Query 004138
Match_columns 771
No_of_seqs 435 out of 1472
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 93.6 0.21 7.2E-06 40.5 7.1 58 219-285 16-74 (76)
2 2ayd_A WRKY transcription fact 90.3 1.1 3.7E-05 36.3 7.6 58 68-134 16-74 (76)
3 1wj2_A Probable WRKY transcrip 89.9 0.43 1.5E-05 38.8 5.1 41 237-285 36-77 (78)
4 2rpr_A Flywch-type zinc finger 89.2 0.39 1.3E-05 40.2 4.6 50 219-286 26-75 (87)
5 1wj2_A Probable WRKY transcrip 86.8 1.1 3.6E-05 36.5 5.5 58 68-134 19-77 (78)
6 2rpr_A Flywch-type zinc finger 69.8 6.2 0.00021 32.7 5.2 32 90-132 41-72 (87)
7 3kks_A Integrase, IN; beta-str 66.0 12 0.0004 33.6 6.8 66 382-457 2-67 (152)
8 1cxq_A Avian sarcoma virus int 46.8 54 0.0018 29.7 7.9 71 382-457 11-81 (162)
9 3hph_A Integrase, IN; protein- 42.4 41 0.0014 32.3 6.7 66 383-458 61-126 (219)
10 1c0m_A Protein (integrase); HI 41.9 55 0.0019 32.1 7.6 71 382-457 10-80 (238)
11 3l3u_A POL polyprotein; DNA in 32.5 62 0.0021 29.1 5.8 63 382-454 9-71 (163)
12 1bco_A MUA domain II, bacterio 32.0 72 0.0025 33.0 6.9 71 381-454 15-93 (327)
13 2x78_A Integrase; viral protei 28.6 97 0.0033 28.9 6.6 70 382-457 13-83 (200)
14 1qc6_A EVH1 domain from ENA/VA 27.5 24 0.00081 31.6 1.8 23 45-67 86-108 (130)
15 3hot_A Transposable element ma 26.6 1.5E+02 0.0052 30.4 8.3 56 395-453 186-252 (345)
16 1mke_A WIP - N-WAsp, fusion pr 25.8 24 0.00081 32.6 1.4 24 45-68 117-140 (152)
17 1fme_A FSD-EY peptide; beta-BE 22.7 47 0.0016 20.3 1.8 20 196-215 6-25 (28)
18 3av9_A Integrase, IN; protein- 22.5 1.2E+02 0.0042 27.9 6.0 65 382-456 29-93 (183)
19 2l69_A Rossmann 2X3 fold prote 22.3 61 0.0021 26.8 3.1 30 200-229 6-35 (134)
20 1evh_A WH1 domain, protein (ME 21.9 32 0.0011 29.9 1.4 21 45-65 85-105 (112)
21 1egx_A VAsp, vasodilator-stimu 21.8 32 0.0011 30.1 1.4 21 45-65 87-107 (115)
22 2lju_A Putative oxidoreductase 21.1 78 0.0027 27.3 3.7 29 196-228 60-88 (108)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=93.56 E-value=0.21 Score=40.50 Aligned_cols=58 Identities=21% Similarity=0.370 Sum_probs=41.0
Q ss_pred cCcEEEEeeeeeccCCCceEEEEEeecCCCcccCcccCccceeeeeecC-cceEEEEEEecccccccc
Q 004138 219 TGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQHPSRVGCGAFMRIKRKE-FGSWIVDRLQKDHNHDLE 285 (771)
Q Consensus 219 ~GF~vr~~~s~r~k~~g~~~~~~~~C~r~G~~~~~rtGC~a~i~v~~~~-~~kW~V~~~~~~HNH~l~ 285 (771)
-||..|+=--+ .-+....-+..|.|+. .||||+=.|.+.. ++...++.+..+|||++.
