 3n5l_A 153 -LNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLS 214 (310)
T ss_dssp -EECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSC
T ss_pred -ccCCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCCC
Confidence 33327789999999999999999999888877642 3488887 5556678999999843
No 78
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.43 E-value=1.8e-05 Score=82.49 Aligned_cols=213 Identities=10% Similarity=-0.014 Sum_probs=138.8
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCC--eEEEEcC-CchH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEK--VKVIAGM-ETWE 108 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~--v~aviGp-~~s~ 108 (771)
.+.+||+++|.. .+.......+++.+.++. |+++ .+.++..++....+....++ +++ +.+||.. ....
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~l--~~~~~~~~~~~~~~~i~~l~-~~~~~vdgiIi~~~~~~ 75 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV-----GLPY--VPLTTEGSSEKGIADIRALL-QKTGGNLVLNVDPNDSA 75 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH-----TCCE--EEEECTTCHHHHHHHHHHHH-HHTTTCEEEEECCSSHH
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc-----CCEE--EEecCCCCHHHHHHHHHHHH-HCCCCCCEEEEeCCCHH
Confidence 457899999854 444556667777776664 4444 44567778887777788888 566 9987753 3333
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCccCCCC--ceEEEeecCcHHHHHHHHHHHHH--cCCeEEEEEEEeCC--CCCC
Q 004136 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRW--PYLIRMASNDSEQMKCIADLARK--YNWRRVAAIYEDNV--YGGD 182 (771)
Q Consensus 109 ~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~--p~~fr~~p~~~~~~~a~~~~l~~--~~w~~v~ii~~~~~--~g~~ 182 (771)
........+...++|+|..... .+......+ +.+..+..++...++.++++|.. .|.++|++|..... ..
T Consensus 76 ~~~~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~-- 151 (332)
T 2rjo_A 76 DARVIVEACSKAGAYVTTIWNK--PKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPA-- 151 (332)
T ss_dssp HHHHHHHHHHHHTCEEEEESCC--CTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHH--
T ss_pred HHHHHHHHHHHCCCeEEEECCC--CCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccH--
Confidence 3334445556679999988755 232111111 35667888988899999999877 68999999986533 23
Q ss_pred cchHHHHHHHHhcc-CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC---CceEEEEEecChhHHHHHHHHHHHcCCC
Q 004136 183 SGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (771)
Q Consensus 183 ~~~~~~l~~~~~~~-g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~---~~~vIv~~~~~~~~~~~il~~a~~~g~~ 258 (771)
....+.|++.+++. | +++..... .... ..+....+.++.+. ++++|+. .+...+..+++++++.|+.
T Consensus 152 ~~R~~Gf~~al~~~pg-i~~~~~~~-~~~~-----~~~~~~~~~~ll~~~~~~~~aI~~--~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 152 IERKAGLDAALKKFPG-IQLLDFQV-ADWN-----SQKAFPIMQAWMTRFNSKIKGVWA--ANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHHHTCTT-EEEEEEEE-CTTC-----HHHHHHHHHHHHHHHGGGEEEEEE--SSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHhCCC-cEEEeecc-CCCC-----HHHHHHHHHHHHHhcCCCeeEEEE--CCCchHHHHHHHHHHcCCC
Confidence 45678899999998 8 87654321 1111 13334445555433 4666655 6667788899999999987
Q ss_pred CCCeEEEee
Q 004136 259 GKDSVWIVT 267 (771)
Q Consensus 259 ~~~~~~i~~ 267 (771)
++...++.
T Consensus 223 -~di~vvg~ 230 (332)
T 2rjo_A 223 -GQIPVTGM 230 (332)
T ss_dssp -TTBCEECS
T ss_pred -CCCEEEee
Confidence 44444443
No 79
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.36 E-value=2.3e-06 Score=88.42 Aligned_cols=188 Identities=14% Similarity=0.089 Sum_probs=119.0
Q ss_pred CCCceEEEeccCCCccceEEeccCCCCCCCCCCCcccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhccccc
Q 004136 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (771)
Q Consensus 451 ~~~~~~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D 530 (771)
+.++|++|+.. .+.|. .+...--+|++.|++++|.++++... .+|++++..|.+|++|
T Consensus 12 ~~~~l~~Gv~p--~~~~~-----------------~~~~~~~~l~~~L~k~lG~~ve~~~~---~~~~~~i~aL~~G~vD 69 (321)
T 3p7i_A 12 QEKALNFGIIS--TESQQ-----------------NLKPQWTPFLQDMEKKLGVKVNAFFA---PDYAGIIQGMRFNKVD 69 (321)
T ss_dssp --CCEEEEECC--SSCHH-----------------HHHHHHHHHHHHHHHHHTSCEEEECC---SSHHHHHHHHHTTSCS
T ss_pred cCCcEEEEEec--CCCHH-----------------HHHHHHHHHHHHHHHHHCCCEEEEec---CCHHHHHHHHHcCCCc
Confidence 45689999853 22222 22233347999999999988555432 2699999999999999
Q ss_pred EEEe-eEeeeccc--eeeeeccc-------ceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhcc
Q 004136 531 AAVG-DLTILGNR--TEYVEFTQ-------PYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEH 600 (771)
Q Consensus 531 ~~~~-~~~~t~~r--~~~~~fs~-------p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~ 600 (771)
+++. +.+++..| .....|.. |++ ...++|++.++
T Consensus 70 ia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y--~~~lvv~~ds~---------------------------------- 113 (321)
T 3p7i_A 70 IAWYGNLSAMEAVDRANGQVFAQTVAADGSPGY--WSVLIVNKDSP---------------------------------- 113 (321)
T ss_dssp EEECCHHHHHHHHHHSCEEEEEEEEETTCCSSB--CEEEEEETTCS----------------------------------
T ss_pred EEEEChHHHHHHHHhcCCEEEEEEeccCCCcce--EEEEEEECCCC----------------------------------
Confidence 9975 34554433 23333433 322 23566665543
Q ss_pred ccCccCcCcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhh
Q 004136 601 QSNPEFRGTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLK 680 (771)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~ 680 (771)
|++++||.
T Consensus 114 ------------------------------------------------------------------------i~sl~DL~ 121 (321)
T 3p7i_A 114 ------------------------------------------------------------------------INNLNDLL 121 (321)
T ss_dssp ------------------------------------------------------------------------CCSHHHHH
T ss_pred ------------------------------------------------------------------------CCCHHHHH
Confidence 89999992
Q ss_pred --hCCceEEE-ecChHH----HHH-HHHhcCCCCCCc--ccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhc---CC
Q 004136 681 --SGNLKVGC-VDDSFV----KKY-LEEVLGFRSGNI--VPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKY---CK 747 (771)
Q Consensus 681 --~~~~~~g~-~~~s~~----~~~-l~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~---c~ 747 (771)
..+.++++ ..++.. ..+ +....+.....+ +.+.+ ..+.+.+|.+|++|+.+.+...+..++++. ..
T Consensus 122 ~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~-~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~ 200 (321)
T 3p7i_A 122 AKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAG-HETNALAVANKQVDVATNNTENLDKLKTSAPEKLK 200 (321)
T ss_dssp HTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECC-HHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHT
T ss_pred hhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCC-HHHHHHHHHCCCceEEEechHHHHHHHHhCcchhc
Confidence 12678875 333322 122 212223322221 22344 788999999999999999999888777653 23
Q ss_pred ceeEee-eeeeceEEEEEecCCC
Q 004136 748 KYTAIN-TYRFGGLGFVSNIIYS 769 (771)
Q Consensus 748 ~l~~~~-~~~~~~~g~~~~k~s~ 769 (771)
.++++. ......+++++||+-|
T Consensus 201 ~lrvl~~s~~~p~~~i~~~k~~~ 223 (321)
T 3p7i_A 201 ELKVIWKSPLIPGDPIVWRKNLS 223 (321)
T ss_dssp TEEEEEECSCBCCCEEEEETTSC
T ss_pred cEEEEEEcCCCCCCceeeeCCCC
Confidence 488887 5555678999999843
No 80
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.35 E-value=2.1e-05 Score=80.10 Aligned_cols=212 Identities=13% Similarity=0.072 Sum_probs=137.6
Q ss_pred CcEEEEEEEeCC---CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcC-CchH
Q 004136 33 EVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGM-ETWE 108 (771)
Q Consensus 33 ~~I~IG~i~p~s---~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp-~~s~ 108 (771)
.+.+||++.|.. .+.......+++.+.++. |+++.+...|+..++....+....++ .+++.+||.. ....
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~ 77 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY-----EIKLEFMAPEKEEDYLVQNELIEEAI-KRKPDVILLAAADYE 77 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH-----TCEEEECCCSSTTCHHHHHHHHHHHH-HTCCSEEEECCSCTT
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc-----CCEEEEecCCCCCCHHHHHHHHHHHH-HhCCCEEEEeCCChH
Confidence 456899999864 345566777777777765 46665554444678888788888888 6788877753 3333
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHc-C-CeEEEEEEEeCC--CCCCcc
Q 004136 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-N-WRRVAAIYEDNV--YGGDSG 184 (771)
Q Consensus 109 ~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~-~-w~~v~ii~~~~~--~g~~~~ 184 (771)
........+...++|+|..... .+. .+.+..+.+++...++.+++++... | .++++++..... .. ..
T Consensus 78 ~~~~~~~~~~~~~iPvV~~~~~--~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~--~~ 148 (289)
T 3brs_A 78 KTYDAAKEIKDAGIKLIVIDSG--MKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTA--MD 148 (289)
T ss_dssp TTHHHHTTTGGGTCEEEEESSC--CSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHH--HH
T ss_pred HhHHHHHHHHHCCCcEEEECCC--CCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccH--HH
Confidence 2224445566689999987754 221 1234567888888899999998764 6 899999986533 23 45
Q ss_pred hHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCCCe
Q 004136 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (771)
Q Consensus 185 ~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~ 262 (771)
..+.|++.+++.| ..+.... ..... ..+....+.++.+. .+++|+. .+...+..+++++++.|+. .+.
T Consensus 149 R~~gf~~~l~~~g-~~~~~~~-~~~~~-----~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~-~di 218 (289)
T 3brs_A 149 REEGLKIGLSDDS-NKIEAIY-YCDSN-----YDKAYDGTVELLTKYPDISVMVG--LNQYSATGAARAIKDMSLE-AKV 218 (289)
T ss_dssp HHHHHHHHHGGGG-GGEEEEE-ECTTC-----HHHHHHHHHHHHHHCTTEEEEEE--SSHHHHHHHHHHHHHTTCT-TTS
T ss_pred HHHHHHHHHHhCC-CcEEeee-cCCCC-----HHHHHHHHHHHHHhCCCceEEEE--CCCcchHHHHHHHHhcCCC-CCE
Confidence 5788899999988 6543322 11111 13344455555443 4666555 6667788899999999987 444
Q ss_pred EEEeeCc
Q 004136 263 VWIVTNT 269 (771)
Q Consensus 263 ~~i~~~~ 269 (771)
..++.+.
T Consensus 219 ~vvg~d~ 225 (289)
T 3brs_A 219 KLVCIDS 225 (289)
T ss_dssp EEEEEES
T ss_pred EEEEECC
Confidence 4454443
No 81
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.35 E-value=2.3e-05 Score=79.91 Aligned_cols=212 Identities=12% Similarity=0.027 Sum_probs=140.6
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE-cCCchHhH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEET 110 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~avi-Gp~~s~~~ 110 (771)
.+.+||+++|.. .+.......+++.+.++. |++ +.+.++..++....+....++ .+++.+|| .|..+...
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~--~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~~ 75 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL-----GGT--AIALDAGRNDQTQVSQIQTLI-AQKPDAIIEQLGNLDVL 75 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT-----TCE--EEEEECTTCHHHHHHHHHHHH-HHCCSEEEEESSCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCE--EEEEcCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChhhh
Confidence 557899999965 344456667777776664 444 445567778888888888888 67888666 56555556
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHH--cCCeEEEEEEEeCCCCCCcchHHH
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK--YNWRRVAAIYEDNVYGGDSGKLAL 188 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~--~~w~~v~ii~~~~~~g~~~~~~~~ 188 (771)
......+...++|+|..... .+ . .+..+..++...++.+++++.. .|.++++++.............+.
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~--~~----~---~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 76 NPWLQKINDAGIPLFTVDTA--TP----H---AINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHTTCCEEEESCC--CT----T---CSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEecCC--CC----C---cCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 66667777889999988755 22 1 2345778888889999999977 899999999754332100345678
Q ss_pred HHHHHhcc-CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC-----CceEEEEEecChhHHHHHHHHHHHcCCCCCCe
Q 004136 189 LAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-----QSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (771)
Q Consensus 189 l~~~~~~~-g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-----~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~ 262 (771)
+++.+++. | +++.......... .........+.++.+. ++++|+. .+...+..+++++++.|+. +.
T Consensus 147 f~~~l~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~--di 218 (291)
T 3l49_A 147 MKYVLEAFPD-VKIIEPELRDVIP---NTIQSAYSNVTDMLTKYPNEGDVGAIWA--CWDVPMIGATQALQAAGRT--DI 218 (291)
T ss_dssp HHHHHHTCTT-EEECSSCBCCCSS---SHHHHHHHHHHHHHHHCCSTTSCCEEEE--SSHHHHHHHHHHHHHTTCC--SC
T ss_pred HHHHHHHCCC-CEEEeeeccCCCC---CCHHHHHHHHHHHHHhCCCcCCcCEEEE--CCCchHHHHHHHHHHcCCC--Ce
Confidence 88999888 6 6644332222111 1112334445555443 4677654 7778888999999999987 34
Q ss_pred EEEeeCc
Q 004136 263 VWIVTNT 269 (771)
Q Consensus 263 ~~i~~~~ 269 (771)
..++.+.
T Consensus 219 ~vvg~d~ 225 (291)
T 3l49_A 219 RTYGVDG 225 (291)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 4444443
No 82
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=98.27 E-value=2.4e-05 Score=78.89 Aligned_cols=210 Identities=10% Similarity=0.057 Sum_probs=136.9
Q ss_pred EEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHHH
Q 004136 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (771)
Q Consensus 35 I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~v 113 (771)
-+||+++|.. .+.......+++-+.++. |+++. +.++..++....+....++ .+++.++|-..........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~ 74 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR-----GYQLL--IASSDDQPDSERQLQQLFR-ARRCDALFVASCLPPEDDS 74 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHH-HTTCSEEEECCCCCSSCCH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC-----CCEEE--EEeCCCCHHHHHHHHHHHH-HcCCCEEEEecCccccHHH
Confidence 4699999875 344556667776666653 55554 4566667877777777777 6788876643322112334
Q ss_pred HHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHH
Q 004136 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEAL 193 (771)
Q Consensus 114 ~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~ 193 (771)
...+...++|+|..... .+ ... +..+..++...++.+++++...|.++++++.............+.|++.+
T Consensus 75 ~~~~~~~~iPvV~~~~~--~~---~~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 75 YRELQDKGLPVIAIDRR--LD---PAH---FCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp HHHHHHTTCCEEEESSC--CC---TTT---CEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEccC--CC---ccc---cCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 44566679999987755 22 122 33467888888899999998889999999987644210145678899999
Q ss_pred hccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC---CceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeCc
Q 004136 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (771)
Q Consensus 194 ~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~---~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (771)
++.| +++.....-.... .+....+.++.+. .+++|+. .+...+..++++++++|+.+++...++.+.
T Consensus 147 ~~~~-~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~vp~di~vvg~d~ 216 (272)
T 3o74_A 147 QGYT-GEVRRYQGEAFSR------ECGQRLMQQLIDDLGGLPDALVT--TSYVLLQGVFDTLQARPVDSRQLQLGTFGD 216 (272)
T ss_dssp TTCC-SEEEEEEESSSSH------HHHHHHHHHHHHHHTSCCSEEEE--SSHHHHHHHHHHHHTSCGGGCCCEEEEESC
T ss_pred HHcC-CChheeecCCCCH------HHHHHHHHHHHhcCCCCCcEEEE--eCchHHHHHHHHHHHcCCCccceEEEEeCC
Confidence 9999 7765433211111 2333444444332 4787765 677788899999999998444555665554
No 83
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=98.27 E-value=1.2e-05 Score=82.54 Aligned_cols=206 Identities=12% Similarity=-0.056 Sum_probs=134.3
Q ss_pred CCcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE-cCCchHh
Q 004136 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEE 109 (771)
Q Consensus 32 ~~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~avi-Gp~~s~~ 109 (771)
..+.+||+++|.. .+.......+++.+.++. |+++.+...+...++....+....++ .+++.+|| .|.....
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~~~~~ 76 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ-----GVNLRVLEAGGYPNKSRQEQQLALCT-QWGANAIILGTVDPHA 76 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHH-----TCEEEEEECSSTTCHHHHHHHHHHHH-HHTCSEEEECCSSTTS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCeEEEEcCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChhH
Confidence 3568999999865 444556667777776665 45555544333338888888888888 57788666 4444432
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcC-----CeEEEEEEEeCC--CCCC
Q 004136 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN-----WRRVAAIYEDNV--YGGD 182 (771)
Q Consensus 110 ~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~-----w~~v~ii~~~~~--~g~~ 182 (771)
.......+. .++|+|..... .+.......+.+..+.+++...++.+++++...+ -++++++..... ..
T Consensus 77 ~~~~~~~~~-~~iPvV~~~~~--~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~-- 151 (304)
T 3o1i_D 77 YEHNLKSWV-GNTPVFATVNQ--LDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGT-- 151 (304)
T ss_dssp STTTHHHHT-TTSCEEECSSC--CCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-------
T ss_pred HHHHHHHHc-CCCCEEEecCC--CcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchH--
Confidence 233344456 89999988654 2211122335677788898999999999998888 889999976533 33
Q ss_pred cchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhh-hCCceEEEEEecChhHHHHHHHHHHHcCCC
Q 004136 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-DKQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (771)
Q Consensus 183 ~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~-~~~~~vIv~~~~~~~~~~~il~~a~~~g~~ 258 (771)
....+.|++.+++.| +++.... .... + .......+.++. ...+++ |. ++...+..+++++++.|+.
T Consensus 152 ~~R~~gf~~~l~~~~-~~~~~~~--~~~~---~-~~~~~~~~~~~l~~~~~~a-i~--~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 152 KPVTTGFYEAIKNSD-IHIVDSF--WADN---D-KELQRNLVQRVIDMGNIDY-IV--GSAVAIEAAISELRSADKT 218 (304)
T ss_dssp CHHHHHHHHTTTTBT-EEEEECC--CCCS---C-HHHHHHHHHHHHHHSCCSE-EE--ECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHHHHhcCC-CEEEEee--cCCC---c-HHHHHHHHHHHHcCCCCCE-EE--ecCcchHHHHHHHHhcCCC
Confidence 556889999999999 7776533 1111 1 122333333333 336777 44 5677888999999999986
No 84
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.26 E-value=2.5e-05 Score=80.29 Aligned_cols=187 Identities=13% Similarity=0.202 Sum_probs=122.4
Q ss_pred CCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHh
Q 004136 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~--~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~ 109 (771)
.++.+||++...+.+.-.+...|++-++ ++.| .|.++.+.+.|+..++....+.+.++. +++|++||..... .
T Consensus 6 ~~t~~IGvi~~~~~p~~~~~~~gi~~~l---~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~-~~~vDgII~~~~~-~ 80 (302)
T 2qh8_A 6 AKTAKVAVSQIVEHPALDATRQGLLDGL---KAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFV-GENPDVLVGIATP-T 80 (302)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHHHHH---HHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHH-HTCCSEEEEESHH-H
T ss_pred cCCcEEEEEEeccChhHHHHHHHHHHHH---HHcCCCCCCceEEEEecCCCCHHHHHHHHHHHH-hCCCCEEEECChH-H
Confidence 3678999985444444455556655444 4443 355889999999999999998888888 7889988865432 2
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCcc------CCCCceEEEeecCcHHHHHHHHHHHHHc--CCeEEEEEEEeCC-CC
Q 004136 110 TAVVAEIASRVQVPILSFAAPAVTPLSM------SRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV-YG 180 (771)
Q Consensus 110 ~~~v~~~~~~~~iP~Is~~a~~~~~~l~------~~~~p~~fr~~p~~~~~~~a~~~~l~~~--~w~~v~ii~~~~~-~g 180 (771)
...+.. ...++|+|..... .+... ....+++..+. +...+...++++.+. |.+++++|+.... .+
T Consensus 81 ~~~~~~--~~~~iPvV~~~~~--~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~ 154 (302)
T 2qh8_A 81 AQALVS--ATKTIPIVFTAVT--DPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANA 154 (302)
T ss_dssp HHHHHH--HCSSSCEEEEEES--CTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHH
T ss_pred HHHHHh--cCCCcCEEEEecC--CHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCcEEEEEecCCCcch
Confidence 333333 2679999987654 33211 01123444443 222356667888776 9999999997643 24
Q ss_pred CCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecCh
Q 004136 181 GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL 242 (771)
Q Consensus 181 ~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~ 242 (771)
....+.+++.+++.| +++....... . .+....++++.. ++++|+. ..+.
T Consensus 155 --~~r~~g~~~al~~~g-i~~~~~~~~~--~------~~~~~~~~~l~~-~~dai~~-~~D~ 203 (302)
T 2qh8_A 155 --VSLMELLKLSAAKHG-IKLVEATALK--S------ADVQSATQAIAE-KSDVIYA-LIDN 203 (302)
T ss_dssp --HHHHHHHHHHHHHTT-CEEEEEECSS--G------GGHHHHHHHHGG-GCSEEEE-CSCH
T ss_pred --HHHHHHHHHHHHHcC-CEEEEEecCC--h------HHHHHHHHHHhc-cCCEEEE-CCcH
Confidence 556788999999999 8876543221 1 356777777764 7899888 6554
No 85
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.25 E-value=3.3e-05 Score=78.70 Aligned_cols=206 Identities=8% Similarity=0.047 Sum_probs=131.4
Q ss_pred EEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcC-CchHhHHH
Q 004136 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGM-ETWEETAV 112 (771)
Q Consensus 35 I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp-~~s~~~~~ 112 (771)
.+||++.|.. .+.......+++.+.++. |+++ .+.++..++....+....++ .+++.+||.. ........
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~~~~ 74 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL-----GYEA--TIFDSQNDTAKESAHFDAII-AAGYDAIIFNPTDADGSIA 74 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT-----TCEE--EEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSCTTTTHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEE--EEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecCChHHHHH
Confidence 5799999864 445566777777777664 4544 45677778888888888888 6788877753 33332223
Q ss_pred HHHhhccCCccEEeecCCCCCCCccCCCCceEEE-eecCcHHHHHHHHHHHHHc------CCeE--EEEEEEeCC--CCC
Q 004136 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIR-MASNDSEQMKCIADLARKY------NWRR--VAAIYEDNV--YGG 181 (771)
Q Consensus 113 v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr-~~p~~~~~~~a~~~~l~~~------~w~~--v~ii~~~~~--~g~ 181 (771)
....+...++|+|..... .+. . +.... +..++...++.+++++... |.++ ++++..... ..
T Consensus 75 ~~~~~~~~~iPvV~~~~~--~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~- 146 (290)
T 2fn9_A 75 NVKRAKEAGIPVFCVDRG--INA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPT- 146 (290)
T ss_dssp HHHHHHHTTCCEEEESSC--CSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHH-
T ss_pred HHHHHHHCCCeEEEEecC--CCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchH-
Confidence 344456679999987754 221 1 11223 7778888888889988766 7888 666664432 23
Q ss_pred CcchHHHHHHHHhcc-CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCC
Q 004136 182 DSGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (771)
Q Consensus 182 ~~~~~~~l~~~~~~~-g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~ 258 (771)
....+.|++.+++. | +++.... ..... ..+....++++.+. ++++|+. .+...+..+++++++.|+
T Consensus 147 -~~R~~gf~~~l~~~~g-~~~~~~~-~~~~~-----~~~~~~~~~~ll~~~~~~~ai~~--~~d~~a~g~~~al~~~g~- 215 (290)
T 2fn9_A 147 -WDRSNGFHSVVDQYPE-FKMVAQQ-SAEFD-----RDTAYKVTEQILQAHPEIKAIWC--GNDAMALGAMKACEAAGR- 215 (290)
T ss_dssp -HHHHHHHHHHHTTSTT-EEEEEEE-ECTTC-----HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHTTC-
T ss_pred -HHHHHHHHHHHHhCCC-CEEEEec-cCCCC-----HHHHHHHHHHHHHhCCCCcEEEE--CCchHHHHHHHHHHHCCC-
Confidence 45577889999998 8 7764322 11111 12233445554432 5777665 566678889999999998
Q ss_pred CCCeEEEeeC
Q 004136 259 GKDSVWIVTN 268 (771)
Q Consensus 259 ~~~~~~i~~~ 268 (771)
++...++.+
T Consensus 216 -~dv~vig~d 224 (290)
T 2fn9_A 216 -TDIYIFGFD 224 (290)
T ss_dssp -TTCEEECCB
T ss_pred -CCeEEEEeC
Confidence 334444443
No 86
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.25 E-value=1.8e-05 Score=80.88 Aligned_cols=212 Identities=10% Similarity=0.052 Sum_probs=136.9
Q ss_pred CCcEEEEEEEeC---CCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchH
Q 004136 32 EEVTKIGAIVDA---NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (771)
Q Consensus 32 ~~~I~IG~i~p~---s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~ 108 (771)
..+.+||+++|. +.+.......+++.+.++. |+++ .+.++..++....+....++ ++++.+||......
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~ 88 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK-----GRQL--LLADGKHSAEEERQAIQYLL-DLRCDAIMIYPRFL 88 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT-----TCEE--EEECCTTSHHHHHHHHHHHH-HTTCSEEEEECSSS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC-----CCEE--EEEeCCCCHHHHHHHHHHHH-hcCCCEEEEecCCC
Confidence 356899999996 3556677888888777764 4544 45677778888788888888 67888777533322
Q ss_pred hHHHHHHhhcc-CCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcch
Q 004136 109 ETAVVAEIASR-VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGK 185 (771)
Q Consensus 109 ~~~~v~~~~~~-~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~ 185 (771)
....+ ..+.. .++|+|..... .+. +.+..+..++...+..+++++...|.++++++..+.. .+ ...
T Consensus 89 ~~~~~-~~l~~~~~iPvV~~~~~--~~~------~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~--~~R 157 (296)
T 3brq_A 89 SVDEI-DDIIDAHSQPIMVLNRR--LRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTS--IER 157 (296)
T ss_dssp CHHHH-HHHHHTCSSCEEEESCC--CSS------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHH--HHH
T ss_pred ChHHH-HHHHhcCCCCEEEEccc--cCC------CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccH--HHH
Confidence 22223 33445 79999988754 221 1233567777778888899998889999999987643 33 455
Q ss_pred HHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh--CCceEEEEEecChhHHHHHHHHHHHcCCCCC-Ce
Q 004136 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DS 262 (771)
Q Consensus 186 ~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~ 262 (771)
.+.|++.+++.| +.+.....+.... + ..+....+.++.+ .++++|+. .+...+..+++++++.|+..+ +.
T Consensus 158 ~~gf~~~l~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di 230 (296)
T 3brq_A 158 LAGYKDALAQHG-IALNEKLIANGKW---T-PASGAEGVEMLLERGAKFSALVA--SNDDMAIGAMKALHERGVAVPEQV 230 (296)
T ss_dssp HHHHHHHHHTTT-CCCCGGGEECCCS---S-HHHHHHHHHHHHTC--CCSEEEE--SSHHHHHHHHHHHHHHTCCTTTTC
T ss_pred HHHHHHHHHHcC-CCCChhhEEeCCC---C-hhHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCCCce
Confidence 788999999998 6654322222111 1 1233445555543 35787766 566778889999999998643 45
Q ss_pred EEEeeCc
Q 004136 263 VWIVTNT 269 (771)
Q Consensus 263 ~~i~~~~ 269 (771)
..++.+.
T Consensus 231 ~vvg~d~ 237 (296)
T 3brq_A 231 SVIGFDD 237 (296)
T ss_dssp EEEEESC
T ss_pred EEEeecC
Confidence 5555444
No 87
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.25 E-value=5.3e-05 Score=77.13 Aligned_cols=212 Identities=12% Similarity=0.098 Sum_probs=134.8
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
...+||+++|.. .+.......+++.+.++. |+++.+ .++..++....+....++ ++++.+||........
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~~- 76 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK-----GYTLIL--GNAWNNLEKQRAYLSMMA-QKRVDGLLVMCSEYPE- 76 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH-----TCEEEE--EECTTCHHHHHHHHHHHH-HTTCSEEEEECSCCCH-
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCeEEE--EcCCCChHHHHHHHHHHH-hCCCCEEEEEeccCCH-
Confidence 567899999864 445566777777777764 455544 567778887777788887 6788877742222111
Q ss_pred HHHHhhc-cCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeC--CCCCCcchHHH
Q 004136 112 VVAEIAS-RVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN--VYGGDSGKLAL 188 (771)
Q Consensus 112 ~v~~~~~-~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~--~~g~~~~~~~~ 188 (771)
.....+. ..++|+|..... .+. . ++...+..++...++.+++++...|.++++++.... ... ....+.
T Consensus 77 ~~~~~l~~~~~iPvV~~~~~--~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~g 147 (289)
T 1dbq_A 77 PLLAMLEEYRHIPMVVMDWG--EAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTG--AGRLAG 147 (289)
T ss_dssp HHHHHHHHTTTSCEEEEECS--SCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC--------CHHHHH
T ss_pred HHHHHHHhccCCCEEEEccC--CCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccH--HHHHHH
Confidence 2223333 379999988754 221 1 223457788888899999999888999999998653 244 667888
Q ss_pred HHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh--CCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEE
Q 004136 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWI 265 (771)
Q Consensus 189 l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i 265 (771)
+++.+++.| +.+.....+.... + ..+....+.++.+ .++++|+. .+...+..+++++++.|+..+ +...+
T Consensus 148 ~~~~l~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~vP~di~vv 220 (289)
T 1dbq_A 148 FMKAMEEAM-IKVPESWIVQGDF---E-PESGYRAMQQILSQPHRPTAVFC--GGDIMAMGALCAADEMGLRVPQDVSLI 220 (289)
T ss_dssp HHHHHHHTT-CCCCGGGBCCCCS---S-HHHHHHHHHHHHTSSSCCSEEEE--SCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHCC-CCCChHHeEeCCC---C-HHHHHHHHHHHHhCCCCCCEEEE--CCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999998 6543222221111 1 1233445555544 36787766 566778889999999998643 34444
Q ss_pred eeCc
Q 004136 266 VTNT 269 (771)
Q Consensus 266 ~~~~ 269 (771)
+.+.
T Consensus 221 g~d~ 224 (289)
T 1dbq_A 221 GYDN 224 (289)
T ss_dssp EEEC
T ss_pred eeCC
Confidence 4443
No 88
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.25 E-value=3.7e-05 Score=79.53 Aligned_cols=207 Identities=9% Similarity=-0.007 Sum_probs=131.9
Q ss_pred EEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEe-cCCCCHHHHHHHHHHHHhcCCeEEEE-cCCchHhHHH
Q 004136 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAV 112 (771)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~-D~~~~~~~a~~~~~~li~~~~v~avi-Gp~~s~~~~~ 112 (771)
+||+++|.. .++......+++.+.++. |+ ++.+. ++..++....+.+..++ .+++.+|| .|..+.....
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~-----g~--~~~~~~~~~~d~~~q~~~i~~li-~~~vdgiii~~~~~~~~~~ 76 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL-----GI--DVTYDGPTEPSVSGQVQLVNNFV-NQGYDAIIVSAVSPDGLCP 76 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH-----TC--EEEECCCSSCCHHHHHHHHHHHH-HTTCSEEEECCSSSSTTHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh-----CC--EEEEECCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCHHHHHH
Confidence 799999865 445566777777777765 33 44455 46788888888899998 67888755 5655544445
Q ss_pred HHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHH---cCCeEEEEEEEeCC--CCCCcchHH
Q 004136 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK---YNWRRVAAIYEDNV--YGGDSGKLA 187 (771)
Q Consensus 113 v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~---~~w~~v~ii~~~~~--~g~~~~~~~ 187 (771)
+...+...+||+|..... .+. .. ...+....+....++.+++++.. .+.+++++|..... .. ....+
T Consensus 77 ~~~~a~~~gipvV~~d~~--~~~--~~--~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~--~~r~~ 148 (316)
T 1tjy_A 77 ALKRAMQRGVKILTWDSD--TKP--EC--RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQ--NQWVK 148 (316)
T ss_dssp HHHHHHHTTCEEEEESSC--CCG--GG--CSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHH--HHHHH
T ss_pred HHHHHHHCcCEEEEecCC--CCC--CC--ceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhH--HHHHH
Confidence 556677789999988754 221 11 12232357777788888888865 57889999985432 22 44567
Q ss_pred HHHHHHhcc--CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCCCeE
Q 004136 188 LLAEALQNV--SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (771)
Q Consensus 188 ~l~~~~~~~--g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~ 263 (771)
.+++.+++. + +++..... .... .....+.+.++.+. ++++|+. .+...+..++++++++| . ....
T Consensus 149 g~~~~l~~~~~~-~~~~~~~~-~~~~-----~~~~~~~~~~ll~~~~~~~aI~~--~nD~~A~g~~~al~~~G-~-~dv~ 217 (316)
T 1tjy_A 149 EAKAKISQEHPG-WEIVTTQF-GYND-----ATKSLQTAEGIIKAYPDLDAIIA--PDANALPAAAQAAENLK-R-NNLA 217 (316)
T ss_dssp HHHHHHHHHCTT-EEEEEEEE-CTTC-----HHHHHHHHHHHHHHCSSCCEEEE--CSTTHHHHHHHHHHHTT-C-CSCE
T ss_pred HHHHHHHhhCCC-cEEEEecc-CCCC-----HHHHHHHHHHHHHhCCCCCEEEE--CCCccHHHHHHHHHHcC-C-CCEE
Confidence 788888765 5 66554322 1111 13344455555443 4566555 55667788899999999 5 4344
Q ss_pred EEeeCc
Q 004136 264 WIVTNT 269 (771)
Q Consensus 264 ~i~~~~ 269 (771)
.++.+.
T Consensus 218 VvG~D~ 223 (316)
T 1tjy_A 218 IVGFST 223 (316)
T ss_dssp EEEBCC
T ss_pred EEEeCC
Confidence 444433
No 89
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=4.4e-05 Score=79.32 Aligned_cols=212 Identities=8% Similarity=0.080 Sum_probs=131.9
Q ss_pred CCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchH-hH
Q 004136 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE-ET 110 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~-~~ 110 (771)
+.+.+||++.|.+.++......+++.+.++ . .|+++ .+.++..++....+....++ .+++.+||....+. ..
T Consensus 4 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~---~-~g~~l--~i~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~ 76 (325)
T 2x7x_A 4 TPHFRIGVAQCSDDSWRHKMNDEILREAMF---Y-NGVSV--EIRSAGDDNSKQAEDVHYFM-DEGVDLLIISANEAAPM 76 (325)
T ss_dssp --CCEEEEEESCCSHHHHHHHHHHHHHHTT---S-SSCEE--EEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSSHHHH
T ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHH---c-CCcEE--EEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCHHHH
Confidence 356889999987433333444455544432 1 24554 45667778888788888888 68898877643332 22
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHc--CCeEEEEEEEeCC--CCCCcchH
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV--YGGDSGKL 186 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~--~w~~v~ii~~~~~--~g~~~~~~ 186 (771)
......+...++|+|..... .+. . +.+..+..++...+..+++++... |.++++++..... .. ....
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~--~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~--~~R~ 147 (325)
T 2x7x_A 77 TPIVEEAYQKGIPVILVDRK--ILS---D--KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPA--MERH 147 (325)
T ss_dssp HHHHHHHHHTTCCEEEESSC--CSS---S--CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHH--HHHH
T ss_pred HHHHHHHHHCCCeEEEeCCC--CCC---c--ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccH--HHHH
Confidence 33445556679999987654 221 1 233456778888888888988664 8899999986533 23 4456
Q ss_pred HHHHHHHhcc-CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCCCeE
Q 004136 187 ALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (771)
Q Consensus 187 ~~l~~~~~~~-g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~ 263 (771)
+.|++.+++. | +++.... ..... ..+-...+.++.+. .+++|+. .+...+..+++++++.|+ +.+..
T Consensus 148 ~Gf~~al~~~pg-~~~~~~~-~~~~~-----~~~~~~~~~~ll~~~~~~~aI~~--~nd~~A~g~~~al~~~Gi-p~dv~ 217 (325)
T 2x7x_A 148 QGFMAAISKFPD-IKLIDKA-DAAWE-----RGPAEIEMDSMLRRHPKIDAVYA--HNDRIAPGAYQAAKMAGR-EKEMI 217 (325)
T ss_dssp HHHHHHHHTCTE-EEEEEEE-ECTTS-----HHHHHHHHHHHHHHCSCCCEEEE--SSTTHHHHHHHHHHHTTC-TTSSE
T ss_pred HHHHHHHHhCCC-CEEEeee-cCCCC-----HHHHHHHHHHHHHhCCCCCEEEE--CCCchHHHHHHHHHHcCC-CCCeE
Confidence 8889999988 8 7765422 11111 12233444554432 5777766 566677888999999997 34455
Q ss_pred EEeeCc
Q 004136 264 WIVTNT 269 (771)
Q Consensus 264 ~i~~~~ 269 (771)
.++.+.
T Consensus 218 vig~D~ 223 (325)
T 2x7x_A 218 FVGIDA 223 (325)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 555544
No 90
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.23 E-value=2e-05 Score=80.77 Aligned_cols=205 Identities=12% Similarity=0.050 Sum_probs=139.7
Q ss_pred cEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE-cCCchHhHH
Q 004136 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETA 111 (771)
Q Consensus 34 ~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~avi-Gp~~s~~~~ 111 (771)
.++||++.|.. .+.......+++.+.++. |+++.+...++..++....+....++ .+++.+|| .|.......
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~~~~~~~ 76 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL-----KVDLQILAPPGANDVPKQVQFIESAL-ATYPSGIATTIPSDTAFS 76 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH-----TCEEEEECCSSSCCHHHHHHHHHHHH-HTCCSEEEECCCCSSTTH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh-----CcEEEEECCCCcCCHHHHHHHHHHHH-HcCCCEEEEeCCCHHHHH
Confidence 47899999986 455667778888888775 45555443223268888888888888 67888666 555555445
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcC--CeEEEEEEEeCCCCCCcchHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN--WRRVAAIYEDNVYGGDSGKLALL 189 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~--w~~v~ii~~~~~~g~~~~~~~~l 189 (771)
.....+...++|+|..... .+.. ...+.+..+..++...++.+++++...+ -++++++.............+.|
T Consensus 77 ~~~~~~~~~giPvV~~~~~--~~~~--~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf 152 (297)
T 3rot_A 77 KSLQRANKLNIPVIAVDTR--PKDK--TKNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGI 152 (297)
T ss_dssp HHHHHHHHHTCCEEEESCC--CSCT--TTSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEcCC--Cccc--cccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 5566677789999988765 3321 1123455678888999999999998777 89999998654321004567889
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCC
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~ 258 (771)
++.+++.| +++.... ... + .......+.++.+. ++++|+. .+...+..++++++++|+.
T Consensus 153 ~~~l~~~g-~~~~~~~--~~~----~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~ 213 (297)
T 3rot_A 153 KTILQDKG-IFFEELD--VGT----D-PNQVQSRVKSYFKIHPETNIIFC--LTSQALDPLGQMLLHPDRY 213 (297)
T ss_dssp HHHHHHTT-CEEEEEE--CCS----C-HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHSHHHH
T ss_pred HHHHHhcC-CeEEEee--cCC----C-hHHHHHHHHHHHHhCCCCCEEEE--cCCcchHHHHHHHHhcCCc
Confidence 99999999 8876543 111 1 13444555554433 4566555 6777788899999999875
No 91
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.22 E-value=7.5e-05 Score=76.57 Aligned_cols=212 Identities=11% Similarity=-0.002 Sum_probs=134.0
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE-cCCchHhH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEET 110 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~avi-Gp~~s~~~ 110 (771)
++.+||++.|.. .+.......+++.+.++. |+++.+ ..++..++....+....++ .+++.+|| .|..+...
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~-----g~~~~~-~~~~~~~~~~~~~~~~~l~-~~~vdgiii~~~~~~~~ 75 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF-----NLNASQ-VGPSSTDAPQQVKIIEDLI-ARKVDAITIVPNDANVL 75 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT-----TEEEEE-ECCSSSCHHHHHHHHHHHH-HTTCSEEEECCSCHHHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc-----CCEEEE-ECCCCCCHHHHHHHHHHHH-HcCCCEEEEecCChHHH
Confidence 468999999875 455567777888777765 444432 2346678888888888888 67888765 45554444
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHH-cCCe-EEEEEEEeCC--CCCCcchH
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWR-RVAAIYEDNV--YGGDSGKL 186 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~-~~w~-~v~ii~~~~~--~g~~~~~~ 186 (771)
......+...++|+|..... . ... +.+..+..++...++.+++++.. .|.+ +++++..... .. ....
T Consensus 76 ~~~~~~~~~~~ipvV~~~~~--~--~~~---~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~--~~R~ 146 (303)
T 3d02_A 76 EPVFKKARDAGIVVLTNESP--G--QPS---ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQH--NLWA 146 (303)
T ss_dssp HHHHHHHHHTTCEEEEESCT--T--CTT---CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHH--HHHH
T ss_pred HHHHHHHHHCCCeEEEEecC--C--CCC---CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccH--HHHH
Confidence 44455666789999987643 1 111 33456778888888889998866 7877 9998875432 22 3456
Q ss_pred HHHHHHHhccCC-eEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCCCeE
Q 004136 187 ALLAEALQNVSS-SEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (771)
Q Consensus 187 ~~l~~~~~~~g~-~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~ 263 (771)
+.|++.+++.+. +++... .+.... + ..+....+.++.+. .+++|+. .+...+..++++++++|+. .+..
T Consensus 147 ~gf~~~l~~~~~~~~~~~~-~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~-~dv~ 218 (303)
T 3d02_A 147 DLLVKYQKEHYPDMHEVTR-RMPVAE---S-VDDSRRTTLDLMKTYPDLKAVVS--FGSNGPIGAGRAVKEKRAK-NKVA 218 (303)
T ss_dssp HHHHHHHHHHCTTEEESSS-CBSCTT---C-HHHHHHHHHHHHHHCTTEEEEEE--SSTTHHHHHHHHHHHTTCT-TTCE
T ss_pred HHHHHHHHhhCCCCEEEEe-ecCCCC---C-HHHHHHHHHHHHHhCCCCCEEEE--eCCcchhHHHHHHHhcCCC-CCeE
Confidence 778888887540 333211 111111 1 13345556665544 3565555 5556778899999999987 4344
Q ss_pred EEeeC
Q 004136 264 WIVTN 268 (771)
Q Consensus 264 ~i~~~ 268 (771)
.++.+
T Consensus 219 vig~d 223 (303)
T 3d02_A 219 VYGMM 223 (303)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 44443
No 92
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=98.21 E-value=0.00018 Score=75.58 Aligned_cols=219 Identities=14% Similarity=0.146 Sum_probs=141.5
Q ss_pred cEEEEEEEeCC-C-cCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEcCCchHhH
Q 004136 34 VTKIGAIVDAN-S-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEET 110 (771)
Q Consensus 34 ~I~IG~i~p~s-~-~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~s~~~ 110 (771)
..+||+++|.. . ++......+++.+.++. |+++. +.++..++....+.+.+++.. +++.+||-.......
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~-----g~~~~--~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~ 75 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL-----GLDLR--ILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVA 75 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH-----TCEEE--EEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc-----CCeEE--EEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhH
Confidence 46899999986 2 45667778888777776 45554 447777888888889999954 688876643333445
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccC-------CCCc-eEEEeecCcHHHHHHHHHHHHHcC------C-eEEEEEEE
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMS-------RRWP-YLIRMASNDSEQMKCIADLARKYN------W-RRVAAIYE 175 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~-------~~~p-~~fr~~p~~~~~~~a~~~~l~~~~------w-~~v~ii~~ 175 (771)
......+...++|+|..... .+.... ..++ ++..+.+++...++.++++|...+ - ++++++..
T Consensus 76 ~~~~~~~~~~giPvV~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g 153 (350)
T 3h75_A 76 PQILRLSQGSGIKLFIVNSP--LTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSG 153 (350)
T ss_dssp HHHHHHHTTSCCEEEEEESC--CCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEES
T ss_pred HHHHHHHHhCCCcEEEEcCC--CChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeC
Confidence 56667788899999998765 333210 1111 366788888889999999886655 4 79999986
Q ss_pred eCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHH
Q 004136 176 DNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEAN 253 (771)
Q Consensus 176 ~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~ 253 (771)
...........+.|++.+++.| . +.....+.... + .......+.++.+. ++++|+ +++...+..++++++
T Consensus 154 ~~~~~~~~~R~~Gf~~~l~~~~-~-~~~~~~~~~~~---~-~~~~~~~~~~~L~~~~~~~aI~--~~~d~~a~g~~~al~ 225 (350)
T 3h75_A 154 LKVTPAAQLRERGLRRALAEHP-Q-VHLRQLVYGEW---N-RERAYRQAQQLLKRYPKTQLVW--SANDEMALGAMQAAR 225 (350)
T ss_dssp CTTSHHHHHHHHHHHHHHHHCT-T-EEEEEEEECTT---C-HHHHHHHHHHHHHHCTTEEEEE--ESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCC-C-eEEEEEeeCCC---c-HHHHHHHHHHHHHhCCCcCEEE--ECChHHHHHHHHHHH
Confidence 5332100445788999999988 5 22222222111 1 13344445555444 345544 477778889999999
Q ss_pred HcCCCCC-CeEEEeeCc
Q 004136 254 RMGLVGK-DSVWIVTNT 269 (771)
Q Consensus 254 ~~g~~~~-~~~~i~~~~ 269 (771)
+.|+..+ +...++.+.
T Consensus 226 ~~G~~vP~di~vvg~d~ 242 (350)
T 3h75_A 226 ELGRKPGTDLLFSGVNS 242 (350)
T ss_dssp HTTCCBTTTBEEEEESC
T ss_pred HcCCCCCCCeEEEecCC
Confidence 9998633 355555544
No 93
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.20 E-value=1.9e-05 Score=80.55 Aligned_cols=214 Identities=9% Similarity=0.088 Sum_probs=133.3
Q ss_pred CCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
+...+||+++|.+.+.......+++.+.++. |+++. +.++..++....+....++ .+++.+||.........
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~~ 77 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQKH-----HLHVA--VASSEENEDKQQDLIETFV-SQNVSAIILVPVKSKFQ 77 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGGG-----TCEEE--EEECTTCHHHHHHHHHHHH-HTTEEEEEECCSSSCCC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHHC-----CCEEE--EEeCCCCHHHHHHHHHHHH-HcCccEEEEecCCCChH
Confidence 3568899999973334455556666555543 45554 4566678887777788887 78899887643332211
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcchHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALL 189 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l 189 (771)
.+.. + .++|+|..... .+. +.+..+..++...++.+++++...|.++++++..... .. ....+.|
T Consensus 78 ~~~~-l--~~iPvV~~~~~--~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~gf 144 (288)
T 2qu7_A 78 MKRE-W--LKIPIMTLDRE--LES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTT--IGRKNGY 144 (288)
T ss_dssp CCGG-G--GGSCEEEESCC--CSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHH--HHHHHHH
T ss_pred HHHH-h--cCCCEEEEecc--cCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCH--HHHHHHH
Confidence 2222 2 78999987755 221 2344677888888999999998889999999986533 33 4557788
Q ss_pred HHHHhccCCeEEEEeeec--CCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEe
Q 004136 190 AEALQNVSSSEIQSRLVL--PPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIV 266 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~--~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~ 266 (771)
++.+++.| +++.....+ .......+...+-...+.++.+.++++|+. .+...+..++++++++|+..+ +...++
T Consensus 145 ~~~l~~~g-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vvg 221 (288)
T 2qu7_A 145 NKAISEFD-LNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVA--TNHLLLLGALQAIKESEKEIKKDVIIVG 221 (288)
T ss_dssp HHHHHHTT-CCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEE--CSHHHHHHHHHHHHHSSCCBTTTBEEEE
T ss_pred HHHHHHcC-CCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEE--CCcHHHHHHHHHHHHhCCCCCCceEEEE
Confidence 89999988 654322111 111000001122333444444337888776 566678888999999998633 344444
Q ss_pred eCc
Q 004136 267 TNT 269 (771)
Q Consensus 267 ~~~ 269 (771)
.+.
T Consensus 222 ~d~ 224 (288)
T 2qu7_A 222 FDD 224 (288)
T ss_dssp ESC
T ss_pred eCC
Confidence 443
No 94
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.19 E-value=0.00012 Score=74.70 Aligned_cols=200 Identities=11% Similarity=0.173 Sum_probs=129.9
Q ss_pred cEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHHH
Q 004136 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (771)
Q Consensus 34 ~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~v 113 (771)
..+||++-..+.+.-.+...|++-++++.+- .|..+.+.+.|+..++......+.++. +++|.+||..... ....+
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~-~~~vDgII~~~~~-~~~~~ 77 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLAEEGY--KDDQVKIDFMNSEGDQSKVATMSKQLV-ANGNDLVVGIATP-AAQGL 77 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHHHTTC--CGGGEEEEEEECTTCHHHHHHHHHHHT-TSSCSEEEEESHH-HHHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHHHcCC--CCCceEEEEecCCCCHHHHHHHHHHHH-hcCCCEEEECCcH-HHHHH
Confidence 3679998333444445566666655555322 345888999999999999888888887 7889988865432 22333
Q ss_pred HHhhccCCccEEeecCCCCCCCcc---C---CCCceEEEeecCcHHHHHHHHHHHHHc--CCeEEEEEEEeCC-CCCCcc
Q 004136 114 AEIASRVQVPILSFAAPAVTPLSM---S---RRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV-YGGDSG 184 (771)
Q Consensus 114 ~~~~~~~~iP~Is~~a~~~~~~l~---~---~~~p~~fr~~p~~~~~~~a~~~~l~~~--~w~~v~ii~~~~~-~g~~~~ 184 (771)
.. ...++|+|..... .+... . ...+++..+. +...+...++++.+. |.+++++|+.... .+ ..
T Consensus 78 ~~--~~~~iPvV~~~~~--~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~--~~ 149 (295)
T 3lft_A 78 AS--ATKDLPVIMAAIT--DPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNS--KT 149 (295)
T ss_dssp HH--HCSSSCEEEESCS--CTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHH--HH
T ss_pred HH--cCCCCCEEEEecc--ChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcch--HH
Confidence 22 2479999987654 33221 1 1112343333 333466777888776 8899999998754 23 45
Q ss_pred hHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCC
Q 004136 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (771)
Q Consensus 185 ~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~ 257 (771)
..+.+++++++.| +++....... . .+..+.++++.+ ++++|+. ..+ ..+...++++.+.+.
T Consensus 150 r~~g~~~al~~~g-i~~~~~~~~~--~------~~~~~~~~~l~~-~~dai~~-~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 150 QVEEFKAYAEKAG-LTVETFAVPS--T------NEIASTVTVMTS-KVDAIWV-PID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHHHTT-CEEEEEEESS--G------GGHHHHHHHHTT-TCSEEEE-CSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CEEEEEecCC--H------HHHHHHHHHHHh-cCCEEEE-CCc-hhHHHHHHHHHHHHH
Confidence 6788999999999 8876543221 1 346677777764 7899888 554 445556777777775
No 95
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=98.18 E-value=7.4e-05 Score=76.25 Aligned_cols=210 Identities=11% Similarity=0.064 Sum_probs=135.1
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
...+||+++|.. .+.......+++.+.++. |+++. +.++..++....+....++ .+++.+||.........
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~~~ 90 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQR-----GYQLL--IACSEDQPDNEMRCIEHLL-QRQVDAIIVSTSLPPEH 90 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHH-HTTCSEEEECCSSCTTC
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC-----CCEEE--EEcCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCCCcH
Confidence 567899999854 344455666666666553 45554 4566667777777777777 67888777533222222
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcchHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALL 189 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l 189 (771)
.....+...++|+|..... .+. +.+..+..++...+..++++|...|.++|+++..... .. ....+.|
T Consensus 91 ~~~~~~~~~~iPvV~~~~~--~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~Gf 160 (293)
T 2iks_A 91 PFYQRWANDPFPIVALDRA--LDR------EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVS--FLREQGF 160 (293)
T ss_dssp HHHHTTTTSSSCEEEEESC--CCT------TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHH--HHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCc--cCc------CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccH--HHHHHHH
Confidence 3344566789999988754 221 1233577888888888999998889999999987643 22 4557889
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEe
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIV 266 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~ 266 (771)
++.+++.| .+..... .... + ..+-...+.++.+. .+++|+. .+...+..+++++++.|+..+ +...++
T Consensus 161 ~~~l~~~g-~~~~~~~--~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vvg 231 (293)
T 2iks_A 161 RTAWKDDP-REVHFLY--ANSY---E-REAAAQLFEKWLETHPMPQALFT--TSFALLQGVMDVTLRRDGKLPSDLAIAT 231 (293)
T ss_dssp HHHHTTCC-CCEEEEE--ESSS---C-HHHHHHHHHHHTTTSCCCSEEEE--SSHHHHHHHHHHHHHHHSSCCSSCEEEE
T ss_pred HHHHHHcC-CCccEEE--cCCC---C-hhhHHHHHHHHHhcCCCCCEEEE--CChHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 99999998 6432221 1111 1 12334455555443 4777665 666778889999999998643 455555
Q ss_pred eCc
Q 004136 267 TNT 269 (771)
Q Consensus 267 ~~~ 269 (771)
.+.
T Consensus 232 ~d~ 234 (293)
T 2iks_A 232 FGD 234 (293)
T ss_dssp ESC
T ss_pred ECC
Confidence 554
No 96
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.13 E-value=9.2e-05 Score=75.21 Aligned_cols=207 Identities=13% Similarity=0.121 Sum_probs=132.6
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
.+.+||+++|.. .++......+++.+.++. |+++. +.++..++....+....++ ++++.+||.........
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~~ 78 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKN-----GYRIL--LCNTESDLARSRSCLTLLS-GKMVDGVITMDALSELP 78 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHTHHHH-TTCCSEEEECCCGGGHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc-----CCEEE--EEeCCCCHHHHHHHHHHHH-hCCCCEEEEeCCCCChH
Confidence 567899999864 444556666666666553 56654 4456667777777777777 78898877643322222
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcchHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALL 189 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l 189 (771)
.+. .+. .++|+|..... .+. . .+..+..++...+..+++++...|.++|+++..... .. ....+.|
T Consensus 79 ~~~-~l~-~~iPvV~~~~~--~~~---~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~gf 146 (285)
T 3c3k_A 79 ELQ-NII-GAFPWVQCAEY--DPL---S---TVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYA--QHRESGY 146 (285)
T ss_dssp HHH-HHH-TTSSEEEESSC--CTT---S---SSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHH--HHHHHHH
T ss_pred HHH-HHh-cCCCEEEEccc--cCC---C---CCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccH--HHHHHHH
Confidence 233 344 89999988754 221 1 233567788888888999998889999999987643 23 4456788
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHH--hhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEE
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKK--VQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVW 264 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~--l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~ 264 (771)
++.+++.| +++. ...-.... .+-...+.+ +.+. .+++|+. .+...+..+++++++.|+..+ +...
T Consensus 147 ~~~l~~~g-~~~~-~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~v 216 (285)
T 3c3k_A 147 LNRLKFHG-LDYS-RISYAENL------DYMAGKLATFSLLKSAVKPDAIFA--ISDVLAAGAIQALTESGLSIPQDVAV 216 (285)
T ss_dssp HHHHHHHT-CCCC-EEEECSSS------SHHHHHHHHHHHHSSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHcC-CCce-EeecCCCh------HHHHHHHHHHHHHcCCCCCeEEEE--CCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 89999888 7654 11111111 223444555 4433 5777666 666778889999999998643 4444
Q ss_pred EeeCc
Q 004136 265 IVTNT 269 (771)
Q Consensus 265 i~~~~ 269 (771)
++.+.
T Consensus 217 vg~d~ 221 (285)
T 3c3k_A 217 VGFDG 221 (285)
T ss_dssp ECSBC
T ss_pred EEeCC
Confidence 44443
No 97
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=98.12 E-value=7.2e-05 Score=76.31 Aligned_cols=212 Identities=10% Similarity=0.074 Sum_probs=137.2
Q ss_pred CCcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-CCchHh
Q 004136 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEE 109 (771)
Q Consensus 32 ~~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~s~~ 109 (771)
....+||+++|.. .+.......+++.+.++. |+++ .+.++..++....+....++ .+++.+||- |.....
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~ 77 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN-----KYEA--LVATSQNSRISEREQILEFV-HLKVDAIFITTLDDVY 77 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT-----TCEE--EEEECSSCHHHHHHHHHHHH-HTTCSEEEEECSCTTT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc-----CCEE--EEECCCCCHHHHHHHHHHHH-HcCCCEEEEecCChHH
Confidence 3567899999865 344556666776666664 4544 45567778888888888888 678886664 444443
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHH-c-CCe-----EEEEEEEeCCCCCC
Q 004136 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-Y-NWR-----RVAAIYEDNVYGGD 182 (771)
Q Consensus 110 ~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~-~-~w~-----~v~ii~~~~~~g~~ 182 (771)
.......+...++|+|..... .+. .+.+..+..++...+..+++++.. . |.+ +++++.........
T Consensus 78 ~~~~~~~~~~~~iPvV~~~~~--~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~ 150 (293)
T 3l6u_A 78 IGSAIEEAKKAGIPVFAIDRM--IRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTT 150 (293)
T ss_dssp THHHHHHHHHTTCCEEEESSC--CCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHH
T ss_pred HHHHHHHHHHcCCCEEEecCC--CCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchH
Confidence 334555666779999988765 221 123456788888889999988866 4 666 99999865332100
Q ss_pred cchHHHHHHHHhcc-CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCC
Q 004136 183 SGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (771)
Q Consensus 183 ~~~~~~l~~~~~~~-g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~ 259 (771)
....+.|++.+++. | +++.....-... ..+....+.++.+. ++++|+. ++...+..++++++++|+.
T Consensus 151 ~~R~~gf~~~l~~~~g-~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~- 220 (293)
T 3l6u_A 151 NERHRGFLKGIENEPT-LSIVDSVSGNYD------PVTSERVMRQVIDSGIPFDAVYC--HNDDIAMGVLEALKKAKIS- 220 (293)
T ss_dssp HHHHHHHHHHHTTCTT-EEEEEEEECTTC------HHHHHHHHHHHHHTTCCCSEEEE--SSHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHhCCC-cEEeeeccCCCC------HHHHHHHHHHHHHhCCCCCEEEE--CCchHHHHHHHHHHhCCCC-
Confidence 45678899999998 8 877654321111 13344445555443 5676655 7777788999999999986
Q ss_pred CCeEEEeeCc
Q 004136 260 KDSVWIVTNT 269 (771)
Q Consensus 260 ~~~~~i~~~~ 269 (771)
+...++.+.
T Consensus 221 -di~vig~d~ 229 (293)
T 3l6u_A 221 -GKIVVGIDG 229 (293)
T ss_dssp -CCEEEEEEC
T ss_pred -CeEEEEecC
Confidence 344444433
No 98
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.12 E-value=0.00013 Score=74.92 Aligned_cols=204 Identities=13% Similarity=0.121 Sum_probs=131.4
Q ss_pred EEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-CCchHhHHH
Q 004136 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAV 112 (771)
Q Consensus 35 I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~s~~~~~ 112 (771)
-+||+++|.. .+.......+++.+.++. |+ +++.+.++..++....+....++ .+++.+||. |........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~-~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~~~~~~~~ 75 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA-----PD-VQLLMNDSQNDQSKQNDQIDVLL-AKGVKALAINLVDPAAAGT 75 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC-----TT-EEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSSGGGHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc-----CC-eEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCcchhHH
Confidence 5799999864 344455566666555543 44 34556677778888778788887 678887765 333333334
Q ss_pred HHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHH------------cCCeEEEEEEEeCC--
Q 004136 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK------------YNWRRVAAIYEDNV-- 178 (771)
Q Consensus 113 v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~------------~~w~~v~ii~~~~~-- 178 (771)
....+...++|+|..... .+......++.+..+..++...++.+++++.. .|.++++++.....
T Consensus 76 ~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 76 VIEKARGQNVPVVFFNKE--PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHTTTCCEEEESSC--CCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHCCCcEEEecCC--CCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 445566789999988754 22110012345667888888889989998866 67789999986533
Q ss_pred CCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC----CceEEEEEecChhHHHHHHHHHHH
Q 004136 179 YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK----QSRVFIVLQASLDMTIHLFTEANR 254 (771)
Q Consensus 179 ~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~----~~~vIv~~~~~~~~~~~il~~a~~ 254 (771)
.. ....+.|++.+++.| ..+.....+.... + .......++++.+. .+++|+. ++...+..+++++++
T Consensus 154 ~~--~~R~~gf~~~l~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~~~ai~~--~~d~~a~g~~~al~~ 224 (309)
T 2fvy_A 154 DA--EARTTYVIKELNDKG-IKTEQLQLDTAMW---D-TAQAKDKMDAWLSGPNANKIEVVIA--NNDAMAMGAVEALKA 224 (309)
T ss_dssp HH--HHHHHHHHHHHHHTT-CCEEEEEEEECTT---C-HHHHHHHHHHHHTSTTGGGCCEEEE--SSHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHHHHHHhcC-CceEEEEEecCCC---C-HHHHHHHHHHHHHhCCCCCccEEEE--CCchhHHHHHHHHHH
Confidence 23 455778899999988 6654332222111 1 12334455555443 5677665 666778889999999
Q ss_pred cC
Q 004136 255 MG 256 (771)
Q Consensus 255 ~g 256 (771)
+|
T Consensus 225 ~g 226 (309)
T 2fvy_A 225 HN 226 (309)
T ss_dssp TT
T ss_pred cC
Confidence 98
No 99
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=98.11 E-value=9.9e-05 Score=75.15 Aligned_cols=213 Identities=14% Similarity=0.093 Sum_probs=135.4
Q ss_pred CCCcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHh
Q 004136 31 IEEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (771)
Q Consensus 31 ~~~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~ 109 (771)
+..+.+||+++|.. .+.......+++.+.++. |+++. +.++..++....+....++ .+++.+||-......
T Consensus 13 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~ 84 (289)
T 2fep_A 13 SKKTTTVGVIIPDISSIFYSELARGIEDIATMY-----KYNII--LSNSDQNMEKELHLLNTML-GKQVDGIVFMGGNIT 84 (289)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHH-HTTCSEEEECCSCCC
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc-----CCEEE--EEeCCCCHHHHHHHHHHHH-hCCCCEEEEecCCCC
Confidence 35678999999864 444456666666666553 56554 4566677877777777777 788887775322111
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeC-C--CCCCcchH
Q 004136 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-V--YGGDSGKL 186 (771)
Q Consensus 110 ~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~-~--~g~~~~~~ 186 (771)
. .....+...++|+|..... .+ ... +..+..++...++.++++|...|.++++++.... . .. ....
T Consensus 85 ~-~~~~~l~~~~iPvV~~~~~--~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~ 153 (289)
T 2fep_A 85 D-EHVAEFKRSPVPIVLAASV--EE---QEE---TPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINR--SKKL 153 (289)
T ss_dssp H-HHHHHHHHSSSCEEEESCC--CT---TCC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHH--TTHH
T ss_pred H-HHHHHHHhcCCCEEEEccc--cC---CCC---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccH--HHHH
Confidence 2 2223345679999988754 22 112 2357788888889999999888999999998764 2 23 5567
Q ss_pred HHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCC-CCeE
Q 004136 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSV 263 (771)
Q Consensus 187 ~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~-~~~~ 263 (771)
+.|++.+++.| +.+.....+.... + ..+-...+.++.+. .+++|+. ++...+..+++++++.|+.. ++..
T Consensus 154 ~Gf~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~G~~vP~di~ 226 (289)
T 2fep_A 154 QGYKRALEEAN-LPFNEQFVAEGDY---T-YDSGLEALQHLMSLDKKPTAILS--ATDEMALGIIHAAQDQGLSIPEDLD 226 (289)
T ss_dssp HHHHHHHHHTT-CCCCGGGEEECCS---C-HHHHHHHHHHHTTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHHHcC-CCCChheEeeCCC---C-HHHHHHHHHHHHcCCCCCCEEEE--CCHHHHHHHHHHHHHcCCCCCCCeE
Confidence 88999999988 6543211111111 1 12334455555543 5777665 66677888999999999864 3455
Q ss_pred EEeeCc
Q 004136 264 WIVTNT 269 (771)
Q Consensus 264 ~i~~~~ 269 (771)
.++.+.
T Consensus 227 vvg~D~ 232 (289)
T 2fep_A 227 IIGFDN 232 (289)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 555444
No 100
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=98.11 E-value=0.00018 Score=74.07 Aligned_cols=208 Identities=9% Similarity=-0.017 Sum_probs=136.5
Q ss_pred EEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-CCchHhHHH
Q 004136 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAV 112 (771)
Q Consensus 35 I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~s~~~~~ 112 (771)
.+||+++|.. .+.......+++.+.++. |+++ .+.++..++....+....++ .+++.+||- |........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~ 74 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESL-----GAKV--FVQSANGNEETQMSQIENMI-NRGVDVLVIIPYNGQVLSN 74 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHT-----SCEE--EEEECTTCHHHHHHHHHHHH-HTTCSEEEEECSSTTSCHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEE--EEECCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChhhhHH
Confidence 5799999964 566778888888888775 4444 45566778888888888888 678886664 444333344
Q ss_pred HHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH-HcCCeEEEEEEEeCCCCCCcchHHHHHH
Q 004136 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-KYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (771)
Q Consensus 113 v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~-~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (771)
....+...++|+|..... .+. ... ...+..++...++.++++|. ..|-++++++.............+.|++
T Consensus 75 ~~~~~~~~~iPvV~~~~~--~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~ 147 (313)
T 3m9w_A 75 VVKEAKQEGIKVLAYDRM--IND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMK 147 (313)
T ss_dssp HHHHHHTTTCEEEEESSC--CTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEECCc--CCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHH
Confidence 556667789999988765 222 121 13567788888999999987 8899999999865332100345677888
Q ss_pred HHhcc----CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh---CCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEE
Q 004136 192 ALQNV----SSSEIQSRLVLPPISSISDPKEAVRGELKKVQD---KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (771)
Q Consensus 192 ~~~~~----g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~---~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~ 264 (771)
.+++. + +++.......... .......+.++.+ .++++|+. ++...+..+++++++.|+. ++...
T Consensus 148 ~l~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~-~di~v 218 (313)
T 3m9w_A 148 VLKPYVDSGK-IKVVGDQWVDGWL-----PENALKIMENALTANNNKIDAVVA--SNDATAGGAIQALSAQGLS-GKVAI 218 (313)
T ss_dssp HHHHHHHTTS-EEEEEEEECGGGC-----HHHHHHHHHHHHHHTTTCCCEEEE--SSHHHHHHHHHHHHTTTCT-TTSEE
T ss_pred HHHhhccCCC-EEEEeeccCCCcC-----HHHHHHHHHHHHHhCCCCeeEEEE--CCCchHHHHHHHHHHcCCC-CCcEE
Confidence 88776 6 6665433211111 1233334444433 35677665 6777788999999999987 33433
Q ss_pred Ee
Q 004136 265 IV 266 (771)
Q Consensus 265 i~ 266 (771)
++
T Consensus 219 ig 220 (313)
T 3m9w_A 219 SG 220 (313)
T ss_dssp CC
T ss_pred Ee
Confidence 33
No 101
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=98.11 E-value=0.00025 Score=72.76 Aligned_cols=213 Identities=14% Similarity=0.022 Sum_probs=139.1
Q ss_pred cEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-CCchHhHH
Q 004136 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (771)
Q Consensus 34 ~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~s~~~~ 111 (771)
.-+||++.|.. .+.......+++.+.++. |+++.+. .++..++....+....++ .+++.+||- |.......
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~-~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~ 76 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL-----NVTVEYR-GAAQYDIQEQITVLEQAI-AKNPAGIAISAIDPVELT 76 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH-----TCEEEEE-ECSSSCHHHHHHHHHHHH-HHCCSEEEECCSSTTTTH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc-----CCEEEEe-CCCcCCHHHHHHHHHHHH-HhCCCEEEEcCCCHHHHH
Confidence 35799999876 445567777888777775 4555442 467778888888888888 678886663 44443334
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHc--CCeEEEEEEEeCCCCCCcchHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALL 189 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l 189 (771)
.....+...++|+|..... .+. . +.+..+..++...++.+++++... |.++++++....... .....+.|
T Consensus 77 ~~~~~~~~~~iPvV~~~~~--~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~-~~~R~~gf 148 (305)
T 3g1w_A 77 DTINKAVDAGIPIVLFDSG--APD---S--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLN-HQERTTGF 148 (305)
T ss_dssp HHHHHHHHTTCCEEEESSC--CTT---S--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHH-HHHHHHHH
T ss_pred HHHHHHHHCCCcEEEECCC--CCC---C--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCccc-HHHHHHHH
Confidence 4455566789999988765 221 1 123457788889999999999877 899999998653321 14456788
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEee
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (771)
++.+++.| ..+.......... + .......+.++.+. ++++|+. .+...+..+++++++.|+. .+...++.
T Consensus 149 ~~~l~~~~-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~-~di~vig~ 220 (305)
T 3g1w_A 149 KETLEAEF-PAIEVIAVEDGRG---D-SLHSRRVAHQLLEDYPNLAGIFA--TEANGGVGVGDAVRLESRA-GEIQIISF 220 (305)
T ss_dssp HHHHHHHC-TTEEEEEEEECTT---C-HHHHHHHHHHHHHHCTTEEEEEE--SSHHHHHHHHHHHHHTTCT-TTSEEEEE
T ss_pred HHHHHhhC-CCCEEEEEecCCC---C-HHHHHHHHHHHHHhCCCceEEEE--CCCcchhhHHHHHHhcCCC-CCeEEEEe
Confidence 88898876 4443322222111 1 13344445554443 4565544 7777788999999999987 44555555
Q ss_pred Cc
Q 004136 268 NT 269 (771)
Q Consensus 268 ~~ 269 (771)
+.
T Consensus 221 d~ 222 (305)
T 3g1w_A 221 DT 222 (305)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 102
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=98.11 E-value=0.00019 Score=72.72 Aligned_cols=209 Identities=10% Similarity=0.117 Sum_probs=130.9
Q ss_pred EEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-CCchHhHHH
Q 004136 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAV 112 (771)
Q Consensus 35 I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~s~~~~~ 112 (771)
.+||++.|.. .++......+++.+.++. |+.+ .+.++..++....+....++ .++|.+||- |........
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~ 73 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKEL-----GYKI--IVEDSQNDSSKELSNVEDLI-QQKVDVLLINPVDSDAVVT 73 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCEE--EEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSSTTTTHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhc-----CcEE--EEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCCchhhhHH
Confidence 3699999864 445556677777776664 4554 45567778877777788888 788887664 443333223
Q ss_pred HHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHc-C-CeEEEEEEEeCCCCCCcchHHHHH
Q 004136 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-N-WRRVAAIYEDNVYGGDSGKLALLA 190 (771)
Q Consensus 113 v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~-~-w~~v~ii~~~~~~g~~~~~~~~l~ 190 (771)
....+...++|+|..... .+. . +....+..++...++.++++|... | -++++++.............+.++
T Consensus 74 ~~~~~~~~~iPvV~~~~~--~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~ 146 (283)
T 2ioy_A 74 AIKEANSKNIPVITIDRS--ANG---G--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFD 146 (283)
T ss_dssp HHHHHHHTTCCEEEESSC--CSS---S--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEecCC--CCC---c--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHH
Confidence 344456779999987644 221 1 122346677777888888888665 5 899999986533210034567888
Q ss_pred HHHhcc-CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEee
Q 004136 191 EALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (771)
Q Consensus 191 ~~~~~~-g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~ 267 (771)
+.+++. | +++..... .... ..+-...++++.+. .+++|+. ++...+..++++++++|+ ++...++.
T Consensus 147 ~al~~~~~-~~~~~~~~-~~~~-----~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~--~di~viG~ 215 (283)
T 2ioy_A 147 EAIAKYPD-IKIVAKQA-ADFD-----RSKGLSVMENILQAQPKIDAVFA--QNDEMALGAIKAIEAANR--QGIIVVGF 215 (283)
T ss_dssp HHHTTCTT-EEEEEEEE-CTTC-----HHHHHHHHHHHHHHCSCCCEEEE--SSHHHHHHHHHHHHHTTC--CCCEEEEE
T ss_pred HHHHhCCC-CEEEeecc-CCCC-----HHHHHHHHHHHHHhCCCccEEEE--CCchHHHHHHHHHHHCCC--CCcEEEEe
Confidence 999888 8 76643221 1111 12333444544433 4666554 777778899999999998 44455554
Q ss_pred Cc
Q 004136 268 NT 269 (771)
Q Consensus 268 ~~ 269 (771)
+.
