Query 004140
Match_columns 771
No_of_seqs 337 out of 1317
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 18:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 3.8E-57 8.2E-62 508.9 12.5 527 32-696 4-549 (635)
2 TIGR02250 FCP1_euk FCP1-like p 100.0 2.3E-28 4.9E-33 235.5 10.3 102 250-364 52-156 (156)
3 TIGR02251 HIF-SF_euk Dullard-l 99.9 1.2E-22 2.6E-27 195.8 10.2 103 250-360 36-138 (162)
4 PF03031 NIF: NLI interacting 99.9 1.8E-22 4E-27 190.3 8.8 124 250-382 30-153 (159)
5 KOG1605 TFIIF-interacting CTD 99.8 4.5E-22 9.8E-27 206.9 5.1 134 250-394 125-258 (262)
6 TIGR02245 HAD_IIID1 HAD-superf 99.6 4.5E-16 9.7E-21 156.3 10.2 137 253-394 42-190 (195)
7 smart00577 CPDc catalytic doma 99.6 6.6E-16 1.4E-20 146.3 10.6 100 248-362 37-142 (148)
8 PHA02701 ORF020 dsRNA-binding 99.6 2.1E-15 4.4E-20 150.0 10.8 73 620-692 103-177 (183)
9 PHA03103 double-strand RNA-bin 99.5 2.3E-14 5E-19 142.8 10.2 70 622-692 106-177 (183)
10 cd00048 DSRM Double-stranded R 99.5 5.1E-14 1.1E-18 113.8 9.6 65 626-690 1-68 (68)
11 smart00358 DSRM Double-strande 99.5 9.7E-14 2.1E-18 112.7 9.4 64 627-690 1-66 (67)
12 PRK12371 ribonuclease III; Rev 99.5 6.9E-14 1.5E-18 143.7 10.6 68 625-692 161-231 (235)
13 PF00035 dsrm: Double-stranded 99.5 2.8E-13 6.1E-18 110.7 10.8 64 627-690 1-67 (67)
14 COG5190 FCP1 TFIIF-interacting 99.5 3.2E-14 6.9E-19 155.3 5.3 88 248-347 68-158 (390)
15 COG0571 Rnc dsRNA-specific rib 99.4 2.1E-13 4.5E-18 140.7 9.3 69 625-693 161-232 (235)
16 PRK14718 ribonuclease III; Pro 99.4 1E-12 2.2E-17 145.2 10.1 67 625-691 151-221 (467)
17 PRK12372 ribonuclease III; Rev 99.4 2.3E-12 4.9E-17 141.4 10.5 67 625-691 151-221 (413)
18 PRK00102 rnc ribonuclease III; 99.3 1.2E-11 2.6E-16 124.3 10.0 69 624-692 157-228 (229)
19 TIGR02191 RNaseIII ribonucleas 99.2 3.2E-11 7E-16 120.2 9.3 67 624-690 151-220 (220)
20 COG5190 FCP1 TFIIF-interacting 99.1 7.3E-11 1.6E-15 129.4 7.6 120 251-381 247-366 (390)
21 KOG3732 Staufen and related do 99.0 2.5E-09 5.4E-14 114.9 9.9 96 624-723 141-239 (339)
22 KOG3732 Staufen and related do 98.8 1E-08 2.2E-13 110.2 10.0 69 625-694 38-108 (339)
23 KOG2832 TFIIF-interacting CTD 98.7 2.9E-08 6.2E-13 107.9 8.4 155 248-415 206-371 (393)
24 PF14709 DND1_DSRM: double str 98.7 5.6E-08 1.2E-12 85.6 7.2 66 625-690 1-79 (80)
25 KOG1817 Ribonuclease [RNA proc 98.1 9.6E-06 2.1E-10 90.1 8.4 68 625-692 427-503 (533)
26 KOG4334 Uncharacterized conser 97.9 4.7E-06 1E-10 93.4 2.8 71 626-696 376-447 (650)
27 KOG2777 tRNA-specific adenosin 97.8 4.5E-05 9.7E-10 87.2 8.1 68 624-696 89-158 (542)
28 TIGR01685 MDP-1 magnesium-depe 97.7 7.2E-05 1.6E-09 74.6 7.6 102 254-358 43-154 (174)
29 TIGR01489 DKMTPPase-SF 2,3-dik 97.6 0.00046 1E-08 65.8 11.1 41 255-298 71-111 (188)
30 TIGR01488 HAD-SF-IB Haloacid D 97.4 0.00061 1.3E-08 64.7 8.7 46 255-304 72-117 (177)
31 KOG3769 Ribonuclease III domai 97.4 0.0001 2.2E-09 79.2 3.5 71 622-692 229-303 (333)
32 TIGR01509 HAD-SF-IA-v3 haloaci 97.3 0.0011 2.3E-08 62.9 9.1 79 255-344 84-167 (183)
33 PLN02954 phosphoserine phospha 97.3 0.00076 1.6E-08 66.9 8.4 47 255-304 83-130 (224)
34 TIGR01993 Pyr-5-nucltdase pyri 97.3 0.0016 3.5E-08 63.0 9.9 77 255-344 83-168 (184)
35 TIGR03351 PhnX-like phosphonat 97.2 0.00094 2E-08 66.1 7.6 81 255-344 86-173 (220)
36 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.2 0.00074 1.6E-08 65.2 6.7 46 255-304 79-124 (201)
37 TIGR00338 serB phosphoserine p 97.2 0.0019 4.2E-08 63.9 9.7 86 255-344 84-178 (219)
38 TIGR01681 HAD-SF-IIIC HAD-supe 97.2 0.00055 1.2E-08 64.1 5.3 86 256-344 29-118 (128)
39 TIGR02253 CTE7 HAD superfamily 97.1 0.00037 8.1E-09 68.7 3.8 92 254-356 92-190 (221)
40 TIGR01454 AHBA_synth_RP 3-amin 97.1 0.00075 1.6E-08 66.4 5.6 94 254-358 73-172 (205)
41 TIGR01549 HAD-SF-IA-v1 haloaci 97.1 0.0035 7.7E-08 58.6 9.6 75 257-343 65-143 (154)
42 cd01427 HAD_like Haloacid deha 97.0 0.00099 2.1E-08 58.2 5.2 40 255-297 23-62 (139)
43 TIGR01422 phosphonatase phosph 97.0 0.0055 1.2E-07 62.5 11.2 94 255-358 98-198 (253)
44 PLN03243 haloacid dehalogenase 96.9 0.0024 5.2E-08 66.9 7.7 94 255-358 108-206 (260)
45 PRK13226 phosphoglycolate phos 96.9 0.0057 1.2E-07 62.0 10.1 82 254-345 93-179 (229)
46 TIGR01548 HAD-SF-IA-hyp1 haloa 96.9 0.015 3.1E-07 57.3 12.6 78 257-344 107-188 (197)
47 PRK13288 pyrophosphatase PpaX; 96.9 0.01 2.2E-07 58.9 11.2 94 255-358 81-179 (214)
48 PRK13222 phosphoglycolate phos 96.9 0.0099 2.1E-07 58.6 11.0 81 255-345 92-177 (226)
49 PRK11587 putative phosphatase; 96.8 0.0071 1.5E-07 60.5 9.8 92 254-357 81-178 (218)
50 PRK13225 phosphoglycolate phos 96.8 0.0046 1E-07 65.3 8.8 80 255-344 141-222 (273)
51 PLN02575 haloacid dehalogenase 96.7 0.0061 1.3E-07 67.9 9.3 94 255-358 215-313 (381)
52 PRK13582 thrH phosphoserine ph 96.6 0.014 3E-07 57.1 9.8 45 255-304 67-111 (205)
53 TIGR01533 lipo_e_P4 5'-nucleot 96.6 0.014 3E-07 62.2 10.3 78 259-344 121-198 (266)
54 PRK13223 phosphoglycolate phos 96.6 0.0035 7.7E-08 65.6 5.7 80 255-344 100-184 (272)
55 TIGR01428 HAD_type_II 2-haloal 96.5 0.0029 6.3E-08 61.8 4.3 78 256-344 92-175 (198)
56 PRK06698 bifunctional 5'-methy 96.4 0.018 4E-07 64.5 10.9 91 254-357 328-423 (459)
57 PHA02597 30.2 hypothetical pro 96.3 0.013 2.8E-07 57.3 7.6 96 254-358 72-171 (197)
58 TIGR01990 bPGM beta-phosphoglu 96.3 0.021 4.6E-07 54.6 8.8 78 255-344 86-168 (185)
59 TIGR02252 DREG-2 REG-2-like, H 96.3 0.064 1.4E-06 52.5 12.3 79 255-344 104-187 (203)
60 PRK13478 phosphonoacetaldehyde 96.2 0.046 1E-06 56.6 11.6 95 255-358 100-200 (267)
61 COG0546 Gph Predicted phosphat 96.2 0.025 5.4E-07 57.2 9.4 88 255-352 88-181 (220)
62 PRK10563 6-phosphogluconate ph 96.2 0.0021 4.6E-08 63.8 1.6 92 255-358 87-183 (221)
63 COG1011 Predicted hydrolase (H 96.2 0.0035 7.6E-08 61.8 3.0 76 262-345 102-182 (229)
64 COG4996 Predicted phosphatase 96.1 0.02 4.4E-07 56.2 7.7 88 253-352 38-138 (164)
65 PRK09552 mtnX 2-hydroxy-3-keto 96.0 0.037 8E-07 55.7 9.5 39 255-296 73-111 (219)
66 TIGR03333 salvage_mtnX 2-hydro 96.0 0.056 1.2E-06 54.3 10.7 47 255-304 69-115 (214)
67 KOG3109 Haloacid dehalogenase- 96.0 0.036 7.7E-07 58.3 9.2 82 254-345 96-189 (244)
68 PRK08238 hypothetical protein; 95.8 0.038 8.2E-07 63.3 9.6 84 256-358 72-165 (479)
69 PLN02940 riboflavin kinase 95.8 0.021 4.5E-07 63.2 7.2 81 255-345 92-178 (382)
70 PRK09456 ?-D-glucose-1-phospha 95.6 0.038 8.2E-07 54.6 7.5 83 254-345 82-169 (199)
71 TIGR01672 AphA HAD superfamily 95.5 0.14 2.9E-06 53.9 11.6 38 259-299 117-158 (237)
72 TIGR01684 viral_ppase viral ph 95.4 0.031 6.7E-07 60.8 6.7 42 259-304 149-190 (301)
73 TIGR02247 HAD-1A3-hyp Epoxide 95.1 0.052 1.1E-06 53.6 6.5 84 254-345 92-180 (211)
74 COG0637 Predicted phosphatase/ 95.0 0.023 4.9E-07 58.0 3.8 83 255-345 85-170 (221)
75 TIGR01686 FkbH FkbH-like domai 94.8 0.062 1.3E-06 57.7 6.8 80 258-344 33-113 (320)
76 TIGR02137 HSK-PSP phosphoserin 94.7 0.064 1.4E-06 54.5 6.2 44 256-304 68-111 (203)
77 PRK11133 serB phosphoserine ph 94.6 0.21 4.5E-06 54.5 10.3 86 255-344 180-274 (322)
78 PLN02919 haloacid dehalogenase 94.5 0.13 2.9E-06 64.0 9.6 82 257-347 162-248 (1057)
79 PHA02530 pseT polynucleotide k 94.5 0.064 1.4E-06 56.0 5.8 90 257-358 188-293 (300)
80 COG0560 SerB Phosphoserine pho 94.3 0.16 3.4E-06 52.2 8.1 85 255-343 76-169 (212)
81 PHA03398 viral phosphatase sup 94.3 0.15 3.3E-06 55.6 8.3 38 259-299 151-188 (303)
82 PF13419 HAD_2: Haloacid dehal 94.3 0.11 2.3E-06 47.9 6.2 80 254-344 75-160 (176)
83 PF03368 Dicer_dimer: Dicer di 94.0 0.33 7.1E-06 43.8 8.4 62 628-693 2-74 (90)
84 TIGR01664 DNA-3'-Pase DNA 3'-p 93.7 0.22 4.7E-06 49.1 7.5 87 257-356 43-157 (166)
85 PRK11590 hypothetical protein; 93.5 0.15 3.2E-06 51.4 5.9 40 255-297 94-134 (211)
86 PRK11009 aphA acid phosphatase 93.2 0.32 7E-06 51.2 8.1 40 255-297 113-156 (237)
87 PLN02770 haloacid dehalogenase 91.7 0.32 6.8E-06 50.2 5.7 94 255-358 107-205 (248)
88 TIGR01449 PGP_bact 2-phosphogl 91.1 0.53 1.2E-05 46.2 6.5 95 254-358 83-182 (213)
89 PF12689 Acid_PPase: Acid Phos 91.1 1.1 2.4E-05 45.2 8.7 82 253-344 42-134 (169)
90 KOG0323 TFIIF-interacting CTD 90.8 0.58 1.3E-05 55.7 7.3 45 372-430 394-438 (635)
91 PF06888 Put_Phosphatase: Puta 89.9 1.2 2.7E-05 47.0 8.2 40 257-297 72-111 (234)
92 PRK14988 GMP/IMP nucleotidase; 89.5 0.82 1.8E-05 46.7 6.4 81 255-345 92-177 (224)
93 PF00702 Hydrolase: haloacid d 89.4 4.5 9.8E-05 39.2 11.1 81 253-344 124-205 (215)
94 TIGR02254 YjjG/YfnB HAD superf 88.8 0.81 1.8E-05 45.1 5.6 91 254-356 95-193 (224)
95 PF12710 HAD: haloacid dehalog 88.0 1.3 2.8E-05 42.5 6.3 33 266-299 96-129 (192)
96 PLN02779 haloacid dehalogenase 86.7 0.86 1.9E-05 48.5 4.7 96 255-358 143-243 (286)
97 PRK10826 2-deoxyglucose-6-phos 86.6 1.1 2.3E-05 45.0 5.0 93 255-357 91-188 (222)
98 PF06941 NT5C: 5' nucleotidase 86.1 1.5 3.3E-05 43.5 5.8 17 136-152 1-17 (191)
99 TIGR01670 YrbI-phosphatas 3-de 85.4 3.3 7.2E-05 40.1 7.6 73 256-344 30-102 (154)
100 PF11019 DUF2608: Protein of u 85.4 5.4 0.00012 42.3 9.7 73 273-345 95-189 (252)
101 PRK09449 dUMP phosphatase; Pro 85.0 1.7 3.7E-05 43.4 5.5 90 255-356 94-191 (224)
102 TIGR01691 enolase-ppase 2,3-di 85.0 1.8 4E-05 44.9 6.0 85 255-345 94-180 (220)
103 PRK03669 mannosyl-3-phosphogly 84.6 0.9 1.9E-05 47.3 3.6 34 137-171 7-40 (271)
104 PF08282 Hydrolase_3: haloacid 84.0 0.91 2E-05 44.4 3.1 65 140-210 1-66 (254)
105 PF05152 DUF705: Protein of un 83.6 1.7 3.7E-05 47.6 5.1 45 264-316 147-192 (297)
106 smart00559 Ku78 Ku70 and Ku80 83.1 3.2 6.9E-05 40.1 6.4 87 32-122 33-124 (140)