T Consensus 16 DGy~WRKYGQK-~ikgs~~PRsYYrCt~--------~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 16 DGYRWRKYGQK-SVKGSPYPRSYYRCSS--------PGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp CSSCEEEEEEE-CCTTCSSCEEEEEECS--------TTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred CCchhhhCccc-ccCCCCCceeEeEcCC--------CCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 46777653322 2222334466899975 3799999998876 778888999999999874
No 2
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=90.25 E-value=1.1 Score=36.34 Aligned_cols=58 Identities=17% Similarity=0.376 Sum_probs=41.7
Q ss_pred cCeEEEEeeeeecCCCCcEEEEEEEecCcccccCCccCcccEEEEEEe-cCCcEEEEEEecCCCcCCC
Q 004138 68 VGFKIRIGQLYRSRTDGSVSSRRFVCSKEGFQLNSRTGCSAYIRVQKR-DSGKWVLDQMKKDHNHEFD 134 (771)
Q Consensus 68 ~GF~vr~~~~~~~~~~~~~~~~~~~C~~~g~~~~~r~~C~a~~~v~~~-~~~~w~v~~~~~~HnH~l~ 134 (771)
-||..|+--.+.. ++..--+..|-|+- .||+|+=.|.+. +|..-.++-...+|||++.
T Consensus 16 DGy~WRKYGQK~i-kgs~~PRsYYrCt~--------~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 16 DGYRWRKYGQKSV-KGSPYPRSYYRCSS--------PGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp CSSCEEEEEEECC-TTCSSCEEEEEECS--------TTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred CCchhhhCccccc-CCCCCceeEeEcCC--------CCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 5788888555432 22222345688862 499999999986 4678888889999999874
No 3
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=89.88 E-value=0.43 Score=38.84 Aligned_cols=41 Identities=27% Similarity=0.521 Sum_probs=33.5
Q ss_pred eEEEEEeecCCCcccCcccCccceeeeeecC-cceEEEEEEecccccccc
Q 004138 237 VTSRRFVCSKEGFQHPSRVGCGAFMRIKRKE-FGSWIVDRLQKDHNHDLE 285 (771)
Q Consensus 237 ~~~~~~~C~r~G~~~~~rtGC~a~i~v~~~~-~~kW~V~~~~~~HNH~l~ 285 (771)
.-+..|.|+.. ||||+=.|.+.. ++.-.++.+..+|||++.
T Consensus 36 ~PRsYYrCt~~--------gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 36 YPRSYYKCTTP--------GCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp SCEEEEEEECS--------SCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CeeEEeecCcC--------CCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 34668999763 799999998866 778888899999999863
No 4
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=89.18 E-value=0.39 Score=40.25 Aligned_cols=50 Identities=16% Similarity=0.340 Sum_probs=31.6
Q ss_pred cCcEEEEeeeeeccCCCceEEEEEeecCCCcccCcccCccceeeeeecCcceEEEEEEeccccccccc
Q 004138 219 TGFRVRIGQLFRSKNDGSVTSRRFVCSKEGFQHPSRVGCGAFMRIKRKEFGSWIVDRLQKDHNHDLEC 286 (771)
Q Consensus 219 ~GF~vr~~~s~r~k~~g~~~~~~~~C~r~G~~~~~rtGC~a~i~v~~~~~~kW~V~~~~~~HNH~l~~ 286 (771)
.||...+.+... + ...+.|++.. +.+|+|++..... + | .....||||+..
T Consensus 26 ~Gy~Y~~~~~~~----~---~~yWrC~~~~-----~~kCrARi~T~~~--~---~-~~~~~HnH~p~~ 75 (87)
T 2rpr_A 26 ESFLYRKEKAAG----E---KVYWMCRDQA-----RLGCRSRAITQGH--R---I-MVMRSHCHQPDL 75 (87)
T ss_dssp TTEEEEEEEECS----S---CEEEEEGGGT-----TSCCCCEEEEETT--E---E-EECSCCSSCCCH
T ss_pred CCEEEEeeecCC----C---cEEEEecCCC-----CCCCCEEEEEcCC--C---E-ECCCCcCCCCch
Confidence 466665544321 1 2479998754 2489999888642 2 3 256789998764
No 5
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=86.78 E-value=1.1 Score=36.54 Aligned_cols=58 Identities=19% Similarity=0.356 Sum_probs=40.5
Q ss_pred cCeEEEEeeeeecCCCCcEEEEEEEecCcccccCCccCcccEEEEEEe-cCCcEEEEEEecCCCcCCC
Q 004138 68 VGFKIRIGQLYRSRTDGSVSSRRFVCSKEGFQLNSRTGCSAYIRVQKR-DSGKWVLDQMKKDHNHEFD 134 (771)
Q Consensus 68 ~GF~vr~~~~~~~~~~~~~~~~~~~C~~~g~~~~~r~~C~a~~~v~~~-~~~~w~v~~~~~~HnH~l~ 134 (771)
-||..||--.+.. ++..--+..|-|+- .||+|+=.|.+. .|..-.++-...+|||++.