T Consensus 216 D~ 217 (283)
T 2ioy_A 216 DG 217 (283)
T ss_dssp EC
T ss_pred CC
Confidence 43
No 103
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=98.09 E-value=0.00012 Score=75.13 Aligned_cols=214 Identities=10% Similarity=-0.002 Sum_probs=136.0
Q ss_pred CCcEEEEEEEeCC--CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEe-cCCCCHHHHHHHHHHHHhcCCeEEEEc-CCch
Q 004136 32 EEVTKIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIAG-METW 107 (771)
Q Consensus 32 ~~~I~IG~i~p~s--~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~-D~~~~~~~a~~~~~~li~~~~v~aviG-p~~s 107 (771)
..+.+||+++|.. .+.......+++.+.++. +|+.+.+... ++..++....+....++ .+++.+||- |...
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~----~g~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~~~ 80 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTY----SDFNISANITHYDPYDYNSFVATSQAVI-EEQPDGVMFAPTVP 80 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHT----GGGCEEEEEEEECSSCHHHHHHHHHHHH-TTCCSEEEECCSSG
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHH----HhCCeEEEEEcCCCCCHHHHHHHHHHHH-hcCCCEEEECCCCh
Confidence 4678999999984 445566667777666664 2456666654 34567777777778887 788887664 4444
Q ss_pred HhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCC--eEEEEEEEeC------CC
Q 004136 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNW--RRVAAIYEDN------VY 179 (771)
Q Consensus 108 ~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w--~~v~ii~~~~------~~ 179 (771)
.........+...++|+|..... .+.. +.+-.+..++...++.+++++...+. ++++++.... ..
T Consensus 81 ~~~~~~~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~ 153 (304)
T 3gbv_A 81 QYTKGFTDALNELGIPYIYIDSQ--IKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQ 153 (304)
T ss_dssp GGTHHHHHHHHHHTCCEEEESSC--CTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHH
T ss_pred HHHHHHHHHHHHCCCeEEEEeCC--CCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchh
Confidence 33444555666779999988765 2211 12345778888899999999988777 9999998542 12
Q ss_pred CCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCC
Q 004136 180 GGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (771)
Q Consensus 180 g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~ 257 (771)
. ....+.|++.+++.| ..+..........+. ......+.++.+. ++++|+. ..+. +..++++++++|+
T Consensus 154 ~--~~R~~gf~~~l~~~g-~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ai~~-~~d~--a~g~~~al~~~g~ 223 (304)
T 3gbv_A 154 Q--ESREIGFRQYMQEHH-PACNILELNLHADLN----IEDSRMLDDFFREHPDVKHGIT-FNSK--VYIIGEYLQQRRK 223 (304)
T ss_dssp H--HHHHHHHHHHHHHHC-TTSEEEEEEEESSCS----SCHHHHHHHHHHHCTTCCEEEE-SSSC--THHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHHHhhC-CCcEEEEeeecCCCH----HHHHHHHHHHHHhCCCeEEEEE-cCcc--hHHHHHHHHHcCC
Confidence 2 445778889998887 433222111111111 1123333433332 5788777 5544 7789999999998
Q ss_pred CCCCeEEEeeCc
Q 004136 258 VGKDSVWIVTNT 269 (771)
Q Consensus 258 ~~~~~~~i~~~~ 269 (771)
++...++.+.
T Consensus 224 --~di~vig~d~ 233 (304)
T 3gbv_A 224 --SDFSLIGYDL 233 (304)
T ss_dssp --CSCEEEEESC
T ss_pred --CCcEEEEeCC
Confidence 4455555544
No 104
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=98.08 E-value=0.00012 Score=75.14 Aligned_cols=213 Identities=14% Similarity=0.094 Sum_probs=132.7
Q ss_pred cEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCch-HhHH
Q 004136 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW-EETA 111 (771)
Q Consensus 34 ~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s-~~~~ 111 (771)
+++||++.|.. .++......+++.+.++. |+.+ .+.++..++....+....++ .+++.+||..... ....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~l--~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~ 73 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR-----GITL--KIADGQQKQENQIKAVRSFV-AQGVDAIFIAPVVATGWE 73 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH-----TCEE--EEEECTTCHHHHHHHHHHHH-HHTCSEEEECCSSSSSCH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc-----CCEE--EEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChhhHH
Confidence 47899999975 344556667777666664 4554 44567778877777778887 6788877653332 2212
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcC---CeEEEEEEEeCC--CCCCcchH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN---WRRVAAIYEDNV--YGGDSGKL 186 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~---w~~v~ii~~~~~--~g~~~~~~ 186 (771)
.....+...++|+|..... .+.. ...+++..+..++...++.++++|...+ .++++++..... .. ....
T Consensus 74 ~~~~~~~~~~iPvV~~~~~--~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~--~~R~ 147 (306)
T 2vk2_A 74 PVLKEAKDAEIPVFLLDRS--IDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVA--IDRK 147 (306)
T ss_dssp HHHHHHHHTTCCEEEESSC--CCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHH--HHHH
T ss_pred HHHHHHHHCCCCEEEecCC--CCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhH--HHHH
Confidence 3334455679999987754 2211 1111345677888888888888887665 789999986533 22 4456
Q ss_pred HHHHHHHhccCCe-EEEEeeecCCCCCCCCchHHHHHHHHHhhh-----CCceEEEEEecChhHHHHHHHHHHHcCCCCC
Q 004136 187 ALLAEALQNVSSS-EIQSRLVLPPISSISDPKEAVRGELKKVQD-----KQSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (771)
Q Consensus 187 ~~l~~~~~~~g~~-~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~-----~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~ 260 (771)
+.|++.+++.| . ++.... ..... ..+-...++++.+ ..+++|+. .+...+..+++++++.|+..+
T Consensus 148 ~Gf~~al~~~g-~~~~~~~~-~~~~~-----~~~~~~~~~~ll~~~~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP 218 (306)
T 2vk2_A 148 KGFAEAIKNAP-NIKIIRSQ-SGDFT-----RSKGKEVMESFIKAENNGKNICMVYA--HNDDMVIGAIQAIKEAGLKPG 218 (306)
T ss_dssp HHHHHHTTTCT-TEEEEEEE-ECTTC-----HHHHHHHHHHHHHHTTTTTTCCEEEE--SSHHHHHHHHHHHHHTTCCBT
T ss_pred HHHHHHHhhCC-CeEEEEec-cCCCc-----HHHHHHHHHHHHHhCCCCCCeeEEEE--CCchHHHHHHHHHHHcCCCCC
Confidence 78899998888 5 322211 11111 1223334444433 35777765 666778889999999998643
Q ss_pred -CeEEEeeCc
Q 004136 261 -DSVWIVTNT 269 (771)
Q Consensus 261 -~~~~i~~~~ 269 (771)
+...++.+.
T Consensus 219 ~di~vig~D~ 228 (306)
T 2vk2_A 219 KDILTGSIDG 228 (306)
T ss_dssp TTBEEEEEEC
T ss_pred CCeEEEeecC
Confidence 455555444
No 105
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=98.07 E-value=5.8e-05 Score=76.97 Aligned_cols=212 Identities=11% Similarity=0.087 Sum_probs=136.1
Q ss_pred CCcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhH
Q 004136 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (771)
Q Consensus 32 ~~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~ 110 (771)
...-+||+++|.. .+.......+++.+.++. |+.+ .+.++..++....+....++ .+++.+||-..... .
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~-~ 76 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK-----GYSV--LLANTAEDIVREREAVGQFF-ERRVDGLILAPSEG-E 76 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEE--EEEECTTCHHHHHHHHHHHH-HTTCSEEEECCCSS-C
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCCHHHHHHHHHHHH-HCCCCEEEEeCCCC-C
Confidence 3567899999875 344456666776666653 4544 45566667877777777777 78888777433322 3
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcchHHH
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLAL 188 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~ 188 (771)
......+...++|+|..... .+ . +.+..+..+....++.++++|...|.++++++..... .. ....+.
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~--~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~g 146 (291)
T 3egc_A 77 HDYLRTELPKTFPIVAVNRE--LR---I---PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTS--RERLKG 146 (291)
T ss_dssp CHHHHHSSCTTSCEEEESSC--CC---C---TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHH--HHHHHH
T ss_pred hHHHHHhhccCCCEEEEecc--cC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCH--HHHHHH
Confidence 34555677889999988765 22 1 2234577888889999999998889999999987643 22 456788
Q ss_pred HHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh--CCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEE
Q 004136 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWI 265 (771)
Q Consensus 189 l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i 265 (771)
|++.+++.| +.+............ ......+.++.+ ..+++|+. .+...+..++++++++|+..+ +...+
T Consensus 147 f~~~l~~~g-~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vv 219 (291)
T 3egc_A 147 FRAAMSAAG-LPVRQEWIAAGGVRA----DNGRDGAIKVLTGADRPTALLT--SSHRITEGAMQALNVLGLRYGPDVEIV 219 (291)
T ss_dssp HHHHHHHTT-CCCCGGGEEC----------CCHHHHHHHHTC-CCCSEEEE--SSHHHHHHHHHHHHHHTCCBTTTBEEE
T ss_pred HHHHHHHcC-CCCCHHHeEeCCCCh----hHHHHHHHHHHhCCCCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 899999888 654322111111111 112223333332 35777665 777778899999999998643 45555
Q ss_pred eeCc
Q 004136 266 VTNT 269 (771)
Q Consensus 266 ~~~~ 269 (771)
+.+.
T Consensus 220 g~d~ 223 (291)
T 3egc_A 220 SFDN 223 (291)
T ss_dssp EESC
T ss_pred EecC
Confidence 5443
No 106
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.01 E-value=0.00011 Score=75.24 Aligned_cols=203 Identities=12% Similarity=0.192 Sum_probs=128.1
Q ss_pred CCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCC--CCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHh
Q 004136 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~--~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~ 109 (771)
.+++|||++--...+.-.....|++- ++++.| .|..+++.+.|.++|+..+...+++|+ ++++++|++. .+..
T Consensus 6 ~~~~~igi~q~~~hp~ld~~~~G~~~---~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~-~~~~DlIiai-~t~a 80 (302)
T 3lkv_A 6 AKTAKVAVSQIVEHPALDATRQGLLD---GLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFV-GENPDVLVGI-ATPT 80 (302)
T ss_dssp -CCEEEEEEESCCCHHHHHHHHHHHH---HHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHH-TTCCSEEEEE-SHHH
T ss_pred cCCceEEEEEeecChhHHHHHHHHHH---HHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHH-hcCCcEEEEc-CCHH
Confidence 47899998855443333445556654 455555 467899999999999999999999999 7899999864 3344
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCccC------CCCceEEEeecCcHHHHHHHHHHHHHc--CCeEEEEEEEeCCCCC
Q 004136 110 TAVVAEIASRVQVPILSFAAPAVTPLSMS------RRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGG 181 (771)
Q Consensus 110 ~~~v~~~~~~~~iP~Is~~a~~~~~~l~~------~~~p~~fr~~p~~~~~~~a~~~~l~~~--~w~~v~ii~~~~~~g~ 181 (771)
+.+++. ...++|+|-.+.+ +|.-.. ...+++.-+. +.......++++++. +.++++++|+...-+.
T Consensus 81 a~a~~~--~~~~iPVVf~~v~--dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s 154 (302)
T 3lkv_A 81 AQALVS--ATKTIPIVFTAVT--DPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANA 154 (302)
T ss_dssp HHHHHH--HCSSSCEEEEEES--CTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHH
T ss_pred HHHHHh--hcCCCCeEEEecC--CcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccH
Confidence 454443 3457998877665 443321 1123444333 222244456666554 6899999997654221
Q ss_pred CcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHH---HHHHHHHHHcCC
Q 004136 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT---IHLFTEANRMGL 257 (771)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~---~~il~~a~~~g~ 257 (771)
....+.+++.+++.| +++...... .. .++.+.++.+.. +.+++++ ..+.... ..+...+.+.+.
T Consensus 155 -~~~~~~~~~~~~~~g-~~~v~~~~~--~~------~~~~~~~~~l~~-~~d~i~~-~~d~~~~~~~~~i~~~~~~~~i 221 (302)
T 3lkv_A 155 -VSLMELLKLSAAKHG-IKLVEATAL--KS------ADVQSATQAIAE-KSDVIYA-LIDNTVASAIEGMIVAANQAKT 221 (302)
T ss_dssp -HHHHHHHHHHHHHTT-CEEEEEECS--SG------GGHHHHHHHHHT-TCSEEEE-CSCHHHHHTHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHcC-CEEEEEecC--Ch------HHHHHHHHhccC-CeeEEEE-eCCcchhhHHHHHHHHHhhcCC
Confidence 445677888899999 887654321 11 356777776654 6888888 6665432 233444444443
No 107
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=98.00 E-value=0.00016 Score=74.11 Aligned_cols=216 Identities=10% Similarity=-0.005 Sum_probs=134.7
Q ss_pred cEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE-cCCchHhHH
Q 004136 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEETA 111 (771)
Q Consensus 34 ~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~avi-Gp~~s~~~~ 111 (771)
+++||+++|.. .++......+++.+.++. |+++ .+.++ .++....+....++ .+++.+|| .|..+....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~-~~~~~~~~~i~~l~-~~~vdgiii~~~~~~~~~ 72 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL-----GFEV--IKIAV-PDGEKTLNAIDSLA-ASGAKGFVICTPDPKLGS 72 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH-----TEEE--EEEEC-CSHHHHHHHHHHHH-HTTCCEEEEECSCGGGHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc-----CCEE--EEeCC-CCHHHHHHHHHHHH-HcCCCEEEEeCCCchhhH
Confidence 58999999875 455567777777777776 4554 45566 48888888888888 67788665 455444555
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH-HcCC-----eEEEEEE-EeCC--CCCC
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-KYNW-----RRVAAIY-EDNV--YGGD 182 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~-~~~w-----~~v~ii~-~~~~--~g~~ 182 (771)
.....+...++|+|..... .+.......+.+..+..++...++.+++++. +.+- .+++++. .... ..
T Consensus 73 ~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~-- 148 (306)
T 8abp_A 73 AIVAKARGYDMKVIAVDDQ--FVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTA-- 148 (306)
T ss_dssp HHHHHHHHTTCEEEEESSC--CBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHH--
T ss_pred HHHHHHHHCCCcEEEeCCC--CCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHH--
Confidence 5556677789999988743 2222111111233467777777887777764 3233 3888886 3322 22
Q ss_pred cchHHHHHHHHhccCCe---EEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceE-EEEEecChhHHHHHHHHHHHcC
Q 004136 183 SGKLALLAEALQNVSSS---EIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRV-FIVLQASLDMTIHLFTEANRMG 256 (771)
Q Consensus 183 ~~~~~~l~~~~~~~g~~---~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~v-Iv~~~~~~~~~~~il~~a~~~g 256 (771)
....+.|++.+++.| . ++..... .... ...-...+.++.+. +++. +++ +++...+..++++++++|
T Consensus 149 ~~R~~Gf~~~l~~~g-~~~~~~~~~~~-~~~~-----~~~~~~~~~~~l~~~~~~~a~~i~-~~nD~~A~g~~~al~~~g 220 (306)
T 8abp_A 149 RRRTTGSMDALKAAG-FPEKQIYQVPT-KSND-----IPGAFDAANSMLVQHPEVKHWLIV-GMNDSTVLGGVRATEGQG 220 (306)
T ss_dssp HHHHHHHHHHHHHHT-CCGGGEEEEEC-SSSS-----HHHHHHHHHHHHTTCTTCSEEEEE-CSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC-CCCcEEEeecc-CCCC-----hHHHHHHHHHHHHhCCCCceEEEE-eCCcHHHHHHHHHHHHcC
Confidence 445688888998877 4 2332221 1111 13344555555544 4555 345 677788889999999999
Q ss_pred CCCCCeEEEeeCcc
Q 004136 257 LVGKDSVWIVTNTV 270 (771)
Q Consensus 257 ~~~~~~~~i~~~~~ 270 (771)
+..++...++.+..
T Consensus 221 ~~v~di~vvG~D~~ 234 (306)
T 8abp_A 221 FKAADIIGIGINGV 234 (306)
T ss_dssp CCGGGEEEEEESSG
T ss_pred CCCCceEEEEeCcH
Confidence 86333455555443
No 108
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.99 E-value=0.00016 Score=75.70 Aligned_cols=219 Identities=12% Similarity=0.049 Sum_probs=135.4
Q ss_pred CCcEEEEEEEeC--CCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCC--CCHHHHHHHHHHHHhcCCeEEEEcCCch
Q 004136 32 EEVTKIGAIVDA--NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN--RDPFQAATAAQELINKEKVKVIAGMETW 107 (771)
Q Consensus 32 ~~~I~IG~i~p~--s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~--~~~~~a~~~~~~li~~~~v~aviGp~~s 107 (771)
....+||+++|. +.+.......+++.+.++. |+++.+...++. .++....+....++ .+++.+||-+...
T Consensus 41 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~ 114 (342)
T 1jx6_A 41 QRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL-----NINYQLNQVFTRPNADIKQQSLSLMEAL-KSKSDYLIFTLDT 114 (342)
T ss_dssp SSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT-----TCCEEEEEEECCTTCCHHHHHHHHHHHH-HTTCSEEEECCSS
T ss_pred CCceEEEEEecCCcccHHHHHHHHHHHHHHHHc-----CCeEEEEecCCCCccCHHHHHHHHHHHH-hcCCCEEEEeCCh
Confidence 567899999996 4455556667777666553 567777665665 67777777788887 6789887765443
Q ss_pred HhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHc-C-CeEEEEEEEeCC-CCCCcc
Q 004136 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-N-WRRVAAIYEDNV-YGGDSG 184 (771)
Q Consensus 108 ~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~-~-w~~v~ii~~~~~-~g~~~~ 184 (771)
.........+...++|+|...... .+.......+.+..+..++...+..+++++... | .+++++|..... .. ..
T Consensus 115 ~~~~~~~~~~~~~~ip~V~~~~~~-~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~--~~ 191 (342)
T 1jx6_A 115 TRHRKFVEHVLDSTNTKLILQNIT-TPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYIS--DV 191 (342)
T ss_dssp STTHHHHHHHHHHCSCEEEEETCC-SCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHH--HH
T ss_pred HhHHHHHHHHHHcCCCEEEEecCC-CcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchh--hH
Confidence 322233334455689988763220 121000112334457788888889999988764 6 899999986533 22 45
Q ss_pred hHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCCCe
Q 004136 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (771)
Q Consensus 185 ~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~ 262 (771)
..+.|++.+++.| . +.....+.... + ..+-...+.++.+. .+++|+. .+...+..+++++++.|+ ++.
T Consensus 192 R~~Gf~~~l~~~~-~-~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~g~--~di 261 (342)
T 1jx6_A 192 RGDTFIHQVNRDN-N-FELQSAYYTKA---T-KQSGYDAAKASLAKHPDVDFIYA--CSTDVALGAVDALAELGR--EDI 261 (342)
T ss_dssp HHHHHHHHHHHHH-C-CEEEEEECCCS---S-HHHHHHHHHHHHHHCCCCSEEEE--SSHHHHHHHHHHHHHHTC--TTS
T ss_pred HHHHHHHHHHhCC-C-cEEEEEecCCC---C-HHHHHHHHHHHHHhCCCccEEEE--CCChhHHHHHHHHHHcCC--CCc
Confidence 5778889998888 5 22221222111 1 12233344444432 4677665 666778889999999998 444
Q ss_pred EEEeeCc
Q 004136 263 VWIVTNT 269 (771)
Q Consensus 263 ~~i~~~~ 269 (771)
..++.+.
T Consensus 262 ~vvg~D~ 268 (342)
T 1jx6_A 262 MINGWGG 268 (342)
T ss_dssp EEBCSBC
T ss_pred EEEEeCC
Confidence 4444433
No 109
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.96 E-value=0.00021 Score=74.29 Aligned_cols=211 Identities=11% Similarity=0.098 Sum_probs=133.5
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
...+||+++|.. .+.......+++.+.++. |+.+.+ .++..++....+....++ .+++.++|.........
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~~ 133 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMY-----KYNMIL--ANSDNDVEKEEKVLETFL-SKQVDGIVYMGSSLDEK 133 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHH-HTTCSEEEECSSCCCHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCEEEE--EECCCChHHHHHHHHHHH-hCCCCEEEEeCCCCCHH
Confidence 567899999864 444456666666666553 555544 466667777777777777 78898777533211122
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcchHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALL 189 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l 189 (771)
.+ ..+...++|+|..... .+ ... +..+..++...+..++++|...|.+++++|..... .. ....+.|
T Consensus 134 ~~-~~l~~~~iPvV~~~~~--~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~Gf 202 (332)
T 2o20_A 134 IR-TSLKNSRTPVVLVGTI--DG---DKE---IPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVEN--TERMVGY 202 (332)
T ss_dssp HH-HHHHHHCCCEEEESCC--CT---TSC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHH--HHHHHHH
T ss_pred HH-HHHHhCCCCEEEEccc--cC---CCC---CCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccH--HHHHHHH
Confidence 22 3334579999987654 22 112 23467788888888999998889999999987643 22 4456788
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEeeC
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIVTN 268 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~~~ 268 (771)
++.+++.| +.+.....+.... + ..+-...+.++.+..+++|+. ++...+..+++++++.|+..+ +...++.+
T Consensus 203 ~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~ai~~--~~d~~A~g~~~al~~~G~~vP~disvig~D 275 (332)
T 2o20_A 203 QEALLEAN-IEFDENLVFEGNY---S-YEQGKALAERLLERGATSAVV--SHDTVAVGLLSAMMDKGVKVPEDFEIISGA 275 (332)
T ss_dssp HHHHHHTT-CCCCGGGEECSCC---S-HHHHHHHHHHHHHTTCCEEEE--SCHHHHHHHHHHHHHTTCCTTTTCEEEESS
T ss_pred HHHHHHcC-CCCChhhEEeCCC---C-HHHHHHHHHHHhccCCCEEEE--CChHHHHHHHHHHHHcCCCCccCEEEEEeC
Confidence 99999998 6543221222111 1 122233444443337888776 666778889999999998643 45555544
Q ss_pred c
Q 004136 269 T 269 (771)
Q Consensus 269 ~ 269 (771)
.
T Consensus 276 ~ 276 (332)
T 2o20_A 276 N 276 (332)
T ss_dssp C
T ss_pred C
Confidence 4
No 110
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=97.95 E-value=7e-05 Score=78.25 Aligned_cols=214 Identities=10% Similarity=0.065 Sum_probs=139.1
Q ss_pred CcEEEEEEEeC---CCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHh
Q 004136 33 EVTKIGAIVDA---NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (771)
Q Consensus 33 ~~I~IG~i~p~---s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~ 109 (771)
..-+||+++|. +.++......+++.+.++. |+.+ .+.++..++....+....++ .+++.+||-......
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~ 131 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK-----GRQL--LLADGKHSAEEERQAIQYLL-DLRCDAIMIYPRFLS 131 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT-----TCEE--EEEECTTSHHHHHHHHHHHH-HTTCSEEEECCSSSC
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHC-----CCEE--EEEeCCCChHHHHHHHHHHH-hCCCCEEEEeCCCCC
Confidence 46789999997 3444556666666666654 4554 45567777887777777777 788887775333323
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHH
Q 004136 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (771)
Q Consensus 110 ~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (771)
...+...+...++|+|..... .+. ...+ .+..++...+..++++|...|.++++++.............+.|
T Consensus 132 ~~~~~~~~~~~~iPvV~~~~~--~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 203 (338)
T 3dbi_A 132 VDEIDDIIDAHSQPIMVLNRR--LRK---NSSH---SVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGY 203 (338)
T ss_dssp HHHHHHHHHHCSSCEEEESSC--CSS---SGGG---EECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCEEEEcCC--CCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHH
Confidence 345667778889999987755 222 1222 36778888888899999888999999998653321004557889
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh--CCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEe
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIV 266 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~ 266 (771)
++.+++.| +.+.....+.... + ..+-...+.++.+ ..+++|+. ++...+..++++++++|+..+ +...++
T Consensus 204 ~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~di~vvg 276 (338)
T 3dbi_A 204 KDALAQHG-IALNEKLIANGKW---T-PASGAEGVEMLLERGAKFSALVA--SNDDMAIGAMKALHERGVAVPEQVSVIG 276 (338)
T ss_dssp HHHHHHTT-CCCCGGGEECCCS---S-HHHHHHHHHHHHHTTCCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHCC-CCCCcceEEeCCC---C-HHHHHHHHHHHHcCCCCCeEEEE--CChHHHHHHHHHHHHcCCCCCCCeEEEE
Confidence 99999998 6543222222111 1 1233344444443 35777665 667778889999999998644 455555
Q ss_pred eCc
Q 004136 267 TNT 269 (771)
Q Consensus 267 ~~~ 269 (771)
.+.
T Consensus 277 ~D~ 279 (338)
T 3dbi_A 277 FDD 279 (338)
T ss_dssp ESC
T ss_pred ECC
Confidence 543
No 111
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.92 E-value=0.00015 Score=73.62 Aligned_cols=211 Identities=15% Similarity=0.090 Sum_probs=132.5
Q ss_pred CcEEEEEEEeC-----CCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCch
Q 004136 33 EVTKIGAIVDA-----NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (771)
Q Consensus 33 ~~I~IG~i~p~-----s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s 107 (771)
.+-+||+++|. +.+.......+++.+.++. |+++. +.++..++....+....++ .+++.+||.....
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~ 74 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV-----NYFVL--PFPFSEDRSQIDIYRDLIR-SGNVDGFVLSSIN 74 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT-----TCEEE--ECCCCSSTTCCHHHHHHHH-TTCCSEEEECSCC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHc-----CCEEE--EEeCCCchHHHHHHHHHHH-cCCCCEEEEeecC
Confidence 34689999986 4455567777777777663 45554 4555555555555566666 7888877753222
Q ss_pred HhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcch
Q 004136 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGK 185 (771)
Q Consensus 108 ~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~ 185 (771)
... .....+...++|+|..... .+ ... +..+..++...++.++++|...|.+++++|..... .. ...
T Consensus 75 ~~~-~~~~~l~~~~iPvV~~~~~--~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R 143 (287)
T 3bbl_A 75 YND-PRVQFLLKQKFPFVAFGRS--NP---DWD---FAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVG--NDR 143 (287)
T ss_dssp TTC-HHHHHHHHTTCCEEEESCC--ST---TCC---CCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHH--HHH
T ss_pred CCc-HHHHHHHhcCCCEEEECCc--CC---CCC---CCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccH--HHH
Confidence 111 2333445679999987654 22 112 23467788888888899987779999999986533 23 455
Q ss_pred HHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh-C---CceEEEEEecChhHHHHHHHHHHHcCCCC-C
Q 004136 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-K---QSRVFIVLQASLDMTIHLFTEANRMGLVG-K 260 (771)
Q Consensus 186 ~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~---~~~vIv~~~~~~~~~~~il~~a~~~g~~~-~ 260 (771)
.+.|++.+++.| +.+.....+.... + ..+-.+.++++.+ . ++++|+. .+...+..+++++++.|+.. +
T Consensus 144 ~~Gf~~~l~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~vP~ 216 (287)
T 3bbl_A 144 LQGYLEAMQTAQ-LPIETGYILRGEG---T-FEVGRAMTLHLLDLSPERRPTAIMT--LNDTMAIGAMAAARERGLTIGT 216 (287)
T ss_dssp HHHHHHHHHHTT-CCCCGGGEEECCS---S-HHHHHHHHHHHHTSCTTTSCSEEEE--SSHHHHHHHHHHHHHTTCCBTT
T ss_pred HHHHHHHHHHcC-CCCChhhEEeCCC---C-HHHHHHHHHHHHhhCCCCCCcEEEE--CCcHHHHHHHHHHHHcCCCCCC
Confidence 778899999988 6543211111111 1 1233445555544 3 5677666 66677888999999999864 3
Q ss_pred CeEEEeeCc
Q 004136 261 DSVWIVTNT 269 (771)
Q Consensus 261 ~~~~i~~~~ 269 (771)
+...++.+.
T Consensus 217 di~vig~d~ 225 (287)
T 3bbl_A 217 DLAIIGFDD 225 (287)
T ss_dssp TBEEEEESC
T ss_pred CEEEEEECC
Confidence 455555544
No 112
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.92 E-value=9e-05 Score=75.49 Aligned_cols=210 Identities=16% Similarity=0.117 Sum_probs=121.8
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
.+.+||+++|.. .+.......+++.+.++. |+++.+. .++..++....+....++ .+++.++|........
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~-~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~- 78 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKN-----GYNLIIV-YSGSADPEEQKHALLTAI-ERPVMGILLLSIALTD- 78 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTT-----TCEEEEE-C----------CHHHHHH-SSCCSEEEEESCC----
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCeEEEE-eCCCCCHHHHHHHHHHHH-hcCCCEEEEecccCCH-
Confidence 567899999854 444455666666665543 4555443 165556666666667777 6788877753322222
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcchHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALL 189 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l 189 (771)
.....+...++|+|..... .+. + +..+..++...+..+++++...|.++++++..... .. ....+.|
T Consensus 79 ~~~~~l~~~~iPvV~~~~~--~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~gf 147 (290)
T 3clk_A 79 DNLQLLQSSDVPYCFLSMG--FDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTG--RKRLAGY 147 (290)
T ss_dssp -CHHHHHCC--CEEEESCC----C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTH--HHHHHHH
T ss_pred HHHHHHHhCCCCEEEEcCC--CCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcch--HHHHHHH
Confidence 2333455689999987754 221 2 34577888888899999998889999999986532 33 5567889
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhh-hCCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEee
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-DKQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIVT 267 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~-~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~~ 267 (771)
++.+++.| +.+.....+.... + ..+-.+.+.++. ..++++|+. .+...+..+++++++.|+..+ +...++.
T Consensus 148 ~~~l~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vvg~ 220 (290)
T 3clk_A 148 KKALKEAN-IAINQEWIKPGDY---S-YTSGEQAMKAFGKNTDLTGIIA--ASDMTAIGILNQASSFGIEVPKDLSIVSI 220 (290)
T ss_dssp HHHHHHTT-CCCCGGGEECCCS---S-HHHHHHHHHHHCTTCCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHHcC-CCCCcceEEcCCC---C-hhhHHHHHHHHhccCCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence 99999988 6543211121111 1 123334455554 346787766 666678889999999998643 3444444
Q ss_pred C
Q 004136 268 N 268 (771)
Q Consensus 268 ~ 268 (771)
+
T Consensus 221 d 221 (290)
T 3clk_A 221 D 221 (290)
T ss_dssp E
T ss_pred C
Confidence 3
No 113
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.90 E-value=0.00022 Score=71.84 Aligned_cols=209 Identities=11% Similarity=0.053 Sum_probs=131.0
Q ss_pred cEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-CCchHhHH
Q 004136 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (771)
Q Consensus 34 ~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~s~~~~ 111 (771)
+-+||+++|.. .+.......+++.+.++. |+++. +.++..++....+....++ .+++.++|- +.... .
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~-~- 72 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA-----GYQLL--LGYSDYSIEQEEKLLSTFL-ESRPAGVVLFGSEHS-Q- 72 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT-----SCEEC--CEECTTCHHHHHHHHHHHH-TSCCCCEEEESSCCC-H-
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC-----CCEEE--EEcCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCC-H-
Confidence 45799999864 344455666666666553 45544 4466667777777777777 678886553 32221 1
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcchHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALL 189 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l 189 (771)
.....+...++|+|..... .+ . +.+..+..++...+..+++++...|.++++++..... .. ....+.|
T Consensus 73 ~~~~~l~~~~iPvV~~~~~--~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~gf 142 (275)
T 3d8u_A 73 RTHQLLEASNTPVLEIAEL--SS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTL--QRQLHGW 142 (275)
T ss_dssp HHHHHHHHHTCCEEEESSS--CS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHH--HHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeec--cC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchH--HHHHHHH
Confidence 2333445579999987654 22 1 2234577888888888999998889999999987543 23 4557788
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEe
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIV 266 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~ 266 (771)
++.+++.| +.+.....+.... + ..+....+.++.+. .+++|+. .+...+..+++++++.|+..+ +...++
T Consensus 143 ~~~l~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vvg 215 (275)
T 3d8u_A 143 QSAMIENY-LTPDHFLTTHEAP---S-SQLGAEGLAKLLLRDSSLNALVC--SHEEIAIGALFECHRRVLKVPTDIAIIC 215 (275)
T ss_dssp HHHHHHTT-CCCCCEEECSSCC---C-HHHHHHHHHHHHTTCTTCCEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHcC-CCCCccEEEeCCC---C-hhHHHHHHHHHHhCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 89999988 6543222221111 1 12334445555443 4777665 666778889999999998643 444444
Q ss_pred eCc
Q 004136 267 TNT 269 (771)
Q Consensus 267 ~~~ 269 (771)
.+.
T Consensus 216 ~d~ 218 (275)
T 3d8u_A 216 LEG 218 (275)
T ss_dssp SSC
T ss_pred cCC
Confidence 443
No 114
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.89 E-value=0.00028 Score=71.80 Aligned_cols=215 Identities=9% Similarity=0.091 Sum_probs=135.7
Q ss_pred CCcEEEEEEEeC-----C-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 004136 32 EEVTKIGAIVDA-----N-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME 105 (771)
Q Consensus 32 ~~~I~IG~i~p~-----s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~ 105 (771)
...-+||+++|. . .+.......+++-+.++. |+++ .+.++..++....+....+. .+++.+||-..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~~~-~~~vdgiIi~~ 77 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE-----GYAL--YMSTGETEEEIFNGVVKMVQ-GRQIGGIILLY 77 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT-----TCEE--EECCCCSHHHHHHHHHHHHH-TTCCCEEEESC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc-----CCEE--EEEeCCCCHHHHHHHHHHHH-cCCCCEEEEeC
Confidence 356789999998 3 445556667776666654 4544 44666656655555555565 78898776432
Q ss_pred chHhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcch
Q 004136 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (771)
Q Consensus 106 ~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (771)
.... ......+...++|+|..... .+.. +.+..+..+....++.+++++...|.++++++............
T Consensus 78 ~~~~-~~~~~~l~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R 149 (292)
T 3k4h_A 78 SREN-DRIIQYLHEQNFPFVLIGKP--YDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDR 149 (292)
T ss_dssp CBTT-CHHHHHHHHTTCCEEEESCC--SSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHH
T ss_pred CCCC-hHHHHHHHHCCCCEEEECCC--CCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHH
Confidence 2222 23445566779999987755 2211 11334778888889999999988899999999876442100445
Q ss_pred HHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCC-Ce
Q 004136 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DS 262 (771)
Q Consensus 186 ~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~ 262 (771)
.+.|++.+++.| ..+.....+.... + .......+.++.+. .+++|+. ++...+..++++++++|+..+ +.
T Consensus 150 ~~gf~~~l~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di 222 (292)
T 3k4h_A 150 LAGMSDALKLAD-IVLPKEYILHFDF---S-RESGQQAVEELMGLQQPPTAIMA--TDDLIGLGVLSALSKKGFVVPKDV 222 (292)
T ss_dssp HHHHHHHHHHTT-CCCCGGGEEECCS---S-HHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHHHHcC-CCCChheEEecCC---C-HHHHHHHHHHHHcCCCCCcEEEE--cChHHHHHHHHHHHHhCCCCCCeE
Confidence 788999999988 6543221111111 1 13344555555544 5677665 677778899999999998643 34
Q ss_pred EEEeeCc
Q 004136 263 VWIVTNT 269 (771)
Q Consensus 263 ~~i~~~~ 269 (771)
..++.+.
T Consensus 223 ~vig~d~ 229 (292)
T 3k4h_A 223 SIVSFNN 229 (292)
T ss_dssp EEEEESC
T ss_pred EEEEecC
Confidence 4454443
No 115
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.88 E-value=8.4e-05 Score=75.23 Aligned_cols=206 Identities=11% Similarity=0.038 Sum_probs=130.5
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
..-+||+++|.. .+.......+++.+.++. |+.+.+. +.. ++....+....++ .+++.+|| ........
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~--~~~-~~~~~~~~~~~l~-~~~vdgiI-~~~~~~~~ 73 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK-----GYRLSVI--DSL-TSQAGTDPITSAL-SMRPDGII-IAQDIPDF 73 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG-----TCEEEEE--CSS-SSCSSSCHHHHHH-TTCCSEEE-EESCC---
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC-----CCEEEEE--eCC-CchHHHHHHHHHH-hCCCCEEE-ecCCCChh
Confidence 567899999875 456667777777766654 4555544 443 4444445556666 78888888 32222222
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (771)
.+.. .++|+|..... .+ .....+ .+..++...++.+++++...|.++++++....... ....+.|++
T Consensus 74 ~~~~----~~iPvV~~~~~--~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~--~~R~~gf~~ 140 (280)
T 3gyb_A 74 TVPD----SLPPFVIAGTR--IT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAG--LRRFESFEA 140 (280)
T ss_dssp ---------CCCEEEESCC--CS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHH--HHHHHHHHH
T ss_pred hHhh----cCCCEEEECCC--CC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchH--HHHHHHHHH
Confidence 2222 89999988765 31 112223 46778888899999999888999999998765434 677888999
Q ss_pred HHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEeeC
Q 004136 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIVTN 268 (771)
Q Consensus 192 ~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~~~ 268 (771)
.+++.| ..+.... ..... + .......+.++.+. .+++|+. ++...+..++++++++|+..+ +...++.+
T Consensus 141 ~l~~~~-~~~~~~~-~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 141 TMRAHG-LEPLSND-YLGPA---V-EHAGYTETLALLKEHPEVTAIFS--SNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp HHHHTT-CCCEECC-CCSCC---C-HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHHHcC-cCCCccc-ccCCC---C-HHHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 999999 6655333 22111 1 12333444444433 4677665 677788899999999998643 44555544
Q ss_pred c
Q 004136 269 T 269 (771)
Q Consensus 269 ~ 269 (771)
.
T Consensus 213 ~ 213 (280)
T 3gyb_A 213 N 213 (280)
T ss_dssp C
T ss_pred C
Confidence 3
No 116
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.88 E-value=5.6e-05 Score=79.35 Aligned_cols=137 Identities=10% Similarity=0.011 Sum_probs=95.2
Q ss_pred HHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEeeEeee----ccceeeeecccceeeccEEEEEecCCCCCc
Q 004136 494 LFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTIL----GNRTEYVEFTQPYAESGFSMIVPAKQEEST 569 (771)
Q Consensus 494 l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t----~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~ 569 (771)
+.+.+++. |+++++.-....|....++..|.+|++|+++.+.... .++.....++.++...+..+++++.++
T Consensus 35 l~~~~~~~-G~~v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~s~--- 110 (348)
T 3uif_A 35 FPEELRKQ-GIKVEWVPAAMASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVPKNST--- 110 (348)
T ss_dssp HHHHHHHT-TEEEEEEEECTTCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEETTCC---
T ss_pred HHHHHHhc-CCeEEEEecccCCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEECCCC---
Confidence 55566666 8775443255555577799999999999998655443 445556666666777777788876653
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHH
Q 004136 570 WMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVV 649 (771)
Q Consensus 570 ~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~ 649 (771)
T Consensus 111 -------------------------------------------------------------------------------- 110 (348)
T 3uif_A 111 -------------------------------------------------------------------------------- 110 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEEecChHHHHHHHHh---cCCCCCCcccCCCCHHHHHHHHHcC
Q 004136 650 FILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCVDDSFVKKYLEEV---LGFRSGNIVPFGNTEANYIQKFENN 726 (771)
Q Consensus 650 li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~~~s~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~v~~~ 726 (771)
|++++||. |.+||+..++....++... .+.....+.....+..+.+.+|.+|
T Consensus 111 -----------------------i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G 165 (348)
T 3uif_A 111 -----------------------AKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALASG 165 (348)
T ss_dssp -----------------------CCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHHT
T ss_pred -----------------------CCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHcC
Confidence 89999998 9999998777664433331 3433333333332377999999999
Q ss_pred CceEEEecchhHH
Q 004136 727 TIDSLFLERPYEK 739 (771)
Q Consensus 727 ~~~a~i~~~~~~~ 739 (771)
++||++...+...
T Consensus 166 ~vDa~~~~~~~~~ 178 (348)
T 3uif_A 166 TVDGFFSLFDSYI 178 (348)
T ss_dssp SSSEEEESTTHHH
T ss_pred CCCEEEechHHHH
Confidence 9999998877654
No 117
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.87 E-value=0.0001 Score=74.40 Aligned_cols=207 Identities=10% Similarity=0.029 Sum_probs=119.6
Q ss_pred EEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHHHH
Q 004136 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (771)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~v~ 114 (771)
+||+++|.. .+.......+++.+.++. |+++ .+.++..++....+....++ .+++.++|........ ...
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~-~~~ 71 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ-----RYDL--ALFPILSLARLKRYLENTTL-AYLTDGLILASYDLTE-RFE 71 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG-----TCEE--EECCCCSCCCCC----------CCCSEEEEESCCCC-----
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCchhhHHHHHHHHH-hCCCCEEEEecCCCCH-HHH
Confidence 489999853 344445555666555443 4444 44565555555555566666 6788877653222222 334
Q ss_pred HhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeC-C---CCCCc-chHHHH
Q 004136 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-V---YGGDS-GKLALL 189 (771)
Q Consensus 115 ~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~-~---~g~~~-~~~~~l 189 (771)
..+...++|+|..... .+ + +..+..++...++.+++++...|.++++++.... . ..... ...+.|
T Consensus 72 ~~~~~~~iPvV~~~~~--~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 72 EGRLPTERPVVLVDAQ--NP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp --CCSCSSCEEEESSC--CT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHhhcCCCEEEEecc--CC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 4566789999988754 22 1 3467788888899999999888999999998764 3 22004 567889
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEe
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIV 266 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~ 266 (771)
++.+++.| +.+.....+.... + ..+-...+.++.+. .+++|+ +++...+..+++++++.|+..+ +...++
T Consensus 142 ~~~l~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~--~~~d~~a~g~~~al~~~g~~vP~di~vvg 214 (276)
T 2h0a_A 142 QEALKEAG-RPFSPDRLYITRH---S-QEGGRLALRHFLEKASPPLNVF--AGADQVALGVLEEAVRLGLTPGRDVRVLG 214 (276)
T ss_dssp HHHHHHTT-CCCCGGGEEEECS---S-HHHHHHHHHHHHTTCCSSEEEE--CSSHHHHHHHHHHHHTTSCTTTTSEEEEE
T ss_pred HHHHHHcC-CCCChHHeeecCC---C-hHHHHHHHHHHHhCCCCCCEEE--ECCcHHHHHHHHHHHHcCCCCCCCeEEEE
Confidence 99999988 6543211111111 1 12344455555544 466655 4677778899999999998643 344444
Q ss_pred eC
Q 004136 267 TN 268 (771)
Q Consensus 267 ~~ 268 (771)
.+
T Consensus 215 ~d 216 (276)
T 2h0a_A 215 FD 216 (276)
T ss_dssp ES
T ss_pred eC
Confidence 43
No 118
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.84 E-value=6.9e-05 Score=76.37 Aligned_cols=211 Identities=9% Similarity=0.023 Sum_probs=129.6
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHH---HHHHHHhcCCeEEEEcCCchH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAAT---AAQELINKEKVKVIAGMETWE 108 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~---~~~~li~~~~v~aviGp~~s~ 108 (771)
.+.+||++.|.. .+.......+++.+.++. |+++.+ .++..++....+ ....++ .+++.+||......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~ 78 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAV-----HRHVVV--ATGCGESTPREQALEAVRFLI-GRDCDGVVVISHDL 78 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHT-----TCEEEE--ECCCSSSCHHHHHHHHHHHHH-HTTCSEEEECCSSS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC-----CCEEEE--EeCCCchhhhhhHHHHHHHHH-hcCccEEEEecCCC
Confidence 567899999864 344456666666666553 565544 455555555555 566676 67888777532222
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcchH
Q 004136 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKL 186 (771)
Q Consensus 109 ~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~~ 186 (771)
.. .....+...++|+|..... .+. . .+..+..++...+..+++++...|.++++++..... .. ....
T Consensus 79 ~~-~~~~~l~~~~iPvV~~~~~--~~~---~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~ 147 (290)
T 2rgy_A 79 HD-EDLDELHRMHPKMVFLNRA--FDA---L---PDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDN--VERL 147 (290)
T ss_dssp CH-HHHHHHHHHCSSEEEESSC--CTT---S---GGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHH--HHHH
T ss_pred CH-HHHHHHhhcCCCEEEEccc--cCC---C---CCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccH--HHHH
Confidence 22 2233345579999987654 221 1 123467788888888999998889999999987633 22 4456
Q ss_pred HHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh--CCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeE
Q 004136 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSV 263 (771)
Q Consensus 187 ~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~ 263 (771)
+.|++.+++.| +++.....+.... + ..+-...+.++.+ ..+++|+. ++...+..+++++++.|+..+ +..
T Consensus 148 ~Gf~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~G~~vP~di~ 220 (290)
T 2rgy_A 148 DGFFDELARHG-IARDSVPLIESDF---S-PEGGYAATCQLLESKAPFTGLFC--ANDTMAVSALARFQQLGISVPGDVS 220 (290)
T ss_dssp HHHHHHHHTTT-CCGGGSCEEECCS---S-HHHHHHHHHHHHHHTCCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHHHcC-CCCCcccEEecCC---C-hhHHHHHHHHHHhCCCCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCceE
Confidence 78899999988 6543211111111 1 1223334444433 35787765 667778889999999998643 444
Q ss_pred EEeeCc
Q 004136 264 WIVTNT 269 (771)
Q Consensus 264 ~i~~~~ 269 (771)
.++.+.
T Consensus 221 vvg~D~ 226 (290)
T 2rgy_A 221 VIGYDD 226 (290)
T ss_dssp EEEEEC
T ss_pred EEEeCC
Confidence 554443
No 119
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.83 E-value=0.0011 Score=67.21 Aligned_cols=209 Identities=11% Similarity=0.092 Sum_probs=130.9
Q ss_pred CcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHH
Q 004136 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (771)
Q Consensus 33 ~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~ 112 (771)
..-+||++++.+.++......+++-+.++. |+++.+...+.. .. ..+....++ .+++.+||-.........
T Consensus 11 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~--~~-~~~~~~~l~-~~~vdgiIi~~~~~~~~~ 81 (289)
T 3k9c_A 11 SSRLLGVVFELQQPFHGDLVEQIYAAATRR-----GYDVMLSAVAPS--RA-EKVAVQALM-RERCEAAILLGTRFDTDE 81 (289)
T ss_dssp --CEEEEEEETTCHHHHHHHHHHHHHHHHT-----TCEEEEEEEBTT--BC-HHHHHHHHT-TTTEEEEEEETCCCCHHH
T ss_pred CCCEEEEEEecCCchHHHHHHHHHHHHHHC-----CCEEEEEeCCCC--HH-HHHHHHHHH-hCCCCEEEEECCCCCHHH
Confidence 567899999544555566667776666654 566666554433 22 344556666 789997774322222233
Q ss_pred HHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHH
Q 004136 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (771)
Q Consensus 113 v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~ 192 (771)
+ ..+.. ++|+|..... .+ .. .+-.+..++...++.++++|...|.++|+++....... .....+.|++.
T Consensus 82 ~-~~~~~-~iPvV~i~~~--~~---~~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~-~~~R~~Gf~~a 150 (289)
T 3k9c_A 82 L-GALAD-RVPALVVARA--SG---LP---GVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPG-GADRRAGFLAA 150 (289)
T ss_dssp H-HHHHT-TSCEEEESSC--CS---ST---TSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTT-HHHHHHHHHHH
T ss_pred H-HHHHc-CCCEEEEcCC--CC---CC---CCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCcc-HHHHHHHHHHH
Confidence 3 33445 9999987755 22 12 23457788888899999999888999999998764432 15667889999
Q ss_pred HhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh--CCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEeeCc
Q 004136 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIVTNT 269 (771)
Q Consensus 193 ~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~~~~ 269 (771)
+++.| ..+.... +.... + ..+-...+.++.+ ..+++|+. ++...+..+++++++.|+..+ +...++.+.
T Consensus 151 l~~~g-~~~~~~~-~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~vig~D~ 222 (289)
T 3k9c_A 151 MDRHG-LSASATV-VTGGT---T-ETEGAEGMHTLLEMPTPPTAVVA--FNDRCATGVLDLLVRSGRDVPADISVVGYDD 222 (289)
T ss_dssp HHHTT-CGGGEEE-ECCCS---S-HHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred HHHCC-CCCCccE-EECCC---C-HHHHHHHHHHHHcCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 99998 6532222 22111 1 1333444555544 35777665 677788899999999998644 344444443
No 120
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.82 E-value=0.00029 Score=73.25 Aligned_cols=211 Identities=11% Similarity=0.090 Sum_probs=133.4
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
...+||+++|.. .++......+++.+.++. |+.+.+ .++..++....+....++ .+++.++|........
T Consensus 59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~- 129 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFYAELARGIEDIATMY-----KYNIIL--SNSDQNQDKELHLLNNML-GKQVDGIIFMSGNVTE- 129 (332)
T ss_dssp -CCEEEEEEC--CCSHHHHHHHHHHHHHHHH-----TCEEEE--EECCSHHHHHHHHHHHTS-CCSSCCEEECCSSCCH-
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCEEEE--EeCCCChHHHHHHHHHHH-hCCCcEEEEecCCCCH-
Confidence 567899999854 455567777777777664 555544 456666666666667776 7889877653322222
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeC-C--CCCCcchHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-V--YGGDSGKLAL 188 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~-~--~g~~~~~~~~ 188 (771)
.....+...++|+|..... .+. .. +..+..++...+..++++|...|.+++++|.... . .. ....+.
T Consensus 130 ~~~~~l~~~~iPvV~~~~~--~~~---~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~G 199 (332)
T 2hsg_A 130 EHVEELKKSPVPVVLAASI--EST---NQ---IPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINH--AKKVKG 199 (332)
T ss_dssp HHHHHHTTSSSCEEEESCC--CSC---TT---SCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHH--TTHHHH
T ss_pred HHHHHHHhCCCCEEEEccc--cCC---CC---CCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccH--HHHHHH
Confidence 2334456689999987654 221 12 2346778888888889999888999999998764 2 23 556788
Q ss_pred HHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEE
Q 004136 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWI 265 (771)
Q Consensus 189 l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i 265 (771)
|++.+++.| +.+.....+.... + ..+-...+.++.+. .+++|+. .+...+..+++++++.|+..+ +...+
T Consensus 200 f~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~disvv 272 (332)
T 2hsg_A 200 YKRALTESG-LPVRDSYIVEGDY---T-YDSGIEAVEKLLEEDEKPTAIFV--GTDEMALGVIHGAQDRGLNVPNDLEII 272 (332)
T ss_dssp HHHHHHTTT-CCCCGGGEEECCS---S-HHHHHHHHHHHHHSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCHHHHCEEE
T ss_pred HHHHHHHcC-CCCChheEEeCCC---C-HHHHHHHHHHHHcCCCCCeEEEE--CChHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 999999999 6543211111111 1 12233445555443 5777665 677778889999999998532 34445
Q ss_pred eeCc
Q 004136 266 VTNT 269 (771)
Q Consensus 266 ~~~~ 269 (771)
+.+.
T Consensus 273 g~D~ 276 (332)
T 2hsg_A 273 GFDN 276 (332)
T ss_dssp EESC
T ss_pred EECC
Confidence 4444
No 121
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.82 E-value=0.00013 Score=76.01 Aligned_cols=205 Identities=12% Similarity=0.092 Sum_probs=130.4
Q ss_pred CCcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhH
Q 004136 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (771)
Q Consensus 32 ~~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~ 110 (771)
....+||+++|.. .+.......+++.+.++. |+.+. +.++..++....+....++ .+++.+|| .......
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiI-~~~~~~~ 128 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNK-----GYTLF--LCNTDDDKEKEKTYLEVLQ-SHRVAGII-ASRSQCE 128 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHH-HTTCSEEE-EETCCCS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCChHHHHHHHHHHH-hCCCCEEE-ECCCCCH
Confidence 3567899999864 344456666666666653 55554 4566677877777777787 68899888 4322211
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcchHHH
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLAL 188 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~ 188 (771)
..+...++|+|..... .+. ..+ .+..++...+..++++|...|.++|++|..... .. ....+.
T Consensus 129 ----~~l~~~~iPvV~~~~~--~~~----~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~G 193 (330)
T 3ctp_A 129 ----DEYANIDIPVVAFENH--ILD----NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEAT--ELRYKG 193 (330)
T ss_dssp ----GGGTTCCSCEEEESSC--CCT----TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHH--HHHHHH
T ss_pred ----HHHHhcCCCEEEEecc--CCC----CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccH--HHHHHH
Confidence 3355789999987755 221 222 466777788888899998889999999987643 23 455788
Q ss_pred HHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh-CCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEe
Q 004136 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIV 266 (771)
Q Consensus 189 l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~ 266 (771)
|++.+++.| +.+. ...+....+. .+-...+.++.+ .++++|+. ++...+..+++++++.|+..+ +...++
T Consensus 194 f~~al~~~g-~~~~-~~~~~~~~~~----~~~~~~~~~ll~~~~~~ai~~--~~d~~A~g~~~al~~~G~~vP~disvvg 265 (330)
T 3ctp_A 194 FLDGARAKD-LEID-FIEFQHDFQV----KMLEEDINSMKDIVNYDGIFV--FNDIAAATVMRALKKRGVSIPQEVQIIG 265 (330)
T ss_dssp HHHHHHHTT-CCCE-EEECSSSCCG----GGGGCCCTTGGGGGGSSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHcC-CCcc-eeEEcCCCCH----HHHHHHHHHHhcCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCCeEEEE
Confidence 999999999 7655 3222211110 111122233333 35788776 566678889999999998643 344444
Q ss_pred eC
Q 004136 267 TN 268 (771)
Q Consensus 267 ~~ 268 (771)
.+
T Consensus 266 ~D 267 (330)
T 3ctp_A 266 FD 267 (330)
T ss_dssp SB
T ss_pred EC
Confidence 33
No 122
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.81 E-value=0.00039 Score=71.20 Aligned_cols=211 Identities=15% Similarity=0.149 Sum_probs=133.2
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
..-+||+++|.. .+.......+++-+.++. |+.+. +.++..++....+....++ .+++.+||-........
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~~ 85 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGH-----STDVL--LGQIDAPPRGTQQLSRLVS-EGRVDGVLLQRREDFDD 85 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHT-----TCCEE--EEECCSTTHHHHHHHHHHH-SCSSSEEEECCCTTCCH
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCChHHHHHHHHHHH-hCCCcEEEEecCCCCcH
Confidence 557799999865 455667777777777664 45554 4555666766666677776 78898776433322222
Q ss_pred -HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHH
Q 004136 112 -VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (771)
Q Consensus 112 -~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (771)
.+..+ .. ++|+|..... .+. ..+ .+..++...++.++++|...|.++++++.............+.|+
T Consensus 86 ~~~~~l-~~-~iPvV~i~~~--~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 154 (303)
T 3kke_A 86 DMLAAV-LE-GVPAVTINSR--VPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYL 154 (303)
T ss_dssp HHHHHH-HT-TSCEEEESCC--CTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHH
T ss_pred HHHHHH-hC-CCCEEEECCc--CCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHH
Confidence 34344 44 9999988765 332 223 467788888889999998889999999986543210045578899
Q ss_pred HHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHh-----hh--CCceEEEEEecChhHHHHHHHHHHHcCCCCC-Ce
Q 004136 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKV-----QD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DS 262 (771)
Q Consensus 191 ~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l-----~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~ 262 (771)
+.+++.| +.+.......... + ...-...+.++ .+ ..+++|+. ++...+..+++++++.|+..+ +.
T Consensus 155 ~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~di 227 (303)
T 3kke_A 155 ETLASAG-LRSEAAWVVDAGW---E-ADAGSAALNTLYRGANLGKPDGPTAVVV--ASVNAAVGALSTALRLGLRVPEDL 227 (303)
T ss_dssp HHHHHTT-CCCCGGGEEECCS---S-HHHHHHHHHHHHHHHCTTSTTSCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHcC-CCCCcceEEecCC---C-hHHHHHHHHHhcchhhhcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCce
Confidence 9999998 6543211111111 1 12334445555 43 25777665 677778899999999998643 44
Q ss_pred EEEeeCc
Q 004136 263 VWIVTNT 269 (771)
Q Consensus 263 ~~i~~~~ 269 (771)
..++.+.
T Consensus 228 ~vig~D~ 234 (303)
T 3kke_A 228 SIVGINT 234 (303)
T ss_dssp EEEEESC
T ss_pred EEEEEcC
Confidence 4555443
No 123
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.81 E-value=0.00052 Score=69.95 Aligned_cols=213 Identities=8% Similarity=0.074 Sum_probs=130.2
Q ss_pred CCcEEEEEEEeCC------CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 004136 32 EEVTKIGAIVDAN------SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME 105 (771)
Q Consensus 32 ~~~I~IG~i~p~s------~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~ 105 (771)
..+-+||+++|.. .++......+++.+.++. |+.+ .+.++..++....+....+. .+++.+||-..
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdGiI~~~ 76 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH-----GYGT--QTTVSNNMNDLMDEVYKMIK-QRMVDAFILLY 76 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT-----TCEE--EECCCCSHHHHHHHHHHHHH-TTCCSEEEESC
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHC-----CCEE--EEEcCCCChHHHHHHHHHHH-hCCcCEEEEcC
Confidence 3567899999643 233344555555444432 5554 45566656665555556665 78888776432
Q ss_pred chHhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcch
Q 004136 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (771)
Q Consensus 106 ~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (771)
.... ......+...++|+|..... .+... . .+..+..++...++.++++|...|.++++++............
T Consensus 77 ~~~~-~~~~~~l~~~~iPvV~i~~~--~~~~~-~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 149 (295)
T 3hcw_A 77 SKEN-DPIKQMLIDESMPFIVIGKP--TSDID-H---QFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDR 149 (295)
T ss_dssp CCTT-CHHHHHHHHTTCCEEEESCC--CSSGG-G---GSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHH
T ss_pred cccC-hHHHHHHHhCCCCEEEECCC--Ccccc-C---CceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHH
Confidence 2211 23444566779999987755 22110 0 2234667888888899999988899999999876442100456
Q ss_pred HHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC-----CceEEEEEecChhHHHHHHHHHHHcCCCCC
Q 004136 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-----QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (771)
Q Consensus 186 ~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-----~~~vIv~~~~~~~~~~~il~~a~~~g~~~~ 260 (771)
.+.|++.+++.| +.+.... .. .. ..+....+.++.+. .+++|+. ++...+..++++++++|+..+
T Consensus 150 ~~Gf~~al~~~g-~~~~~~~-~~-~~-----~~~~~~~~~~~l~~~~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP 219 (295)
T 3hcw_A 150 IQGFETVASQFN-LDYQIIE-TS-NE-----REVILNYMQNLHTRLKDPNIKQAIIS--LDAMLHLAILSVLYELNIEIP 219 (295)
T ss_dssp HHHHHHHHHHTT-CEEEEEE-EC-SC-----HHHHHHHHHHHHHHHTCTTSCEEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHcC-CCeeEEe-cc-CC-----HHHHHHHHHHHHhhcccCCCCcEEEE--CChHHHHHHHHHHHHcCCCCC
Confidence 788999999999 7765211 11 11 12233334433322 5777654 777778999999999998644
Q ss_pred -CeEEEeeCc
Q 004136 261 -DSVWIVTNT 269 (771)
Q Consensus 261 -~~~~i~~~~ 269 (771)
+...++.+.
T Consensus 220 ~di~vig~D~ 229 (295)
T 3hcw_A 220 KDVMTATFND 229 (295)
T ss_dssp TTEEEEEECC
T ss_pred CceEEEEeCC
Confidence 455555444
No 124
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.79 E-value=0.0024 Score=64.70 Aligned_cols=214 Identities=8% Similarity=-0.008 Sum_probs=129.0
Q ss_pred EEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEec--CCCCHHHHHHHHHHHHhcCCeEEEEc-CCchHhHH
Q 004136 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRD--HNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (771)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D--~~~~~~~a~~~~~~li~~~~v~aviG-p~~s~~~~ 111 (771)
+||++.|.. .++......+++.+.++. |+.+.+ .+ +..++..-.+....++ .++|.++|- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~vdgiIi~~~~~~~~~ 74 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL-----GVSVDI--FASPSEGDFQSQLQLFEDLS-NKNYKGIAFAPLSSVNLV 74 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCCEEE--EECSSTTCHHHHHHHHHHHH-TSSEEEEEECCSSSSTTH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc-----CCEEEE--eCCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChHHHH
Confidence 699999864 444455666666666654 455544 44 6667777777777777 788997663 43332222
Q ss_pred HHHHhhccCCccEEeecCCCCCCCcc-C-CCCceEEEeecCcHHHHHHHHHHHHHc-C--CeEEEEEEEeCCCCCCcchH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSM-S-RRWPYLIRMASNDSEQMKCIADLARKY-N--WRRVAAIYEDNVYGGDSGKL 186 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~-~-~~~p~~fr~~p~~~~~~~a~~~~l~~~-~--w~~v~ii~~~~~~g~~~~~~ 186 (771)
.....+...++|+|..... .+... . ...+..-.+..++...++.++++|... | -+++++|.............
T Consensus 75 ~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~ 152 (288)
T 1gud_A 75 MPVARAWKKGIYLVNLDEK--IDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARR 152 (288)
T ss_dssp HHHHHHHHTTCEEEEESSC--CCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHH
T ss_pred HHHHHHHHCCCeEEEECCC--CCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHH
Confidence 2233445579999987654 22110 0 000110346778888888888988666 7 89999998654321003456
Q ss_pred HHHHHHHhcc-CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCCCeE
Q 004136 187 ALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (771)
Q Consensus 187 ~~l~~~~~~~-g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~ 263 (771)
+.|++.+++. | +++..... .... ...-...++++.+. .+++|+. .+...+..++++++++|+. .+..
T Consensus 153 ~Gf~~al~~~~g-~~~~~~~~-~~~~-----~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~-~dv~ 222 (288)
T 1gud_A 153 NGATEAFKKASQ-IKLVASQP-ADWD-----RIKALDVATNVLQRNPNIKAIYC--ANDTMAMGVAQAVANAGKT-GKVL 222 (288)
T ss_dssp HHHHHHHHTCTT-EEEEEEEE-CTTC-----HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHTTCT-TTSE
T ss_pred HHHHHHHHhCCC-cEEEEeec-CCcc-----HHHHHHHHHHHHHhCCCceEEEE--CCCchHHHHHHHHHhcCCC-CCeE
Confidence 7788999887 8 76544221 1111 12233344444332 4677665 6777788999999999985 4455
Q ss_pred EEeeCc
Q 004136 264 WIVTNT 269 (771)
Q Consensus 264 ~i~~~~ 269 (771)
.++.+.
T Consensus 223 vvGfD~ 228 (288)
T 1gud_A 223 VVGTDG 228 (288)
T ss_dssp EEEESC
T ss_pred EEEeCC
Confidence 665554
No 125
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.79 E-value=0.00074 Score=70.44 Aligned_cols=212 Identities=12% Similarity=0.098 Sum_probs=132.1
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
...+||+++|.. .+.......+++.+.++. |+++.+ .++..++....+....++ .+++.+||-.......
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~- 127 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK-----GYTLIL--GNAWNNLEKQRAYLSMMA-QKRVDGLLVMCSEYPE- 127 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHT-----TCEEEE--EECTTCHHHHHHHHHHHH-HTTCSEEEECCSCCCH-
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHH-cCCCCEEEEeCCCCCh-
Confidence 457899999864 444455666666666553 555544 566677777777777777 7888877742221111
Q ss_pred HHHHhh-ccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcchHHH
Q 004136 112 VVAEIA-SRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLAL 188 (771)
Q Consensus 112 ~v~~~~-~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~ 188 (771)
.....+ +..++|+|..... .+. . +....+..++...+..++++|...|.+++++|..... .. ....+.
T Consensus 128 ~~~~~l~~~~~iPvV~~~~~--~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~--~~R~~G 198 (340)
T 1qpz_A 128 PLLAMLEEYRHIPMVVMDWG--EAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTG--AGRLAG 198 (340)
T ss_dssp HHHHHHHTTTTSCEEEEEES--SCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHH--HHHHHH
T ss_pred HHHHHHHhhCCCCEEEEecc--cCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccH--HHHHHH
Confidence 122223 3369999987654 221 1 2223577788888888899987789999999986533 23 445778
Q ss_pred HHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh--CCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEE
Q 004136 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWI 265 (771)
Q Consensus 189 l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i 265 (771)
|++.+++.| +.+.....+.... + ..+-...+.++.+ ..+++|+. .+...+..+++++++.|+..+ +...+
T Consensus 199 f~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~disvi 271 (340)
T 1qpz_A 199 FMKAMEEAM-IKVPESWIVQGDF---E-PESGYRAMQQILSQPHRPTAVFC--GGDIMAMGALCAADEMGLRVPQDVSLI 271 (340)
T ss_dssp HHHHHHHTT-CCCCGGGBCCCCS---S-HHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHCC-CCCChhheEeCCC---C-HHHHHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 999999988 6543221221111 1 1233344555544 35777766 666778889999999998643 44455
Q ss_pred eeCc
Q 004136 266 VTNT 269 (771)
Q Consensus 266 ~~~~ 269 (771)
+.+.
T Consensus 272 g~D~ 275 (340)
T 1qpz_A 272 GYDN 275 (340)
T ss_dssp EEEC
T ss_pred eECC
Confidence 5443
No 126
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.77 E-value=0.00024 Score=72.55 Aligned_cols=210 Identities=9% Similarity=0.079 Sum_probs=134.4
Q ss_pred EEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-CCchH---h
Q 004136 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWE---E 109 (771)
Q Consensus 35 I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~s~---~ 109 (771)
-+||+++|.. .+.......+++.+.++. |+.+ .+.++..++....+....++ .+++.+||- |..+. .
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~ 87 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ-----GYSM--LLTSTNNNPDNERRGLENLL-SQHIDGLIVEPTKSALQTP 87 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT-----TCEE--EEEECTTCHHHHHHHHHHHH-HTCCSEEEECCSSTTSCCT
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCChHHHHHHHHHHH-HCCCCEEEEecccccccCC
Confidence 6899999976 445566777777776663 4554 44566678888888888888 788887664 33221 3
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC-CCCCcchHHH
Q 004136 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLAL 188 (771)
Q Consensus 110 ~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~ 188 (771)
.......+...++|+|..... .+. .. +..+..+....++.++++|...|.++++++..... .. ....+.
T Consensus 88 ~~~~~~~~~~~~iPvV~~~~~--~~~---~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~--~~R~~g 157 (298)
T 3tb6_A 88 NIGYYLNLEKNGIPFAMINAS--YAE---LA---APSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQG--VKRMNG 157 (298)
T ss_dssp THHHHHHHHHTTCCEEEESSC--CTT---CS---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHH--HHHHHH
T ss_pred cHHHHHHHHhcCCCEEEEecC--cCC---CC---CCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccH--HHHHHH
Confidence 334455566789999988755 222 12 22467788888999999998889999999987544 22 456788
Q ss_pred HHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--C--ceEEEEEecChhHHHHHHHHHHHcCCCCC-CeE
Q 004136 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--Q--SRVFIVLQASLDMTIHLFTEANRMGLVGK-DSV 263 (771)
Q Consensus 189 l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~--~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~ 263 (771)
|++.+++.| +.+........... +........+.++.+. + +++|+. ++...+..+++++++.|+..+ +..
T Consensus 158 f~~~l~~~g-~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~ 232 (298)
T 3tb6_A 158 FIQAHRERE-LFPSPDMIVTFTTE--EKESKLLEKVKATLEKNSKHMPTAILC--YNDEIALKVIDMLREMDLKVPEDMS 232 (298)
T ss_dssp HHHHHHHTT-CCCCGGGEEEECHH--HHTTHHHHHHHHHHHHTTTSCCSEEEC--SSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHcC-CCCCcceEEEeccc--chhhhHHHHHHHHHhcCCCCCCeEEEE--eCcHHHHHHHHHHHHcCCCCCCceE
Confidence 999999988 65432111111110 0001113334443332 3 677654 677778899999999998643 344
Q ss_pred EEee
Q 004136 264 WIVT 267 (771)
Q Consensus 264 ~i~~ 267 (771)
.++.
T Consensus 233 vvg~ 236 (298)
T 3tb6_A 233 IVGY 236 (298)
T ss_dssp EECS
T ss_pred EEec
Confidence 4433
No 127
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.77 E-value=0.00062 Score=68.58 Aligned_cols=210 Identities=11% Similarity=0.067 Sum_probs=130.9
Q ss_pred CCcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhH
Q 004136 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (771)
Q Consensus 32 ~~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~ 110 (771)
+..-+||+++|.. .+.......+++.+.++. |+.+ .+.++..++....+....++ .+++.+||-.....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~-- 74 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESR-----GYIG--VLFDANADIEREKTLLRAIG-SRGFDGLILQSFSN-- 74 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT-----TCEE--EEEECTTCHHHHHHHHHHHH-TTTCSEEEEESSCC--
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCCHHHHHHHHHHHH-hCCCCEEEEecCCc--
Confidence 4567899999875 334445555665555543 4554 44566667777777777777 78888766433333
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC-CCCCcchHHHH
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALL 189 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~l 189 (771)
......+...++|+|..... .+ ... +-.+..++...++.+++++...|.++++++..... ........+.|
T Consensus 75 ~~~~~~l~~~~iPvV~i~~~--~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 PQTVQEILHQQMPVVSVDRE--MD---ACP---WPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp HHHHHHHHTTSSCEEEESCC--CT---TCS---SCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEecc--cC---CCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 44555667789999988754 22 122 23467788889999999998899999999998754 21002345666
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh-CCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEee
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIVT 267 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~~ 267 (771)
++.+++.+ . + .+.... . .....+....+.+.. ..+++|+. ++...+..++++++++|+..+ +...++.
T Consensus 147 ~~~l~~~~-~-~----~~~~~~-~-~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vig~ 216 (276)
T 3jy6_A 147 LAAAQDVD-V-L----EVSESS-Y-NHSEVHQRLTQLITQNDQKTVAFA--LKERWLLEFFPNLIISGLIDNQTVTATGF 216 (276)
T ss_dssp HTTCSEEE-E-E----EECSSS-C-CHHHHHHHHHHHHHSSSSCEEEEE--SSHHHHHHHSHHHHHSSSCCSSSEEEEEB
T ss_pred HHHHHhCC-c-E----EEeccc-c-CCcHHHHHHHHHHhcCCCCcEEEE--eCcHHHHHHHHHHHHcCCCCCCcEEEEEE
Confidence 66666665 3 1 122111 0 111234444444433 35777655 777888899999999998754 4445544
Q ss_pred Cc
Q 004136 268 NT 269 (771)
Q Consensus 268 ~~ 269 (771)
+.
T Consensus 217 d~ 218 (276)
T 3jy6_A 217 AD 218 (276)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 128
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.76 E-value=0.0004 Score=70.57 Aligned_cols=213 Identities=8% Similarity=0.029 Sum_probs=127.6
Q ss_pred CCcEEEEEEEeCCC---cCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchH
Q 004136 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (771)
Q Consensus 32 ~~~I~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~ 108 (771)
..+-+||+++|... ++......+++.+.++ . |+.+.+. ++..++.... ...+++.++++.+||-.....
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~---~--g~~~~~~--~~~~~~~~~~-~~~~~l~~~~vdgiIi~~~~~ 77 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLST---T--QYHLVVT--PHIHAKDSMV-PIRYILETGSADGVIISKIEP 77 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT---S--SCEEEEC--CBSSGGGTTH-HHHHHHHHTCCSEEEEESCCT
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHH---c--CCEEEEe--cCCcchhHHH-HHHHHHHcCCccEEEEecCCC
Confidence 35678999999753 3334444555544433 2 5655544 4433333322 233434367787665322211
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHH
Q 004136 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (771)
Q Consensus 109 ~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (771)
. ......+...++|+|..... .+ ... +-.+..++...++.+++++...|.++++++.............+.
T Consensus 78 ~-~~~~~~l~~~~iPvV~i~~~--~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~g 148 (288)
T 3gv0_A 78 N-DPRVRFMTERNMPFVTHGRS--DM---GIE---HAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKG 148 (288)
T ss_dssp T-CHHHHHHHHTTCCEEEESCC--CS---SCC---CEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHH
T ss_pred C-cHHHHHHhhCCCCEEEECCc--CC---CCC---CcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHH
Confidence 1 13344556689999987754 22 122 234678888889999999988899999999876442100456788
Q ss_pred HHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEE
Q 004136 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWI 265 (771)
Q Consensus 189 l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i 265 (771)
+++.+++.| +.+.....+.... + ..+....+.++.+. .+++|+. ++...+..++++++++|+..+ +...+
T Consensus 149 f~~~l~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~vi 221 (288)
T 3gv0_A 149 FNRGIRDFG-LTEFPIDAVTIET---P-LEKIRDFGQRLMQSSDRPDGIVS--ISGSSTIALVAGFEAAGVKIGEDVDIV 221 (288)
T ss_dssp HHHHHHHTT-CEECCCCSCCTTS---C-HHHHHHHHHHHTTSSSCCSEEEE--SCHHHHHHHHHHHHTTTCCTTTSCEEE
T ss_pred HHHHHHHcC-CCcchhheecccc---c-hHHHHHHHHHHHhCCCCCcEEEE--cCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999999 7654332222111 1 13344556666544 4677665 677778889999999998643 34444
Q ss_pred eeC
Q 004136 266 VTN 268 (771)
Q Consensus 266 ~~~ 268 (771)
+.+
T Consensus 222 g~d 224 (288)
T 3gv0_A 222 SKQ 224 (288)
T ss_dssp EEE
T ss_pred Eec
Confidence 443
No 129
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.73 E-value=0.00042 Score=70.64 Aligned_cols=212 Identities=10% Similarity=0.051 Sum_probs=128.5
Q ss_pred CcEEEEEEEeC-----CCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCch
Q 004136 33 EVTKIGAIVDA-----NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (771)
Q Consensus 33 ~~I~IG~i~p~-----s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s 107 (771)
.+-+||+++|. +.++......+++.+.++. |+.+.+...+.. .... ...+++..+++.+||-....