107 TIGR02461 osmo_MPG_phos mannos 82.7 1.4 3.1E-05 45.3 4.1 30 140-171 2-31 (225)
108 TIGR01261 hisB_Nterm histidino 82.6 3.1 6.8E-05 41.0 6.2 80 254-344 27-130 (161)
109 KOG0921 Dosage compensation co 82.0 5.7 0.00012 49.4 9.0 66 626-691 2-69 (1282)
110 PRK09484 3-deoxy-D-manno-octul 81.7 4.2 9.1E-05 40.5 6.8 67 264-344 56-122 (183)
111 TIGR01485 SPP_plant-cyano sucr 81.6 0.98 2.1E-05 46.4 2.4 14 137-150 1-14 (249)
112 cd00594 KU Ku-core domain; inc 81.4 4.7 0.0001 42.2 7.4 90 32-128 86-179 (272)
113 TIGR01662 HAD-SF-IIIA HAD-supe 80.5 4.2 9.1E-05 37.4 5.9 87 255-352 24-123 (132)
114 TIGR01482 SPP-subfamily Sucros 79.3 2.3 5.1E-05 42.2 4.1 30 140-171 1-31 (225)
115 PF14954 LIX1: Limb expression 79.3 3 6.4E-05 44.2 4.9 63 625-689 21-94 (252)
116 PRK10725 fructose-1-P/6-phosph 78.1 1.4 3E-05 42.5 2.1 88 257-356 89-181 (188)
117 KOG2334 tRNA-dihydrouridine sy 77.7 0.74 1.6E-05 52.5 0.1 65 625-691 375-441 (477)
118 TIGR02009 PGMB-YQAB-SF beta-ph 76.6 3.3 7.1E-05 39.7 4.1 78 255-344 87-169 (185)
119 TIGR01656 Histidinol-ppas hist 75.7 7 0.00015 37.3 6.1 40 256-298 27-81 (147)
120 KOG3120 Predicted haloacid deh 75.2 6.3 0.00014 42.2 6.0 38 259-298 87-124 (256)
121 PF03767 Acid_phosphat_B: HAD 74.6 2.5 5.3E-05 44.1 2.9 35 259-296 118-152 (229)
122 PF02735 Ku: Ku70/Ku80 beta-ba 74.5 3.5 7.5E-05 41.5 3.8 87 32-122 80-172 (200)
123 COG0561 Cof Predicted hydrolas 74.4 3.3 7.2E-05 42.6 3.8 32 137-169 3-34 (264)
124 cd00788 KU70 Ku-core domain, K 74.1 9.5 0.00021 40.9 7.2 91 32-128 92-194 (287)
125 TIGR01490 HAD-SF-IB-hyp1 HAD-s 73.7 3.3 7.2E-05 40.5 3.4 47 255-305 86-132 (202)
126 PRK12702 mannosyl-3-phosphogly 71.9 5.6 0.00012 43.9 4.9 66 139-211 3-70 (302)
127 PRK01158 phosphoglycolate phos 71.2 4 8.7E-05 40.8 3.4 32 139-171 5-36 (230)
128 PRK10725 fructose-1-P/6-phosph 71.1 2 4.4E-05 41.4 1.3 14 139-152 7-20 (188)
129 TIGR01663 PNK-3'Pase polynucle 70.6 12 0.00027 43.9 7.7 75 258-344 199-294 (526)
130 TIGR01675 plant-AP plant acid 70.2 2.8 6E-05 44.3 2.1 93 264-364 125-227 (229)
131 TIGR01689 EcbF-BcbF capsule bi 69.6 5 0.00011 38.8 3.5 13 139-151 3-15 (126)
132 TIGR00578 ku70 ATP-dependent D 69.1 12 0.00025 44.5 7.1 87 32-122 316-414 (584)
133 PRK10530 pyridoxal phosphate ( 68.3 5.3 0.00011 40.9 3.6 32 139-171 5-36 (272)
134 PTZ00174 phosphomannomutase; P 68.0 9.3 0.0002 39.6 5.4 33 137-171 5-38 (247)
135 TIGR01493 HAD-SF-IA-v2 Haloaci 67.6 3 6.6E-05 39.8 1.6 73 255-344 89-166 (175)
136 PRK10976 putative hydrolase; P 67.1 5.2 0.00011 41.2 3.3 32 139-171 4-35 (266)
137 TIGR00099 Cof-subfamily Cof su 66.4 5.1 0.00011 41.1 3.1 31 140-171 2-32 (256)
138 PRK15126 thiamin pyrimidine py 66.3 5.4 0.00012 41.3 3.3 32 139-171 4-35 (272)
139 TIGR01493 HAD-SF-IA-v2 Haloaci 65.0 2.8 6.1E-05 40.1 0.8 15 139-153 1-15 (175)
140 PLN02811 hydrolase 64.7 8.4 0.00018 38.8 4.2 92 255-357 77-180 (220)
141 PRK09449 dUMP phosphatase; Pro 63.6 4.1 8.8E-05 40.7 1.7 13 139-151 5-17 (224)
142 TIGR02463 MPGP_rel mannosyl-3- 63.2 6.7 0.00015 39.2 3.2 29 140-169 2-30 (221)
143 PRK06769 hypothetical protein; 62.8 16 0.00035 36.0 5.7 28 256-286 28-55 (173)
144 TIGR02009 PGMB-YQAB-SF beta-ph 61.9 3.9 8.4E-05 39.2 1.2 15 139-153 3-17 (185)
145 TIGR01662 HAD-SF-IIIA HAD-supe 61.8 8.1 0.00018 35.6 3.2 12 139-150 2-13 (132)
146 PRK10513 sugar phosphate phosp 61.7 7.5 0.00016 40.0 3.3 32 139-171 5-36 (270)
147 PLN02770 haloacid dehalogenase 60.8 4.1 8.9E-05 42.1 1.2 15 139-153 24-38 (248)
148 TIGR01544 HAD-SF-IE haloacid d 60.7 13 0.00029 40.4 5.0 47 255-304 120-169 (277)
149 TIGR00213 GmhB_yaeD D,D-heptos 60.5 37 0.00079 33.3 7.7 29 255-286 25-53 (176)
150 PLN02423 phosphomannomutase 60.3 13 0.00029 38.7 4.9 30 137-168 7-37 (245)
151 TIGR01668 YqeG_hyp_ppase HAD s 59.7 13 0.00028 36.6 4.4 84 258-356 45-131 (170)
152 PRK10748 flavin mononucleotide 59.3 7.2 0.00016 40.0 2.7 86 255-357 112-204 (238)
153 PF13419 HAD_2: Haloacid dehal 59.2 4.8 0.0001 37.1 1.3 14 140-153 1-14 (176)
154 TIGR02254 YjjG/YfnB HAD superf 58.0 4.8 0.0001 39.6 1.1 16 139-154 3-18 (224)
155 TIGR01449 PGP_bact 2-phosphogl 57.3 4 8.7E-05 40.1 0.4 13 140-152 1-13 (213)
156 PLN03017 trehalose-phosphatase 57.2 11 0.00024 42.6 3.8 33 117-149 89-123 (366)
157 TIGR01490 HAD-SF-IB-hyp1 HAD-s 56.9 4.3 9.3E-05 39.7 0.6 16 140-155 2-17 (202)
158 cd00873 KU80 Ku-core domain, K 56.7 30 0.00064 37.5 6.9 89 33-128 95-187 (300)
159 PRK14988 GMP/IMP nucleotidase; 55.8 5.7 0.00012 40.6 1.2 14 138-151 11-24 (224)
160 KOG1615 Phosphoserine phosphat 55.8 68 0.0015 34.2 8.9 49 257-308 89-138 (227)
161 KOG3792 Transcription factor N 54.7 10 0.00022 46.1 3.1 62 625-691 506-570 (816)
162 TIGR01487 SPP-like sucrose-pho 54.3 13 0.00027 37.3 3.4 30 139-170 3-33 (215)
163 KOG2777 tRNA-specific adenosin 52.3 7.4 0.00016 45.9 1.6 45 642-692 10-56 (542)
164 PF02169 LPP20: LPP20 lipoprot 52.2 20 0.00042 31.4 3.9 32 664-695 12-43 (92)
165 PLN02779 haloacid dehalogenase 51.8 7.8 0.00017 41.4 1.5 14 139-152 42-55 (286)
166 TIGR01486 HAD-SF-IIB-MPGP mann 51.4 12 0.00027 38.5 2.9 30 140-170 2-31 (256)
167 TIGR02244 HAD-IG-Ncltidse HAD 51.3 21 0.00045 40.1 4.7 43 252-297 180-223 (343)
168 TIGR01484 HAD-SF-IIB HAD-super 51.2 14 0.00031 36.3 3.2 30 140-169 2-31 (204)
169 TIGR01459 HAD-SF-IIA-hyp4 HAD- 51.2 26 0.00056 36.1 5.2 40 257-299 25-66 (242)
170 TIGR01456 CECR5 HAD-superfamil 50.7 13 0.00029 40.2 3.1 29 138-168 1-29 (321)
171 TIGR01680 Veg_Stor_Prot vegeta 50.6 10 0.00022 41.4 2.1 16 135-150 99-114 (275)
172 PLN02151 trehalose-phosphatase 50.6 17 0.00037 40.9 4.0 33 117-149 76-110 (354)
173 PRK10826 2-deoxyglucose-6-phos 50.5 8 0.00017 38.8 1.3 16 138-153 8-23 (222)
174 PRK05446 imidazole glycerol-ph 50.5 49 0.0011 37.3 7.4 28 254-284 28-55 (354)
175 PRK10187 trehalose-6-phosphate 50.2 14 0.0003 39.1 3.1 15 137-151 14-28 (266)
176 PLN02887 hydrolase family prot 49.9 16 0.00035 43.5 3.8 40 131-171 302-341 (580)
177 PRK08942 D,D-heptose 1,7-bisph 49.9 55 0.0012 32.1 6.9 28 256-286 29-56 (181)
178 TIGR01656 Histidinol-ppas hist 49.7 17 0.00036 34.7 3.3 15 139-153 2-16 (147)
179 PRK00192 mannosyl-3-phosphogly 49.3 15 0.00033 38.4 3.2 31 138-169 5-35 (273)
180 COG2179 Predicted hydrolase of 47.9 12 0.00026 38.5 2.0 23 131-153 22-44 (175)
181 TIGR02471 sucr_syn_bact_C sucr 47.1 13 0.00028 37.9 2.2 23 140-164 2-24 (236)
182 TIGR00685 T6PP trehalose-phosp 46.3 22 0.00049 36.7 3.8 17 136-152 2-18 (244)
183 TIGR01457 HAD-SF-IIA-hyp2 HAD- 44.2 18 0.00038 37.8 2.7 31 139-171 3-33 (249)
184 PF05116 S6PP: Sucrose-6F-phos 44.0 23 0.00049 37.2 3.5 13 137-149 2-14 (247)
185 TIGR01458 HAD-SF-IIA-hyp3 HAD- 41.7 21 0.00045 37.5 2.8 89 259-352 123-216 (257)
186 smart00775 LNS2 LNS2 domain. T 41.2 26 0.00056 34.5 3.2 18 139-156 1-18 (157)
187 KOG3792 Transcription factor N 40.7 12 0.00025 45.5 0.8 52 639-691 383-442 (816)
188 COG2503 Predicted secreted aci 40.1 12 0.00027 40.5 0.9 18 135-152 77-94 (274)
189 PLN02382 probable sucrose-phos 39.7 21 0.00045 40.5 2.6 20 132-151 4-23 (413)
190 PRK10748 flavin mononucleotide 38.3 27 0.00058 35.9 2.9 14 139-152 12-25 (238)
191 PF13344 Hydrolase_6: Haloacid 37.0 37 0.00081 31.0 3.3 46 140-187 1-54 (101)
192 PRK10444 UMP phosphatase; Prov 35.2 32 0.00069 36.3 3.0 29 139-169 3-31 (248)
193 TIGR01545 YfhB_g-proteo haloac 35.0 19 0.00042 36.8 1.3 38 255-295 93-131 (210)
194 PF02839 CBM_5_12: Carbohydrat 33.5 29 0.00063 26.7 1.8 22 196-217 9-30 (41)
195 COG3882 FkbH Predicted enzyme 32.7 25 0.00054 41.5 1.8 23 130-152 215-237 (574)
196 PRK14502 bifunctional mannosyl 32.1 42 0.00091 41.0 3.6 35 136-171 415-449 (694)
197 TIGR01452 PGP_euk phosphoglyco 31.6 35 0.00077 36.0 2.6 29 139-169 4-32 (279)
198 PF08645 PNK3P: Polynucleotide 31.2 28 0.0006 34.4 1.6 17 139-155 2-18 (159)
199 KOG2914 Predicted haloacid-hal 31.1 1.9E+02 0.0041 30.8 7.8 79 254-346 90-181 (222)
200 KOG4334 Uncharacterized conser 29.7 1.2E+02 0.0027 36.0 6.5 61 627-691 492-557 (650)
201 KOG0921 Dosage compensation co 27.5 25 0.00053 44.2 0.7 71 621-691 163-239 (1282)
202 cd00789 KU_like Ku-core domain 26.2 1.8E+02 0.0039 31.4 6.7 78 32-122 84-163 (256)
203 cd00036 ChtBD3 Chitin/cellulos 24.1 55 0.0012 25.1 1.8 19 196-214 7-25 (41)
204 TIGR00213 GmhB_yaeD D,D-heptos 23.5 74 0.0016 31.2 3.1 12 139-150 3-14 (176)
205 TIGR01545 YfhB_g-proteo haloac 22.4 1.1E+02 0.0023 31.5 4.0 19 139-157 7-25 (210)
206 PRK08942 D,D-heptose 1,7-bisph 22.2 48 0.0011 32.5 1.5 14 139-152 5-18 (181)
207 PTZ00445 p36-lilke protein; Pr 22.0 1.2E+02 0.0026 32.4 4.4 102 236-345 50-189 (219)
208 PF14657 Integrase_AP2: AP2-li 21.6 1.9E+02 0.004 23.1 4.4 18 670-687 22-39 (46)
209 PF09419 PGP_phosphatase: Mito 21.2 79 0.0017 32.2 2.8 21 134-154 38-58 (168)
210 COG4850 Uncharacterized conser 20.8 1E+02 0.0023 34.9 3.8 46 123-171 147-192 (373)
211 COG0647 NagD Predicted sugar p 20.6 1E+02 0.0022 33.6 3.7 40 137-178 8-54 (269)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=3.8e-57 Score=508.89 Aligned_cols=527 Identities=28% Similarity=0.345 Sum_probs=406.6
Q ss_pred cCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCC-CCchhHHHHHHHhhcccccEEEEeCCeeEEEEecCCCC
Q 004140 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAP-VEQPHLINLHASCFYEFKTAVVVIGDEEIHLVAMPSKQ 110 (771)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~-~~~~~l~~lh~~~~~e~ktaVv~~~~~elhLva~~~~~ 110 (771)
.+..++++.++|...|+|++++++-+++.++++++.+++.. ..+.-+..+++.|..+.++|||..+.++.|+|||.++.