T Consensus 19 DGy~WRKYGQK~i-kgs~~PRsYYrCt~--------~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 19 DGYRWRKYGQKVV-KGNPYPRSYYKCTT--------PGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp SSSCBCCCEEECC-TTCSSCEEEEEEEC--------SSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred CCchhhhCccccc-CCCcCeeEEeecCc--------CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 4677776544432 22222345678863 599999999986 4677888889999999874
No 6
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=69.84 E-value=6.2 Score=32.70 Aligned_cols=32 Identities=22% Similarity=0.525 Sum_probs=21.9
Q ss_pred EEEecCcccccCCccCcccEEEEEEecCCcEEEEEEecCCCcC
Q 004138 90 RFVCSKEGFQLNSRTGCSAYIRVQKRDSGKWVLDQMKKDHNHE 132 (771)
Q Consensus 90 ~~~C~~~g~~~~~r~~C~a~~~v~~~~~~~w~v~~~~~~HnH~ 132 (771)
.+.|++-. +.+|+|++.... ++ |. ....||||
T Consensus 41 yWrC~~~~-----~~kCrARi~T~~--~~---~~-~~~~HnH~ 72 (87)
T 2rpr_A 41 YWMCRDQA-----RLGCRSRAITQG--HR---IM-VMRSHCHQ 72 (87)
T ss_dssp EEEEGGGT-----TSCCCCEEEEET--TE---EE-ECSCCSSC
T ss_pred EEEecCCC-----CCCCCEEEEEcC--CC---EE-CCCCcCCC
Confidence 57887643 349999998854 22 32 56789995
No 7
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=66.03 E-value=12 Score=33.57 Aligned_cols=66 Identities=9% Similarity=0.073 Sum_probs=46.4
Q ss_pred CcEEEEcccccccCCCCcccEEEEEccCCcceeeeeeecccccchhHhHHHHHHHHHhcCCCCeEEecchhHHHHH
Q 004138 382 GDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQ 457 (771)
Q Consensus 382 ~dVv~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~E~~es~~W~~~~f~~~~~~~~p~~iitD~~~ai~~ 457 (771)
+++..+|.|+..++ ++++.+|..-+.+ ++..+ .+++.+...-+|..+....+ |.+|.||+......
T Consensus 2 n~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s 67 (152)
T 3kks_A 2 SHLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRYT---VLHLHSDNGPCFTA 67 (152)
T ss_dssp CCEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHS
T ss_pred CcEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhH
Confidence 36788899988433 5677788776655 55444 57777777666666555554 99999999987654
No 8
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=46.79 E-value=54 Score=29.68 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=46.9
Q ss_pred CcEEEEcccccccCCCCcccEEEEEccCCcceeeeeeecccccchhHhHHHHHHHHHhcCCCCeEEecchhHHHHH
Q 004138 382 GDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQ 457 (771)
Q Consensus 382 ~dVv~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~E~~es~~W~~~~f~~~~~~~~p~~iitD~~~ai~~ 457 (771)
.+++.+|.||.....+ -.+.++.+|..-+.+ +|+.+- +.+.+...-+|+......+ .|.+|.||+......