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~---~~~~-~~~~~l~~~~vdGiIi~~~~ 75 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR-----GLDLLLIPDEPG---EKYQ-SLIHLVETRRVDALIVAHTQ 75 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT-----TCEEEEEEECTT---CCCH-HHHHHHHHTCCSEEEECSCC
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHC-----CCEEEEEeCCCh---hhHH-HHHHHHHcCCCCEEEEeCCC
Confidence 55789999994 2334455566666555553 677776655431 1122 23333336788866642222
Q ss_pred HhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHH
Q 004136 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (771)
Q Consensus 108 ~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 187 (771)
... .....+...++|+|..... .+ . +.+-.+..++...+..++++|...|.++++++.............+
T Consensus 76 ~~~-~~~~~l~~~~iPvV~~~~~--~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 146 (294)
T 3qk7_A 76 PED-FRLQYLQKQNFPFLALGRS--HL---P---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQ 146 (294)
T ss_dssp SSC-HHHHHHHHTTCCEEEESCC--CC---S---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHH
T ss_pred CCh-HHHHHHHhCCCCEEEECCC--CC---C---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHH
Confidence 111 3344566779999987754 11 1 2233577888888999999998889999999987654210045578
Q ss_pred HHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEE
Q 004136 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVW 264 (771)
Q Consensus 188 ~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~ 264 (771)
.|++.+++.| +.+.......... + ..+-...+.++.+. .+++|+. ++...+..++++++++|+..+ +...
T Consensus 147 Gf~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~di~v 219 (294)
T 3qk7_A 147 GYVQTMSEAG-LMPLAGYLQKADP---T-RPGGYLAASRLLALEVPPTAIIT--DCNMLGDGVASALDKAGLLGGEGISL 219 (294)
T ss_dssp HHHHHHHTTT-CCCCTTCEEEECS---S-HHHHHHHHHHHHHSSSCCSEEEE--SSHHHHHHHHHHHHHTTCSSTTSCEE
T ss_pred HHHHHHHHCC-CCCChhHeecCCC---C-HHHHHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 8999999998 6542211111111 1 12333444444433 5777665 777888899999999998744 4555
Q ss_pred EeeCc
Q 004136 265 IVTNT 269 (771)
Q Consensus 265 i~~~~ 269 (771)
++.+.
T Consensus 220 ig~D~ 224 (294)
T 3qk7_A 220 IAYDG 224 (294)
T ss_dssp EEETC
T ss_pred EeecC
Confidence 55444
No 130
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.72 E-value=0.002 Score=64.57 Aligned_cols=208 Identities=10% Similarity=0.099 Sum_probs=126.5
Q ss_pred EEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-CCchHhHHHH
Q 004136 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (771)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~s~~~~~v 113 (771)
+||++.|.. .++......+++.+.++. |+++. +.++..++..-.+....++ .+++.++|- |.........
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~~ 74 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL-----GYNLV--VLDSQNNPAKELANVQDLT-VRGTKILLINPTDSDAVGNA 74 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCEEE--EEECTTCHHHHHHHHHHHT-TTTEEEEEECCSSTTTTHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc-----CcEEE--EeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChHHHHHH
Confidence 589998864 344455666666666654 45554 4566667776666677777 788997663 3333322233
Q ss_pred HHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHc--CCeEEEEEEEeCCCCCCcchHHHHHH
Q 004136 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAE 191 (771)
Q Consensus 114 ~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (771)
...+...++|+|..... .+. .. ....+..++...++.++++|... +-++++++.............+.|++
T Consensus 75 ~~~~~~~~iPvV~i~~~--~~~---~~--~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 75 VKMANQANIPVITLDRQ--ATK---GE--VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHTTCCEEEESSC--CSS---SC--CSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEecCC--CCC---Cc--eeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 34456679999987654 221 11 12246677778888888888665 56899999865332100345677889
Q ss_pred HHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh--CCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeCc
Q 004136 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (771)
Q Consensus 192 ~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (771)
.+++.| +++.... ..... ...-...++++.+ ..+++|+. ++...+..++++++++|+ .+...++.+.
T Consensus 148 al~~~g-~~~~~~~-~~~~~-----~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~g~--~dv~vvGfD~ 216 (271)
T 2dri_A 148 AVAAHK-FNVLASQ-PADFD-----RIKGLNVMQNLLTAHPDVQAVFA--QNDEMALGALRALQTAGK--SDVMVVGFDG 216 (271)
T ss_dssp HHHHHT-CEEEEEE-ECTTC-----HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHHTC--CSCEEEEEEC
T ss_pred HHhcCC-CEEEEec-CCCCC-----HHHHHHHHHHHHHhCCCccEEEE--CCCcHHHHHHHHHHHcCC--CCcEEEEecC
Confidence 999989 7764322 11111 1222333444433 24677655 777788999999999998 3445554443
No 131
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.72 E-value=0.00099 Score=66.15 Aligned_cols=200 Identities=11% Similarity=0.030 Sum_probs=128.0
Q ss_pred EEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHHH
Q 004136 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (771)
Q Consensus 35 I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~v 113 (771)
-+||+++|.. .+.......+++.+.++. |+.+. +.++..++....+....++ .+++.++|-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~~-- 72 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQ-----GYDPI--MMESQFSPQLVAEHLGVLK-RRNIDGVVLFGFTGITE-- 72 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHH-----TCEEE--EEECTTCHHHHHHHHHHHH-TTTCCEEEEECCTTCCT--
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHc-----CCEEE--EEeCCCcHHHHHHHHHHHH-hcCCCEEEEecCccccH--
Confidence 3699999864 344456666776666654 45554 4456667776666677776 77888766422211111
Q ss_pred HHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEe--C-CCCCCcchHHHHH
Q 004136 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED--N-VYGGDSGKLALLA 190 (771)
Q Consensus 114 ~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~--~-~~g~~~~~~~~l~ 190 (771)
..+...++|+|..... . +.+-.+..++...++.+++++...|.++++++... + ... ....+.|+
T Consensus 73 -~~l~~~~~pvV~~~~~--~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~gf~ 139 (255)
T 1byk_A 73 -EMLAHWQSSLVLLARD--A--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTG--KRRHEAYL 139 (255)
T ss_dssp -TTSGGGSSSEEEESSC--C--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTT--HHHHHHHH
T ss_pred -HHHHhcCCCEEEEccc--c--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccH--HHHHHHHH
Confidence 2345568999887643 1 12345777888888889999988899999999864 2 233 55678899
Q ss_pred HHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCCeEEEeeCc
Q 004136 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (771)
Q Consensus 191 ~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (771)
+.+++.| +.+.. +.... + ..+-...+.++.+.++++|+. ++...+..+++++++.|+ ++...++.+.
T Consensus 140 ~al~~~g-~~~~~---~~~~~---~-~~~~~~~~~~~l~~~~~ai~~--~~d~~A~g~~~al~~~g~--~di~vig~d~ 206 (255)
T 1byk_A 140 AFCKAHK-LHPVA---ALPGL---A-MKQGYENVAKVITPETTALLC--ATDTLALGASKYLQEQRI--DTLQLASVGN 206 (255)
T ss_dssp HHHHHTT-CCCEE---ECCCS---C-HHHHHHHSGGGCCTTCCEEEE--SSHHHHHHHHHHHHHTTC--CSCEEEEECC
T ss_pred HHHHHcC-CCcce---eecCC---c-cchHHHHHHHHhcCCCCEEEE--eChHHHHHHHHHHHHcCC--CcEEEEEeCC
Confidence 9999998 65431 11111 1 122334445554456887665 677778899999999998 4455555444
No 132
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.71 E-value=0.00078 Score=67.85 Aligned_cols=204 Identities=10% Similarity=0.053 Sum_probs=122.5
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
..-+||+++|.. .+.......+++.+.++. |+.+. +.++..++....+....++ .+++.+||-...+ .
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~~dgiIi~~~~--~- 75 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH-----GYQVL--IGNSDNDIKKAQGYLATFV-SHNCTGMISTAFN--E- 75 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCCEE--EEECTTCHHHHHHHHHHHH-HTTCSEEEECGGG--H-
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCCHHHHHHHHHHHH-hCCCCEEEEecCC--h-
Confidence 557799999874 344456666666666554 45544 4566667777777777777 6788877653322 2
Q ss_pred HHHH-hhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHH
Q 004136 112 VVAE-IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (771)
Q Consensus 112 ~v~~-~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (771)
.... .+...++|+|..... .+.. . .+..++...++.+++++...|.++++++.............+.|+
T Consensus 76 ~~~~~~l~~~~iPvV~~~~~--~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 145 (277)
T 3e61_A 76 NIIENTLTDHHIPFVFIDRI--NNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIK 145 (277)
T ss_dssp HHHHHHHHHC-CCEEEGGGC--C-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEecc--CCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 2234 566779999988765 2211 1 677888888999999998889999999986543210145678899
Q ss_pred HHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEeeC
Q 004136 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIVTN 268 (771)
Q Consensus 191 ~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~~~ 268 (771)
+.+++.| +.+.. ....... . .+....+.+ ...+++|+. .+...+..++++++++|+..+ +...++.+
T Consensus 146 ~~l~~~~-~~~~~-~~~~~~~----~-~~~~~~l~~--~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vig~d 213 (277)
T 3e61_A 146 YILDQQR-IDYKM-LEATLLD----N-DKKFIDLIK--ELSIDSIIC--SNDLLAINVLGIVQRYHFKVPAEIQIIGYD 213 (277)
T ss_dssp HHHHC----CEEE-EEGGGGG----S-HHHHHHHHH--HHTCCEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred HHHHHcC-CCccc-eecCCCC----H-HHHHHHhhc--CCCCCEEEE--CCcHHHHHHHHHHHHcCCCCCCceEEEeeC
Confidence 9999998 76654 2211111 0 122222221 236787766 677788899999999998643 34444443
No 133
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.68 E-value=0.00059 Score=69.94 Aligned_cols=208 Identities=11% Similarity=0.110 Sum_probs=131.3
Q ss_pred CcEEEEEEEeC------CCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-CC
Q 004136 33 EVTKIGAIVDA------NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-ME 105 (771)
Q Consensus 33 ~~I~IG~i~p~------s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~ 105 (771)
..-+||+++|. +.+.......+++.+.++. |+.+ .+.++..++....+....+. .+++.+||- |.
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~ 92 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR-----GYST--RMTVSENSGDLYHEVKTMIQ-SKSVDGFILLYS 92 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH-----TCEE--EECCCSSHHHHHHHHHHHHH-TTCCSEEEESSC
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCChHHHHHHHHHHH-hCCCCEEEEeCC
Confidence 56789999997 2344456666776666664 4544 44566656665555556665 788887664 32
Q ss_pred chHhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcch
Q 004136 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (771)
Q Consensus 106 ~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~ 185 (771)
... ......+...++|+|..... . .... +..+..++...+..++++|...|.++|+++............
T Consensus 93 ~~~--~~~~~~l~~~~iPvV~i~~~--~---~~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 162 (305)
T 3huu_A 93 LKD--DPIEHLLNEFKVPYLIVGKS--L---NYEN---IIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDR 162 (305)
T ss_dssp BTT--CHHHHHHHHTTCCEEEESCC--C---SSTT---CCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHH
T ss_pred cCC--cHHHHHHHHcCCCEEEECCC--C---cccC---CcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHH
Confidence 222 13444566779999987755 2 1222 334778888888999999988899999999876542100445
Q ss_pred HHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHh-hh--CCceEEEEEecChhHHHHHHHHHHHcCCCCC-C
Q 004136 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKV-QD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-D 261 (771)
Q Consensus 186 ~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l-~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~ 261 (771)
.+.|++.+++.| +.+.. . +.... +.-...+.++ .+ ..+++|+. ++...+..+++++++.|+..+ +
T Consensus 163 ~~Gf~~~l~~~g-~~~~~-~-~~~~~------~~~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~g~~vP~d 231 (305)
T 3huu_A 163 SVGFKQYCDDVK-ISNDC-V-VIKSM------NDLRDFIKQYCIDASHMPSVIIT--SDVMLNMQLLNVLYEYQLRIPED 231 (305)
T ss_dssp HHHHHHHHHHTT-CCCCE-E-EECSH------HHHHHHC--------CCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTT
T ss_pred HHHHHHHHHHcC-CCccc-E-EecCc------HHHHHHHHHhhhcCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCCcc
Confidence 788999999998 65543 1 11111 1123334444 32 36777665 777788889999999998643 4
Q ss_pred eEEEeeCc
Q 004136 262 SVWIVTNT 269 (771)
Q Consensus 262 ~~~i~~~~ 269 (771)
...++.+.
T Consensus 232 i~vig~D~ 239 (305)
T 3huu_A 232 IQTATFNT 239 (305)
T ss_dssp CEEEEESC
T ss_pred eEEEEECC
Confidence 55555444
No 134
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.65 E-value=0.0011 Score=69.27 Aligned_cols=211 Identities=9% Similarity=0.040 Sum_probs=133.2
Q ss_pred CCcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhH
Q 004136 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (771)
Q Consensus 32 ~~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~ 110 (771)
...-+||+++|.. .++......+++.+.++. |+.+ .+.++..++..-.+....++ .+++.+||-......
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~i~~l~-~~~vdGiIi~~~~~~- 136 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLEDT-----ELQP--VVGVTDYLPEKEEKVLYEML-SWRPSGVIIAGLEHS- 136 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTSS-----SSEE--EEEECTTCHHHHHHHHHHHH-TTCCSEEEEECSCCC-
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCCHHHHHHHHHHHH-hCCCCEEEEECCCCC-
Confidence 3467899999875 344455556665554442 5655 45566678887777777887 678886663222111
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeC--C-CCCCcchHH
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN--V-YGGDSGKLA 187 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~--~-~g~~~~~~~ 187 (771)
......+...++|+|..... .. . +....+..++...+..++++|...|.++++++.... . .. ....+
T Consensus 137 ~~~~~~l~~~~iPvV~i~~~--~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~ 206 (344)
T 3kjx_A 137 EAARAMLDAAGIPVVEIMDS--DG---K---PVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRA--RKRFE 206 (344)
T ss_dssp HHHHHHHHHCSSCEEEEEEC--SS---C---CSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHH--HHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCC--CC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccH--HHHHH
Confidence 23445566789999987433 11 1 222357788888899999999888999999998764 2 22 45578
Q ss_pred HHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEE
Q 004136 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVW 264 (771)
Q Consensus 188 ~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~ 264 (771)
.|++.+++.| +.+.....+.... + ...-...+.++.+. .+++|+. ++...+..+++++++.|+..+ +...
T Consensus 207 Gf~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~g~~vP~disv 279 (344)
T 3kjx_A 207 GFTEVLGKNG-VEIEDREFYSGGS---A-LAKGREMTQAMLERSPDLDFLYY--SNDMIAAGGLLYLLEQGIDIPGQIGL 279 (344)
T ss_dssp HHHHHHHHTT-CCCSCEEECSSCC---C-HHHHHHHHHHHHHHSTTCCEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHcC-CCCChheEEeCCC---C-HHHHHHHHHHHHhcCCCCCEEEE--CCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 8999999998 6554333222211 1 12223334443322 5777665 677788899999999998654 3444
Q ss_pred EeeC
Q 004136 265 IVTN 268 (771)
Q Consensus 265 i~~~ 268 (771)
++.+
T Consensus 280 vg~D 283 (344)
T 3kjx_A 280 AGFN 283 (344)
T ss_dssp ECSB
T ss_pred EEEC
Confidence 4443
No 135
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.64 E-value=0.001 Score=68.99 Aligned_cols=209 Identities=9% Similarity=0.012 Sum_probs=130.9
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE-cCCchHhH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEET 110 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~avi-Gp~~s~~~ 110 (771)
+..+||+++|.. .++......+++.+.++. |+++ .+.++..++....+....++ .+++.+|| .|..+...
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~i~~~~-~~~vdgiIi~~~~~~~~ 73 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEA-----GYKT--DLQYADDDIPNQLSQIENMV-TKGVKVLVIASIDGTTL 73 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHT-----TCEE--EEEECTTCHHHHHHHHHHHH-HHTCSEEEECCSSGGGG
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHc-----CCEE--EEeeCCCCHHHHHHHHHHHH-HcCCCEEEEEcCCchhH
Confidence 346899999976 445566777777777664 4554 44557788888888888888 56788666 45444444
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHH-------cCCeEEEEEEEeCCCCCCc
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-------YNWRRVAAIYEDNVYGGDS 183 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~-------~~w~~v~ii~~~~~~g~~~ 183 (771)
......+...++|+|..... .+.. . +....+..++...++.+++++.. .|.++++++..........
T Consensus 74 ~~~~~~~~~~giPvV~~~~~--~~~~--~--~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~ 147 (330)
T 3uug_A 74 SDVLKQAGEQGIKVIAYDRL--IRNS--G--DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAF 147 (330)
T ss_dssp HHHHHHHHHTTCEEEEESSC--CCSC--T--TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHH
T ss_pred HHHHHHHHHCCCCEEEECCC--CCCC--C--ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHH
Confidence 55566677889999988765 2221 1 12234667888888888888866 6888999997643321003
Q ss_pred chHHHHHHHHhcc---CCeEEEEeee----cCCCCCCCCchHHHHHHHHHhhh-----CCceEEEEEecChhHHHHHHHH
Q 004136 184 GKLALLAEALQNV---SSSEIQSRLV----LPPISSISDPKEAVRGELKKVQD-----KQSRVFIVLQASLDMTIHLFTE 251 (771)
Q Consensus 184 ~~~~~l~~~~~~~---g~~~i~~~~~----~~~~~~~~d~~~~~~~~l~~l~~-----~~~~vIv~~~~~~~~~~~il~~ 251 (771)
...+.|++.+++. |.+.+..... +.... .+ ...-...+.++.+ ..+++|+. .+...+..++++
T Consensus 148 ~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~~~~~~ai~~--~nd~~A~g~~~a 222 (330)
T 3uug_A 148 FFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLR--WD-PATAQARMDNLLSAYYTDAKVDAVLS--PYDGLSIGIISS 222 (330)
T ss_dssp HHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGG--GC-HHHHHHHHHHHHHHHCSSSCCCEEEC--SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCceEEeecccccccccCCC--CC-HHHHHHHHHHHHHhcCCCCCeEEEEE--CCCchHHHHHHH
Confidence 4467788888775 3133321100 00000 01 1222333343333 46676554 777788899999
Q ss_pred HHHcCCCCC
Q 004136 252 ANRMGLVGK 260 (771)
Q Consensus 252 a~~~g~~~~ 260 (771)
++++|+..+
T Consensus 223 l~~~g~~vP 231 (330)
T 3uug_A 223 LKGVGYGTK 231 (330)
T ss_dssp HHHTTCSSS
T ss_pred HHHcCCCCC
Confidence 999998654
No 136
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.64 E-value=0.0014 Score=68.57 Aligned_cols=209 Identities=17% Similarity=0.108 Sum_probs=126.1
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
...+||+++|.. .++......+++.+.++. |+.+.+ .++..++....+....++ .+++.+||-.......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~- 135 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKA-----GLATII--TNSNEDATTMSGSLEFLT-SHGVDGIICVPNEECA- 135 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHT-----TCCEEE--EECTTCHHHHHHHHHHHH-HTTCSCEEECCCGGGH-
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCHHHHHHHHHHHH-hCCCCEEEEeCCCCCh-
Confidence 456799999864 344455666666665553 555544 456667776666677777 6788876643332222
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcchHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALL 189 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~l 189 (771)
.....+...++|+|..... .+. ... +..+..++...+..++++|...|.++|++|..... .. ....+.|
T Consensus 136 ~~~~~l~~~~iPvV~i~~~--~~~--~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~Gf 206 (348)
T 3bil_A 136 NQLEDLQKQGMPVVLVDRE--LPG--DST---IPTATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTG--RERLEDF 206 (348)
T ss_dssp HHHHHHHHC-CCEEEESSC--CSC--C-C---CCEEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHH--HHHHHHH
T ss_pred HHHHHHHhCCCCEEEEccc--CCC--CCC---CCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccH--HHHHHHH
Confidence 3334455679999987654 221 012 22466777888888999998889999999986533 22 4457788
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCC-ceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEee
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ-SRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIVT 267 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~-~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~~ 267 (771)
++.+++.| +.... .+.... + ..+-...+.++.+.. + + |+ +++...+..+++++++.|+..+ +...++.
T Consensus 207 ~~al~~~g-~~~~~--v~~~~~---~-~~~~~~~~~~ll~~~~~-a-i~-~~nD~~A~g~~~al~~~G~~vP~disvvG~ 276 (348)
T 3bil_A 207 KAACANSK-IGEQL--VFLGGY---E-QSVGFEGATKLLDQGAK-T-LF-AGDSMMTIGVIEACHKAGLVIGKDVSVIGF 276 (348)
T ss_dssp HHHHHHTT-CCCCE--EECCCS---S-HHHHHHHHHHHHHTTCS-E-EE-ESSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHHHcC-cCccE--EEcCCC---C-HHHHHHHHHHHHcCCCC-E-EE-EcChHHHHHHHHHHHHcCCCCCCCeEEEEe
Confidence 99999988 62211 111111 1 122334455554433 5 4 44 5677778899999999998643 4445554
Q ss_pred Cc
Q 004136 268 NT 269 (771)
Q Consensus 268 ~~ 269 (771)
+.
T Consensus 277 D~ 278 (348)
T 3bil_A 277 DT 278 (348)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 137
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.63 E-value=0.002 Score=67.48 Aligned_cols=213 Identities=8% Similarity=0.069 Sum_probs=131.0
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
..-+||+++|.. .+.......+++-+.++. |+.+ .+.++..++....+....++ .+++.++|-...... .
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdGiI~~~~~~~-~ 139 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG-----GLQL--LLGYTAYSPEREEQLVETML-RRRPEAMVLSYDGHT-E 139 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHT-----TCEE--EEEECTTCHHHHHHHHHHHH-HTCCSEEEEECSCCC-H
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCChHHHHHHHHHHH-hCCCCEEEEeCCCCC-H
Confidence 456799999875 333345555666555553 5555 44566667777777777777 678886653222211 2
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCC-CcchHHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG-DSGKLALLA 190 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~-~~~~~~~l~ 190 (771)
.....+...++|+|..... +. . +....+..++...+..++++|...|.+++++|........ .....+.|+
T Consensus 140 ~~~~~l~~~~iPvV~i~~~---~~--~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~ 211 (355)
T 3e3m_A 140 QTIRLLQRASIPIVEIWEK---PA--H---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFK 211 (355)
T ss_dssp HHHHHHHHCCSCEEEESSC---CS--S---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCc---cC--C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHH
Confidence 3344566779999987533 11 1 2223577888888889999998889999999998644220 045678899
Q ss_pred HHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh--CCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEee
Q 004136 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIVT 267 (771)
Q Consensus 191 ~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~~ 267 (771)
+.+++.| +.+.....+..... + ..+-...+.++.+ ..+++|+. ++...+..++++++++|+..+ +...++.
T Consensus 212 ~al~~~g-~~~~~~~~~~~~~~--~-~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP~disvigf 285 (355)
T 3e3m_A 212 RAMREAG-LNPDQEIRLGAPPL--S-IEDGVAAAELILQEYPDTDCIFC--VSDMPAFGLLSRLKSIGVAVPEQVSVVGF 285 (355)
T ss_dssp HHHHHTT-SCSCCEEEESCSSC--C-HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHHTCCTTTTCEEECS
T ss_pred HHHHHCC-cCCCccEEEecCCC--C-HHHHHHHHHHHHcCCCCCcEEEE--CChHHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 9999998 65432122211110 1 1223333444433 35777665 777788889999999998644 3444443
Q ss_pred C
Q 004136 268 N 268 (771)
Q Consensus 268 ~ 268 (771)
+
T Consensus 286 D 286 (355)
T 3e3m_A 286 G 286 (355)
T ss_dssp S
T ss_pred C
Confidence 3
No 138
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.62 E-value=0.0016 Score=67.78 Aligned_cols=208 Identities=10% Similarity=0.067 Sum_probs=133.4
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-CCchHhH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~s~~~ 110 (771)
..-+||+++|.. .+.......+++.+.++. |+.+ .+.++..++....+....++ .+++.+||- |.....
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdGiIi~~~~~~~- 131 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAA-----GYQM--LIGNSHYDAGQELQLLRAYL-QHRPDGVLITGLSHAE- 131 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHT-----TCEE--EEEECTTCHHHHHHHHHHHH-TTCCSEEEEECSCCCT-
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCChHHHHHHHHHHH-cCCCCEEEEeCCCCCH-
Confidence 456899999875 455667778888777764 4554 45667778887777778887 778886653 322221
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC-CCCCcchHHHH
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALL 189 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~~l 189 (771)
.....+...++|+|..... .+ . +.. .+..++...+..++++|...|.++++++..... .. ....+.+
T Consensus 132 -~~~~~l~~~~iPvV~~~~~--~~----~--~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~--~~R~~Gf 199 (339)
T 3h5o_A 132 -PFERILSQHALPVVYMMDL--AD----D--GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERV--MKRLDGY 199 (339)
T ss_dssp -THHHHHHHTTCCEEEEESC--CS----S--SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHH--HHHHHHH
T ss_pred -HHHHHHhcCCCCEEEEeec--CC----C--CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccH--HHHHHHH
Confidence 3344566779999987543 11 1 122 677888888899999998889999999987643 22 4456788
Q ss_pred HHHHhccCCeEEEE-eeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEE
Q 004136 190 AEALQNVSSSEIQS-RLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWI 265 (771)
Q Consensus 190 ~~~~~~~g~~~i~~-~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i 265 (771)
++.+++.| ..... ........ + ...-...+.++.+. .+++|+. ++...+..+++++++.|+..+ +...+
T Consensus 200 ~~al~~~g-~~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 200 RAALDAAD-CRDAGLEWLDPQPS---S-MQMGADMLDRALAERPDCDALFC--CNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp HHHHHHTT-CCCGGGEEEECSCC---C-HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHCC-CCCCChheEecCCC---C-HHHHHHHHHHHHcCCCCCcEEEE--CChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 89999888 52111 11111111 1 12233344444332 5777665 777788899999999998654 34444
Q ss_pred eeC
Q 004136 266 VTN 268 (771)
Q Consensus 266 ~~~ 268 (771)
+-+
T Consensus 273 gfD 275 (339)
T 3h5o_A 273 GFN 275 (339)
T ss_dssp CSB
T ss_pred EEC
Confidence 443
No 139
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.62 E-value=0.00054 Score=69.52 Aligned_cols=211 Identities=9% Similarity=0.056 Sum_probs=129.9
Q ss_pred CCcEEEEEEEeC--CCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHh
Q 004136 32 EEVTKIGAIVDA--NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (771)
Q Consensus 32 ~~~I~IG~i~p~--s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~ 109 (771)
....+||+++|. +.+.......+++-+.++. |+.+.+...+...+ ...+....+. .+++.+||-......
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~--~~~~~~~~l~-~~~vdgiIi~~~~~~ 80 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ-----NYNYNVVICPYKTD--CLHLEKGISK-ENSFDAAIIANISNY 80 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT-----TTCSEEEEEEECTT--CGGGCGGGST-TTCCSEEEESSCCHH
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHc-----CCeEEEEecCCCch--hHHHHHHHHh-ccCCCEEEEecCCcc
Confidence 456889999993 3455566777777776664 45555543332222 1223334444 778887775433333
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHH
Q 004136 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (771)
Q Consensus 110 ~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l 189 (771)
...+.. +...++|+|..... .+ .+-.+..++...++.++++|...|.++++++.............+.|
T Consensus 81 ~~~~~~-~~~~~iPvV~~~~~--~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 149 (289)
T 3g85_A 81 DLEYLN-KASLTLPIILFNRL--SN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGF 149 (289)
T ss_dssp HHHHHH-HCCCSSCEEEESCC--CS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHH
T ss_pred cHHHHH-hccCCCCEEEECCC--CC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHH
Confidence 333333 34679999988755 22 12357788888999999999888999999998764321004467889
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEe
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIV 266 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~ 266 (771)
++.+++.| +.+.....+.... + ..+....+.++.+. .+++|+. ++...+..++++++++|+..+ +...++
T Consensus 150 ~~~l~~~~-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vig 222 (289)
T 3g85_A 150 IETCHKNG-IKISENHIIAAEN---S-IHGGVDAAKKLMKLKNTPKALFC--NSDSIALGVISVLNKRQISIPDDIEIVA 222 (289)
T ss_dssp HHHHHHTT-CBCCGGGEEECCS---S-HHHHHHHHHHHTTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHcC-CCCChhheeccCC---C-HHHHHHHHHHHHcCCCCCcEEEE--cCCHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 99999988 6543211111111 1 13344455555543 5677665 777788899999999998644 444454
Q ss_pred eC
Q 004136 267 TN 268 (771)
Q Consensus 267 ~~ 268 (771)
.+
T Consensus 223 ~d 224 (289)
T 3g85_A 223 IG 224 (289)
T ss_dssp EE
T ss_pred eC
Confidence 44
No 140
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.58 E-value=0.0014 Score=66.08 Aligned_cols=204 Identities=13% Similarity=0.072 Sum_probs=133.8
Q ss_pred CCcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhH
Q 004136 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (771)
Q Consensus 32 ~~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~ 110 (771)
+.+-+||+++|.. .+.......+++-+.++. |+.+ +.+.++..++....+....++ .+++.++|-..
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~-~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~----- 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE-----GYTA-LISFSTNSDVKKYQNAIINFE-NNNVDGIITSA----- 75 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEE-EEEECSSCCHHHHHHHHHHHH-HTTCSEEEEEC-----
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC-----CCCE-EEEEeCCCChHHHHHHHHHHH-hCCCCEEEEcc-----
Confidence 3567899999875 344456666666666553 4540 445677778887777777777 77888766422
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHH
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~ 190 (771)
.....+...++|+|..... . ..+ +.+ .+..++...++.++++|. .|.++++++.............+.|+
T Consensus 76 -~~~~~~~~~~iPvV~~~~~--~--~~~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~ 145 (277)
T 3hs3_A 76 -FTIPPNFHLNTPLVMYDSA--N--IND---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMT 145 (277)
T ss_dssp -CCCCTTCCCSSCEEEESCC--C--CCS---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHH
T ss_pred -hHHHHHHhCCCCEEEEccc--c--cCC---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHH
Confidence 1223456779999977632 1 111 234 788888888999999988 99999999987643210145678899
Q ss_pred HHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh--CCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEee
Q 004136 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIVT 267 (771)
Q Consensus 191 ~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~~ 267 (771)
+.+++.| +.+... ...... + .+.+.++.+ ..+++|+. .+...+..+++++++.|+..+ +...++.
T Consensus 146 ~~l~~~g-~~~~~~-~~~~~~------~--~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~vig~ 213 (277)
T 3hs3_A 146 AEASKLK-IDYLLE-ETPENN------P--YISAQSALNKSNQFDAIIT--VNDLYAAEIIKEAKRRNLKIPDDFQLVGY 213 (277)
T ss_dssp HHHHHTT-CEEEEE-ECCSSC------H--HHHHHHHHHTGGGCSEEEC--SSHHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred HHHHHCC-CCCCCC-CccCCc------h--HHHHHHHHcCCCCCCEEEE--CCHHHHHHHHHHHHHcCCCCCCceEEEee
Confidence 9999999 777654 333222 1 333344433 35777654 677778899999999998643 4445544
Q ss_pred Cc
Q 004136 268 NT 269 (771)
Q Consensus 268 ~~ 269 (771)
+.
T Consensus 214 d~ 215 (277)
T 3hs3_A 214 DN 215 (277)
T ss_dssp BC
T ss_pred CC
Confidence 43
No 141
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.58 E-value=0.0017 Score=65.26 Aligned_cols=199 Identities=10% Similarity=0.043 Sum_probs=120.0
Q ss_pred CCcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhH
Q 004136 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (771)
Q Consensus 32 ~~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~ 110 (771)
..+.+||+++|.. .+.......+++.+.++. |+.+.+. ++..++....+ + ++.+||-.......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~--~~~~~~~~~~~----~----~vdgiI~~~~~~~~ 70 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALF-----DYEMIVC--SGKKSHLFIPE----K----MVDGAIILDWTFPT 70 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTT-----TCEEEEE--ESTTTTTCCCT----T----TCSEEEEECTTSCH
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHC-----CCeEEEE--eCCCCHHHHhh----c----cccEEEEecCCCCH
Confidence 3567899999864 445556666666665543 5666554 33323221110 1 56655432221112
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC--CCCCcchHHH
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLAL 188 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~~ 188 (771)
..+ ..+...++|+|..... .+. +.+..+..++...+..+++++...|.++++++..... .. ....+.
T Consensus 71 ~~~-~~l~~~~iPvV~~~~~--~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~g 139 (277)
T 3cs3_A 71 KEI-EKFAERGHSIVVLDRT--TEH------RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDS--QERLAV 139 (277)
T ss_dssp HHH-HHHHHTTCEEEESSSC--CCS------TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHH--HHHHHH
T ss_pred HHH-HHHHhcCCCEEEEecC--CCC------CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccH--HHHHHH
Confidence 222 3345579999987654 221 2345677888888888999998889999999987643 22 445778
Q ss_pred HHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC---CceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEE
Q 004136 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVW 264 (771)
Q Consensus 189 l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~---~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~ 264 (771)
|++.+++.| +++. .. ..... ..+-...+.++.+. ++++|+. .+...+..+++++++.|+..+ +...
T Consensus 140 f~~~l~~~g-~~~~-~~-~~~~~-----~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~v 209 (277)
T 3cs3_A 140 STRELTRFG-IPYE-II-QGDFT-----EPSGYAAAKKILSQPQTEPVDVFA--FNDEMAIGVYKYVAETNYQMGKDIRI 209 (277)
T ss_dssp HHHHHHHTT-CCEE-EE-ECCSS-----HHHHHHHHHHHTTSCCCSSEEEEE--SSHHHHHHHHHHHTTSSCCBTTTEEE
T ss_pred HHHHHHHcC-CCee-EE-eCCCC-----hhHHHHHHHHHHhcCCCCCcEEEE--cChHHHHHHHHHHHHcCCCCCCcEEE
Confidence 889999999 7665 21 11111 13334455555544 5677655 677778889999999998643 3433
Q ss_pred Ee
Q 004136 265 IV 266 (771)
Q Consensus 265 i~ 266 (771)
++
T Consensus 210 vg 211 (277)
T 3cs3_A 210 IG 211 (277)
T ss_dssp EC
T ss_pred EE
Confidence 33
No 142
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.57 E-value=0.0025 Score=66.10 Aligned_cols=203 Identities=12% Similarity=0.097 Sum_probs=129.8
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
..-+||+++|.. .++......+++.+.++. |+.+.+ .++.. +....+....++ .+++.+||-...
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~-~~~~~~~~~~l~-~~~vdGiIi~~~----- 128 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAA-----GYQMLV--AEANS-VQAQDVVMESLI-SIQAAGIIHVPV----- 128 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHH-----TCEEEE--EECCS-HHHHHHHHHHHH-HHTCSEEEECCC-----
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC-----CCEEEE--ECCCC-hHHHHHHHHHHH-hCCCCEEEEcch-----
Confidence 457899999875 344556677777776665 455554 44444 666566666666 678887775333
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~ 191 (771)
...+...++|+|..... .+. .. +-.+..++...+..++++|...|.++++++.............+.|++
T Consensus 129 --~~~~~~~~iPvV~~~~~--~~~---~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 129 --VGSIAPEGIPMVQLTRG--ELG---PG---FPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp --TTCCC-CCSCEEEECC---------CC---SCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred --HHHHhhCCCCEEEECcc--CCC---CC---CCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 34566789999988755 221 22 234677888888999999988899999999976432101456788999
Q ss_pred HHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCC-ceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEeeCc
Q 004136 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ-SRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIVTNT 269 (771)
Q Consensus 192 ~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~-~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~~~~ 269 (771)
.+++.| +. ......... ..+-...+.++.+.. +++|+. ++...+..+++++++.|+..+ +...++.+.
T Consensus 199 al~~~g-~~--~~~~~~~~~-----~~~~~~~~~~ll~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~disvig~D~ 268 (333)
T 3jvd_A 199 AASIYG-AE--VTFHFGHYS-----VESGEEMAQVVFNNGLPDALIV--ASPRLMAGVMRAFTRLNVRVPHDVVIGGYDD 268 (333)
T ss_dssp HHHHTT-CE--EEEEECCSS-----HHHHHHHHHHHHHTCCCSEEEE--CCHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred HHHHCC-CC--EEEecCCCC-----HHHHHHHHHHHhcCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 999999 76 111111111 123344445444333 777665 777778899999999998643 455555544
No 143
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.54 E-value=0.00042 Score=71.14 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=49.9
Q ss_pred CCChhHhhhCCceEEEecChHHHHHHHHh---cCCCCCCcc-cCCCCHHHHHHHHHcCCceEEEecchhHHHHHHh
Q 004136 673 VTDIQSLKSGNLKVGCVDDSFVKKYLEEV---LGFRSGNIV-PFGNTEANYIQKFENNTIDSLFLERPYEKVFLDK 744 (771)
Q Consensus 673 i~~~~dL~~~~~~~g~~~~s~~~~~l~~~---~~~~~~~~~-~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~ 744 (771)
|++++||. |.++++..++....++... .+.....+. .+.+ ..+.+++|.+|++||++.+.+.+.+...+
T Consensus 97 i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~-~~~~~~al~~G~vDa~~~~~~~~~~~~~~ 169 (308)
T 2x26_A 97 IKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLT-PADARAAFQQGNVDAWAIWDPYYSAALLQ 169 (308)
T ss_dssp CCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECC-HHHHHHHHHTTSSSEEEEETTHHHHHHHH
T ss_pred CCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecC-hHHHHHHHHcCCCCEEEecchhHHHHHhc
Confidence 88999998 8899998777665544331 333322332 2345 78899999999999999998888766654
No 144
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.54 E-value=0.001 Score=68.85 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=49.3
Q ss_pred CCChhHhhhCCceEEEecChHHHHHHHH---hcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHh
Q 004136 673 VTDIQSLKSGNLKVGCVDDSFVKKYLEE---VLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDK 744 (771)
Q Consensus 673 i~~~~dL~~~~~~~g~~~~s~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~ 744 (771)
|++++||. |.+|++..++....++.. ..+.....+.....+..+.+.+|.+|++||++...+.......+
T Consensus 123 I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~vDa~~~~~p~~~~~~~~ 195 (324)
T 3ksx_A 123 LRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQVDAWAIWDPWYSALTLD 195 (324)
T ss_dssp CCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTCCSEEEEETTHHHHHHHT
T ss_pred CCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHcCCCCEEEEccHHHHHHHhc
Confidence 89999998 999999877765543332 13333333332221288999999999999999988887765554
No 145
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.50 E-value=0.00052 Score=71.64 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=96.9
Q ss_pred HHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEeeEeee----ccceeeeecccceeeccEEEEEecCCCCCccccc
Q 004136 498 VVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTIL----GNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFT 573 (771)
Q Consensus 498 ~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t----~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~~ 573 (771)
+.+..|+++++. +. +++..++..|.+|++|+++++.... .++.....++.++...+..+++++.+..
T Consensus 58 ~~~~~g~~v~~~--~~-~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 128 (346)
T 3qsl_A 58 FFKDEGLDVSIA--DF-AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLP------ 128 (346)
T ss_dssp HHHHTTCEEEEE--EC-SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCT------
T ss_pred chHhhCCeEEEE--ec-CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCccc------
Confidence 346678885554 32 3588999999999999998766544 4566677777766666778888776511
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCcccchHHHHHHHHHHHhhccCcccccchhhHHHHHHHHHHHHHHH
Q 004136 574 KPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSHRANIQSNLTRVVVVLWLFVVFILT 653 (771)
Q Consensus 574 ~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Rl~~~~~~~~~li~~ 653 (771)
T Consensus 129 -------------------------------------------------------------------------------- 128 (346)
T 3qsl_A 129 -------------------------------------------------------------------------------- 128 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcccccceeecccCCCCCChhHhhhCCceEEEe-cChHHHHHHHH---hcCCCCC--CcccCCCCHHHHHHHHHcCC
Q 004136 654 SSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGCV-DDSFVKKYLEE---VLGFRSG--NIVPFGNTEANYIQKFENNT 727 (771)
Q Consensus 654 ~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~~-~~s~~~~~l~~---~~~~~~~--~~~~~~~~~~~~~~~v~~~~ 727 (771)
+|++++||. |.+|++. .++....+++. ..+.... +++.+.. ..+.+.+|.+|+
T Consensus 129 ------------------~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~-~~~~~~al~~G~ 187 (346)
T 3qsl_A 129 ------------------GYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGA-GAGAVTALRSGQ 187 (346)
T ss_dssp ------------------TCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCS-SHHHHHHHHHTS
T ss_pred ------------------CCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCC-cHHHHHHHHcCC
Confidence 189999998 8899997 56654433322 2333322 3345555 678999999999
Q ss_pred ceEEEecchhHHHHHHhc
Q 004136 728 IDSLFLERPYEKVFLDKY 745 (771)
Q Consensus 728 ~~a~i~~~~~~~~~~~~~ 745 (771)
+|+++...+.......+.
T Consensus 188 vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 188 IDAISNTDPVVSMLETSG 205 (346)
T ss_dssp CSEEEEETTHHHHHHHTT
T ss_pred ccEEEecchhHHHHHhCC
Confidence 999999888876655543
No 146
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.50 E-value=0.0031 Score=67.58 Aligned_cols=213 Identities=10% Similarity=0.059 Sum_probs=129.8
Q ss_pred CCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHH
Q 004136 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~ 111 (771)
+.+-+||+++|.+.+.......+++-+.++. |+.+.+...+... +....+. +++|.+||-.. ...
T Consensus 23 ~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~-----g~~~~i~~~~~~~------~~i~~l~-~~~vDGiIi~~---~~~ 87 (412)
T 4fe7_A 23 TKRHRITLLFNANKAYDRQVVEGVGEYLQAS-----QSEWDIFIEEDFR------ARIDKIK-DWLGDGVIADF---DDK 87 (412)
T ss_dssp CCCEEEEEECCTTSHHHHHHHHHHHHHHHHH-----TCCEEEEECC-CC---------------CCCSEEEEET---TCH
T ss_pred CCCceEEEEeCCcchhhHHHHHHHHHHHHhc-----CCCeEEEecCCcc------chhhhHh-cCCCCEEEEec---CCh
Confidence 4678999999976666667777777777765 4555555433221 1234444 67888777522 223
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCC--CcchHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG--DSGKLALL 189 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~--~~~~~~~l 189 (771)
.....+...++|+|..... .+... ..+.+-.+..++...+..+++++...|.++++++........ .....+.+
T Consensus 88 ~~~~~l~~~~iPvV~i~~~--~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~Gf 163 (412)
T 4fe7_A 88 QIEQALADVDVPIVGVGGS--YHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAF 163 (412)
T ss_dssp HHHHHHTTCCSCEEEEEEC--CSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHHH
T ss_pred HHHHHHhhCCCCEEEecCC--ccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHHH
Confidence 3455667789999988755 22211 113344578888888999999998899999999987654320 04567889
Q ss_pred HHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh--CCceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEEe
Q 004136 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWIV 266 (771)
Q Consensus 190 ~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i~ 266 (771)
++.+++.| ........ ......+ .......+.++.+ ..+++|+. ++...+..+++++++.|+..+ +...++
T Consensus 164 ~~al~~~g-~~~~~~~~--~~~~~~~-~~~~~~~~~~~l~~~~~~~aI~~--~nD~~A~g~~~al~~~G~~vP~disvig 237 (412)
T 4fe7_A 164 RQLVAEEK-YRGVVYQG--LETAPEN-WQHAQNRLADWLQTLPPQTGIIA--VTDARARHILQVCEHLHIPVPEKLCVIG 237 (412)
T ss_dssp HHHHTTSS-SCCEEECC--SCSSCSS-HHHHHHHHHHHHHHSCTTEEEEE--SSHHHHHHHHHHHHHHTCCTTTTSEEEE
T ss_pred HHHHHHcC-CCcccccc--ccccccc-hhhHHHHHHHHHHhCCCCeEEEE--EecHHHHHHHHHHHHcCCCCCceEEEEe
Confidence 99999988 65432111 1111111 1223333433332 35777665 777888899999999998643 455555
Q ss_pred eCc
Q 004136 267 TNT 269 (771)
Q Consensus 267 ~~~ 269 (771)
.+.
T Consensus 238 ~D~ 240 (412)
T 4fe7_A 238 IDN 240 (412)
T ss_dssp SSC
T ss_pred ecc
Confidence 443
No 147
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.45 E-value=0.0085 Score=61.57 Aligned_cols=211 Identities=16% Similarity=0.128 Sum_probs=116.6
Q ss_pred CcEEEEEEEeC---CC-cCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchH
Q 004136 33 EVTKIGAIVDA---NS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (771)
Q Consensus 33 ~~I~IG~i~p~---s~-~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~ 108 (771)
++.+||+++|. +. ++......|++.+.++. |+++.+. ++..+ ....+....++ ++++.+||......
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~-----g~~~~~~--~~~~~-~~~~~~l~~l~-~~~~dgIi~~~~~~ 73 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN-----NAKCKYV--TASTD-AEYVPSLSAFA-DENMGLVVACGSFL 73 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT-----TCEEEEE--ECCSG-GGHHHHHHHHH-HTTCSEEEEESTTT
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh-----CCeEEEE--eCCCH-HHHHHHHHHHH-HcCCCEEEECChhH
Confidence 45799999972 22 34445556666655553 4555443 33222 22345566776 67888777643221
Q ss_pred hHHHHHHhhcc-CCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHH----HHHHHHcCC-eEEEEEEEeCC-CCC
Q 004136 109 ETAVVAEIASR-VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCI----ADLARKYNW-RRVAAIYEDNV-YGG 181 (771)
Q Consensus 109 ~~~~v~~~~~~-~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~----~~~l~~~~w-~~v~ii~~~~~-~g~ 181 (771)
..++..++.. -++|++..... .+. .+.+-.+... ..++..+ +..+...|. ++|++|..... ..
T Consensus 74 -~~~~~~~a~~~p~~p~v~id~~--~~~-----~~~~~~v~~d-~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~- 143 (318)
T 2fqx_A 74 -VEAVIETSARFPKQKFLVIDAV--VQD-----RDNVVSAVFG-QNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMM- 143 (318)
T ss_dssp -HHHHHHHHHHCTTSCEEEESSC--CCS-----CTTEEEEEEC-HHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTT-
T ss_pred -HHHHHHHHHHCCCCEEEEEcCc--cCC-----CCCEEEEEec-hHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHH-
Confidence 1223444443 38998876643 110 1233333333 4444444 466666675 89999986532 22
Q ss_pred CcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCCCC
Q 004136 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (771)
Q Consensus 182 ~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~~ 261 (771)
....+.|++.+++.| ..+.....+... ..++ ..-.+...++.+.++++|+. +....+..++++++++|+.+++
T Consensus 144 -~~r~~Gf~~~~~~~~-~~~~~~~~~~~~--~~~~-~~g~~~a~~ll~~~~daI~~--~~d~~a~Gv~~a~~e~g~~P~d 216 (318)
T 2fqx_A 144 -PLFEAGFEAGVKAVD-PDIQVVVEVANT--FSDP-QKGQALAAKLYDSGVNVIFQ--VAGGTGNGVIKEARDRRLNGQD 216 (318)
T ss_dssp -HHHHHHHHHHHHHHC-TTCEEEEEECSC--SSCH-HHHHHHHHHHHHTTCCEEEE--ECGGGHHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHHHHHHC-CCCEEEEEEccC--ccCH-HHHHHHHHHHHHCCCcEEEE--CCCCCchHHHHHHHhhhhccCC
Confidence 456788888998877 544332222211 1121 22333445555567998766 5556677788999998876334
Q ss_pred eEEEeeCc
Q 004136 262 SVWIVTNT 269 (771)
Q Consensus 262 ~~~i~~~~ 269 (771)
...|+.+.
T Consensus 217 v~viG~D~ 224 (318)
T 2fqx_A 217 VWVIGVDR 224 (318)
T ss_dssp CEEEEEES
T ss_pred cEEEEEec
Confidence 44444444
No 148
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.45 E-value=0.00041 Score=70.99 Aligned_cols=78 Identities=9% Similarity=-0.089 Sum_probs=55.3
Q ss_pred ccccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEee-Eeeecc---ceeeeecccceeeccEEEEE
Q 004136 486 RYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGD-LTILGN---RTEYVEFTQPYAESGFSMIV 561 (771)
Q Consensus 486 ~~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~-~~~t~~---r~~~~~fs~p~~~~~~~~~v 561 (771)
.+.|+.+.+-+-+.++.|+++++. +.. ....++..|.+|++|+++++ ...... +...+.++.++...+..+++
T Consensus 16 ~~~~~~va~~~g~~~~~Gl~v~~~--~~~-~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~ 92 (302)
T 3ix1_A 16 VHTFLYVAIENGYFAEEGLDVDIV--FPT-NPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPLNHVMF 92 (302)
T ss_dssp GGHHHHHHHHTTHHHHTTEEEEEE--CCS-STTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSCCEEEEE
T ss_pred ccHHHHHHHHcChHHHcCCcEEEe--cCC-CCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccCCEEEEE
Confidence 678999999999999999885554 322 34579999999999999886 222223 33455666666666778888
Q ss_pred ecCCC
Q 004136 562 PAKQE 566 (771)
Q Consensus 562 ~~~~~ 566 (771)
++.++
T Consensus 93 ~~~s~ 97 (302)
T 3ix1_A 93 LAEQD 97 (302)
T ss_dssp EGGGC
T ss_pred ECCCC
Confidence 77653
No 149
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=97.44 E-value=0.00036 Score=71.42 Aligned_cols=214 Identities=10% Similarity=0.083 Sum_probs=133.5
Q ss_pred CCcEEEEEEEeCC-CcCch-HHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEc-CCchH
Q 004136 32 EEVTKIGAIVDAN-SQMGK-QAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWE 108 (771)
Q Consensus 32 ~~~I~IG~i~p~s-~~~g~-~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~s~ 108 (771)
...-+||+++|.. .+... ....+++.+.++. |+.+. +.++..++....+....++ .+++.+||- |....
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN-----GKTIL--IANTGGSSEREVEIWKMFQ-SHRIDGVLYVTMYRR 82 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHH-HTTCSEEEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC-----CCEEE--EEeCCCChHHHHHHHHHHH-hCCCCEEEEecCCcc
Confidence 3567899999976 34445 7888888777775 45554 4566677777777777777 678886663 22222
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHH
Q 004136 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (771)
Q Consensus 109 ~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (771)
. ....+...++|+|..... .+.. .. +..+..++...+..++++|...|.++|+++.............+.
T Consensus 83 ~---~~~~~~~~~iPvV~~~~~--~~~~--~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (301)
T 3miz_A 83 I---VDPESGDVSIPTVMINCR--PQTR--EL---LPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDA 152 (301)
T ss_dssp E---CCCCCTTCCCCEEEEEEE--CSST--TS---SCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHH
T ss_pred H---HHHHHHhCCCCEEEECCC--CCCC--CC---CCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHH
Confidence 2 344566789999988754 2211 02 234678888889999999988999999999976442100455788
Q ss_pred HHHHHhccCCeEEEEeeecCC---CCCCCCchHHHHHHHHHhhh--CCceEEEEEecChhHHHHHHHHHHHcCCCCC-Ce
Q 004136 189 LAEALQNVSSSEIQSRLVLPP---ISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGK-DS 262 (771)
Q Consensus 189 l~~~~~~~g~~~i~~~~~~~~---~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~ 262 (771)
+++.+++.| +.+.....+.. ..+..+.. ....+.++.+ ..+++|+. ++...+..++++++++|+..+ +.
T Consensus 153 f~~al~~~g-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di 227 (301)
T 3miz_A 153 FRRTTSEFG-LTENDLSISLGMDGPVGAENNY--VFAAATEMLKQDDRPTAIMS--GNDEMAIQIYIAAMALGLRIPQDV 227 (301)
T ss_dssp HHHHHHHHT-CCGGGEEEEECEESSTTSCEEC--HHHHHHHHHTSTTCCSEEEE--SSHHHHHHHHHHHHTTTCCHHHHC
T ss_pred HHHHHHHcC-CCCCcceEEEcCCCCcCccccH--HHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCCe
Confidence 899999888 64321111111 11111111 0133333333 25777765 677778899999999998633 23
Q ss_pred EEEeeC
Q 004136 263 VWIVTN 268 (771)
Q Consensus 263 ~~i~~~ 268 (771)
..++.+
T Consensus 228 ~vig~D 233 (301)
T 3miz_A 228 SIVGFD 233 (301)
T ss_dssp EEECSB
T ss_pred eEEEeC
Confidence 344433
No 150
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.34 E-value=0.026 Score=57.24 Aligned_cols=196 Identities=12% Similarity=0.121 Sum_probs=114.3
Q ss_pred CcEEEEEEEeC--CC-cCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHh
Q 004136 33 EVTKIGAIVDA--NS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (771)
Q Consensus 33 ~~I~IG~i~p~--s~-~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~ 109 (771)
.+.+||+++|- +. ++......|++.+.++. |+++ .+.++..++....+....++ ++++.+||......
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~l~~l~-~~~vdgIi~~~~~~- 74 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL-----DVDV--VLEEGVNSEQKAHRRIKELV-DGGVNLIFGHGHAF- 74 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS-----CCEE--EEECCCCSHHHHHHHHHHHH-HTTCCEEEECSTHH-
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh-----CCeE--EEEeCCCCHHHHHHHHHHHH-HCCCCEEEEcCHhH-
Confidence 45789999973 33 56667777777766664 4554 44555455555556667777 78899988754332
Q ss_pred HHHHHHhhccC-CccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHc-CCeEEEEEEEeCCCCCCcchHH
Q 004136 110 TAVVAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-NWRRVAAIYEDNVYGGDSGKLA 187 (771)
Q Consensus 110 ~~~v~~~~~~~-~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~-~w~~v~ii~~~~~~g~~~~~~~ 187 (771)
..++..++... ++|++..... .+ . +.+-.+......-+..+..++.+. +-++|++|..... . . ..+
T Consensus 75 ~~~~~~~~~~~p~~p~v~id~~--~~---~---~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~-~--~-r~~ 142 (296)
T 2hqb_A 75 AEYFSTIHNQYPDVHFVSFNGE--VK---G---ENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPW-Q--P-EVE 142 (296)
T ss_dssp HHHHHTTTTSCTTSEEEEESCC--CC---S---SSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCTT-C--H-HHH
T ss_pred HHHHHHHHHHCCCCEEEEEecC--cC---C---CCEEEEEechHHHHHHHHHHHHhhccCCeEEEEcCcCc-h--h-hHH
Confidence 23345555543 8898876543 11 1 233334444444333333333332 4589999986532 2 4 688
Q ss_pred HHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcC
Q 004136 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMG 256 (771)
Q Consensus 188 ~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g 256 (771)
.|++.+++.| .. .....+... ..++ ..-.+..+++.+.++++|+. ++...+..+++++++.|
T Consensus 143 Gf~~~~~~~~-~~-~~~~~~~~~--~~~~-~~g~~~a~~ll~~~~daI~~--~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 143 GFVDGAKYMN-ES-EAFVRYVGE--WTDA-DKALELFQELQKEQVDVFYP--AGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHHHTT-CC-EEEEEECSS--SSCH-HHHHHHHHHHHTTTCCEEEC--CCTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CC-eEEEEeecc--ccCH-HHHHHHHHHHHHCCCcEEEE--CCCCCCHHHHHHHHHcC
Confidence 8999999988 64 322222211 1121 22334445555567887665 56666778889999988
No 151
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.25 E-value=0.015 Score=60.70 Aligned_cols=209 Identities=11% Similarity=0.035 Sum_probs=121.8
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCC-CHHHHHHHHHHHHhcCCeEEEE--cCCchH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIA--GMETWE 108 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~-~~~~a~~~~~~li~~~~v~avi--Gp~~s~ 108 (771)
...+||+++|.- .+.......+++.+.++. |+.+.+. ++.. ++....+....++ .+++.+|| ++....
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~--~~~~~~~~~~~~~l~~l~-~~~vdGiIi~~~~~~~ 131 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQL-----GASVVVS--MVERSGVEACKTAVHNLL-AQRVSGLIINYPLDDQ 131 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEEEE--ECCSSSHHHHHHHHHHHH-TTTCSCEEEESCCCHH
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHc-----CCEEEEE--eCCCCcHHHHHHHHHHHH-HCCCCEEEEecCCCCh
Confidence 467899999864 333345555655555442 5666553 4333 3455555566676 67787655 344332
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHH
Q 004136 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (771)
Q Consensus 109 ~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~ 188 (771)
. .....+...++|+|..... . ....+ .+..++...+..++++|...|.++|++|.............+.
T Consensus 132 ~--~~~~~~~~~~iPvV~i~~~--~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~G 200 (349)
T 1jye_A 132 D--AIAVEAACTNVPALFLDVS--D----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG 200 (349)
T ss_dssp H--HHHHHHHTTTSCEEESSSC--T----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHH
T ss_pred h--HHHHHHhhCCCCEEEEccc--C----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 2 2223344579999987533 1 11223 3566777777888888877899999999865432100345678
Q ss_pred HHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecChhHHHHHHHHHHHcCCCCC-CeEEE
Q 004136 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWI 265 (771)
Q Consensus 189 l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~~~~~~~il~~a~~~g~~~~-~~~~i 265 (771)
|++.+++.| +.+.... .. .. +. .+-...+.++.+. .+++|+. ++...+..+++++++.|+..+ +...+
T Consensus 201 f~~al~~~g-i~~~~~~-~~-~~---~~-~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 201 WHKYLTRNQ-IQPIAER-EG-DW---SA-MSGFQQTMQMLNEGIVPTAMLV--ANDQMALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp HHHHHHHTT-CCCSEEE-EC-CS---SH-HHHHHHHHHHHHTTCCCSEEEE--SSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHcC-CCccccc-cC-CC---Ch-HHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 889999988 6533221 11 11 11 2222333444332 4777665 667778889999999998643 44445
Q ss_pred eeCc
Q 004136 266 VTNT 269 (771)
Q Consensus 266 ~~~~ 269 (771)
+.+.
T Consensus 272 GfD~ 275 (349)
T 1jye_A 272 GYDD 275 (349)
T ss_dssp CSBC
T ss_pred EECC
Confidence 4443
No 152
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.21 E-value=0.00045 Score=72.10 Aligned_cols=69 Identities=9% Similarity=0.134 Sum_probs=48.3
Q ss_pred CCChhHh-hhCCceEEEecChHHHH-----HHHHhcCCCCCCcc--cCCCCHHHHHHHHHcCCceEEEecchhHHHHHHh
Q 004136 673 VTDIQSL-KSGNLKVGCVDDSFVKK-----YLEEVLGFRSGNIV--PFGNTEANYIQKFENNTIDSLFLERPYEKVFLDK 744 (771)
Q Consensus 673 i~~~~dL-~~~~~~~g~~~~s~~~~-----~l~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~ 744 (771)
|++++|| . |.+||+..++.... ++++ .+.....+. .+ . ..+.+.++.+|++||++...++......+
T Consensus 145 I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~-~Gl~~~dv~~~~~-~-~~~~~~al~~G~vDa~~~~~p~~~~~~~~ 219 (341)
T 3un6_A 145 LNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQ-LKIKPGHFSYHEM-S-PAEMPAALSEHRITGYSVAEPFGALGEKL 219 (341)
T ss_dssp GGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHH-TTCCTTSEEEEEC-C-GGGHHHHHHTTSCSEEEEETTHHHHHHHS
T ss_pred CCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHH-cCCCHHHeEEEEc-C-hHHHHHHHHcCCCCEEEecCCHHHHHHhc
Confidence 8999999 7 99999976533322 3333 444433333 33 3 67889999999999999999987766655
Q ss_pred cC
Q 004136 745 YC 746 (771)
Q Consensus 745 ~c 746 (771)
..
T Consensus 220 ~~ 221 (341)
T 3un6_A 220 GK 221 (341)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 153
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.12 E-value=0.038 Score=57.33 Aligned_cols=201 Identities=12% Similarity=0.052 Sum_probs=119.4
Q ss_pred CCcEEEEEEEeCC---CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchH
Q 004136 32 EEVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (771)
Q Consensus 32 ~~~I~IG~i~p~s---~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~ 108 (771)
+++.+||+++|-. ..+......|++.+.++.+ .++++.+.++..+.....+..++++ ++++.+||+....
T Consensus 24 ~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G-----~~~~~~~~e~~~~~~d~~~~l~~l~-~~g~d~Ii~~g~~- 96 (356)
T 3s99_A 24 EEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG-----DKVETTFLENVAEGADAERSIKRIA-RAGNKLIFTTSFG- 96 (356)
T ss_dssp --CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT-----TTEEEEEECSCCTTHHHHHHHHHHH-HTTCSEEEECSGG-
T ss_pred CCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC-----CceEEEEEecCCCHHHHHHHHHHHH-HCCCCEEEECCHH-
Confidence 4779999999743 2344566677776666653 1366677776656556677788888 6889999986433
Q ss_pred hHHHHHHhhccC-CccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHH--HHcCCeEEEEEEEeCCCCCCcch
Q 004136 109 ETAVVAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA--RKYNWRRVAAIYEDNVYGGDSGK 185 (771)
Q Consensus 109 ~~~~v~~~~~~~-~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l--~~~~w~~v~ii~~~~~~g~~~~~ 185 (771)
...++..++..+ ++|++..... .+ .+++...... ..++..++-.+ .--+-++|++|........ ...
T Consensus 97 ~~~~~~~vA~~~Pdv~fv~id~~--~~------~~Nv~sv~~~-~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v-~~~ 166 (356)
T 3s99_A 97 YMDPTVKVAKKFPDVKFEHATGY--KT------ADNMSAYNAR-FYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEV-VQG 166 (356)
T ss_dssp GHHHHHHHHTTCTTSEEEEESCC--CC------BTTEEEEEEC-HHHHHHHHHHHHHHHCSSCEEEEEECCCCHHH-HHH
T ss_pred HHHHHHHHHHHCCCCEEEEEecc--cc------CCcEEEEEec-hhHHHHHHHHHHHHhcCCCEEEEECCCccHHH-HHH
Confidence 345566666664 7888765433 11 1333333332 34454444432 1112479999987543211 334
Q ss_pred HHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCC
Q 004136 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (771)
Q Consensus 186 ~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~ 257 (771)
.+.|.+.++..+ ..+.....+... ..|+ ..-.+....+.+.++|+|+. ..+.. .++++|++.|.
T Consensus 167 ~~GF~~G~k~~n-p~i~v~~~~~g~--~~d~-~kg~~~a~~l~~~G~DvIf~-~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 167 INSFMLGAQSVN-PDFRVKVIWVNS--WFDP-GKEADAAKALIDQGVDIITQ-HTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHTTC-TTCEEEEEECSS--SCCH-HHHHHHHHHHHHTTCSEEEE-SSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHC-CCCEEEEEECCC--CCCh-HHHHHHHHHHHhCCCcEEEE-CCCch---HHHHHHHHcCC
Confidence 677888888776 443333333221 1222 22344556666679999888 66554 67899999874
No 154
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=97.11 E-value=0.023 Score=58.32 Aligned_cols=220 Identities=12% Similarity=0.114 Sum_probs=131.9
Q ss_pred CcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCC--------CCcEEEEEEecCCCCH-----HHHHHHHHHHHhcCCeE
Q 004136 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS--------RNHKLSLQIRDHNRDP-----FQAATAAQELINKEKVK 99 (771)
Q Consensus 33 ~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~--------~g~~i~l~~~D~~~~~-----~~a~~~~~~li~~~~v~ 99 (771)
...+||++.+.-+ .+....++++..+++-|..+ ....+.+++..+-.|+ ..+.....++..+.++.
T Consensus 11 ~~~~igi~t~t~s-~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gyk 89 (371)
T 3qi7_A 11 DDFKVAVVTQPLS-ENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEVQ 89 (371)
T ss_dssp CCEEEEEEECCTT-TCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTEE
T ss_pred CCeEEEEEcCCcC-CCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCCe
Confidence 5699999986653 45778889999999988733 1233445544433333 34677888888888999
Q ss_pred EEEcCCchHhHHHHHHhhccCCccEEeecCCCC-CCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCC
Q 004136 100 VIAGMETWEETAVVAEIASRVQVPILSFAAPAV-TPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV 178 (771)
Q Consensus 100 aviGp~~s~~~~~v~~~~~~~~iP~Is~~a~~~-~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~ 178 (771)
+||..............+.+.+++.|-..+... .+..... +..+ .+..++..-+..+++.|...|.+++++|.....
T Consensus 90 ~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~-~~di-~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~ 167 (371)
T 3qi7_A 90 AIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQ-FVDV-NLGVSAEERGKVLAERSKEMGAKAFIHYASTDD 167 (371)
T ss_dssp EEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHH-HSSE-EEECCHHHHHHHHHHHHHHTTCSCEEEEEETTG
T ss_pred EEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcc-cCce-EEEeChHHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 888643332223344556666666544333300 1111000 1122 566677777777889999999999999997543
Q ss_pred CCC--CcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHH-----hhh-CCceEEEEEecChhHHHHHHH
Q 004136 179 YGG--DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKK-----VQD-KQSRVFIVLQASLDMTIHLFT 250 (771)
Q Consensus 179 ~g~--~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~-----l~~-~~~~vIv~~~~~~~~~~~il~ 250 (771)
... .....+.+++++++.| +...... .+... .........+.|.+ +.+ ..++.||. ++...+..+++
T Consensus 168 ~~~~~~~~R~~Gyk~Al~e~G-i~~~~~~-~~d~t-~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFa--tND~mAiG~ik 242 (371)
T 3qi7_A 168 LKDVNIAKRLEMIKETCKNIG-LPFVQVN-TPNIN-TEEDKNKVKQFLNEDIEKQVKKYGKDINVFG--VNEYMDEVILT 242 (371)
T ss_dssp GGSHHHHHHHHHHHHHHHHTT-CCEEEEE-ECCCS-STHHHHHHHHHHHHHHHHHHHHHCSCCEEEE--SSHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcC-CCceeec-CCCCc-hHHHHHHHHHHHhccccchhhccCCCcEEEE--CCHHHHHHHHH
Confidence 210 0224677999999999 7665442 22111 10001112222221 112 23466655 88889999999
Q ss_pred HHHHcCCCCC
Q 004136 251 EANRMGLVGK 260 (771)
Q Consensus 251 ~a~~~g~~~~ 260 (771)
+++++|..-|
T Consensus 243 al~e~Gi~VP 252 (371)
T 3qi7_A 243 KALELKYIVA 252 (371)
T ss_dssp HHHHHCCBBC
T ss_pred HHHHcCCccC
Confidence 9999997543
No 155
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=96.99 E-value=0.027 Score=57.22 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=48.5
Q ss_pred CCChhHhhh------CCceEEEec-ChHHHH---HHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHH
Q 004136 673 VTDIQSLKS------GNLKVGCVD-DSFVKK---YLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFL 742 (771)
Q Consensus 673 i~~~~dL~~------~~~~~g~~~-~s~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~ 742 (771)
++|++||.. ..+++|... ++..+- .+.+..+... ..+.|.. ..+.+.+|..|++|+++.+...+..++
T Consensus 123 ~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~-~~Vpy~G-~~~a~~aL~~G~VD~~~~~~~~~~~~i 200 (312)
T 2f5x_A 123 PNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNL-LTIPYKG-TAPAMNDLLGKQVDLMCDQTTNTTQQI 200 (312)
T ss_dssp CCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCC-EEEECSS-HHHHHHHHHTTSSCEEEEEHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCCe-EEeccCC-hHHHHHHHHcCCccEEEechHHHHHHH
Confidence 899999963 357898863 444332 2333334332 2357887 889999999999999999887766555
Q ss_pred Hh
Q 004136 743 DK 744 (771)
Q Consensus 743 ~~ 744 (771)
+.
T Consensus 201 ~~ 202 (312)
T 2f5x_A 201 TS 202 (312)
T ss_dssp HT
T ss_pred Hc
Confidence 44
No 156
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=96.85 E-value=0.041 Score=55.69 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=60.7
Q ss_pred CCChhHhhh------CCceEEEec-ChHHHH---HHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHH
Q 004136 673 VTDIQSLKS------GNLKVGCVD-DSFVKK---YLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFL 742 (771)
Q Consensus 673 i~~~~dL~~------~~~~~g~~~-~s~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~ 742 (771)
++|++||.. ..+.+|... ++..+- .+.+..+... ..+.|.. ..+.+.+|..|++|+++.+...+..++
T Consensus 114 ~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~~-~~Vpy~g-~~~a~~al~~G~vD~~~~~~~~~~~~i 191 (301)
T 2qpq_A 114 YKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHM-VHVPYKG-CGPALNDVLGSQIGLAVVTASSAIPFI 191 (301)
T ss_dssp CCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCCC-EEEECSS-HHHHHHHHHTTSSSCEEEEHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCCe-EEeccCC-hHHHHHHHHCCCccEEEEcHHHHHHHH
Confidence 899999963 347888863 444332 2333334332 2357887 889999999999999999877766555
Q ss_pred HhcCCceeEee-e---------------------e-eeceEEEEEecCCC
Q 004136 743 DKYCKKYTAIN-T---------------------Y-RFGGLGFVSNIIYS 769 (771)
Q Consensus 743 ~~~c~~l~~~~-~---------------------~-~~~~~g~~~~k~s~ 769 (771)
+. .+ ++.+. . + ....+|++.||+-|
T Consensus 192 ~~-g~-lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p 239 (301)
T 2qpq_A 192 KA-GK-LQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATP 239 (301)
T ss_dssp HT-TS-EEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCC
T ss_pred hc-CC-eEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCC
Confidence 43 33 44432 1 1 12357999999865
No 157
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.84 E-value=0.0072 Score=63.56 Aligned_cols=214 Identities=9% Similarity=0.067 Sum_probs=120.8
Q ss_pred CcEEEEEEEeCCCc--CchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhH
Q 004136 33 EVTKIGAIVDANSQ--MGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (771)
Q Consensus 33 ~~I~IG~i~p~s~~--~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~ 110 (771)
..-+||+++|.... ....+...+..++++.-. |+.+.+...+...+. .-.+....+. .+++.+||-......
T Consensus 67 ~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~---g~~~~~~~~~~~~~~-~~~~~~~~l~-~~~vdGiIi~~~~~~- 140 (366)
T 3h5t_A 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG---DTQLTLIPASPASSV-DHVSAQQLVN-NAAVDGVVIYSVAKG- 140 (366)
T ss_dssp -CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS---SCEEEEEECCCCTTC-CHHHHHHHHH-TCCCSCEEEESCCTT-
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHh---hCCEEEEEcCCCccH-HHHHHHHHHH-hCCCCEEEEecCCCC-
Confidence 45789999997421 112233333334443322 677777665543321 1223344454 677775553211111
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEe--------------
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED-------------- 176 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~-------------- 176 (771)
......+...++|+|..... .+ ....+ .+..++...+..++++|...|.+++++|...
T Consensus 141 ~~~~~~l~~~~iPvV~i~~~--~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~ 212 (366)
T 3h5t_A 141 DPHIDAIRARGLPAVIADQP--AR---EEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRER 212 (366)
T ss_dssp CHHHHHHHHHTCCEEEESSC--CS---CTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHH
T ss_pred hHHHHHHHHCCCCEEEECCc--cC---CCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCcccccc
Confidence 12334455669999987644 11 12223 4678888888999999988999999999832
Q ss_pred -----CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh--CCceEEEEEecChhHHHHHH
Q 004136 177 -----NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLF 249 (771)
Q Consensus 177 -----~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~~~~~~~il 249 (771)
.... ....+.|++.+++.| +.+.....+.... .+ ...-...+.++.+ ..+++||. ++...+..++
T Consensus 213 ~~~~~~~~~--~~R~~Gf~~al~~~g-~~~~~~~~~~~~~--~~-~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~ 284 (366)
T 3h5t_A 213 LENAQYQVQ--RDRVRGAMEVFIEAG-IDPGTVPIMECWI--NN-RQHNFEVAKELLETHPDLTAVLC--TVDALAFGVL 284 (366)
T ss_dssp HHTCCCTTH--HHHHHHHHHHHHHHT-CCGGGSCEEEESS--CC-HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHH
T ss_pred ccccccchH--HHHHHHHHHHHHHCC-CCCCcceEEEcCC--CC-HHHHHHHHHHHHcCCCCCcEEEE--CCcHHHHHHH
Confidence 1122 445788999999988 6432111111011 01 1223334444433 25777666 6777788899
Q ss_pred HHHHHcCCCCC-CeEEEeeC
Q 004136 250 TEANRMGLVGK-DSVWIVTN 268 (771)
Q Consensus 250 ~~a~~~g~~~~-~~~~i~~~ 268 (771)
++++++|+..+ +...++.+
T Consensus 285 ~al~~~G~~vP~disvigfD 304 (366)
T 3h5t_A 285 EYLKSVGKSAPADLSLTGFD 304 (366)
T ss_dssp HHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHcCCCCCCceEEEEEC
Confidence 99999998644 34444443
No 158
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.73 E-value=0.0072 Score=62.31 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=93.9
Q ss_pred ccccchHHHHHHHHHH----CCCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeecc------------ceeeeecc
Q 004136 486 RYDGFSIELFRLVVDH----LNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGN------------RTEYVEFT 549 (771)
Q Consensus 486 ~~~G~~~~l~~~~a~~----l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~------------r~~~~~fs 549 (771)
.+..+...|-+.+.+. +|.+ +++.+. +...+.+..+.+|++|+++........ ..+.+.+.