T Consensus 4 ~~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~v~~~~~~ 83 (635)
T KOG0323|consen 4 QPGPEERREAFSIVIERSPDLAELTALASGASDGVLESSDDSLVEKDLESFVAICRSKVEGAVVLLGRDLEKKVALISGV 83 (635)
T ss_pred cCCCcchhhhhhhhhccCcchhhhhhhhhhccccccccccccchhhcccchhheecccccchhhccccchhhhhcccccc
Confidence 34555999999999999999999999999999999998855 44777999999999999999999999999999999887
Q ss_pred CC-CceEeeeecCcchhHhHHHhhhccceEEEEeCCcceeecccccchHHHHHHHHHHhhcCCchhhhhchhHHHHHhhh
Q 004140 111 KK-FPCFWCYSVSSGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIAREPDQIRASGMSAELKRYMD 189 (771)
Q Consensus 111 ~~-~p~F~~~~~~~g~y~~~~~lL~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~~dP~~~~~~~~E~kr~~~ 189 (771)
-. .+|+|+|.|..|+|+.|..+|+.+|...++||++|++.+++|..+.++|.++..||.+.. |+++++
T Consensus 84 ~~~~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------L~lv~D 152 (635)
T KOG0323|consen 84 SSSTSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKK-----------LHLVLD 152 (635)
T ss_pred ccccCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhc-----------ceeehh
Confidence 55 599999999999999999999999999999999999999999999999999999997766 677888
Q ss_pred hHHHHHhhhccceeeeCCeEEEecccccCCCCCCccccccceeecCCCcceeeccCCCCCCceEEEEecCChHHHHHHHH
Q 004140 190 DRTLLKQYTENDCVMDNGKVFKVQQEEVPPPSENHERIVRPVIRIPERNLVLTRINPENRDTSVLVRLRPAWEDLRSYLI 269 (771)
Q Consensus 190 D~~lL~q~~~~d~V~~nG~~~~~q~e~v~~~~d~~~~~~RpviRl~~~n~~ltrInP~~r~~~y~VKLRPgweeLreFL~ 269 (771)
+...|.+|+..+.+..+++-++.+.+.+ ..|..++||||..+.++|||||||+ +.+||+
T Consensus 153 ld~tllh~~~~~~l~e~~~~l~~~~~~~------------------~sn~dl~~~~~~~~~~~~~vKlRP~---~~efL~ 211 (635)
T KOG0323|consen 153 LDHTLLHTILKSDLSETEKYLKEEAESV------------------ESNKDLFRFNPLGHDTEYLVKLRPF---VHEFLK 211 (635)
T ss_pred hhhHHHHhhccchhhhhhhhcccccccc------------------cccccceeecccCCCceEEEEeCcc---HHHHHH
Confidence 8889999999999999888877766655 3578899999999999999999999 778998
Q ss_pred HhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-C--cccHhhhcccCCCCCCeEEEEeCCccc
Q 004140 270 AKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-S--RKSLLNVFQRGLCHPKMAMVIDDRCKV 346 (771)
Q Consensus 270 a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~--~KsL~rLf~~g~~d~~~VVIIDDR~dV 346 (771)
+++++|||||||||+|.||+.||++|||+|+||+ +||+||+.+ . .++|..+|+ |+++||||||||.+|
T Consensus 212 -~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~-----dRIisrde~~~~kt~dL~~~~p---~g~smvvIIDDr~dV 282 (635)
T KOG0323|consen 212 -EANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFG-----DRIISRDESPFFKTLDLVLLFP---CGDSMVVIIDDRSDV 282 (635)
T ss_pred -HHHhhceeEEEeccchHHHHHHHHHhCCCCcccc-----ceEEEecCCCcccccccccCCC---CCCccEEEEeCcccc
Confidence 8999999999999999999999999999999999 999999664 3 556666666 899999999999999
Q ss_pred cccCCCCCeEEecccCCCCCchhhhhcccchHHHHHHHhhhcchhhhhhhhHHHHHhhhhhhcccccCCCCCCCCccccc
Q 004140 347 WEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVARNVACNVRGCFFKEFDENLLRSISEVFYEDEAVNLPAAPDVSNYL 426 (771)
Q Consensus 347 W~~~~~NlI~VVp~Y~py~~~q~E~~~~~p~L~~~~~VL~~Vh~~fFk~~De~l~~ri~e~~~e~~~~~~~~~pdv~n~l 426 (771)
|+++++|+|.|. +|.|| ..+++.+-. |.++.+.+++|.+++.||+++|+.+..+|.++-|+++-.+.|..+++
T Consensus 283 W~~~~~nLI~i~-~y~yF-~~~gd~nap-~~~~~~~~~~~~~~~~~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~---- 355 (635)
T KOG0323|consen 283 WPDHKRNLIQIA-PYPYF-SGQGDINAP-PPLHVLRNVACSVRGAFFKEFDPSLKSRISEVRYEDDDESNPTSYSV---- 355 (635)
T ss_pred ccCCCcceEEee-eeecc-cCcccccCC-cccccccchhcccccccccccCcccccccccccccccccccCccccc----
Confidence 999998788764 56544 455544322 78999999999999999999999999999999999999999999998
Q ss_pred cccCCccCCCCCCCCCCCCCcchhHHHHhhcccCccccccCCCCCccCCCCccccCCCCceeeccCCCCCCccCCCCCCC
Q 004140 427 MSEDANFAPNGSTNAPMSEGLNGLEVERRLNQSDEKYVVDSGLPSMKNSSDLKSETSLLPVAVASNATVPATVVPSQKPG 506 (771)
Q Consensus 427 ~~e~~~~~~~~n~~~~~~~gm~~~everrl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 506 (771)
.+++|.+++.+|||.+. . |+- | . |..
T Consensus 356 -------~~~~~~~p~~~~~~~~~--------~--------------------~~~---------~----~---~~~--- 381 (635)
T KOG0323|consen 356 -------ELSANPGPLKQDGMDEF--------V--------------------PEE---------N----A---PEA--- 381 (635)
T ss_pred -------ccccccCcccccccccc--------c--------------------ccc---------c----c---hhh---
Confidence 57888889999999987 0 000 0 0 111
Q ss_pred CCCCccccCCcccccCcccCCCCCCCCCCCccCCCCCeeeeccccccCCCCCCcccCCCCCCCCCccccch----hhhhh
Q 004140 507 LLGAPIRRDNSSMKHGFDLRNQNSAQPPLPKLHGQGGWIVEEEVNRVLPNNRPVSIATGLPSHASQAKGEE----AIMAH 582 (771)
Q Consensus 507 ~~~~p~~~~~~~~~hg~d~~~~~~~~~p~p~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 582 (771)
+.-++++.-++.... +++|- + -..+..+.|+.||...+ ....-
T Consensus 382 ----------~~~s~~~~~~de~~~---------------D~~L~-----~---~~kvl~~vH~~ff~~~~~~~e~~~~~ 428 (635)
T KOG0323|consen 382 ----------RSGSYREKKSDESDE---------------DGELA-----N---LLKVLKPVHKGFFAKYDEVEETLESP 428 (635)
T ss_pred ----------ccccccccccccccc---------------chhHH-----H---HhhhhcccchhhhhccccccccccCC
Confidence 011222222332210 01100 0 01245566888888643 22222
Q ss_pred hhcccCCCCCCCCCcccccccccCCCCccccccCccc----------cCCCCCChHHHHHHHHHhCCCCceEEEEeeeCC
Q 004140 583 DLHKQNLPPASQPPEIGVSQNHVSSNSREFLTEGGKT----------NLLPSYLSIGVLQEIGKRCSSKVEFRSVVSTSK 652 (771)
Q Consensus 583 ~~~~~~~~~~~~~~e~~~~~n~~~~~~~s~~~e~g~~----------~~~ps~DyKS~LQE~aQK~~~~peYeiv~~sGH 652 (771)
|. ++.+| +....+-....++++...+.+...+..- ...+ .-..-.++.++.+++....|+-......
T Consensus 429 Dv-r~~i~-~~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~-~~~~~~th~i~~~~gt~k~~~a~~~~~~ 505 (635)
T KOG0323|consen 429 DV-RLLIP-ELRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAP-DVSDKTTHLIAANAGTKKVYKAVVSGSA 505 (635)
T ss_pred Ch-hhhhh-hhhhHHhhccceeecccccCcCCcchhhhhhhhhcccceecc-cccchhhhHHhhccCcceeeccccccce
Confidence 22 22222 2223333444566666555543322210 0011 1223346777777776666666432223
Q ss_pred CceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHHhhcc
Q 004140 653 DLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKYVA 696 (771)
Q Consensus 653 ~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~kyl~ 696 (771)
.-+|...+|-..+++|.|.++.++.+-..+|....+.+...|..
T Consensus 506 ~Vv~~~wl~~~~e~w~~v~ek~~~l~~~~~~~~~~~~~a~~~~~ 549 (635)
T KOG0323|consen 506 KVVNAAWLWRSLEKWGKVEEKLEPLDDDQRAAIRRESLARLYEQ 549 (635)
T ss_pred eEechhHHHHHHHHhcchhcccccccccccchhcccchhhhhhh
Confidence 34566666677889999999999999999998888888776663
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.95 E-value=2.3e-28 Score=235.53 Aligned_cols=102 Identities=32% Similarity=0.607 Sum_probs=90.2
Q ss_pred CceEEEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC---CCcccHhhh
Q 004140 250 DTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS---GSRKSLLNV 326 (771)
Q Consensus 250 ~~~y~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres---g~~KsL~rL 326 (771)
.+.+++++||| +.+||+ +++++||++|||++.+.||..|++.|||++.+|+ +||+++++ ...|+|+++
T Consensus 52 ~~~~~v~~rPg---v~efL~-~l~~~yel~I~T~~~~~yA~~vl~~ldp~~~~F~-----~ri~~rd~~~~~~~KdL~~i 122 (156)
T TIGR02250 52 TMWYLTKLRPF---LHEFLK-EASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFG-----DRIISRDESGSPHTKSLLRL 122 (156)
T ss_pred CeEEEEEECCC---HHHHHH-HHHhhcEEEEEeCCcHHHHHHHHHHhCcCCCeec-----cEEEEeccCCCCccccHHHH
Confidence 56899999999 778998 8899999999999999999999999999999998 67777755 248999999
Q ss_pred cccCCCCCCeEEEEeCCccccccCCCCCeEEecccCCC
Q 004140 327 FQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPY 364 (771)
Q Consensus 327 f~~g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~py 364 (771)
++ ++.++||||||+++||..++.|+|+| ++|.||
T Consensus 123 ~~---~d~~~vvivDd~~~~~~~~~~N~i~i-~~~~~f 156 (156)
T TIGR02250 123 FP---ADESMVVIIDDREDVWPWHKRNLIQI-EPYNYF 156 (156)
T ss_pred cC---CCcccEEEEeCCHHHhhcCccCEEEe-CCcccC
Confidence 97 48999999999999999999988876 456554
No 3
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.88 E-value=1.2e-22 Score=195.82 Aligned_cols=103 Identities=19% Similarity=0.236 Sum_probs=87.8
Q ss_pred CceEEEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhccc
Q 004140 250 DTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQR 329 (771)
Q Consensus 250 ~~~y~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~KsL~rLf~~ 329 (771)
...+||++||| +.+||+ +++++|||+|||+|++.||..|++.|||.+.+|..+.+++.+...+....|+|+.+..
T Consensus 36 ~~~~~v~~RPg---l~eFL~-~l~~~yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~- 110 (162)
T TIGR02251 36 IIPVYVFKRPH---VDEFLE-RVSKWYELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGKYVKDLSLVGK- 110 (162)
T ss_pred EEEEEEEECCC---HHHHHH-HHHhcCEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCCEEeEchhcCC-
Confidence 44799999999 788998 7889999999999999999999999999999999776655554433335899998765
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEecc
Q 004140 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVVPA 360 (771)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~ 360 (771)
+++.+|||||++..|..++.|+|.++++
T Consensus 111 ---~~~~vIiVDD~~~~~~~~~~NgI~i~~f 138 (162)
T TIGR02251 111 ---DLSKVIIIDNSPYSYSLQPDNAIPIKSW 138 (162)
T ss_pred ---ChhhEEEEeCChhhhccCccCEeecCCC
Confidence 6899999999999999999989886553
No 4
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.87 E-value=1.8e-22 Score=190.35 Aligned_cols=124 Identities=25% Similarity=0.353 Sum_probs=85.5
Q ss_pred CceEEEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhccc
Q 004140 250 DTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQR 329 (771)
Q Consensus 250 ~~~y~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~KsL~rLf~~ 329 (771)
.+.++|++||| +.+||+ .+++.|||+|||+|++.||..|++.|||++.+|..+.+++++...+++..|+|+.+..
T Consensus 30 ~~~~~v~~RP~---l~~FL~-~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~~~~~~KdL~~l~~- 104 (159)
T PF03031_consen 30 RGGYYVKLRPG---LDEFLE-ELSKHYEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFDKGSYIKDLSKLGR- 104 (159)
T ss_dssp EEEEEEEE-TT---HHHHHH-HHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEETTEEE--GGGSSS-
T ss_pred ccceeEeeCch---HHHHHH-HHHHhceEEEEEeehhhhhhHHHHhhhhhccccccccccccccccccccccchHHHhh-
Confidence 45789999999 888998 7899999999999999999999999999999998766666554444334799998854
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEecccCCCCCchhhhhcccchHHHHH
Q 004140 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVAR 382 (771)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~py~~~q~E~~~~~p~L~~~~ 382 (771)
+.+.+|||||++.+|..++.|.|. |++|.+....+.+.....++|..+.
T Consensus 105 ---~~~~vvivDD~~~~~~~~~~N~i~-v~~f~~~~~~D~~L~~l~~~L~~l~ 153 (159)
T PF03031_consen 105 ---DLDNVVIVDDSPRKWALQPDNGIP-VPPFFGDTPNDRELLRLLPFLEELA 153 (159)
T ss_dssp ----GGGEEEEES-GGGGTTSGGGEEE-----SSCHTT--HHHHHHHHHHHHH
T ss_pred ---ccccEEEEeCCHHHeeccCCceEE-eccccCCCcchhHHHHHHHHHHHhC
Confidence 689999999999999999886665 5666433212233344444453333
No 5
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.85 E-value=4.5e-22 Score=206.90 Aligned_cols=134 Identities=19% Similarity=0.259 Sum_probs=117.7
Q ss_pred CceEEEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhccc
Q 004140 250 DTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQR 329 (771)
Q Consensus 250 ~~~y~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~KsL~rLf~~ 329 (771)
...+||+.||| +.+||. +++++||+.|||++...||..|+++|||++++|.+|.+|+.|++.+.+..|+|..+..