T Consensus 11 ~~~~~~D~~~~~~~~g-~~yl~~~iD~~Sr~i-~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 11 LQIWQTDFTLEPRMAP-RSWLAVTVDTASSAI-VVTQHG-RVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCEEEEEEEECGGGTT-SCEEEEEEETTTCCE-EEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHHS
T ss_pred CCEEEeeeeecccCCC-CEEEEEEEEcCCCeE-EEEECC-CccHHHHHHHHHHHHHHHC--CCeEEEeCCchhhhh
Confidence 4678889888755433 355677788776544 555554 6666666555655555443 488999999987653
No 9
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=42.44 E-value=41 Score=32.29 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=44.6
Q ss_pred cEEEEcccccccCCCCcccEEEEEccCCcceeeeeeecccccchhHhHHHHHHHHHhcCCCCeEEecchhHHHHHH
Q 004138 383 DAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQA 458 (771)
Q Consensus 383 dVv~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~E~~es~~W~~~~f~~~~~~~~p~~iitD~~~ai~~A 458 (771)
+++.+|.|+..++ ++++.+|..-+-+ .+.. +.+.+.+...-+|..+....+ |.+|+||+......+
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhhH
Confidence 5666887766543 5677788877766 4444 556666666666665555554 999999999876543
No 10
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=41.88 E-value=55 Score=32.05 Aligned_cols=71 Identities=11% Similarity=-0.009 Sum_probs=48.6
Q ss_pred CcEEEEcccccccCCCCcccEEEEEccCCcceeeeeeecccccchhHhHHHHHHHHHhcCCCCeEEecchhHHHHH
Q 004138 382 GDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQ 457 (771)
Q Consensus 382 ~dVv~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~E~~es~~W~~~~f~~~~~~~~p~~iitD~~~ai~~ 457 (771)
.+++.+|.||.....+ -.++++.+|..-+ .++|+.+- +++.+...-+|+......+ .|.+|.||+......
T Consensus 10 ~~~w~~D~~~~~~~~g-~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 80 (238)
T 1c0m_A 10 LQIWQTDFTLEPRMAP-RSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLG--RPKAIKTDNGSCFTS 80 (238)
T ss_dssp TSEEEEEEEECGGGCS-SCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEEECSCHHHHS
T ss_pred CCEEEEeeccccccCC-CEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhC--CCcEEEECCCCcccc
Confidence 4688999998765433 3566777777655 44566554 7777777766666655554 488999999987643
No 11
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=32.48 E-value=62 Score=29.15 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=43.0
Q ss_pred CcEEEEcccccccCCCCcccEEEEEccCCcceeeeeeecccccchhHhHHHHHHHHHhcCCCCeEEecchhHH
Q 004138 382 GDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMA 454 (771)
Q Consensus 382 ~dVv~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~E~~es~~W~~~~f~~~~~~~~p~~iitD~~~a 454 (771)
.+++.+|.||..++ ++++-+|..-+.+ ++..+ .+++.+...-++..+....+ |.+|.||+...
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~---~~~i~sD~G~~ 71 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP---VKTVHTDNGSN 71 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC---CCEEEECCCGG
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC---CcEEeecChHh
Confidence 36788999988653 5777788877655 55544 56677776666665555543 58999999753
No 12
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=32.03 E-value=72 Score=32.98 Aligned_cols=71 Identities=15% Similarity=-0.005 Sum_probs=48.6
Q ss_pred cCcEEEEcccccccC----CCC--cccEEEEEccCCcceeeeeeecccccchhHhHHHHHHHHHhcCCCCe--EEecchh
Q 004138 381 FGDAIIFDTSYRKTN----YLI--PFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPK--TIIADQD 452 (771)
Q Consensus 381 f~dVv~~D~Ty~tn~----y~~--pl~~~~Gvn~~~~~~~~g~al~~~E~~es~~W~~~~f~~~~~~~~p~--~iitD~~ 452 (771)
-++++.+|.|+.... .+. ...+.+.+|..-. .++|+.+...++.++..-+|...+...+ .|. +|.+|+-
T Consensus 15 p~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G--~P~~~~i~sDnG 91 (327)
T 1bco_A 15 AMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG--IPEDFHITIDNT 91 (327)
T ss_dssp TTTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC--EESSCEEECCCT
T ss_pred CCcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC--CCCCcEEEeeCc
Confidence 357888998876442 121 3445666776554 5588888888888888777776655543 577 9999998
Q ss_pred HH
Q 004138 453 MA 454 (771)
Q Consensus 453 ~a 454 (771)
..
T Consensus 92 ~~ 93 (327)
T 1bco_A 92 RG 93 (327)
T ss_dssp TS
T ss_pred hh
Confidence 54
No 13
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=28.57 E-value=97 Score=28.93 Aligned_cols=70 Identities=13% Similarity=-0.053 Sum_probs=44.1
Q ss_pred CcEEEEcc-cccccCCCCcccEEEEEccCCcceeeeeeecccccchhHhHHHHHHHHHhcCCCCeEEecchhHHHHH
Q 004138 382 GDAIIFDT-SYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQQ 457 (771)
Q Consensus 382 ~dVv~~D~-Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~E~~es~~W~~~~f~~~~~~~~p~~iitD~~~ai~~ 457 (771)
.+++.+|. ++.... ++..++++.+|..-+.+ +++.+ .+.+.+...-+| .....-..|.+|.||+......