T Consensus 44 ~~~~~~~~la~~l~~~~~~~~g~~--v~v~~~-~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~f~~~~~~~d~~~v 120 (327)
T 4ddd_A 44 VYYPIGGSICRFIASDYGKDNKII--CSISST-TGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEKMLPMDNLRML 120 (327)
T ss_dssp SHHHHHHHHHHHHHHHHGGGTSEE--EEEECC-CCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCGGGTTSCCCTTEEEE
T ss_pred HHHHHHHHHHHHHHhccCCCCCeE--EEEEec-CcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcCcccccCCCcchheh
Confidence 5677777888888887 6766 454443 346788899999999999876543211 12334444
Q ss_pred cceeeccEEEEEecCCCCCccccccCCCHHHHHHHHHHHHHHHHhhhhhccccCccCcCcccchHHHHHHHHHHHhhccC
Q 004136 550 QPYAESGFSMIVPAKQEESTWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSH 629 (771)
Q Consensus 550 ~p~~~~~~~~~v~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (771)
.+++.....+++++.++
T Consensus 121 ~~~~~~~~~lvv~~ds~--------------------------------------------------------------- 137 (327)
T 4ddd_A 121 ASLHKEYLTIVVKKSSN--------------------------------------------------------------- 137 (327)
T ss_dssp EEEEEEEEEEEEETTSS---------------------------------------------------------------
T ss_pred hccCCccEEEEEECCCC---------------------------------------------------------------
Confidence 56777777888877653
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHhhhCCceEEE-ecChHHHH----HHHHhcCC
Q 004136 630 RANIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSLKSGNLKVGC-VDDSFVKK----YLEEVLGF 704 (771)
Q Consensus 630 ~~~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL~~~~~~~g~-~~~s~~~~----~l~~~~~~ 704 (771)
|++++||. +.++++ ..++..+. +++. .+.
T Consensus 138 -------------------------------------------i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~-~Gi 171 (327)
T 4ddd_A 138 -------------------------------------------ISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGE-KGW 171 (327)
T ss_dssp -------------------------------------------CCSGGGGT--TSEEECCSTTSHHHHHHHHHHHH-HTC
T ss_pred -------------------------------------------CCCHHHhC--CCEEecCCCCccHHHHHHHHHHH-cCC
Confidence 89999998 778887 35554332 3333 444
Q ss_pred CCCCc--ccCCCCHHHHHHHHHcCCceEEEecc
Q 004136 705 RSGNI--VPFGNTEANYIQKFENNTIDSLFLER 735 (771)
Q Consensus 705 ~~~~~--~~~~~~~~~~~~~v~~~~~~a~i~~~ 735 (771)
....+ ..|.. ..+.+.+|..|++|+++...
T Consensus 172 ~~~~v~~v~~~g-~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 172 TKKDFSVMAELK-SSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp CGGGCSEEECCC-HHHHHHHHHTTSCSBEEEEE
T ss_pred ChHhcchhhcCC-HHHHHHHHHcCCCCEEEEcc
Confidence 43333 46777 89999999999999998754
No 159
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=96.50 E-value=0.0044 Score=53.28 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=58.9
Q ss_pred HHHhhhhhccccCccCcCcccchHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceeec
Q 004136 591 TMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVR 667 (771)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~ 667 (771)
.+.+++..|+..+ +....++.+++|+++.+++..| |+ .|.+..+|++...|.++++.+.++..+.+++.++..
T Consensus 43 ~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 43 GSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp HHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666776432 2234579999999999999988 55 578999999999999999999999999999988643
No 160
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=96.50 E-value=0.079 Score=53.88 Aligned_cols=70 Identities=13% Similarity=0.204 Sum_probs=48.1
Q ss_pred CCChhHhhh------CCceEEEec-ChHHH---HHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHH
Q 004136 673 VTDIQSLKS------GNLKVGCVD-DSFVK---KYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFL 742 (771)
Q Consensus 673 i~~~~dL~~------~~~~~g~~~-~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~ 742 (771)
++|++||.. ..+.+|... ++..+ ..+.+..+... ..+.|.. ..+.+.+|..|++|+++.+...+..++
T Consensus 127 ~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~-~~Vpy~G-~~~a~~al~~G~vD~~~~~~~~~~~~i 204 (314)
T 2dvz_A 127 AKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDI-VHVPYKG-SGPAVADAVGGQIELIFDNLPSSMPQI 204 (314)
T ss_dssp CSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCCC-EEEECSS-HHHHHHHHHHTSSSEEEEEHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCCe-EEcccCC-HHHHHHHHHcCCceEEEEcHHHHHHHH
Confidence 899999963 347888863 44433 23333334332 2357887 889999999999999999887766555
Q ss_pred Hh
Q 004136 743 DK 744 (771)
Q Consensus 743 ~~ 744 (771)
+.
T Consensus 205 ~~ 206 (314)
T 2dvz_A 205 QA 206 (314)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 161
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.38 E-value=0.064 Score=54.97 Aligned_cols=87 Identities=21% Similarity=0.195 Sum_probs=51.9
Q ss_pred CCChhHhhhCCceEEEec-ChHHHH---HHHHhcCCCC-CCcccCCCCHHHHHHHHHcC----CceEEEecchhHHHHHH
Q 004136 673 VTDIQSLKSGNLKVGCVD-DSFVKK---YLEEVLGFRS-GNIVPFGNTEANYIQKFENN----TIDSLFLERPYEKVFLD 743 (771)
Q Consensus 673 i~~~~dL~~~~~~~g~~~-~s~~~~---~l~~~~~~~~-~~~~~~~~~~~~~~~~v~~~----~~~a~i~~~~~~~~~~~ 743 (771)
|++++|| .+||+.. ++.... .+.+..+... .+++.+.. ..+.+.++.+| ++||++.+........+
T Consensus 112 i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~-~~~~~~al~~G~~~~~vDa~~~ep~~~~~~~~ 186 (321)
T 2x7q_A 112 VTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSN-FKNLRDSVNLKDGVEGSDAFMWEYFTSKKYYD 186 (321)
T ss_dssp CSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCS-HHHHHHHHTTCTTSCCCSEEEEEHHHHHHHHH
T ss_pred CCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCC-hHHHHHHHHcCCCccceEEEEecCccchhhcc
Confidence 8999999 5899975 554432 2322234332 34455666 88999999999 99998765444333332
Q ss_pred hcCCceeEee-eeee-ceEEEEEec
Q 004136 744 KYCKKYTAIN-TYRF-GGLGFVSNI 766 (771)
Q Consensus 744 ~~c~~l~~~~-~~~~-~~~g~~~~k 766 (771)
... ++.+. .... ...++++++
T Consensus 187 -~g~-~~~~~d~~~~~~~~~l~~~~ 209 (321)
T 2x7q_A 187 -NHE-IKQIDQIYTPWSSWVVATSS 209 (321)
T ss_dssp -TTS-EEEEEEEECSSCSEEEEEEH
T ss_pred -CCc-eEEccccCCCCceEEEEEcH
Confidence 222 55554 3322 234666665
No 162
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.20 E-value=0.0019 Score=53.73 Aligned_cols=74 Identities=14% Similarity=0.020 Sum_probs=59.5
Q ss_pred HHHHhhhhhccccCccCcCcccchHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceeec
Q 004136 590 YTMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVR 667 (771)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~ 667 (771)
+.+++++.+++..+ .....++.+++|+++.++...| ++ .|.+..+|++...|.++++.+.++..+.+++.++..
T Consensus 21 ~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 96 (103)
T 2k1e_A 21 EASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRR 96 (103)
T ss_dssp HHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGH
T ss_pred HHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566677777543 2223468899999999999998 55 578899999999999999999999999999988654
No 163
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=96.10 E-value=0.015 Score=52.17 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=60.1
Q ss_pred HHHhhhhhccccCccCcCcccchHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceeecc
Q 004136 591 TMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRR 668 (771)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~ 668 (771)
.+.+++.+++..+ +....++.+++|+++.+++..| ++ .|.+..+|++...|.++++.+.++.++.+++.++...
T Consensus 66 ~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~ 141 (155)
T 2a9h_A 66 GSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGRE 141 (155)
T ss_dssp HHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677776532 2233478999999999999988 55 5788999999999999999999999999999887544
Q ss_pred c
Q 004136 669 L 669 (771)
Q Consensus 669 ~ 669 (771)
.
T Consensus 142 ~ 142 (155)
T 2a9h_A 142 Q 142 (155)
T ss_dssp C
T ss_pred H
Confidence 3
No 164
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.83 E-value=0.021 Score=50.37 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=56.1
Q ss_pred HHhhhhhccccCccCcCcccchHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhccccccee
Q 004136 592 MFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLT 665 (771)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt 665 (771)
+.+++.+++..+ .....++.+++|+++.+++..| |+ .|.+..+|++...|.++++.+.++..+.+++.+.
T Consensus 23 a~~~~~~e~~~~----~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~ 94 (139)
T 3eff_K 23 SYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 94 (139)
T ss_dssp HHHHHHTTSSCT----TCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHhcCCC----CcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666432 2233468999999999999988 55 5788999999999999999999999999988874
No 165
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=95.62 E-value=0.042 Score=48.18 Aligned_cols=54 Identities=11% Similarity=0.259 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceee
Q 004136 613 QISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTV 666 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~ 666 (771)
++.+++|+++.+++..| |+ .|.+..+|++...|.++++.+.+...+.+++.+..
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~ 98 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRC 98 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999988 55 57899999999999999999999999999988854
No 166
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=95.55 E-value=0.055 Score=57.79 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=43.4
Q ss_pred hHhhhCCceEEEe-cChHHHHHHHH---hcCCCCC---CcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhc
Q 004136 677 QSLKSGNLKVGCV-DDSFVKKYLEE---VLGFRSG---NIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKY 745 (771)
Q Consensus 677 ~dL~~~~~~~g~~-~~s~~~~~l~~---~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~ 745 (771)
+||+ |.+||+. .++....+++. ..+.... +++.+ . ..+.+.++++|++|+++...+.......+.
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~-~~~~~~aL~~G~vDa~~~~eP~~~~~~~~g 222 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-P-PAQMVANVKVNAMESFCVGEPWPLQTVNQG 222 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-C-GGGHHHHHHTTSCSEEEEETTHHHHHHHHT
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-C-HHHHHHHHHcCCCCEEEeCCCHHHHHHHcC
Confidence 6666 8999996 56555433332 2344332 33333 3 668899999999999999888877666554
No 167
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=94.95 E-value=0.074 Score=55.52 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=44.6
Q ss_pred HHHHHHHHHHCCCcccEEEecCC--CChHHHHHHHhcccccEEEeeEeeeccceeeee-cc-ccee
Q 004136 492 IELFRLVVDHLNYDLPYEFVPHD--GVYDDLINGVYDKTYDAAVGDLTILGNRTEYVE-FT-QPYA 553 (771)
Q Consensus 492 ~~l~~~~a~~l~f~~~~~~~~~~--~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~-fs-~p~~ 553 (771)
-.+.+.+.++.|-++++++.+.. |+..++++.|..|.+||++.+......+...+. |+ .||.
T Consensus 53 ~~fa~~v~e~t~G~v~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~ 118 (361)
T 2zzv_A 53 QKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALG 118 (361)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTS
T ss_pred HHHHHHHHHhcCCeEEEEEeCCCcccCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCC
Confidence 35778888888877767776642 578899999999999999876665555544443 32 5654
No 168
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=94.92 E-value=0.15 Score=51.77 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=40.4
Q ss_pred CCChhHhhhCCceEEE-ecChHHHHH----HHHhcCCCCCCc--ccCCCCHHHHHHHHHcCCceEEEecc
Q 004136 673 VTDIQSLKSGNLKVGC-VDDSFVKKY----LEEVLGFRSGNI--VPFGNTEANYIQKFENNTIDSLFLER 735 (771)
Q Consensus 673 i~~~~dL~~~~~~~g~-~~~s~~~~~----l~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~a~i~~~ 735 (771)
+++++||. +.++++ ..++..... ++. .+.....+ ..+.+ ..+.+.++..|++|+.+...
T Consensus 123 i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~-~G~~~~~v~~~~~~~-~~~~~~al~~G~vda~~~~~ 188 (314)
T 1us5_A 123 IRTVADLK--GKRVVVGDVGSGTEQNARQILEA-YGLTFDDLGQAIRVS-ASQGIQLMQDKRADALFYTV 188 (314)
T ss_dssp CSSGGGGT--TSEEECCCTTCHHHHHHHHHHHH-TTCCGGGSSEEECCC-HHHHHHHHHTTSCSEEEEEE
T ss_pred CCcHHHhC--CCEeecCCCCchHHHHHHHHHHH-cCCCHHHcCceecCC-HHHHHHHHHcCCccEEEEcc
Confidence 88999998 678877 455554433 333 33333333 24566 88999999999999999764
No 169
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=94.63 E-value=0.056 Score=44.08 Aligned_cols=58 Identities=14% Similarity=0.282 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccC
Q 004136 613 QISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLE 670 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~ 670 (771)
++.+++|+++.++...| ++ .|.+..+|++...|.++++.+.+...+.+++.+..++..
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~~ 91 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 58899999999999998 54 578999999999999999999999999999888765543
No 170
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=94.56 E-value=0.15 Score=39.90 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccce
Q 004136 613 QISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLL 664 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~l 664 (771)
++.+++|+++.++...| ++ .|.+..+|++...+.++++.+.+...+.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999998 54 578999999999999999999999999887754
No 171
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=94.06 E-value=0.14 Score=43.05 Aligned_cols=55 Identities=15% Similarity=0.298 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceeec
Q 004136 613 QISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVR 667 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~ 667 (771)
++.+++|+++.++...| ++ .|.+..+|++...|.++++.+.++..+.+++.++..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999988 55 578899999999999999999999999998877543
No 172
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=93.93 E-value=0.58 Score=45.33 Aligned_cols=134 Identities=17% Similarity=0.085 Sum_probs=87.3
Q ss_pred HHHHHHHHhcCCeEEEEcCCchHhH--------HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHH
Q 004136 86 ATAAQELINKEKVKVIAGMETWEET--------AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKC 157 (771)
Q Consensus 86 ~~~~~~li~~~~v~aviGp~~s~~~--------~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a 157 (771)
.+++.+|. ..++.+|+-+-.+... .....+.+..++|+++. +.+
T Consensus 56 ~~aa~~L~-~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~---------------------------~~A 107 (240)
T 3ixl_A 56 VDHARRLQ-KQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM---------------------------STA 107 (240)
T ss_dssp HHHHHHHH-HTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH---------------------------HHH
T ss_pred HHHHHHhc-cCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH---------------------------HHH
Confidence 34455565 6799988865444333 23344555567887742 456
Q ss_pred HHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCC---CCchHHHHHHHHH-h-hhCCc
Q 004136 158 IADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSI---SDPKEAVRGELKK-V-QDKQS 232 (771)
Q Consensus 158 ~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~---~d~~~~~~~~l~~-l-~~~~~ 232 (771)
+++.+++.+.++|+++.. |. ....+.+++.+++.| +++............ .-+...+.+.+++ + ...++
T Consensus 108 ~~~al~~~g~~rvglltp---y~--~~~~~~~~~~l~~~G-iev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a 181 (240)
T 3ixl_A 108 VLNGLRALGVRRVALATA---YI--DDVNERLAAFLAEES-LVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDS 181 (240)
T ss_dssp HHHHHHHTTCSEEEEEES---SC--HHHHHHHHHHHHHTT-CEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHhCCCEEEEEeC---Ch--HHHHHHHHHHHHHCC-CEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCC
Confidence 777788889999999974 76 666788899999999 988765443322100 0112467777888 7 67799
Q ss_pred eEEEEEecChhHHHHHHHHHHH
Q 004136 233 RVFIVLQASLDMTIHLFTEANR 254 (771)
Q Consensus 233 ~vIv~~~~~~~~~~~il~~a~~ 254 (771)
|.||+ .|..-....++.++++
T Consensus 182 daivL-~CT~l~~l~~i~~le~ 202 (240)
T 3ixl_A 182 DGILL-SSGGLLTLDAIPEVER 202 (240)
T ss_dssp SEEEE-ECTTSCCTTHHHHHHH
T ss_pred CEEEE-eCCCCchhhhHHHHHH
Confidence 99999 7776555445554443
No 173
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=93.51 E-value=0.24 Score=52.84 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=44.9
Q ss_pred hhHh-hhCCc--eEEEe-cChHHHH----HHHHhcCCCCC-Cc--ccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHh
Q 004136 676 IQSL-KSGNL--KVGCV-DDSFVKK----YLEEVLGFRSG-NI--VPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDK 744 (771)
Q Consensus 676 ~~dL-~~~~~--~~g~~-~~s~~~~----~l~~~~~~~~~-~~--~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~ 744 (771)
++|| ++.|. +||+. .++.... +|+. .+.... .+ +.+ . ..+.+.++++|++||++...+.......+
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~-~Gl~p~~DV~~v~~-~-~~~~~~aL~~G~iDa~~~~eP~~~~a~~~ 229 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAA-GGVDPDTDIDLLAV-P-PAETVQGMRNGTMDAFSTGDPWPYRIVTE 229 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHH-TTCCTTTTSEEEEC-C-HHHHHHHHHHTCCCEEEEETTHHHHHHHT
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHh-cCCCCCCcEEEEEC-C-hHHHHHHHHcCCccEEEeccchHHHHHHC
Confidence 6888 64455 99996 5655433 3333 454433 23 233 4 78899999999999999988887665554
Q ss_pred c
Q 004136 745 Y 745 (771)
Q Consensus 745 ~ 745 (771)
.
T Consensus 230 g 230 (429)
T 2i49_A 230 N 230 (429)
T ss_dssp T
T ss_pred C
Confidence 3
No 174
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=93.50 E-value=3.7 Score=38.13 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=49.6
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
..+-.+++..+.++. +.+ +++... ....+...|.+|++|+++....... ..+. ..++....+.+++++..+
T Consensus 16 ~~~l~~~l~~~~~~~P~i~--i~i~~~--~~~~~~~~l~~g~~Dl~i~~~~~~~---~~~~-~~~l~~~~~~~v~~~~~p 87 (219)
T 3jv9_A 16 PYLLPKLIVSLRRTAPKMP--LMLEEN--YTHTLTESLKRGDVDAIIVAEPFQE---PGIV-TEPLYDEPFFVIVPKGHS 87 (219)
T ss_dssp HHHHHHHHHHHHHHSTTCC--EEEEEE--CHHHHHHHHHHTSSSEEEEESSCCC---TTEE-EEEEEEEEEEEEEETTCG
T ss_pred HHHHHHHHHHHHHHCCCcE--EEEEeC--CcHHHHHHHHcCCCCEEEEcCCCCC---CCee-EEEeeeceEEEEEeCCCC
Confidence 456778888888877 555 444332 4678999999999999987543322 2232 367888899999987753
No 175
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=93.28 E-value=0.47 Score=47.93 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=37.5
Q ss_pred HHHHHHHHHHCCCcccEEEecCC--CChHHHHHHHhcccccEEEeeEeeecc
Q 004136 492 IELFRLVVDHLNYDLPYEFVPHD--GVYDDLINGVYDKTYDAAVGDLTILGN 541 (771)
Q Consensus 492 ~~l~~~~a~~l~f~~~~~~~~~~--~~~~~~i~~l~~~~~D~~~~~~~~t~~ 541 (771)
-.+.+.+.++.|-++++++.+.. |+-..+++.++.|.+||+..+......
T Consensus 21 ~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~ 72 (301)
T 2pfy_A 21 RQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSALGN 72 (301)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGGTT
T ss_pred HHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhhhhc
Confidence 35677888888888888877642 456789999999999998765444333
No 176
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=92.98 E-value=0.18 Score=51.24 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=52.6
Q ss_pred cchHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccC
Q 004136 611 KDQISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLE 670 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~ 670 (771)
..++..++|+++.+++..| |. .|.+..+|++..++.++++++.++-++.+++.++.+...
T Consensus 94 ~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~r 155 (333)
T 1p7b_A 94 PPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAK 155 (333)
T ss_dssp SSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred CCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999988 44 578899999999999999999999999999999876544
No 177
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=92.97 E-value=0.24 Score=51.74 Aligned_cols=51 Identities=6% Similarity=-0.049 Sum_probs=38.1
Q ss_pred HHHHHHHHHCCCcccEEEecCC--CChHHHHHHHhcccccEEEeeEeeeccce
Q 004136 493 ELFRLVVDHLNYDLPYEFVPHD--GVYDDLINGVYDKTYDAAVGDLTILGNRT 543 (771)
Q Consensus 493 ~l~~~~a~~l~f~~~~~~~~~~--~~~~~~i~~l~~~~~D~~~~~~~~t~~r~ 543 (771)
.+.+.+.++.|-++++++.+.. |+...+++.+..|.+||+..+......+.
T Consensus 53 ~fa~~v~e~s~G~v~i~~~~~g~Lg~~~~~~eav~~G~iD~~~~~~~~~~~~~ 105 (365)
T 2hzl_A 53 VLSKMLSEATDGNFQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYYYWGKD 105 (365)
T ss_dssp HHHHHHHHHTTTSSEEEEECTTTSSCGGGHHHHHHTTSSSEEEECGGGGTTTC
T ss_pred HHHHHHHHhcCCeEEEEEecCCcccCHHHHHHHHHcCccceeecchhhhcccC
Confidence 4778888888877778777642 46789999999999999976554444333
No 178
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=92.83 E-value=0.36 Score=42.85 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhccccccee
Q 004136 613 QISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLT 665 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt 665 (771)
++.+++|+++.++...| |+ .|.+..+|++...|.++++.+.+...+++++.+.
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~ 106 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQ 106 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999998 55 5689999999999999999999999998877554
No 179
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=92.69 E-value=0.3 Score=49.03 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=51.7
Q ss_pred ccchHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceeecc
Q 004136 610 LKDQISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRR 668 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~ 668 (771)
...++..++|+++.+++..| |. .|.+..+|++..++.++++++.+..++.+.+.++.+.
T Consensus 79 ~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 79 RPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34579999999999999988 54 5788999999999999999999999999999887654
No 180
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=92.68 E-value=0.42 Score=53.16 Aligned_cols=127 Identities=8% Similarity=0.033 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcc-cccceeecc----cCCC-CCChhHhhhCCc
Q 004136 613 QISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTAS-LSSLLTVRR----LEPN-VTDIQSLKSGNL 684 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~-L~s~lt~~~----~~~~-i~~~~dL~~~~~ 684 (771)
++..++|+++.+++..| +. .|.+..+|++..+|.++++.+.++..+. ++++++.+. .... .....+. ...
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 128 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDD--TRG 128 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTT--CCS
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc--cCC
Confidence 68999999999999988 54 4688899999999999999888877776 444443221 1111 1111111 123
Q ss_pred eEEEecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcC-CceEEEecchhHHHHH
Q 004136 685 KVGCVDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENN-TIDSLFLERPYEKVFL 742 (771)
Q Consensus 685 ~~g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~a~i~~~~~~~~~~ 742 (771)
.+.+...+-.-..+-+........+..... .++.++.+.+. +..++.+|...-+.+.
T Consensus 129 hviI~G~g~~g~~la~~L~~~~~~vvvid~-~~~~~~~~~~~~~~~~i~Gd~~~~~~L~ 186 (565)
T 4gx0_A 129 HILIFGIDPITRTLIRKLESRNHLFVVVTD-NYDQALHLEEQEGFKVVYGSPTDAHVLA 186 (565)
T ss_dssp CEEEESCCHHHHHHHHHTTTTTCCEEEEES-CHHHHHHHHHSCSSEEEESCTTCHHHHH
T ss_pred eEEEECCChHHHHHHHHHHHCCCCEEEEEC-CHHHHHHHHHhcCCeEEEeCCCCHHHHH
Confidence 344444322222222222222334444555 66677777766 6777777776655433
No 181
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=92.58 E-value=0.58 Score=48.21 Aligned_cols=64 Identities=27% Similarity=0.310 Sum_probs=41.4
Q ss_pred CCChhHhhhCCceEEEecChHHHHHHHH---hcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHH
Q 004136 673 VTDIQSLKSGNLKVGCVDDSFVKKYLEE---VLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKV 740 (771)
Q Consensus 673 i~~~~dL~~~~~~~g~~~~s~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~ 740 (771)
+++++||. |.++|+..+ ....++.. ..+.....+..... ..+...++.+|++||.+.-.+....
T Consensus 103 ~~~~~dLk--GK~ig~~~~-~~~~~l~~~L~~~Gl~~~dv~~v~~-~~~~~~al~~G~vDa~~~~~p~~~~ 169 (342)
T 4esw_A 103 TSDFQSLK--GKRIGYVGE-FGKIQVDELTKHYGMTPDDYVAVRC-GMNVAKYILEGTIDCGIGIECIQQV 169 (342)
T ss_dssp CSSGGGGT--TCEEEESSS-HHHHHHHHHHGGGTCCGGGSEEEEC-GGGHHHHHHHTSSSEEEEETTTHHH
T ss_pred cCCHHHhC--CCEEEecCC-chHHHHHHHHHHcCCChhheEEecC-CHHHHHHHHcCCCCEEEEeccchHH
Confidence 67899999 999998643 33333322 24444444443333 3355688999999999987766544
No 182
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=92.47 E-value=0.54 Score=47.46 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=41.6
Q ss_pred CCCCChhHhhhCCceEEEecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchh
Q 004136 671 PNVTDIQSLKSGNLKVGCVDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPY 737 (771)
Q Consensus 671 ~~i~~~~dL~~~~~~~g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~ 737 (771)
.+|++++||+ |+|+.+. ++....+++. .+- +.... ...|.+.+|++|.+|+.......
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~~~-lGa---~pv~~--~~~E~y~ALq~G~vDg~~~~~~~ 185 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIAEL-VGA---QPVTV--QQAELAQAMATGVIDSYMSSGST 185 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHHHH-HTC---EEEEC--CGGGHHHHHHTTSCSEEEECHHH
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHHHH-cCC---cceec--CHHHHHHHHhcCeeeEEecCccc
Confidence 5799999999 9999886 5555566665 332 22222 37899999999999999654433
No 183
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=91.55 E-value=0.4 Score=45.97 Aligned_cols=71 Identities=11% Similarity=0.211 Sum_probs=55.5
Q ss_pred HHhhhhhccccCccCcCcccchHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceee
Q 004136 592 MFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTV 666 (771)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~ 666 (771)
+.+++..++..+ +....++.+++|+++.+++..| |+ .|.+..+|++...+.++++.+.+...+.+++.+..
T Consensus 148 ~~~~~~~e~~~~----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 148 AFAIYIVEYPDP----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHTTSSST----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCc----CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555221 2223478999999999999988 54 57899999999999999999999999999887753
No 184
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=91.07 E-value=0.36 Score=48.06 Aligned_cols=57 Identities=14% Similarity=-0.004 Sum_probs=36.8
Q ss_pred hHhhhCCceEEEe-cChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecc-hhHH
Q 004136 677 QSLKSGNLKVGCV-DDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLER-PYEK 739 (771)
Q Consensus 677 ~dL~~~~~~~g~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~-~~~~ 739 (771)
+||+ |.+||+. .++....+++.. ....++. +.. ..+.+.++.+|++||.+... +.+.
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~--l~~~~~~-~~~-~~~~~~al~~G~vDa~~~~~~~~~~ 157 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLA--VEDFEPV-EMP-FDRIIQAVLDEEVDAGLLIHEGQIT 157 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHH--CSSCEEE-ECC-GGGHHHHHHTTSSSEEEECSGGGGT
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHH--hccCceE-ecC-HHHHHHHHHcCCCCEEEEechHHhH
Confidence 6777 8999996 445444445543 2222333 334 67899999999999988554 4443
No 185
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=90.80 E-value=2.8 Score=39.10 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=49.1
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
..+-.+++..+.++. +.+ +++.. +....++..|.+|++|+++....... ..+. ..++....+.+++++..+
T Consensus 20 ~~~l~~~l~~f~~~~P~i~--i~i~~--~~~~~~~~~l~~g~~Di~i~~~~~~~---~~~~-~~~l~~~~~~~v~~~~~p 91 (222)
T 4ab5_A 20 FDWLMPAMGEFRPMWPQVE--LDIVS--GFQADPVGLLLQHRADLAIVSEAEKQ---NGIS-FQPLFAYEMVGICAPDHP 91 (222)
T ss_dssp HHHHHHHHHHHHHHSTTEE--EEEEC--CCCSCTHHHHHTTSCSEEEESCCCCC---TTEE-EEEEEEEEEEEEECTTSG
T ss_pred HHHHHHHHHHHHHHCCCcE--EEEec--CCHHHHHHHHHcCCcCEEEecCCCCc---CCeE-EEEeecCcEEEEecCCCh
Confidence 356678888888887 555 44443 23466899999999999987443322 2233 367888899999887763
No 186
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=90.59 E-value=2.8 Score=39.57 Aligned_cols=71 Identities=11% Similarity=-0.001 Sum_probs=50.3
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
..+-.+++..+.++. +.+ +.+.. +....++..|.+|++|+++....... ..+. +.++....+.+++++..+
T Consensus 23 ~~~l~~~l~~~~~~~P~v~--i~~~~--~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~hp 94 (232)
T 3ho7_A 23 PYLLPRVFPIWKKELAGLE--IHVSE--MQTSRCLASLLSGEIDMAIIASKAET---EGLE-DDLLYYEEFLGYVSRCEP 94 (232)
T ss_dssp HHHHHHHHHHHHHHSTTEE--EEEEE--CCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEECTTSG
T ss_pred hhhhHHHHHHHHHHCCCcE--EEEEe--CCHHHHHHHHHcCCCCEEEEcCCCCC---CCeE-EEEecccCEEEEEcCCCc
Confidence 457778888888887 444 44444 35678999999999999987544332 2232 367888899999877653
No 187
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=90.37 E-value=0.76 Score=46.44 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccC
Q 004136 613 QISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLE 670 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~ 670 (771)
++.+++|+++.+++..| |. .|.+..+|++..++.++++++.+.-++.+++.++.+...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r 137 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKR 137 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999988 44 578999999999999999999999999999998876443
No 188
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=90.26 E-value=0.014 Score=53.19 Aligned_cols=55 Identities=16% Similarity=0.121 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceee
Q 004136 612 DQISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTV 666 (771)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~ 666 (771)
.++.+++|+++.+++..| |+ .|.+..+|++..+|.++++++.++..+.+++.++.
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999988 55 57899999999999999999999999999999863
No 189
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=89.96 E-value=0.77 Score=43.61 Aligned_cols=74 Identities=8% Similarity=0.007 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhccc-ccEEEeeEeeecc---ceeeee--cccceeeccEEEEEe
Q 004136 489 GFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKT-YDAAVGDLTILGN---RTEYVE--FTQPYAESGFSMIVP 562 (771)
Q Consensus 489 G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~-~D~~~~~~~~t~~---r~~~~~--fs~p~~~~~~~~~v~ 562 (771)
.+.-++++.+.++-|.++++.. ++-..++..+.+|+ +|+++..-....+ +...+. -..|+....+.++++
T Consensus 12 ~~l~~~~~~F~~~p~i~v~~~~----~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~ 87 (231)
T 1atg_A 12 GTLEQLAGQFAKQTGHAVVISS----GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLWSA 87 (231)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEE----ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEEEES
T ss_pred HHHHHHHHHHHhccCCeEEEEE----CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEEEEc
Confidence 3455677888777787755542 24577899999998 9998763211111 111111 246788888888887
Q ss_pred cCCC
Q 004136 563 AKQE 566 (771)
Q Consensus 563 ~~~~ 566 (771)
+..+
T Consensus 88 ~~~~ 91 (231)
T 1atg_A 88 KPGL 91 (231)
T ss_dssp STTT
T ss_pred CCCC
Confidence 7653
No 190
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=89.42 E-value=1.3 Score=43.97 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=42.1
Q ss_pred CCChhHhhhC--CceEEEecChH-----HHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHH
Q 004136 673 VTDIQSLKSG--NLKVGCVDDSF-----VKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEK 739 (771)
Q Consensus 673 i~~~~dL~~~--~~~~g~~~~s~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~ 739 (771)
|+|+.||+.. .+++|+..+.. ....++. ++.....+... + ..+..+++++|++|++..-.+...
T Consensus 125 i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~-yGl~~~~~~~~-~-~~~~~~Al~~g~vd~~~~~~p~~~ 195 (275)
T 1sw5_A 125 VEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKV-YGFEFKEVKQM-E-PTLMYEAIKNKQVDVIPAYTTDSR 195 (275)
T ss_dssp CCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHH-HTCCCSEEEEC-C-GGGHHHHHHTTSCSEEEEETTCHH
T ss_pred CCcHHHHHhhhcceEeccCcccccccchHHHHHHh-cCCCcccccCC-C-HHHHHHHHHcCCCeEEEEeCCCcc
Confidence 9999999843 34666643321 1123333 55544445444 4 667899999999999998887765
No 191
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=89.26 E-value=0.22 Score=51.35 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceeecccC
Q 004136 613 QISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLE 670 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~ 670 (771)
++.+++|+++.+++..| +. .|.+..+|++..+|.++++++.++..+.+++.++.....
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQM 104 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC------
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999988 44 578899999999999999999999999999998876544
No 192
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=89.24 E-value=1.4 Score=42.44 Aligned_cols=76 Identities=8% Similarity=0.056 Sum_probs=48.1
Q ss_pred cccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhccc-ccEEEeeEeeecc---ceeeee--cccceeeccEEEE
Q 004136 487 YDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKT-YDAAVGDLTILGN---RTEYVE--FTQPYAESGFSMI 560 (771)
Q Consensus 487 ~~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~-~D~~~~~~~~t~~---r~~~~~--fs~p~~~~~~~~~ 560 (771)
+....-+|++.+.++-|.++++.. ++-..++.++.+|. +|+.++.-.-..+ ....+. -..+|....++++
T Consensus 17 ~~~~~~~l~~~Fe~~~gi~V~~~~----~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lvl~ 92 (237)
T 3r26_A 17 LTNAMQDIATQFKKEKGVDVVSSF----ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVV 92 (237)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEE----ECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEE
T ss_pred hHHHHHHHHHHHHhccCCeEEEEE----CCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEEEE
Confidence 334445788888888888866543 23456888888876 9998874211111 112222 2357888899999
Q ss_pred EecCCC
Q 004136 561 VPAKQE 566 (771)
Q Consensus 561 v~~~~~ 566 (771)
+++...
T Consensus 93 ~~~~~~ 98 (237)
T 3r26_A 93 APKASV 98 (237)
T ss_dssp EESSCC
T ss_pred EeCCCC
Confidence 988753
No 193
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=89.17 E-value=0.64 Score=48.17 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=56.8
Q ss_pred HHHhhhhhccccCccCcCcccchHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceee
Q 004136 591 TMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTV 666 (771)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~ 666 (771)
.+++.+.+++..+++ ...++.+++|+++.+++..| |. .|.+..+|++...+.++++++.++..+.+++.+..
T Consensus 143 ~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 143 VALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp HHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666643322 12368899999999999988 44 57899999999999999999999999999887764
No 194
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=89.15 E-value=6.7 Score=37.20 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=50.2
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
..+-.+++..+.++. +.+ +.+.. +....++..|.+|++|+++..... ....+. +.++....+.+++++..+
T Consensus 31 ~~~l~~~l~~f~~~~P~i~--l~~~~--~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~~~-~~~l~~~~~~~v~~~~hp 102 (241)
T 3oxn_A 31 QTILPFALPRIYQEAPNVS--FNFLP--LQHDRLSDQLTYEGADLAICRPTG---PVEPLR-SEILGRVGVLCLLSKQHP 102 (241)
T ss_dssp HHTHHHHHHHHHHHCTTCE--EEEEE--CCGGGHHHHHHTSCCSEEEECCSS---CCTTEE-EEEEECCCEEEEEETTSG
T ss_pred HHHHHHHHHHHHHHCCCCE--EEEEE--CCcccHHHHHHcCCCCEEEecCCC---CCccce-eEEeecccEEEEEeCCCC
Confidence 456778899998887 556 44444 246789999999999999874322 222333 367888899999987764
No 195
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=88.68 E-value=4.5 Score=41.63 Aligned_cols=89 Identities=20% Similarity=0.200 Sum_probs=68.9
Q ss_pred EEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHHHH
Q 004136 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (771)
Q Consensus 35 I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~v~ 114 (771)
=+||++.....+.-.+...|+..++++.|-+ .++.+.+..+-.|+..+.+.+..|+ ++++.+|+...... .+.
T Consensus 150 ~kIGfVgg~~~p~v~~~~~GF~~G~k~~np~---i~v~~~~~g~~~d~~kg~~~a~~l~-~~G~DvIf~~~d~~---Gv~ 222 (356)
T 3s99_A 150 GIAGYIGSVPVPEVVQGINSFMLGAQSVNPD---FRVKVIWVNSWFDPGKEADAAKALI-DQGVDIITQHTDST---AAI 222 (356)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHTTCTT---CEEEEEECSSSCCHHHHHHHHHHHH-HTTCSEEEESSSSS---HHH
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCCChHHHHHHHHHHH-hCCCcEEEECCCch---HHH
Confidence 4689998776444456788999999988754 6777777776689999999999999 67999998755443 455
Q ss_pred HhhccCCccEEeecCC
Q 004136 115 EIASRVQVPILSFAAP 130 (771)
Q Consensus 115 ~~~~~~~iP~Is~~a~ 130 (771)
..+++.++.+|.....
T Consensus 223 ~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 223 QVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHTTCEEEEEESC
T ss_pred HHHHHcCCEEEEEcCc
Confidence 6677789999988766
No 196
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=88.06 E-value=3.4 Score=42.03 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=55.1
Q ss_pred CCCCCChhHhhhCCceEEEecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHH-HHHhcCCc
Q 004136 670 EPNVTDIQSLKSGNLKVGCVDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKV-FLDKYCKK 748 (771)
Q Consensus 670 ~~~i~~~~dL~~~~~~~g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~-~~~~~c~~ 748 (771)
..+|++++||+ |+|+.+..+......++. .+- ....-...|.+.+|++|.+|+.....+.+.. -..+..+.
T Consensus 147 ~~pI~s~~DLk--G~KiRv~~~~~~~~~~~a-lGa-----~pv~m~~~Evy~ALq~G~VDg~~~p~~~~~~~~~~ev~ky 218 (327)
T 2hpg_A 147 NKPIRKPEDLN--GLRIRTPGAPAWQESIRS-LGA-----IPVAVNFGEIYTAVQTRAVDGAELTYANVYNGGLYEVLKY 218 (327)
T ss_dssp SSCCSSGGGGT--TCEEECCSSHHHHHHHHH-HTS-----EEECCCGGGHHHHHHTTSCSEEEECHHHHHHTTGGGTCCE
T ss_pred CCCCCCHHHHC--CCEEEeCCCHHHHHHHHH-cCC-----EeeecCHHHHHHHHHcCCeeEEECCHHHHHHcChhhhccE
Confidence 35799999999 999987755555566666 342 2222247899999999999999986555421 11233454
Q ss_pred eeEeeeeeeceEEEEEec
Q 004136 749 YTAINTYRFGGLGFVSNI 766 (771)
Q Consensus 749 l~~~~~~~~~~~g~~~~k 766 (771)
+...+-. .....+++++
T Consensus 219 ~~~~~~~-~~~~~~~~n~ 235 (327)
T 2hpg_A 219 MSETGHF-LLINFEIVSA 235 (327)
T ss_dssp EEEEEEE-EEEEEEEEEH
T ss_pred EEecCcc-hhceEEEEeH
Confidence 4444421 2345566654
No 197
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=87.94 E-value=9.5 Score=38.43 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=83.3
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHHHHH
Q 004136 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (771)
Q Consensus 36 ~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~v~~ 115 (771)
+||++.....+.......|++.++++.|-. .++..++..+-.++..+.+.+.+|+ ++++.+|+..... .+..+..
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~a~~ll-~~~~daI~~~~d~-~a~Gv~~ 205 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDPD---IQVVVEVANTFSDPQKGQALAAKLY-DSGVNVIFQVAGG-TGNGVIK 205 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCTT---CEEEEEECSCSSCHHHHHHHHHHHH-HTTCCEEEEECGG-GHHHHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCCC---CEEEEEEccCccCHHHHHHHHHHHH-HCCCcEEEECCCC-CchHHHH
Confidence 789887665444567789999999988643 4555554444457888999999999 5678898864433 3444444
Q ss_pred hhcc-----CCccEEeecCCCCCCCccC---CCCceEEEeecCcHHHHHHHHHHHHHcCCe
Q 004136 116 IASR-----VQVPILSFAAPAVTPLSMS---RRWPYLIRMASNDSEQMKCIADLARKYNWR 168 (771)
Q Consensus 116 ~~~~-----~~iP~Is~~a~~~~~~l~~---~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~ 168 (771)
.+++ .++-+|++... ...... ...|.+..+..+-...+...++.+..-.|+
T Consensus 206 a~~e~g~~P~dv~viG~D~~--~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 206 EARDRRLNGQDVWVIGVDRD--QYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHTTCCCEEEEEESC--CGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHhhhhccCCcEEEEEecc--hhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 4444 67888888755 222210 034677777777777888777777665554
No 198
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=86.77 E-value=1 Score=46.74 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=20.2
Q ss_pred HHHHHHcCCceEEEecchhHHHHHH
Q 004136 719 YIQKFENNTIDSLFLERPYEKVFLD 743 (771)
Q Consensus 719 ~~~~v~~~~~~a~i~~~~~~~~~~~ 743 (771)
...++.+|++||++...+......+
T Consensus 210 ~~~aL~~G~vDA~~~~~p~~~~~~~ 234 (365)
T 2de3_A 210 QAAVLASGDVDALYSWLPWAGELQA 234 (365)
T ss_dssp HHHHHHSSSCSEEEEEHHHHHHHHH
T ss_pred HHHHHhCCCcCEEEEcchhHHHHHh
Confidence 6899999999999998877655433
No 199
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=86.76 E-value=3.7 Score=39.97 Aligned_cols=75 Identities=8% Similarity=-0.007 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhccc-ccEEEeeEeeecc---ceeeee--cccceeeccEEEEE
Q 004136 488 DGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKT-YDAAVGDLTILGN---RTEYVE--FTQPYAESGFSMIV 561 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~-~D~~~~~~~~t~~---r~~~~~--fs~p~~~~~~~~~v 561 (771)
....-+|++.+.++.|.++++.. +.-..++.++.+|. +|+.++.-.-..+ +...+. -..+|....+++++
T Consensus 34 ~~~~~~l~~~Fe~~~gi~V~~~~----~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~~ 109 (253)
T 3gzg_A 34 KESMDEAATAYEKATGTPVRVSY----AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLVA 109 (253)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEE----ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEE----CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEEE
Confidence 34445788888888898866543 23466888888876 9998874211111 112222 12467778899999
Q ss_pred ecCCC
Q 004136 562 PAKQE 566 (771)
Q Consensus 562 ~~~~~ 566 (771)
++...
T Consensus 110 ~~~~~ 114 (253)
T 3gzg_A 110 PASSK 114 (253)
T ss_dssp ETTCC
T ss_pred ECCCC
Confidence 88763
No 200
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=86.03 E-value=3.7 Score=39.99 Aligned_cols=45 Identities=13% Similarity=0.037 Sum_probs=33.7
Q ss_pred cchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEeeEe
Q 004136 489 GFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLT 537 (771)
Q Consensus 489 G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~ 537 (771)
-+..+|+..+-+.+|+++++. + +.-.-+...|.+|++|+......
T Consensus 15 ~i~~~i~~~~Le~~G~~Ve~~--~--~~~~~~~~al~~G~iD~~~e~w~ 59 (256)
T 3l6g_A 15 VASINVLTQAMKEHGFDVKTT--A--LDNAVAWQTVANGQADGMVSAWL 59 (256)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--E--CCHHHHHHHHHTTSSSEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEE--E--CChHHHHHHHHCCCCeEEEcccC
Confidence 466778888888889886664 3 23466899999999999876443
No 201
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=84.79 E-value=12 Score=34.82 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=50.2
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
..+-.+++..+.++. +.+ +++.. ++...+++.|.+|++|+++.... .....+.+ .|+....+.+++++..+
T Consensus 20 ~~~lp~~l~~f~~~~P~v~--l~l~~--~~~~~l~~~L~~g~iDl~i~~~~---~~~~~l~~-~~l~~~~~~~v~~~~hp 91 (218)
T 2y7p_A 20 MYFMPPLMEALAQRAPHIQ--ISTLR--PNAGNLKEDMESGAVDLALGLLP---ELQTGFFQ-RRLFRHRYVCMFRKDHP 91 (218)
T ss_dssp HHHHHHHHHHHHHHCTTCE--EEEEC--CCTTTHHHHHHHTSSCEEEECCT---TCCTTEEE-EEEEEECEEEEEETTCS
T ss_pred HHHHHHHHHHHHHHCCCCE--EEEEe--CCcccHHHHHhCCCceEEEecCC---CCCcceeE-EEeeeccEEEEEcCCCC
Confidence 357778889988887 555 55444 34567999999999999986322 11223433 58889999999988764
No 202
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=84.49 E-value=2.1 Score=46.64 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhccccccee
Q 004136 610 LKDQISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLT 665 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt 665 (771)
...++..++|+++.+++..| +. .|.+..+|++..++.++++++++++.|.+.+-+.
T Consensus 372 ~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~ 429 (514)
T 2r9r_B 372 QFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 429 (514)
T ss_dssp SCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999987 44 5688899999999999999999999998876554
No 203
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=84.48 E-value=3.4 Score=41.39 Aligned_cols=64 Identities=9% Similarity=0.094 Sum_probs=39.9
Q ss_pred CCChhHhhh-----CCceEEEecChHHHHH----HH-HhcCCCCCCcccCCCCH----HHHHHHHHcCCceEEEecchhH
Q 004136 673 VTDIQSLKS-----GNLKVGCVDDSFVKKY----LE-EVLGFRSGNIVPFGNTE----ANYIQKFENNTIDSLFLERPYE 738 (771)
Q Consensus 673 i~~~~dL~~-----~~~~~g~~~~s~~~~~----l~-~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~a~i~~~~~~ 738 (771)
|+|++||++ .+..+|+..|+....+ |+ +..+.. .+.....+. .+..+++++|+.+++..-.+..
T Consensus 105 I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~--d~~~v~~~~~~~~a~~~~A~~~g~~~v~~~w~p~~ 182 (298)
T 2rin_A 105 IKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLK--GFEVVESSEQGMLAQVARAEKSGDPIVFLGWEPHP 182 (298)
T ss_dssp CCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCT--TCEEECCCHHHHHHHHHHHHHTTCCCEEEEEESST
T ss_pred CCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCC--CceeccCCHHHHHHHHHHHHHCCCCEEEEEeccCc
Confidence 899999963 2678888777665443 33 133442 233233312 2346778899999988877774
No 204
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=84.47 E-value=6.6 Score=38.79 Aligned_cols=43 Identities=9% Similarity=0.154 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEeeE
Q 004136 490 FSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDL 536 (771)
Q Consensus 490 ~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~ 536 (771)
+..+++..+-+.+|+++++. + +.-.-+...|.+|++|+.....
T Consensus 30 i~~~i~~~~Le~~G~~Ve~~--~--~~~~~~~~AL~~G~iD~~~e~w 72 (280)
T 3tmg_A 30 AATNVLKVVFEKMGYNAEIF--S--VTTSIMYQYLASGKIDGTVSSW 72 (280)
T ss_dssp HHHHHHHHHHHHTTEEEEEE--E--CCHHHHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEE--E--CCcHHHHHHHHCCCCcEEEecc
Confidence 44567777777799886664 3 2345688999999999987644
No 205
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=84.08 E-value=14 Score=36.54 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEee---EeeeccceeeeecccceeeccEEEEEec
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGD---LTILGNRTEYVEFTQPYAESGFSMIVPA 563 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~---~~~t~~r~~~~~fs~p~~~~~~~~~v~~ 563 (771)
..+-.+++..+.++. +.+ +.+... ....++..|.+|++|+++.. ..... ..+. +.|+....+.++++.
T Consensus 113 ~~~l~~~l~~f~~~~P~i~--i~l~~~--~~~~~~~~l~~g~~Dl~i~~~~~~~~~~---~~l~-~~~l~~~~~~~v~~~ 184 (310)
T 2esn_A 113 FALLPPLMNRLQHSAPGVR--LRLVNA--ERKLSVEALASGRIDFALGYDEEHERLP---EGIQ-AHDWFADRYVVVARR 184 (310)
T ss_dssp HHHHHHHHHHHHHHSTTCE--EEEECC--SSSCCHHHHHHTSSSEEEECCSTTCCCC---TTEE-EEEEEEECEEEEEES
T ss_pred HHHHHHHHHHHHHHCCCeE--EEEEeC--CcccHHHHHHcCCCCEEEecCcccccCC---cCcc-eeeeeccceEEEEeC
Confidence 356778888888887 444 454442 33457888999999999874 22211 1222 357888889998887
Q ss_pred CCC
Q 004136 564 KQE 566 (771)
Q Consensus 564 ~~~ 566 (771)
..+
T Consensus 185 ~~p 187 (310)
T 2esn_A 185 DHP 187 (310)
T ss_dssp SCT
T ss_pred CCC
Confidence 653
No 206
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=84.07 E-value=6.5 Score=39.57 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=44.3
Q ss_pred CCCCChhHhhhCCceEEEecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhH
Q 004136 671 PNVTDIQSLKSGNLKVGCVDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYE 738 (771)
Q Consensus 671 ~~i~~~~dL~~~~~~~g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~ 738 (771)
.+|++++||+ |+|+.+........+++. .+-. . ..-...|.+.+|++|.+|+.....+.+
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~~a-lGa~---p--v~m~~~Evy~ALq~G~vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYAKY-VGAS---P--TPMAFSEVYLALQTNAVDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHHHH-HTCE---E--EECCGGGHHHHHHTTSSSEEEEEHHHH
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHHHH-cCCe---e--eecCHHHHHHHHHcCCcceEeccHHHH
Confidence 5799999999 999988765444556665 3322 1 221378999999999999999877665
No 207
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=83.60 E-value=13 Score=37.01 Aligned_cols=120 Identities=15% Similarity=0.051 Sum_probs=78.9
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHHHHH
Q 004136 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (771)
Q Consensus 36 ~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~v~~ 115 (771)
+||++.....+. ...|++.++++.|- . ++.+++..+-.++..+.+.+.+|+ ++++.+|+.... ..+..+..
T Consensus 128 ~Ig~i~g~~~~~---r~~Gf~~~~~~~~~---~-~~~~~~~~~~~~~~~g~~~a~~ll-~~~~daI~~~~D-~~a~Gv~~ 198 (296)
T 2hqb_A 128 KVGVIAAFPWQP---EVEGFVDGAKYMNE---S-EAFVRYVGEWTDADKALELFQELQ-KEQVDVFYPAGD-GYHVPVVE 198 (296)
T ss_dssp EEEEEESCTTCH---HHHHHHHHHHHTTC---C-EEEEEECSSSSCHHHHHHHHHHHH-TTTCCEEECCCT-TTHHHHHH
T ss_pred eEEEEcCcCchh---hHHHHHHHHHHhCC---C-eEEEEeeccccCHHHHHHHHHHHH-HCCCcEEEECCC-CCCHHHHH
Confidence 688887654222 67899999988763 3 444444444357888999999999 578999996443 34555556
Q ss_pred hhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCe
Q 004136 116 IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWR 168 (771)
Q Consensus 116 ~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~ 168 (771)
.+++.++-+|++... ...+ ...|.+..+..+-...+...++.+..-.|+
T Consensus 199 a~~e~Gv~viG~D~~--~~~~--~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 247 (296)
T 2hqb_A 199 AIKDQGDFAIGYVGD--QADL--GGSTILTSTVQHVDDLYVLVAKRFQEGKLE 247 (296)
T ss_dssp HHHHHTCEEEEEESC--CSSS--SCSSEEEEEEECHHHHHHHHHHHTTTTCCC
T ss_pred HHHHcCCEEEEEecc--hhhh--CCCeEEEEEEEEhHHHHHHHHHHHHcCCCC
Confidence 667778888887754 2222 123567677777666777666666555565
No 208
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=83.36 E-value=13 Score=38.07 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhc--ccccEEEeeEeeeccc---eeeeecccceeeccEEEEEecC
Q 004136 491 SIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYD--KTYDAAVGDLTILGNR---TEYVEFTQPYAESGFSMIVPAK 564 (771)
Q Consensus 491 ~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~--~~~D~~~~~~~~t~~r---~~~~~fs~p~~~~~~~~~v~~~ 564 (771)
.-+|.+.+.++. |.++++..- .-..++.++.+ ..+|+.++.-.-..++ ....+...+|....+++++++.
T Consensus 57 ~~~l~~~Fe~~~pgv~V~~~~g----gSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVliv~~~ 132 (354)
T 3k6v_A 57 FEELEAEFEAQHPGVDVQREAA----GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAYTNE 132 (354)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEE----CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEECTT
T ss_pred HHHHHHHHHHHCCCcEEEEEeC----CHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEEEEECC
Confidence 346777788887 888665532 24467788853 4799987632111111 1123344678888999999887
Q ss_pred CC
Q 004136 565 QE 566 (771)
Q Consensus 565 ~~ 566 (771)
++
T Consensus 133 ~p 134 (354)
T 3k6v_A 133 SK 134 (354)
T ss_dssp ST
T ss_pred Cc
Confidence 64
No 209
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=82.85 E-value=7 Score=39.27 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEee
Q 004136 490 FSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGD 535 (771)
Q Consensus 490 ~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~ 535 (771)
+...++..+-+.+|+++++... ..-.-+...|.+|++|+....
T Consensus 22 ~~~~i~~~~Le~~Gy~Ve~~~~---~~~~~~~~Al~~G~iDi~~e~ 64 (309)
T 1r9l_A 22 FQTLLVSRALEKLGYTVNKPSE---VDYNVGYTSLASGDATFTAVN 64 (309)
T ss_dssp HHHHHHHHHHHHTTCEECCCEE---CCHHHHHHHHHHTSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEeec---CchHHHHHHHhcCCceEEecc
Confidence 3446677777788988665421 134667889999999998653
No 210
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=80.44 E-value=2.8 Score=43.80 Aligned_cols=70 Identities=7% Similarity=0.082 Sum_probs=51.7
Q ss_pred CCCCChhHhhhCCceEEEecChHHHHHHHHhc------CCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHh
Q 004136 671 PNVTDIQSLKSGNLKVGCVDDSFVKKYLEEVL------GFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDK 744 (771)
Q Consensus 671 ~~i~~~~dL~~~~~~~g~~~~s~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~ 744 (771)
..|++++||. + ||+..++..+.+..... +. ..+++.|.+ ..+++.+|.+|++||++.+..+...+-..
T Consensus 26 s~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~-~~~a~~aL~nG~vDAiv~~~~~~~~le~~ 99 (398)
T 2xxp_A 26 SEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSS-YLAAYKSLIAGETKAIVLNSVFENIIELE 99 (398)
T ss_dssp CSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSS-HHHHHHHHHTTSCSCEEEEHHHHHHHHHH
T ss_pred CCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCC-HHHHHHHHHcCCCCEEEEchHHHHHHHhh
Confidence 3599999998 4 99977766655433211 21 135778998 99999999999999999999887665544
Q ss_pred cC
Q 004136 745 YC 746 (771)
Q Consensus 745 ~c 746 (771)
+.
T Consensus 100 y~ 101 (398)
T 2xxp_A 100 YP 101 (398)
T ss_dssp CT
T ss_pred cc
Confidence 44
No 211
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=79.74 E-value=39 Score=31.43 Aligned_cols=71 Identities=8% Similarity=0.124 Sum_probs=49.0
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
..+-.+++..+.++. +.+ +++... ....++..|.+|++|+++...... ...+. +.++....+.+++++..+
T Consensus 42 ~~~l~~~l~~f~~~~P~v~--l~~~~~--~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~hp 113 (238)
T 2hxr_A 42 SYFIGPLMADFYARYPSIT--LQLQEM--SQEKIEDMLCRDELDVGIAFAPVH---SPELE-AIPLLTESLALVVAQHHP 113 (238)
T ss_dssp TTTHHHHHHHHHHHCTTSC--EEEEEC--CHHHHHHHHHTTSCSEEEEESSCC---CTTEE-EEEEEEEEEEEEEETTSG
T ss_pred HHHHHHHHHHHHHhCCCcE--EEEEEC--CHHHHHHHHHcCCCcEEEEcCCCC---cccce-eeeeccCcEEEEEcCCCc
Confidence 356778889998887 445 554442 467789999999999998643221 22232 257888889998887653
No 212
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=78.44 E-value=35 Score=32.45 Aligned_cols=75 Identities=9% Similarity=0.050 Sum_probs=52.5
Q ss_pred ccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccce---eeeecccceeeccEEEEEecC
Q 004136 488 DGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRT---EYVEFTQPYAESGFSMIVPAK 564 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~---~~~~fs~p~~~~~~~~~v~~~ 564 (771)
.|+.-+|+..+.++.|.++++.... -..++.++.+|.+|+++..-....+.. ....-..|++...+++++|+.
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~g----Sg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVlV~P~~ 93 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIAAG----TGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVIVGPKA 93 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEEEC----HHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEEEECTT
T ss_pred hhHHHHHHHHHHHHhCceEEEEEcC----hHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEEEEeCC
Confidence 5778899999999888876555433 456889999999999977544322211 011123688888999999887
Q ss_pred CC
Q 004136 565 QE 566 (771)
Q Consensus 565 ~~ 566 (771)
++
T Consensus 94 ~P 95 (237)
T 3muq_A 94 DP 95 (237)
T ss_dssp CT
T ss_pred Ch
Confidence 64
No 213
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=78.14 E-value=2.6 Score=41.36 Aligned_cols=67 Identities=9% Similarity=0.133 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHhhccC-cc-cccch-------hhHHHHHHHHHHHHHHHHHhhcccccceeecccCCCCCChhHh
Q 004136 613 QISNILWFAFSTIFFSH-RA-NIQSN-------LTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLEPNVTDIQSL 679 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~-~~-~~~~~-------s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~~~i~~~~dL 679 (771)
++.+++|+++.++...| ++ .|.+. .+|++...|.++++.++++..+.++..+...+....+..-.|+
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 276 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDK 276 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC-----
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 57899999999999988 44 34444 3699999999999999999999998888766665554444443
No 214
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=77.62 E-value=12 Score=36.95 Aligned_cols=73 Identities=11% Similarity=0.005 Sum_probs=48.9
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
..+-..++..+.++. +.+ +.+... ..+.++..|.+|++|+++........ ...+ -+.|+....+.++++...+
T Consensus 104 ~~~l~~~l~~f~~~~P~i~--i~l~~~--~~~~~~~~l~~g~~Dlai~~~~~~~~-~~~l-~~~~L~~~~~~~v~~~~hp 177 (305)
T 3fxq_A 104 LAALPLALASFAREFPDVT--VNVRDG--MYPAVSPQLRDGTLDFALTAAHKHDI-DTDL-EAQPLYVSDVVIVGQRQHP 177 (305)
T ss_dssp HTHHHHHHHHHHHHCTTCE--EEEEEC--CTTTTHHHHHHTSSSEEEEECCGGGS-CTTE-EEEEEEECCEEEEEETTCT
T ss_pred HHHHHHHHHHHHHHCCCCE--EEEEEC--CHHHHHHHHHcCCCCEEEecCCCCCC-ccCe-eEEEeecCcEEEEEcCCCC
Confidence 456778888888887 555 444432 34668999999999999874332210 1122 2367888899999987664
No 215
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=75.97 E-value=28 Score=27.68 Aligned_cols=99 Identities=19% Similarity=0.303 Sum_probs=65.9
Q ss_pred EEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHH
Q 004136 144 LIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGE 223 (771)
Q Consensus 144 ~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~ 223 (771)
+|-+..++....+.++.-+++.| -++.++|++.+- ....+.+ +.+.+.| +.+-..+ + ..+++..
T Consensus 4 ifvvfssdpeilkeivreikrqg-vrvvllysdqde---krrrerl-eefekqg-vdvrtve----d------kedfren 67 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDE---KRRRERL-EEFEKQG-VDVRTVE----D------KEDFREN 67 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCH---HHHHHHH-HHHHTTT-CEEEECC----S------HHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchH---HHHHHHH-HHHHHcC-Cceeeec----c------HHHHHHH
Confidence 56666777778888888888877 578888988663 2223444 5677888 6654332 1 2577777
Q ss_pred HHHhhhC--CceEEEEE-ecChhHHHHHHHHHHHcCCC
Q 004136 224 LKKVQDK--QSRVFIVL-QASLDMTIHLFTEANRMGLV 258 (771)
Q Consensus 224 l~~l~~~--~~~vIv~~-~~~~~~~~~il~~a~~~g~~ 258 (771)
++.+-.. +-+++++. .-+.+-...++.+|.+.|..
T Consensus 68 ireiwerypqldvvvivttddkewikdfieeakergve 105 (162)
T 2l82_A 68 IREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVE 105 (162)
T ss_dssp HHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcE
Confidence 7766543 44555541 33445688999999999963
No 216
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=75.13 E-value=17 Score=35.85 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeeccccee-eccEEEEEecCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYA-ESGFSMIVPAKQ 565 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~-~~~~~~~v~~~~ 565 (771)
..+..+++..+.++. +.+ +.+.. +....++..|.+|++|+++....... ..+. ..|+. ...+.++++...
T Consensus 107 ~~~l~~~l~~f~~~~P~i~--i~l~~--~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 107 PLYLPGLIAGFRQAYPGVE--IRIRD--GEQQELVQGLTSGRFDLAFLYEHDLD---STIE-TEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp HHHHHHHHHHHHHHCTTEE--EEEEE--ECHHHHHHHHHHTSCSEEEECSSSCC---TTEE-EEESSCCBCCEEEEETTC
T ss_pred HHHHHHHHHHHHHHCCCeE--EEEEe--CCHHHHHHHHHCCCccEEEEeccccc---cccc-eeeeeeccccEEEecCCC
Confidence 456778888888887 555 44433 24678899999999999986432222 2222 24565 666777777665
Q ss_pred C
Q 004136 566 E 566 (771)
Q Consensus 566 ~ 566 (771)
+
T Consensus 179 p 179 (306)
T 3fzv_A 179 R 179 (306)
T ss_dssp T
T ss_pred c
Confidence 4
No 217
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=73.76 E-value=10 Score=37.28 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCC---CCCchHHHHHHHHHhhhCCc
Q 004136 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISS---ISDPKEAVRGELKKVQDKQS 232 (771)
Q Consensus 156 ~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~---~~d~~~~~~~~l~~l~~~~~ 232 (771)
.++++.++..+.++|+++. .|. ....+.+++.+++.| +++........... ...+...+.+.++++...++
T Consensus 135 ~A~~~al~~~g~~rvgvlt---p~~--~~~~~~~~~~l~~~G-i~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~ga 208 (273)
T 2xed_A 135 GALVEGLRALDAQRVALVT---PYM--RPLAEKVVAYLEAEG-FTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEV 208 (273)
T ss_dssp HHHHHHHHHTTCCEEEEEE---CSC--HHHHHHHHHHHHHTT-CEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTC
T ss_pred HHHHHHHHHcCCCeEEEEc---CCh--hhhHHHHHHHHHHCC-CEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCC
Confidence 4455556667889999996 565 555668889999999 88765543332110 01112457778888877799
Q ss_pred eEEEEEe-cChhHHHHHHHHHH-HcC
Q 004136 233 RVFIVLQ-ASLDMTIHLFTEAN-RMG 256 (771)
Q Consensus 233 ~vIv~~~-~~~~~~~~il~~a~-~~g 256 (771)
|+||+ . |..-....+..+++ +.|
T Consensus 209 daIvL-g~CT~l~~~~~~~~le~~lg 233 (273)
T 2xed_A 209 DALVI-SCAVQMPSLPLVETAEREFG 233 (273)
T ss_dssp SEEEE-ESSSSSCCTTHHHHHHHHHS
T ss_pred CEEEE-cCCCCcchHHhHHHHHHHhC
Confidence 99999 7 76655434444433 245
No 218
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=73.48 E-value=8.4 Score=37.61 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=38.6
Q ss_pred hhHhhhCCceEEEecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEec-chhHH
Q 004136 676 IQSLKSGNLKVGCVDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLE-RPYEK 739 (771)
Q Consensus 676 ~~dL~~~~~~~g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~-~~~~~ 739 (771)
++||+ |.+||+...+....++-+.. ....++. +.. ..+...++.+|++||.+.- .+.+.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~l-l~~~~~~-~~~-~~~~~~al~~G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLY-AQGFVPV-EVR-YDRILPMVAQGEVEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHH-CSSCEEE-ECC-GGGHHHHHHTTSSSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHH-hccCcee-ecC-hHHHHHHHHCCCCCEEEEecchhhh
Confidence 67887 99999976555544433311 1122333 334 5688999999999999985 66655
No 219
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=73.21 E-value=56 Score=29.97 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=99.3
Q ss_pred cEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHHH
Q 004136 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (771)
Q Consensus 34 ~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~v 113 (771)
..+|.++.|.. .+..-++-...+.+. .+.+ .+ ++-..++..++++ ++++.+||.-+. ++..+
T Consensus 4 ~~~I~~iapy~-----~l~~~~~~i~~e~~~-----~i~i--~~--~~l~~~v~~a~~~--~~~~dVIISRGg--ta~~l 65 (196)
T 2q5c_A 4 SLKIALISQNE-----NLLNLFPKLALEKNF-----IPIT--KT--ASLTRASKIAFGL--QDEVDAIISRGA--TSDYI 65 (196)
T ss_dssp CCEEEEEESCH-----HHHHHHHHHHHHHTC-----EEEE--EE--CCHHHHHHHHHHH--TTTCSEEEEEHH--HHHHH
T ss_pred CCcEEEEEccH-----HHHHHHHHHHhhhCC-----ceEE--EE--CCHHHHHHHHHHh--cCCCeEEEECCh--HHHHH
Confidence 35889998884 444445545555432 3443 32 3467788888887 588999985433 33333
Q ss_pred HHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHH
Q 004136 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEAL 193 (771)
Q Consensus 114 ~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~ 193 (771)
. +..++|+|....+ .....+++... +.++ ++++++...+.. .+ .+.+.+.+
T Consensus 66 r---~~~~iPVV~I~~s--------------------~~Dil~al~~a-~~~~-~kIavvg~~~~~---~~-~~~~~~ll 116 (196)
T 2q5c_A 66 K---KSVSIPSISIKVT--------------------RFDTMRAVYNA-KRFG-NELALIAYKHSI---VD-KHEIEAML 116 (196)
T ss_dssp H---TTCSSCEEEECCC--------------------HHHHHHHHHHH-GGGC-SEEEEEEESSCS---SC-HHHHHHHH
T ss_pred H---HhCCCCEEEEcCC--------------------HhHHHHHHHHH-HhhC-CcEEEEeCcchh---hH-HHHHHHHh
Confidence 3 3467999865544 23345555544 4444 489999887653 22 56666665
Q ss_pred hccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCC
Q 004136 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (771)
Q Consensus 194 ~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~ 259 (771)
| .++.... +.. . .+....++++++.+.++|+- ... ..+.|++.|+..
T Consensus 117 ---~-~~i~~~~-~~~-~------~e~~~~i~~l~~~G~~vvVG-~~~------~~~~A~~~Gl~~ 163 (196)
T 2q5c_A 117 ---G-VKIKEFL-FSS-E------DEITTLISKVKTENIKIVVS-GKT------VTDEAIKQGLYG 163 (196)
T ss_dssp ---T-CEEEEEE-ECS-G------GGHHHHHHHHHHTTCCEEEE-CHH------HHHHHHHTTCEE
T ss_pred ---C-CceEEEE-eCC-H------HHHHHHHHHHHHCCCeEEEC-CHH------HHHHHHHcCCcE
Confidence 3 4554332 221 1 46899999999999999877 322 256788999865
No 220
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=73.21 E-value=17 Score=34.41 Aligned_cols=175 Identities=15% Similarity=0.151 Sum_probs=88.8
Q ss_pred cEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCC----CH---H----HHHHHHHHHHhcCCeEEEE
Q 004136 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR----DP---F----QAATAAQELINKEKVKVIA 102 (771)
Q Consensus 34 ~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~----~~---~----~a~~~~~~li~~~~v~avi 102 (771)
..+||++.|.++..-.+ .++...++.+..|+..+.+.-...+. +. . ...+.+..|. +.++.+|+
T Consensus 6 ~~~ig~i~p~~~~~~~e----~~~~~~~~~~~~p~~~i~~~~~p~g~~~~~~~~~~~~~~~~l~~~~~~l~-~~g~d~iv 80 (228)
T 2eq5_A 6 KYTIGLIRVITLEDKEI----LNLHGRIIESAFPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEFE-REGVDAII 80 (228)
T ss_dssp CEEEEEEESSCCCCHHH----HTHHHHHHHHHCTTEEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHHH-HTTCSEEE
T ss_pred ceEEEEEeccCccCHHH----HHHHHHHHHhhCCCCeEEEEeCCCCchhccccccHHHhHHHHHHHHHHHH-HCCCCEEE
Confidence 57899999987211111 22233334334456566553332211 11 1 1123344454 67888777
Q ss_pred cCCchHhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCC
Q 004136 103 GMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182 (771)
Q Consensus 103 Gp~~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~ 182 (771)
-+-.+. ..+..+.+..++|++..... .++.+...+ ++|+++......
T Consensus 81 iaCnta--~~~~~l~~~~~iPvi~i~~~---------------------------~~~~a~~~~-~rigVlat~~t~--- 127 (228)
T 2eq5_A 81 ISCAAD--PAVEKVRKLLSIPVIGAGSS---------------------------VSALALAYG-RRVGVLNLTEET--- 127 (228)
T ss_dssp ECSTTC--TTHHHHHHHCSSCEEEHHHH---------------------------HHHHHHTTC-SSEEEECSSSCC---
T ss_pred EeCCch--HHHHHHHHhCCCCEeCccHH---------------------------HHHHHHHhC-CeEEEEecCccc---
Confidence 543333 33334445567887753211 111122345 889999876443
Q ss_pred cchHHHHHHHH-hccCCeEEEEeeecCCCCCCC--CchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHH
Q 004136 183 SGKLALLAEAL-QNVSSSEIQSRLVLPPISSIS--DPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252 (771)
Q Consensus 183 ~~~~~~l~~~~-~~~g~~~i~~~~~~~~~~~~~--d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a 252 (771)
. ..+++.+ ++.| .++.... +....... .....+.+.++++.+.++|+|++ .|..-....+..+.
T Consensus 128 ~---~~~~~~~~~~~g-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvL-gCT~~~t~~~~~~i 194 (228)
T 2eq5_A 128 P---KVIRSILGNNLI-AEDHPSG-VSNTLDLLTDWGRREVINAAKRLKEKGVEVIAL-GCTGMSTIGIAPVL 194 (228)
T ss_dssp C---HHHHHHHGGGEE-EEECCTT-CCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEE-CCTHHHHHTCHHHH
T ss_pred H---HHHHHHHHHHhC-ccccCCc-eeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEE-CCCCcchHHHHHHH
Confidence 1 3577788 7777 6542111 10000000 11234666777777779999999 77766533344443
No 221
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=72.38 E-value=12 Score=35.50 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=62.2
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCC---CCCchHHHHHHHHHhhhC-
Q 004136 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISS---ISDPKEAVRGELKKVQDK- 230 (771)
Q Consensus 155 ~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~---~~d~~~~~~~~l~~l~~~- 230 (771)
..++++.++..+.++|+++. .|. ....+.+++.+++.| +++........... ...+...+.+.++++.+.
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~--~~~~~~~~~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYI--KERTLEEVEWWRNKG-FEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEV 169 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSC--HHHHHHHHHHHHTTT-CEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCc--hHHHHHHHHHHHhCC-cEEecccCCCCCCcchhhccCHHHHHHHHHHHhccc
Confidence 56677777778889999995 465 555668888999999 88765543332210 001124577788888777
Q ss_pred -CceEEEEEecChhHHHHHHHHHH-HcC
Q 004136 231 -QSRVFIVLQASLDMTIHLFTEAN-RMG 256 (771)
Q Consensus 231 -~~~vIv~~~~~~~~~~~il~~a~-~~g 256 (771)
++|+||+ .|..-....+..+.+ +.|
T Consensus 170 ~gadaIvL-gCT~l~~~~~~~~l~~~~g 196 (223)
T 2dgd_A 170 LKADAVYI-ACTALSTYEAVQYLHEDLD 196 (223)
T ss_dssp TTSSEEEE-CCTTSCCTTHHHHHHHHHT
T ss_pred CCCCEEEE-eCCcccHHHHHHHHHHHhC
Confidence 8999999 777665444444443 245
No 222
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=70.42 E-value=9.1 Score=38.23 Aligned_cols=80 Identities=8% Similarity=0.166 Sum_probs=57.6
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHH
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~ 245 (771)
++|+++..+ ++|. ....+.+++++++.| .++..... ..+ .......++.+.+.++|.|++........