T Consensus 125 ~~~~yV~kRP~---vdeFL~-~~s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~g~yvKdls~~~~- 199 (262)
T KOG1605|consen 125 IHQVYVRKRPH---VDEFLS-RVSKWYELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLKDGNYVKDLSVLGR- 199 (262)
T ss_pred ceEEEEEcCCC---HHHHHH-HhHHHHHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeECCcEEEEcceecc-
Confidence 34699999999 899999 9999999999999999999999999999999999999988887777777999976655
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEecccCCCCCchhhhhcccchHHHHHHHhhhcchhhhh
Q 004140 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVARNVACNVRGCFFK 394 (771)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~py~~~q~E~~~~~p~L~~~~~VL~~Vh~~fFk 394 (771)
+.+.|+||||.+..+..|++|.|+|.+||. ...+.|+.+..|+|+.+..+ .+||...-+
T Consensus 200 ---dL~~viIiDNsP~sy~~~p~NgIpI~sw~~--d~~D~eLL~LlpfLe~L~~~-~Dvr~~l~~ 258 (262)
T KOG1605|consen 200 ---DLSKVIIVDNSPQSYRLQPENGIPIKSWFD--DPTDTELLKLLPFLEALAFV-DDVRPILAR 258 (262)
T ss_pred ---CcccEEEEcCChHHhccCccCCCccccccc--CCChHHHHHHHHHHHHhccc-ccHHHHHHH
Confidence 799999999999999999999999988772 33467778899999988877 888776544
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.65 E-value=4.5e-16 Score=156.29 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=91.7
Q ss_pred EEEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCC-ccccccccCceEe-----ecCC--CcccHh
Q 004140 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGH-LIGSKQLLDRVVC-----VKSG--SRKSLL 324 (771)
Q Consensus 253 y~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~-lF~~r~l~~RIis-----resg--~~KsL~ 324 (771)
+++..||| |.+||+ .++++|||+|||++...||+.+++.|++.+. .|.-+.+.+++.+ ...| ..|+|+
T Consensus 42 ~~~~kRP~---l~eFL~-~~~~~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~ 117 (195)
T TIGR02245 42 GEELMRPY---LHEFLT-SAYEDYDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLG 117 (195)
T ss_pred ceEEeCCC---HHHHHH-HHHhCCEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEeecH
Confidence 36789999 899999 8999999999999999999999999876432 1221122233311 1223 389999
Q ss_pred hhcccC--CCCCCeEEEEeCCccccccCCCCCeEEecccCC-CCC-chhhhhcccchHHHHHHHhhhcchhhhh
Q 004140 325 NVFQRG--LCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTP-YYA-PQAETANAVPVLCVARNVACNVRGCFFK 394 (771)
Q Consensus 325 rLf~~g--~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~p-y~~-~q~E~~~~~p~L~~~~~VL~~Vh~~fFk 394 (771)
.++..- ..+.+.+|||||.+.....+|+|+|++.|++.- ... .+.|+....+.|..+.. ..+|+..-.+
T Consensus 118 ~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~~~~~~~~D~eL~~L~~yL~~la~-~~Dvr~~~~~ 190 (195)
T TIGR02245 118 VIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKKAHANRGTDQELLKLTQYLKTIAE-LEDFSSLDHK 190 (195)
T ss_pred HhhhhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccccCCCCcccHHHHHHHHHHHHHhc-Ccccchhhhc
Confidence 986521 126789999999999999999999987653310 011 23444445555555554 3555554433
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.64 E-value=6.6e-16 Score=146.28 Aligned_cols=100 Identities=23% Similarity=0.279 Sum_probs=79.4
Q ss_pred CCCceEEEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC------Ccc
Q 004140 248 NRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG------SRK 321 (771)
Q Consensus 248 ~r~~~y~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg------~~K 321 (771)
.+...+++++||| +.+||+ .+.+.|++.|||++.+.||..+++.||+...+|. +|+++++. ..|
T Consensus 37 ~~~~~~~v~l~pG---~~e~L~-~L~~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~------~i~~~~d~~~~KP~~~k 106 (148)
T smart00577 37 GHPHGVYVKKRPG---VDEFLK-RASELFELVVFTAGLRMYADPVLDLLDPKKYFGY------RRLFRDECVFVKGKYVK 106 (148)
T ss_pred CceEEEEEEECCC---HHHHHH-HHHhccEEEEEeCCcHHHHHHHHHHhCcCCCEee------eEEECccccccCCeEee
Confidence 3456799999999 666666 5667899999999999999999999999764444 66666443 256
Q ss_pred cHhhhcccCCCCCCeEEEEeCCccccccCCCCCeEEecccC
Q 004140 322 SLLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFT 362 (771)
Q Consensus 322 sL~rLf~~g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~ 362 (771)
.|+++. ++++.+|+|||++..|..+++|.|.+ ++|.
T Consensus 107 ~l~~l~----~~p~~~i~i~Ds~~~~~aa~~ngI~i-~~f~ 142 (148)
T smart00577 107 DLSLLG----RDLSNVIIIDDSPDSWPFHPENLIPI-KPWF 142 (148)
T ss_pred cHHHcC----CChhcEEEEECCHHHhhcCccCEEEe-cCcC
Confidence 677663 37999999999999999999888876 4554
No 8
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.61 E-value=2.1e-15 Score=149.96 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=65.9
Q ss_pred cCCCCCChHHHHHHHHHhCCCCceEEEEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Q 004140 620 NLLPSYLSIGVLQEIGKRCSSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692 (771)
Q Consensus 620 ~~~ps~DyKS~LQE~aQK~~~~peYeiv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~ 692 (771)
......||||.||||+|+++..+.|+++.++| |.+.|+++|+|+|..+|+|.|+|||+|||+||+.||+.|..
T Consensus 103 ~~~k~~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 103 MRLKTLNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred hcCCCCCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 34456799999999999995544999998888 99999999999999999999999999999999999999854
No 9
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.54 E-value=2.3e-14 Score=142.85 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=61.8
Q ss_pred CCCCChHHHHHHHHHhCCCCceEEEEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Q 004140 622 LPSYLSIGVLQEIGKRCSSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692 (771)
Q Consensus 622 ~ps~DyKS~LQE~aQK~~~~peYeiv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~ 692 (771)
+-..||||.||||||+++... |..+.+.| |.+.|+++|+|+|+.+|+|.|+|||+|||+||+.||..|..
T Consensus 106 ~K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 106 WKDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred cccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 345699999999999995555 55666677 99999999999999999999999999999999999999854
No 10
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.53 E-value=5.1e-14 Score=113.83 Aligned_cols=65 Identities=34% Similarity=0.464 Sum_probs=60.4
Q ss_pred ChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHH
Q 004140 626 LSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYL 690 (771)
Q Consensus 626 DyKS~LQE~aQK~-~~~peYeiv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L 690 (771)
|||+.|+||||++ +..|.|+++...| |.+.|++.|.|+|..+++|.|+|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 6899999999999 8899999977666 889999999999999999999999999999999999865
No 11
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.50 E-value=9.7e-14 Score=112.69 Aligned_cols=64 Identities=34% Similarity=0.479 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhCCCCceEEEEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHH
Q 004140 627 SIGVLQEIGKRCSSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYL 690 (771)
Q Consensus 627 yKS~LQE~aQK~~~~peYeiv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L 690 (771)
||+.|+||||+++..|.|+++...| |.+.|+++|.|+|+.+++|.|+|||+||++||+.||..|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 5899999999996699999987666 889999999999999999999999999999999999876
No 12
>PRK12371 ribonuclease III; Reviewed
Probab=99.50 E-value=6.9e-14 Score=143.66 Aligned_cols=68 Identities=26% Similarity=0.255 Sum_probs=63.8
Q ss_pred CChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Q 004140 625 YLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692 (771)
Q Consensus 625 ~DyKS~LQE~aQK~-~~~peYeiv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~ 692 (771)
.|||+.||||||++ +..|.|+++..+| |.+.|+|+|+|+|+.+|+|.|+|||+|||+||+.||++|..
T Consensus 161 ~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 161 RDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 59999999999998 7789999998877 99999999999999999999999999999999999999853
No 13
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.48 E-value=2.8e-13 Score=110.67 Aligned_cols=64 Identities=27% Similarity=0.376 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhCCCCceEEEEeeeC--CC-ceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHH
Q 004140 627 SIGVLQEIGKRCSSKVEFRSVVSTS--KD-LQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYL 690 (771)
Q Consensus 627 yKS~LQE~aQK~~~~peYeiv~~sG--H~-~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L 690 (771)
||+.|+||||+.+..|.|..+...+ |. +.|.++|.|+|..++.|.|+|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 7999999999998888888766554 44 8999999999999999999999999999999999987
No 14
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.47 E-value=3.2e-14 Score=155.32 Aligned_cols=88 Identities=35% Similarity=0.632 Sum_probs=81.2
Q ss_pred CCCceEEEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-C--CcccHh
Q 004140 248 NRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-G--SRKSLL 324 (771)
Q Consensus 248 ~r~~~y~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g--~~KsL~ 324 (771)
...|.|++|.||. +..|+. .++++||+++||||++.||..+++++||.|++|+ +|+..++. + ..|++.
T Consensus 68 ~~~~~~~~k~~~~---l~~~~~-~i~~~~e~~~~~~~~~~~~~~~~~i~d~~g~~~~-----d~~~~~~~~~~~~~~s~~ 138 (390)
T COG5190 68 QEKCAYYVKARPK---LFPFLT-KISPLYELHIYTMGTRAYAERIAKIIDPTGKLFN-----DRILSRDESGSLSQKSLS 138 (390)
T ss_pred cccccceeeeccc---ccchhh-hhchhcceeeEeeccccchhhhhhcccccccccc-----cccccccccccchhhhhh
Confidence 4578999999999 999998 8999999999999999999999999999999999 88888743 3 389999
Q ss_pred hhcccCCCCCCeEEEEeCCcccc
Q 004140 325 NVFQRGLCHPKMAMVIDDRCKVW 347 (771)
Q Consensus 325 rLf~~g~~d~~~VVIIDDR~dVW 347 (771)
++|+ ++.+++||+||+.++|
T Consensus 139 ~l~p---~~~n~~vi~~d~~~~~ 158 (390)
T COG5190 139 RLFP---KDQNMVVIIDDRGDVW 158 (390)
T ss_pred hcCc---cccccccccccccccC
Confidence 9999 5899999999999999
No 15
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.45 E-value=2.1e-13 Score=140.73 Aligned_cols=69 Identities=36% Similarity=0.454 Sum_probs=65.8
Q ss_pred CChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHHh
Q 004140 625 YLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEK 693 (771)
Q Consensus 625 ~DyKS~LQE~aQK~-~~~peYeiv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~k 693 (771)
+|||+.||||+|+. ...|.|+++..+| |++.|+++|.++|+.+|+|.|+|||+|||.||+.||+.|...
T Consensus 161 ~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 161 KDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred cChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence 69999999999999 7889999999888 999999999999999999999999999999999999998654
No 16
>PRK14718 ribonuclease III; Provisional
Probab=99.39 E-value=1e-12 Score=145.22 Aligned_cols=67 Identities=25% Similarity=0.235 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCE-EEEEEeeCCHHHHHHHHHHHHHHHHH
Q 004140 625 YLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGE-KIGVGMGKTRKDAQQQAAENALHYLA 691 (771)
Q Consensus 625 ~DyKS~LQE~aQK~-~~~peYeiv~~sG--H~~~FtVeV~I~Ge-k~G~G~GkSKKEAEQ~AAK~ALe~L~ 691 (771)
.|||+.||||||++ +..|+|+++.+.| |.+.|+|+|+|+|. .+|+|.|+|||+|||.||+.||++|.
T Consensus 151 kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~ 221 (467)
T PRK14718 151 KDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVT 221 (467)
T ss_pred cCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 59999999999999 6779999998888 99999999999995 55899999999999999999999997
No 17
>PRK12372 ribonuclease III; Reviewed
Probab=99.36 E-value=2.3e-12 Score=141.41 Aligned_cols=67 Identities=25% Similarity=0.230 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCE-EEEEEeeCCHHHHHHHHHHHHHHHHH
Q 004140 625 YLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGE-KIGVGMGKTRKDAQQQAAENALHYLA 691 (771)
Q Consensus 625 ~DyKS~LQE~aQK~-~~~peYeiv~~sG--H~~~FtVeV~I~Ge-k~G~G~GkSKKEAEQ~AAK~ALe~L~ 691 (771)
.|||+.||||||++ ...|+|+++.+.| |++.|+|+|+|+|. .+|+|.|+|||+|||+||+.||++|.
T Consensus 151 ~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~ 221 (413)
T PRK12372 151 KDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVM 221 (413)
T ss_pred CCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 58999999999999 6789999998888 99999999999985 56899999999999999999999997
No 18
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.28 E-value=1.2e-11 Score=124.26 Aligned_cols=69 Identities=33% Similarity=0.408 Sum_probs=63.5
Q ss_pred CCChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Q 004140 624 SYLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692 (771)
Q Consensus 624 s~DyKS~LQE~aQK~-~~~peYeiv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~ 692 (771)
..|||+.||||||++ ...|+|+++..+| |.+.|+++|+++|+.+|+|.|+|||+||++||+.||+.|+.
T Consensus 157 ~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 157 VKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred cCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 359999999999998 5679999987777 88999999999999999999999999999999999999864
No 19
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.22 E-value=3.2e-11 Score=120.18 Aligned_cols=67 Identities=36% Similarity=0.435 Sum_probs=61.7
Q ss_pred CCChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHH
Q 004140 624 SYLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYL 690 (771)
Q Consensus 624 s~DyKS~LQE~aQK~-~~~peYeiv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L 690 (771)
..|||+.||||||++ +..|+|+++...| |.+.|++.|.++|+.+|+|.|+|||+||++||+.||++|
T Consensus 151 ~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 151 LKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred cCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 469999999999998 5679999987767 889999999999999999999999999999999999875
No 20
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.13 E-value=7.3e-11 Score=129.35 Aligned_cols=120 Identities=19% Similarity=0.196 Sum_probs=98.0
Q ss_pred ceEEEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhcccC
Q 004140 251 TSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRG 330 (771)
Q Consensus 251 ~~y~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~KsL~rLf~~g 330 (771)
+.+||..||+ +..||. .+++.|++++||.+.+.||+.|+++||+.+ .|.++.|+.+++..+....|+|..+..
T Consensus 247 ~~~~v~kRp~---l~~fl~-~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lfr~sc~~~~G~~ikDis~i~r-- 319 (390)
T COG5190 247 HLVYVSKRPE---LDYFLG-KLSKIHELVYFTASVKRYADPVLDILDSDK-VFSHRLFRESCVSYLGVYIKDISKIGR-- 319 (390)
T ss_pred eEEEEcCChH---HHHHHh-hhhhhEEEEEEecchhhhcchHHHhccccc-eeehhhhcccceeccCchhhhHHhhcc--
Confidence 5699999999 888998 899999999999999999999999999998 899998888776555445899998876
Q ss_pred CCCCCeEEEEeCCccccccCCCCCeEEecccCCCCCchhhhhcccchHHHH
Q 004140 331 LCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQAETANAVPVLCVA 381 (771)
Q Consensus 331 ~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~py~~~q~E~~~~~p~L~~~ 381 (771)
+...++|||+++..|..+++|.|.+-+|+. ..-.++..+..++|..+
T Consensus 320 --~l~~viiId~~p~SY~~~p~~~i~i~~W~~--d~~d~el~~ll~~le~L 366 (390)
T COG5190 320 --SLDKVIIIDNSPASYEFHPENAIPIEKWIS--DEHDDELLNLLPFLEDL 366 (390)
T ss_pred --CCCceEEeeCChhhhhhCccceeccCcccc--cccchhhhhhccccccc
Confidence 689999999999999999998887656551 11234445555555443
No 21
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=98.95 E-value=2.5e-09 Score=114.88 Aligned_cols=96 Identities=22% Similarity=0.184 Sum_probs=73.4
Q ss_pred CCChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHHhhccccCC
Q 004140 624 SYLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKYVAYITP 700 (771)
Q Consensus 624 s~DyKS~LQE~aQK~-~~~peYeiv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~kyl~~~~p 700 (771)
..|++++||||||++ +..|+|+++.+.| |.+.|+++|.+.+. ..+|.|.|||.|+++||++.|+.|.-.-... .|
T Consensus 141 ~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~-~~~GkG~sKKiAKRnAAeamLe~l~~~~~~~-~p 218 (339)
T KOG3732|consen 141 VLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENF-TEEGKGPSKKIAKRNAAEAMLESLGFVKPNK-TP 218 (339)
T ss_pred ccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecce-eeecCCchHHHHHHHHHHHHHHHhccCCCCc-Cc
Confidence 469999999999999 8899999999998 99999999999885 5699999999999999999999985332211 11
Q ss_pred CCCCCCcCCccccccccCCcccc
Q 004140 701 RSGAMDRDFDKLSLENENGFLWD 723 (771)
Q Consensus 701 ~~g~~~~d~~k~~~~~~Ngf~~~ 723 (771)
.. ...+..+......+|.+|.