T Consensus 13 ~~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~~~l---~~~~~~g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 13 FDKFFIDYIGPLPPS-QGYLYVLVVVDGMTGFT-WLYPT-KAPSTSATVKSL---NVLTSIAIPRVIHSDQGAAFTS 83 (200)
T ss_dssp TSEEEEEEECCCSCB-TTBCEEEEEEETTTCCE-EEEEE-SSSCHHHHHHHH---HHHTTTCCCSEEEECSCHHHHS
T ss_pred ccEEEEEEeCCCccC-CCCeEEEEEEeCCCCcE-EEEEC-CCCCHHHHHHHH---HHHHHhCCCcEEEecCCcceeh
Confidence 36788886 555443 34667778888776554 45555 565655544343 3333335699999999886643
No 14
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=27.53 E-value=24 Score=31.65 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.4
Q ss_pred CcCCCeeCCHHHHHHHHHHHhhc
Q 004138 45 PSVGLEFDTADDAREFYTQYAER 67 (771)
Q Consensus 45 p~~gm~F~s~~~a~~fy~~ya~~ 67 (771)
=.+|+.|.|++||.+|++.....
T Consensus 86 ~~~GL~F~se~eA~~F~~~~~~a 108 (130)
T 1qc6_A 86 QVYGLNFASKEEATTFSNAMLFA 108 (130)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHHH
Confidence 47899999999999999988764
No 15
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=26.58 E-value=1.5e+02 Score=30.38 Aligned_cols=56 Identities=11% Similarity=0.037 Sum_probs=35.5
Q ss_pred CCCCcccEEEEEccCCcceeeeeeecc---cccchhHhHHHHHHHHHh----cC----CCCeEEecchhH
Q 004138 395 NYLIPFATFVGINHHRHPVLLGCALVA---NESKESFTWLFNTWIRAM----FG----CHPKTIIADQDM 453 (771)
Q Consensus 395 ~y~~pl~~~~Gvn~~~~~~~~g~al~~---~E~~es~~W~~~~f~~~~----~~----~~p~~iitD~~~ 453 (771)
..+..+.+..+++..| ++++.++. .-+.+.|.-+|+.++..+ +. ..+.+|+.|...
T Consensus 186 ~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 186 RFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp TTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred CcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 3445566666777766 56666665 456777877777765554 21 236688999855
No 16
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=25.76 E-value=24 Score=32.57 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=19.9
Q ss_pred CcCCCeeCCHHHHHHHHHHHhhcc
Q 004138 45 PSVGLEFDTADDAREFYTQYAERV 68 (771)
Q Consensus 45 p~~gm~F~s~~~a~~fy~~ya~~~ 68 (771)
=.+|+.|.+++||..||+.=....
T Consensus 117 c~~GLnFade~EA~~F~~~V~~~l 140 (152)
T 1mke_A 117 CQVALNFANEEEAKKFRKAVTDLL 140 (152)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEeeCCHHHHHHHHHHHHHHH
Confidence 358999999999999999765543
No 17
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=22.71 E-value=47 Score=20.28 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=17.3
Q ss_pred CCCCCcccCHHHHHHHHHHH
Q 004138 196 PYAGLEFNSANEAYQFYQAY 215 (771)
Q Consensus 196 p~~Gm~F~S~eea~~fy~~Y 215 (771)
-+.|..|.++.|+++|+..|
T Consensus 6 kykgrtfrnekelrdfiekf 25 (28)
T 1fme_A 6 KYKGRTFRNEKELRDFIEKF 25 (28)
T ss_dssp ESSSCEECCHHHHHHHHHHC
T ss_pred hhcccccccHHHHHHHHHHh
Confidence 36789999999999999765
No 18
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=22.52 E-value=1.2e+02 Score=27.95 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=38.0
Q ss_pred CcEEEEcccccccCCCCcccEEEEEccCCcceeeeeeecccccchhHhHHHHHHHHHhcCCCCeEEecchhHHHH
Q 004138 382 GDAIIFDTSYRKTNYLIPFATFVGINHHRHPVLLGCALVANESKESFTWLFNTWIRAMFGCHPKTIIADQDMAIQ 456 (771)
Q Consensus 382 ~dVv~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~E~~es~~W~~~~f~~~~~~~~p~~iitD~~~ai~ 456 (771)
.+++.+|.|+..++| .++.||..-+.+ +++. +.+.+.....-++..+.... .+.+|.||+.....