T Consensus 3 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~~------~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 72 (313)
T 3m9w_A 3 VKIGMAIDDLRLERW--QKDRDIFVKKAESLG-AKVFVQSA-NGN------EETQMSQIENMINRGVDVLVIIPYNGQVL 72 (313)
T ss_dssp CEEEEEESCCSSSTT--HHHHHHHHHHHHHTS-CEEEEEEC-TTC------HHHHHHHHHHHHHTTCSEEEEECSSTTSC
T ss_pred cEEEEEeCCCCChHH--HHHHHHHHHHHHHcC-CEEEEECC-CCC------HHHHHHHHHHHHHcCCCEEEEeCCChhhh
Confidence 578888875 5677 788999999999999 87765432 111 13456677888888999999834444555
Q ss_pred HHHHHHHHHcCC
Q 004136 246 IHLFTEANRMGL 257 (771)
Q Consensus 246 ~~il~~a~~~g~ 257 (771)
...++++.+.|+
T Consensus 73 ~~~~~~~~~~~i 84 (313)
T 3m9w_A 73 SNVVKEAKQEGI 84 (313)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHHCCC
Confidence 678888888876
No 223
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=69.38 E-value=4.8 Score=40.12 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhccccccee
Q 004136 613 QISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLT 665 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt 665 (771)
++.+++|+++.+++..| ++ .|.+..+|++..+|.++++.+.....+.+...+.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999998 54 6799999999999999999999999999888774
No 224
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=69.37 E-value=7 Score=38.85 Aligned_cols=82 Identities=12% Similarity=-0.023 Sum_probs=56.5
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHH
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~ 245 (771)
++++++..+ ++|. ....+.+++++++.| ..+.....-..+ .......++.+.+.++|.|++........
T Consensus 5 ~~I~~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~~~~~------~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 75 (305)
T 3g1w_A 5 ETYMMITFQSGMDYW--KRCLKGFEDAAQALN-VTVEYRGAAQYD------IQEQITVLEQAIAKNPAGIAISAIDPVEL 75 (305)
T ss_dssp CEEEEEESSTTSTHH--HHHHHHHHHHHHHHT-CEEEEEECSSSC------HHHHHHHHHHHHHHCCSEEEECCSSTTTT
T ss_pred ceEEEEEccCCChHH--HHHHHHHHHHHHHcC-CEEEEeCCCcCC------HHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 678888875 3455 677889999999999 877653211111 14456677888888999999833444445
Q ss_pred HHHHHHHHHcCCC
Q 004136 246 IHLFTEANRMGLV 258 (771)
Q Consensus 246 ~~il~~a~~~g~~ 258 (771)
...++++.+.|++
T Consensus 76 ~~~~~~~~~~~iP 88 (305)
T 3g1w_A 76 TDTINKAVDAGIP 88 (305)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCc
Confidence 6778888888763
No 225
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=69.31 E-value=25 Score=33.21 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=43.1
Q ss_pred HHHHHhcCCeEEEEcCCchHhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCe
Q 004136 89 AQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWR 168 (771)
Q Consensus 89 ~~~li~~~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~ 168 (771)
+..|. +.++.+|+-+-.+.... +..+.+..++|++.. ..+.++.+...+.+
T Consensus 66 ~~~L~-~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i---------------------------~~a~~~~~~~~~~~ 116 (226)
T 2zsk_A 66 AKALE-RAGAELIAFAANTPHLV-FDDVQREVNVPMVSI---------------------------IDAVAEEILKRGVR 116 (226)
T ss_dssp HHHHH-HHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH---------------------------HHHHHHHHHHTTCC
T ss_pred HHHHH-HcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc---------------------------HHHHHHHHHHcCCC
Confidence 33343 56888777654444322 334444456776532 23334444445678
Q ss_pred EEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEE
Q 004136 169 RVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQ 202 (771)
Q Consensus 169 ~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~ 202 (771)
+|+++.....-. ...+++.+++.| +++.
T Consensus 117 rigvlaT~~T~~-----~~~y~~~l~~~g-~~v~ 144 (226)
T 2zsk_A 117 KVLLLGTKTTMT-----ADFYIKTLEEKG-LEVV 144 (226)
T ss_dssp EEEEESSTTTTS-----CHHHHHHHHTTT-CEEE
T ss_pred eEEEEeCHHHHh-----hhHHHHHHHHCC-CEEE
Confidence 899887543321 235667777778 7653
No 226
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=69.20 E-value=23 Score=34.79 Aligned_cols=63 Identities=11% Similarity=0.024 Sum_probs=42.4
Q ss_pred hhhCCceEEEe-cChHHHHHHHH---hcCCCCCCcccCC-CCHHHHHHHHHcCCceEEEecchhHHHHHHhc
Q 004136 679 LKSGNLKVGCV-DDSFVKKYLEE---VLGFRSGNIVPFG-NTEANYIQKFENNTIDSLFLERPYEKVFLDKY 745 (771)
Q Consensus 679 L~~~~~~~g~~-~~s~~~~~l~~---~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~ 745 (771)
|+ |.+|++. .++..+.+++. ..+. ..++.... . ..+...++.+|++||.+...+.+.....+.
T Consensus 94 Lk--GK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~-~~~~~~al~~G~vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 94 LK--EPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNT-AGEITQGILAGKVNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp CC--SCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCS-HHHHHHHHHHTSCSEEEECTTHHHHHHHHC
T ss_pred CC--CCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCC-HHHHHHHHHcCCCCEEEecccHHHHHHhhC
Confidence 55 8999985 55554443332 2344 23443444 4 889999999999999998888877665554
No 227
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=68.34 E-value=23 Score=36.73 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCCCCCc--chHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceE
Q 004136 157 CIADLARKYNWRRVAAIYEDNVYGGDS--GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234 (771)
Q Consensus 157 a~~~~l~~~~w~~v~ii~~~~~~g~~~--~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~v 234 (771)
.+.++++.++.+++.+|++..... . +..+.+.+.+++.| +++.....+..+. +.+.+.+.++.+++.++|+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~--~~~g~~~~v~~~L~~~g-~~~~~~~~~~~~p----~~~~v~~~~~~~~~~~~d~ 95 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRA--IKDGAVDKTLHYLREAG-IEVAIFDGVEPNP----KDTNVRDGLAVFRREQCDI 95 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC----CCSSHHHHHHHHHHTT-CEEEEECCCCSSC----BHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHcCCCEEEEEECcchhh--ccchHHHHHHHHHHHcC-CeEEEECCccCCC----CHHHHHHHHHHHHhcCCCE
Confidence 456677778889999999876654 4 47899999999999 7763322222222 1256888888888889999
Q ss_pred EEEEec--ChhHHHHHHHHHH
Q 004136 235 FIVLQA--SLDMTIHLFTEAN 253 (771)
Q Consensus 235 Iv~~~~--~~~~~~~il~~a~ 253 (771)
||- .+ +.-++..++....
T Consensus 96 IIa-vGGGsv~D~aK~iA~~~ 115 (387)
T 3bfj_A 96 IVT-VGGGSPHDCGKGIGIAA 115 (387)
T ss_dssp EEE-EESHHHHHHHHHHHHHH
T ss_pred EEE-eCCcchhhHHHHHHHHH
Confidence 996 43 4456777666653
No 228
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=68.17 E-value=54 Score=32.83 Aligned_cols=57 Identities=7% Similarity=-0.072 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEe-e--eeeeceEEEEEecCCCC
Q 004136 712 FGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAI-N--TYRFGGLGFVSNIIYSH 770 (771)
Q Consensus 712 ~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~-~--~~~~~~~g~~~~k~s~~ 770 (771)
+.+ ..+..+.+.+|++.+.+.....+..+.+...+ +..+ + .-.....+++++|+++|
T Consensus 216 ~~~-~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~-~~~~~P~~g~~~~~~~~~i~~~s~~ 275 (351)
T 4edp_A 216 YSK-SSDLANMFSNGEIVAAVASDFAFGTISKAKPE-VINVIPESGTYLNFNTININKNSKN 275 (351)
T ss_dssp ECC-HHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-CEEECCTTCCBEEEEEEEEBTTCSC
T ss_pred cCC-hHHHHHHHHcCCEEEEecCcHHHHHHHhcCCC-eeeeCCCCCcccceeeEEEECCCCC
Confidence 344 77889999999998888766665555554443 3332 2 12234578999999876
No 229
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=67.46 E-value=53 Score=31.63 Aligned_cols=72 Identities=11% Similarity=-0.041 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccce-eeeecccceeeccEEEEEecCCC
Q 004136 490 FSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRT-EYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 490 ~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~-~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
+-.+++..+.++. +.+ +++.. +....++..|.+|++|+++........+. ..+. ..|+....+.+++++..+
T Consensus 41 ~l~~~l~~f~~~~P~i~--v~i~~--~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~~~~p 114 (290)
T 1twy_A 41 IMDVLAEKYNQQHPETY--VAVQG--VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVNQANP 114 (290)
T ss_dssp HHHHHHHHHHHHCTTCE--EEEEE--SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEECTTCC
T ss_pred HHHHHHHHHHhhCCCce--EEEEe--cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEECCCCC
Confidence 5567788888887 666 44433 35678999999999999986443322110 1222 357888888888876653
No 230
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=66.58 E-value=6.9 Score=37.28 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCeEEEEcCCchHhHHHHHHhhccCCccEEe
Q 004136 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (771)
Q Consensus 87 ~~~~~li~~~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is 126 (771)
+.+..|. +.++.+|+-+-.+.. ..+..+-+..++|+|.
T Consensus 65 ~~~~~l~-~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~ 102 (228)
T 1jfl_A 65 WTAKRLE-ECGADFIIMPCNTAH-AFVEDIRKAIKIPIIS 102 (228)
T ss_dssp HHHHHHH-HHTCSEEECSCTGGG-GGHHHHHHHCSSCBCC
T ss_pred HHHHHHH-HcCCCEEEEcCccHH-HHHHHHHHhCCCCEec
Confidence 4455554 678888886544443 4444555556788774
No 231
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=66.50 E-value=95 Score=29.87 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=48.3
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (771)
..+-.+++..+.++. +.+ +.+... ....++..|.+|++|+++...... ...+. +.|+....+.++++...
T Consensus 103 ~~~l~~~l~~f~~~~P~i~--l~~~~~--~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 103 YRSLPLLLRAFLTSTPTAT--VSLTHM--TKDEQVEGLLAGTIHVGFSRFFPR---HPGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp GTHHHHHHHHHHHHCTTEE--EEEEEC--CHHHHHHHHHHTSCSEEEESCCCC---CTTEE-EEEEEEEEEEEEEEGGG
T ss_pred HHHHHHHHHHHHHHCCCcE--EEEEeC--CHHHHHHHHHCCCccEEEEecCCC---CCCce-EEEEeeccEEEEEeCCC
Confidence 456778888888887 444 444442 456789999999999998644322 12232 35788888888887665
No 232
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=66.20 E-value=16 Score=36.94 Aligned_cols=60 Identities=7% Similarity=0.006 Sum_probs=52.1
Q ss_pred cchHHHHHHHHHHHhhccC-cc-ccc--chhhHHHHHHHHHHHHHHHHHhhcccccceeecccC
Q 004136 611 KDQISNILWFAFSTIFFSH-RA-NIQ--SNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLE 670 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~-~~-~~~--~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~ 670 (771)
..++..++|+++.+++..| |. .|. +..+|++...-.+.++++.+.-++-+.+.++.++..
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 4578999999999999998 54 453 688999999999999999999999999999887765
No 233
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=65.79 E-value=10 Score=38.20 Aligned_cols=87 Identities=10% Similarity=0.059 Sum_probs=54.9
Q ss_pred CCCCCChhHhhhCCceEEEecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHH-HHhcCCc
Q 004136 670 EPNVTDIQSLKSGNLKVGCVDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVF-LDKYCKK 748 (771)
Q Consensus 670 ~~~i~~~~dL~~~~~~~g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~-~~~~c~~ 748 (771)
..+|++++||+ |+|+.+..+......++. .+-. .. .-...|.+.++.+|.+|+.....+.+... ..+..+.
T Consensus 129 ~~pI~s~~Dlk--G~KiR~~~~~~~~~~~~~-lGa~---pv--~m~~~Evy~ALq~G~VDg~~~~~~~~~~~~~~ev~~y 200 (316)
T 2vpn_A 129 DEPITSPEDFD--NKKIRTMTNPLLAETYKA-FGAT---PT--PLPWGEVYGGLQTGIIDGQENPIFWIESGGLYEVSPN 200 (316)
T ss_dssp SSCCCSGGGGT--TCEEEECSCHHHHHHHHH-HTCE---EE--ECCGGGHHHHHHHTSCSEEEEEHHHHHHTTGGGTCCE
T ss_pred CCCCCChHHhC--CCEEEeCCCHHHHHHHHH-cCCe---ee--ecCHHHHHHHHHcCCcceeeCCHHHHHhcCHHHhhhh
Confidence 35799999999 999988766666677766 3422 21 21378999999999999998765443211 1233443
Q ss_pred eeEee-eeeeceEEEEEec
Q 004136 749 YTAIN-TYRFGGLGFVSNI 766 (771)
Q Consensus 749 l~~~~-~~~~~~~g~~~~k 766 (771)
+...+ .+ ..+.+++++
T Consensus 201 ~~~~~~~~--~~~~~~~n~ 217 (316)
T 2vpn_A 201 LTFTSHGW--FTTAMMANQ 217 (316)
T ss_dssp EEECCCCE--EEEEEEEEH
T ss_pred heeccccc--cceEEEEcH
Confidence 43333 22 244555654
No 234
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=65.32 E-value=46 Score=32.92 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCC
Q 004136 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 489 G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
.+-.+++..+.++. +.+ +.+... ....++.+|.+|++|+++...... ...+. +.|+....+.++++...+
T Consensus 118 ~~l~~~l~~f~~~~P~v~--l~l~~~--~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~hp 188 (315)
T 1uth_A 118 YFMPPLMEALAQRAPHIQ--ISTLRP--NAGNLKEDMESGAVDLALGLLPEL---QTGFF-QRRLFRHRYVCMFRKDHP 188 (315)
T ss_dssp HHHHHHHHHHHHHCTTCE--EEEECT--TSSCHHHHHHHTSCCEEEECCTTC---CTTEE-EEEEEEECEEEEEETTCS
T ss_pred HHHHHHHHHHHHHCCCcE--EEEEeC--CcccHHHHHHCCCCCEEEecCCCC---CCCce-EEEeeccceEEEEeCCCC
Confidence 45677888888877 555 444442 345689999999999998643221 11222 357888888888876653
No 235
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=64.08 E-value=33 Score=33.80 Aligned_cols=74 Identities=12% Similarity=0.021 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhc-cc-ccEEEeeEe--ee-ccceeeeecccceeeccEEEEE
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYD-KT-YDAAVGDLT--IL-GNRTEYVEFTQPYAESGFSMIV 561 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~-~~-~D~~~~~~~--~t-~~r~~~~~fs~p~~~~~~~~~v 561 (771)
....-++++.+.++. |.++++.. +.-..++..+.+ |. +|+.++.-. +. ..+...++...||....+++++
T Consensus 16 ~~~~~~l~~~F~~~~~gi~V~~~~----~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~~ 91 (296)
T 3cfx_A 16 SVPFEELEAEFEAQHPGVDVQREA----AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAY 91 (296)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEEE----CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCceEEEEe----CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEEE
Confidence 344457888888884 88865542 345678888887 64 999876321 11 1122234455678888899998
Q ss_pred ecCC
Q 004136 562 PAKQ 565 (771)
Q Consensus 562 ~~~~ 565 (771)
++..
T Consensus 92 ~~~~ 95 (296)
T 3cfx_A 92 TNES 95 (296)
T ss_dssp CTTS
T ss_pred eCCC
Confidence 7764
No 236
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=63.44 E-value=43 Score=32.93 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhc-cc-ccEEEeeEe--eec-cceeeeecccceeeccEEEEE
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYD-KT-YDAAVGDLT--ILG-NRTEYVEFTQPYAESGFSMIV 561 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~-~~-~D~~~~~~~--~t~-~r~~~~~fs~p~~~~~~~~~v 561 (771)
....-++++.+.++. |.++++.. +....++..+.+ |. +|+.++.-. +.. .+...++...||....+++++
T Consensus 16 ~~~~~~l~~~F~~~~~gi~V~~~~----~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl~~ 91 (295)
T 3cij_A 16 TEPMKAFKRAFEEKHPNVEVQTEA----AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLAY 91 (295)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEE----ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCceEEEEe----CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEEEE
Confidence 334456788888885 88866543 235668888887 64 999876321 111 122233456788888899999
Q ss_pred ecCC
Q 004136 562 PAKQ 565 (771)
Q Consensus 562 ~~~~ 565 (771)
++..
T Consensus 92 ~~~~ 95 (295)
T 3cij_A 92 RNDS 95 (295)
T ss_dssp CTTS
T ss_pred eCCC
Confidence 8765
No 237
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=62.25 E-value=92 Score=29.98 Aligned_cols=73 Identities=10% Similarity=-0.058 Sum_probs=50.0
Q ss_pred cchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccc---eeeeecccceeeccEEEEEecC
Q 004136 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNR---TEYVEFTQPYAESGFSMIVPAK 564 (771)
Q Consensus 489 G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r---~~~~~fs~p~~~~~~~~~v~~~ 564 (771)
.+.-+++..+.++. +.++++... +-...+.+|.+|++|+++....++.+. ...+ -..|+....++++++..
T Consensus 16 ~~l~~~~~~f~~~~P~v~i~v~~~----~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvvv~~~ 90 (264)
T 4ecf_A 16 PLVEAAGEQYTGEHLGTFINVQGG----GTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPIVNKK 90 (264)
T ss_dssp HHHHHHHHHHHHHSTTEEEEEEEE----CHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHCCCceEEEEeC----CCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEEEcCC
Confidence 45567777887777 666444422 357789999999999998765554321 1122 25789999999999876
Q ss_pred CC
Q 004136 565 QE 566 (771)
Q Consensus 565 ~~ 566 (771)
.+
T Consensus 91 ~p 92 (264)
T 4ecf_A 91 VG 92 (264)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 238
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=62.12 E-value=16 Score=35.70 Aligned_cols=82 Identities=6% Similarity=0.053 Sum_probs=57.9
Q ss_pred CeEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhH
Q 004136 167 WRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDM 244 (771)
Q Consensus 167 w~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~ 244 (771)
-++|+++..+ ++|. ....+.+.+++++.| +++..... ..+ .......++.+.+.++|.|++.......
T Consensus 5 ~~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~~------~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 74 (291)
T 3l49_A 5 GKTIGITAIGTDHDWD--LKAYQAQIAEIERLG-GTAIALDA-GRN------DQTQVSQIQTLIAQKPDAIIEQLGNLDV 74 (291)
T ss_dssp TCEEEEEESCCSSHHH--HHHHHHHHHHHHHTT-CEEEEEEC-TTC------HHHHHHHHHHHHHHCCSEEEEESSCHHH
T ss_pred CcEEEEEeCCCCChHH--HHHHHHHHHHHHHcC-CEEEEEcC-CCC------HHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 3578988875 3355 667889999999999 87765421 111 1345667788888899999983445566
Q ss_pred HHHHHHHHHHcCCC
Q 004136 245 TIHLFTEANRMGLV 258 (771)
Q Consensus 245 ~~~il~~a~~~g~~ 258 (771)
....++.+.+.|++
T Consensus 75 ~~~~~~~~~~~~iP 88 (291)
T 3l49_A 75 LNPWLQKINDAGIP 88 (291)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHCCCc
Confidence 77888889888864
No 239
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=60.43 E-value=20 Score=35.33 Aligned_cols=80 Identities=9% Similarity=0.152 Sum_probs=57.1
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHH
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~ 245 (771)
.+|+++..+ ++|. ....+.+.+++++.| .++..... .+. ......++.+.+.++|.|++...+....
T Consensus 3 ~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~--~~~------~~~~~~i~~l~~~~vdgiii~~~~~~~~ 71 (306)
T 8abp_A 3 LKLGFLVKQPEEPWF--QTEWKFADKAGKDLG-FEVIKIAV--PDG------EKTLNAIDSLAASGAKGFVICTPDPKLG 71 (306)
T ss_dssp EEEEEEESCTTSHHH--HHHHHHHHHHHHHHT-EEEEEEEC--CSH------HHHHHHHHHHHHTTCCEEEEECSCGGGH
T ss_pred eEEEEEeCCCCchHH--HHHHHHHHHHHHHcC-CEEEEeCC--CCH------HHHHHHHHHHHHcCCCEEEEeCCCchhh
Confidence 468888875 3455 677888999999999 87754322 111 4456778888888999999834555666
Q ss_pred HHHHHHHHHcCCC
Q 004136 246 IHLFTEANRMGLV 258 (771)
Q Consensus 246 ~~il~~a~~~g~~ 258 (771)
...++++.+.|++
T Consensus 72 ~~~~~~~~~~~iP 84 (306)
T 8abp_A 72 SAIVAKARGYDMK 84 (306)
T ss_dssp HHHHHHHHHTTCE
T ss_pred HHHHHHHHHCCCc
Confidence 7778888888763
No 240
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=59.07 E-value=17 Score=36.42 Aligned_cols=81 Identities=9% Similarity=0.062 Sum_probs=57.1
Q ss_pred CeEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhH
Q 004136 167 WRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDM 244 (771)
Q Consensus 167 w~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~ 244 (771)
-++|+++..+ ++|. ....+.+.+++++.| .++.... .... .......++.+.+.++|.|++.......
T Consensus 3 ~~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~--~~~~-----~~~~~~~i~~~~~~~vdgiIi~~~~~~~ 72 (330)
T 3uug_A 3 KGSVGIAMPTKSSARW--IDDGNNIVKQLQEAG-YKTDLQY--ADDD-----IPNQLSQIENMVTKGVKVLVIASIDGTT 72 (330)
T ss_dssp CCEEEEEECCSSSTHH--HHHHHHHHHHHHHTT-CEEEEEE--CTTC-----HHHHHHHHHHHHHHTCSEEEECCSSGGG
T ss_pred CcEEEEEeCCCcchHH--HHHHHHHHHHHHHcC-CEEEEee--CCCC-----HHHHHHHHHHHHHcCCCEEEEEcCCchh
Confidence 3578888876 4565 677889999999999 8776543 1111 1345567777777789999983344445
Q ss_pred HHHHHHHHHHcCC
Q 004136 245 TIHLFTEANRMGL 257 (771)
Q Consensus 245 ~~~il~~a~~~g~ 257 (771)
....++++.+.|+
T Consensus 73 ~~~~~~~~~~~gi 85 (330)
T 3uug_A 73 LSDVLKQAGEQGI 85 (330)
T ss_dssp GHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 6778888888886
No 241
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=58.78 E-value=1.4e+02 Score=29.16 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (771)
..+-.+++..+.++. +.+ +.+.. +....++.+|.+|++|+++........ .+. +.|+....+.++++...
T Consensus 102 ~~~l~~~l~~f~~~~P~v~--i~l~~--~~~~~~~~~l~~g~~Dlai~~~~~~~~---~l~-~~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 102 FGLLPRIIHLYRQAHPNLR--IELYE--MGTKAQTEALKEGRIDAGFGRLKISDP---AIK-HSLLRNERLMVAVHASH 172 (312)
T ss_dssp GTTHHHHHHHHHHTCTTCE--EEEEE--CCHHHHHHHHHTTSCSEEEESSCCCCT---TEE-EEEEEEEEEEEEEETTS
T ss_pred HhhHHHHHHHHHHHCCCcE--EEEEe--CCHHHHHHHHHcCCCCEEEEeCCCCCC---Cce-EEEeecceEEEEEcCCC
Confidence 356778889988887 555 44444 246789999999999999874332221 222 35788888888887765
No 242
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=58.69 E-value=14 Score=38.28 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceE
Q 004136 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234 (771)
Q Consensus 155 ~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~v 234 (771)
...+.++++.++.+++.+|++..-.. .+..+.+.+.+++.| +++.....+..+. +.+...+.++.+++.++|+
T Consensus 19 ~~~l~~~~~~~g~~~~liVtd~~~~~--~g~~~~v~~~L~~~g-i~~~~~~~v~~~p----~~~~v~~~~~~~~~~~~D~ 91 (383)
T 3ox4_A 19 LEKAIKDLNGSGFKNALIVSDAFMNK--SGVVKQVADLLKAQG-INSAVYDGVMPNP----TVTAVLEGLKILKDNNSDF 91 (383)
T ss_dssp HHHHHHTTTTSCCCEEEEEEEHHHHH--TTHHHHHHHHHHTTT-CEEEEEEEECSSC----BHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHcCCCEEEEEECCchhh--CchHHHHHHHHHHcC-CeEEEECCccCCC----CHHHHHHHHHHHHhcCcCE
Confidence 34566777888999999999875433 446888999999999 7764333333332 1256788888888889999
Q ss_pred EEEEecCh--hHHHHHHHHHH
Q 004136 235 FIVLQASL--DMTIHLFTEAN 253 (771)
Q Consensus 235 Iv~~~~~~--~~~~~il~~a~ 253 (771)
||- .+.+ -++..++....
T Consensus 92 IIa-vGGGsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 92 VIS-LGGGSPHDCAKAIALVA 111 (383)
T ss_dssp EEE-EESHHHHHHHHHHHHHH
T ss_pred EEE-eCCcHHHHHHHHHHHHH
Confidence 886 5444 45666666655
No 243
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=57.85 E-value=21 Score=36.10 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=52.5
Q ss_pred cchHHHHHHHHHHHhhccC-ccc-c--cchhhHHHHHHHHHHHHHHHHHhhcccccceeecccC
Q 004136 611 KDQISNILWFAFSTIFFSH-RAN-I--QSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVRRLE 670 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~-~~~-~--~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~~~~ 670 (771)
..++..++|+++.+++..| |.. | .+..+|++...-.+.++++.+.-++-+.+.++.++..
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 4579999999999999998 543 3 5789999999999999999999999999999887665
No 244
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=57.37 E-value=68 Score=31.16 Aligned_cols=118 Identities=9% Similarity=0.120 Sum_probs=74.2
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEcCCchHhHHHHH
Q 004136 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVVA 114 (771)
Q Consensus 36 ~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~s~~~~~v~ 114 (771)
+||++..........-..|++.|+++.+-. .... +.....+...+.+.+.+++.. .++.+|+.... ..+..+.
T Consensus 128 ~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~---~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~A~g~~ 201 (289)
T 3k9c_A 128 NIAHIDGADAPGGADRRAGFLAAMDRHGLS---ASAT--VVTGGTTETEGAEGMHTLLEMPTPPTAVVAFND-RCATGVL 201 (289)
T ss_dssp SEEEECCTTSTTHHHHHHHHHHHHHHTTCG---GGEE--EECCCSSHHHHHHHHHHHHTSSSCCSEEEESSH-HHHHHHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHHCCCC---CCcc--EEECCCCHHHHHHHHHHHHcCCCCCCEEEECCh-HHHHHHH
Confidence 578887655334556678888888775322 1222 234556788888889999853 46889997543 3344444
Q ss_pred HhhccCC------ccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 115 EIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 115 ~~~~~~~------iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
..+.+.+ +.+|++... .+.....|-+..+..+...+++..++.+.
T Consensus 202 ~al~~~g~~vP~di~vig~D~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 252 (289)
T 3k9c_A 202 DLLVRSGRDVPADISVVGYDDS----RLARIPHVQMTTISQDATHMAEAAVDGAL 252 (289)
T ss_dssp HHHHHTTCCTTTTCEEEEEECC----TTTTCTTTCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCceEEEEECCH----HHHhcCCCCcceEecCHHHHHHHHHHHHH
Confidence 4444433 337777644 23443445667788888888888888773
No 245
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=56.66 E-value=53 Score=31.88 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCeEEEEcCCchHhHHHHHHhhccCCccEEe
Q 004136 85 AATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (771)
Q Consensus 85 a~~~~~~li~~~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is 126 (771)
..+.+..|. +.++.+|+-+-.+..+..+..+-+..++|+|.
T Consensus 54 ~~~~~~~L~-~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 54 TWEMTEHLL-DLNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp HHHHHHHHH-TTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHH-HCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 344455555 68899888654444434566666777999886
No 246
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=55.86 E-value=17 Score=36.13 Aligned_cols=53 Identities=11% Similarity=0.222 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHhhccC-cc-cccchhhH------HHHHHHHHHHHHHHHHhhccccccee
Q 004136 613 QISNILWFAFSTIFFSH-RA-NIQSNLTR------VVVVLWLFVVFILTSSYTASLSSLLT 665 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~-~~-~~~~~s~R------l~~~~~~~~~li~~~~Yta~L~s~lt 665 (771)
++.+++|+++.++...| ++ .|.+..+| ++..+|.++++.++++-.+.+...+.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999988 44 45566665 69999999999999888777666554
No 247
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=55.85 E-value=1.1e+02 Score=27.27 Aligned_cols=69 Identities=13% Similarity=0.052 Sum_probs=47.3
Q ss_pred cchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCC
Q 004136 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (771)
Q Consensus 489 G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (771)
.+-.+++..+.++. +.+ +++.. ++...+..+|.+|++|+++...... ...+. +.++....+.++++...
T Consensus 18 ~~l~~~l~~f~~~~P~i~--i~l~~--~~~~~l~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 18 TILPSMLYAFTAEYPRAS--VEFRE--DTQNRLRTQLEGGELDVAIVYDLDL---SPEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp TTHHHHHHHHHHHCTTEE--EEEEE--CCHHHHHHHHHTTSCSEEEEESSSC---CTTEE-EEEEEEECCEEEEETTC
T ss_pred hhHHHHHHHHHHHCCCce--EEEEE--CcHHHHHHHHHcCCccEEEEecCCC---CCCce-EEEeecCceEEEEeCCC
Confidence 56778899998887 445 44444 2467899999999999998633211 12232 25788888888887655
No 248
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=55.74 E-value=40 Score=35.18 Aligned_cols=94 Identities=14% Similarity=0.018 Sum_probs=0.0
Q ss_pred eEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecCh-----
Q 004136 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL----- 242 (771)
Q Consensus 168 ~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~----- 242 (771)
++|.|+|...-... +.+++.+.+.+.+.| +++.......... ++....+..+. +++.|++ .+..
T Consensus 266 ~~v~I~Y~S~yGnT-e~mA~~ia~gl~~~G-v~~~~~~~~d~~~------~~~s~i~~~i~--~~~~ivl-GspT~~~~~ 334 (410)
T 4dik_A 266 GKVTVIYDSMYGFV-ENVMKKAIDSLKEKG-FTPVVYKFSDEER------PAISEILKDIP--DSEALIF-GVSTYEAEI 334 (410)
T ss_dssp TEEEEEEECSSSHH-HHHHHHHHHHHHHTT-CEEEEEEECSSCC------CCHHHHHHHST--TCSEEEE-EECCTTSSS
T ss_pred cceeeEEecccChH-HHHHHHHHHHHHhcC-CceEEEEeccCCC------CCHHHHHHHHH--hCCeEEE-EeCCcCCcC
Q ss_pred -hHHHHHHHHHHHcCCCCCCeEEEeeCcccc
Q 004136 243 -DMTIHLFTEANRMGLVGKDSVWIVTNTVAN 272 (771)
Q Consensus 243 -~~~~~il~~a~~~g~~~~~~~~i~~~~~~~ 272 (771)
.....++..+......++....|++-+|..
T Consensus 335 ~p~~~~~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 335 HPLMRFTLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred CHHHHHHHHHHHhcccCCCEEEEEECCCCCc
No 249
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=54.67 E-value=13 Score=36.40 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHhhccC-cc-cccchhhHHHHHHHHHHHHHHHHHhhcccccceeec
Q 004136 613 QISNILWFAFSTIFFSH-RA-NIQSNLTRVVVVLWLFVVFILTSSYTASLSSLLTVR 667 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~-~~-~~~~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~ 667 (771)
++.+++|+++.+++..| ++ .|.+..+|++..++.++++.+...+.+.+...+...
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~ 149 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVH 149 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999998 44 679999999999999999999998888887666543
No 250
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=54.62 E-value=20 Score=35.39 Aligned_cols=57 Identities=7% Similarity=0.095 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHHHhhccC-c-cc--cc----chhhHHHHHHHHHHHHHHHHHhhcccccceeec
Q 004136 611 KDQISNILWFAFSTIFFSH-R-AN--IQ----SNLTRVVVVLWLFVVFILTSSYTASLSSLLTVR 667 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~-~-~~--~~----~~s~Rl~~~~~~~~~li~~~~Yta~L~s~lt~~ 667 (771)
..++.+++|+.+.+++..| + .. |. .++.+.+.....+.++++.+.++|-+.+.+...
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~ 242 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAIL 242 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999987 4 32 32 234577777778889999999999998877543
No 251
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=54.55 E-value=22 Score=34.84 Aligned_cols=85 Identities=7% Similarity=0.007 Sum_probs=56.7
Q ss_pred HcCCeEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecC
Q 004136 164 KYNWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS 241 (771)
Q Consensus 164 ~~~w~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~ 241 (771)
.-+-++|+++..+ ++|. ....+.+++++++.| .++..... . . + .......++.+.+.++|.|++....
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~-~----~-~~~~~~~~~~l~~~~vdgiI~~~~~ 74 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFA--QRLINAFKAEAKANK-YEALVATS-Q-N----S-RISEREQILEFVHLKVDAIFITTLD 74 (293)
T ss_dssp ----CEEEEEESCSCSHHH--HHHHHHHHHHHHHTT-CEEEEEEC-S-S----C-HHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCCcEEEEEEecCCcHHH--HHHHHHHHHHHHHcC-CEEEEECC-C-C----C-HHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3345689998875 3355 667888999999999 87765422 1 1 1 1345667788888899999983455
Q ss_pred hhHHHHHHHHHHHcCCC
Q 004136 242 LDMTIHLFTEANRMGLV 258 (771)
Q Consensus 242 ~~~~~~il~~a~~~g~~ 258 (771)
.......++++.+.|++
T Consensus 75 ~~~~~~~~~~~~~~~iP 91 (293)
T 3l6u_A 75 DVYIGSAIEEAKKAGIP 91 (293)
T ss_dssp TTTTHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHcCCC
Confidence 55556778888888763
No 252
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=54.29 E-value=26 Score=34.42 Aligned_cols=81 Identities=10% Similarity=0.096 Sum_probs=52.4
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHH
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~ 245 (771)
.+|+++..+ ++|. ....+.+++++++.| +++.... .... + .......++.+.+.+.+.|++........
T Consensus 5 ~~Ig~i~~~~~~~~~--~~~~~g~~~~~~~~g-~~~~~~~--~~~~---~-~~~~~~~~~~l~~~~vdgiii~~~~~~~~ 75 (303)
T 3d02_A 5 KTVVNISKVDGMPWF--NRMGEGVVQAGKEFN-LNASQVG--PSST---D-APQQVKIIEDLIARKVDAITIVPNDANVL 75 (303)
T ss_dssp EEEEEECSCSSCHHH--HHHHHHHHHHHHHTT-EEEEEEC--CSSS---C-HHHHHHHHHHHHHTTCSEEEECCSCHHHH
T ss_pred eEEEEEeccCCChHH--HHHHHHHHHHHHHcC-CEEEEEC--CCCC---C-HHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 568888754 3465 677888999999999 7765321 1111 1 13345667777778899988823344445
Q ss_pred HHHHHHHHHcCC
Q 004136 246 IHLFTEANRMGL 257 (771)
Q Consensus 246 ~~il~~a~~~g~ 257 (771)
...++.+.+.+.
T Consensus 76 ~~~~~~~~~~~i 87 (303)
T 3d02_A 76 EPVFKKARDAGI 87 (303)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 567788887775
No 253
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=54.20 E-value=29 Score=34.03 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=57.4
Q ss_pred HcCCeEEEEEEEeC---CCCCCcchHHHHHHHHhcc-CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEe
Q 004136 164 KYNWRRVAAIYEDN---VYGGDSGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQ 239 (771)
Q Consensus 164 ~~~w~~v~ii~~~~---~~g~~~~~~~~l~~~~~~~-g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~ 239 (771)
.-+-.+|+++..+. +|. ....+.+++++++. | ..+.......... + .......++.+.+.++|.|++..
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~--~~~~~gi~~~a~~~~g-~~~~~~~~~~~~~---~-~~~~~~~i~~l~~~~vdgiii~~ 77 (304)
T 3gbv_A 5 SNKKYTFACLLPKHLEGEYW--TDVQKGIREAVTTYSD-FNISANITHYDPY---D-YNSFVATSQAVIEEQPDGVMFAP 77 (304)
T ss_dssp --CCEEEEEEEECCCTTSHH--HHHHHHHHHHHHHTGG-GCEEEEEEEECSS---C-HHHHHHHHHHHHTTCCSEEEECC
T ss_pred cCCcceEEEEecCCCCchHH--HHHHHHHHHHHHHHHh-CCeEEEEEcCCCC---C-HHHHHHHHHHHHhcCCCEEEECC
Confidence 34557888888763 355 67788899999888 7 6665543322111 1 13456778888888999999833
Q ss_pred cChhHHHHHHHHHHHcCCC
Q 004136 240 ASLDMTIHLFTEANRMGLV 258 (771)
Q Consensus 240 ~~~~~~~~il~~a~~~g~~ 258 (771)
.........++.+.+.|++
T Consensus 78 ~~~~~~~~~~~~~~~~~iP 96 (304)
T 3gbv_A 78 TVPQYTKGFTDALNELGIP 96 (304)
T ss_dssp SSGGGTHHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHHCCCe
Confidence 3444567778888888763
No 254
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=53.97 E-value=1.7e+02 Score=28.71 Aligned_cols=73 Identities=10% Similarity=0.073 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCC
Q 004136 488 DGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
..+-.+++..+.++.. .+++.+.. +....++..|.+|++|+++...... ....+. +.|+....+.++++...+
T Consensus 105 ~~~l~~~l~~f~~~~P-~v~i~l~~--~~~~~~~~~l~~g~~Dlai~~~~~~--~~~~l~-~~~L~~~~~~~v~~~~~p 177 (324)
T 1al3_A 105 RYALPGVIKGFIERYP-RVSLHMHQ--GSPTQIAEAVSKGNADFAIATEALH--LYDDLV-MLPCYHWNRSIVVTPEHP 177 (324)
T ss_dssp HHTSHHHHHHHHHHCT-EEEEEEEE--CCHHHHHHHHHTTCCSEEEESSCCC--TTSCEE-EEEEEEECEEEEECTTST
T ss_pred hhHHHHHHHHHHHHCC-CCEEEEEE--CCHHHHHHHHHCCCceEEEEecCCC--CCCCee-EEEecCCceEEEEcCCCc
Confidence 3556788888888873 22344444 2467899999999999998642221 111222 257777888888876653
No 255
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=53.59 E-value=12 Score=35.65 Aligned_cols=76 Identities=11% Similarity=0.024 Sum_probs=53.9
Q ss_pred ccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccce---eeeecccceeeccEEEEEecC
Q 004136 488 DGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRT---EYVEFTQPYAESGFSMIVPAK 564 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~---~~~~fs~p~~~~~~~~~v~~~ 564 (771)
.|+.-+|+..+.++.|.++++.... -..++.++.+|.+|++++.-....+.. ....-..|++...+++++|+.
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~g----Sg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVlV~P~~ 93 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIAVG----TGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVIVGPKN 93 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEEEC----HHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEEEECTT
T ss_pred hHHHHHHHHHHHHHhCCeEEEEEcC----hHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEEEEECC
Confidence 5788899999999888886555433 456899999999999977554332211 011123589999999999988
Q ss_pred CCC
Q 004136 565 QEE 567 (771)
Q Consensus 565 ~~~ 567 (771)
++.
T Consensus 94 ~P~ 96 (236)
T 3lr1_A 94 DPA 96 (236)
T ss_dssp CTT
T ss_pred Chh
Confidence 754
No 256
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=53.27 E-value=13 Score=36.72 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=56.6
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHH
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~ 245 (771)
.+|+++..+ ++|. ....+.+++++++.| +++..... ... .+ .......++.+.+.++|.|++........
T Consensus 4 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~--~~~--~~-~~~~~~~i~~l~~~~vdgiii~~~~~~~~ 75 (297)
T 3rot_A 4 DKYYLITHGSQDPYW--TSLFQGAKKAAEELK-VDLQILAP--PGA--ND-VPKQVQFIESALATYPSGIATTIPSDTAF 75 (297)
T ss_dssp CEEEEECSCCCSHHH--HHHHHHHHHHHHHHT-CEEEEECC--SSS--CC-HHHHHHHHHHHHHTCCSEEEECCCCSSTT
T ss_pred EEEEEEecCCCCchH--HHHHHHHHHHHHHhC-cEEEEECC--CCc--CC-HHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 467888765 3465 677889999999999 87764331 100 01 14456778888888999999834455555
Q ss_pred HHHHHHHHHcCCC
Q 004136 246 IHLFTEANRMGLV 258 (771)
Q Consensus 246 ~~il~~a~~~g~~ 258 (771)
...++++.+.|++
T Consensus 76 ~~~~~~~~~~giP 88 (297)
T 3rot_A 76 SKSLQRANKLNIP 88 (297)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCC
Confidence 7778888888763
No 257
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=51.76 E-value=73 Score=31.23 Aligned_cols=44 Identities=5% Similarity=0.134 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCchHhHHHHHHhhccCCccEEee
Q 004136 84 QAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127 (771)
Q Consensus 84 ~a~~~~~~li~~~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is~ 127 (771)
.+.+.+..++.+.++.+|+-+-.+..+..+..+-+..++|+|..
T Consensus 71 ~~~~i~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi 114 (285)
T 2jfn_A 71 RVVAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGV 114 (285)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECC
T ss_pred HHHHHHHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEeh
Confidence 33444445554478888886544444345666667779999974
No 258
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=51.61 E-value=20 Score=36.43 Aligned_cols=81 Identities=5% Similarity=0.103 Sum_probs=56.7
Q ss_pred CeEEEEEEEeC---CCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh--CCceEEEEEecC
Q 004136 167 WRRVAAIYEDN---VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQAS 241 (771)
Q Consensus 167 w~~v~ii~~~~---~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vIv~~~~~ 241 (771)
-.+|+++..+. +|. ....+.+++++++.| +++.... .... ......+++.+.+ .++|.|++ ...
T Consensus 3 ~~~Ig~i~p~~~~~~f~--~~~~~g~~~~a~~~g-~~~~~~~--~~~~-----~~~~~~~i~~~i~~~~~vDgiIi-~~~ 71 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFW--VSYSQFMQAAARDLG-LDLRILY--AERD-----PQNTLQQARELFQGRDKPDYLML-VNE 71 (350)
T ss_dssp CCEEEEEECSCTTCHHH--HHHHHHHHHHHHHHT-CEEEEEE--CTTC-----HHHHHHHHHHHHHSSSCCSEEEE-ECC
T ss_pred CCEEEEECCCCCCChHH--HHHHHHHHHHHHHcC-CeEEEEE--CCCC-----HHHHHHHHHHHHhcCCCCCEEEE-eCc
Confidence 46889998753 465 677889999999999 8776542 1111 1334566777776 58999999 665
Q ss_pred hhHHHHHHHHHHHcCCC
Q 004136 242 LDMTIHLFTEANRMGLV 258 (771)
Q Consensus 242 ~~~~~~il~~a~~~g~~ 258 (771)
......+++.+.+.|++
T Consensus 72 ~~~~~~~~~~~~~~giP 88 (350)
T 3h75_A 72 QYVAPQILRLSQGSGIK 88 (350)
T ss_dssp SSHHHHHHHHHTTSCCE
T ss_pred hhhHHHHHHHHHhCCCc
Confidence 55677788888888763
No 259
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=51.31 E-value=1.8e+02 Score=28.34 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (771)
..+-.+++..+.++. +.+ +.+.. +....++.+|.+|++|+++....... ..+. ..|+....+.++++...
T Consensus 102 ~~~l~~~l~~f~~~~P~v~--l~l~~--~~~~~~~~~l~~g~~Dlai~~~~~~~---~~l~-~~~L~~~~~~~v~~~~h 172 (313)
T 2h98_A 102 YGLLPEIIYLFRQQNPEIH--IELIE--CGTKDQINALKQGKIDLGFGRLKITD---PAIR-RIMLHKEQLKLAIHKHH 172 (313)
T ss_dssp GTTHHHHHHHHHHHCTTSE--EEEEE--CCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEEETTS
T ss_pred HhHHHHHHHHHHHHCCCeE--EEEEe--CChHHHHHHHHcCCCCEEEEeCCCCC---CCee-EEEeeeCcEEEEEcCCC
Confidence 356788899998887 555 44444 24678999999999999986433221 1222 35788888888887765
No 260
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=50.84 E-value=1e+02 Score=29.85 Aligned_cols=117 Identities=9% Similarity=0.077 Sum_probs=72.5
Q ss_pred EEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcC----CeEEEEcCCchHh
Q 004136 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKE----KVKVIAGMETWEE 109 (771)
Q Consensus 35 I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~----~v~aviGp~~s~~ 109 (771)
=+||++.... ......-..|++.|+++. |.++.. .....+...+.+.+.+++... ++.+|+... ...
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~-----g~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~-d~~ 203 (295)
T 3hcw_A 132 DELIFITEKGNFEVSKDRIQGFETVASQF-----NLDYQI--IETSNEREVILNYMQNLHTRLKDPNIKQAIISLD-AML 203 (295)
T ss_dssp SEEEEEEESSCCHHHHHHHHHHHHHHHHT-----TCEEEE--EEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESS-HHH
T ss_pred ccEEEEcCCccchhHHHHHHHHHHHHHHc-----CCCeeE--EeccCCHHHHHHHHHHHHhhcccCCCCcEEEECC-hHH
Confidence 3688887544 223455677888888774 334442 334457778888888887542 789999743 334
Q ss_pred HHHHHHhhccCC--cc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 110 TAVVAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 110 ~~~v~~~~~~~~--iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
+..+...+.+.+ || +|++... .+.....|.+-.+..+...+++..++.+.
T Consensus 204 A~g~~~al~~~g~~vP~di~vig~D~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 259 (295)
T 3hcw_A 204 HLAILSVLYELNIEIPKDVMTATFNDS----YLTEIASPPQTCIDIKPRMLGQQAGSAIL 259 (295)
T ss_dssp HHHHHHHHHHTTCCTTTTEEEEEECCS----HHHHTSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCceEEEEeCCh----hHHhhCCCCeeEEEECHHHHHHHHHHHHH
Confidence 444555555544 34 5655433 23333446667788888888888888773
No 261
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=50.49 E-value=17 Score=36.43 Aligned_cols=81 Identities=15% Similarity=0.032 Sum_probs=53.4
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHH
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~ 245 (771)
++|+++..+ ++|. ....+.+++.+++.| +++.... +... + ......+++.+.+.+.|.|++...+....
T Consensus 4 ~~Igvi~~~~~~~~~--~~~~~g~~~~~~~~g-~~~~~~~--~~~~---d-~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFF--TSGGNGAQEAGKALG-IDVTYDG--PTEP---S-VSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp CEEEEECSSSSSHHH--HHHHHHHHHHHHHHT-CEEEECC--CSSC---C-HHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred CEEEEEeCCCCChHH--HHHHHHHHHHHHHhC-CEEEEEC--CCCC---C-HHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 578888754 3455 667788888999999 7765321 1111 1 13455677788888999988823444444
Q ss_pred HHHHHHHHHcCC
Q 004136 246 IHLFTEANRMGL 257 (771)
Q Consensus 246 ~~il~~a~~~g~ 257 (771)
...++.+.+.|.
T Consensus 75 ~~~~~~a~~~gi 86 (316)
T 1tjy_A 75 CPALKRAMQRGV 86 (316)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCcC
Confidence 667888888876
No 262
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=49.80 E-value=26 Score=34.17 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=52.2
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEec-ChhH
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQA-SLDM 244 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~-~~~~ 244 (771)
++|+++..+ ++|. ....+.+++++++.| .++..... .. + .......++.+.+.++|.|++ .. ....
T Consensus 3 ~~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~~--~~----~-~~~~~~~~~~l~~~~vdgiI~-~~~~~~~ 71 (290)
T 2fn9_A 3 GKMAIVISTLNNPWF--VVLAETAKQRAEQLG-YEATIFDS--QN----D-TAKESAHFDAIIAAGYDAIIF-NPTDADG 71 (290)
T ss_dssp CEEEEEESCSSSHHH--HHHHHHHHHHHHHTT-CEEEEEEC--TT----C-HHHHHHHHHHHHHTTCSEEEE-CCSCTTT
T ss_pred eEEEEEeCCCCChHH--HHHHHHHHHHHHHcC-CEEEEeCC--CC----C-HHHHHHHHHHHHHcCCCEEEE-ecCChHH
Confidence 468888865 4465 677888999999999 87654321 11 1 133456677777788999988 54 3343
Q ss_pred HHHHHHHHHHcCC
Q 004136 245 TIHLFTEANRMGL 257 (771)
Q Consensus 245 ~~~il~~a~~~g~ 257 (771)
....++.+.+.+.
T Consensus 72 ~~~~~~~~~~~~i 84 (290)
T 2fn9_A 72 SIANVKRAKEAGI 84 (290)
T ss_dssp THHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 4456777777765
No 263
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=49.72 E-value=1.5e+02 Score=29.50 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=73.8
Q ss_pred EEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHHH
Q 004136 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (771)
Q Consensus 35 I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~v 113 (771)
=+||++.... ......-..|++.|+++. |.+ .+......+...+.+.+.+++....+.+|+.... ..+..+
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~-----g~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~nd-~~A~g~ 246 (333)
T 3jvd_A 175 MNIAALVGEESLSTTQERMRGISHAASIY-----GAE--VTFHFGHYSVESGEEMAQVVFNNGLPDALIVASP-RLMAGV 246 (333)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECCH-HHHHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHC-----CCC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECCH-HHHHHH
Confidence 4688887654 233455677888887775 223 2222155678888888999986555789987443 344444
Q ss_pred HHhhccCCc--c----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHH
Q 004136 114 AEIASRVQV--P----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (771)
Q Consensus 114 ~~~~~~~~i--P----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~ 164 (771)
...+.+.|+ | +|++... .+.....|-+-.+..+...+++..++.+..
T Consensus 247 ~~al~~~G~~vP~disvig~D~~----~~~~~~~p~lttv~~~~~~~g~~Av~~L~~ 299 (333)
T 3jvd_A 247 MRAFTRLNVRVPHDVVIGGYDDP----EWYSFVGAGITTFVPPHEEMGKEAVRLLVD 299 (333)
T ss_dssp HHHHHHTTCCTTTTCEEEEESCC----GGGGGSTTSCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCceEEEEECCh----HHHHhcCCCceEEecCHHHHHHHHHHHHHH
Confidence 454454433 3 6766543 344434466677888888899888887743
No 264
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=49.51 E-value=19 Score=34.79 Aligned_cols=81 Identities=10% Similarity=0.013 Sum_probs=54.1
Q ss_pred EEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCC-ceEEEEEec-ChhH
Q 004136 169 RVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ-SRVFIVLQA-SLDM 244 (771)
Q Consensus 169 ~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~-~~vIv~~~~-~~~~ 244 (771)
+|+++..+ ++|. ....+.+++.+++.| .++.....-... + .......++.+.+.+ +|.|++ .. ....
T Consensus 2 ~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~~~~~~----~-~~~~~~~i~~l~~~~~vdgii~-~~~~~~~ 72 (276)
T 3ksm_A 2 KLLLVLKGDSNAYW--RQVYLGAQKAADEAG-VTLLHRSTKDDG----D-IAGQIQILSYHLSQAPPDALIL-APNSAED 72 (276)
T ss_dssp EEEEECSCSSSTHH--HHHHHHHHHHHHHHT-CEEEECCCSSTT----C-HHHHHHHHHHHHHHSCCSEEEE-CCSSTTT
T ss_pred eEEEEeCCCCChHH--HHHHHHHHHHHHHcC-CEEEEECCCCCC----C-HHHHHHHHHHHHHhCCCCEEEE-eCCCHHH
Confidence 57777764 4455 677889999999999 776543211111 1 134556777777778 999998 54 3455
Q ss_pred HHHHHHHHHHcCCC
Q 004136 245 TIHLFTEANRMGLV 258 (771)
Q Consensus 245 ~~~il~~a~~~g~~ 258 (771)
....++.+.+.|++
T Consensus 73 ~~~~~~~~~~~~ip 86 (276)
T 3ksm_A 73 LTPSVAQYRARNIP 86 (276)
T ss_dssp THHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCc
Confidence 66778888888763
No 265
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=48.80 E-value=33 Score=33.46 Aligned_cols=80 Identities=9% Similarity=0.095 Sum_probs=56.2
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChh--
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD-- 243 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~-- 243 (771)
++|+++..+ ++|. ....+.+++.+++.| ..+..... ..+ .......++.+.+.+.|.|++ .....
T Consensus 16 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~~------~~~~~~~~~~l~~~~vdgiIi-~~~~~~~ 84 (298)
T 3tb6_A 16 KTIGVLTTYISDYIF--PSIIRGIESYLSEQG-YSMLLTST-NNN------PDNERRGLENLLSQHIDGLIV-EPTKSAL 84 (298)
T ss_dssp CEEEEEESCSSSTTH--HHHHHHHHHHHHHTT-CEEEEEEC-TTC------HHHHHHHHHHHHHTCCSEEEE-CCSSTTS
T ss_pred ceEEEEeCCCCchHH--HHHHHHHHHHHHHCC-CEEEEEeC-CCC------hHHHHHHHHHHHHCCCCEEEE-ecccccc
Confidence 789999875 4465 778899999999999 77765432 111 134566778888889999998 54321
Q ss_pred --HHHHHHHHHHHcCCC
Q 004136 244 --MTIHLFTEANRMGLV 258 (771)
Q Consensus 244 --~~~~il~~a~~~g~~ 258 (771)
.....++.+.+.|++
T Consensus 85 ~~~~~~~~~~~~~~~iP 101 (298)
T 3tb6_A 85 QTPNIGYYLNLEKNGIP 101 (298)
T ss_dssp CCTTHHHHHHHHHTTCC
T ss_pred cCCcHHHHHHHHhcCCC
Confidence 445677888888763
No 266
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=48.75 E-value=1.4e+02 Score=26.21 Aligned_cols=87 Identities=13% Similarity=0.017 Sum_probs=58.1
Q ss_pred eEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecC----hh
Q 004136 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS----LD 243 (771)
Q Consensus 168 ~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~----~~ 243 (771)
.++.+.....+.- .-....+...++..| +++.+.-.. . .....+..+++.++++|.+ ++. ..
T Consensus 19 ~~vlla~~~gd~H--diG~~~va~~l~~~G-~eVi~lG~~---~-------p~e~lv~aa~~~~~diV~l-S~~~~~~~~ 84 (161)
T 2yxb_A 19 YKVLVAKMGLDGH--DRGAKVVARALRDAG-FEVVYTGLR---Q-------TPEQVAMAAVQEDVDVIGV-SILNGAHLH 84 (161)
T ss_dssp CEEEEEEESSSSC--CHHHHHHHHHHHHTT-CEEECCCSB---C-------CHHHHHHHHHHTTCSEEEE-EESSSCHHH
T ss_pred CEEEEEeCCCCcc--HHHHHHHHHHHHHCC-CEEEECCCC---C-------CHHHHHHHHHhcCCCEEEE-EeechhhHH
Confidence 4555555555533 666888899999999 888653221 1 2456677778889999998 664 35
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEeeCc
Q 004136 244 MTIHLFTEANRMGLVGKDSVWIVTNT 269 (771)
Q Consensus 244 ~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (771)
.+..+++++++.|... --+|+++..
T Consensus 85 ~~~~~i~~L~~~g~~~-i~v~vGG~~ 109 (161)
T 2yxb_A 85 LMKRLMAKLRELGADD-IPVVLGGTI 109 (161)
T ss_dssp HHHHHHHHHHHTTCTT-SCEEEEECC
T ss_pred HHHHHHHHHHhcCCCC-CEEEEeCCC
Confidence 6778888888887632 225666543
No 267
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=48.40 E-value=1.5e+02 Score=28.12 Aligned_cols=118 Identities=11% Similarity=0.011 Sum_probs=73.2
Q ss_pred EEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcC--CeEEEEcCCchHhHH
Q 004136 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKE--KVKVIAGMETWEETA 111 (771)
Q Consensus 35 I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~--~v~aviGp~~s~~~~ 111 (771)
=+|+++.... ......-..|++.++++. |.++... .....+...+.+.+.+++... ++.+|+... ...+.
T Consensus 121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~-d~~a~ 193 (272)
T 3o74_A 121 RSIALIGARPELSVSQARAGGFDEALQGY-----TGEVRRY-QGEAFSRECGQRLMQQLIDDLGGLPDALVTTS-YVLLQ 193 (272)
T ss_dssp SEEEEEEECTTSHHHHHHHHHHHHHTTTC-----CSEEEEE-EESSSSHHHHHHHHHHHHHHHTSCCSEEEESS-HHHHH
T ss_pred cEEEEEecCCCCccHHHHHHHHHHHHHHc-----CCChhee-ecCCCCHHHHHHHHHHHHhcCCCCCcEEEEeC-chHHH
Confidence 3577776543 223344556666666553 3444433 334567888888888888654 488999754 34455
Q ss_pred HHHHhhccCC-cc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 112 VVAEIASRVQ-VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 112 ~v~~~~~~~~-iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
.+...+.+.+ +| +++.... .+.....|.+-.+..+...+++..++.+.
T Consensus 194 g~~~al~~~g~vp~di~vvg~d~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 246 (272)
T 3o74_A 194 GVFDTLQARPVDSRQLQLGTFGDN----QLLDFLPLPVNAMAQQHGQIAATALELAL 246 (272)
T ss_dssp HHHHHHHTSCGGGCCCEEEEESCC----GGGGTSSSCEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccceEEEEeCCh----HHHHhcCCCceEEEeCHHHHHHHHHHHHH
Confidence 5556666666 34 5655533 34444446677788888888888888773
No 268
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=48.03 E-value=71 Score=31.06 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhc-CCeEEEEcCCchHhHHHHHHhhccCCccEEee
Q 004136 84 QAATAAQELINK-EKVKVIAGMETWEETAVVAEIASRVQVPILSF 127 (771)
Q Consensus 84 ~a~~~~~~li~~-~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is~ 127 (771)
...+.+..|. + .++.+|+-+-.+.++..+..+-+..++|+|..
T Consensus 53 ~~~~~~~~L~-~~~g~d~iViACNTas~~~l~~lr~~~~iPVigi 96 (272)
T 1zuw_A 53 YTWELTNYLL-ENHHIKMLVIACNTATAIALDDIQRSVGIPVVGV 96 (272)
T ss_dssp HHHHHHHHHH-HHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHH-hhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcc
Confidence 3344455555 6 78988886544444345666666778998863
No 269
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=47.80 E-value=25 Score=34.91 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=51.1
Q ss_pred EEEEEEEeCC-CCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHH
Q 004136 169 RVAAIYEDNV-YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIH 247 (771)
Q Consensus 169 ~v~ii~~~~~-~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~ 247 (771)
+|+++..+.. |. ....+.+++++++.| .++.... .... + .......++.+.+.++|.|++..........
T Consensus 3 ~Ig~i~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~--~~~~---~-~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~ 73 (313)
T 2h3h_A 3 TIGVIGKSVHPYW--SQVEQGVKAAGKALG-VDTKFFV--PQKE---D-INAQLQMLESFIAEGVNGIAIAPSDPTAVIP 73 (313)
T ss_dssp EEEEECSCSSHHH--HHHHHHHHHHHHHHT-CEEEEEC--CSSS---C-HHHHHHHHHHHHHTTCSEEEECCSSTTTTHH
T ss_pred EEEEEeCCCcHHH--HHHHHHHHHHHHHcC-CEEEEEC--CCCC---C-HHHHHHHHHHHHHcCCCEEEEeCCChHHHHH
Confidence 5777765422 55 677888899999999 7765432 1111 1 1334566777777889999882334444456
Q ss_pred HHHHHHHcCC
Q 004136 248 LFTEANRMGL 257 (771)
Q Consensus 248 il~~a~~~g~ 257 (771)
.++.+.+.|.
T Consensus 74 ~~~~~~~~~i 83 (313)
T 2h3h_A 74 TIKKALEMGI 83 (313)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
Confidence 7778877775
No 270
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=47.74 E-value=28 Score=35.12 Aligned_cols=86 Identities=10% Similarity=0.055 Sum_probs=56.2
Q ss_pred CCCCChhHhhhCCceEEEecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHH-HHHhcCCce
Q 004136 671 PNVTDIQSLKSGNLKVGCVDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKV-FLDKYCKKY 749 (771)
Q Consensus 671 ~~i~~~~dL~~~~~~~g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~-~~~~~c~~l 749 (771)
.+|++++||+ |+|+-+..+......++. .+-....+ ...|.+.+|.+|-+|+.......+.. -..+.++.+
T Consensus 144 kpI~s~~Dlk--GlKiR~~~~~~~~~~~~a-lGa~pv~m-----~~~Evy~ALq~GvvDg~e~~~~~~~~~~~~Ev~ky~ 215 (326)
T 3fxb_A 144 TPVTTCSDLD--EVKFRVMTNPLLVESYKA-FGATPTPL-----PWGEVYGGLQTNVIQGQENPTFFLYSTKIYEVTDYI 215 (326)
T ss_dssp SCCSSGGGST--TCEEEECSCHHHHHHHHH-HTSEEEEC-----CGGGHHHHHHTTSCCEEEEEHHHHHHTTGGGSCSEE
T ss_pred CCCCChHHhC--CCEEEecCCHHHHHHHHH-cCCeeeec-----CHHHHHHHHHcCCcceEecCHHHHHhccHhhhccee
Confidence 5799999999 999988776667777766 33322222 47789999999999999876655421 122335545
Q ss_pred eEee-eeeeceEEEEEec
Q 004136 750 TAIN-TYRFGGLGFVSNI 766 (771)
Q Consensus 750 ~~~~-~~~~~~~g~~~~k 766 (771)
...+ .+. ...+++.+
T Consensus 216 ~~~~~~~~--~~~~~~n~ 231 (326)
T 3fxb_A 216 TYAGHNNF--TTAVMANK 231 (326)
T ss_dssp EECCCCEE--EEEEEEEH
T ss_pred EEcCcccc--ceEEEEeH
Confidence 5544 332 34555554
No 271
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=47.68 E-value=1.6e+02 Score=26.75 Aligned_cols=72 Identities=11% Similarity=0.180 Sum_probs=48.8
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
..+-.+++..+.+++ +.+ +++.. +....++..|.+|++|+++..... .....+. ..++....+.+++++..+
T Consensus 26 ~~~l~~~l~~f~~~~P~v~--l~l~~--~~~~~~~~~l~~g~~Dl~i~~~~~--~~~~~l~-~~~l~~~~~~~v~~~~hp 98 (228)
T 2fyi_A 26 RYSLPEVIKAFRELFPEVR--LELIQ--GTPQEIATLLQNGEADIGIASERL--SNDPQLV-AFPWFRWHHSLLVPHDHP 98 (228)
T ss_dssp HHTHHHHHHHHHHHCTTEE--EEEEE--CCHHHHHHHHHHTSCSEEEESSSS--TTCTTEE-EEEEEEECEEEEEETTCG
T ss_pred HHHHHHHHHHHHHHCCCcE--EEEEe--CCHHHHHHHHHcCCccEEEEeccc--CCCCCce-EEEeeecceEEEecCCCC
Confidence 456778899998887 444 55544 356789999999999999863211 1112232 257888888888887653
No 272
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=47.48 E-value=2.1e+02 Score=27.97 Aligned_cols=61 Identities=8% Similarity=-0.135 Sum_probs=36.7
Q ss_pred CcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEe-eeeeeceEEEEEecCCCC
Q 004136 708 NIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAI-NTYRFGGLGFVSNIIYSH 770 (771)
Q Consensus 708 ~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~-~~~~~~~~g~~~~k~s~~ 770 (771)
++..+.+ ..+..+.+.+|++.+.+.-...+....+..-+ +..+ +.-.....+++++|++++
T Consensus 175 ~~~~~~~-~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~i~k~s~~ 236 (320)
T 4euo_A 175 DIIWWSG-GAQSQQLIASAEAPFGSVWNGRMTALEQSGVK-VETSWAQNITAADSLVVPKGTKN 236 (320)
T ss_dssp GEEEECS-HHHHHHHHHTTSSCEEEEEHHHHHHHHHTTCC-CEEEEEEEEEEEEEEECBTTCSC
T ss_pred ceeEeCC-CchHHHHHHcCCEEEEEeecHHHHHHHhCCCC-eEEEecCceeecceEEEECCCCC
Confidence 3444555 67888999999988877655444333333322 3332 211123457899999986
No 273
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=47.28 E-value=83 Score=28.07 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=48.2
Q ss_pred CCeEEEEEEEeCCCCC-CcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC-CceEEEEEec
Q 004136 166 NWRRVAAIYEDNVYGG-DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQA 240 (771)
Q Consensus 166 ~w~~v~ii~~~~~~g~-~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~~~vIv~~~~ 240 (771)
.--++++|...|+-|. .+.-...+.+.+++.| .++.....++.+. ..+.+.+++..+. ++|+|+. .+
T Consensus 9 ~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G-~~v~~~~iv~Dd~------~~i~~~l~~a~~~~~~DlVit-tG 77 (172)
T 1mkz_A 9 IPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAG-HHVVDKAIVKENR------YAIRAQVSAWIASDDVQVVLI-TG 77 (172)
T ss_dssp CCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTT-CEEEEEEEECSCH------HHHHHHHHHHHHSSSCCEEEE-ES
T ss_pred CCCEEEEEEEeCCCCcccCccHHHHHHHHHHCC-CeEeEEEEeCCCH------HHHHHHHHHHHhcCCCCEEEe-CC
Confidence 3458899988776541 0223567889999999 8888777776544 6788888887765 6999998 54
No 274
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=47.19 E-value=83 Score=30.92 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCchHhHHHHHHhhccCCccEEe
Q 004136 84 QAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (771)
Q Consensus 84 ~a~~~~~~li~~~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is 126 (771)
.+.+.+..|. ++++.+|+-+-.+..+..+..+-+..++|+|.
T Consensus 74 ~~~~~~~~L~-~~g~d~IVIACNTas~~~l~~lr~~~~iPVig 115 (290)
T 2vvt_A 74 FTWEMADFLL-KKRIKMLVIACNTATAVALEEIKAALPIPVVG 115 (290)
T ss_dssp HHHHHHHHHH-TTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHH-HCCCCEEEEeCcchhHHHHHHHHHhCCCCEEc
Confidence 3444455555 67899888654444434566666677899886
No 275
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=46.79 E-value=84 Score=30.60 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCchHhHHHHHHhhccCCccEEe
Q 004136 84 QAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (771)
Q Consensus 84 ~a~~~~~~li~~~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is 126 (771)
...+.+..|. ++++.+|+-+-.+.++..+..+-+..++|+|.
T Consensus 57 ~~~~~~~~L~-~~g~d~IViACNTas~~~l~~lr~~~~iPVig 98 (276)
T 2dwu_A 57 FVFEMVEFLK-QFPLKALVVACNTAAAATLAALQEALSIPVIG 98 (276)
T ss_dssp HHHHHHHHHT-TSCEEEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHH-HCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEe
Confidence 3344455554 78999888654444434565666667899885
No 276
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=46.49 E-value=26 Score=36.30 Aligned_cols=89 Identities=11% Similarity=0.133 Sum_probs=60.8
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEE
Q 004136 157 CIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236 (771)
Q Consensus 157 a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv 236 (771)
.+.++++.++.+++.++++..... .+..+.+.+.+++.| +++.....+..+. +.+.+.+.++.+++.++|+||
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~--~g~~~~v~~~L~~~g-~~~~~~~~~~~~p----~~~~v~~~~~~~~~~~~d~II 93 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQ--CGVVAKVTDKMDAAG-LAWAIYDGVVPNP----TITVVKEGLGVFQNSGADYLI 93 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHH--TTHHHHHHHHHHHTT-CEEEEECBCCSSC----BHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhh--chHHHHHHHHHHHcC-CeEEEECCccCCC----CHHHHHHHHHHHHhcCcCEEE
Confidence 356677777888999998765443 346888999999888 7664322232222 125678888888888999999
Q ss_pred EEec--ChhHHHHHHHHHH
Q 004136 237 VLQA--SLDMTIHLFTEAN 253 (771)
Q Consensus 237 ~~~~--~~~~~~~il~~a~ 253 (771)
- .+ +.-++..++....
T Consensus 94 a-vGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 94 A-IGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp E-EESHHHHHHHHHHHHHH
T ss_pred E-eCChHHHHHHHHHHHHH
Confidence 6 43 4566777776655
No 277
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=46.42 E-value=8.6 Score=22.15 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=15.1
Q ss_pred cchHHHHHHHHHHHhhccC
Q 004136 611 KDQISNILWFAFSTIFFSH 629 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~ 629 (771)
...+..++|++|+.++..+
T Consensus 6 ~~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 6 ALTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHhhHhheecc
Confidence 3468899999999998643
No 278
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=45.68 E-value=13 Score=36.48 Aligned_cols=36 Identities=8% Similarity=0.179 Sum_probs=21.5
Q ss_pred CCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEE
Q 004136 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQI 75 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~ 75 (771)
.++|+|.+-. .....++...++.++..|+.+|++..
T Consensus 36 ~~~i~i~GSs--------s~~p~~~~~a~~f~~~~p~v~v~~~~ 71 (279)
T 4gd5_A 36 TNSVSISGST--------SVGPVMEAEAEAFKTKKPDVSIEINQ 71 (279)
T ss_dssp -CEEEEEECT--------TTHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CCeEEEEEeC--------cHHHHHHHHHHHHHHHCCCceEEEee
Confidence 4678876532 12344555666666666788888764
No 279
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=45.59 E-value=80 Score=30.81 Aligned_cols=122 Identities=12% Similarity=0.075 Sum_probs=73.5
Q ss_pred CcEEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcC---CeEEEEcCCchH
Q 004136 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKE---KVKVIAGMETWE 108 (771)
Q Consensus 33 ~~I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~---~v~aviGp~~s~ 108 (771)
+..+|+++.... ......-..|++-++++.+ .......+ .....+...+.+.+.+++... ++.+|+.....
T Consensus 139 g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g---~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~- 213 (309)
T 2fvy_A 139 GQIQFVLLKGEPGHPDAEARTTYVIKELNDKG---IKTEQLQL-DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA- 213 (309)
T ss_dssp SSEEEEEEECSTTCHHHHHHHHHHHHHHHHTT---CCEEEEEE-EECTTCHHHHHHHHHHHHTSTTGGGCCEEEESSHH-
T ss_pred CceEEEEEEcCCCCccHHHHHHHHHHHHHhcC---CceEEEEE-ecCCCCHHHHHHHHHHHHHhCCCCCccEEEECCch-
Confidence 567899987653 3334566788888887742 12222222 234457888888899998652 68999975443
Q ss_pred hHHHHHHhhcc--C-CccEEeecCCCCCCCccC---CCCceEEEeecCcHHHHHHHHHHHH
Q 004136 109 ETAVVAEIASR--V-QVPILSFAAPAVTPLSMS---RRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 109 ~~~~v~~~~~~--~-~iP~Is~~a~~~~~~l~~---~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
.+..+...+.. . ++++++.... + ... ...|.+..+..+...+++..++.+.
T Consensus 214 ~a~g~~~al~~~g~~di~vig~d~~---~-~~~~~~~~g~~lttv~~~~~~~g~~a~~~l~ 270 (309)
T 2fvy_A 214 MAMGAVEALKAHNKSSIPVFGVDAL---P-EALALVKSGALAGTVLNDANNQAKATFDLAK 270 (309)
T ss_dssp HHHHHHHHHHHTTCTTSCEECSBCC---H-HHHHHHHHTSSCBEEECCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCceEEecCCC---H-HHHHHHHcCCceEEEecCHHHHHHHHHHHHH
Confidence 33333333333 3 6888877654 2 111 1124455666777788887777763
No 280
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=45.45 E-value=1.3e+02 Score=29.37 Aligned_cols=42 Identities=7% Similarity=0.185 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCeEEEEcCCchHhHHHHHHhhccCCccEEee
Q 004136 85 AATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127 (771)
Q Consensus 85 a~~~~~~li~~~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is~ 127 (771)
..+.+..|. +.++.+|+-+-.+..+..+..+-+..++|+|..