T Consensus 219 ~~--~~~~~~~p~~~~~~~~~~~ 239 (339)
T KOG3732|consen 219 EN--LKVSLLKPASGRALGCSDK 239 (339)
T ss_pred cc--ccccccccccCcCCccCcc
Confidence 11 2223333344555666655
No 22
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=98.84 E-value=1e-08 Score=110.24 Aligned_cols=69 Identities=28% Similarity=0.274 Sum_probs=64.2
Q ss_pred CChHHHHHHHHHhCCCCceEEEEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHHhh
Q 004140 625 YLSIGVLQEIGKRCSSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKY 694 (771)
Q Consensus 625 ~DyKS~LQE~aQK~~~~peYeiv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~ky 694 (771)
+.+++.||||+.+.+..|.|+++.+.| |.+.|++.|.++ +..++|.|+|||.||+.||.++|..|+..-
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg-~~~a~GeG~sKK~AKh~AA~~~L~~lk~l~ 108 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVG-EITATGEGKSKKLAKHRAAEALLKELKKLP 108 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEe-eeEEecCCCchhHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999888 999999999996 677899999999999999999999997644
No 23
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=98.71 E-value=2.9e-08 Score=107.90 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=116.7
Q ss_pred CCCceEEEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhc
Q 004140 248 NRDTSVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVF 327 (771)
Q Consensus 248 ~r~~~y~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~KsL~rLf 327 (771)
...|.+-++.||| +.-||. .+++.|||.|||...-.||.-+++-|||. .++.+++++++....++-..|||+.|=
T Consensus 206 s~~tGwRf~kRPg---vD~FL~-~~a~~yEIVi~sse~gmt~~pl~d~lDP~-g~IsYkLfr~~t~y~~G~HvKdls~LN 280 (393)
T KOG2832|consen 206 SYKTGWRFKKRPG---VDYFLG-HLAKYYEIVVYSSEQGMTVFPLLDALDPK-GYISYKLFRGATKYEEGHHVKDLSKLN 280 (393)
T ss_pred hhhcCceeccCch---HHHHHH-hhcccceEEEEecCCccchhhhHhhcCCc-ceEEEEEecCcccccCccchhhhhhhc
Confidence 4457789999999 888998 89999999999999999999999999999 577888887775554444599999887
Q ss_pred ccCCCCCCeEEEEeCCccccccCCCCCeEEecccCCCCCchh-hhhcccchHHHH-HHHhhhcc--h-------hhhhhh
Q 004140 328 QRGLCHPKMAMVIDDRCKVWEDKDQPRVHVVPAFTPYYAPQA-ETANAVPVLCVA-RNVACNVR--G-------CFFKEF 396 (771)
Q Consensus 328 ~~g~~d~~~VVIIDDR~dVW~~~~~NlI~VVp~Y~py~~~q~-E~~~~~p~L~~~-~~VL~~Vh--~-------~fFk~~ 396 (771)
+ |++.||+||=.......++.|-|.+.| +. ...++ .+..+.++|..+ ++-+++|| - .+-++|
T Consensus 281 R----dl~kVivVd~d~~~~~l~P~N~l~l~~-W~--Gn~dDt~L~dL~~FL~~ia~~~~eDvR~vL~~y~~~~D~~~~F 353 (393)
T KOG2832|consen 281 R----DLQKVIVVDFDANSYKLQPENMLPLEP-WS--GNDDDTSLFDLLAFLEYIAQQQVEDVRPVLQSYSQEKDPAKEF 353 (393)
T ss_pred c----ccceeEEEEccccccccCcccccccCc-CC--CCcccchhhhHHHHHHHHHHccHHHHHHHHHHhccccCHHHHH
Confidence 6 799999999999999999998776543 31 23344 335566777654 55667777 2 334455
Q ss_pred hHHHHHhhhhhhcccccCC
Q 004140 397 DENLLRSISEVFYEDEAVN 415 (771)
Q Consensus 397 De~l~~ri~e~~~e~~~~~ 415 (771)
++. -+++.|.-|+-+++-
T Consensus 354 ~~r-qk~l~eq~~~~~~~~ 371 (393)
T KOG2832|consen 354 RDR-QKKLQEQQYESELNE 371 (393)
T ss_pred HHH-HHHHHHHHHHHHhcc
Confidence 544 245566667666554
No 24
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=98.66 E-value=5.6e-08 Score=85.56 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHhC-CCCceEEEEeeeC--CCceEEEEEEECCEEEE---------EEee-CCHHHHHHHHHHHHHHHH
Q 004140 625 YLSIGVLQEIGKRC-SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIG---------VGMG-KTRKDAQQQAAENALHYL 690 (771)
Q Consensus 625 ~DyKS~LQE~aQK~-~~~peYeiv~~sG--H~~~FtVeV~I~Gek~G---------~G~G-kSKKEAEQ~AAK~ALe~L 690 (771)
++.++.|+|+|+|+ +..|.|++....| |.+.|++.|.|.+..+. -+.+ .+||+|+..||+.||..|
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 36789999999999 8999999987777 99999999999987662 1233 699999999999999887
No 25
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.07 E-value=9.6e-06 Score=90.11 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=60.7
Q ss_pred CChHHHHHHHHHhC-------CCCceEEEEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Q 004140 625 YLSIGVLQEIGKRC-------SSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692 (771)
Q Consensus 625 ~DyKS~LQE~aQK~-------~~~peYeiv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~ 692 (771)
-|+|+.||.+|-.. ...|.|.++...| +.+.|+|.|+++|+.+|+|.|++.|.|+..||++||+.+..
T Consensus 427 ndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 427 NDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred cCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHh
Confidence 48999999999875 1347788887777 99999999999999999999999999999999999999874
No 26
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=97.93 E-value=4.7e-06 Score=93.38 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHhC-CCCceEEEEeeeCCCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHHhhcc
Q 004140 626 LSIGVLQEIGKRC-SSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKYVA 696 (771)
Q Consensus 626 DyKS~LQE~aQK~-~~~peYeiv~~sGH~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~kyl~ 696 (771)
.....|.||+|.+ ...|.|++-+.......|...|.+++..||+|.|.|||.|+-.||+.+|+.|...+..
T Consensus 376 s~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~ 447 (650)
T KOG4334|consen 376 SKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRV 447 (650)
T ss_pred eeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchhhh
Confidence 4578999999999 7889999876666888999999999999999999999999999999999999866553
No 27
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=97.81 E-value=4.5e-05 Score=87.24 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=61.3
Q ss_pred CCChHHHHHHHHHhCCCCceEEEEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHHhhcc
Q 004140 624 SYLSIGVLQEIGKRCSSKVEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAEKYVA 696 (771)
Q Consensus 624 s~DyKS~LQE~aQK~~~~peYeiv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~kyl~ 696 (771)
..|+.+.|.|+++ .+.|..+...| |.+.|.+.|.|+|+.+-.| |+|||+|+++||+.||+.|...-..
T Consensus 89 ~~npv~ll~e~~~----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~~~ 158 (542)
T KOG2777|consen 89 GKNPVSLLHELAN----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKIDEN 158 (542)
T ss_pred cCCchHHHHHHhc----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhccCC
Confidence 4699999999988 68899988887 9999999999999999777 9999999999999999999765544
No 28
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.75 E-value=7.2e-05 Score=74.59 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=68.3
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCC-chHHHHHHHHhhCCC--CCccccccccCceEeecCCC-cccHhhhccc
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMA-ERDYALEMWRLLDPE--GHLIGSKQLLDRVVCVKSGS-RKSLLNVFQR 329 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmg-tR~YA~~Il~LLDPd--g~lF~~r~l~~RIisresg~-~KsL~rLf~~ 329 (771)
-++++|++.++.++|+ ++-+.+.|.|++ .+.|+..+++.++-+ |+-+..-.+++.++|.+... .|....++..
T Consensus 43 ~~~l~pGv~elL~~Lk---~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~ 119 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLK---DAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQK 119 (174)
T ss_pred EEEEcccHHHHHHHHH---HCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHH
Confidence 4678899777777776 478999999988 999999999988743 43333223445666664432 3433222221
Q ss_pred ----C--CCCCCeEEEEeCCccccccCCCCCeEEe
Q 004140 330 ----G--LCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (771)
Q Consensus 330 ----g--~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (771)
. ...++.+++|||++.-.....+.++.++
T Consensus 120 ~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i 154 (174)
T TIGR01685 120 VNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSC 154 (174)
T ss_pred hhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEE
Confidence 1 2578999999999876655555566654
No 29
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.65 E-value=0.00046 Score=65.75 Aligned_cols=41 Identities=5% Similarity=0.192 Sum_probs=33.3
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCC
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDP 298 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDP 298 (771)
++++|+..+++++|+ ...+.++|.|++.+.++..+++.++-
T Consensus 71 ~~l~~g~~~ll~~l~---~~g~~~~i~S~~~~~~~~~~l~~~~l 111 (188)
T TIGR01489 71 APIDPGFKEFIAFIK---EHGIDFIVISDGNDFFIDPVLEGIGE 111 (188)
T ss_pred CCCCccHHHHHHHHH---HcCCcEEEEeCCcHHHHHHHHHHcCC
Confidence 578899777777775 45699999999999999999987653
No 30
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.43 E-value=0.00061 Score=64.65 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=35.3
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIG 304 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~ 304 (771)
++++|++.++.+.|+ ..-+.++|.|++.+.|+..+++.+.-+ .+|+
T Consensus 72 ~~~~~g~~~~l~~l~---~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~ 117 (177)
T TIGR01488 72 VALRPGARELISWLK---ERGIDTVIVSGGFDFFVEPVAEKLGID-DVFA 117 (177)
T ss_pred CCcCcCHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCc-hhee
Confidence 346799666666665 456899999999999999999987544 4555
No 31
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0001 Score=79.15 Aligned_cols=71 Identities=24% Similarity=0.255 Sum_probs=64.9
Q ss_pred CCCCChHHHHHHHHHhC-CCCceEEEEeeeC---CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Q 004140 622 LPSYLSIGVLQEIGKRC-SSKVEFRSVVSTS---KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692 (771)
Q Consensus 622 ~ps~DyKS~LQE~aQK~-~~~peYeiv~~sG---H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~ 692 (771)
++-.++...|-++|++. ...|+|+++.++| ..+.|.|-++-+.+.+|+|.|.|-|.||+.||..||.+|..
T Consensus 229 ~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~ 303 (333)
T KOG3769|consen 229 WQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYD 303 (333)
T ss_pred ccccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHc
Confidence 45568999999999999 6789999999888 78899999999999999999999999999999999988754
No 32
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.34 E-value=0.0011 Score=62.88 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=47.7
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEee-cCCCcc----cHhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCV-KSGSRK----SLLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisr-esg~~K----sL~rLf~~ 329 (771)
+++.|++.++.+.|+ .+-|.++|+|++.+.+ ..++..++-.. +| +.+++. +.+..| -+..++..
T Consensus 84 ~~~~~g~~~~l~~l~---~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f------~~i~~~~~~~~~KP~~~~~~~~~~~ 152 (183)
T TIGR01509 84 LKPLPGVEPLLEALR---ARGKKLALLTNSPRDH-AVLVQELGLRD-LF------DVVIFSGDVGRGKPDPDIYLLALKK 152 (183)
T ss_pred CccCcCHHHHHHHHH---HCCCeEEEEeCCchHH-HHHHHhcCCHH-HC------CEEEEcCCCCCCCCCHHHHHHHHHH
Confidence 678899444444443 3468999999999999 55554344332 23 355543 223323 23333332
Q ss_pred CCCCCCeEEEEeCCc
Q 004140 330 GLCHPKMAMVIDDRC 344 (771)
Q Consensus 330 g~~d~~~VVIIDDR~ 344 (771)
-+.+++.+|+|||+.
T Consensus 153 ~~~~~~~~~~vgD~~ 167 (183)
T TIGR01509 153 LGLKPEECLFVDDSP 167 (183)
T ss_pred cCCCcceEEEEcCCH
Confidence 235789999999986
No 33
>PLN02954 phosphoserine phosphatase
Probab=97.33 E-value=0.00076 Score=66.95 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=37.6
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCC-Cccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEG-HLIG 304 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg-~lF~ 304 (771)
.+++|++.++.++|+ .+.+.++|.|.+.+.++..+++.++-+. .+|.
T Consensus 83 ~~l~pg~~e~l~~l~---~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~ 130 (224)
T PLN02954 83 PRLSPGIPELVKKLR---ARGTDVYLVSGGFRQMIAPVAAILGIPPENIFA 130 (224)
T ss_pred CCCCccHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHhCCChhhEEE
Confidence 357899888888886 4678999999999999999999876442 4564
No 34
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.29 E-value=0.0016 Score=63.04 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=51.1
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-C----ccc----Hhh
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-S----RKS----LLN 325 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~----~Ks----L~r 325 (771)
+++.|+ +.++|+ ++. +.++|.|++.+.++..+++.++-. .+| +.|+|.++. . .|- +..
T Consensus 83 ~~~~~g---~~~~L~-~L~--~~~~i~Tn~~~~~~~~~l~~~gl~-~~f------d~i~~~~~~~~~~~~~KP~p~~~~~ 149 (184)
T TIGR01993 83 LKPDPE---LRNLLL-RLP--GRKIIFTNGDRAHARRALNRLGIE-DCF------DGIFCFDTANPDYLLPKPSPQAYEK 149 (184)
T ss_pred CCCCHH---HHHHHH-hCC--CCEEEEeCCCHHHHHHHHHHcCcH-hhh------CeEEEeecccCccCCCCCCHHHHHH
Confidence 455677 777887 554 689999999999999999887533 244 467766432 1 132 233
Q ss_pred hcccCCCCCCeEEEEeCCc
Q 004140 326 VFQRGLCHPKMAMVIDDRC 344 (771)
Q Consensus 326 Lf~~g~~d~~~VVIIDDR~ 344 (771)
++..-+..++.+++|||+.
T Consensus 150 ~~~~~~~~~~~~l~vgD~~ 168 (184)
T TIGR01993 150 ALREAGVDPERAIFFDDSA 168 (184)
T ss_pred HHHHhCCCccceEEEeCCH
Confidence 3322235788899999985
No 35
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.21 E-value=0.00094 Score=66.12 Aligned_cols=81 Identities=20% Similarity=0.160 Sum_probs=54.8
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCC-CCccccccccCceEeecC-CCcc----cHhhhcc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPE-GHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQ 328 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPd-g~lF~~r~l~~RIisres-g~~K----sL~rLf~ 328 (771)
+++.||..++++.|+ .+.|.+.|.|++.+.++..+++.++-. +.+|. .++|.++ +..| -+..++.
T Consensus 86 ~~l~~G~~~~L~~L~---~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~------~i~~~~~~~~~KP~p~~~~~a~~ 156 (220)
T TIGR03351 86 PVALPGAEEAFRSLR---SSGIKVALTTGFDRDTAERLLEKLGWTVGDDVD------AVVCPSDVAAGRPAPDLILRAME 156 (220)
T ss_pred CccCCCHHHHHHHHH---HCCCEEEEEeCCchHHHHHHHHHhhhhhhccCC------EEEcCCcCCCCCCCHHHHHHHHH
Confidence 478899666666664 467999999999999999999987654 25555 5666644 2222 1333333
Q ss_pred cCCCC-CCeEEEEeCCc
Q 004140 329 RGLCH-PKMAMVIDDRC 344 (771)
Q Consensus 329 ~g~~d-~~~VVIIDDR~ 344 (771)
..++. ++.+|+|+|+.