T Consensus 29 ~~~w~~D~~~~~g~~-----~l~~vD~~Sr~~-~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~i~sDnG~ef~ 93 (183)
T 3av9_A 29 PGIWQLDCTHLEGKV-----ILVAVHVASGYI-EAEV-IPAETGQETAYFLLKLAGRW---PVKTVHTDNGSNFT 93 (183)
T ss_dssp TTEEEEEEEEETTEE-----EEEEEETTTTEE-EEEE-ESSCCHHHHHHHHHHHHHHS---CCCEEECSSHHHHH
T ss_pred CCEEEEeccccCCcE-----EEEEEECCCCCE-EEEE-eCCccchHHHHHHHHHHHHc---CCcEEEecCchhcc
Confidence 467778887763322 445556555544 6654 44555555544444433333 35999999988764
No 19
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.32 E-value=61 Score=26.80 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=25.4
Q ss_pred CcccCHHHHHHHHHHHHHhcCcEEEEeeee
Q 004138 200 LEFNSANEAYQFYQAYAEKTGFRVRIGQLF 229 (771)
Q Consensus 200 m~F~S~eea~~fy~~YA~~~GF~vr~~~s~ 229 (771)
.+|.+.||...-+..--++.||.||..+|.
T Consensus 6 vvfstdeetlrkfkdiikkngfkvrtvrsp 35 (134)
T 2l69_A 6 VVFSTDEETLRKFKDIIKKNGFKVRTVRSP 35 (134)
T ss_dssp EECCCCHHHHHHHHHHHHHTTCEEEEECSH
T ss_pred EEEeCCHHHHHHHHHHHHhcCceEEEecCH
Confidence 468888888888899999999999987763
No 20
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=21.88 E-value=32 Score=29.94 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.3
Q ss_pred CcCCCeeCCHHHHHHHHHHHh
Q 004138 45 PSVGLEFDTADDAREFYTQYA 65 (771)
Q Consensus 45 p~~gm~F~s~~~a~~fy~~ya 65 (771)
=..|+.|.|++||.+|++.-.
T Consensus 85 ~~~GLnF~se~eA~~F~~~v~ 105 (112)
T 1evh_A 85 QVYGLNFGSKEDANVFASAMM 105 (112)
T ss_dssp CEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHH
Confidence 478999999999999998654
No 21
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=21.76 E-value=32 Score=30.09 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.3
Q ss_pred CcCCCeeCCHHHHHHHHHHHh
Q 004138 45 PSVGLEFDTADDAREFYTQYA 65 (771)
Q Consensus 45 p~~gm~F~s~~~a~~fy~~ya 65 (771)
=..|+.|.|++||.+|++.-.
T Consensus 87 ~~~GLnF~se~eA~~F~~~v~ 107 (115)
T 1egx_A 87 QVWGLNFGSKEDAAQFAAGMA 107 (115)
T ss_dssp CEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHH
Confidence 478999999999999998654
No 22
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=21.08 E-value=78 Score=27.30 Aligned_cols=29 Identities=24% Similarity=0.166 Sum_probs=23.2
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhcCcEEEEeee
Q 004138 196 PYAGLEFNSANEAYQFYQAYAEKTGFRVRIGQL 228 (771)
Q Consensus 196 p~~Gm~F~S~eea~~fy~~YA~~~GF~vr~~~s 228 (771)
-.+.+.|+|.|+|- +||.+.|....+..-
T Consensus 60 ~qv~L~F~skE~Ai----ayAek~G~~y~V~ep 88 (108)
T 2lju_A 60 QQVCLSFTTRELAI----AYAVAHKIDYTVLQD 88 (108)
T ss_dssp CCSCEEESSHHHHH----HHHHHTTCEEEEECS
T ss_pred ccceEecCCHHHHH----HHHHHcCCEEEEecC
Confidence 44678899999997 679999988876543
Done!