T Consensus 73 ~~~~~~~L~-~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi 114 (286)
T 2jfq_A 73 TVEIARKLM-EFDIKMLVIACNTATAVALEYLQKTLSISVIGV 114 (286)
T ss_dssp HHHHHHHHT-TSCCSEEEECCHHHHHHHHHHHHHHCSSEEEES
T ss_pred HHHHHHHHH-HCCCCEEEEeCCchhHHHHHHHHHhCCCCEEec
Confidence 344455554 678988886544444335556666678999863
No 281
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=45.16 E-value=45 Score=33.43 Aligned_cols=89 Identities=10% Similarity=0.016 Sum_probs=54.6
Q ss_pred HHHHHHHcCCeEEEEEEEe----CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCce
Q 004136 158 IADLARKYNWRRVAAIYED----NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (771)
Q Consensus 158 ~~~~l~~~~w~~v~ii~~~----~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~ 233 (771)
.+.-++.-.-+.|+++..+ ++|. ....+.+.+.+++.| ..+..... ... .......++.+.+.+.|
T Consensus 52 ~a~~l~~~~~~~Igvi~~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~--~~~-----~~~~~~~~~~l~~~~vd 121 (338)
T 3dbi_A 52 LARNLSAKSTQTLGLVVTNTLYHGIYF--SELLFHAARMAEEKG-RQLLLADG--KHS-----AEEERQAIQYLLDLRCD 121 (338)
T ss_dssp --------CCSEEEEEECTTTTSTTHH--HHHHHHHHHHHHHTT-CEEEEEEC--TTS-----HHHHHHHHHHHHHTTCS
T ss_pred HHHHhhhCCCCEEEEEecCCcccChhH--HHHHHHHHHHHHHCC-CEEEEEeC--CCC-----hHHHHHHHHHHHhCCCC
Confidence 3344444556789999876 3355 667888999999999 77764331 111 13345567788888999
Q ss_pred EEEEEecChhHHHHHHHHHHHcCC
Q 004136 234 VFIVLQASLDMTIHLFTEANRMGL 257 (771)
Q Consensus 234 vIv~~~~~~~~~~~il~~a~~~g~ 257 (771)
.|++ .........+.+.+.+.+.
T Consensus 122 giIi-~~~~~~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 122 AIMI-YPRFLSVDEIDDIIDAHSQ 144 (338)
T ss_dssp EEEE-CCSSSCHHHHHHHHHHCSS
T ss_pred EEEE-eCCCCChHHHHHHHHcCCC
Confidence 9998 6544334556666777665
No 282
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=44.81 E-value=1.7e+02 Score=26.20 Aligned_cols=92 Identities=5% Similarity=0.007 Sum_probs=50.5
Q ss_pred CCChhHhhhCCceEEE-ecChHHHHHHHHhcCCCC---CCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCc
Q 004136 673 VTDIQSLKSGNLKVGC-VDDSFVKKYLEEVLGFRS---GNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKK 748 (771)
Q Consensus 673 i~~~~dL~~~~~~~g~-~~~s~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~ 748 (771)
.-+++||. +.++-. ..++....++.+...... .......+ .+..++.|..|..-+++-+.....+.......
T Consensus 95 ~~~~~~L~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~g~Gi~~lp~~~~~~~~~~~~l~- 170 (219)
T 3kos_A 95 IQTPADIL--KFPLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDS-SVTMLEAAQAGMGVAIAPVRMFTHLLSSERIV- 170 (219)
T ss_dssp CSSGGGGG--GSCEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESC-HHHHHHHHHTTSCBEEEEGGGCHHHHHTTSSB-
T ss_pred cCCHHHHh--cCceeccCCccCHHHHHHHcCCCCCccccceeEEcc-HHHHHHHHHcCCCeEeehHHhhHHHHHcCCee-
Confidence 34688888 344433 445556666665321111 11234566 88899999999876766555443332222221
Q ss_pred eeEee-eeeeceEEEEEecCCC
Q 004136 749 YTAIN-TYRFGGLGFVSNIIYS 769 (771)
Q Consensus 749 l~~~~-~~~~~~~g~~~~k~s~ 769 (771)
.... ......++++.+|+.+
T Consensus 171 -~~~~~~~~~~~~~l~~~~~~~ 191 (219)
T 3kos_A 171 -QPFLTQIDLGSYWITRLQSRP 191 (219)
T ss_dssp -CCCCCCBCSCEEEEEEETTSC
T ss_pred -ccccCCccCCcEEEEeccccc
Confidence 1222 3334578888888764
No 283
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=44.73 E-value=2.1e+02 Score=28.28 Aligned_cols=145 Identities=11% Similarity=0.049 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHhcCCeEE--EEcCCch-HhHHHHHHhhccC-CccEEeecCCCCCCCccCCCCceEEEeecCcHHHHH
Q 004136 81 DPFQAATAAQELINKEKVKV--IAGMETW-EETAVVAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMK 156 (771)
Q Consensus 81 ~~~~a~~~~~~li~~~~v~a--viGp~~s-~~~~~v~~~~~~~-~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~ 156 (771)
.+..+.+.+.+++ +.++.+ ++-+.-+ .....+...++.. ++.+|.+.+. .+-... ....-..|.
T Consensus 80 P~~~~~~~~~e~i-~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~----Gii~p~-~~~~~~~~~------ 147 (305)
T 2fp4_A 80 PPPFAAAAINEAI-DAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCP----GVINPG-ECKIGIMPG------ 147 (305)
T ss_dssp CHHHHHHHHHHHH-HTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSC----EEEETT-TEEEESSCG------
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCC----eEeccc-ccceeeccc------
Confidence 4567777778887 566665 3444333 2344788889999 9999987754 332211 111112222
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh-CCceEE
Q 004136 157 CIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVF 235 (771)
Q Consensus 157 a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~~~vI 235 (771)
..+.--+|+++.+....+ ..+...+.+.| +-+......-.... .| .++.+.|+.+.+ .+.++|
T Consensus 148 ------~~~~~G~va~vSqSG~l~------~~~~~~~~~~g-~G~S~~vs~G~~~~-~~--~~~~d~l~~~~~Dp~T~~I 211 (305)
T 2fp4_A 148 ------HIHKKGRIGIVSRSGTLT------YEAVHQTTQVG-LGQSLCVGIGGDPF-NG--TDFTDCLEIFLNDPATEGI 211 (305)
T ss_dssp ------GGCCEEEEEEEESCSHHH------HHHHHHHHHTT-CCEEEEEECCSSSS-CS--CCHHHHHHHHHHCTTCCEE
T ss_pred ------cCCCCCCEEEEecchHHH------HHHHHHHHhcC-CCeeEEeccCCCcC-CC--CCHHHHHHHHhcCCCCcEE
Confidence 123446899999876543 44555666666 55555555544320 01 357777777764 478888
Q ss_pred EEEecCh-----hHHHHHHHHHHH
Q 004136 236 IVLQASL-----DMTIHLFTEANR 254 (771)
Q Consensus 236 v~~~~~~-----~~~~~il~~a~~ 254 (771)
++ .... .+++.+++++++
T Consensus 212 ~l-~~E~~g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 212 IL-IGEIGGNAEENAAEFLKQHNS 234 (305)
T ss_dssp EE-EEESSSSHHHHHHHHHHHHSC
T ss_pred EE-EEecCCchhhHHHHHHHHHHH
Confidence 88 6654 468899998765
No 284
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=44.46 E-value=88 Score=30.35 Aligned_cols=41 Identities=12% Similarity=0.257 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCeEEEEcCCchHhHHHHHHhhccCCccEEe
Q 004136 85 AATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (771)
Q Consensus 85 a~~~~~~li~~~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is 126 (771)
+.+.+..|. +.++.+|+-+-.+.++.++..+-+..++|+|.
T Consensus 56 ~~~~~~~L~-~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 56 TWEMTNFLV-DRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp HHHHHHHHH-HTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 334445555 78999888754444444566666777899986
No 285
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=44.44 E-value=36 Score=34.21 Aligned_cols=83 Identities=12% Similarity=0.106 Sum_probs=53.3
Q ss_pred eEEEEEEEe---CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhH
Q 004136 168 RRVAAIYED---NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDM 244 (771)
Q Consensus 168 ~~v~ii~~~---~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~ 244 (771)
.+|+++..+ ++|. ....+.+.+.+++.| ..+.......... .+ .......++.+.+.+.|.|++ ......
T Consensus 44 ~~Igvi~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~~~~~~--~~-~~~~~~~i~~l~~~~vdgiIi-~~~~~~ 116 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYW--VRNIASFEKRLYKLN-INYQLNQVFTRPN--AD-IKQQSLSLMEALKSKSDYLIF-TLDTTR 116 (342)
T ss_dssp EEEEEEECCCSSCCHH--HHHHHHHHHHHHHTT-CCEEEEEEECCTT--CC-HHHHHHHHHHHHHTTCSEEEE-CCSSST
T ss_pred eEEEEEecCCcccHHH--HHHHHHHHHHHHHcC-CeEEEEecCCCCc--cC-HHHHHHHHHHHHhcCCCEEEE-eCChHh
Confidence 478888865 4555 667888999999999 7665432111100 01 133456677777788999999 766544
Q ss_pred HHHHHHHHHHcCC
Q 004136 245 TIHLFTEANRMGL 257 (771)
Q Consensus 245 ~~~il~~a~~~g~ 257 (771)
....++.+.+.|.
T Consensus 117 ~~~~~~~~~~~~i 129 (342)
T 1jx6_A 117 HRKFVEHVLDSTN 129 (342)
T ss_dssp THHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCC
Confidence 4456677777665
No 286
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=44.22 E-value=1.3e+02 Score=29.41 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=41.3
Q ss_pred CCChhHhhhC--CceEEEec------ChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHH
Q 004136 673 VTDIQSLKSG--NLKVGCVD------DSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEK 739 (771)
Q Consensus 673 i~~~~dL~~~--~~~~g~~~------~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~ 739 (771)
|+|++||++. .+.+|+.. |.....+ .+.+++....+.... .....+++++|+.+++..-++.-.
T Consensus 131 l~sisDL~~~~~~~~~g~~~ef~~r~G~G~~~l-~~~YGl~~~~~~~~~--~g~~~~A~~~~~~~v~~~wsp~~~ 202 (284)
T 3r6u_A 131 LETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDF-TKTYGMTFGGTYPMQ--IGLVYDAVKSGKMDIVLAYSTDGR 202 (284)
T ss_dssp CCBSGGGGGGGGGCEEEECTTGGGCSSSSHHHH-HHHHCCCCSEEEECC--GGGHHHHHHHTSCSEEEEETTCHH
T ss_pred CCCHHHHHhhhhceeeccCcccccCchhHHHHH-HHHcCCCcccccccC--HHHHHHHHHcCCCeEEEEeCCCch
Confidence 8999999843 46788854 2333333 333565433343332 334688999999999998887754
No 287
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=43.95 E-value=73 Score=24.51 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=31.9
Q ss_pred EEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEE
Q 004136 144 LIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQ 202 (771)
Q Consensus 144 ~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~ 202 (771)
+.-+.-++...+...+.+++..|.+-..+||+.|. ...+.|..+.+..| .++.
T Consensus 53 ivvvvvddkewaekairfvkslgaqvliiiydqdq-----nrleefsrevrrrg-fevr 105 (134)
T 2l69_A 53 IVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQDQ-----NRLEEFSREVRRRG-FEVR 105 (134)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSCH-----HHHHHHHHHHHHTT-CCEE
T ss_pred EEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCch-----hHHHHHHHHHHhcC-ceEE
Confidence 33445555666666677777777666666665532 23566666666666 5543
No 288
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=43.74 E-value=1.5e+02 Score=25.13 Aligned_cols=86 Identities=14% Similarity=0.069 Sum_probs=56.6
Q ss_pred EEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecCh----hH
Q 004136 169 RVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL----DM 244 (771)
Q Consensus 169 ~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~----~~ 244 (771)
++.+-....+.- .-....+...++..| +++.+.-... ...+.++.+++.++++|.+ ++.. ..
T Consensus 5 ~vvla~~~~d~H--diG~~~v~~~l~~~G-~~Vi~lG~~~----------p~e~~v~~a~~~~~d~v~l-S~~~~~~~~~ 70 (137)
T 1ccw_A 5 TIVLGVIGSDCH--AVGNKILDHAFTNAG-FNVVNIGVLS----------PQELFIKAAIETKADAILV-SSLYGQGEID 70 (137)
T ss_dssp EEEEEEETTCCC--CHHHHHHHHHHHHTT-CEEEEEEEEE----------CHHHHHHHHHHHTCSEEEE-EECSSTHHHH
T ss_pred EEEEEeCCCchh--HHHHHHHHHHHHHCC-CEEEECCCCC----------CHHHHHHHHHhcCCCEEEE-EecCcCcHHH
Confidence 455555554432 666888889999999 9988654321 1455667777789999999 6543 33
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeeCc
Q 004136 245 TIHLFTEANRMGLVGKDSVWIVTNT 269 (771)
Q Consensus 245 ~~~il~~a~~~g~~~~~~~~i~~~~ 269 (771)
...+++++++.|... --+|+++..
T Consensus 71 ~~~~i~~l~~~g~~~-i~v~vGG~~ 94 (137)
T 1ccw_A 71 CKGLRQKCDEAGLEG-ILLYVGGNI 94 (137)
T ss_dssp HTTHHHHHHHTTCTT-CEEEEEESC
T ss_pred HHHHHHHHHhcCCCC-CEEEEECCC
Confidence 566788888887642 235665543
No 289
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=43.45 E-value=32 Score=35.63 Aligned_cols=82 Identities=9% Similarity=0.061 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEE
Q 004136 157 CIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236 (771)
Q Consensus 157 a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv 236 (771)
.+.++++.++ +++.+|++...+ ....+.+.+.+++ | +++.+ ..+.... +.+.+.+.+..+++.++|+||
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~---~~~~~~v~~~L~~-g-~~~~~-~~~~~~p----~~~~v~~~~~~~~~~~~d~II 111 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLF---DALSERIGKSCGD-S-LDIRF-ERFGGEC----CTSEIERVRKVAIEHGSDILV 111 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTH---HHHHHHC-------C-CEEEE-EECCSSC----SHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHcC-CEEEEEECchHH---HHHHHHHHHHHHc-C-CCeEE-EEcCCCC----CHHHHHHHHHHHhhcCCCEEE
Confidence 4566778888 999999877665 3367788888888 8 87733 3333333 125677888888888999988
Q ss_pred EEecCh--hHHHHHHH
Q 004136 237 VLQASL--DMTIHLFT 250 (771)
Q Consensus 237 ~~~~~~--~~~~~il~ 250 (771)
- .+.+ -++..++.
T Consensus 112 a-vGGGs~~D~AK~iA 126 (387)
T 3uhj_A 112 G-VGGGKTADTAKIVA 126 (387)
T ss_dssp E-ESSHHHHHHHHHHH
T ss_pred E-eCCcHHHHHHHHHH
Confidence 7 5544 34444444
No 290
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=43.38 E-value=42 Score=32.73 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCeEEEEcCCchHhHHHHHHhhccCCccEEe
Q 004136 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (771)
Q Consensus 87 ~~~~~li~~~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is 126 (771)
+.+..|. +.++.+|+-+-.+..+..+..+-+..++|+|.
T Consensus 65 ~~~~~L~-~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 65 ELVNFLL-TQNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp HHHHHHH-TTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHH-HCCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 3344454 78999888654444434456666667899886
No 291
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=42.60 E-value=54 Score=31.60 Aligned_cols=117 Identities=12% Similarity=0.055 Sum_probs=73.5
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEcCCchHhHHHHH
Q 004136 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVVA 114 (771)
Q Consensus 36 ~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~s~~~~~v~ 114 (771)
+|+++...... ...-..|++.|+++.+- ++.........+...+.+.+.+++.. .++.+|+.... ..+..+.
T Consensus 120 ~i~~i~~~~~~-~~~R~~gf~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~a~g~~ 192 (280)
T 3gyb_A 120 HIAHLRVGSGA-GLRRFESFEATMRAHGL-----EPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSND-ITAIGAL 192 (280)
T ss_dssp SEEEECCSSHH-HHHHHHHHHHHHHHTTC-----CCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESSH-HHHHHHH
T ss_pred eEEEEeCCCch-HHHHHHHHHHHHHHcCc-----CCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECCh-HHHHHHH
Confidence 58888766544 56667888888877532 22222245567788888888888854 46889997544 3344444
Q ss_pred HhhccCC------ccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 115 EIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 115 ~~~~~~~------iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
..+.+.+ +.+|+.... + +.....|.+..+..+...+++..++.+.
T Consensus 193 ~al~~~g~~vP~di~vvg~d~~---~-~~~~~~p~lttv~~~~~~~g~~av~~l~ 243 (280)
T 3gyb_A 193 GAARELGLRVPEDLSIIGYDNT---P-LAQTRLINLTTIDDNSIGVGYNAALLLL 243 (280)
T ss_dssp HHHHHHTCCTTTTCEEEEESCC---H-HHHSTTTCCCEEECCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCeeEEEEECCc---h-HhhccCCCceEEecCHHHHHHHHHHHHH
Confidence 4444433 447776644 2 3333345566777787888888777763
No 292
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=42.46 E-value=43 Score=32.29 Aligned_cols=80 Identities=10% Similarity=-0.006 Sum_probs=55.6
Q ss_pred CCeEEEEEEEeC--CCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChh
Q 004136 166 NWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (771)
Q Consensus 166 ~w~~v~ii~~~~--~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~ 243 (771)
+-++|+++..+. +|. ....+.+.+++++.| ..+..... ..+ .......++.+.+.+.|.|++ .....
T Consensus 6 ~s~~Igvi~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~~-~~~------~~~~~~~~~~l~~~~vdgiIi-~~~~~ 74 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFS--TELFKGISSILESRG-YIGVLFDA-NAD------IEREKTLLRAIGSRGFDGLIL-QSFSN 74 (276)
T ss_dssp CCCEEEEEESCTTSHHH--HHHHHHHHHHHHTTT-CEEEEEEC-TTC------HHHHHHHHHHHHTTTCSEEEE-ESSCC
T ss_pred CCcEEEEEeCCCCchHH--HHHHHHHHHHHHHCC-CEEEEEeC-CCC------HHHHHHHHHHHHhCCCCEEEE-ecCCc
Confidence 446789988753 355 677888999999999 87765331 111 134566778888889999998 55444
Q ss_pred HHHHHHHHHHHcCCC
Q 004136 244 MTIHLFTEANRMGLV 258 (771)
Q Consensus 244 ~~~~il~~a~~~g~~ 258 (771)
...++.+.+.|++
T Consensus 75 --~~~~~~l~~~~iP 87 (276)
T 3jy6_A 75 --PQTVQEILHQQMP 87 (276)
T ss_dssp --HHHHHHHHTTSSC
T ss_pred --HHHHHHHHHCCCC
Confidence 6677888877763
No 293
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=41.75 E-value=34 Score=33.67 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=51.8
Q ss_pred HHHHHHHcCCeEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEE
Q 004136 158 IADLARKYNWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (771)
Q Consensus 158 ~~~~l~~~~w~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vI 235 (771)
.+.-++.-+-+.|+++..+ ++|. ....+.+.+.+++.| ..+..... ..+. ......++.+.+.+.|.|
T Consensus 6 ~Ar~L~~~~s~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~~~------~~~~~~~~~l~~~~vdgi 75 (303)
T 3kke_A 6 RARALRHSRSGTIGLIVPDVNNAVF--ADMFSGVQMAASGHS-TDVLLGQI-DAPP------RGTQQLSRLVSEGRVDGV 75 (303)
T ss_dssp -----------CEEEEESCTTSTTH--HHHHHHHHHHHHHTT-CCEEEEEC-CSTT------HHHHHHHHHHHSCSSSEE
T ss_pred HHHHHhhCCCCEEEEEeCCCcChHH--HHHHHHHHHHHHHCC-CEEEEEeC-CCCh------HHHHHHHHHHHhCCCcEE
Confidence 3444444455679999875 3466 778899999999999 77764321 1111 345667888888899999
Q ss_pred EEEecChhHHHHHHHHHHHcCC
Q 004136 236 IVLQASLDMTIHLFTEANRMGL 257 (771)
Q Consensus 236 v~~~~~~~~~~~il~~a~~~g~ 257 (771)
++ ..........++.+.+ ++
T Consensus 76 I~-~~~~~~~~~~~~~l~~-~i 95 (303)
T 3kke_A 76 LL-QRREDFDDDMLAAVLE-GV 95 (303)
T ss_dssp EE-CCCTTCCHHHHHHHHT-TS
T ss_pred EE-ecCCCCcHHHHHHHhC-CC
Confidence 98 5433322225666666 65
No 294
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=41.38 E-value=66 Score=33.47 Aligned_cols=89 Identities=10% Similarity=0.122 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEE
Q 004136 157 CIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236 (771)
Q Consensus 157 a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv 236 (771)
.+.++++.++.+++.+|+++..... .+..+.+.+.+++.| +++.. |+.....+ +.+.+...+..+++.++|+||
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~-~g~~~~v~~~L~~~g-~~~~~---f~~v~~~p-~~~~v~~~~~~~~~~~~D~II 106 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKK-NGVYDQVVDSLKKHG-IEWVE---VSGVKPNP-VLSKVHEAVEVAKKEKVEAVL 106 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHH-SSHHHHHHHHHHHTT-CEEEE---ECCCCSSC-BHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHcCCCeEEEEECchHHhh-ccHHHHHHHHHHHcC-CeEEE---ecCccCCC-CHHHHHHHHHHHHhcCCCEEE
Confidence 4566777788899999987543320 235788899998888 76642 32211111 125678888888888999999
Q ss_pred EEec--ChhHHHHHHHHH
Q 004136 237 VLQA--SLDMTIHLFTEA 252 (771)
Q Consensus 237 ~~~~--~~~~~~~il~~a 252 (771)
- .+ +.-++..++...
T Consensus 107 a-vGGGsviD~AK~iA~~ 123 (407)
T 1vlj_A 107 G-VGGGSVVDSAKAVAAG 123 (407)
T ss_dssp E-EESHHHHHHHHHHHHH
T ss_pred E-eCChhHHHHHHHHHHH
Confidence 6 43 445666666654
No 295
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=41.13 E-value=70 Score=29.03 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=47.5
Q ss_pred CCeEEEEEEEeCC--CCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEec
Q 004136 166 NWRRVAAIYEDNV--YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQA 240 (771)
Q Consensus 166 ~w~~v~ii~~~~~--~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~ 240 (771)
.--+++||...|+ .|..+.....+.+.+++.| .++.....++.+. ..+.+.+++....++|+|+. .+
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G-~~v~~~~iv~Dd~------~~I~~al~~a~~~~~DlVIt-tG 97 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAG-FVVDGVVAVEADE------VDIRNALNTAVIGGVDLVVS-VG 97 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTT-EEEEEEEEECSCH------HHHHHHHHHHHHTTCSEEEE-ES
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCC-CEEEEEEEeCCCH------HHHHHHHHHHHhCCCCEEEE-CC
Confidence 4457888887653 1211445778899999999 9888877776554 66888888775557999998 54
No 296
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=41.06 E-value=65 Score=28.51 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=44.7
Q ss_pred EEEEEEEeCC--CC-CCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC-CceEEEEEec
Q 004136 169 RVAAIYEDNV--YG-GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQA 240 (771)
Q Consensus 169 ~v~ii~~~~~--~g-~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~~~vIv~~~~ 240 (771)
++++|...|+ .| ..+.-...+.+.+++.| .++.....++.+. ..+.+.+++..+. ++|+|+. .+
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G-~~v~~~~iv~Dd~------~~i~~~l~~~~~~~~~DlVit-tG 70 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGP-FEVAAYELVPDEP------PMIKKVLRLWADREGLDLILT-NG 70 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSS-EEEEEEEEECSCH------HHHHHHHHHHHHTSCCSEEEE-ES
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCC-CeEeEEEEcCCCH------HHHHHHHHHHHhcCCCCEEEE-cC
Confidence 5677776543 11 00344677899999999 8888777776554 6788888887764 7999998 54
No 297
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=40.70 E-value=1.9e+02 Score=27.56 Aligned_cols=116 Identities=11% Similarity=0.071 Sum_probs=68.8
Q ss_pred EEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc--CCeEEEEcCCchHhHHH
Q 004136 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK--EKVKVIAGMETWEETAV 112 (771)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~--~~v~aviGp~~s~~~~~ 112 (771)
+||++.... ......-..|++.|+++. |.++. +.....+...+.+.+.+++.. .++.+|+.... ..+..
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~-----g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d-~~a~g 191 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRF-----GIPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFND-EMAIG 191 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHT-----TCCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEESSH-HHHHH
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHc-----CCCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEcCh-HHHHH
Confidence 577776543 223345567888888764 23444 334455778888888888854 47899997543 44555
Q ss_pred HHHhhccCC--cc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 113 VAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 113 v~~~~~~~~--iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
+...+.+.+ +| ++++... .+.....|.+..+..+...++...++.+.
T Consensus 192 ~~~al~~~g~~vP~di~vvg~d~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 244 (277)
T 3cs3_A 192 VYKYVAETNYQMGKDIRIIGFDNS----ELGAFVQPRLATIAYSKHRWGMVAAEKII 244 (277)
T ss_dssp HHHHHTTSSCCBTTTEEEECSSCC----HHHHHSSSCCBEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcEEEEEeCCc----HHHhccCCceeEEecCHHHHHHHHHHHHH
Confidence 555566554 34 4544432 22221234455666777778887777663
No 298
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=40.62 E-value=34 Score=31.00 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=42.9
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (771)
..+-.+++..+.++. +.+ +.+...+ .+.+|.+|++|+++....... ..+. +.++....+.+++++..
T Consensus 19 ~~~l~~~l~~f~~~~P~v~--l~i~~~~-----~~~~l~~g~~D~~i~~~~~~~---~~~~-~~~l~~~~~~~v~~~~~ 86 (213)
T 3hhf_B 19 LHLLAPLAAKFNERYPHIR--LSLVSSE-----GYINLIERKVDIALRAGELDD---SGLR-ARHLFDSRFRVIASPEY 86 (213)
T ss_dssp HHTHHHHHHHHHHHCTTEE--EEEECCS-----TTHHHHTTSSSEEEECC--CC---SSEE-EEEEEEECEEEEECHHH
T ss_pred HHHHHHHHHHHHHHCCCcE--EEEEeCC-----cHHHHHhCCccEEEEEecCCC---ccce-EEeeecceEEEEeCHHH
Confidence 356778899998887 555 4433221 244588999999987543322 2232 36788889999887554
No 299
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=40.50 E-value=29 Score=34.43 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=32.2
Q ss_pred CCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEE
Q 004136 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVI 101 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~av 101 (771)
..+|+||+. ... . .....++ +.+.+. |++|+++..++...+..|+. ..++++-
T Consensus 38 ~~~i~IG~~-~~~---~-~~~~~~~---~~~~~~--G~~Ve~~~f~~~~~~~~AL~-------~G~iD~~ 90 (295)
T 1p99_A 38 DKKVTIGVA-SND---T-KAWEKVK---ELAKKD--DIDVEIKHFSDYNLPNKALN-------DGDIDMN 90 (295)
T ss_dssp --CEEEEES-SSC---C-HHHHHHH---HHHGGG--TCCEEEEECSSTTSHHHHHH-------TTSSSEE
T ss_pred CCeEEEEEe-CCc---H-HHHHHHH---HHHHHc--CCeEEEEEeCChHHHHHHHH-------cCCCCEE
Confidence 457999998 322 1 2222222 233333 79999999998888877765 4556653
No 300
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=40.39 E-value=43 Score=32.77 Aligned_cols=80 Identities=11% Similarity=0.059 Sum_probs=52.4
Q ss_pred CCeEEEEEEE----e--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEe
Q 004136 166 NWRRVAAIYE----D--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQ 239 (771)
Q Consensus 166 ~w~~v~ii~~----~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~ 239 (771)
+-+.|+++.. + ++|. ....+.+.+.+++.| ..+.....-. . ......++.+.+.+.|.|++ .
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~~~--~------~~~~~~~~~l~~~~vdGiIi-~ 72 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTF--LEMISWIGIELGKRG-LDLLLIPDEP--G------EKYQSLIHLVETRRVDALIV-A 72 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHH--HHHHHHHHHHHHHTT-CEEEEEEECT--T------CCCHHHHHHHHHTCCSEEEE-C
T ss_pred ccceEEEEecCCCccccChhH--HHHHHHHHHHHHHCC-CEEEEEeCCC--h------hhHHHHHHHHHcCCCCEEEE-e
Confidence 4467899887 2 3455 667888999999999 8776544321 1 12345566677778999998 5
Q ss_pred cChhHHHHHHHHHHHcCCC
Q 004136 240 ASLDMTIHLFTEANRMGLV 258 (771)
Q Consensus 240 ~~~~~~~~il~~a~~~g~~ 258 (771)
...... ..++.+.+.|++
T Consensus 73 ~~~~~~-~~~~~l~~~~iP 90 (294)
T 3qk7_A 73 HTQPED-FRLQYLQKQNFP 90 (294)
T ss_dssp SCCSSC-HHHHHHHHTTCC
T ss_pred CCCCCh-HHHHHHHhCCCC
Confidence 433222 567777777763
No 301
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=39.90 E-value=65 Score=31.21 Aligned_cols=86 Identities=8% Similarity=0.028 Sum_probs=50.4
Q ss_pred HHHHHcCCeEEEEEEEe----CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEE
Q 004136 160 DLARKYNWRRVAAIYED----NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (771)
Q Consensus 160 ~~l~~~~w~~v~ii~~~----~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vI 235 (771)
.-++.-+-.+|+++..+ ++|. ....+.+++++++.| .++.... ... + .......++.+.+.+.|.|
T Consensus 12 r~L~~~~~~~Ig~i~~~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~---~~~---~-~~~~~~~~~~l~~~~vdgi 81 (296)
T 3brq_A 12 RNLSAKSTQTLGLVVTNTLYHGIYF--SELLFHAARMAEEKG-RQLLLAD---GKH---S-AEEERQAIQYLLDLRCDAI 81 (296)
T ss_dssp -------CCEEEEEECGGGCC--CH--HHHHHHHHHHHHHTT-CEEEEEC---CTT---S-HHHHHHHHHHHHHTTCSEE
T ss_pred HHhhcCCCceEEEEeCCcccCCchH--HHHHHHHHHHHHHCC-CEEEEEe---CCC---C-HHHHHHHHHHHHhcCCCEE
Confidence 33444455689999865 3466 677889999999999 7765421 111 1 1334566777777889998
Q ss_pred EEEecChhHHHHHHHHHHH-cCC
Q 004136 236 IVLQASLDMTIHLFTEANR-MGL 257 (771)
Q Consensus 236 v~~~~~~~~~~~il~~a~~-~g~ 257 (771)
++ ...... ...++.+.+ .+.
T Consensus 82 i~-~~~~~~-~~~~~~l~~~~~i 102 (296)
T 3brq_A 82 MI-YPRFLS-VDEIDDIIDAHSQ 102 (296)
T ss_dssp EE-ECSSSC-HHHHHHHHHTCSS
T ss_pred EE-ecCCCC-hHHHHHHHhcCCC
Confidence 88 543222 244566666 565
No 302
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=38.82 E-value=66 Score=30.86 Aligned_cols=127 Identities=12% Similarity=0.149 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCchHhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHH-HH
Q 004136 84 QAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIAD-LA 162 (771)
Q Consensus 84 ~a~~~~~~li~~~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~-~l 162 (771)
...+.+..|. +.++.+|+-+-.+..+..+..+-+..++|+|... .+.++ .+
T Consensus 50 ~~~~~~~~L~-~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~---------------------------e~~~~~A~ 101 (254)
T 1b73_A 50 YSLECAGFLK-DKGVDIIVVACNTASAYALERLKKEINVPVFGVI---------------------------EPGVKEAL 101 (254)
T ss_dssp HHHHHHHHHH-TTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESH---------------------------HHHHHHHH
T ss_pred HHHHHHHHHH-HCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeee---------------------------HHHHHHHH
Confidence 3444555555 6889988865444432345555555688888532 11111 12
Q ss_pred HHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCC-CCC----C---chHHHHHHHHHhhhCCceE
Q 004136 163 RKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPIS-SIS----D---PKEAVRGELKKVQDKQSRV 234 (771)
Q Consensus 163 ~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~-~~~----d---~~~~~~~~l~~l~~~~~~v 234 (771)
+..+.++|+++......- ...+++.++..| .++.... .+... ... + ....+.+.++++.+. +|+
T Consensus 102 ~~~~~~rigVlaT~~T~~-----~~~y~~~l~~~g-~~v~~~~-~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~ 173 (254)
T 1b73_A 102 KKSRNKKIGVIGTPATVK-----SGAYQRKLEEGG-ADVFAKA-CPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDT 173 (254)
T ss_dssp HHCSSCEEEEEECHHHHH-----HCHHHHHHHTTS-CEEEEEE-CCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSE
T ss_pred HccCCCEEEEEEChHHhh-----hHHHHHHHHcCC-CEEEecC-CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCE
Confidence 334668999998764321 223455566677 7764211 11110 000 1 112455566666666 999
Q ss_pred EEEEecCh-hHHHH
Q 004136 235 FIVLQASL-DMTIH 247 (771)
Q Consensus 235 Iv~~~~~~-~~~~~ 247 (771)
||+ .|.. .....
T Consensus 174 IIL-GCT~~p~l~~ 186 (254)
T 1b73_A 174 LIL-GCTHYPLLKK 186 (254)
T ss_dssp EEE-CCCCTTCCHH
T ss_pred EEE-CccChHHHHH
Confidence 999 5544 44333
No 303
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=38.69 E-value=45 Score=32.36 Aligned_cols=79 Identities=11% Similarity=0.142 Sum_probs=50.9
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEec-ChhH
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQA-SLDM 244 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~-~~~~ 244 (771)
++|+++..+ ++|. ....+.+.+.+++.| ..+..... .. + ...-...++.+.+.+.|.|++ .. ....
T Consensus 2 ~~Igvi~~~~~~~f~--~~~~~gi~~~~~~~g-~~~~~~~~--~~----~-~~~~~~~i~~l~~~~vdgiIi-~~~~~~~ 70 (283)
T 2ioy_A 2 KTIGLVISTLNNPFF--VTLKNGAEEKAKELG-YKIIVEDS--QN----D-SSKELSNVEDLIQQKVDVLLI-NPVDSDA 70 (283)
T ss_dssp CEEEEEESCSSSHHH--HHHHHHHHHHHHHHT-CEEEEEEC--TT----C-HHHHHHHHHHHHHTTCSEEEE-CCSSTTT
T ss_pred eEEEEEecCCCCHHH--HHHHHHHHHHHHhcC-cEEEEecC--CC----C-HHHHHHHHHHHHHcCCCEEEE-eCCchhh
Confidence 367888764 3455 667888899999999 77654321 11 1 123445677777788999888 54 3333
Q ss_pred HHHHHHHHHHcCC
Q 004136 245 TIHLFTEANRMGL 257 (771)
Q Consensus 245 ~~~il~~a~~~g~ 257 (771)
....++.+.+.|.
T Consensus 71 ~~~~~~~~~~~~i 83 (283)
T 2ioy_A 71 VVTAIKEANSKNI 83 (283)
T ss_dssp THHHHHHHHHTTC
T ss_pred hHHHHHHHHHCCC
Confidence 3456777777775
No 304
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=37.71 E-value=25 Score=34.70 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=49.8
Q ss_pred ccchHHHHHHHHHH---C---CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccce--eeeec-cc-ceeeccE
Q 004136 488 DGFSIELFRLVVDH---L---NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRT--EYVEF-TQ-PYAESGF 557 (771)
Q Consensus 488 ~G~~~~l~~~~a~~---l---~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~--~~~~f-s~-p~~~~~~ 557 (771)
..+..+++..+.++ . +.+ +.+.. ++...++..|.+|++|+++..-....+.. +.+.+ .. |+....+
T Consensus 32 ~~~lp~ll~~F~~~~~~~~~P~v~--v~l~~--~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~~d~l 107 (294)
T 3cvg_A 32 SGLVKELADAFIKSKVDSGSAPFK--VAWYK--SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAFRDHF 107 (294)
T ss_dssp HTHHHHHHHHHHHHHHSCC---CE--EEEEE--CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEEEEEE
T ss_pred HHHHHHHHHHHHhhhcccCCCCeE--EEEEe--CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEEeccE
Confidence 45778899999998 7 766 44444 35678999999999999876432211110 11112 24 8888899
Q ss_pred EEEEecCCC
Q 004136 558 SMIVPAKQE 566 (771)
Q Consensus 558 ~~~v~~~~~ 566 (771)
.++++...+
T Consensus 108 vlv~~~~hp 116 (294)
T 3cvg_A 108 MLIGPPSNP 116 (294)
T ss_dssp EEEECTTCT
T ss_pred EEEecCCCh
Confidence 999987664
No 305
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=37.60 E-value=3.1e+02 Score=27.01 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=74.5
Q ss_pred EEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCC---C-CHHHHHHHHHHHHhcCCeEEEEcCCchHhH
Q 004136 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN---R-DPFQAATAAQELINKEKVKVIAGMETWEET 110 (771)
Q Consensus 35 I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~---~-~~~~a~~~~~~li~~~~v~aviGp~~s~~~ 110 (771)
-.|+.+|..++ .+...+|+.|..++ ||..+.+...++. + +....++...... .+.++=.+. .
T Consensus 37 k~la~lF~e~S---TRTR~SFe~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~---D~iviR~~~----~ 102 (307)
T 3tpf_A 37 KTLAMIFEKNS---TRTRMAFELAITEL----GGKALFLSSNDLQLSRGEPVKDTARVIGAMV---DFVMMRVNK----H 102 (307)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEECTTTCCTTTSSCHHHHHHHHHHHS---SEEEEECSC----H
T ss_pred CEEEEEecCCC---cchHHhHHHHHHHc----CCeEEEcCcccccCCCCCCHHHHHHHHHHhC---CEEEEecCC----h
Confidence 45888887763 77889999999998 4445555433322 1 2334444444442 233333332 2
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHH---HHcC----CeEEEEEEEeCCCCCCc
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN----WRRVAAIYEDNVYGGDS 183 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l---~~~~----w~~v~ii~~~~~~g~~~ 183 (771)
..+..+++..++|+|..+.. ...| .+++++++ +++| ..+++++.+ + .
T Consensus 103 ~~~~~lA~~~~vPVINag~~--------~~HP------------tQaLaDl~Ti~e~~g~l~~gl~va~vGD----~--~ 156 (307)
T 3tpf_A 103 ETLLEFARYSKAPVINALSE--------LYHP------------TQVLGDLFTIKEWNKMQNGIAKVAFIGD----S--N 156 (307)
T ss_dssp HHHHHHHHHCSSCEEEEECS--------SCCH------------HHHHHHHHHHHHTTCCGGGCCEEEEESC----S--S
T ss_pred HHHHHHHHhCCCCEEeCCCC--------CcCc------------HHHHHHHHHHHHHhCCCCCCCEEEEEcC----C--C
Confidence 34445566778999976632 1222 34566654 4443 446777653 2 4
Q ss_pred chHHHHHHHHhccCCeEEEE
Q 004136 184 GKLALLAEALQNVSSSEIQS 203 (771)
Q Consensus 184 ~~~~~l~~~~~~~g~~~i~~ 203 (771)
..+..+...+...| .++..
T Consensus 157 ~va~Sl~~~~~~~G-~~v~~ 175 (307)
T 3tpf_A 157 NMCNSWLITAAILG-FEISI 175 (307)
T ss_dssp HHHHHHHHHHHHHT-CEEEE
T ss_pred ccHHHHHHHHHHcC-CEEEE
Confidence 46777778888888 66544
No 306
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=37.42 E-value=1.1e+02 Score=27.42 Aligned_cols=68 Identities=9% Similarity=-0.034 Sum_probs=47.7
Q ss_pred cCCeEEEEEEEeCC------C-C-CCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC-CceEE
Q 004136 165 YNWRRVAAIYEDNV------Y-G-GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVF 235 (771)
Q Consensus 165 ~~w~~v~ii~~~~~------~-g-~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~~~vI 235 (771)
+.--++++|...|. . | ..+.....+.+.+++.| .++.....++.+. ..+.+.+++..+. ++|+|
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G-~~v~~~~iv~Dd~------~~I~~al~~a~~~~~~DlV 85 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENG-HKIIGYSLVPDDK------IKILKAFTDALSIDEVDVI 85 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTT-CEEEEEEEECSCH------HHHHHHHHHHHTCTTCCEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCC-CEEEEEEEeCCCH------HHHHHHHHHHHhcCCCCEE
Confidence 45568888888752 1 2 11344677889999999 8888777666554 6788888877654 58999
Q ss_pred EEEec
Q 004136 236 IVLQA 240 (771)
Q Consensus 236 v~~~~ 240 (771)
+. .+
T Consensus 86 it-tG 89 (178)
T 2pjk_A 86 IS-TG 89 (178)
T ss_dssp EE-ES
T ss_pred EE-CC
Confidence 98 54
No 307
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=37.41 E-value=57 Score=33.20 Aligned_cols=97 Identities=12% Similarity=0.187 Sum_probs=61.9
Q ss_pred ceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHH
Q 004136 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (771)
Q Consensus 142 p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~ 221 (771)
|+-+...+... ..+.++++.++.+++.+|++...+ ....+.+.+.+++.| +++......+..+ .+.+.
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~---~~~~~~v~~~L~~~g-~~~~~~~~~~~~~-----~~~v~ 79 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIY---ELFGETIEKSIKSSN-IEIEAVETVKNID-----FDEIG 79 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHH---HHHHHHHHHHHHTTT-CEEEEEEEECCCB-----HHHHH
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHH---HHHHHHHHHHHHHcC-CeEEEEecCCCCC-----HHHHH
Confidence 44445555432 235677777888899999977554 445688888898888 7765332123222 24566
Q ss_pred HHHHHhhhCCceEEEEEec--ChhHHHHHHHHH
Q 004136 222 GELKKVQDKQSRVFIVLQA--SLDMTIHLFTEA 252 (771)
Q Consensus 222 ~~l~~l~~~~~~vIv~~~~--~~~~~~~il~~a 252 (771)
+. +.+++.++|+||- .+ ..-++..++...
T Consensus 80 ~~-~~~~~~~~d~IIa-vGGGsv~D~aK~vA~~ 110 (354)
T 3ce9_A 80 TN-AFKIPAEVDALIG-IGGGKAIDAVKYMAFL 110 (354)
T ss_dssp HH-HTTSCTTCCEEEE-EESHHHHHHHHHHHHH
T ss_pred HH-HHhhhcCCCEEEE-ECChHHHHHHHHHHhh
Confidence 66 7777889999996 44 345666666533
No 308
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=37.26 E-value=2.6e+02 Score=27.57 Aligned_cols=120 Identities=11% Similarity=0.063 Sum_probs=71.5
Q ss_pred EEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEcCCchHhHHHHH
Q 004136 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVVA 114 (771)
Q Consensus 36 ~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~s~~~~~v~ 114 (771)
+||++.+........-..|++.|+++.+-... ...++ .....+...+.+.+.+++.. .++.+|+.... ..+..+.
T Consensus 180 ~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~--~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD-~~A~g~~ 255 (339)
T 3h5o_A 180 RIGFLGAQLDERVMKRLDGYRAALDAADCRDA--GLEWL-DPQPSSMQMGADMLDRALAERPDCDALFCCND-DLAIGAL 255 (339)
T ss_dssp SEEEEEESCCHHHHHHHHHHHHHHHHTTCCCG--GGEEE-ECSCCCHHHHHHHHHHHHHHCTTCCEEEESSH-HHHHHHH
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHCCCCCC--ChheE-ecCCCCHHHHHHHHHHHHcCCCCCcEEEECCh-HHHHHHH
Confidence 47777655433334556778878777543211 12222 24556777888888888854 47889997443 3444444
Q ss_pred HhhccCC--cc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 115 EIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 115 ~~~~~~~--iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
..+.+.| || ++++... .+.....|-+-.+..+...+++..++++.
T Consensus 256 ~al~~~G~~vP~disvvgfD~~----~~~~~~~p~lttv~~~~~~~g~~Av~~L~ 306 (339)
T 3h5o_A 256 ARSQQLGIAVPERLAIAGFNDL----QPAAWCTPPLTTVATPRRDIGVHAAKALL 306 (339)
T ss_dssp HHHHHTTCCTTTTCEEECSBCC----GGGTTSSSCCBEEECCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCEEEEEECCH----HHHhccCCCceEEEeCHHHHHHHHHHHHH
Confidence 5554443 33 5555432 33443446667778888888888888773
No 309
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=37.00 E-value=87 Score=32.06 Aligned_cols=90 Identities=8% Similarity=-0.014 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEE
Q 004136 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (771)
Q Consensus 156 ~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vI 235 (771)
..+.++++.++ +++.+|++...... .+..+.+.+.+++.| +++.....+..+. +.+.+.+.++.+++.++|+|
T Consensus 30 ~~l~~~l~~~g-~~~liVtd~~~~~~-~g~~~~v~~~L~~~g-~~~~~~~~~~~~p----~~~~v~~~~~~~~~~~~d~I 102 (371)
T 1o2d_A 30 EKRGNIIDLLG-KRALVVTGKSSSKK-NGSLDDLKKLLDETE-ISYEIFDEVEENP----SFDNVMKAVERYRNDSFDFV 102 (371)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGT-SSHHHHHHHHHHHTT-CEEEEEEEECSSC----BHHHHHHHHHHHTTSCCSEE
T ss_pred HHHHHHHHHcC-CEEEEEECchHHhh-ccHHHHHHHHHHHcC-CeEEEeCCccCCC----CHHHHHHHHHHHHhcCCCEE
Confidence 34556677777 89999998754320 336788999999888 7654322233322 12568888888888899999
Q ss_pred EEEec--ChhHHHHHHHHHH
Q 004136 236 IVLQA--SLDMTIHLFTEAN 253 (771)
Q Consensus 236 v~~~~--~~~~~~~il~~a~ 253 (771)
|- .+ +.-++..++....
T Consensus 103 Ia-vGGGsv~D~AK~iA~~~ 121 (371)
T 1o2d_A 103 VG-LGGGSPMDFAKAVAVLL 121 (371)
T ss_dssp EE-EESHHHHHHHHHHHHHT
T ss_pred EE-eCChHHHHHHHHHHHHH
Confidence 96 43 3456666666553
No 310
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=36.79 E-value=63 Score=33.95 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=11.8
Q ss_pred CcchhHHHHHHHHHHHhhCcccccccCC-----CCCCCcEEEEEEEeCC
Q 004136 1 MNRFFFLVLIIASELVFVSPGVESASTN-----VNIEEVTKIGAIVDAN 44 (771)
Q Consensus 1 m~~~~~~l~~~~~~~~l~~~~~~~~~~~-----~~~~~~I~IG~i~p~s 44 (771)
|||++.+++++++++++.+|........ ....+.++|..+.+.+
T Consensus 1 m~~~~~~l~~~l~~~~l~~c~~~~~~~~~~~~~~~~~~~~~i~~iSD~H 49 (443)
T 2xmo_A 1 MIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVH 49 (443)
T ss_dssp --------------------------------CBCSCCCEEEEEECCCC
T ss_pred ChhHHHHHHHHHHHHHHHhccCcccccccccccccCCCCeEEEEEeCCC
Confidence 7776644444444444455443211111 1234679999999888
No 311
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=36.75 E-value=51 Score=31.71 Aligned_cols=79 Identities=6% Similarity=0.067 Sum_probs=51.3
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEec-ChhH
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQA-SLDM 244 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~-~~~~ 244 (771)
++|+++..+ ++|. ....+.+.+++++.| .++..... .. + ...-...++.+.+.+.|.|++ .. ....
T Consensus 2 ~~Igvi~~~~~~~f~--~~~~~gi~~~~~~~g-~~~~~~~~--~~----~-~~~~~~~i~~l~~~~vdgiIi-~~~~~~~ 70 (271)
T 2dri_A 2 DTIALVVSTLNNPFF--VSLKDGAQKEADKLG-YNLVVLDS--QN----N-PAKELANVQDLTVRGTKILLI-NPTDSDA 70 (271)
T ss_dssp CEEEEEESCSSSHHH--HHHHHHHHHHHHHHT-CEEEEEEC--TT----C-HHHHHHHHHHHTTTTEEEEEE-CCSSTTT
T ss_pred cEEEEEecCCCCHHH--HHHHHHHHHHHHHcC-cEEEEeCC--CC----C-HHHHHHHHHHHHHcCCCEEEE-eCCChHH
Confidence 468888765 3455 667888899999999 77654321 11 1 123445677777788999988 54 3333
Q ss_pred HHHHHHHHHHcCC
Q 004136 245 TIHLFTEANRMGL 257 (771)
Q Consensus 245 ~~~il~~a~~~g~ 257 (771)
....++.+.+.|.
T Consensus 71 ~~~~~~~~~~~~i 83 (271)
T 2dri_A 71 VGNAVKMANQANI 83 (271)
T ss_dssp THHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 3456777777775
No 312
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=36.42 E-value=49 Score=30.67 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeC---CCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCC
Q 004136 155 MKCIADLARKYNWRRVAAIYEDN---VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ 231 (771)
Q Consensus 155 ~~a~~~~l~~~~w~~v~ii~~~~---~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~ 231 (771)
...+.+++.....++|++|-... ++ ....+.+++.+++.| .++.... +.... .++..+ .+. +
T Consensus 15 ~~~~~~f~~~~~~~~i~~Ip~As~~~~~---~~~~~s~~~a~~~lG-~~v~~~~-i~~~~-----~~~~~~---~l~--~ 79 (206)
T 3l4e_A 15 VPLFTEFESNLQGKTVTFIPTASTVEEV---TFYVEAGKKALESLG-LLVEELD-IATES-----LGEITT---KLR--K 79 (206)
T ss_dssp HHHHHHHSCCCTTCEEEEECGGGGGCSC---CHHHHHHHHHHHHTT-CEEEECC-TTTSC-----HHHHHH---HHH--H
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCH---HHHHHHHHHHHHHcC-CeEEEEE-ecCCC-----hHHHHH---HHH--h
Confidence 34445565555668999986432 22 456788999999999 7655432 11111 123433 333 4
Q ss_pred ceEEEEEecChhHHHHHHHHHHHcCC
Q 004136 232 SRVFIVLQASLDMTIHLFTEANRMGL 257 (771)
Q Consensus 232 ~~vIv~~~~~~~~~~~il~~a~~~g~ 257 (771)
+|.|++ .+ .+...+++.+++.|+
T Consensus 80 ad~I~l-~G--G~~~~l~~~L~~~gl 102 (206)
T 3l4e_A 80 NDFIYV-TG--GNTFFLLQELKRTGA 102 (206)
T ss_dssp SSEEEE-CC--SCHHHHHHHHHHHTH
T ss_pred CCEEEE-CC--CCHHHHHHHHHHCCh
Confidence 788888 55 333355666665554
No 313
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=35.65 E-value=1.2e+02 Score=29.73 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=66.7
Q ss_pred EEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHh---HH
Q 004136 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE---TA 111 (771)
Q Consensus 35 I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~---~~ 111 (771)
=+||++...+...+.....+++-|+++. |.++......+ .....+.+.++. +++.||+.+.+... ..
T Consensus 141 ~~I~~i~~~~~~~~~~r~~g~~~al~~~-----gi~~~~~~~~~---~~~~~~~~~~l~--~~~dai~~~~D~~a~g~~~ 210 (302)
T 2qh8_A 141 KSIGVVYNPGEANAVSLMELLKLSAAKH-----GIKLVEATALK---SADVQSATQAIA--EKSDVIYALIDNTVASAIE 210 (302)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHT-----TCEEEEEECSS---GGGHHHHHHHHG--GGCSEEEECSCHHHHTTHH
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHHHc-----CCEEEEEecCC---hHHHHHHHHHHh--ccCCEEEECCcHhHHHHHH
Confidence 4688887554323445567777777664 44554333322 344556667776 36778887655432 22
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
++...+...++|++++... .+.. |-+..+..+...+++..++++.
T Consensus 211 ~l~~~~~~~~i~vig~d~~----~~~~---~~Lttv~~~~~~~G~~Aa~~l~ 255 (302)
T 2qh8_A 211 GMIVAANQAKTPVFGAATS----YVER---GAIASLGFDYYQIGVQTADYVA 255 (302)
T ss_dssp HHHHHHHHTTCCEEESSHH----HHHT---TCSEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEECCHH----HHhC---CcEEEEeCCHHHHHHHHHHHHH
Confidence 2334444579999986532 2222 5566777888888888887773
No 314
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=35.39 E-value=92 Score=28.33 Aligned_cols=71 Identities=8% Similarity=0.076 Sum_probs=49.4
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
..+-.+++..+.++. +.+ +++.. +....++..|.+|++|+++..... ....+.+ .|+....+.+++++..+
T Consensus 17 ~~~l~~~l~~f~~~~P~v~--l~l~~--~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~~-~~l~~~~~~~v~~~~hp 88 (219)
T 1i6a_A 17 PYLLPHIIPMLHQTFPKLE--MYLHE--AQTHQLLAQLDSGKLDAVILALVK---ESEAFIE-VPLFDEPMLLAIYEDHP 88 (219)
T ss_dssp HHHHHHHHHHHHHHCTTEE--EEEEE--CCHHHHHHHHHHTSCSEEEEECCG---GGTTSEE-EEEEEEEEEEEEETTSG
T ss_pred hhhhhHHHHHHHHHCCCeE--EEEEE--CChHHHHHHHHcCCeeEEEecCCC---CCCCcce-eeeecccEEEEEcCCCc
Confidence 456778888888887 444 55544 357789999999999999863321 1122322 57888889999987664
No 315
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=35.34 E-value=79 Score=30.66 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEeeE
Q 004136 490 FSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDL 536 (771)
Q Consensus 490 ~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~ 536 (771)
+.-.++..+-+.+|+++++.... . .-+...|.+|++|+.....
T Consensus 179 ~~~~v~~~~Le~~Gy~Ve~~~~~---~-~~~~~al~~G~iD~~~e~w 221 (268)
T 2b4l_A 179 ASTNVIGKVLEDLGYEVTLTQVE---A-GPMWTAIATGSADASLSAW 221 (268)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECC---T-THHHHHHHHTSSSEEEEEE
T ss_pred HHHHHHHHHHHHcCCceEEEECC---h-HHHHHHHHCCCCeEEehhh
Confidence 34455666667789997766532 2 5578899999999986654
No 316
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=35.31 E-value=44 Score=32.48 Aligned_cols=83 Identities=11% Similarity=0.052 Sum_probs=54.0
Q ss_pred HcCCeEEEEEEEe-------CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEE
Q 004136 164 KYNWRRVAAIYED-------NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236 (771)
Q Consensus 164 ~~~w~~v~ii~~~-------~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv 236 (771)
.-+-++|+++..+ ++|. ....+.+.+++++.| ..+... .... ........++.+.+.+.|.|+
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~---~~~~----~~~~~~~~~~~~~~~~vdgiI 74 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFF--PEVIRGISSFAHVEG-YALYMS---TGET----EEEIFNGVVKMVQGRQIGGII 74 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHH--HHHHHHHHHHHHHTT-CEEEEC---CCCS----HHHHHHHHHHHHHTTCCCEEE
T ss_pred cCCCCEEEEEecCCccccccCHHH--HHHHHHHHHHHHHcC-CEEEEE---eCCC----CHHHHHHHHHHHHcCCCCEEE
Confidence 3455688988876 3455 677888999999999 776542 1111 113345667778788999999
Q ss_pred EEecChhHHHHHHHHHHHcCCC
Q 004136 237 VLQASLDMTIHLFTEANRMGLV 258 (771)
Q Consensus 237 ~~~~~~~~~~~il~~a~~~g~~ 258 (771)
+ ...... ...++.+.+.|++
T Consensus 75 i-~~~~~~-~~~~~~l~~~~iP 94 (292)
T 3k4h_A 75 L-LYSREN-DRIIQYLHEQNFP 94 (292)
T ss_dssp E-SCCBTT-CHHHHHHHHTTCC
T ss_pred E-eCCCCC-hHHHHHHHHCCCC
Confidence 8 543322 2567777777763
No 317
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=35.20 E-value=48 Score=33.15 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=52.0
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCC--ceEEEEEec-Ch
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ--SRVFIVLQA-SL 242 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~--~~vIv~~~~-~~ 242 (771)
.+|+++..+ ++|. ....+.+++.+++.| .++..... .. + .......++.+.+.+ .|.|++ .. ..
T Consensus 6 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~l~~~~~--~~----~-~~~~~~~i~~l~~~~~~vdgiIi-~~~~~ 74 (332)
T 2rjo_A 6 TTLACSFRSLTNPYY--TAFNKGAQSFAKSVG-LPYVPLTT--EG----S-SEKGIADIRALLQKTGGNLVLNV-DPNDS 74 (332)
T ss_dssp CEEEEEESCTTSHHH--HHHHHHHHHHHHHHT-CCEEEEEC--TT----C-HHHHHHHHHHHHHHTTTCEEEEE-CCSSH
T ss_pred cEEEEEecCCCcHHH--HHHHHHHHHHHHHcC-CEEEEecC--CC----C-HHHHHHHHHHHHHCCCCCCEEEE-eCCCH
Confidence 578888864 3455 667788899999999 77654321 11 1 133455677777778 999988 54 44
Q ss_pred hHHHHHHHHHHHcCC
Q 004136 243 DMTIHLFTEANRMGL 257 (771)
Q Consensus 243 ~~~~~il~~a~~~g~ 257 (771)
......++.+.+.++
T Consensus 75 ~~~~~~~~~~~~~~i 89 (332)
T 2rjo_A 75 ADARVIVEACSKAGA 89 (332)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCC
Confidence 444467777877775
No 318
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=35.20 E-value=2.1e+02 Score=26.21 Aligned_cols=88 Identities=11% Similarity=-0.059 Sum_probs=58.4
Q ss_pred eEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecC----hh
Q 004136 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS----LD 243 (771)
Q Consensus 168 ~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~----~~ 243 (771)
.++.+....++.- .-....+...++..| +++.+--. .. .....+..+++.++++|.+ .+. ..
T Consensus 89 ~~vll~~~~gd~H--~iG~~~va~~l~~~G-~~v~~LG~---~v-------p~~~l~~~~~~~~~d~v~l-S~~~~~~~~ 154 (210)
T 1y80_A 89 GKIVLGTVKGDLH--DIGKNLVAMMLESGG-FTVYNLGV---DI-------EPGKFVEAVKKYQPDIVGM-SALLTTTMM 154 (210)
T ss_dssp CEEEEEEBTTCCC--CHHHHHHHHHHHHTT-CEEEECCS---SB-------CHHHHHHHHHHHCCSEEEE-ECCSGGGTH
T ss_pred CEEEEEeCCCccc--HHHHHHHHHHHHHCC-CEEEECCC---CC-------CHHHHHHHHHHcCCCEEEE-eccccccHH
Confidence 4666666665543 666888999999999 88765321 11 2455666777779999999 664 24
Q ss_pred HHHHHHHHHHHcCCCCCCeEEEeeCc
Q 004136 244 MTIHLFTEANRMGLVGKDSVWIVTNT 269 (771)
Q Consensus 244 ~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (771)
....+++++++.+....--+++++..
T Consensus 155 ~~~~~i~~l~~~~~~~~~~v~vGG~~ 180 (210)
T 1y80_A 155 NMKSTIDALIAAGLRDRVKVIVGGAP 180 (210)
T ss_dssp HHHHHHHHHHHTTCGGGCEEEEESTT
T ss_pred HHHHHHHHHHhcCCCCCCeEEEECCC
Confidence 67888888888876432235555444
No 319
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=35.13 E-value=70 Score=31.76 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=51.4
Q ss_pred CCeEEEEEEEe-CCCCCCcchHHHHHHHHhcc-CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecC-h
Q 004136 166 NWRRVAAIYED-NVYGGDSGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS-L 242 (771)
Q Consensus 166 ~w~~v~ii~~~-~~~g~~~~~~~~l~~~~~~~-g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~-~ 242 (771)
+-.+|+++..+ ++|. ....+.+.+.+++. | +++..... . . + .......++.+.+.++|.|++ ... .
T Consensus 5 ~~~~Igvi~~~~~~~~--~~~~~gi~~~a~~~~g-~~l~i~~~-~-~----~-~~~~~~~i~~l~~~~vdgiIi-~~~~~ 73 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWR--HKMNDEILREAMFYNG-VSVEIRSA-G-D----D-NSKQAEDVHYFMDEGVDLLII-SANEA 73 (325)
T ss_dssp -CCEEEEEESCCSHHH--HHHHHHHHHHHTTSSS-CEEEEEEC-T-T----C-HHHHHHHHHHHHHTTCSEEEE-CCSSH
T ss_pred CCeEEEEEecCCCHHH--HHHHHHHHHHHHHcCC-cEEEEeCC-C-C----C-HHHHHHHHHHHHHcCCCEEEE-eCCCH
Confidence 34578888765 2244 45677888888888 8 77654321 1 1 1 133456677777788999998 543 3
Q ss_pred hHHHHHHHHHHHcCC
Q 004136 243 DMTIHLFTEANRMGL 257 (771)
Q Consensus 243 ~~~~~il~~a~~~g~ 257 (771)
......++.+.+.|+
T Consensus 74 ~~~~~~~~~~~~~~i 88 (325)
T 2x7x_A 74 APMTPIVEEAYQKGI 88 (325)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCC
Confidence 334566777777775
No 320
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=34.98 E-value=2e+02 Score=27.23 Aligned_cols=119 Identities=12% Similarity=0.051 Sum_probs=70.4
Q ss_pred EEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEcCCchHhHHHH
Q 004136 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVV 113 (771)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~s~~~~~v 113 (771)
+||++.... ......-..|++.|+++.+-. ....+ +.....+...+.+.+.+++.. .++.+|+.... ..+..+
T Consensus 122 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~a~g~ 196 (275)
T 3d8u_A 122 NVGFIGARGNHSTLQRQLHGWQSAMIENYLT---PDHFL-TTHEAPSSQLGAEGLAKLLLRDSSLNALVCSHE-EIAIGA 196 (275)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHTTCC---CCCEE-ECSSCCCHHHHHHHHHHHHTTCTTCCEEEESSH-HHHHHH
T ss_pred eEEEEcCCCCCchHHHHHHHHHHHHHHcCCC---CCccE-EEeCCCChhHHHHHHHHHHhCCCCCCEEEEcCc-HHHHHH
Confidence 578777553 223455677888888775321 11122 234456788888888888854 35889997543 334444
Q ss_pred HHhhccCC--cc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 114 AEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 114 ~~~~~~~~--iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
...+.+.+ +| ++++... .......|.+..+..+...+++..++.+.
T Consensus 197 ~~al~~~g~~vP~di~vvg~d~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 248 (275)
T 3d8u_A 197 LFECHRRVLKVPTDIAIICLEGS----SMGEHAYPSLTSAEFDYERMGTKAAEKLL 248 (275)
T ss_dssp HHHHHHTTCCTTTTCEEEESSCC----HHHHTSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCceEEEecCCc----hHhhhcCCCcceecCCHHHHHHHHHHHHH
Confidence 44444443 44 6665543 22222235566677777888888888764
No 321
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=34.47 E-value=82 Score=30.38 Aligned_cols=72 Identities=10% Similarity=-0.045 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeec---cceeeeecccceeeccEEEEEecCC
Q 004136 490 FSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILG---NRTEYVEFTQPYAESGFSMIVPAKQ 565 (771)
Q Consensus 490 ~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~---~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (771)
+.-.++..+.++. +.++++... +-..++.+|.+|++|+++....... .....+ -..|+...+++++++...
T Consensus 17 ~~~~~~~~F~~~~P~v~i~v~~~----gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~d~lvvvv~~~~ 91 (265)
T 4exl_A 17 LVEVAADEFGTIHVGKTVNVQGG----GSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAVAGLALIVNKEV 91 (265)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEE----CHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHCCCceEEEeeC----CcHHHHHHHHcCCCccccccCCcchhhcccccCc-eEeeEEEEEEEEEECCCC
Confidence 4556677777777 666555432 3577899999999999987543321 011112 257899999999998655
Q ss_pred C
Q 004136 566 E 566 (771)
Q Consensus 566 ~ 566 (771)
+
T Consensus 92 ~ 92 (265)
T 4exl_A 92 D 92 (265)
T ss_dssp C
T ss_pred c
Confidence 3
No 322
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=34.40 E-value=62 Score=31.47 Aligned_cols=79 Identities=14% Similarity=0.000 Sum_probs=51.1
Q ss_pred CeEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhH
Q 004136 167 WRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDM 244 (771)
Q Consensus 167 w~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~ 244 (771)
-+.|+++..+ ++|. ....+.+++++++.| ..+.... ... + .......++.+.+.+.|.|++ ......
T Consensus 16 s~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~--~~~----~-~~~~~~~~~~l~~~~vdgiIi-~~~~~~ 84 (289)
T 2fep_A 16 TTTVGVIIPDISSIFY--SELARGIEDIATMYK-YNIILSN--SDQ----N-MEKELHLLNTMLGKQVDGIVF-MGGNIT 84 (289)
T ss_dssp CCEEEEEESCTTSHHH--HHHHHHHHHHHHHTT-CEEEEEE--CTT----C-HHHHHHHHHHHHHTTCSEEEE-CCSCCC
T ss_pred CCeEEEEeCCCCCchH--HHHHHHHHHHHHHcC-CEEEEEe--CCC----C-HHHHHHHHHHHHhCCCCEEEE-ecCCCC
Confidence 3578898875 3455 667888999999999 8765432 111 1 133456677777889999988 543221
Q ss_pred HHHHHHHHHHcCC
Q 004136 245 TIHLFTEANRMGL 257 (771)
Q Consensus 245 ~~~il~~a~~~g~ 257 (771)
...++.+.+.|.
T Consensus 85 -~~~~~~l~~~~i 96 (289)
T 2fep_A 85 -DEHVAEFKRSPV 96 (289)
T ss_dssp -HHHHHHHHHSSS
T ss_pred -HHHHHHHHhcCC
Confidence 345666666665
No 323
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=34.14 E-value=1.5e+02 Score=28.39 Aligned_cols=121 Identities=11% Similarity=0.036 Sum_probs=71.5
Q ss_pred EEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEcCCchHhHHHH
Q 004136 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVV 113 (771)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~s~~~~~v 113 (771)
+||++.... ......-..|++.|+++.+-..... .+ .....+...+.+.+.+++.. .++.+|+.... ..+..+
T Consensus 129 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~a~g~ 203 (289)
T 3g85_A 129 SAAAILTESLNDAMDNRNKGFIETCHKNGIKISEN---HI-IAAENSIHGGVDAAKKLMKLKNTPKALFCNSD-SIALGV 203 (289)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGG---GE-EECCSSHHHHHHHHHHHTTSSSCCSEEEESSH-HHHHHH
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChh---he-eccCCCHHHHHHHHHHHHcCCCCCcEEEEcCC-HHHHHH
Confidence 577776544 2233456678888887754321111 11 23456778888888998853 36889997543 344444
Q ss_pred HHhhccCC--cc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 114 AEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 114 ~~~~~~~~--iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
...+...+ +| ++++... +..+.....|.+-.+..+...+++..++.+.
T Consensus 204 ~~al~~~g~~vP~di~vig~d~~--~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 257 (289)
T 3g85_A 204 ISVLNKRQISIPDDIEIVAIGMN--DREYTEFSTPPVTIVDIPIEEMAGTCISLVE 257 (289)
T ss_dssp HHHHHHTTCCTTTTCEEEEEECS--CHHHHHSSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCceEEEEeCCC--CcchhhccCCCCeEEcCCHHHHHHHHHHHHH
Confidence 44444443 34 7777622 2233333345566777888888888888774
No 324
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=33.78 E-value=27 Score=34.54 Aligned_cols=89 Identities=15% Similarity=0.041 Sum_probs=54.2
Q ss_pred HHHHHHHcCCeEEEEEEEe-------CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC
Q 004136 158 IADLARKYNWRRVAAIYED-------NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK 230 (771)
Q Consensus 158 ~~~~l~~~~w~~v~ii~~~-------~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~ 230 (771)
.+.-++..+-++|+++..+ ++|. ....+.+.+.+++.| ..+.... ... +.......++.+.+.
T Consensus 13 ~Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~---~~~----~~~~~~~~~~~l~~~ 82 (305)
T 3huu_A 13 AARTLITNKTLTIGLIQKSSAPEIRQNPFN--SDVLNGINQACNVRG-YSTRMTV---SEN----SGDLYHEVKTMIQSK 82 (305)
T ss_dssp --------CCCEEEEECSCCSHHHHTSHHH--HHHHHHHHHHHHHHT-CEEEECC---CSS----HHHHHHHHHHHHHTT
T ss_pred HHHHhhhCCCCEEEEEeCCCccccccCcHH--HHHHHHHHHHHHHCC-CEEEEEe---CCC----ChHHHHHHHHHHHhC
Confidence 3444555566789999877 3355 667888999999999 7765421 111 112345677778888
Q ss_pred CceEEEEEecChhHHHHHHHHHHHcCCC
Q 004136 231 QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (771)
Q Consensus 231 ~~~vIv~~~~~~~~~~~il~~a~~~g~~ 258 (771)
+.|.|++ ...... ...++.+.+.|++
T Consensus 83 ~vdgiIi-~~~~~~-~~~~~~l~~~~iP 108 (305)
T 3huu_A 83 SVDGFIL-LYSLKD-DPIEHLLNEFKVP 108 (305)
T ss_dssp CCSEEEE-SSCBTT-CHHHHHHHHTTCC
T ss_pred CCCEEEE-eCCcCC-cHHHHHHHHcCCC
Confidence 9999998 543322 2567777777763
No 325
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=33.66 E-value=31 Score=33.78 Aligned_cols=89 Identities=12% Similarity=0.061 Sum_probs=51.8
Q ss_pred HHHHHHHcCCeEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEE
Q 004136 158 IADLARKYNWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (771)
Q Consensus 158 ~~~~l~~~~w~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vI 235 (771)
.+.-++.-+-.+|+++..+ ++|. ....+.+.+.+++.| .++..... .. + .......++.+.+.+.|.|
T Consensus 11 ~Ar~L~~~~~~~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~~--~~----~-~~~~~~~~~~l~~~~vdgi 80 (293)
T 2iks_A 11 VAAGLRAGRTRSIGLVIPDLENTSY--TRIANYLERQARQRG-YQLLIACS--ED----Q-PDNEMRCIEHLLQRQVDAI 80 (293)
T ss_dssp -------CCCCEEEEEESCSCSHHH--HHHHHHHHHHHHHTT-CEEEEEEC--TT----C-HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHhhcCCCcEEEEEeCCCcCcHH--HHHHHHHHHHHHHCC-CEEEEEcC--CC----C-HHHHHHHHHHHHHcCCCEE
Confidence 3344444555789999865 3455 667888899999999 87764321 11 1 1334566777777889999
Q ss_pred EEEecChhHHHHHHHHHHHcCC
Q 004136 236 IVLQASLDMTIHLFTEANRMGL 257 (771)
Q Consensus 236 v~~~~~~~~~~~il~~a~~~g~ 257 (771)
++ .........+++.+.+.|.
T Consensus 81 i~-~~~~~~~~~~~~~~~~~~i 101 (293)
T 2iks_A 81 IV-STSLPPEHPFYQRWANDPF 101 (293)
T ss_dssp EE-CCSSCTTCHHHHTTTTSSS
T ss_pred EE-eCCCCCcHHHHHHHHhCCC
Confidence 98 5433222234555555554
No 326
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=33.57 E-value=48 Score=33.75 Aligned_cols=83 Identities=11% Similarity=0.087 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEE
Q 004136 157 CIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236 (771)
Q Consensus 157 a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv 236 (771)
.+.++++.++.+++.+|++... ....+.+.+.+++.+ +.+ +.. ..++. +.+...+.+..+++.++|+||
T Consensus 24 ~l~~~l~~~g~~r~liVtd~~~----~~~~~~v~~~L~~~~-~~v-~~~-v~~~p----~~~~v~~~~~~~~~~~~D~II 92 (353)
T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQ----KGDAEALASRLGRLA-AGV-FSE-AAMHT----PVEVTKTAVEAYRAAGADCVV 92 (353)
T ss_dssp GHHHHHHHTTCCCEEEECCGGG----HHHHHHHHHHHGGGE-EEE-ECC-CCTTC----BHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHhCCCEEEEEecCch----hhHHHHHHHHHhhCC-cEE-ecC-cCCCC----cHHHHHHHHHHHhccCCCEEE
Confidence 4677888899899999987643 345778888888776 543 111 11111 124677788888888999988
Q ss_pred EEecCh--hHHHHHHHH
Q 004136 237 VLQASL--DMTIHLFTE 251 (771)
Q Consensus 237 ~~~~~~--~~~~~il~~ 251 (771)
- .+.+ -++.+++..
T Consensus 93 a-vGGGs~iD~aK~iA~ 108 (353)
T 3hl0_A 93 S-LGGGSTTGLGKAIAL 108 (353)
T ss_dssp E-EESHHHHHHHHHHHH
T ss_pred E-eCCcHHHHHHHHHHh
Confidence 7 5444 345555544
No 327
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=33.51 E-value=74 Score=29.53 Aligned_cols=69 Identities=9% Similarity=-0.102 Sum_probs=49.6
Q ss_pred ccchHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCC
Q 004136 488 DGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
..+-.+++..+.++. +.+ +.+.. +....++..|.+|++|+++...... .+ -+.++....+.+++++...