T Consensus 157 ~~~~~~~~~~~~igD~~ 173 (220)
T TIGR03351 157 LTGVQDVQSVAVAGDTP 173 (220)
T ss_pred HcCCCChhHeEEeCCCH
Confidence 22244 58899999985
No 36
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.21 E-value=0.00074 Score=65.17 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=36.9
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIG 304 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~ 304 (771)
++++|++.++.++|+ .+-+.++|.|++.+.++..+++.+.-+ .+|.
T Consensus 79 ~~~~~g~~e~l~~l~---~~g~~~~IvS~~~~~~~~~~l~~~g~~-~~~~ 124 (201)
T TIGR01491 79 ISLRDYAEELVRWLK---EKGLKTAIVSGGIMCLAKKVAEKLNPD-YVYS 124 (201)
T ss_pred CCCCccHHHHHHHHH---HCCCEEEEEeCCcHHHHHHHHHHhCCC-eEEE
Confidence 368899777777775 467999999999999999999987754 3444
No 37
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.21 E-value=0.0019 Score=63.89 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=51.2
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCcccccccc-CceEe-ecCC-------CcccHhh
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLL-DRVVC-VKSG-------SRKSLLN 325 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~-~RIis-resg-------~~KsL~r 325 (771)
++++|++.++.+.|+ .+.+.++|.|+|.+.++..+++.+.-.. +|...... +.+++ ...+ ..+-+..
T Consensus 84 ~~~~~g~~~~l~~l~---~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 159 (219)
T TIGR00338 84 LPLTEGAEELVKTLK---EKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLEVEDGKLTGLVEGPIVDASYKGKTLLI 159 (219)
T ss_pred CCcCCCHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEEEECCEEEEEecCcccCCcccHHHHHH
Confidence 468899666666664 3569999999999999999999866443 55532111 11111 1111 1112333
Q ss_pred hcccCCCCCCeEEEEeCCc
Q 004140 326 VFQRGLCHPKMAMVIDDRC 344 (771)
Q Consensus 326 Lf~~g~~d~~~VVIIDDR~ 344 (771)
++.....+++.++.|+|+.
T Consensus 160 ~~~~~~~~~~~~i~iGDs~ 178 (219)
T TIGR00338 160 LLRKEGISPENTVAVGDGA 178 (219)
T ss_pred HHHHcCCCHHHEEEEECCH
Confidence 3332234677889999873
No 38
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.19 E-value=0.00055 Score=64.08 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=51.7
Q ss_pred EecCChHHHHHHHHHhccCcEEEEEEeCC-chHHHHHHHHhhCCCCCccccccccCceEeecC-CCcccHhhhcccCC--
Q 004140 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMA-ERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKSLLNVFQRGL-- 331 (771)
Q Consensus 256 KLRPgweeLreFL~a~~sk~FElyVyTmg-tR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~KsL~rLf~~g~-- 331 (771)
++.|+..++.+.|+ ++-+.+.|.|++ .+.|+..+++.+.+.+.+..-..+++.++|-+. ...+-+..+...-+
T Consensus 29 ~~~~gv~e~L~~Lk---~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~ 105 (128)
T TIGR01681 29 VTIKEIRDKLQTLK---KNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGV 105 (128)
T ss_pred HHHHHHHHHHHHHH---HCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCC
Confidence 45588666777775 467999999999 999999999987642222100112234433322 11222222222222
Q ss_pred CCCCeEEEEeCCc
Q 004140 332 CHPKMAMVIDDRC 344 (771)
Q Consensus 332 ~d~~~VVIIDDR~ 344 (771)
+.++.+++|||+.
T Consensus 106 ~~p~~~l~igDs~ 118 (128)
T TIGR01681 106 LKPKSILFVDDRP 118 (128)
T ss_pred CCcceEEEECCCH
Confidence 5789999999985
No 39
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.13 E-value=0.00037 Score=68.67 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=58.4
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCccc----Hhhhcc
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKS----LLNVFQ 328 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~Ks----L~rLf~ 328 (771)
++++.|++.+++++|+ .+.+-+.|.|++.+.++...++.++-+ .+| +.|+|.++ +..|. +..++.
T Consensus 92 ~~~~~~g~~~~L~~L~---~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~f------~~i~~~~~~~~~KP~~~~~~~~~~ 161 (221)
T TIGR02253 92 YLRVYPGVRDTLMELR---ESGYRLGIITDGLPVKQWEKLERLGVR-DFF------DAVITSEEEGVEKPHPKIFYAALK 161 (221)
T ss_pred hCCCCCCHHHHHHHHH---HCCCEEEEEeCCchHHHHHHHHhCChH-Hhc------cEEEEeccCCCCCCCHHHHHHHHH
Confidence 4678999666666664 345899999999999999888877643 234 45666533 32221 222222
Q ss_pred cCCCCCCeEEEEeCCc--cccccCCCCCeE
Q 004140 329 RGLCHPKMAMVIDDRC--KVWEDKDQPRVH 356 (771)
Q Consensus 329 ~g~~d~~~VVIIDDR~--dVW~~~~~NlI~ 356 (771)
.-+.+++.+|+|+|+. |+=..... ++.
T Consensus 162 ~~~~~~~~~~~igDs~~~di~~A~~a-G~~ 190 (221)
T TIGR02253 162 RLGVKPEEAVMVGDRLDKDIKGAKNL-GMK 190 (221)
T ss_pred HcCCChhhEEEECCChHHHHHHHHHC-CCE
Confidence 2224678899999985 55554444 443
No 40
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.10 E-value=0.00075 Score=66.36 Aligned_cols=94 Identities=15% Similarity=0.084 Sum_probs=60.2
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Ccc----cHhhhcc
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK----SLLNVFQ 328 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~~K----sL~rLf~ 328 (771)
.+++.|+..+++++|+ .+.+.+.|+|++.+.++..+++.++-.+ +|. .+++.++. ..| -+..+..
T Consensus 73 ~~~~~~g~~~~L~~L~---~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~------~i~~~~~~~~~KP~~~~~~~~~~ 142 (205)
T TIGR01454 73 EVEVFPGVPELLAELR---ADGVGTAIATGKSGPRARSLLEALGLLP-LFD------HVIGSDEVPRPKPAPDIVREALR 142 (205)
T ss_pred ccccCCCHHHHHHHHH---HCCCeEEEEeCCchHHHHHHHHHcCChh-hee------eEEecCcCCCCCCChHHHHHHHH
Confidence 3577899777777775 4579999999999999999998876543 333 45555432 112 2333333
Q ss_pred cCCCCCCeEEEEeCCcc-ccccCCCCCeEEe
Q 004140 329 RGLCHPKMAMVIDDRCK-VWEDKDQPRVHVV 358 (771)
Q Consensus 329 ~g~~d~~~VVIIDDR~d-VW~~~~~NlI~VV 358 (771)
.-+++++.+++|+|+.. +-..+.. ++.++
T Consensus 143 ~~~~~~~~~l~igD~~~Di~aA~~~-Gi~~i 172 (205)
T TIGR01454 143 LLDVPPEDAVMVGDAVTDLASARAA-GTATV 172 (205)
T ss_pred HcCCChhheEEEcCCHHHHHHHHHc-CCeEE
Confidence 22356888999999853 4444433 55433
No 41
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.07 E-value=0.0035 Score=58.57 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=49.2
Q ss_pred ecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcc----cHhhhcccCCC
Q 004140 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRK----SLLNVFQRGLC 332 (771)
Q Consensus 257 LRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~K----sL~rLf~~g~~ 332 (771)
..|++.++.++|+ .+.+.++|.|++.+.++..+++.+ -..+| ..|++.++...| -+..++..-++
T Consensus 65 ~~~g~~e~l~~L~---~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f------~~i~~~~~~~~Kp~~~~~~~~~~~~~~ 133 (154)
T TIGR01549 65 YIRGAADLLKRLK---EAGIKLGIISNGSLRAQKLLLRKH--LGDYF------DLILGSDEFGAKPEPEIFLAALESLGL 133 (154)
T ss_pred eccCHHHHHHHHH---HCcCeEEEEeCCchHHHHHHHHHH--HHhcC------cEEEecCCCCCCcCHHHHHHHHHHcCC
Confidence 3489777777775 457899999999999999999974 22334 356665432222 23333332224
Q ss_pred CCCeEEEEeCC
Q 004140 333 HPKMAMVIDDR 343 (771)
Q Consensus 333 d~~~VVIIDDR 343 (771)
.+ .+++|+|+
T Consensus 134 ~~-~~l~iGDs 143 (154)
T TIGR01549 134 PP-EVLHVGDN 143 (154)
T ss_pred CC-CEEEEeCC
Confidence 56 78999998
No 42
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.04 E-value=0.00099 Score=58.25 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=29.2
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhC
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLD 297 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLD 297 (771)
++++|++.++.+.|+ ...+.++|+|++.+.++..+++.+.
T Consensus 23 ~~~~~~~~~~l~~l~---~~g~~i~ivS~~~~~~~~~~~~~~~ 62 (139)
T cd01427 23 LELYPGVKEALKELK---EKGIKLALATNKSRREVLELLEELG 62 (139)
T ss_pred CCcCcCHHHHHHHHH---HCCCeEEEEeCchHHHHHHHHHHcC
Confidence 345688444444443 2359999999999999999998765
No 43
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.02 E-value=0.0055 Score=62.48 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=59.5
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Ccc----cHhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK----SLLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~~K----sL~rLf~~ 329 (771)
+++.||+.+++++|+ .+.+.+.|.|++.+.++..+++.++-.+ +|- +.|+|.++. ..| -+...+..
T Consensus 98 ~~~~pg~~e~L~~L~---~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~-----d~ii~~~~~~~~KP~p~~~~~a~~~ 168 (253)
T TIGR01422 98 SSPIPGVIEVIAYLR---ARGIKIGSTTGYTREMMDVVAPEAALQG-YRP-----DYNVTTDDVPAGRPAPWMALKNAIE 168 (253)
T ss_pred CccCCCHHHHHHHHH---HCCCeEEEECCCcHHHHHHHHHHHHhcC-CCC-----ceEEccccCCCCCCCHHHHHHHHHH
Confidence 567799777777776 4579999999999999999999876543 221 466666442 222 12222222
Q ss_pred CCC-CCCeEEEEeCCc-cccccCCCCCeEEe
Q 004140 330 GLC-HPKMAMVIDDRC-KVWEDKDQPRVHVV 358 (771)
Q Consensus 330 g~~-d~~~VVIIDDR~-dVW~~~~~NlI~VV 358 (771)
-++ +++.+|+|+|+. |+-..+.. ++.+|
T Consensus 169 l~~~~~~~~l~IGDs~~Di~aA~~a-Gi~~i 198 (253)
T TIGR01422 169 LGVYDVAACVKVGDTVPDIEEGRNA-GMWTV 198 (253)
T ss_pred cCCCCchheEEECCcHHHHHHHHHC-CCeEE
Confidence 123 377899999985 34444443 55443
No 44
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=96.92 E-value=0.0024 Score=66.86 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=58.3
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Cccc----Hhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRKS----LLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~~Ks----L~rLf~~ 329 (771)
+++.||+.++++.|+ ...|-+.|.|++.+.++..+++.++=.. +| +.|++.++. ..|- +..+...
T Consensus 108 ~~l~pg~~e~L~~L~---~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~F------d~ii~~~d~~~~KP~Pe~~~~a~~~ 177 (260)
T PLN03243 108 YRLRPGSREFVQALK---KHEIPIAVASTRPRRYLERAIEAVGMEG-FF------SVVLAAEDVYRGKPDPEMFMYAAER 177 (260)
T ss_pred cccCCCHHHHHHHHH---HCCCEEEEEeCcCHHHHHHHHHHcCCHh-hC------cEEEecccCCCCCCCHHHHHHHHHH
Confidence 567899666666665 4579999999999999999999875321 33 456665432 1221 1122221
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEe
Q 004140 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (771)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (771)
-++.++.+|+|+|+..=-....+.++.++
T Consensus 178 l~~~p~~~l~IgDs~~Di~aA~~aG~~~i 206 (260)
T PLN03243 178 LGFIPERCIVFGNSNSSVEAAHDGCMKCV 206 (260)
T ss_pred hCCChHHeEEEcCCHHHHHHHHHcCCEEE
Confidence 12578889999998542222233355544
No 45
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.91 E-value=0.0057 Score=61.95 Aligned_cols=82 Identities=17% Similarity=0.022 Sum_probs=54.1
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhcc
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQ 328 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~K----sL~rLf~ 328 (771)
.+++.|++.++.+.|+ ...+-+.|.|++.+.++..+++.++-.. +| +.+++.++ +..| -+..+..
T Consensus 93 ~~~~~pg~~~~L~~L~---~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f------~~i~~~~~~~~~KP~p~~~~~~~~ 162 (229)
T PRK13226 93 QSQLFDGVEGMLQRLE---CAGCVWGIVTNKPEYLARLILPQLGWEQ-RC------AVLIGGDTLAERKPHPLPLLVAAE 162 (229)
T ss_pred cCeeCCCHHHHHHHHH---HCCCeEEEECCCCHHHHHHHHHHcCchh-cc------cEEEecCcCCCCCCCHHHHHHHHH
Confidence 4678899777777775 4568999999999999999888765322 23 34555443 2222 1333332
Q ss_pred cCCCCCCeEEEEeCCcc
Q 004140 329 RGLCHPKMAMVIDDRCK 345 (771)
Q Consensus 329 ~g~~d~~~VVIIDDR~d 345 (771)
.-+.+++.+++|+|+..
T Consensus 163 ~l~~~p~~~l~IGDs~~ 179 (229)
T PRK13226 163 RIGVAPTDCVYVGDDER 179 (229)
T ss_pred HhCCChhhEEEeCCCHH
Confidence 22247889999999964
No 46
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=96.90 E-value=0.015 Score=57.28 Aligned_cols=78 Identities=17% Similarity=0.011 Sum_probs=51.6
Q ss_pred ecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcc----cHhhhcccCCC
Q 004140 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRK----SLLNVFQRGLC 332 (771)
Q Consensus 257 LRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~K----sL~rLf~~g~~ 332 (771)
..|+..++++.|+ .+-+.+.|.|++.+.++..+++.+.=. .+| +.+++.++...| .+..++..-++
T Consensus 107 ~~~~~~~~L~~l~---~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f------~~~~~~~~~~~KP~p~~~~~~~~~~~~ 176 (197)
T TIGR01548 107 TLLTPKGLLRELH---RAPKGMAVVTGRPRKDAAKFLTTHGLE-ILF------PVQIWMEDCPPKPNPEPLILAAKALGV 176 (197)
T ss_pred cccCHHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHcCch-hhC------CEEEeecCCCCCcCHHHHHHHHHHhCc
Confidence 4566566777775 356999999999999999999986543 334 356665442112 12223332235
Q ss_pred CCCeEEEEeCCc
Q 004140 333 HPKMAMVIDDRC 344 (771)
Q Consensus 333 d~~~VVIIDDR~ 344 (771)
+++.+|+|+|+.