T Consensus 39 ~~~l~~~l~~f~~~~P~i~--l~i~~--~~~~~~~~~L~~g~~Dl~i~~~~~~-----~~-~~~~l~~~~~~~v~~~~~~ 108 (238)
T 3onm_A 39 DTLLPFLLNRVATLYPRLA--IDVRV--KRSPFIADMLSSGEVDLAITTAKVD-----SH-PHVILRTSPTLWYCSVDYQ 108 (238)
T ss_dssp TTHHHHHHHHHHHHCTTCC--EEEEE--CCHHHHHHHHHHTSCSEEEECSCC------CC-CEEEEEEECEEEEEETTCC
T ss_pred HHHHHHHHHHHHHHCCCcE--EEEEE--CCHHHHHHHHHCCCccEEEEecCCC-----Cc-ceEEeecCCEEEEEcCCCC
Confidence 356778899998887 555 44443 3577899999999999998743321 12 3468888999999987654
No 328
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=33.49 E-value=81 Score=27.95 Aligned_cols=64 Identities=25% Similarity=0.331 Sum_probs=40.9
Q ss_pred EEEEEEEeCCC--C-CCcchHHHHHHH----HhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEec
Q 004136 169 RVAAIYEDNVY--G-GDSGKLALLAEA----LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQA 240 (771)
Q Consensus 169 ~v~ii~~~~~~--g-~~~~~~~~l~~~----~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~ 240 (771)
++++|...|+- | ..+.-...+.+. +++.| .++.....++.+. ..+.+.+++..+.++|+|+. .+
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G-~~v~~~~iv~Dd~------~~I~~~l~~a~~~~~DlVit-tG 77 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYS-YELISEVVVPEGY------DTVVEAIATALKQGARFIIT-AG 77 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CE-EEEEEEEEECSSH------HHHHHHHHHHHHTTCSEEEE-ES
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCC-CEEeEEEEeCCCH------HHHHHHHHHHHhCCCCEEEE-CC
Confidence 67777765431 1 003345678888 88999 8887777666544 67888888877656999998 54
No 329
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=33.32 E-value=71 Score=32.71 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=62.2
Q ss_pred ceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHH
Q 004136 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (771)
Q Consensus 142 p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~ 221 (771)
|+-+...+... ..+.++++.++ +++.+|++...+ ....+.+.+.+++.| +++.. ..+.... +.+.+.
T Consensus 10 p~~i~~G~g~~---~~l~~~l~~~g-~~~livtd~~~~---~~~~~~v~~~L~~~g-~~~~~-~~~~ge~----~~~~v~ 76 (370)
T 1jq5_A 10 PAKYVQGKNVI---TKIANYLEGIG-NKTVVIADEIVW---KIAGHTIVNELKKGN-IAAEE-VVFSGEA----SRNEVE 76 (370)
T ss_dssp CSEEEEETTGG---GGHHHHHTTTC-SEEEEEECHHHH---HHTHHHHHHHHHTTT-CEEEE-EECCSSC----BHHHHH
T ss_pred CCeEEECcCHH---HHHHHHHHHcC-CeEEEEEChHHH---HHHHHHHHHHHHHcC-CeEEE-EeeCCCC----CHHHHH
Confidence 44444555432 23566777777 899999876554 345788889999889 77743 2333322 124677
Q ss_pred HHHHHhhhCCceEEEEEec--ChhHHHHHHHH
Q 004136 222 GELKKVQDKQSRVFIVLQA--SLDMTIHLFTE 251 (771)
Q Consensus 222 ~~l~~l~~~~~~vIv~~~~--~~~~~~~il~~ 251 (771)
..+..+++.++|+||- .+ +..++..++..
T Consensus 77 ~~~~~~~~~~~d~IIa-vGGGsv~D~aK~iA~ 107 (370)
T 1jq5_A 77 RIANIARKAEAAIVIG-VGGGKTLDTAKAVAD 107 (370)
T ss_dssp HHHHHHHHTTCSEEEE-EESHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEE-eCChHHHHHHHHHHH
Confidence 7888888889999996 44 34566666653
No 330
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=32.95 E-value=19 Score=36.30 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=20.0
Q ss_pred CcchhHHHHHHHHH--HHhhCcccccccCCCCCCCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEe
Q 004136 1 MNRFFFLVLIIASE--LVFVSPGVESASTNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR 76 (771)
Q Consensus 1 m~~~~~~l~~~~~~--~~l~~~~~~~~~~~~~~~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~ 76 (771)
|||+.+++++++++ +++++|+...... .+++|+|..- . .......+-.+++.+++. |++|+++..
T Consensus 4 Mkk~~~~~~~~~~~~~~~lagC~~~~~~~---~~~~l~v~~~---~----~~~~~~~~~~~~~f~~~~-gi~V~~~~~ 70 (351)
T 4edp_A 4 MKKKILATLLTGLVLGTSLVGCGKTEGAE---AGKKLVVSTW---G----LNEDVLKETVFEPFAKEH-GVEIVLDIG 70 (351)
T ss_dssp -----------------------------------CEEEEEC---C----TTHHHHHHHTHHHHHHHH-TCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhheeCCCCccC---CCCeEEEEEc---c----CcHHHHHHHHHHHHHHHH-CCEEEEEeC
Confidence 66654433332222 2445555433222 2366777432 1 113334555666666665 788888753
No 331
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=32.92 E-value=63 Score=31.37 Aligned_cols=80 Identities=11% Similarity=-0.023 Sum_probs=50.6
Q ss_pred CCeEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHH---HHHHhhhCCceEEEEEec
Q 004136 166 NWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRG---ELKKVQDKQSRVFIVLQA 240 (771)
Q Consensus 166 ~w~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~---~l~~l~~~~~~vIv~~~~ 240 (771)
+-.+|+++..+ ++|. ....+.+++++++.| ..+..... ..+. ..... .++.+.+.+.|.|++ ..
T Consensus 7 ~~~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~~~------~~~~~~~~~~~~l~~~~vdgiIi-~~ 75 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYY--GTILKQTDLELRAVH-RHVVVATG-CGES------TPREQALEAVRFLIGRDCDGVVV-IS 75 (290)
T ss_dssp -CCEEEEECSCSCSHHH--HHHHHHHHHHHHHTT-CEEEEECC-CSSS------CHHHHHHHHHHHHHHTTCSEEEE-CC
T ss_pred CCCeEEEEeCCCCCchH--HHHHHHHHHHHHHCC-CEEEEEeC-CCch------hhhhhHHHHHHHHHhcCccEEEE-ec
Confidence 44678888864 3455 667888999999999 77654221 1111 22344 677777788999998 54
Q ss_pred ChhHHHHHHHHHHHcCC
Q 004136 241 SLDMTIHLFTEANRMGL 257 (771)
Q Consensus 241 ~~~~~~~il~~a~~~g~ 257 (771)
.... ...++.+.+.|+
T Consensus 76 ~~~~-~~~~~~l~~~~i 91 (290)
T 2rgy_A 76 HDLH-DEDLDELHRMHP 91 (290)
T ss_dssp SSSC-HHHHHHHHHHCS
T ss_pred CCCC-HHHHHHHhhcCC
Confidence 3322 345666666665
No 332
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=32.84 E-value=2.3e+02 Score=24.82 Aligned_cols=95 Identities=14% Similarity=-0.023 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEee--ecCCCCCCCCchHHHHHHHHHhh-hCCc
Q 004136 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRL--VLPPISSISDPKEAVRGELKKVQ-DKQS 232 (771)
Q Consensus 156 ~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~--~~~~~~~~~d~~~~~~~~l~~l~-~~~~ 232 (771)
..+.+.+...+--..+..| .+..+ ....+.+.+.+...| +++.... .+..+....+ .|..=.+.-+. ....
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y-~~~~~--~~~~~~~~~~L~~~g-~~v~~~p~~~~~~~~~k~~--~Dv~laiD~~~~a~~~ 109 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAY-AIASN--DPKQRQFHHILRGVG-FEVMLKPYIQRRDGSAKGD--WDVGITLDAIEIAPDV 109 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEE-ECCCC--CHHHHHHHHHHHHHT-CEEEECCCCCCSSCCCSCC--CHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhcCCEEEEEEEE-EccCC--chhHHHHHHHHHHCC-cEEEEEeeeeccCCccCCC--ccHHHHHHHHHhhccC
Confidence 4556666555544445556 33323 345678889999999 8876432 1222111222 23222222221 2467
Q ss_pred eEEEEEecChhHHHHHHHHHHHc-CC
Q 004136 233 RVFIVLQASLDMTIHLFTEANRM-GL 257 (771)
Q Consensus 233 ~vIv~~~~~~~~~~~il~~a~~~-g~ 257 (771)
|.+++ .+...+...+++.+++. |.
T Consensus 110 d~~vL-vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 110 DRVIL-VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp SEEEE-ECCCGGGHHHHHHHHHHHCC
T ss_pred CEEEE-EECChhHHHHHHHHHHHcCc
Confidence 88888 77777899999999995 85
No 333
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=32.68 E-value=83 Score=28.18 Aligned_cols=64 Identities=9% Similarity=0.010 Sum_probs=42.7
Q ss_pred EEEEEEEeCC-------CCC-CcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhh-hCCceEEEEEe
Q 004136 169 RVAAIYEDNV-------YGG-DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-DKQSRVFIVLQ 239 (771)
Q Consensus 169 ~v~ii~~~~~-------~g~-~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~-~~~~~vIv~~~ 239 (771)
+++||...|. .|. .+.....+.+.+++.| +++.....++.+. ..+...+.... ..++|+|+. .
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G-~~v~~~~iV~Dd~------~~i~~al~~~~a~~~~DlVit-t 88 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENG-HKIIGYSLVPDDK------IKILKAFTDALSIDEVDVIIS-T 88 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTT-CEEEEEEEECSCH------HHHHHHHHHHHTCTTCCEEEE-E
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCC-CEEEEEEEeCCCH------HHHHHHHHHHHhcCCCCEEEe-c
Confidence 7888876541 010 0223567889999999 9998877777554 55676666554 346899998 5
Q ss_pred c
Q 004136 240 A 240 (771)
Q Consensus 240 ~ 240 (771)
+
T Consensus 89 G 89 (178)
T 3iwt_A 89 G 89 (178)
T ss_dssp S
T ss_pred C
Confidence 4
No 334
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=32.28 E-value=2.3e+02 Score=27.02 Aligned_cols=86 Identities=10% Similarity=-0.031 Sum_probs=58.1
Q ss_pred eEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeee-cCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecC----h
Q 004136 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLV-LPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS----L 242 (771)
Q Consensus 168 ~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~-~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~----~ 242 (771)
.+|.+....++.- .-....+...++..| +++.+--. .+ ....+..+++.++++|.+ .+. .
T Consensus 124 ~~vlla~~~gd~H--diG~~iva~~L~~~G-~~Vi~LG~~vp-----------~e~l~~~~~~~~~d~V~l-S~l~~~~~ 188 (258)
T 2i2x_B 124 GTVVCHVAEGDVH--DIGKNIVTALLRANG-YNVVDLGRDVP-----------AEEVLAAVQKEKPIMLTG-TALMTTTM 188 (258)
T ss_dssp CEEEEEECTTCCC--CHHHHHHHHHHHHTT-CEEEEEEEECC-----------SHHHHHHHHHHCCSEEEE-ECCCTTTT
T ss_pred CeEEEEeCCCCcc--HHHHHHHHHHHHHCC-CEEEECCCCCC-----------HHHHHHHHHHcCCCEEEE-EeeccCCH
Confidence 4666666655543 666888889999999 88865432 22 244455666678999998 653 3
Q ss_pred hHHHHHHHHHHHcCCCCCCeEEEeeCcc
Q 004136 243 DMTIHLFTEANRMGLVGKDSVWIVTNTV 270 (771)
Q Consensus 243 ~~~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (771)
.....+++++++.+...+ +++++...
T Consensus 189 ~~~~~~i~~l~~~~~~~~--v~vGG~~~ 214 (258)
T 2i2x_B 189 YAFKEVNDMLLENGIKIP--FACGGGAV 214 (258)
T ss_dssp THHHHHHHHHHTTTCCCC--EEEESTTC
T ss_pred HHHHHHHHHHHhcCCCCc--EEEECccC
Confidence 567888899998887644 56665443
No 335
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=31.71 E-value=1.1e+02 Score=29.97 Aligned_cols=64 Identities=13% Similarity=0.244 Sum_probs=41.8
Q ss_pred CCChhHhhh--CCceEEEecC------hHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHH
Q 004136 673 VTDIQSLKS--GNLKVGCVDD------SFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEK 739 (771)
Q Consensus 673 i~~~~dL~~--~~~~~g~~~~------s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~ 739 (771)
|+|++||++ ..+.+|+..+ ..+..+ .+.+++....+.... .....+++++|+.+++..-++...
T Consensus 130 l~sisDL~~~~~~~~~g~~~ef~~r~gdG~~~l-~~~Ygl~~~~~~~~d--~g~~~~A~~~~~~~v~~~wsp~~~ 201 (282)
T 3o66_A 130 LETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGF-KKEYGFDFGTVRPMQ--IGLVYDALNTEKLDVALGYSTDGR 201 (282)
T ss_dssp CSBSGGGTTTGGGCEEEEEGGGCC--CCSHHHH-HHHHCCCCSEEEEEC--GGGHHHHHHTTSCSEEEEETTCHH
T ss_pred CCCHHHHHhcccceEEecCcccccCchhHHHHH-HHHcCCCCccccccC--HHHHHHHHHcCCCeEEEEeCCCch
Confidence 899999984 3467888552 333334 333565433343332 336788999999999998887754
No 336
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=31.67 E-value=41 Score=34.35 Aligned_cols=84 Identities=11% Similarity=0.051 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEE
Q 004136 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (771)
Q Consensus 156 ~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vI 235 (771)
..+.++++.++.+++.+|++.... ...+.+.+.+++.+ +.+ +.. ..++. +.+...+.++.+++.++|+|
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~----~~~~~v~~~L~~~~-~~~-f~~-v~~~p----~~~~v~~~~~~~~~~~~D~I 93 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ----AEAERIADLLGPLS-AGV-YAG-AVMHV----PIESARDATARAREAGADCA 93 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH----HHHHHHHHHHGGGE-EEE-ECC-CCTTC----BHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH----HHHHHHHHHhccCC-EEE-ecC-CcCCC----CHHHHHHHHHHhhccCCCEE
Confidence 346677888999999999876543 34677888888766 433 111 11111 12457777888888899998
Q ss_pred EEEecCh--hHHHHHHHH
Q 004136 236 IVLQASL--DMTIHLFTE 251 (771)
Q Consensus 236 v~~~~~~--~~~~~il~~ 251 (771)
|- .+.+ -++..++..
T Consensus 94 Ia-vGGGsviD~aK~iA~ 110 (358)
T 3jzd_A 94 VA-VGGGSTTGLGKAIAL 110 (358)
T ss_dssp EE-EESHHHHHHHHHHHH
T ss_pred EE-eCCcHHHHHHHHHHh
Confidence 87 5444 345555544
No 337
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=31.59 E-value=1.5e+02 Score=28.53 Aligned_cols=116 Identities=12% Similarity=0.028 Sum_probs=65.9
Q ss_pred EEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHH--HHhc-CCeEEEEcCCchHhHH
Q 004136 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQE--LINK-EKVKVIAGMETWEETA 111 (771)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~--li~~-~~v~aviGp~~s~~~~ 111 (771)
+||++.... ......-..|++.|+++.+- ++.+. ....+...+.+.+.+ ++.. .++.+|+.... ..+.
T Consensus 126 ~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~-----~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~A~ 197 (285)
T 3c3k_A 126 RIALINHDLAYQYAQHRESGYLNRLKFHGL-----DYSRI--SYAENLDYMAGKLATFSLLKSAVKPDAIFAISD-VLAA 197 (285)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHHTC-----CCCEE--EECSSSSHHHHHHHHHHHHSSSSCCSEEEESSH-HHHH
T ss_pred eEEEEeCCCccccHHHHHHHHHHHHHHcCC-----CceEe--ecCCChHHHHHHHHHHHHHcCCCCCeEEEECCH-HHHH
Confidence 577776543 22344566788888887632 22222 223345566677777 7743 36889987543 3344
Q ss_pred HHHHhhccC--Ccc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 112 VVAEIASRV--QVP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 112 ~v~~~~~~~--~iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
.+...+.+. .+| +++.... .+.....|.+..+..+...++...++.+.
T Consensus 198 g~~~al~~~g~~vP~di~vvg~d~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 251 (285)
T 3c3k_A 198 GAIQALTESGLSIPQDVAVVGFDGV----DISQITVPALTTVQQPSEQIGMKAVSLLL 251 (285)
T ss_dssp HHHHHHHHTTCCTTTTCEEECSBCC----GGGGTSSSCCBEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEeCCh----HHHhhcCCCceEEeCCHHHHHHHHHHHHH
Confidence 444444443 344 6666543 22332235555666777788887777763
No 338
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=31.57 E-value=70 Score=32.22 Aligned_cols=69 Identities=9% Similarity=0.036 Sum_probs=41.8
Q ss_pred HHHcCCeEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEe
Q 004136 162 ARKYNWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQ 239 (771)
Q Consensus 162 l~~~~w~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~ 239 (771)
++.-.-..|+++..+ ++|. ....+.+.+.+++.| ..+..... .... .......++.+.+.+.|.|++ .
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~~~-----~~~~~~~l~~l~~~~vdGiIi-~ 125 (349)
T 1jye_A 56 LAGKQSLLIGVATSSLALHAP--SQIVAAILSRADQLG-ASVVVSMV-ERSG-----VEACKTAVHNLLAQRVSGLII-N 125 (349)
T ss_dssp ------CEEEEEESCTTSHHH--HHHHHHHHHHHHHTT-CEEEEEEC-CSSS-----HHHHHHHHHHHHTTTCSCEEE-E
T ss_pred hhcCCCCEEEEEeCCCCcccH--HHHHHHHHHHHHHcC-CEEEEEeC-CCCc-----HHHHHHHHHHHHHCCCCEEEE-e
Confidence 333345688998865 3354 567788899999999 77764321 1111 123455677777788999888 5
Q ss_pred c
Q 004136 240 A 240 (771)
Q Consensus 240 ~ 240 (771)
.
T Consensus 126 ~ 126 (349)
T 1jye_A 126 Y 126 (349)
T ss_dssp S
T ss_pred c
Confidence 3
No 339
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=31.48 E-value=2.7e+02 Score=26.84 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=65.5
Q ss_pred EEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhH---H
Q 004136 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET---A 111 (771)
Q Consensus 35 I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~---~ 111 (771)
=+||++...+...+.....+++-|+++. |.++......+ .....+.+.++. +++.||+.+.+.... .
T Consensus 134 ~~I~~i~~~~~~~~~~r~~g~~~al~~~-----gi~~~~~~~~~---~~~~~~~~~~l~--~~~dai~~~~D~~a~g~~~ 203 (295)
T 3lft_A 134 KTIGALYSSSEDNSKTQVEEFKAYAEKA-----GLTVETFAVPS---TNEIASTVTVMT--SKVDAIWVPIDNTIASGFP 203 (295)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHT-----TCEEEEEEESS---GGGHHHHHHHHT--TTCSEEEECSCHHHHHTHH
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHc-----CCEEEEEecCC---HHHHHHHHHHHH--hcCCEEEECCchhHHHHHH
Confidence 4688887654322445567777777664 34444332222 234455666665 468888876554332 2
Q ss_pred HHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 112 ~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
++...+...++|++++... .+.. +-+.....+...+++..++++.
T Consensus 204 ~l~~~~~~~~i~vig~d~~----~~~~---~~Lttv~~~~~~~G~~Aa~~l~ 248 (295)
T 3lft_A 204 TVVSSNQSSKKPIYPSATA----MVEV---GGLASVVIDQHDLGVATGKMIV 248 (295)
T ss_dssp HHHHHTTTTCCCEEESSHH----HHTT---TCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEeCCHH----HHhc---CcEEEEecCHHHHHHHHHHHHH
Confidence 2344555678999977532 2222 3455677788888888887763
No 340
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=31.39 E-value=1.6e+02 Score=26.01 Aligned_cols=68 Identities=12% Similarity=0.084 Sum_probs=48.1
Q ss_pred cCCeEEEEEEEeCCCCC-CcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh-CCceEEEEEec
Q 004136 165 YNWRRVAAIYEDNVYGG-DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQA 240 (771)
Q Consensus 165 ~~w~~v~ii~~~~~~g~-~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~~~vIv~~~~ 240 (771)
|.--++++|...|+-|. .+.-...+.+.+++.| .++.....++.+. ..+.+.+++..+ .++|+|+. .+
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G-~~v~~~~iv~Dd~------~~i~~~l~~~~~~~~~DlVit-tG 80 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAG-HKVTSYEIVKDDK------ESIQQAVLAGYHKEDVDVVLT-NG 80 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHT-CEEEEEEEECSSH------HHHHHHHHHHHTCTTCSEEEE-EC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCC-CeEeEEEEeCCCH------HHHHHHHHHHHhcCCCCEEEE-cC
Confidence 45568999988776431 0334567888999999 8888777766544 678888887765 37899998 54
No 341
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=31.32 E-value=52 Score=32.03 Aligned_cols=71 Identities=7% Similarity=0.043 Sum_probs=46.5
Q ss_pred HHHHHHHHHC-----CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeeeecccceeeccEEEEEecCCCC
Q 004136 493 ELFRLVVDHL-----NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEE 567 (771)
Q Consensus 493 ~l~~~~a~~l-----~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~v~~~~~~ 567 (771)
.+++++++.+ |.+++|.. +.-.+.+.++.+|.+|++.++..++.+..+.---..|+...++++++++....
T Consensus 49 p~~~~~a~~f~~~~p~v~v~~~~----~GSg~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n~~ 124 (279)
T 4gd5_A 49 PVMEAEAEAFKTKKPDVSIEINQ----IGSSAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNNPV 124 (279)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEE----CCHHHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTCSC
T ss_pred HHHHHHHHHHHHHCCCceEEEee----CCcHHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCCcc
Confidence 4555555443 55544432 23567899999999999988777665433222223578889999999877653
No 342
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=31.08 E-value=75 Score=30.11 Aligned_cols=55 Identities=7% Similarity=0.040 Sum_probs=31.3
Q ss_pred cCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEE-EEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEE
Q 004136 165 YNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEI-QSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (771)
Q Consensus 165 ~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i-~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~ 237 (771)
...++|++.. | ......+.+.+...| ..- .....+ .+..+.++.+.+...|+++.
T Consensus 135 L~g~~v~v~~-----g--~~~~~~l~~~~~~~g-~~~~~~~~~~----------~~~~~~~~~l~~G~vDa~~~ 190 (259)
T 4dz1_A 135 LNKYSIGYPR-----G--MAYSDLIKNDLEPKG-YYSLSKVKLY----------PTYNETMADLKNGNLDLAFI 190 (259)
T ss_dssp GGGSCEEEET-----T--STHHHHHHHHTGGGT-SCCGGGCEEE----------SSHHHHHHHHHHTSCSEEEE
T ss_pred hCCCEEEEeC-----C--cHHHHHHHHhccccc-ccccceeEec----------CCHHHHHHHHHcCCCCEEEe
Confidence 3456787642 2 333556666666666 310 000111 12566778888889999888
No 343
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=30.92 E-value=2.3e+02 Score=26.79 Aligned_cols=94 Identities=6% Similarity=-0.033 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeC------------CCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHH
Q 004136 155 MKCIADLARKYNWRRVAAIYEDN------------VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRG 222 (771)
Q Consensus 155 ~~a~~~~l~~~~w~~v~ii~~~~------------~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~ 222 (771)
....++.++..|.+.|=+..... ... ....+.+++.+++.| +++.......... ...+..
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g-l~i~~~~~~~~~~-----~~~~~~ 95 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLD--AQTQKEIKELAASKG-IKIVGTGVYVAEK-----SSDWEK 95 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCC--HHHHHHHHHHHHHTT-CEEEEEEEECCSS-----TTHHHH
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCC--HHHHHHHHHHHHHcC-CeEEEEeccCCcc-----HHHHHH
Confidence 45667778888988887764321 122 334788999999999 8887654432211 146888
Q ss_pred HHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCC
Q 004136 223 ELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (771)
Q Consensus 223 ~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~ 257 (771)
.+...+.-+++.|++ ....+....+...|++.|+
T Consensus 96 ~i~~A~~lGa~~v~~-~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 96 MFKFAKAMDLEFITC-EPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HHHHHHHTTCSEEEE-CCCGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCEEEe-cCCHHHHHHHHHHHHHhCC
Confidence 888888889999999 7666677777777777775
No 344
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=30.82 E-value=1.4e+02 Score=28.30 Aligned_cols=37 Identities=16% Similarity=0.029 Sum_probs=26.3
Q ss_pred HHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEe
Q 004136 495 FRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVG 534 (771)
Q Consensus 495 ~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~ 534 (771)
++...+.-|.++++ ++.+ .+.....+|.+|++|+...
T Consensus 21 ~~~~~~~~Gl~ve~--~~f~-d~~~~n~AL~~G~iD~n~f 57 (241)
T 1xs5_A 21 AKEEVKKQHIELRI--VEFT-NYVALNEAVMRGDILMNFF 57 (241)
T ss_dssp HHHHHHTTTEEEEE--EECS-CHHHHHHHHHHTSSSEEEE
T ss_pred HHHHHHHcCCeEEE--EEcC-ChHHHHHHHHcCCCCEecc
Confidence 34455566877544 4443 4889999999999999753
No 345
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=30.66 E-value=2.2e+02 Score=26.62 Aligned_cols=163 Identities=13% Similarity=0.216 Sum_probs=97.8
Q ss_pred EEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHHHH
Q 004136 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (771)
Q Consensus 35 I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~v~ 114 (771)
.+|.++.|.+ ++..-++-++.+.+. ..++.+.+. +-..++..+++++..+++.+||.-+. ++..+.
T Consensus 13 ~~ii~i~~~~-----~L~~~~~~i~~e~~~-----~~~I~vi~~--~le~av~~a~~~~~~~~~dVIISRGg--ta~~Lr 78 (225)
T 2pju_A 13 KPVIWTVSVT-----RLFELFRDISLEFDH-----LANITPIQL--GFEKAVTYIRKKLANERCDAIIAAGS--NGAYLK 78 (225)
T ss_dssp CCEEEEECCH-----HHHHHHHHHHTTTTT-----TCEEEEECC--CHHHHHHHHHHHTTTSCCSEEEEEHH--HHHHHH
T ss_pred CCEEEEEchH-----HHHHHHHHHHHhhCC-----CceEEEecC--cHHHHHHHHHHHHhcCCCeEEEeCCh--HHHHHH
Confidence 4688888774 444444444443333 234455553 35678888888874456999995433 333333
Q ss_pred HhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHh
Q 004136 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ 194 (771)
Q Consensus 115 ~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~ 194 (771)
+..++|+|....+ .....+++... +.++ ++++++...+.. . ..+.+.+.+
T Consensus 79 ---~~~~iPVV~I~vs--------------------~~Dil~aL~~a-~~~~-~kIavVg~~~~~---~-~~~~i~~ll- 128 (225)
T 2pju_A 79 ---SRLSVPVILIKPS--------------------GYDVLQFLAKA-GKLT-SSIGVVTYQETI---P-ALVAFQKTF- 128 (225)
T ss_dssp ---TTCSSCEEEECCC--------------------HHHHHHHHHHT-TCTT-SCEEEEEESSCC---H-HHHHHHHHH-
T ss_pred ---hhCCCCEEEecCC--------------------HHHHHHHHHHH-HhhC-CcEEEEeCchhh---h-HHHHHHHHh-
Confidence 3467999866544 22334444443 3444 589999887653 1 255566555
Q ss_pred ccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHHHHHHHHHHHcCCCC
Q 004136 195 NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (771)
Q Consensus 195 ~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~ 259 (771)
| .++.... +.. ..+....+.++++.+.++|+- ... ..+.|++.|+.+
T Consensus 129 --~-~~i~~~~-~~~-------~ee~~~~i~~l~~~G~~vVVG-~~~------~~~~A~~~Gl~~ 175 (225)
T 2pju_A 129 --N-LRLDQRS-YIT-------EEDARGQINELKANGTEAVVG-AGL------ITDLAEEAGMTG 175 (225)
T ss_dssp --T-CCEEEEE-ESS-------HHHHHHHHHHHHHTTCCEEEE-SHH------HHHHHHHTTSEE
T ss_pred --C-CceEEEE-eCC-------HHHHHHHHHHHHHCCCCEEEC-CHH------HHHHHHHcCCcE
Confidence 3 4444322 221 157899999999999999877 322 256788999865
No 346
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=30.49 E-value=2e+02 Score=27.53 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=68.7
Q ss_pred EEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHh-c-C-CeEEEEcCCchHhHH
Q 004136 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELIN-K-E-KVKVIAGMETWEETA 111 (771)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~-~-~-~v~aviGp~~s~~~~ 111 (771)
+||++.... ......-..|++-|+++.+-.... .++ .....+...+.+.+.+++. . . ++.+|+.... ..+.
T Consensus 127 ~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~---~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d-~~a~ 201 (287)
T 3bbl_A 127 RIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIET---GYI-LRGEGTFEVGRAMTLHLLDLSPERRPTAIMTLND-TMAI 201 (287)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCG---GGE-EECCSSHHHHHHHHHHHHTSCTTTSCSEEEESSH-HHHH
T ss_pred eEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCh---hhE-EeCCCCHHHHHHHHHHHHhhCCCCCCcEEEECCc-HHHH
Confidence 577776443 223445667888888775321111 111 1234577788888899985 3 3 6889997544 3344
Q ss_pred HHHHhhccCC--cc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 112 VVAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 112 ~v~~~~~~~~--iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
.+...+...+ +| +++.... + ......|.+..+..+...+++..++.+.
T Consensus 202 g~~~al~~~G~~vP~di~vig~d~~---~-~~~~~~p~lttv~~~~~~~g~~a~~~l~ 255 (287)
T 3bbl_A 202 GAMAAARERGLTIGTDLAIIGFDDA---P-MVQYLFPPLSSVRQPIAEAGRKCIELLV 255 (287)
T ss_dssp HHHHHHHHTTCCBTTTBEEEEESCC---T-TGGGSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEECCc---h-HhhccCCCCceEcCCHHHHHHHHHHHHH
Confidence 4444444433 34 7777654 2 2222235566677777888887777763
No 347
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=29.98 E-value=1.4e+02 Score=28.07 Aligned_cols=114 Identities=10% Similarity=-0.013 Sum_probs=68.5
Q ss_pred EEEEEEeC--CCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHHH
Q 004136 36 KIGAIVDA--NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (771)
Q Consensus 36 ~IG~i~p~--s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~v 113 (771)
+||++... +......-..|++.|+++.+- +.+. .....+...+.+.+.+++ +.++.+|+.... ..+..+
T Consensus 117 ~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~-----~~~~--~~~~~~~~~~~~~~~~~l-~~~~~ai~~~~d-~~A~g~ 187 (255)
T 1byk_A 117 NISYLGVPHSDVTTGKRRHEAYLAFCKAHKL-----HPVA--ALPGLAMKQGYENVAKVI-TPETTALLCATD-TLALGA 187 (255)
T ss_dssp CEEEECCCTTSTTTTHHHHHHHHHHHHHTTC-----CCEE--ECCCSCHHHHHHHSGGGC-CTTCCEEEESSH-HHHHHH
T ss_pred eEEEEecCCCCcccHHHHHHHHHHHHHHcCC-----Ccce--eecCCccchHHHHHHHHh-cCCCCEEEEeCh-HHHHHH
Confidence 57777643 223445667888888877532 2222 234456777888888888 467889997543 334444
Q ss_pred HHhhccC---CccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHH
Q 004136 114 AEIASRV---QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (771)
Q Consensus 114 ~~~~~~~---~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l 162 (771)
...+.+. ++.++++... .+.....|.+..+..+...+++..++.+
T Consensus 188 ~~al~~~g~~di~vig~d~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l 235 (255)
T 1byk_A 188 SKYLQEQRIDTLQLASVGNT----PLMKFLHPEIVTVDPGYAEAGRQAACQL 235 (255)
T ss_dssp HHHHHHTTCCSCEEEEECCC----HHHHHHCTTSEEEBCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEEeCCc----hhhhccCCCcceEecCHHHHHHHHHHHH
Confidence 4444443 5677777644 2222122445566677778888777766
No 348
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=29.95 E-value=65 Score=31.03 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=45.5
Q ss_pred HHHHHcCCeEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeE-EEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEE
Q 004136 160 DLARKYNWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSE-IQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236 (771)
Q Consensus 160 ~~l~~~~w~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~-i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv 236 (771)
+-++.-+-++|+++..+ ++|. ....+.+.+.+++.| .. +.... ... + .......++.+.+.+.|.|+
T Consensus 3 r~L~~~~~~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~---~~~---~-~~~~~~~~~~l~~~~vdgiI 72 (277)
T 3hs3_A 3 LTLYQKKSKMIGIIIPDLNNRFY--AQIIDGIQEVIQKEG-YTALISFS---TNS---D-VKKYQNAIINFENNNVDGII 72 (277)
T ss_dssp -----CCCCEEEEEESCTTSHHH--HHHHHHHHHHHHHTT-CEEEEEEC---SSC---C-HHHHHHHHHHHHHTTCSEEE
T ss_pred hhhhcCCCCEEEEEeCCCCChhH--HHHHHHHHHHHHHCC-CCEEEEEe---CCC---C-hHHHHHHHHHHHhCCCCEEE
Confidence 34455566789999876 3455 677889999999999 77 54321 111 1 13455667788888999999
Q ss_pred EEec
Q 004136 237 VLQA 240 (771)
Q Consensus 237 ~~~~ 240 (771)
+ ..
T Consensus 73 i-~~ 75 (277)
T 3hs3_A 73 T-SA 75 (277)
T ss_dssp E-EC
T ss_pred E-cc
Confidence 8 55
No 349
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=29.84 E-value=51 Score=31.74 Aligned_cols=79 Identities=8% Similarity=-0.029 Sum_probs=50.8
Q ss_pred CCeEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChh
Q 004136 166 NWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (771)
Q Consensus 166 ~w~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~ 243 (771)
+-++|+++..+ ++|. ....+.+.+.+++.| ..+..... ..+ .......++.+.+.++|.|++ ....
T Consensus 7 ~~~~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~~-~~~------~~~~~~~~~~l~~~~~dgiIi-~~~~- 74 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFF--TLIARGVEDVALAHG-YQVLIGNS-DND------IKKAQGYLATFVSHNCTGMIS-TAFN- 74 (277)
T ss_dssp ---CEEEEESCTTSHHH--HHHHHHHHHHHHHTT-CCEEEEEC-TTC------HHHHHHHHHHHHHTTCSEEEE-CGGG-
T ss_pred CCCEEEEEECCCCCHHH--HHHHHHHHHHHHHCC-CEEEEEeC-CCC------HHHHHHHHHHHHhCCCCEEEE-ecCC-
Confidence 44678888875 3455 677889999999999 77654321 111 134566778888889999999 6522
Q ss_pred HHHHHHH-HHHHcCCC
Q 004136 244 MTIHLFT-EANRMGLV 258 (771)
Q Consensus 244 ~~~~il~-~a~~~g~~ 258 (771)
...++ .+.+.|++
T Consensus 75 --~~~~~~~l~~~~iP 88 (277)
T 3e61_A 75 --ENIIENTLTDHHIP 88 (277)
T ss_dssp --HHHHHHHHHHC-CC
T ss_pred --hHHHHHHHHcCCCC
Confidence 33466 77777753
No 350
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=29.60 E-value=1.8e+02 Score=27.78 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=64.7
Q ss_pred EEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEE-EEecCCCCHHHHHHHHHHHHhc-CCeEEEEcCCchHhHHH
Q 004136 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSL-QIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (771)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l-~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~s~~~~~ 112 (771)
+||++.... ......-..|++.++++.+-. +.. .+.....+...+.+.+.+++.. .++.+|+.... ..+..
T Consensus 128 ~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~a~g 201 (289)
T 1dbq_A 128 EIGVIPGPLERNTGAGRLAGFMKAMEEAMIK-----VPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGD-IMAMG 201 (289)
T ss_dssp SEEEECCC------CHHHHHHHHHHHHTTCC-----CCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEESCH-HHHHH
T ss_pred eEEEEecCCccccHHHHHHHHHHHHHHCCCC-----CChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEECCc-HHHHH
Confidence 466665432 223345567777777664321 110 0122334667777888888853 47889987543 34444
Q ss_pred HHHhhccCC--cc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 113 VAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 113 v~~~~~~~~--iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
+...+.+.+ +| +++.... +. .....|.+..+..+...+++..++.+.
T Consensus 202 ~~~al~~~G~~vP~di~vvg~d~~---~~-~~~~~p~lttv~~~~~~~g~~a~~~l~ 254 (289)
T 1dbq_A 202 ALCAADEMGLRVPQDVSLIGYDNV---RN-ARYFTPALTTIHQPKDSLGETAFNMLL 254 (289)
T ss_dssp HHHHHHHTTCCTTTTCEEEEEECC---TT-GGGSSSCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEeeCCc---hH-hccCCCccccccCCHHHHHHHHHHHHH
Confidence 444444443 34 7777755 22 332234556677777888887777663
No 351
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=29.33 E-value=72 Score=31.67 Aligned_cols=85 Identities=9% Similarity=-0.061 Sum_probs=51.2
Q ss_pred CceEEEecChHHHH------HHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee-ee
Q 004136 683 NLKVGCVDDSFVKK------YLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN-TY 755 (771)
Q Consensus 683 ~~~~g~~~~s~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~-~~ 755 (771)
.+++|+..+..... ++++...-..-+++.+.+ ..+.+++|..|++|+.+......-....+..+ ++.+. ..
T Consensus 30 ~lrig~~~~~~p~~~a~~~g~~~~~~~g~~v~~~~~~~-~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~-~~~v~~~~ 107 (324)
T 3ksx_A 30 QLRIGYQKAVSSLVLAKQHRLLEQRFPRTKITWVEFPA-GPQLLEALNVGSIDLGGAGDIPPLFAQAAGAD-LLYVGWVP 107 (324)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHCTTSEEEEEEESS-HHHHHHHHHTTSCSEEEEESHHHHHHHHTTCC-EEEEEEEC
T ss_pred eEEEEecCCchhHHHHHhhCHHHHhcCCCceEEEECCC-HHHHHHHHHCCCCCEEeecCHHHHHHHhcCCC-EEEEEEec
Confidence 47888876654222 222211011224445666 78899999999999976654433333334444 77777 33
Q ss_pred -eeceEEEEEecCCC
Q 004136 756 -RFGGLGFVSNIIYS 769 (771)
Q Consensus 756 -~~~~~g~~~~k~s~ 769 (771)
...+.+++.+++|+
T Consensus 108 ~~~~~~~lvv~~~s~ 122 (324)
T 3ksx_A 108 PTPKAETILVPSKSA 122 (324)
T ss_dssp CCGGGEEEEEETTCS
T ss_pred CCCCceEEEEeCCCC
Confidence 33578999999876
No 352
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=29.25 E-value=1.4e+02 Score=29.54 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=74.3
Q ss_pred EEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCC----CHHHHHHHHHHHHhcCCeEEEEcCCchHhH
Q 004136 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR----DPFQAATAAQELINKEKVKVIAGMETWEET 110 (771)
Q Consensus 35 I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~----~~~~a~~~~~~li~~~~v~aviGp~~s~~~ 110 (771)
-.|+.+|..++ .+...+|+.|+.++ ||..+.+...++.- +....++....+ .-.+.++=.+.. ...
T Consensus 37 k~la~lF~e~S---TRTR~SFE~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~--~~D~iviR~~~~-~~~ 106 (304)
T 3r7f_A 37 KFAANLFFEPS---TRTRFSFEVAEKKL----GMNVLNLDGTSTSVQKGETLYDTIRTLESI--GVDVCVIRHSED-EYY 106 (304)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT----TCEEEEEETTSTTSCSSSCHHHHHHHHHHH--TCCEEEEECSST-TCH
T ss_pred CEEEEEecCCC---hhHHHhHHHHHHHC----CCeEEEECcccccCCCCCCHHHHHHHHHHh--cCCEEEEecCCh-hHH
Confidence 45888887763 67888999999998 45566664444332 222333333333 012333334432 223
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHH---HHc---CCeEEEEEEEeCCCCCCcc
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY---NWRRVAAIYEDNVYGGDSG 184 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l---~~~---~w~~v~ii~~~~~~g~~~~ 184 (771)
. .+++..++|+|..+.+ +...| .+++++++ +++ ...+|+++.+- .+ ..
T Consensus 107 ~---~la~~~~vPVINagdg-------~~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD~-~~---~r 160 (304)
T 3r7f_A 107 E---ELVSQVNIPILNAGDG-------CGQHP------------TQSLLDLMTIYEEFNTFKGLTVSIHGDI-KH---SR 160 (304)
T ss_dssp H---HHHHHCSSCEEESCCT-------TSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESCC-TT---CH
T ss_pred H---HHHHhCCCCEEeCCCC-------CCcCc------------HHHHHHHHHHHHHhCCCCCCEEEEEcCC-CC---cc
Confidence 3 3455678999976532 11222 34556554 343 45678777532 12 34
Q ss_pred hHHHHHHHHhccCCeEEEE
Q 004136 185 KLALLAEALQNVSSSEIQS 203 (771)
Q Consensus 185 ~~~~l~~~~~~~g~~~i~~ 203 (771)
.+..+...+...| .++..
T Consensus 161 va~Sl~~~~~~~G-~~v~~ 178 (304)
T 3r7f_A 161 VARSNAEVLTRLG-ARVLF 178 (304)
T ss_dssp HHHHHHHHHHHTT-CEEEE
T ss_pred hHHHHHHHHHHcC-CEEEE
Confidence 5777888888888 77654
No 353
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=29.19 E-value=62 Score=31.40 Aligned_cols=84 Identities=7% Similarity=-0.053 Sum_probs=50.8
Q ss_pred HHcCCeEEEEEEEe--C--CCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEE
Q 004136 163 RKYNWRRVAAIYED--N--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVL 238 (771)
Q Consensus 163 ~~~~w~~v~ii~~~--~--~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~ 238 (771)
+.-+-+.|+++..+ + +|. ....+.+.+++++.| ..+.....-. .. ......+..+.+.+.|.|++
T Consensus 4 ~~~~s~~Igvv~~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~~~-~~------~~~~~~~~~l~~~~vdgiIi- 72 (288)
T 3gv0_A 4 RTGKTNVIALVLSVDEELMGFT--SQMVFGITEVLSTTQ-YHLVVTPHIH-AK------DSMVPIRYILETGSADGVII- 72 (288)
T ss_dssp ---CCCEEEEECBCCCCSSCHH--HHHHHHHHHHHTTSS-CEEEECCBSS-GG------GTTHHHHHHHHHTCCSEEEE-
T ss_pred ccCCCCEEEEEecCCccccHHH--HHHHHHHHHHHHHcC-CEEEEecCCc-ch------hHHHHHHHHHHcCCccEEEE-
Confidence 33455789999875 2 555 777889999999999 7765432111 11 12234444566678999988
Q ss_pred ecChhHHHHHHHHHHHcCCC
Q 004136 239 QASLDMTIHLFTEANRMGLV 258 (771)
Q Consensus 239 ~~~~~~~~~il~~a~~~g~~ 258 (771)
...... ...++.+.+.|++
T Consensus 73 ~~~~~~-~~~~~~l~~~~iP 91 (288)
T 3gv0_A 73 SKIEPN-DPRVRFMTERNMP 91 (288)
T ss_dssp ESCCTT-CHHHHHHHHTTCC
T ss_pred ecCCCC-cHHHHHHhhCCCC
Confidence 543222 2456777777753
No 354
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=29.11 E-value=3.7e+02 Score=25.40 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=68.7
Q ss_pred EEEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEcCCchHhHHH
Q 004136 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (771)
Q Consensus 35 I~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~s~~~~~ 112 (771)
=+|+++.... ......-..|++-++++... .+.-. .....+...+.+.+.+++.. .++.+|+..... .+..
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~-----~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~a~g 204 (289)
T 3brs_A 132 GKIGVISFVKNSKTAMDREEGLKIGLSDDSN-----KIEAI-YYCDSNYDKAYDGTVELLTKYPDISVMVGLNQY-SATG 204 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHGGGGG-----GEEEE-EECTTCHHHHHHHHHHHHHHCTTEEEEEESSHH-HHHH
T ss_pred ceEEEEECCCCCccHHHHHHHHHHHHHhCCC-----cEEee-ecCCCCHHHHHHHHHHHHHhCCCceEEEECCCc-chHH
Confidence 4688887543 23345566788877776321 22211 23445777888888888853 468999975443 3444
Q ss_pred HHHhhccCC----ccEEeecCCCCCCCccC-CCCceE-EEeecCcHHHHHHHHHHH
Q 004136 113 VAEIASRVQ----VPILSFAAPAVTPLSMS-RRWPYL-IRMASNDSEQMKCIADLA 162 (771)
Q Consensus 113 v~~~~~~~~----iP~Is~~a~~~~~~l~~-~~~p~~-fr~~p~~~~~~~a~~~~l 162 (771)
+...+.+.+ +.+++.... +.... -..|.+ ..+..+...+++..++.+
T Consensus 205 ~~~al~~~G~~~di~vvg~d~~---~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l 257 (289)
T 3brs_A 205 AARAIKDMSLEAKVKLVCIDSS---MEQIQYLEEGIFEAMVVQKPFNIGYLGVEKA 257 (289)
T ss_dssp HHHHHHHTTCTTTSEEEEEESC---SCC-----CCSCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEEECCC---HHHHHHHHCCceEEEEecChHHHHHHHHHHH
Confidence 445554444 678887755 22122 121345 666677778888777766
No 355
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=29.10 E-value=1.2e+02 Score=29.92 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=25.4
Q ss_pred HHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEE
Q 004136 495 FRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAV 533 (771)
Q Consensus 495 ~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~ 533 (771)
++...++.|.++++.... .+..+...|.+|++|+..
T Consensus 56 ~~~~~~~~G~~Ve~~~f~---~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 56 VKELAKKDDIDVEIKHFS---DYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHHGGGTCCEEEEECS---STTSHHHHHHTTSSSEEE
T ss_pred HHHHHHHcCCeEEEEEeC---ChHHHHHHHHcCCCCEEc
Confidence 344555559885555433 367789999999999975
No 356
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=28.98 E-value=1.7e+02 Score=29.12 Aligned_cols=119 Identities=8% Similarity=0.030 Sum_probs=68.8
Q ss_pred EEEEEEeCC--CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEcCCchHhHHH
Q 004136 36 KIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (771)
Q Consensus 36 ~IG~i~p~s--~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~s~~~~~ 112 (771)
+||++.... ......-..|++.|+++.+-.. . ...+.....+...+.+.+.+++.. .++.+|+.... ..+..
T Consensus 187 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~---~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd-~~A~g 261 (344)
T 3kjx_A 187 RIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEI---E-DREFYSGGSALAKGREMTQAMLERSPDLDFLYYSND-MIAAG 261 (344)
T ss_dssp SCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCC---S-CEEECSSCCCHHHHHHHHHHHHHHSTTCCEEEESSH-HHHHH
T ss_pred eEEEEecCcccCccHHHHHHHHHHHHHHcCCCC---C-hheEEeCCCCHHHHHHHHHHHHhcCCCCCEEEECCH-HHHHH
Confidence 456665442 2223445577777777653321 1 122234556778888888888854 37889996443 33444
Q ss_pred HHHhhccC--Ccc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 113 VAEIASRV--QVP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 113 v~~~~~~~--~iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
+...+.+. .+| +|++... .+.....|.+..+..+...+++..++.+.
T Consensus 262 ~~~al~~~g~~vP~disvvg~D~~----~~~~~~~p~lttv~~~~~~~g~~av~~l~ 314 (344)
T 3kjx_A 262 GLLYLLEQGIDIPGQIGLAGFNNV----ELLQGLPRKLATMDACRLEIGRKAAEIIA 314 (344)
T ss_dssp HHHHHHHTTCCTTTTCEEECSBCC----GGGGGSSSCCBEEBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEEECCh----HHHhccCCCccEEeCCHHHHHHHHHHHHH
Confidence 44444444 334 6655432 33443346666777788888888887773
No 357
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=28.36 E-value=48 Score=35.09 Aligned_cols=49 Identities=10% Similarity=0.003 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHH-HHHhcCCeEEEEc
Q 004136 51 AITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQ-ELINKEKVKVIAG 103 (771)
Q Consensus 51 ~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~-~li~~~~v~aviG 103 (771)
....++-.+++.++..||++|+++..+. ....+.+. .+...+..+++..
T Consensus 40 ~~~~~~~~~~~F~~~~pgi~V~~~~~~~----~~~~~kl~~~~~sg~~pDv~~~ 89 (458)
T 3uor_A 40 EAEVVAELVADFEKQNPTIHVDVQNIPM----TAAHEKLLTAFAADGLPDVCQL 89 (458)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEEEECCH----HHHHHHHHHHHHTTCCCSEEEE
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEEEcCh----HHHHHHHHHHHhCCCCCCEEEE
Confidence 4567888999999998899999887642 12222222 2333445666654
No 358
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=28.28 E-value=3.3e+02 Score=26.31 Aligned_cols=88 Identities=11% Similarity=0.065 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceE
Q 004136 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234 (771)
Q Consensus 155 ~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~v 234 (771)
...++......|..-+.++.+...++ +..+.++..-+..+ +-|.... |-.+. + ++.+.+..++|.
T Consensus 81 p~~~A~~y~~~GA~~IsVltd~~~f~---Gs~~~L~~ir~~v~-lPVl~Kd-fi~d~--------~--qi~ea~~~GAD~ 145 (272)
T 3tsm_A 81 PPALAKAYEEGGAACLSVLTDTPSFQ---GAPEFLTAARQACS-LPALRKD-FLFDP--------Y--QVYEARSWGADC 145 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEECCSTTTC---CCHHHHHHHHHTSS-SCEEEES-CCCST--------H--HHHHHHHTTCSE
T ss_pred HHHHHHHHHHCCCCEEEEeccccccC---CCHHHHHHHHHhcC-CCEEECC-ccCCH--------H--HHHHHHHcCCCE
Confidence 45567777788999999998766553 44566655555555 5554322 21111 2 566778889999
Q ss_pred EEEEec---ChhHHHHHHHHHHHcCCC
Q 004136 235 FIVLQA---SLDMTIHLFTEANRMGLV 258 (771)
Q Consensus 235 Iv~~~~---~~~~~~~il~~a~~~g~~ 258 (771)
|++ .+ ...+...+++.++++||.
T Consensus 146 VlL-i~a~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 146 ILI-IMASVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp EEE-ETTTSCHHHHHHHHHHHHHTTCE
T ss_pred EEE-cccccCHHHHHHHHHHHHHcCCe
Confidence 998 54 345788999999999974
No 359
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=28.22 E-value=1.8e+02 Score=25.26 Aligned_cols=90 Identities=8% Similarity=0.008 Sum_probs=51.8
Q ss_pred eEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecCh--hHH
Q 004136 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL--DMT 245 (771)
Q Consensus 168 ~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~--~~~ 245 (771)
+++.|+|... +|.-+.+++.+.+.+++.| .++... .+.... +....+..+. +.|.|++ .+.. ...
T Consensus 5 ~kv~IvY~S~-~GnT~~iA~~ia~~l~~~g-~~v~~~-~~~~~~-------~~~~~~~~~~--~~d~ii~-Gspty~g~~ 71 (159)
T 3fni_A 5 TSIGVFYVSE-YGYSDRLAQAIINGITKTG-VGVDVV-DLGAAV-------DLQELRELVG--RCTGLVI-GMSPAASAA 71 (159)
T ss_dssp CEEEEEECTT-STTHHHHHHHHHHHHHHTT-CEEEEE-ESSSCC-------CHHHHHHHHH--TEEEEEE-ECCBTTSHH
T ss_pred CEEEEEEECC-ChHHHHHHHHHHHHHHHCC-CeEEEE-ECcCcC-------CHHHHHHHHH--hCCEEEE-EcCcCCCCc
Confidence 5788998764 4521456788888888888 765432 222210 2444444554 4777777 4432 222
Q ss_pred --HHHHHHHHHcCCCCCCeEEEeeCcc
Q 004136 246 --IHLFTEANRMGLVGKDSVWIVTNTV 270 (771)
Q Consensus 246 --~~il~~a~~~g~~~~~~~~i~~~~~ 270 (771)
..++..+....+.++.+..+++.+|
T Consensus 72 p~~~~l~~l~~~~~~~k~va~fgs~g~ 98 (159)
T 3fni_A 72 SIQGALSTILGSVNEKQAVGIFETGGG 98 (159)
T ss_dssp HHHHHHHHHHHHCCTTSEEEEECCSSS
T ss_pred cHHHHHHHHHhhcccCCEEEEEEcCCC
Confidence 4667777666666665555555443
No 360
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=28.02 E-value=1.8e+02 Score=28.68 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=68.9
Q ss_pred EEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcCCchHhHHHHH
Q 004136 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (771)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~s~~~~~v~ 114 (771)
+||++.... ......-..|++.|+++.+-.... .+ +.....+...+.+.+.+++.. ++.+|+... ...+..+.
T Consensus 182 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~---~~-~~~~~~~~~~~~~~~~~ll~~-~~~ai~~~~-d~~A~g~~ 255 (332)
T 2o20_A 182 KIAYIMGSLKDVENTERMVGYQEALLEANIEFDE---NL-VFEGNYSYEQGKALAERLLER-GATSAVVSH-DTVAVGLL 255 (332)
T ss_dssp SEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCG---GG-EECSCCSHHHHHHHHHHHHHT-TCCEEEESC-HHHHHHHH
T ss_pred eEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCh---hh-EEeCCCCHHHHHHHHHHHhcc-CCCEEEECC-hHHHHHHH
Confidence 577776543 223345567788777765321110 11 123345677788888888855 889999753 34444455
Q ss_pred HhhccCC--cc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 115 EIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 115 ~~~~~~~--iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
..+.+.| +| ++++... .+.....|.+..+..+...++...++.+.
T Consensus 256 ~al~~~G~~vP~disvig~D~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 306 (332)
T 2o20_A 256 SAMMDKGVKVPEDFEIISGANS----PITQYTYPTLTSVNQPLYDLGAVAMRLLT 306 (332)
T ss_dssp HHHHHTTCCTTTTCEEEESSCC----GGGGSBSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCEEEEEeCCh----HHHhhCCCceEEEeeCHHHHHHHHHHHHH
Confidence 5555544 34 6665543 22332335566777777888888777763
No 361
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=27.91 E-value=1.4e+02 Score=29.46 Aligned_cols=128 Identities=15% Similarity=0.245 Sum_probs=75.7
Q ss_pred EEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCC----CCHHHHHHHHHHHHhcCCeEEEEcCCchHhH
Q 004136 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN----RDPFQAATAAQELINKEKVKVIAGMETWEET 110 (771)
Q Consensus 35 I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~----~~~~~a~~~~~~li~~~~v~aviGp~~s~~~ 110 (771)
-.|+.+|..++ .+...+|+.|..++ ||..+.+...++. -+....++...... .+.++=.+. .
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~---D~iviR~~~----~ 111 (309)
T 4f2g_A 46 RTLAMIFEKSS---TRTRLSFEAGIFQL----GGHAVFMSTRDTQLGRGEPVEDSAQVISRMV---DIIMIRTFE----Q 111 (309)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEECCSSCEETBEECHHHHHHHHHHHC---SEEEEECSC----H
T ss_pred ceEEEEecCCC---hhhHhhHHHHHHHc----CCeEEEcCcccccCCCCCCHHHHHHHHHHhC---CEEEEecCC----H
Confidence 45888987763 78889999999998 4445544433321 12334444444442 233333443 2
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHH---HHc---CCeEEEEEEEeCCCCCCcc
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY---NWRRVAAIYEDNVYGGDSG 184 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l---~~~---~w~~v~ii~~~~~~g~~~~ 184 (771)
..+..+++..++|+|..++. ...| .+++++++ +++ ...+|+++.+ + ..
T Consensus 112 ~~~~~lA~~~~vPVINag~~--------~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD----~--~~ 165 (309)
T 4f2g_A 112 DIIQRFAENSRVPVINGLTN--------EYHP------------CQVLADIFTYYEHRGPIRGKTVAWVGD----A--NN 165 (309)
T ss_dssp HHHHHHHHTCSSCEEEEECS--------SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----C--CH
T ss_pred HHHHHHHHhCCCCEEECCCC--------ccCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC----C--cc
Confidence 34455667789999987733 2222 34555554 343 4567887764 2 34
Q ss_pred hHHHHHHHHhccCCeEEEE
Q 004136 185 KLALLAEALQNVSSSEIQS 203 (771)
Q Consensus 185 ~~~~l~~~~~~~g~~~i~~ 203 (771)
.+..+...+...| .++..
T Consensus 166 va~Sl~~~~~~~G-~~v~~ 183 (309)
T 4f2g_A 166 MLYTWIQAARILD-FKLQL 183 (309)
T ss_dssp HHHHHHHHHHHHT-CEEEE
T ss_pred hHHHHHHHHHHcC-CEEEE
Confidence 5777888888888 76654
No 362
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=27.62 E-value=3.9e+02 Score=25.56 Aligned_cols=100 Identities=11% Similarity=0.031 Sum_probs=59.8
Q ss_pred HHHHHHHH-HcC-CeEEEEEEEeCCCCCCcchHHHHHHH--------Hhcc-CCeEEEEeeecCCCCCCCCchHHHHHHH
Q 004136 156 KCIADLAR-KYN-WRRVAAIYEDNVYGGDSGKLALLAEA--------LQNV-SSSEIQSRLVLPPISSISDPKEAVRGEL 224 (771)
Q Consensus 156 ~a~~~~l~-~~~-w~~v~ii~~~~~~g~~~~~~~~l~~~--------~~~~-g~~~i~~~~~~~~~~~~~d~~~~~~~~l 224 (771)
+.+..+++ +.+ -.+|.+-....+.- .-....+... ++.. | +++.+--. . ......+
T Consensus 107 ~~~~~~l~~~~~~~~~Vvlatv~gD~H--diG~~iv~~~k~~~~~~~L~~~~G-~eVi~LG~---~-------vp~e~iv 173 (262)
T 1xrs_B 107 EETDEYIKENIGRKIVVVGASTGTDAH--TVGIDAIMNMKGYAGHYGLERYEM-IDAYNLGS---Q-------VANEDFI 173 (262)
T ss_dssp HHHHHHHHHHTCSCEEEEEEEBTTCCC--CHHHHHHHSTTCBTTBCCGGGCTT-EEEEECCS---S-------BCHHHHH
T ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCc--hHHHHHHhhhhcccchHHHHhcCC-cEEEECCC---C-------CCHHHHH
Confidence 33444443 333 23443333344432 4456667766 8899 9 88865332 1 1256677
Q ss_pred HHhhhCCceEEEEEecC-------hhHHHHHHHHHHHcCCCCCCeEEEeeCc
Q 004136 225 KKVQDKQSRVFIVLQAS-------LDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (771)
Q Consensus 225 ~~l~~~~~~vIv~~~~~-------~~~~~~il~~a~~~g~~~~~~~~i~~~~ 269 (771)
..+++.++++|.+ .+. ......+++++++.|+...--+++++..
T Consensus 174 ~aa~e~~~d~Vgl-S~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~ 224 (262)
T 1xrs_B 174 KKAVELEADVLLV-SQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPR 224 (262)
T ss_dssp HHHHHTTCSEEEE-ECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTT
T ss_pred HHHHHcCCCEEEE-EeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCc
Confidence 7788889999999 663 3446677888988887543335555544
No 363
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=27.56 E-value=21 Score=33.49 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=30.5
Q ss_pred hcCCeEEEEcCCchHhHHHHHHhhccCCccEEeec
Q 004136 94 NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFA 128 (771)
Q Consensus 94 ~~~~v~aviGp~~s~~~~~v~~~~~~~~iP~Is~~ 128 (771)
.+.++..|+||..|.-.-....+++.+++|+|+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstG 61 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSG 61 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHH
Confidence 36789999999999888888889999999999765
No 364
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=27.33 E-value=1.1e+02 Score=27.28 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=38.1
Q ss_pred eEEEEEEEeCC--CC-CCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEE
Q 004136 168 RRVAAIYEDNV--YG-GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (771)
Q Consensus 168 ~~v~ii~~~~~--~g-~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~ 237 (771)
-++++|...|. .| ..+.-...+.+.+++.| +++.....++.+. ..+.+.++++.+ .+|+|+.
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G-~~v~~~~iv~Dd~------~~I~~~l~~a~~-~~DlVit 68 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHG-YQVRRGFVVMDDL------DEIGWAFRVALE-VSDLVVS 68 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTT-CEEEEEEEECSCH------HHHHHHHHHHHH-HCSEEEE
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCC-CEEEEEEEeCCCH------HHHHHHHHHHHh-cCCEEEE
Confidence 35666666543 11 00334566778888888 7777666665443 566667766654 3788777
No 365
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=27.28 E-value=2.1e+02 Score=28.62 Aligned_cols=120 Identities=11% Similarity=0.072 Sum_probs=72.0
Q ss_pred EEEEEEeCCC-cC-chHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEcCCchHhHHH
Q 004136 36 KIGAIVDANS-QM-GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (771)
Q Consensus 36 ~IG~i~p~s~-~~-g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~s~~~~~ 112 (771)
+||++..... .. ...-..|++.|+++.+-.. .-.+...+...+...+.+.+.+++.. .++.+|+.... ..+..
T Consensus 189 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD-~~A~g 264 (355)
T 3e3m_A 189 KIVFLGEKDDDWTRGAARRAGFKRAMREAGLNP---DQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFCVSD-MPAFG 264 (355)
T ss_dssp SEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCS---CCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEESSH-HHHHH
T ss_pred eEEEEccCcccChhHHHHHHHHHHHHHHCCcCC---CccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEECCh-HHHHH
Confidence 5777776542 22 4556788888888764321 11234445556778888888888854 57889997543 33444
Q ss_pred HHHhhccC--Ccc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 113 VAEIASRV--QVP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 113 v~~~~~~~--~iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
+...+.+. .|| +|++.. ..+.....|.+-.+..+...+++..++++.
T Consensus 265 ~~~al~~~G~~vP~disvigfD~----~~~~~~~~p~lttv~~~~~~~g~~A~~~l~ 317 (355)
T 3e3m_A 265 LLSRLKSIGVAVPEQVSVVGFGN----FEVSRFASPEISTVRVDPIAIGRETGSLIL 317 (355)
T ss_dssp HHHHHHHHTCCTTTTCEEECSSC----CHHHHHSSSCCBEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEEECC----hHHHhccCCCceEEecCHHHHHHHHHHHHH
Confidence 44444443 334 555442 233333345566777888888888888774
No 366
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=27.26 E-value=95 Score=28.88 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeecc--cee---eeec--ccceeeccEEEE
Q 004136 488 DGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGN--RTE---YVEF--TQPYAESGFSMI 560 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~--r~~---~~~f--s~p~~~~~~~~~ 560 (771)
....-++++.+.++.|.++++.. ++-..++..+. +.+|+.++.-....+ ..+ .++. ..++....+.++
T Consensus 12 ~~~~~~~~~~F~~~~gi~V~~~~----~~s~~l~~~l~-~~~Dv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 86 (237)
T 2hxw_A 12 HTALKDIANKYSEKTGVKVNVNF----GPQATWFEKAK-KDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAIIL 86 (237)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEE----SSHHHHHHHHH-HHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCceEEEEe----CChHHHHHHhc-cCCCEEEeCCHHHHHHHHHhcccccCcccccccccCceEEE
Confidence 33445678888888898865532 34567888887 899999875421111 111 2322 245666677777
Q ss_pred EecCC
Q 004136 561 VPAKQ 565 (771)
Q Consensus 561 v~~~~ 565 (771)
+++..
T Consensus 87 ~~~~~ 91 (237)
T 2hxw_A 87 TQKGN 91 (237)
T ss_dssp ESTTC
T ss_pred EeCCC
Confidence 76654
No 367
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=27.23 E-value=44 Score=32.52 Aligned_cols=82 Identities=9% Similarity=-0.026 Sum_probs=52.9
Q ss_pred HcCCeEEEEEEEeC--CCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecC
Q 004136 164 KYNWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS 241 (771)
Q Consensus 164 ~~~w~~v~ii~~~~--~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~ 241 (771)
.-+-.+|+++..+. +|. ....+.+++++++.| .++..... ..+ .......++.+.+.+.|.|++ ...
T Consensus 5 ~~~~~~Igvv~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~~------~~~~~~~~~~l~~~~vdgiIi-~~~ 73 (291)
T 3egc_A 5 SKRSNVVGLIVSDIENVFF--AEVASGVESEARHKG-YSVLLANT-AED------IVREREAVGQFFERRVDGLIL-APS 73 (291)
T ss_dssp --CCCEEEEEESCTTSHHH--HHHHHHHHHHHHHTT-CEEEEEEC-TTC------HHHHHHHHHHHHHTTCSEEEE-CCC
T ss_pred cCCCcEEEEEECCCcchHH--HHHHHHHHHHHHHCC-CEEEEEeC-CCC------HHHHHHHHHHHHHCCCCEEEE-eCC
Confidence 33456889988753 354 667888999999999 77765331 111 134566777888889999998 554
Q ss_pred hhHHHHHHHHHHHcCC
Q 004136 242 LDMTIHLFTEANRMGL 257 (771)
Q Consensus 242 ~~~~~~il~~a~~~g~ 257 (771)
.. ....++.+.+.|+
T Consensus 74 ~~-~~~~~~~~~~~~i 88 (291)
T 3egc_A 74 EG-EHDYLRTELPKTF 88 (291)
T ss_dssp SS-CCHHHHHSSCTTS
T ss_pred CC-ChHHHHHhhccCC
Confidence 33 3445666665554
No 368
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=26.72 E-value=83 Score=30.79 Aligned_cols=79 Identities=5% Similarity=-0.015 Sum_probs=50.6
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecCh-hH
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL-DM 244 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~-~~ 244 (771)
.+|+++..+ +.|. ....+.+++.+++.| ..+..... .. + .......++.+.+.++|.|++ .... ..
T Consensus 3 ~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~l~~~~~--~~----~-~~~~~~~i~~l~~~~vdgiIi-~~~~~~~ 71 (306)
T 2vk2_A 3 LTVGFSQVGSESGWR--AAETNVAKSEAEKRG-ITLKIADG--QQ----K-QENQIKAVRSFVAQGVDAIFI-APVVATG 71 (306)
T ss_dssp CEEEEEECCCCSHHH--HHHHHHHHHHHHHHT-CEEEEEEC--TT----C-HHHHHHHHHHHHHHTCSEEEE-CCSSSSS
T ss_pred eEEEEEeCCCCCHHH--HHHHHHHHHHHHHcC-CEEEEeCC--CC----C-HHHHHHHHHHHHHcCCCEEEE-eCCChhh
Confidence 478888764 3355 566788889999999 87654321 11 1 133456677777778999988 5433 22
Q ss_pred HHHHHHHHHHcCC
Q 004136 245 TIHLFTEANRMGL 257 (771)
Q Consensus 245 ~~~il~~a~~~g~ 257 (771)
....++.+.+.|+
T Consensus 72 ~~~~~~~~~~~~i 84 (306)
T 2vk2_A 72 WEPVLKEAKDAEI 84 (306)
T ss_dssp CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 2456777777775
No 369
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=26.58 E-value=70 Score=31.03 Aligned_cols=81 Identities=7% Similarity=0.014 Sum_probs=50.2
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecC-hhH
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS-LDM 244 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~-~~~ 244 (771)
++|+++..+ ++|. ....+.+.+.+++.| ..+......... + ...-...++.+.+.+.|.|++ ... ...
T Consensus 2 ~~Igvi~~~~~~~f~--~~~~~gi~~~a~~~g-~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~vdgiIi-~~~~~~~ 72 (288)
T 1gud_A 2 AEYAVVLKTLSNPFW--VDMKKGIEDEAKTLG-VSVDIFASPSEG----D-FQSQLQLFEDLSNKNYKGIAF-APLSSVN 72 (288)
T ss_dssp CEEEEEESCSSSHHH--HHHHHHHHHHHHHHT-CCEEEEECSSTT----C-HHHHHHHHHHHHTSSEEEEEE-CCSSSST
T ss_pred cEEEEEeCCCCchHH--HHHHHHHHHHHHHcC-CEEEEeCCCCCC----C-HHHHHHHHHHHHHcCCCEEEE-eCCChHH
Confidence 467888764 3455 667788889999999 776543210111 1 123445677777778999988 543 333
Q ss_pred HHHHHHHHHHcCC
Q 004136 245 TIHLFTEANRMGL 257 (771)
Q Consensus 245 ~~~il~~a~~~g~ 257 (771)
....++++.+.|+
T Consensus 73 ~~~~~~~~~~~~i 85 (288)
T 1gud_A 73 LVMPVARAWKKGI 85 (288)
T ss_dssp THHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 3456777777765
No 370
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=26.16 E-value=55 Score=31.80 Aligned_cols=80 Identities=8% Similarity=-0.027 Sum_probs=45.2
Q ss_pred CCeEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEe-eecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecCh
Q 004136 166 NWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSR-LVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL 242 (771)
Q Consensus 166 ~w~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~-~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~ 242 (771)
+-.+|+++..+ ++|. ....+.+++.+++.| .++... .. ..+. ......++.+.+.+.|.|++ ....
T Consensus 7 ~~~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~~-~~~~------~~~~~~~~~l~~~~vdgiI~-~~~~ 75 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFA--QQILDGIQEEAHKNG-YNLIIVYSG-SADP------EEQKHALLTAIERPVMGILL-LSIA 75 (290)
T ss_dssp -CCEEEEECCCCSSSHH--HHHHHHHHHHHHTTT-CEEEEEC-----------------CHHHHHHSSCCSEEEE-ESCC
T ss_pred cCCEEEEEeCCCCChHH--HHHHHHHHHHHHHcC-CeEEEEeCC-CCCH------HHHHHHHHHHHhcCCCEEEE-eccc
Confidence 44678888864 4465 677888999999999 776543 11 1111 12344566777778999888 5433
Q ss_pred hHHHHHHHHHHHcCC
Q 004136 243 DMTIHLFTEANRMGL 257 (771)
Q Consensus 243 ~~~~~il~~a~~~g~ 257 (771)
.. ...++.+.+.+.
T Consensus 76 ~~-~~~~~~l~~~~i 89 (290)
T 3clk_A 76 LT-DDNLQLLQSSDV 89 (290)
T ss_dssp -----CHHHHHCC--
T ss_pred CC-HHHHHHHHhCCC
Confidence 22 245566666554
No 371
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=25.68 E-value=64 Score=31.45 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=52.0
Q ss_pred eEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChhHH
Q 004136 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (771)
Q Consensus 168 ~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~~~ 245 (771)
.+|+++..+ ++|. ....+.+++++++.| .++.....-.. .+ .......++.+.+.++|.|++........
T Consensus 6 ~~Igvi~~~~~~~~~--~~~~~g~~~~a~~~g-~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 77 (304)
T 3o1i_D 6 EKICAIYPHLKDSYW--LSVNYGMVSEAEKQG-VNLRVLEAGGY----PN-KSRQEQQLALCTQWGANAIILGTVDPHAY 77 (304)
T ss_dssp CEEEEEESCSCSHHH--HHHHHHHHHHHHHHT-CEEEEEECSST----TC-HHHHHHHHHHHHHHTCSEEEECCSSTTSS
T ss_pred cEEEEEeCCCCCcHH--HHHHHHHHHHHHHcC-CeEEEEcCCCC----CC-HHHHHHHHHHHHHcCCCEEEEeCCChhHH
Confidence 578888875 3455 677888999999999 77765332110 01 13456677777778899999823333433
Q ss_pred HHHHHHHHHcCC
Q 004136 246 IHLFTEANRMGL 257 (771)
Q Consensus 246 ~~il~~a~~~g~ 257 (771)
...++++. .|+
T Consensus 78 ~~~~~~~~-~~i 88 (304)
T 3o1i_D 78 EHNLKSWV-GNT 88 (304)
T ss_dssp TTTHHHHT-TTS
T ss_pred HHHHHHHc-CCC
Confidence 45566666 665
No 372
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=25.29 E-value=4.5e+02 Score=25.77 Aligned_cols=130 Identities=17% Similarity=0.236 Sum_probs=74.1
Q ss_pred EEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEE--cCCchHhHHH
Q 004136 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA--GMETWEETAV 112 (771)
Q Consensus 35 I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~avi--Gp~~s~~~~~ 112 (771)
-.|+.+|..++ .+...+|+.|..++ ||..+.+...++.-.-.+.+.-..+.+ +.=+++|+ .+ . ...
T Consensus 46 k~~~~lF~e~S---TRTR~SFe~A~~~L----Gg~~i~l~~~~ss~~kgEsl~DTarvl-s~~~D~iviR~~-~---~~~ 113 (301)
T 2ef0_A 46 KVLALLFEKPS---LRTRTTLEVAMVHL----GGHAVYLDQKQVGIGEREPVRDVAKNL-ERFVEGIAARVF-R---HET 113 (301)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEEEGGGSCTTTCCCHHHHHHHH-TTTCSEEEEECS-S---HHH
T ss_pred CEEEEEeccCC---cchHHHHHHHHHHc----CCeEEEECCcccccCCCCchHHHHHHH-HHhCCEEEEecC-C---hHH
Confidence 56888887653 78899999999998 455666655543322112222222233 22234443 33 2 333
Q ss_pred HHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHH---HHc---CCeEEEEEEEeCCCCCCcchH
Q 004136 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY---NWRRVAAIYEDNVYGGDSGKL 186 (771)
Q Consensus 113 v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l---~~~---~w~~v~ii~~~~~~g~~~~~~ 186 (771)
+..+++..++|+|..+.. ...| .+++++++ +++ ...+++++.+. + ..+
T Consensus 114 ~~~la~~~~vPVINa~~~--------~~HP------------tQaLaDl~Ti~e~~g~l~gl~ia~vGD~---~---rva 167 (301)
T 2ef0_A 114 VEALARHAKVPVVNALSD--------RAHP------------LQALADLLTLKEVFGGLAGLEVAWVGDG---N---NVL 167 (301)
T ss_dssp HHHHHHHCSSCEEEEECS--------SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESCC---C---HHH
T ss_pred HHHHHHHCCCCEEeCCCC--------ccCc------------hHHHHHHHHHHHHhCCcCCcEEEEECCC---c---hhH
Confidence 444556678999985522 2222 35566655 344 34677776542 2 347
Q ss_pred HHHHHHHhccCCeEEEE
Q 004136 187 ALLAEALQNVSSSEIQS 203 (771)
Q Consensus 187 ~~l~~~~~~~g~~~i~~ 203 (771)
..+...+...| .++..