T Consensus 177 ~~~~~i~vGD~~ 188 (197)
T TIGR01548 177 EACHAAMVGDTV 188 (197)
T ss_pred CcccEEEEeCCH
Confidence 788999999985
No 47
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=96.86 E-value=0.01 Score=58.90 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=59.5
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Ccc----cHhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK----SLLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~~K----sL~rLf~~ 329 (771)
+++.||..++.++|+ .+.+.+.|.|++.+.++..+++.++=. .+| +.|++.++. ..| .+.++...
T Consensus 81 ~~~~~g~~~~l~~L~---~~g~~~~i~S~~~~~~~~~~l~~~gl~-~~f------~~i~~~~~~~~~Kp~p~~~~~~~~~ 150 (214)
T PRK13288 81 VTEYETVYETLKTLK---KQGYKLGIVTTKMRDTVEMGLKLTGLD-EFF------DVVITLDDVEHAKPDPEPVLKALEL 150 (214)
T ss_pred cccCcCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCCh-hce------eEEEecCcCCCCCCCcHHHHHHHHH
Confidence 567899766666665 356899999999999999999987643 234 356655432 112 23333332
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEe
Q 004140 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (771)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (771)
-+..++.+++|+|+..=.....+.++..+
T Consensus 151 ~~~~~~~~~~iGDs~~Di~aa~~aG~~~i 179 (214)
T PRK13288 151 LGAKPEEALMVGDNHHDILAGKNAGTKTA 179 (214)
T ss_pred cCCCHHHEEEECCCHHHHHHHHHCCCeEE
Confidence 22467889999999643333333355443
No 48
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=96.86 E-value=0.0099 Score=58.63 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=52.6
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Ccc----cHhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK----SLLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~~K----sL~rLf~~ 329 (771)
++++|+..++.+.|+ ...+.+.|+|++.+.++..+++.++-. .+| +.+++.++. ..| -+..++..
T Consensus 92 ~~~~~g~~~~l~~l~---~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f------~~~~~~~~~~~~kp~~~~~~~~~~~ 161 (226)
T PRK13222 92 SRLYPGVKETLAALK---AAGYPLAVVTNKPTPFVAPLLEALGIA-DYF------SVVIGGDSLPNKKPDPAPLLLACEK 161 (226)
T ss_pred CccCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCCc-cCc------cEEEcCCCCCCCCcChHHHHHHHHH
Confidence 567899666555554 357999999999999999999987643 233 345554331 122 13333332
Q ss_pred CCCCCCeEEEEeCCcc
Q 004140 330 GLCHPKMAMVIDDRCK 345 (771)
Q Consensus 330 g~~d~~~VVIIDDR~d 345 (771)
-...++.+++|+|+..
T Consensus 162 ~~~~~~~~i~igD~~~ 177 (226)
T PRK13222 162 LGLDPEEMLFVGDSRN 177 (226)
T ss_pred cCCChhheEEECCCHH
Confidence 2246789999999953
No 49
>PRK11587 putative phosphatase; Provisional
Probab=96.81 E-value=0.0071 Score=60.47 Aligned_cols=92 Identities=16% Similarity=0.021 Sum_probs=55.0
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhcc
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQ 328 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~K----sL~rLf~ 328 (771)
.+++.||..+++++|+ .+.+.+.|.|++.+.++..+++.+.- .+| +-++|.++ +..| -+.....
T Consensus 81 ~~~~~pg~~e~L~~L~---~~g~~~~ivTn~~~~~~~~~l~~~~l--~~~------~~i~~~~~~~~~KP~p~~~~~~~~ 149 (218)
T PRK11587 81 GITALPGAIALLNHLN---KLGIPWAIVTSGSVPVASARHKAAGL--PAP------EVFVTAERVKRGKPEPDAYLLGAQ 149 (218)
T ss_pred CceeCcCHHHHHHHHH---HcCCcEEEEcCCCchHHHHHHHhcCC--CCc------cEEEEHHHhcCCCCCcHHHHHHHH
Confidence 4578899777777775 46799999999999988777765432 122 23555432 1112 1222222
Q ss_pred cCCCCCCeEEEEeCCcc-ccccCCCCCeEE
Q 004140 329 RGLCHPKMAMVIDDRCK-VWEDKDQPRVHV 357 (771)
Q Consensus 329 ~g~~d~~~VVIIDDR~d-VW~~~~~NlI~V 357 (771)
.-++.++.+|+|+|+.. +-..... ++..
T Consensus 150 ~~g~~p~~~l~igDs~~di~aA~~a-G~~~ 178 (218)
T PRK11587 150 LLGLAPQECVVVEDAPAGVLSGLAA-GCHV 178 (218)
T ss_pred HcCCCcccEEEEecchhhhHHHHHC-CCEE
Confidence 12256889999999863 3333333 4443
No 50
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=96.81 E-value=0.0046 Score=65.31 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=52.7
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcc--cHhhhcccCCC
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRK--SLLNVFQRGLC 332 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~K--sL~rLf~~g~~ 332 (771)
+++-|++.++.++|+ .+.+.+.|.|++.+.++..+++.++-. .+|. .|++.+....| .+..++..-..
T Consensus 141 ~~l~pg~~e~L~~L~---~~gi~laIvSn~~~~~~~~~L~~~gl~-~~F~------~vi~~~~~~~k~~~~~~~l~~~~~ 210 (273)
T PRK13225 141 LQLFPGVADLLAQLR---SRSLCLGILSSNSRQNIEAFLQRQGLR-SLFS------VVQAGTPILSKRRALSQLVAREGW 210 (273)
T ss_pred CCcCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCCh-hheE------EEEecCCCCCCHHHHHHHHHHhCc
Confidence 456799777777775 467899999999999999999987643 3443 34444332111 22322221124
Q ss_pred CCCeEEEEeCCc
Q 004140 333 HPKMAMVIDDRC 344 (771)
Q Consensus 333 d~~~VVIIDDR~ 344 (771)
.++.+|+|+|+.
T Consensus 211 ~p~~~l~IGDs~ 222 (273)
T PRK13225 211 QPAAVMYVGDET 222 (273)
T ss_pred ChhHEEEECCCH
Confidence 578899999985
No 51
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=96.72 E-value=0.0061 Score=67.91 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=61.1
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCC-ccc----Hhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGS-RKS----LLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~-~Ks----L~rLf~~ 329 (771)
+.+.||..+++++|+ ...+.+.|.|++.+.++..+++.++=. .|| +.|++.++.. .|- +......
T Consensus 215 ~~l~pGa~ElL~~Lk---~~GiklaIaSn~~~~~~~~~L~~lgL~-~yF------d~Iv~sddv~~~KP~Peifl~A~~~ 284 (381)
T PLN02575 215 YRLRTGSQEFVNVLM---NYKIPMALVSTRPRKTLENAIGSIGIR-GFF------SVIVAAEDVYRGKPDPEMFIYAAQL 284 (381)
T ss_pred CCcCcCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCCH-HHc------eEEEecCcCCCCCCCHHHHHHHHHH
Confidence 456799888888886 467999999999999999999986543 234 4677775532 221 1112221
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEe
Q 004140 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (771)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (771)
-+..++.+|+|+|+..=-....+.++.+|
T Consensus 285 lgl~Peecl~IGDS~~DIeAAk~AGm~~I 313 (381)
T PLN02575 285 LNFIPERCIVFGNSNQTVEAAHDARMKCV 313 (381)
T ss_pred cCCCcccEEEEcCCHHHHHHHHHcCCEEE
Confidence 12478889999998653333333355543
No 52
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.58 E-value=0.014 Score=57.12 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=34.0
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIG 304 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~ 304 (771)
+++.||+.++.++|+ +. +.+.|.|++.+.++..+++.++-. .+|.
T Consensus 67 ~~~~pg~~e~L~~L~---~~-~~~~IvS~~~~~~~~~~l~~~gl~-~~f~ 111 (205)
T PRK13582 67 LDPLPGAVEFLDWLR---ER-FQVVILSDTFYEFAGPLMRQLGWP-TLFC 111 (205)
T ss_pred CCCCCCHHHHHHHHH---hc-CCEEEEeCCcHHHHHHHHHHcCCc-hhhc
Confidence 345799777666665 34 899999999999999999987643 3444
No 53
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.57 E-value=0.014 Score=62.21 Aligned_cols=78 Identities=12% Similarity=0.062 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhcccCCCCCCeEE
Q 004140 259 PAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKMAM 338 (771)
Q Consensus 259 PgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~KsL~rLf~~g~~d~~~VV 338 (771)
||..++.++|. .+-..|+|.|+..+.+.....+.|.-.|--.- ..+.++.++++..|...+..-. -.-..++
T Consensus 121 pGA~e~L~~L~---~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~---~~d~lllr~~~~~K~~rr~~I~--~~y~Ivl 192 (266)
T TIGR01533 121 AGALDFLNYAN---SKGVKIFYVSNRSEKEKAATLKNLKRFGFPQA---DEEHLLLKKDKSSKESRRQKVQ--KDYEIVL 192 (266)
T ss_pred ccHHHHHHHHH---HCCCeEEEEeCCCcchHHHHHHHHHHcCcCCC---CcceEEeCCCCCCcHHHHHHHH--hcCCEEE
Confidence 88555555564 56788999999987777766665543332110 1256666655554543322210 1346789
Q ss_pred EEeCCc
Q 004140 339 VIDDRC 344 (771)
Q Consensus 339 IIDDR~ 344 (771)
.|+|+.
T Consensus 193 ~vGD~~ 198 (266)
T TIGR01533 193 LFGDNL 198 (266)
T ss_pred EECCCH
Confidence 999973
No 54
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.55 E-value=0.0035 Score=65.61 Aligned_cols=80 Identities=14% Similarity=0.212 Sum_probs=53.6
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~K----sL~rLf~~ 329 (771)
+.++|+..++.+.|+ .+.+.++|.|++.+.++..+++.++=. .+| +.++|.++ +..| -+..++..
T Consensus 100 ~~~~~g~~e~L~~Lk---~~g~~l~ivTn~~~~~~~~~l~~~~i~-~~f------~~i~~~d~~~~~Kp~p~~~~~~~~~ 169 (272)
T PRK13223 100 TVVYPGVRDTLKWLK---KQGVEMALITNKPERFVAPLLDQMKIG-RYF------RWIIGGDTLPQKKPDPAALLFVMKM 169 (272)
T ss_pred CccCCCHHHHHHHHH---HCCCeEEEEECCcHHHHHHHHHHcCcH-hhC------eEEEecCCCCCCCCCcHHHHHHHHH
Confidence 577899666666665 367899999999999999998876532 234 35666543 2122 13344433
Q ss_pred CCCCCCeEEEEeCCc
Q 004140 330 GLCHPKMAMVIDDRC 344 (771)
Q Consensus 330 g~~d~~~VVIIDDR~ 344 (771)
.+.+++.+|+|+|+.
T Consensus 170 ~g~~~~~~l~IGD~~ 184 (272)
T PRK13223 170 AGVPPSQSLFVGDSR 184 (272)
T ss_pred hCCChhHEEEECCCH
Confidence 235788999999985
No 55
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.48 E-value=0.0029 Score=61.82 Aligned_cols=78 Identities=8% Similarity=0.071 Sum_probs=49.1
Q ss_pred EecCChHHHHHHHHHhccC-cEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc-c---Hhhhccc
Q 004140 256 RLRPAWEDLRSYLIAKGRK-RFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK-S---LLNVFQR 329 (771)
Q Consensus 256 KLRPgweeLreFL~a~~sk-~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~K-s---L~rLf~~ 329 (771)
++.|+ +.++|+ ++.+ -|.++|.|++.+.++..+++.+.=. .+| +.|++.++ +..| + +..++..
T Consensus 92 ~~~~~---~~~~L~-~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~f------d~i~~s~~~~~~KP~~~~~~~~~~~ 160 (198)
T TIGR01428 92 PPHPD---VPAGLR-ALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPF------DAVLSADAVRAYKPAPQVYQLALEA 160 (198)
T ss_pred CCCCC---HHHHHH-HHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhh------heeEehhhcCCCCCCHHHHHHHHHH
Confidence 56789 455555 4444 4999999999999999999876421 234 45665533 2222 1 1222221
Q ss_pred CCCCCCeEEEEeCCc
Q 004140 330 GLCHPKMAMVIDDRC 344 (771)
Q Consensus 330 g~~d~~~VVIIDDR~ 344 (771)
-+..++.+++|+|+.
T Consensus 161 ~~~~p~~~~~vgD~~ 175 (198)
T TIGR01428 161 LGVPPDEVLFVASNP 175 (198)
T ss_pred hCCChhhEEEEeCCH
Confidence 124688899999986
No 56
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=96.44 E-value=0.018 Score=64.49 Aligned_cols=91 Identities=15% Similarity=0.270 Sum_probs=58.9
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCC--cc--cHhhhccc
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGS--RK--SLLNVFQR 329 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~--~K--sL~rLf~~ 329 (771)
.+++.||..+++++|+ ++.+-+.|.|++.+.|+..+++.++=+. +| +.++|.++.. .| -+......
T Consensus 328 ~~~l~pG~~e~L~~Lk---~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f------~~i~~~d~v~~~~kP~~~~~al~~ 397 (459)
T PRK06698 328 KGALYPNVKEIFTYIK---ENNCSIYIASNGLTEYLRAIVSYYDLDQ-WV------TETFSIEQINSLNKSDLVKSILNK 397 (459)
T ss_pred CCCcCCCHHHHHHHHH---HCCCeEEEEeCCchHHHHHHHHHCCcHh-hc------ceeEecCCCCCCCCcHHHHHHHHh
Confidence 3578899888888886 4679999999999999999999866432 33 3566654321 12 12222221
Q ss_pred CCCCCCeEEEEeCCcc-ccccCCCCCeEE
Q 004140 330 GLCHPKMAMVIDDRCK-VWEDKDQPRVHV 357 (771)
Q Consensus 330 g~~d~~~VVIIDDR~d-VW~~~~~NlI~V 357 (771)
.+++.+|+|.|+.. +-..+.. ++.+
T Consensus 398 --l~~~~~v~VGDs~~Di~aAk~A-G~~~ 423 (459)
T PRK06698 398 --YDIKEAAVVGDRLSDINAAKDN-GLIA 423 (459)
T ss_pred --cCcceEEEEeCCHHHHHHHHHC-CCeE
Confidence 24577999999863 3333333 4443
No 57
>PHA02597 30.2 hypothetical protein; Provisional
Probab=96.27 E-value=0.013 Score=57.35 Aligned_cols=96 Identities=10% Similarity=0.136 Sum_probs=53.5
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcc--cHhhhcccCC
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRK--SLLNVFQRGL 331 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~K--sL~rLf~~g~ 331 (771)
.+++.||+.++++.|+ +.+.+++.|++.......+.+.+.-. .+|.. ++..+++.++...| -+..+...-
T Consensus 72 ~~~~~pG~~e~L~~L~----~~~~~~i~Tn~~~~~~~~~~~~~~l~-~~f~~--~f~~i~~~~~~~~kp~~~~~a~~~~- 143 (197)
T PHA02597 72 YLSAYDDALDVINKLK----EDYDFVAVTALGDSIDALLNRQFNLN-ALFPG--AFSEVLMCGHDESKEKLFIKAKEKY- 143 (197)
T ss_pred hccCCCCHHHHHHHHH----hcCCEEEEeCCccchhHHHHhhCCHH-HhCCC--cccEEEEeccCcccHHHHHHHHHHh-
Confidence 3567899666555554 44678888888776555566555432 44432 23466666443322 122223221
Q ss_pred CCCCeEEEEeCCccccccCCCC--CeEEe
Q 004140 332 CHPKMAMVIDDRCKVWEDKDQP--RVHVV 358 (771)
Q Consensus 332 ~d~~~VVIIDDR~dVW~~~~~N--lI~VV 358 (771)
.++.+|+|||+..==....+. +|.++
T Consensus 144 -~~~~~v~vgDs~~di~aA~~a~~Gi~~i 171 (197)
T PHA02597 144 -GDRVVCFVDDLAHNLDAAHEALSQLPVI 171 (197)
T ss_pred -CCCcEEEeCCCHHHHHHHHHHHcCCcEE
Confidence 167799999997643333334 55544
No 58
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.27 E-value=0.021 Score=54.60 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=46.2
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~K----sL~rLf~~ 329 (771)
+++.|++.++++.|+ ...+.++|.|++. .+..+++.++=. . +++.+++.++ +..| -+..++..