T Consensus 168 ~Sl~~~~~~~g-~~v~~ 183 (301)
T 2ef0_A 168 NSLLEVAPLAG-LKVRV 183 (301)
T ss_dssp HHHHHHHHHHT-CEEEE
T ss_pred HHHHHHHHHcC-CEEEE
Confidence 77777788888 76654
No 373
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=25.26 E-value=2.5e+02 Score=23.76 Aligned_cols=62 Identities=6% Similarity=-0.001 Sum_probs=37.7
Q ss_pred chHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC--CceEEEEEecC--hhHHHHHHHHHHHcCCCC
Q 004136 184 GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQAS--LDMTIHLFTEANRMGLVG 259 (771)
Q Consensus 184 ~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vIv~~~~~--~~~~~~il~~a~~~g~~~ 259 (771)
...+.++..+++.| ..+.... .+..+.+..+.+. .+|+|++ ... ..+...+++++++..-..
T Consensus 47 ~~~~~l~~~L~~~g-~~v~~~~------------~~~~~al~~l~~~~~~~dliil-D~~l~~~~g~~~~~~lr~~~~~~ 112 (157)
T 3hzh_A 47 FTVKQLTQIFTSEG-FNIIDTA------------ADGEEAVIKYKNHYPNIDIVTL-XITMPKMDGITCLSNIMEFDKNA 112 (157)
T ss_dssp HHHHHHHHHHHHTT-CEEEEEE------------SSHHHHHHHHHHHGGGCCEEEE-CSSCSSSCHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCC-CeEEEEE------------CCHHHHHHHHHhcCCCCCEEEE-eccCCCccHHHHHHHHHhhCCCC
Confidence 34677788888888 6664222 1244555555555 6788888 543 345667777777765333
No 374
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=25.12 E-value=5.2e+02 Score=25.77 Aligned_cols=128 Identities=17% Similarity=0.209 Sum_probs=72.0
Q ss_pred EEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCC----CHHHHHHHHHHHHhcCCeEEEEcCCchHhH
Q 004136 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR----DPFQAATAAQELINKEKVKVIAGMETWEET 110 (771)
Q Consensus 35 I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~----~~~~a~~~~~~li~~~~v~aviGp~~s~~~ 110 (771)
-.|+.+|..++ .+...+|+.|+.++ ||..+.+...++.- +....++...... .+.++=++. .
T Consensus 71 K~la~lF~epS---TRTR~SFE~A~~~L----Gg~vi~l~~~~ss~~kgEsl~DTarvLs~y~---D~IviR~~~----~ 136 (340)
T 4ep1_A 71 KILGLIFDKHS---TRTRVSFEAGMVQL----GGHGMFLNGKEMQMGRGETVSDTAKVLSHYI---DGIMIRTFS----H 136 (340)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT----TCEEEEEESCC------CCTTHHHHHHHHHC---SEEEEECSC----H
T ss_pred ceEEEEecCCC---ccHHHHHHHHHHHc----CCeEEEcCcccccCCCCCCHHHHHHHHHHhC---CEEEEecCC----h
Confidence 46888887663 68889999999998 44455554333221 1223333333332 233333332 2
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHH---HHc---CCeEEEEEEEeCCCCCCcc
Q 004136 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY---NWRRVAAIYEDNVYGGDSG 184 (771)
Q Consensus 111 ~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l---~~~---~w~~v~ii~~~~~~g~~~~ 184 (771)
..+..+++..++|+|..+.. ...| .+++++++ +++ ...+|+++.+- + .
T Consensus 137 ~~~~~lA~~~~vPVINag~~--------~~HP------------tQaLaDl~TI~E~~G~l~glkva~vGD~---~---n 190 (340)
T 4ep1_A 137 ADVEELAKESSIPVINGLTD--------DHHP------------CQALADLMTIYEETNTFKGIKLAYVGDG---N---N 190 (340)
T ss_dssp HHHHHHHHHCSSCEEEEECS--------SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESCC---C---H
T ss_pred hHHHHHHHhCCCCEEeCCCC--------CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEECCC---c---h
Confidence 34455566778999976522 1222 34555554 343 45677777532 2 3
Q ss_pred hHHHHHHHHhccCCeEEEE
Q 004136 185 KLALLAEALQNVSSSEIQS 203 (771)
Q Consensus 185 ~~~~l~~~~~~~g~~~i~~ 203 (771)
.+..+...+...| .++..
T Consensus 191 va~Sl~~~~~~~G-~~v~~ 208 (340)
T 4ep1_A 191 VCHSLLLASAKVG-MHMTV 208 (340)
T ss_dssp HHHHHHHHHHHHT-CEEEE
T ss_pred hHHHHHHHHHHcC-CEEEE
Confidence 5677777777778 66554
No 375
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=24.78 E-value=1.1e+02 Score=29.90 Aligned_cols=82 Identities=9% Similarity=0.115 Sum_probs=54.1
Q ss_pred EEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHH-HHHHHhcCCeEEEEcCCchHhHHHH
Q 004136 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATA-AQELINKEKVKVIAGMETWEETAVV 113 (771)
Q Consensus 35 I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~-~~~li~~~~v~aviGp~~s~~~~~v 113 (771)
=+++++..-|- .......+.-++ .+..+ ++...|+-|+...-.+. +.+|..+-.+..|||...|+-+..+
T Consensus 157 ~kv~~vsQTT~--s~~~~~~iv~~L---~~r~p----~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL 227 (297)
T 3dnf_A 157 ERVGIVAQTTQ--NEEFFKEVVGEI---ALWVK----EVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRL 227 (297)
T ss_dssp SEEEEEECTTC--CHHHHHHHHHHH---HHHSS----EEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHH
T ss_pred CcEEEEEecCC--cHHHHHHHHHHH---HHhCC----CCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHH
Confidence 47887776651 122222222233 22323 34578998888877665 4556555677889999999999999
Q ss_pred HHhhccCCccEE
Q 004136 114 AEIASRVQVPIL 125 (771)
Q Consensus 114 ~~~~~~~~iP~I 125 (771)
..+|...+.|-.
T Consensus 228 ~eia~~~~~~ty 239 (297)
T 3dnf_A 228 YYISKELNPNTY 239 (297)
T ss_dssp HHHHHHHCSSEE
T ss_pred HHHHHhcCCCEE
Confidence 999999888743
No 376
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=24.76 E-value=88 Score=31.43 Aligned_cols=80 Identities=10% Similarity=0.116 Sum_probs=49.6
Q ss_pred CCeEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChh
Q 004136 166 NWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (771)
Q Consensus 166 ~w~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~ 243 (771)
.-.+|+++..+ ++|. ....+.+.+.+++.| ..+..... . . + .......++.+.+.+.|.|++ .....
T Consensus 65 ~s~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~-~----~-~~~~~~~~~~l~~~~vdgiI~-~~~~~ 133 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYF--AAMVTEIQSTASKAG-LATIITNS-N-E----D-ATTMSGSLEFLTSHGVDGIIC-VPNEE 133 (348)
T ss_dssp ---CEEEEESCSSSHHH--HHHHHHHHHHHHHTT-CCEEEEEC-T-T----C-HHHHHHHHHHHHHTTCSCEEE-CCCGG
T ss_pred CCCEEEEEeCCCCCcHH--HHHHHHHHHHHHHcC-CEEEEEeC-C-C----C-HHHHHHHHHHHHhCCCCEEEE-eCCCC
Confidence 34578888865 3455 667888999999999 77654321 1 1 1 133456677777788999888 55433
Q ss_pred HHHHHHHHHHHcCC
Q 004136 244 MTIHLFTEANRMGL 257 (771)
Q Consensus 244 ~~~~il~~a~~~g~ 257 (771)
. ...++.+.+.|+
T Consensus 134 ~-~~~~~~l~~~~i 146 (348)
T 3bil_A 134 C-ANQLEDLQKQGM 146 (348)
T ss_dssp G-HHHHHHHHHC-C
T ss_pred C-hHHHHHHHhCCC
Confidence 2 245667776665
No 377
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=24.74 E-value=86 Score=31.15 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=49.8
Q ss_pred CCeEEEEEEEe--CCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecChh
Q 004136 166 NWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (771)
Q Consensus 166 ~w~~v~ii~~~--~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~~ 243 (771)
.-.+|+++..+ ++|. ....+.+.+.+++.| ..+.... ... + .......++.+.+.+.|.|++ .....
T Consensus 59 ~~~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~---~~~---~-~~~~~~~~~~l~~~~vdgiI~-~~~~~ 127 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFY--AELARGIEDIATMYK-YNIILSN---SDQ---N-QDKELHLLNNMLGKQVDGIIF-MSGNV 127 (332)
T ss_dssp -CCEEEEEEC--CCSHH--HHHHHHHHHHHHHHT-CEEEEEE---CCS---H-HHHHHHHHHHTSCCSSCCEEE-CCSSC
T ss_pred CCCEEEEEeCCCCCcHH--HHHHHHHHHHHHHcC-CEEEEEe---CCC---C-hHHHHHHHHHHHhCCCcEEEE-ecCCC
Confidence 44678988864 4565 677888999999999 7765432 111 1 123455677777778999888 54322
Q ss_pred HHHHHHHHHHHcCC
Q 004136 244 MTIHLFTEANRMGL 257 (771)
Q Consensus 244 ~~~~il~~a~~~g~ 257 (771)
.. ..++.+.+.+.
T Consensus 128 ~~-~~~~~l~~~~i 140 (332)
T 2hsg_A 128 TE-EHVEELKKSPV 140 (332)
T ss_dssp CH-HHHHHHTTSSS
T ss_pred CH-HHHHHHHhCCC
Confidence 21 45566655554
No 378
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=24.55 E-value=4e+02 Score=25.60 Aligned_cols=79 Identities=9% Similarity=-0.009 Sum_probs=53.2
Q ss_pred CceEEE--ecChHHHHHHHHhcCCCCCC--cccCCCCHHHHHHHHHcCCceEEEecc---------hhHHHHHHhcCCce
Q 004136 683 NLKVGC--VDDSFVKKYLEEVLGFRSGN--IVPFGNTEANYIQKFENNTIDSLFLER---------PYEKVFLDKYCKKY 749 (771)
Q Consensus 683 ~~~~g~--~~~s~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~a~i~~~---------~~~~~~~~~~c~~l 749 (771)
.++|++ .+|++.+.-.... +.... +..+.+ +++.+++|.+|++|.-+..- .+++.+.+ .+ +
T Consensus 3 ~~~iaylGp~Gtfs~~Aa~~~--f~~~~~~~~~~~s-~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~~-l 76 (267)
T 2qmw_A 3 AMQLYYLGPKGTFSYLACRQY--FSENEATFQPKSN-LFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQ--QD-V 76 (267)
T ss_dssp -CEEEEECSTTSHHHHHHHHH--CCTTSSEEEEESS-HHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHT--TS-S
T ss_pred ccEEEEECCCCcHHHHHHHHh--hccCCceEEEcCC-HHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhc--CC-c
Confidence 356777 7788888877664 33333 678888 99999999999988766632 12222333 24 8
Q ss_pred eEee-eeeeceEEEEEecC
Q 004136 750 TAIN-TYRFGGLGFVSNII 767 (771)
Q Consensus 750 ~~~~-~~~~~~~g~~~~k~ 767 (771)
.+++ .+-.-...+...+|
T Consensus 77 ~I~gE~~l~I~h~Ll~~~g 95 (267)
T 2qmw_A 77 FAHGEIRLDINFALYGNGT 95 (267)
T ss_dssp EEEEEEEEECCEEEECCSS
T ss_pred EEEEEEEEEeeeEEEecCC
Confidence 8888 66666677766655
No 379
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=24.16 E-value=2.8e+02 Score=27.62 Aligned_cols=94 Identities=11% Similarity=0.050 Sum_probs=48.8
Q ss_pred EEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHH
Q 004136 144 LIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGE 223 (771)
Q Consensus 144 ~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~ 223 (771)
++.+.++.......|.. -+++.+|+.-.... ....+.+.+.+++.| +++....+-. . .+....
T Consensus 12 ~~~~~~~~~~~~~~m~~------~~~~~vi~Np~sg~--~~~~~~i~~~l~~~g-~~~~~~~t~~--~------~~~~~~ 74 (332)
T 2bon_A 12 LYKKAGSETLYIQGMAE------FPASLLILNGKSTD--NLPLREAIMLLREEG-MTIHVRVTWE--K------GDAARY 74 (332)
T ss_dssp ------------------------CCEEEEECSSSTT--CHHHHHHHHHHHTTT-CCEEEEECCS--T------THHHHH
T ss_pred eeeeccCcchhhhhhhh------cceEEEEECCCCCC--CchHHHHHHHHHHcC-CcEEEEEecC--c------chHHHH
Confidence 34444444444444432 25788888654432 334567888888889 7665543321 1 123444
Q ss_pred HHHhhhCCceEEEEEecChhHHHHHHHHHHHc
Q 004136 224 LKKVQDKQSRVFIVLQASLDMTIHLFTEANRM 255 (771)
Q Consensus 224 l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~~ 255 (771)
.++....+.|.|++ .+.......++..+.+.
T Consensus 75 ~~~~~~~~~d~vvv-~GGDGTl~~v~~~l~~~ 105 (332)
T 2bon_A 75 VEEARKFGVATVIA-GGGDGTINEVSTALIQC 105 (332)
T ss_dssp HHHHHHHTCSEEEE-EESHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCEEEE-EccchHHHHHHHHHhhc
Confidence 44454457888888 78777888888887754
No 380
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=24.06 E-value=3.7e+02 Score=26.11 Aligned_cols=76 Identities=7% Similarity=-0.032 Sum_probs=53.5
Q ss_pred CceEEE--ecChHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecc---------hhHHHHHHhcCCceeE
Q 004136 683 NLKVGC--VDDSFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLER---------PYEKVFLDKYCKKYTA 751 (771)
Q Consensus 683 ~~~~g~--~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~---------~~~~~~~~~~c~~l~~ 751 (771)
.++|++ .+|++.+.-..+. + ....+.+ +++.+++|.+|++|.-+..- .+++.+.+ .+ +.+
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~--f---~~~p~~s-~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~~-l~I 76 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRF--G---EPLPCES-FDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLR--RP-VVI 76 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHH--S---EEEEESC-HHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHH--SS-EEE
T ss_pred CcEEEEECCCCCHHHHHHHHH--h---HhCcCCC-HHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhc--CC-cEE
Confidence 457887 7788888877663 3 5677888 99999999999987766542 12333333 34 889
Q ss_pred ee-eeeeceEEEEEecC
Q 004136 752 IN-TYRFGGLGFVSNII 767 (771)
Q Consensus 752 ~~-~~~~~~~g~~~~k~ 767 (771)
++ .+-.-...+...++
T Consensus 77 ~gE~~l~I~h~Ll~~~g 93 (283)
T 2qmx_A 77 LAETFVKVEHCLLGLPG 93 (283)
T ss_dssp EEEEEEECCCEEEECSS
T ss_pred EEEEEEeeeeeEecCCC
Confidence 88 66666677766665
No 381
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=23.61 E-value=1e+02 Score=29.45 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=32.6
Q ss_pred CCcEEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhcCCeEEEEcC
Q 004136 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGM 104 (771)
Q Consensus 32 ~~~I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviGp 104 (771)
.+.|+||+.... . .-+.-.++++.+..|+.++++...+ ..... ..+. +.++++.|+.
T Consensus 27 ~g~l~Ig~~~~~-------~-~~l~~~l~~f~~~~P~i~v~i~~~~----~~~~~---~~l~-~g~~Di~i~~ 83 (290)
T 1twy_A 27 ASEITISGSTSV-------A-RIMDVLAEKYNQQHPETYVAVQGVG----STAGI---SLLK-KGVADIAMTS 83 (290)
T ss_dssp -CEEEEEECHHH-------H-HHHHHHHHHHHHHCTTCEEEEEESC----HHHHH---HHHH-TTSCSEEEES
T ss_pred CCCEEEecCcch-------H-HHHHHHHHHHHhhCCCceEEEEecC----cHHHH---HHHh-cCCCcEEEec
Confidence 478999975322 1 2355566777777678888876432 22222 2343 5667766653
No 382
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=23.46 E-value=1.3e+02 Score=28.64 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=55.1
Q ss_pred cCcHHHHHHHHHHHH-----HcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHH
Q 004136 149 SNDSEQMKCIADLAR-----KYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGE 223 (771)
Q Consensus 149 p~~~~~~~a~~~~l~-----~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~ 223 (771)
++....+..+++.+. ....+++.++..+. + .+.+.+.|++.| .++.....|.......+ ...+.
T Consensus 110 ~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~--~-----r~~L~~~L~~~G-~~v~~~~vY~~~~~~~~-~~~~~-- 178 (254)
T 4es6_A 110 PEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEG--G-----REFLAERLRGQG-VQVDYLPLYRRRAPDYP-AGELL-- 178 (254)
T ss_dssp CSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSS--C-----CCHHHHHHHHTT-CEEEEEECEEEECCCCC-TTHHH--
T ss_pred CCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCc--c-----HHHHHHHHHHCC-CEEEEEeEEEeeCCCCC-HHHHH--
Confidence 333445677777775 34567887766443 3 345677888889 88776555443221111 02233
Q ss_pred HHHhhhCCceEEEEEecChhHHHHHHHHHHH
Q 004136 224 LKKVQDKQSRVFIVLQASLDMTIHLFTEANR 254 (771)
Q Consensus 224 l~~l~~~~~~vIv~~~~~~~~~~~il~~a~~ 254 (771)
..+.....|+|++ .++..+..+++.+.+
T Consensus 179 -~~l~~~~~d~v~f--tS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 179 -ARVRAERLNGLVV--SSGQGLQNLYQLAAA 206 (254)
T ss_dssp -HHHHHTTCCEEEC--CSHHHHHHHHHHHGG
T ss_pred -HHHHhCCCCEEEE--cCHHHHHHHHHHhhH
Confidence 3344556777655 888888888887754
No 383
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=23.44 E-value=1.7e+02 Score=27.40 Aligned_cols=76 Identities=8% Similarity=-0.115 Sum_probs=47.4
Q ss_pred cCCeEEEEEEEeCCCCCCc--chHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh-CC-ceEEEEEec
Q 004136 165 YNWRRVAAIYEDNVYGGDS--GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQ-SRVFIVLQA 240 (771)
Q Consensus 165 ~~w~~v~ii~~~~~~g~~~--~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~-~~vIv~~~~ 240 (771)
+...+|+++-..+.-| . ...+.+.+.|++.| .+|...-........+.+.+++...+.+... .. .+.|++ ++
T Consensus 17 ~~~mkiali~~~sqa~--kN~~lKe~i~~~L~~~G-~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~GIli-CG 92 (231)
T 3c5y_A 17 FQGMKIALIIENSQAA--KNAVVHEALTTVAEPLG-HKVFNYGMYTAEDKASLTYVMNGLLAGILLNSGAADFVVTG-CG 92 (231)
T ss_dssp --CCEEEECCCGGGGG--GHHHHHHHHHHHHGGGT-CEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEEEEE-ES
T ss_pred hhcceEEEEecCCHhh--hHHHHHHHHHHHHHHCC-CEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEE-cC
Confidence 4557899998887766 5 56689999999999 8888765443211112234566665555433 33 356666 77
Q ss_pred ChhH
Q 004136 241 SLDM 244 (771)
Q Consensus 241 ~~~~ 244 (771)
++.-
T Consensus 93 TGiG 96 (231)
T 3c5y_A 93 TGMG 96 (231)
T ss_dssp SSHH
T ss_pred CcHH
Confidence 6654
No 384
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=23.43 E-value=32 Score=31.91 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=26.9
Q ss_pred eEEEEcCCchHhHHHHHHhhccCCccEEeec
Q 004136 98 VKVIAGMETWEETAVVAEIASRVQVPILSFA 128 (771)
Q Consensus 98 v~aviGp~~s~~~~~v~~~~~~~~iP~Is~~ 128 (771)
+.+++||..|.-.-....+++.+++|+||++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 3578999999888888889999999999876
No 385
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=23.33 E-value=2.4e+02 Score=27.21 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCeEEEEcCCchHhHHHHHHhhccC-CccEEe
Q 004136 86 ATAAQELINKEKVKVIAGMETWEETAVVAEIASRV-QVPILS 126 (771)
Q Consensus 86 ~~~~~~li~~~~v~aviGp~~s~~~~~v~~~~~~~-~iP~Is 126 (771)
.+.+..|. +.++.+|+-+-.+.++.++..+-+.. ++|+|.
T Consensus 59 ~~~~~~L~-~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 59 AQTAKFLI-DQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHHHHH-HTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHH-HCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 33444555 78999888764444444555666666 899997
No 386
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=23.33 E-value=4.4e+02 Score=24.23 Aligned_cols=90 Identities=9% Similarity=-0.063 Sum_probs=58.2
Q ss_pred eEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEE--EecCh---
Q 004136 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV--LQASL--- 242 (771)
Q Consensus 168 ~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~--~~~~~--- 242 (771)
.++.+-...++.- .-...-+...++..| +++.+--. +. .....+..+++.++++|.+ -....
T Consensus 93 ~~vll~~v~gd~H--diG~~iv~~~l~~~G-~~Vi~LG~---~v-------p~e~iv~~~~~~~~d~v~l~~S~l~~~~~ 159 (215)
T 3ezx_A 93 GLAITFVAEGDIH--DIGHRLVTTMLGANG-FQIVDLGV---DV-------LNENVVEEAAKHKGEKVLLVGSALMTTSM 159 (215)
T ss_dssp CEEEEEECTTCCC--CHHHHHHHHHHHHTS-CEEEECCS---SC-------CHHHHHHHHHHTTTSCEEEEEECSSHHHH
T ss_pred CeEEEEeCCCChh--HHHHHHHHHHHHHCC-CeEEEcCC---CC-------CHHHHHHHHHHcCCCEEEEEchhcccCcH
Confidence 3555555555543 566888999999999 88865321 11 2566677788889998887 33333
Q ss_pred hHHHHHHHHHHHcCCCCCCeEEEeeCcc
Q 004136 243 DMTIHLFTEANRMGLVGKDSVWIVTNTV 270 (771)
Q Consensus 243 ~~~~~il~~a~~~g~~~~~~~~i~~~~~ 270 (771)
.....+++++++.|....--+|+++...
T Consensus 160 ~~~~~~i~~l~~~~~~~~v~v~vGG~~~ 187 (215)
T 3ezx_A 160 LGQKDLMDRLNEEKLRDSVKCMFGGAPV 187 (215)
T ss_dssp THHHHHHHHHHHTTCGGGSEEEEESSSC
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 3467788899998873222256665443
No 387
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=23.28 E-value=2.3e+02 Score=23.76 Aligned_cols=60 Identities=3% Similarity=-0.021 Sum_probs=39.6
Q ss_pred chHHHHHHHHhc-cCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecCh--hHHHHHHHHHHHcCC
Q 004136 184 GKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL--DMTIHLFTEANRMGL 257 (771)
Q Consensus 184 ~~~~~l~~~~~~-~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~--~~~~~il~~a~~~g~ 257 (771)
...+.++..+++ .| ..+.... .+..+.+..+.+..+++|++ .... .+...+++++++..-
T Consensus 16 ~~~~~l~~~L~~~~~-~~v~~~~------------~~~~~a~~~l~~~~~dlii~-D~~l~~~~g~~~~~~l~~~~~ 78 (153)
T 3cz5_A 16 IVREGYRRLIERRPG-YAVVAEA------------ADAGEAYRLYRETTPDIVVM-DLTLPGPGGIEATRHIRQWDG 78 (153)
T ss_dssp HHHHHHHHHHTTSTT-EEEEEEE------------SSHHHHHHHHHTTCCSEEEE-CSCCSSSCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhhCCC-cEEEEEe------------CCHHHHHHHHhcCCCCEEEE-ecCCCCCCHHHHHHHHHHhCC
Confidence 347788888887 67 6654322 12455666677778999998 6433 356677888877643
No 388
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=23.17 E-value=57 Score=32.63 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceeee-ecccceeeccEEEEEecCC
Q 004136 490 FSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYV-EFTQPYAESGFSMIVPAKQ 565 (771)
Q Consensus 490 ~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~~-~fs~p~~~~~~~~~v~~~~ 565 (771)
+.-++++.+.+.-+.++++. . +.-..++.++.+|++|+++....++.+..+.. --..|+....++++++.+.
T Consensus 15 ~l~~~~~~f~~~p~v~i~v~--~--~gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l~~~~~~~d~lvvvv~~~~ 87 (321)
T 1ixh_A 15 VYAKWADTYQKETGNKVNYQ--G--IGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPG 87 (321)
T ss_dssp HHHHHHHHHHHHHCCEEEEE--E--CCHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEEEEEEEEEEEEEEECCTT
T ss_pred HHHHHHHHHHhcCCceEEEe--c--CCCHHHHHHHHcCCCcEEecccCCChhhHhhCCCEEeeeeeeeEEEEEeCCC
Confidence 44455666655335554333 2 24577999999999999998877766542100 0236899999999998764
No 389
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=23.10 E-value=3.4e+02 Score=23.43 Aligned_cols=64 Identities=6% Similarity=-0.116 Sum_probs=40.6
Q ss_pred EEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC-C-ceEEEEEecChhH
Q 004136 173 IYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-Q-SRVFIVLQASLDM 244 (771)
Q Consensus 173 i~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~-~~vIv~~~~~~~~ 244 (771)
|..| .-| ..+.+.+.+.|++.| .+|...-.+... +.+.+++...+.+...+ . -+.|++ ++++.-
T Consensus 6 igsD-haG--~~lK~~i~~~L~~~G-~eV~D~G~~~~~---~~dYpd~a~~va~~V~~g~~d~GIli-CGTGiG 71 (149)
T 2vvr_A 6 FGCD-HVG--FILKHEIVAHLVERG-VEVIDKGTWSSE---RTDYPHYASQVALAVAGGEVDGGILI-CGTGVG 71 (149)
T ss_dssp EEEC-TTG--GGGHHHHHHHHHHTT-CEEEECCCCSSS---CCCHHHHHHHHHHHHHTTSSSEEEEE-ESSSHH
T ss_pred EEeC-chh--HHHHHHHHHHHHHCC-CEEEEeCCCCCC---CCChHHHHHHHHHHHHcCCCceEEEE-eCCcHH
Confidence 3444 456 888999999999999 888776543322 22346666666554433 3 356666 766654
No 390
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=22.77 E-value=75 Score=30.27 Aligned_cols=75 Identities=12% Similarity=-0.009 Sum_probs=51.4
Q ss_pred ccchHHHHHHHHHHCCCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccce---eeeecccceeeccEEEEEecC
Q 004136 488 DGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRT---EYVEFTQPYAESGFSMIVPAK 564 (771)
Q Consensus 488 ~G~~~~l~~~~a~~l~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~---~~~~fs~p~~~~~~~~~v~~~ 564 (771)
.|+--+|...+.+..|.++.+.... -..++.++.+|.+|+.++.-....+.. ....-..+|+...+++++|+.
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~~g----Sg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVLV~P~~ 93 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVAVG----TGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVIIGNPS 93 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEEEC----HHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEEEECTH
T ss_pred chHHHHHHHHHHHHhCCeEEEEEcC----cHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEEEEeCC
Confidence 4777888999998889886655433 457899999999999876443222211 001123678888999999886
Q ss_pred CC
Q 004136 565 QE 566 (771)
Q Consensus 565 ~~ 566 (771)
++
T Consensus 94 ~P 95 (242)
T 3kn3_A 94 FK 95 (242)
T ss_dssp HH
T ss_pred Cc
Confidence 53
No 391
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=22.73 E-value=56 Score=31.67 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=37.7
Q ss_pred hHHHHHHHhcccccEEEeeEeeeccce-eeeecccceeeccEEEEEecCCC
Q 004136 517 YDDLINGVYDKTYDAAVGDLTILGNRT-EYVEFTQPYAESGFSMIVPAKQE 566 (771)
Q Consensus 517 ~~~~i~~l~~~~~D~~~~~~~~t~~r~-~~~~fs~p~~~~~~~~~v~~~~~ 566 (771)
-.+.+.++.+|++||+.++..++.+.. +.++ .|+...+++++|.++.+
T Consensus 193 Sg~G~~~~~~g~~di~~ssr~l~~~e~~~~~~--~~va~d~iavvvn~~n~ 241 (265)
T 4h1x_A 193 SSAGITAVKEKTADIGMVSRELTPEEGKSLTH--DAIALDGIAVVVNNDNK 241 (265)
T ss_dssp HHHHHHHHHHTSCSEEEESSCCCHHHHTTCEE--EEEEEEEEEEEECTTCC
T ss_pred cHHHHHHHHcCCCceeeccccCChHHHcCCeE--eeEEEEeEEEEECCCCC
Confidence 556789999999999999888877543 3333 58888999999987654
No 392
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=22.69 E-value=2.2e+02 Score=21.26 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=29.3
Q ss_pred HHHHHHHHHhh-hCCceEEEEEecChhHHHHHHHHHHHcCCCC
Q 004136 218 EAVRGELKKVQ-DKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (771)
Q Consensus 218 ~~~~~~l~~l~-~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~ 259 (771)
.++...+.++. ..+..+|+. |.++..+......++++|+..
T Consensus 27 ~~l~~~~~~l~~~~~~~ivv~-C~~g~rs~~aa~~L~~~G~~~ 68 (85)
T 2jtq_A 27 KEVKERIATAVPDKNDTVKVY-CNAGRQSGQAKEILSEMGYTH 68 (85)
T ss_dssp HHHHHHHHHHCCCTTSEEEEE-ESSSHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhCCCCCCcEEEE-cCCCchHHHHHHHHHHcCCCC
Confidence 35666677662 335566666 777778888888899999865
No 393
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=22.48 E-value=2.7e+02 Score=26.22 Aligned_cols=96 Identities=1% Similarity=-0.043 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceE
Q 004136 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234 (771)
Q Consensus 155 ~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~v 234 (771)
....++.++..|.+.|=+....-.++......+.+++.+++.| +++........ .....+...++..+.-+++.
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~g-l~i~~~~~~~~-----~~~~~~~~~i~~A~~lGa~~ 105 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHK-VTGYAVGPIYM-----KSEEEIDRAFDYAKRVGVKL 105 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTT-CEEEEEEEEEE-----CSHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcC-CeEEEEecccc-----CCHHHHHHHHHHHHHhCCCE
Confidence 4567777888898888766432111100344688999999999 88765432211 11256777888777789998
Q ss_pred EEEEecChhHHHHHHHHHHHcCC
Q 004136 235 FIVLQASLDMTIHLFTEANRMGL 257 (771)
Q Consensus 235 Iv~~~~~~~~~~~il~~a~~~g~ 257 (771)
|++ ....+....+.+.|++.|+
T Consensus 106 v~~-~p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 106 IVG-VPNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp EEE-EECGGGHHHHHHHHHHHTC
T ss_pred EEe-cCCHHHHHHHHHHHHHcCC
Confidence 888 6666777778888887775
No 394
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 4fim_A* 4fjp_A* 4for_A* 4g2z_A* 4grk_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* ...
Probab=22.31 E-value=1.8e+02 Score=29.21 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=26.0
Q ss_pred CHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeE
Q 004136 715 TEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTA 751 (771)
Q Consensus 715 ~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~ 751 (771)
+.+++|+++++|+.|++..|...+. ....|+ |+.
T Consensus 35 s~~dCi~~I~~g~AD~~~ld~g~vy--~Ag~~~-L~P 68 (335)
T 3tod_A 35 TTDDCIVLVLKGEADALNLDGGYIY--TAGKCG-LVP 68 (335)
T ss_dssp SHHHHHHHHHHTSCCEEEECHHHHH--HHHHTT-CEE
T ss_pred CHHHHHHHHHcCCCCEEEECchheE--EeccCC-cee
Confidence 3899999999999999999877543 233476 443
No 395
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=22.25 E-value=2.2e+02 Score=25.70 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=46.0
Q ss_pred HHcCCeEEEEEEEeCC--CC-CCcchHHHHHHHHhc---cCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh-CCceEE
Q 004136 163 RKYNWRRVAAIYEDNV--YG-GDSGKLALLAEALQN---VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVF 235 (771)
Q Consensus 163 ~~~~w~~v~ii~~~~~--~g-~~~~~~~~l~~~~~~---~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~~~vI 235 (771)
..+.--+++||...|+ .| ..+.....+.+.+++ .| .++.....++.+. ..+.+.+++..+ .++|+|
T Consensus 10 ~v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G-~~v~~~~iv~Dd~------~~I~~al~~a~~~~~~DlV 82 (189)
T 1jlj_A 10 NHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLG-GTISAYKIVPDEI------EEIKETLIDWCDEKELNLI 82 (189)
T ss_dssp ---CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTC-CEEEEEEEECSCH------HHHHHHHHHHHHTSCCSEE
T ss_pred cccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCC-cEEEEEEEeCCCH------HHHHHHHHHHhhcCCCCEE
Confidence 3445567888887654 11 003345678888888 78 8888777666554 668888887765 379999
Q ss_pred EEEec
Q 004136 236 IVLQA 240 (771)
Q Consensus 236 v~~~~ 240 (771)
+. .+
T Consensus 83 It-tG 86 (189)
T 1jlj_A 83 LT-TG 86 (189)
T ss_dssp EE-ES
T ss_pred EE-cC
Confidence 98 54
No 396
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.11 E-value=2.7e+02 Score=21.37 Aligned_cols=99 Identities=15% Similarity=0.225 Sum_probs=55.6
Q ss_pred ceEEEeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHH
Q 004136 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (771)
Q Consensus 142 p~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~ 221 (771)
.+-.|+..+...+-..+-++++.|+.+-+.++.+|..|. +.--...++.| ..+.. ..+..+. +.+.
T Consensus 26 gfkvrtvrspqelkdsieelvkkynativvvvvddkewa------ekairfvkslg-aqvli-iiydqdq------nrle 91 (134)
T 2l69_A 26 GFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWA------EKAIRFVKSLG-AQVLI-IIYDQDQ------NRLE 91 (134)
T ss_dssp TCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHH------HHHHHHHHHHC-CCCEE-EEECSCH------HHHH
T ss_pred CceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHH------HHHHHHHHhcC-CeEEE-EEEeCch------hHHH
Confidence 456788888888888888888888877777776665553 22222334444 33322 2233332 3344
Q ss_pred HHHHHhhhCCceEEEEEecChhHHHHHHHH-HHHcC
Q 004136 222 GELKKVQDKQSRVFIVLQASLDMTIHLFTE-ANRMG 256 (771)
Q Consensus 222 ~~l~~l~~~~~~vIv~~~~~~~~~~~il~~-a~~~g 256 (771)
..-++++..+-++--+ .++++...-+.. .++.|
T Consensus 92 efsrevrrrgfevrtv--tspddfkkslerlirevg 125 (134)
T 2l69_A 92 EFSREVRRRGFEVRTV--TSPDDFKKSLERLIREVG 125 (134)
T ss_dssp HHHHHHHHTTCCEEEE--SSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCceEEEe--cChHHHHHHHHHHHHHhc
Confidence 4445556666665544 666665554443 33344
No 397
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=22.05 E-value=95 Score=32.84 Aligned_cols=148 Identities=11% Similarity=0.001 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHhcCCeEEEE--cCCch-------HhHHHHHHhhccCCccEEeecCCCCCCCccCCCCceEEEeecCc
Q 004136 81 DPFQAATAAQELINKEKVKVIA--GMETW-------EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASND 151 (771)
Q Consensus 81 ~~~~a~~~~~~li~~~~v~avi--Gp~~s-------~~~~~v~~~~~~~~iP~Is~~a~~~~~~l~~~~~p~~fr~~p~~ 151 (771)
.+..+...+.+++ +.++.+++ -..-+ .....+...++..++.+|.+.+. .+-......-....|..
T Consensus 73 p~~~~~~~v~e~~-~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~----Gv~~~~~~~~~~~~~~~ 147 (457)
T 2csu_A 73 PKRFVKDTLIQCG-EKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCV----GIMNTHVDLNATFITVA 147 (457)
T ss_dssp CHHHHHHHHHHHH-HHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCC----EEEEGGGTEEEESSCCC
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcc----eEEccCCCceeeecCCC
Confidence 4667777777877 55665433 21211 12566778889999999988765 33221111112222331
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh-C
Q 004136 152 SEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-K 230 (771)
Q Consensus 152 ~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~ 230 (771)
.. -+|++|.+.... ...+...+.+.| +-+......-... | .++.+.|+.+.+ .
T Consensus 148 ------------~~--G~v~~vsqSG~~------~~~~~~~~~~~g-~G~s~~vs~G~~~---~--~~~~d~l~~~~~D~ 201 (457)
T 2csu_A 148 ------------KK--GNVAFISQSGAL------GAGIVYKTIKED-IGFSKFISVGNMA---D--VDFAELMEYLADTE 201 (457)
T ss_dssp ------------EE--CSEEEEESCHHH------HHHHHHHHHHTT-CEESEEEECTTCC---S--SCHHHHHHHHTTCS
T ss_pred ------------CC--CCEEEEeCCHHH------HHHHHHHHHhcC-CCeeEEEECCCcC---C--CCHHHHHHHHhcCC
Confidence 11 479999877554 345556677777 5565555554433 2 458888888765 4
Q ss_pred CceEEEEEecCh-hHHHHHHHHHHHcCCCCC
Q 004136 231 QSRVFIVLQASL-DMTIHLFTEANRMGLVGK 260 (771)
Q Consensus 231 ~~~vIv~~~~~~-~~~~~il~~a~~~g~~~~ 260 (771)
+.++|++ +... .+.+.+++.+++.....+
T Consensus 202 ~t~~I~l-~~E~i~~~~~f~~~a~~~~~~KP 231 (457)
T 2csu_A 202 EDKAIAL-YIEGVRNGKKFMEVAKRVTKKKP 231 (457)
T ss_dssp SCCEEEE-EESCCSCHHHHHHHHHHHHHHSC
T ss_pred CCCEEEE-EEecCCCHHHHHHHHHHhcCCCC
Confidence 8899999 7776 668888888887643333
No 398
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=21.97 E-value=2.7e+02 Score=22.33 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=39.2
Q ss_pred hHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEecCh--hHHHHHHHHHHHcCCCC
Q 004136 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL--DMTIHLFTEANRMGLVG 259 (771)
Q Consensus 185 ~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~~~--~~~~~il~~a~~~g~~~ 259 (771)
..+.+++.+++.| ..+... .+..+.+..+.+..+|+|++ .... .....+++++++.+-..
T Consensus 19 ~~~~l~~~L~~~g-~~v~~~-------------~~~~~a~~~l~~~~~dlvi~-d~~l~~~~g~~~~~~l~~~~~~~ 80 (130)
T 3eod_A 19 FRSLLDSWFSSLG-ATTVLA-------------ADGVDALELLGGFTPDLMIC-DIAMPRMNGLKLLEHIRNRGDQT 80 (130)
T ss_dssp HHHHHHHHHHHTT-CEEEEE-------------SCHHHHHHHHTTCCCSEEEE-CCC-----CHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCC-ceEEEe-------------CCHHHHHHHHhcCCCCEEEE-ecCCCCCCHHHHHHHHHhcCCCC
Confidence 3677888888888 665431 12456667777778999998 6543 34567788888765433
No 399
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=21.78 E-value=1.2e+02 Score=29.49 Aligned_cols=59 Identities=15% Similarity=-0.076 Sum_probs=40.9
Q ss_pred cccCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee-eeeeceEEEEEecCCC
Q 004136 709 IVPFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN-TYRFGGLGFVSNIIYS 769 (771)
Q Consensus 709 ~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~-~~~~~~~g~~~~k~s~ 769 (771)
++.+.. ..+.+++|..|++|+.+.....+-....+.-+ +..+. .+...+.+++.+|+|+
T Consensus 38 ~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~l~~~~~s~ 97 (302)
T 3ix1_A 38 IVFPTN-PTDPIQLTASGAIPLALSYQPDVILARSKDLP-VVSVASVVRSPLNHVMFLAEQD 97 (302)
T ss_dssp EECCSS-TTHHHHHHHHTSCSEEEECHHHHHHHHHTTCC-EEEEEEEECSCCEEEEEEGGGC
T ss_pred EecCCC-CchHHHHHHCCCCCEEecCHHHHHHHHHCCCC-EEEEEEEeccCCEEEEEECCCC
Confidence 334444 55889999999999998874443333344344 77777 6666789999998875
No 400
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=21.77 E-value=62 Score=32.86 Aligned_cols=71 Identities=8% Similarity=-0.135 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHC-CCcccEEEecCCCChHHHHHHHhcccccEEEeeEeeeccceee---eecccceeeccEEEEEecCC
Q 004136 490 FSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEY---VEFTQPYAESGFSMIVPAKQ 565 (771)
Q Consensus 490 ~~~~l~~~~a~~l-~f~~~~~~~~~~~~~~~~i~~l~~~~~D~~~~~~~~t~~r~~~---~~fs~p~~~~~~~~~v~~~~ 565 (771)
+.-++++.+.++. +.+ +.+.. +.-...+.++.+|++||++.+..++.+..+. + ...|+....++++++.+.
T Consensus 40 ~l~~~~~~f~~~~p~v~--i~v~~--~gS~~g~~~l~~g~~Di~~~~~~~~~~e~~~~~~l-~~~pi~~d~lvvvvn~~~ 114 (350)
T 1pc3_A 40 LFNLWGPAFHERYPNVT--ITAQG--TGSGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGL-MNIALAISAQQVNYNLPG 114 (350)
T ss_dssp HHHHHHHHHHHHSTTEE--EECCB--CCHHHHHHHHHTTSCSEEEESSCCCHHHHHHSTTE-EEEEEEEEEEEEEECCTT
T ss_pred HHHHHHHHHHHHCCCce--EEEec--CCCHHHHHHHHcCCCcEEeccCCCCHHHHHhcCCC-EEeeEEeeeEEEEEeCCc
Confidence 4445566665554 444 33222 3467899999999999999888777654211 1 246899999999998765
No 401
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=21.76 E-value=1.5e+02 Score=26.13 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=42.9
Q ss_pred CeEEEEEEEeCC--CC-CCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEEEEEec
Q 004136 167 WRRVAAIYEDNV--YG-GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQA 240 (771)
Q Consensus 167 w~~v~ii~~~~~--~g-~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vIv~~~~ 240 (771)
--++++|...|+ .| ..+.....+.+.+++.| .++.....++ |+ ..+.+.+++..+.++|+|+. .+
T Consensus 7 ~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G-~~v~~~~iv~------Dd-~~i~~al~~a~~~~~DlVit-tG 74 (164)
T 3pzy_A 7 TRSARVIIASTRASSGEYEDRCGPIITEWLAQQG-FSSAQPEVVA------DG-SPVGEALRKAIDDDVDVILT-SG 74 (164)
T ss_dssp CCEEEEEEECHHHHC----CCHHHHHHHHHHHTT-CEECCCEEEC------SS-HHHHHHHHHHHHTTCSEEEE-ES
T ss_pred CCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCC-CEEEEEEEeC------CH-HHHHHHHHHHHhCCCCEEEE-CC
Confidence 357888887653 11 00344677889999999 8877655554 22 45777777776557999998 54
No 402
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=21.69 E-value=3.8e+02 Score=25.11 Aligned_cols=117 Identities=13% Similarity=0.019 Sum_probs=67.3
Q ss_pred EEEEEEeCC-----CcCch-HHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEcCCchH
Q 004136 36 KIGAIVDAN-----SQMGK-QAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWE 108 (771)
Q Consensus 36 ~IG~i~p~s-----~~~g~-~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~s~ 108 (771)
+||++.... ..... .-..|++-++++.+-..... .+ .....+...+.+.+.+++.. .++.+|+... ..
T Consensus 116 ~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~---~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~ 190 (276)
T 2h0a_A 116 IFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPD---RL-YITRHSQEGGRLALRHFLEKASPPLNVFAGA-DQ 190 (276)
T ss_dssp EEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGG---GE-EEECSSHHHHHHHHHHHHTTCCSSEEEECSS-HH
T ss_pred eEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChH---He-eecCCChHHHHHHHHHHHhCCCCCCEEEECC-cH
Confidence 788887654 23445 66788998888754221111 11 12234677788888888853 3589999643 34
Q ss_pred hHHHHHHhhccCC--cc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 109 ETAVVAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 109 ~~~~v~~~~~~~~--iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
.+..+...+.+.+ +| +++.... + ..... . +..+..+...+++..++.+.
T Consensus 191 ~a~g~~~al~~~g~~vP~di~vvg~d~~---~-~~~~~-~-lttv~~~~~~~g~~a~~~l~ 245 (276)
T 2h0a_A 191 VALGVLEEAVRLGLTPGRDVRVLGFDGH---P-FAEEA-G-LSTIAQPVEAMGARAAQLLL 245 (276)
T ss_dssp HHHHHHHHHHTTSCTTTTSEEEEEESCC---T-HHHHH-T-CEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeCCC---c-hhhhc-c-eeEecCCHHHHHHHHHHHHH
Confidence 4444555555544 44 6665543 2 22211 1 45566677777777777663
No 403
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=21.29 E-value=64 Score=32.42 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=54.0
Q ss_pred CCCCCChhHhhhCCceEEE-ecC-hHHHHHHHHhcCCCCCCcccCCCCHHHHHHHHHcCCceEEEecchhHHH-HHHhcC
Q 004136 670 EPNVTDIQSLKSGNLKVGC-VDD-SFVKKYLEEVLGFRSGNIVPFGNTEANYIQKFENNTIDSLFLERPYEKV-FLDKYC 746 (771)
Q Consensus 670 ~~~i~~~~dL~~~~~~~g~-~~~-s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~-~~~~~c 746 (771)
..+|++++||+ |+|+-+ ..+ ......++. .+-....+ ...|.+.+|++|-+|+.......+.. -..+.+
T Consensus 144 ~kpI~s~~Dlk--GlKiR~~~~~s~~~~~~~~a-lGa~pv~m-----~~~Evy~ALq~GvvDg~e~~~~~~~~~~~~Ev~ 215 (328)
T 3u65_B 144 RAPYASLGQLK--KQTIALSSLDSSVLGTCFRI-CGFDIKDA-----PNARLAPLLKAGSIDGFLSVHLFTWATGFYRYI 215 (328)
T ss_dssp SSCCSSHHHHH--HSEEEECSTTHHHHHHHHHH-HTCEEEEC-----TTCCHHHHHHHTSCCEEEECHHHHHHSCGGGGC
T ss_pred CCCCCCHHHHC--CCEEEECCCCChHHHHHHHH-CCCeeeec-----CHHHHHHHHHcCccceEecCHHHHHHcchhhcC
Confidence 35799999999 999987 444 455566665 34322222 36678999999999999987665531 112234
Q ss_pred CceeEeeeeeeceEEEEEec
Q 004136 747 KKYTAINTYRFGGLGFVSNI 766 (771)
Q Consensus 747 ~~l~~~~~~~~~~~g~~~~k 766 (771)
+.+...+ .....+.+++.+
T Consensus 216 ky~~~~~-h~~~~~~~~~n~ 234 (328)
T 3u65_B 216 SYALDTK-ICPAVIGMLISD 234 (328)
T ss_dssp CEEECSC-CEEEEEEEEEEH
T ss_pred cEEEEcC-ccccceEEEEcH
Confidence 4344444 112345555554
No 404
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=21.20 E-value=2.7e+02 Score=24.40 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=47.7
Q ss_pred CeEEEEEEEeCC--CCC-CcchHHHHHHHHhcc-----CCeEEEEeeecCCCCCCCCchHHHHHHHHHhhh-CCceEEEE
Q 004136 167 WRRVAAIYEDNV--YGG-DSGKLALLAEALQNV-----SSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIV 237 (771)
Q Consensus 167 w~~v~ii~~~~~--~g~-~~~~~~~l~~~~~~~-----g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~~~vIv~ 237 (771)
--++++|...|. .|. .+.....+.+.+++. | .++.....++.+. ..+.+.+++..+ .++|+|+.
T Consensus 5 ~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G-~~v~~~~iv~Dd~------~~i~~~l~~~~~~~~~DlVit 77 (167)
T 1uuy_A 5 EYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGG-AKVVATAVVPDEV------ERIKDILQKWSDVDEMDLILT 77 (167)
T ss_dssp SEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTS-EEEEEEEEECSCH------HHHHHHHHHHHHTSCCSEEEE
T ss_pred CcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCC-cEEeEEEEcCCCH------HHHHHHHHHHHhcCCCCEEEE
Confidence 357888876543 120 012234566777777 9 8887776666544 678888887764 47999998
Q ss_pred EecCh-----hHHHHHHHHH
Q 004136 238 LQASL-----DMTIHLFTEA 252 (771)
Q Consensus 238 ~~~~~-----~~~~~il~~a 252 (771)
.+.. +.....+.++
T Consensus 78 -tGG~g~g~~D~t~~a~~~~ 96 (167)
T 1uuy_A 78 -LGGTGFTPRDVTPEATKKV 96 (167)
T ss_dssp -ESCCSSSTTCCHHHHHHHH
T ss_pred -CCCCCCCCCCchHHHHHHH
Confidence 5432 3344445444
No 405
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=21.20 E-value=5.2e+02 Score=24.30 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=46.1
Q ss_pred EEEEEEEeCCCcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCC-------CHHHHH----HHHHHHHhcCCeEEEEc
Q 004136 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-------DPFQAA----TAAQELINKEKVKVIAG 103 (771)
Q Consensus 35 I~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~-------~~~~a~----~~~~~li~~~~v~aviG 103 (771)
.||.+|-|.++ ..+-.++..+++.+. +++.++.....+.+. +...+. +.+.++. ++++.+++=
T Consensus 2 mrilvINPnts---~~~T~~i~~~~~~~~--~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~-~~g~d~ivi 75 (245)
T 3qvl_A 2 VRIQVINPNTS---LAMTETIGAAARAVA--APGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGR-EQGVDGHVI 75 (245)
T ss_dssp EEEEEECSSCC---HHHHHHHHHHHHHHC--CTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHH-HHTCSEEEE
T ss_pred CEEEEEeCCCC---HHHHHHHHHHHHHhc--CCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHH-HCCCCEEEE
Confidence 58899999884 455566666666554 357777766555332 222222 2233333 467776664
Q ss_pred CCchHhHHHHHHhhccCCccEEee
Q 004136 104 METWEETAVVAEIASRVQVPILSF 127 (771)
Q Consensus 104 p~~s~~~~~v~~~~~~~~iP~Is~ 127 (771)
.-.+... +..+-+..++|+|..
T Consensus 76 aCnt~~~--l~~lr~~~~iPvigi 97 (245)
T 3qvl_A 76 ASFGDPG--LLAARELAQGPVIGI 97 (245)
T ss_dssp C-CCCTT--HHHHHHHCSSCEEEH
T ss_pred eCCChhH--HHHHHHHcCCCEECc
Confidence 4333332 233334457887753
No 406
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=21.20 E-value=2.9e+02 Score=24.05 Aligned_cols=68 Identities=6% Similarity=-0.145 Sum_probs=43.1
Q ss_pred EEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC-C-ceEEEEEecChhH
Q 004136 170 VAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-Q-SRVFIVLQASLDM 244 (771)
Q Consensus 170 v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~-~~vIv~~~~~~~~ 244 (771)
+-|....|.-| ..+.+.+.+.|++.| .+|...-.+... +.+.+++...+.+...+ . -+.|++ ++++.-
T Consensus 13 ~~i~igsDhaG--~~lK~~i~~~L~~~G-~eV~D~G~~~~~---~~dYpd~a~~va~~V~~g~~d~GIli-CGTGiG 82 (155)
T 1o1x_A 13 VKIAIASDHAA--FELKEKVKNYLLGKG-IEVEDHGTYSEE---SVDYPDYAKKVVQSILSNEADFGILL-CGTGLG 82 (155)
T ss_dssp CEEEEEECSTT--HHHHHHHHHHHHHTT-CEEEECCCCSSS---CCCHHHHHHHHHHHHHTTSCSEEEEE-ESSSHH
T ss_pred eeEEEeeCchH--HHHHHHHHHHHHHCC-CEEEEeCCCCCC---CCChHHHHHHHHHHHHcCCCceEEEE-cCCcHH
Confidence 33444445567 889999999999999 888776543321 22345666666554433 3 466666 776654
No 407
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=21.13 E-value=2e+02 Score=25.63 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=41.3
Q ss_pred eEEEEEEEeCC--CC-CCcchHHHHHHHHh---ccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhC-CceEEEEEec
Q 004136 168 RRVAAIYEDNV--YG-GDSGKLALLAEALQ---NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQA 240 (771)
Q Consensus 168 ~~v~ii~~~~~--~g-~~~~~~~~l~~~~~---~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~~~vIv~~~~ 240 (771)
-+++||...|+ .| ..+.-...+.+.++ +.| .++ ....++.+. ..+.+.+++..+. ++|+||. .+
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G-~~v-~~~iv~Dd~------~~I~~~l~~~~~~~~~DlVit-tG 76 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITP-FEV-EYRVIPDER------DLIEKTLIELADEKGCSLILT-TG 76 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSC-CEE-EEEEECSCH------HHHHHHHHHHHHTSCCSEEEE-ES
T ss_pred CEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCC-CEE-EEEEcCCCH------HHHHHHHHHHHhcCCCCEEEE-CC
Confidence 36777776553 11 00233566777666 889 888 555555443 6788888877763 7999998 54
No 408
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.06 E-value=4.2e+02 Score=23.23 Aligned_cols=44 Identities=11% Similarity=-0.065 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCeEEEEcCCchHh-HHHHHHhhccCCccEEeec
Q 004136 85 AATAAQELINKEKVKVIAGMETWEE-TAVVAEIASRVQVPILSFA 128 (771)
Q Consensus 85 a~~~~~~li~~~~v~aviGp~~s~~-~~~v~~~~~~~~iP~Is~~ 128 (771)
..+.+.+++.+.+-..++|-+.|.. +...+..+...+++.....
T Consensus 26 ~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 70 (186)
T 1m3s_A 26 EADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVG 70 (186)
T ss_dssp HHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETT
T ss_pred HHHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeC
Confidence 3445555555667778889877754 3345556667788776553
No 409
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=20.99 E-value=1.8e+02 Score=27.86 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=66.5
Q ss_pred EEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEe-cCCC----CHHHHHHHHHHHHhcCCeEEEEcCCchHh
Q 004136 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNR----DPFQAATAAQELINKEKVKVIAGMETWEE 109 (771)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~-D~~~----~~~~a~~~~~~li~~~~v~aviGp~~s~~ 109 (771)
+||++.... ......-..|++.++++.+-.... +++.. .... +...+.+.+.+++.. ++.+|+.... ..
T Consensus 124 ~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ai~~~~d-~~ 198 (288)
T 2qu7_A 124 EVGLLLANPNISTTIGRKNGYNKAISEFDLNVNP---SLIHYSDQQLGTNAQIYSGYEATKTLLSK-GIKGIVATNH-LL 198 (288)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCG---GGEEECCSSCSHHHHHHHHHHHHHHHHHT-TCCEEEECSH-HH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCc---ceEEeccCCccccCCHHHHHHHHHHHHhc-CCCEEEECCc-HH
Confidence 577776543 223445567788777775321110 11110 3334 566777788888855 8899997543 33
Q ss_pred HHHHHHhhccCC--cc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 110 TAVVAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 110 ~~~v~~~~~~~~--iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
+..+...+.+.+ +| +++.... + ......|.+..+..+...+++..++.+.
T Consensus 199 a~g~~~al~~~g~~vP~di~vvg~d~~---~-~~~~~~p~lttv~~~~~~~g~~a~~~l~ 254 (288)
T 2qu7_A 199 LLGALQAIKESEKEIKKDVIIVGFDDS---Y-WNEIYTPKLTVISQPVKEMGQVAAKMIY 254 (288)
T ss_dssp HHHHHHHHHHSSCCBTTTBEEEEESCC---T-HHHHSSSCCCEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCceEEEEeCCh---H-HHhhcCCCccEEecCHHHHHHHHHHHHH
Confidence 444444444443 34 7776654 2 2221224455666777788887777763
No 410
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=20.94 E-value=4.2e+02 Score=23.11 Aligned_cols=43 Identities=14% Similarity=-0.047 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCeEEEEcCCchHhH-HHHHHhhccCCccEEee
Q 004136 85 AATAAQELINKEKVKVIAGMETWEET-AVVAEIASRVQVPILSF 127 (771)
Q Consensus 85 a~~~~~~li~~~~v~aviGp~~s~~~-~~v~~~~~~~~iP~Is~ 127 (771)
..+.+.+++.+.+-..++|.+.|... ...+..+...+.+....
T Consensus 29 ~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~ 72 (180)
T 1jeo_A 29 KLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFV 72 (180)
T ss_dssp HHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHTTCCEEET
T ss_pred HHHHHHHHHHhCCEEEEEeecHHHHHHHHHHHHHHHcCCeEEEe
Confidence 34555555556677788898777543 34555556678877654
No 411
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=20.92 E-value=1.6e+02 Score=28.47 Aligned_cols=86 Identities=12% Similarity=-0.033 Sum_probs=51.7
Q ss_pred HHHHHHcCCeEEEEEEEeC--CCCCCc-chHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHHHhhhCCceEE
Q 004136 159 ADLARKYNWRRVAAIYEDN--VYGGDS-GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (771)
Q Consensus 159 ~~~l~~~~w~~v~ii~~~~--~~g~~~-~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vI 235 (771)
+.-++.-+-+.|+++..+. +|. . ...+.+.+.+++.| ..+..... ..+ .......++.+.+.+.|.|
T Consensus 5 Ar~L~~~~s~~Igvi~~~~~~~~~--~~~~~~gi~~~a~~~g-~~~~~~~~-~~~------~~~~~~~~~~l~~~~vdGi 74 (301)
T 3miz_A 5 ARLIRSSRSNTFGIITDYVSTTPY--SVDIVRGIQDWANANG-KTILIANT-GGS------SEREVEIWKMFQSHRIDGV 74 (301)
T ss_dssp -------CCCEEEEEESSTTTCCS--CHHHHHHHHHHHHHTT-CEEEEEEC-TTC------HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHhhCCCCEEEEEeCCCcCccc--HHHHHHHHHHHHHHCC-CEEEEEeC-CCC------hHHHHHHHHHHHhCCCCEE
Confidence 4445555667899999763 455 6 88999999999999 87765331 111 1345667778888899999
Q ss_pred EEEecChhHHHHHHHHHHHcCC
Q 004136 236 IVLQASLDMTIHLFTEANRMGL 257 (771)
Q Consensus 236 v~~~~~~~~~~~il~~a~~~g~ 257 (771)
++....... .++.+.+.++
T Consensus 75 Ii~~~~~~~---~~~~~~~~~i 93 (301)
T 3miz_A 75 LYVTMYRRI---VDPESGDVSI 93 (301)
T ss_dssp EEEEEEEEE---CCCCCTTCCC
T ss_pred EEecCCccH---HHHHHHhCCC
Confidence 982333222 3444444444
No 412
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=20.81 E-value=7.9e+02 Score=26.29 Aligned_cols=122 Identities=12% Similarity=0.093 Sum_probs=49.8
Q ss_pred CcchhHHHHHHHHHHHhhCcccccccCCCCCCCcEEEEEEEeCCCcCch------------HHHHHHHHHHHHHhcCCCC
Q 004136 1 MNRFFFLVLIIASELVFVSPGVESASTNVNIEEVTKIGAIVDANSQMGK------------QAITAMKIAVQNFNSDSRN 68 (771)
Q Consensus 1 m~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~I~IG~i~p~s~~~g~------------~~~~a~~~Av~~iN~~~~g 68 (771)
|||.+++.+.+++. ++++|+...+. ....++|-.+.++++.... .-..-+.-.++++++..++
T Consensus 1 ~~~~~~~~~~l~~~-~~~~~~~~~~~----~~~~l~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~~~ 75 (552)
T 2z1a_A 1 MKRREVLQAGMALG-GLAGLGRALAQ----GGFTLTLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKN 75 (552)
T ss_dssp --------------------------------CEEEEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSS
T ss_pred CchhHHHHHHHHHH-HHhccCCcCCC----CCeeEEEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhCCC
Confidence 77775444333333 33444322211 2467999999888843211 1123345566677665332
Q ss_pred cEEEEEEecC-CCCHHHH---HHHHHHHHhcCCeE-EEEcCCch-HhHHHHHHhhccCCccEEeec
Q 004136 69 HKLSLQIRDH-NRDPFQA---ATAAQELINKEKVK-VIAGMETW-EETAVVAEIASRVQVPILSFA 128 (771)
Q Consensus 69 ~~i~l~~~D~-~~~~~~a---~~~~~~li~~~~v~-aviGp~~s-~~~~~v~~~~~~~~iP~Is~~ 128 (771)
.+-+..-|. .+++... .....++++.-++. +++|...- .....+....+..++|+++..
T Consensus 76 -~l~l~~GD~~~gs~~~~~~~~~~~~~~ln~lg~d~~~lGNHEfd~g~~~l~~~l~~~~~~~L~aN 140 (552)
T 2z1a_A 76 -PLFLDAGDVFQGTLYFNQYRGLADRYFMHRLRYRAMALGNHEFDLGPGPLADFLKGARFKVVSAN 140 (552)
T ss_dssp -EEEEECSCCSSSSHHHHHHTTHHHHHHHHHTTCCEEECCGGGGTTCHHHHHHHHTTCCSEEECTT
T ss_pred -EEEEeCCCCCCCcHHHHHhCCcHHHHHHHhcCCCccccccccccCCHHHHHHHHhhCCCCEEEEE
Confidence 243444442 2333221 12233444444554 45563221 234566777888999998643
No 413
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=20.79 E-value=1.4e+02 Score=33.31 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=39.3
Q ss_pred CCceEEEecChHHHH--HHHHhcCCCCCCcc--cCCCCHHHHHHHHHcCCceEEEecchhHHHHHHhcCCceeEee
Q 004136 682 GNLKVGCVDDSFVKK--YLEEVLGFRSGNIV--PFGNTEANYIQKFENNTIDSLFLERPYEKVFLDKYCKKYTAIN 753 (771)
Q Consensus 682 ~~~~~g~~~~s~~~~--~l~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~~~c~~l~~~~ 753 (771)
..+++.+....-..+ -+... ....+. .-. +.+|+|+++++|+.||+..|...+.-. .+ |+..-++.
T Consensus 340 ~~vrWCv~s~~E~~KC~~~~~~---~~p~~~Cv~~~-s~~dCi~~I~~g~ADa~tldgg~vy~A-g~-~~L~Pv~~ 409 (687)
T 3mc2_A 340 QRVKWCAVGQQERTKCDQWSAV---SGGALACATEE-TPEDCIAATMKGEADAMSLDGGFAYVA-GH-CGLVPVLA 409 (687)
T ss_dssp CCEEEEEESSHHHHHHHHHHHH---TTTSEEEEEES-SHHHHHHHHHHTSSCBEEECHHHHHHH-HH-TTCEEEEE
T ss_pred CceEEccCCHHHHHHHHHHHhh---cCCceEEEeCC-CHHHHHHHHhCCCCCEEEECchHheeh-hh-cCcEEEee
Confidence 357888866533222 12221 112232 223 499999999999999999987775422 24 87333444
No 414
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=20.73 E-value=2.5e+02 Score=28.18 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=63.5
Q ss_pred EeecCcHHHHHHHHHHHHHcCCeEEEEEEEeCCCCCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCchHHHHHHHH
Q 004136 146 RMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELK 225 (771)
Q Consensus 146 r~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~~~~g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~~~~~~~~l~ 225 (771)
...|+....++.+.++++..+.++|.|.++.+.+ .+.|++.++..+ ++++. +.+. ..++.
T Consensus 259 mClPSle~I~rqIk~~vk~~~lksVFIATDa~~~------~~ELk~~L~~~~-v~vv~---~~pe----------~a~ID 318 (362)
T 3zy2_A 259 ICSPSKQQILEQIVEKVGSIGAKSVFVASDKDHM------IDEINEALKPYE-IEAHR---QEPD----------DMYTS 318 (362)
T ss_dssp HHSCCHHHHHHHHHHHHHHHTCSEEEEEESSCCC------HHHHHHHHGGGT-CCEEC---CSSC----------CHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhcCCcEEEEecCCHHH------HHHHHHHhhccC-ceEEE---eCCc----------hhHHH
Confidence 3468999999999999999899998888865442 788888898777 66542 2222 22333
Q ss_pred HhhhCCceEEEEEecChhHHHHHHHHHHHcCCCC
Q 004136 226 KVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (771)
Q Consensus 226 ~l~~~~~~vIv~~~~~~~~~~~il~~a~~~g~~~ 259 (771)
...-..++..|- .|...-...+.++=.-+|+..
T Consensus 319 ~~I~~~A~~FIG-N~~SSFSa~I~rERdi~G~~~ 351 (362)
T 3zy2_A 319 LAIMGRADLFVG-NCVSTFSHIVKRERDHAGQSP 351 (362)
T ss_dssp HHHHHHSSEEEE-CTTCHHHHHHHHHHHHSSSSC
T ss_pred HHHHHhCCEeec-CccccccHHHHHHHHhcCCCC
Confidence 344446888777 676666666666666677433
No 415
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=20.59 E-value=2.1e+02 Score=28.71 Aligned_cols=56 Identities=16% Similarity=0.065 Sum_probs=36.5
Q ss_pred cCCCCHHHHHHHHHcCCceEEEecchhHHHHHH-hcCCceeEee-e-ee------eceEEE-EEecCCC
Q 004136 711 PFGNTEANYIQKFENNTIDSLFLERPYEKVFLD-KYCKKYTAIN-T-YR------FGGLGF-VSNIIYS 769 (771)
Q Consensus 711 ~~~~~~~~~~~~v~~~~~~a~i~~~~~~~~~~~-~~c~~l~~~~-~-~~------~~~~g~-~~~k~s~ 769 (771)
.-.+ ..++++++++|++|+...+...... .. +.|+ +..+- . .. ..+|++ +++|+|+
T Consensus 39 ~~~~-~~~ci~aI~~g~AD~~~ld~~~~~~-A~~~~~~-l~pi~~e~~~~~~~~~~~Y~avaVVkk~s~ 104 (334)
T 1h45_A 39 KRDS-PIQCIQAIAENRADAVTLDGGFIYE-AGLAPYK-LRPVAAEVYGTERQPRTHYYAVAVVKKGGS 104 (334)
T ss_dssp ECSS-HHHHHHHHHTTSCCBEEECHHHHHH-HHSTTTC-EEEEEEEEEECSSSEESEEEEEEEEETTCC
T ss_pred EcCC-HHHHHHHHHcCCCCEEEeCccceEE-eecCccC-CEEEEEEeecCCCCCCCceEEEEEEeCCCC
Confidence 4445 8999999999999999988765432 33 4576 55443 3 22 236666 5556654
No 416
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=20.57 E-value=5.6e+02 Score=24.41 Aligned_cols=152 Identities=12% Similarity=0.092 Sum_probs=79.6
Q ss_pred CcEEEE-EEecCCCCHHHHHHHHHHHHhcCCeE-EEEcCCchHhHH------HHHHhhccCCccEEeecCCCCCCCccCC
Q 004136 68 NHKLSL-QIRDHNRDPFQAATAAQELINKEKVK-VIAGMETWEETA------VVAEIASRVQVPILSFAAPAVTPLSMSR 139 (771)
Q Consensus 68 g~~i~l-~~~D~~~~~~~a~~~~~~li~~~~v~-aviGp~~s~~~~------~v~~~~~~~~iP~Is~~a~~~~~~l~~~ 139 (771)
|.+++. .+. ..+++..++ .+. +.++. +|+|........ ....++....+|++..... .+ ....
T Consensus 99 g~~~~~~~v~-~~g~~~~~I-~a~----~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~--~~-~~~~ 169 (294)
T 3loq_A 99 GIKAEVIKPF-PAGDPVVEI-IKA----SENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHD--MV-VNSL 169 (294)
T ss_dssp TCEEEECSSC-CEECHHHHH-HHH----HTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCC--TT-TTCT
T ss_pred CCCcceeEee-ccCChhHhe-eec----cCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCc--cc-cCcc
Confidence 566665 333 245777777 222 34444 555643222211 2345677778998766544 22 1111
Q ss_pred CCceEEEeecCc--HHHHHHHHHHHHHcCCeEEEEEEEeCCC-CCCcchHHHHHHHHhccCCeEEEEeeecCCCCCCCCc
Q 004136 140 RWPYLIRMASND--SEQMKCIADLARKYNWRRVAAIYEDNVY-GGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDP 216 (771)
Q Consensus 140 ~~p~~fr~~p~~--~~~~~a~~~~l~~~~w~~v~ii~~~~~~-g~~~~~~~~l~~~~~~~g~~~i~~~~~~~~~~~~~d~ 216 (771)
...-++-+-.+. ....+...++++.++ .++.+++-.+.. . ....+.+.+.+++.| +++..... .+.
T Consensus 170 ~~~Ilv~~d~s~~s~~al~~a~~la~~~~-~~l~ll~v~~~~~~--~~~l~~~~~~l~~~~-~~~~~~~~--~g~----- 238 (294)
T 3loq_A 170 FDRVLVAYDFSKWADRALEYAKFVVKKTG-GELHIIHVSEDGDK--TADLRVMEEVIGAEG-IEVHVHIE--SGT----- 238 (294)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHHHHHHT-CEEEEEEECSSSCC--HHHHHHHHHHHHHTT-CCEEEEEE--CSC-----
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHhhhcC-CEEEEEEEccCchH--HHHHHHHHHHHHHcC-CcEEEEEe--cCC-----
Confidence 112233222221 112223333445555 466677665432 3 566778888888888 77554332 222
Q ss_pred hHHHHHHHHHhhhCCceEEEEEecCh
Q 004136 217 KEAVRGELKKVQDKQSRVFIVLQASL 242 (771)
Q Consensus 217 ~~~~~~~l~~l~~~~~~vIv~~~~~~ 242 (771)
-...+++..++.++|.|++ ...+
T Consensus 239 --~~~~I~~~a~~~~~dLlV~-G~~~ 261 (294)
T 3loq_A 239 --PHKAILAKREEINATTIFM-GSRG 261 (294)
T ss_dssp --HHHHHHHHHHHTTCSEEEE-ECCC
T ss_pred --HHHHHHHHHHhcCcCEEEE-eCCC
Confidence 2455666667778999999 6554
No 417
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=20.17 E-value=3.2e+02 Score=26.89 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=66.4
Q ss_pred EEEEEEeCC-CcCchHHHHHHHHHHHHHhcCCCCcEEEEEEecCCCCHHHHHHHHHHHHhc-CCeEEEEcCCchHhHHHH
Q 004136 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVV 113 (771)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~i~l~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~s~~~~~v 113 (771)
+||++.... ......-..|++.|+++.+-.. ...+ +.....+...+.+.+.+++.. .++.+|+.... ..+..+
T Consensus 179 ~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd-~~A~g~ 253 (340)
T 1qpz_A 179 EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV---PESW-IVQGDFEPESGYRAMQQILSQPHRPTAVFCGGD-IMAMGA 253 (340)
T ss_dssp CEEEECCCTTSHHHHHHHHHHHHHHHHTTCCC---CGGG-BCCCCSSHHHHHHHHHHHHTSSSCCSEEEESSH-HHHHHH
T ss_pred EEEEEeCCCccccHHHHHHHHHHHHHHCCCCC---Chhh-eEeCCCCHHHHHHHHHHHHcCCCCCcEEEECCH-HHHHHH
Confidence 466665432 2223445667777776643211 0001 122334677788888888853 46889997543 344444
Q ss_pred HHhhccCC--cc----EEeecCCCCCCCccCCCCceEEEeecCcHHHHHHHHHHHH
Q 004136 114 AEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (771)
Q Consensus 114 ~~~~~~~~--iP----~Is~~a~~~~~~l~~~~~p~~fr~~p~~~~~~~a~~~~l~ 163 (771)
...+.+.| +| +|++... +. .....|.+..+..+...+++..++.+.
T Consensus 254 ~~al~~~G~~vP~disvig~D~~---~~-~~~~~p~lttv~~~~~~~g~~a~~~l~ 305 (340)
T 1qpz_A 254 LCAADEMGLRVPQDVSLIGYDNV---RN-ARYFTPALTTIHQPKDSLGETAFNMLL 305 (340)
T ss_dssp HHHHHHTTCCTTTTCEEEEEECC---TT-GGGSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCeEEEeECCc---hH-hhccCCceeEEecCHHHHHHHHHHHHH
Confidence 44444443 34 7777654 22 332335566677777888887777663
Done!