T Consensus 86 ~~~~pg~~~~L~~L~---~~g~~~~i~s~~~--~~~~~l~~~~l~-~------~f~~~~~~~~~~~~kp~p~~~~~~~~~ 153 (185)
T TIGR01990 86 ADVLPGIKNLLDDLK---KNNIKIALASASK--NAPTVLEKLGLI-D------YFDAIVDPAEIKKGKPDPEIFLAAAEG 153 (185)
T ss_pred cccCccHHHHHHHHH---HCCCeEEEEeCCc--cHHHHHHhcCcH-h------hCcEEEehhhcCCCCCChHHHHHHHHH
Confidence 356799666666665 4579999999875 356666655422 2 2345655533 2222 12222322
Q ss_pred CCCCCCeEEEEeCCc
Q 004140 330 GLCHPKMAMVIDDRC 344 (771)
Q Consensus 330 g~~d~~~VVIIDDR~ 344 (771)
-.++++.+|+|+|+.
T Consensus 154 ~~~~~~~~v~vgD~~ 168 (185)
T TIGR01990 154 LGVSPSECIGIEDAQ 168 (185)
T ss_pred cCCCHHHeEEEecCH
Confidence 225678899999985
No 59
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.26 E-value=0.064 Score=52.55 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=47.9
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc-c---Hhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK-S---LLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~K-s---L~rLf~~ 329 (771)
+++-|++.++.++|+ .+.|.+.|.|++.+.+ ..+++.++=. .+ ++.|++.++ +..| + +..++..
T Consensus 104 ~~~~~g~~~~l~~L~---~~g~~~~i~Sn~~~~~-~~~l~~~~l~-~~------fd~i~~s~~~~~~KP~~~~~~~~~~~ 172 (203)
T TIGR02252 104 WQVYPDAIKLLKDLR---ERGLILGVISNFDSRL-RGLLEALGLL-EY------FDFVVTSYEVGAEKPDPKIFQEALER 172 (203)
T ss_pred ceeCcCHHHHHHHHH---HCCCEEEEEeCCchhH-HHHHHHCCcH-Hh------cceEEeecccCCCCCCHHHHHHHHHH
Confidence 367899766666665 3469999999998764 5555544221 22 345655432 3333 1 2323332
Q ss_pred CCCCCCeEEEEeCCc
Q 004140 330 GLCHPKMAMVIDDRC 344 (771)
Q Consensus 330 g~~d~~~VVIIDDR~ 344 (771)
-++.++.+|+|+|+.
T Consensus 173 ~~~~~~~~~~IgD~~ 187 (203)
T TIGR02252 173 AGISPEEALHIGDSL 187 (203)
T ss_pred cCCChhHEEEECCCc
Confidence 235789999999984
No 60
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.22 E-value=0.046 Score=56.57 Aligned_cols=95 Identities=15% Similarity=0.038 Sum_probs=57.5
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Ccc-c---Hhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK-S---LLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~~K-s---L~rLf~~ 329 (771)
+++-||+.+++++|+ .+.|.+.|.|++.+.++..+++.+.-.+ +|. +.|+|.++. ..| + +..++..
T Consensus 100 ~~~~pg~~elL~~L~---~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~-----d~i~~~~~~~~~KP~p~~~~~a~~~ 170 (267)
T PRK13478 100 ATPIPGVLEVIAALR---ARGIKIGSTTGYTREMMDVVVPLAAAQG-YRP-----DHVVTTDDVPAGRPYPWMALKNAIE 170 (267)
T ss_pred CCCCCCHHHHHHHHH---HCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCc-----eEEEcCCcCCCCCCChHHHHHHHHH
Confidence 466799888878776 4679999999999999999998754332 221 456665442 222 1 2222222
Q ss_pred CCCC-CCeEEEEeCCccccccCCCCCeEEe
Q 004140 330 GLCH-PKMAMVIDDRCKVWEDKDQPRVHVV 358 (771)
Q Consensus 330 g~~d-~~~VVIIDDR~dVW~~~~~NlI~VV 358 (771)
-++. ++-+|+|+|+..=-....+.++..+
T Consensus 171 l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i 200 (267)
T PRK13478 171 LGVYDVAACVKVDDTVPGIEEGLNAGMWTV 200 (267)
T ss_pred cCCCCCcceEEEcCcHHHHHHHHHCCCEEE
Confidence 1233 5789999998632222233355443
No 61
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=96.21 E-value=0.025 Score=57.20 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=54.8
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~K----sL~rLf~~ 329 (771)
.++-|++.++++-|+ .+-|.+.|+|+..+..+..+++.++=.. +|. -++|-.+ ...| .|..++..
T Consensus 88 ~~~~~gv~e~L~~L~---~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~------~i~g~~~~~~~KP~P~~l~~~~~~ 157 (220)
T COG0546 88 SRLFPGVKELLAALK---SAGYKLGIVTNKPERELDILLKALGLAD-YFD------VIVGGDDVPPPKPDPEPLLLLLEK 157 (220)
T ss_pred CccCCCHHHHHHHHH---hCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccc------eEEcCCCCCCCCcCHHHHHHHHHH
Confidence 456699777777776 5779999999999999999999866552 333 4555222 1222 34333332
Q ss_pred CCCCCCeEEEEeCCc-cccccCCC
Q 004140 330 GLCHPKMAMVIDDRC-KVWEDKDQ 352 (771)
Q Consensus 330 g~~d~~~VVIIDDR~-dVW~~~~~ 352 (771)
-+.+++.+|+|.|+. |+=..+..
T Consensus 158 ~~~~~~~~l~VGDs~~Di~aA~~A 181 (220)
T COG0546 158 LGLDPEEALMVGDSLNDILAAKAA 181 (220)
T ss_pred hCCChhheEEECCCHHHHHHHHHc
Confidence 223444667776654 45555544
No 62
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.19 E-value=0.0021 Score=63.79 Aligned_cols=92 Identities=9% Similarity=-0.012 Sum_probs=57.3
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeec-CCCcc----cHhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVK-SGSRK----SLLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisre-sg~~K----sL~rLf~~ 329 (771)
+++.|+ +.++|+ .+ .+.+.|.|++.+.++..+++.++=. .+|. +-++|.+ .+..| -+..++..
T Consensus 87 ~~~~~g---v~~~L~-~L--~~~~~ivTn~~~~~~~~~l~~~~l~-~~F~-----~~v~~~~~~~~~KP~p~~~~~a~~~ 154 (221)
T PRK10563 87 LEPIAG---ANALLE-SI--TVPMCVVSNGPVSKMQHSLGKTGML-HYFP-----DKLFSGYDIQRWKPDPALMFHAAEA 154 (221)
T ss_pred CCcCCC---HHHHHH-Hc--CCCEEEEeCCcHHHHHHHHHhcChH-HhCc-----ceEeeHHhcCCCCCChHHHHHHHHH
Confidence 556689 666776 44 3899999999999999988865433 2233 3345542 23222 23333332
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEe
Q 004140 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (771)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (771)
.++.++.+|+|+|+..=.....+-++.++
T Consensus 155 ~~~~p~~~l~igDs~~di~aA~~aG~~~i 183 (221)
T PRK10563 155 MNVNVENCILVDDSSAGAQSGIAAGMEVF 183 (221)
T ss_pred cCCCHHHeEEEeCcHhhHHHHHHCCCEEE
Confidence 23567889999998765554444466654
No 63
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.18 E-value=0.0035 Score=61.76 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=51.6
Q ss_pred HHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEee-cCCCcc----cHhhhcccCCCCCCe
Q 004140 262 EDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCV-KSGSRK----SLLNVFQRGLCHPKM 336 (771)
Q Consensus 262 eeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisr-esg~~K----sL~rLf~~g~~d~~~ 336 (771)
.++.++|+ +..++|.|+|.|||.+.++...++-+. =..+|. .|++. +-|..| -...++..-++.++.
T Consensus 102 ~~~~~~L~-~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~Fd------~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~ 173 (229)
T COG1011 102 PEALEALK-ELGKKYKLGILTNGARPHQERKLRQLG-LLDYFD------AVFISEDVGVAKPDPEIFEYALEKLGVPPEE 173 (229)
T ss_pred hhHHHHHH-HHHhhccEEEEeCCChHHHHHHHHHcC-Chhhhh------eEEEecccccCCCCcHHHHHHHHHcCCCcce
Confidence 33888887 666669999999999999999998765 334444 55555 445444 222233322356899
Q ss_pred EEEEeCCcc
Q 004140 337 AMVIDDRCK 345 (771)
Q Consensus 337 VVIIDDR~d 345 (771)
++.|||+..
T Consensus 174 ~l~VgD~~~ 182 (229)
T COG1011 174 ALFVGDSLE 182 (229)
T ss_pred EEEECCChh
Confidence 999999754
No 64
>COG4996 Predicted phosphatase [General function prediction only]
Probab=96.10 E-value=0.02 Score=56.17 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=59.3
Q ss_pred EEEEecCChHHHHHHHHHhc-cCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCC--cccHhhhcc-
Q 004140 253 VLVRLRPAWEDLRSYLIAKG-RKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGS--RKSLLNVFQ- 328 (771)
Q Consensus 253 y~VKLRPgweeLreFL~a~~-sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~--~KsL~rLf~- 328 (771)
.-|+|+|+ +++||+ .+ +.-|-+-.+|=.-.+-|.++++.||-. .||. .-|+ +--- -+=|..++.
T Consensus 38 ~ev~L~~~---v~~~l~-warnsG~i~~~~sWN~~~kA~~aLral~~~-~yFh-----y~Vi--ePhP~K~~ML~~llr~ 105 (164)
T COG4996 38 REVHLFPD---VKETLK-WARNSGYILGLASWNFEDKAIKALRALDLL-QYFH-----YIVI--EPHPYKFLMLSQLLRE 105 (164)
T ss_pred eEEEEcHH---HHHHHH-HHHhCCcEEEEeecCchHHHHHHHHHhchh-hhEE-----EEEe--cCCChhHHHHHHHHHH
Confidence 36889999 555554 22 567889999999999999999999987 4666 2222 2211 223444443
Q ss_pred -----cCCCCCCeEEEEeCCc----cccccCCC
Q 004140 329 -----RGLCHPKMAMVIDDRC----KVWEDKDQ 352 (771)
Q Consensus 329 -----~g~~d~~~VVIIDDR~----dVW~~~~~ 352 (771)
+.-..|+.+|.+|||. ++|.+-.+
T Consensus 106 i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~ 138 (164)
T COG4996 106 INTERNQKIKPSEIVYLDDRRIHFGNIWEYLGN 138 (164)
T ss_pred HHHhhccccCcceEEEEecccccHHHHHHhcCC
Confidence 1124678999999996 67877643
No 65
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.02 E-value=0.037 Score=55.66 Aligned_cols=39 Identities=10% Similarity=0.280 Sum_probs=33.2
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhh
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLL 296 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LL 296 (771)
++++||..++.++|+ .+-+.++|.|+|.+.|+..+++.+
T Consensus 73 ~~l~pG~~e~l~~l~---~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVK---ENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHH---HcCCeEEEECCCcHHHHHHHHHHh
Confidence 568899777777775 477999999999999999999865
No 66
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=96.01 E-value=0.056 Score=54.26 Aligned_cols=47 Identities=6% Similarity=0.197 Sum_probs=37.7
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIG 304 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~ 304 (771)
+++|||+.++.++|+ ...+.++|.|.+.+.|+..+++.+.+...++.
T Consensus 69 ~~l~pg~~e~l~~l~---~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~ 115 (214)
T TIGR03333 69 AEIREGFREFVAFIN---EHGIPFYVISGGMDFFVYPLLEGIVEKDRIYC 115 (214)
T ss_pred CcccccHHHHHHHHH---HCCCeEEEECCCcHHHHHHHHHhhCCcccEEe
Confidence 678999777777775 46799999999999999999998765444444
No 67
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=95.95 E-value=0.036 Score=58.29 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=59.8
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCC-----------ccc
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGS-----------RKS 322 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~-----------~Ks 322 (771)
|=+|-|-|. ||++|- ++.+++ .++||||-+..|..+++.|.-+ .+++.|+|.+..+ .+.
T Consensus 96 lq~LkPD~~-LRnlLL-~l~~r~-k~~FTNa~k~HA~r~Lk~LGie-------DcFegii~~e~~np~~~~~vcKP~~~a 165 (244)
T KOG3109|consen 96 LQDLKPDPV-LRNLLL-SLKKRR-KWIFTNAYKVHAIRILKKLGIE-------DCFEGIICFETLNPIEKTVVCKPSEEA 165 (244)
T ss_pred HhhcCCCHH-HHHHHH-hCcccc-EEEecCCcHHHHHHHHHHhChH-------HhccceeEeeccCCCCCceeecCCHHH
Confidence 444556643 999998 788888 9999999999999999998765 3456788874322 344
Q ss_pred HhhhcccCCC-CCCeEEEEeCCcc
Q 004140 323 LLNVFQRGLC-HPKMAMVIDDRCK 345 (771)
Q Consensus 323 L~rLf~~g~~-d~~~VVIIDDR~d 345 (771)
.+.++...+. +++.++++||+..
T Consensus 166 fE~a~k~agi~~p~~t~FfDDS~~ 189 (244)
T KOG3109|consen 166 FEKAMKVAGIDSPRNTYFFDDSER 189 (244)
T ss_pred HHHHHHHhCCCCcCceEEEcCchh
Confidence 5555543233 4899999999853
No 68
>PRK08238 hypothetical protein; Validated
Probab=95.81 E-value=0.038 Score=63.26 Aligned_cols=84 Identities=17% Similarity=0.206 Sum_probs=53.4
Q ss_pred EecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCC-----cc--cHhhhcc
Q 004140 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGS-----RK--SLLNVFQ 328 (771)
Q Consensus 256 KLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~-----~K--sL~rLf~ 328 (771)
.++|+ +.++|+..-++-+.+.|.|++.+.|++.+++.++- | +.+++-+++. .| .|...++
T Consensus 72 p~~pg---a~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----F------d~Vigsd~~~~~kg~~K~~~l~~~l~ 138 (479)
T PRK08238 72 PYNEE---VLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----F------DGVFASDGTTNLKGAAKAAALVEAFG 138 (479)
T ss_pred CCChh---HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----C------CEEEeCCCccccCCchHHHHHHHHhC
Confidence 35688 55566522267799999999999999999998853 2 3565554321 12 1333333
Q ss_pred cCCCCCCeEEEEeCCc---cccccCCCCCeEEe
Q 004140 329 RGLCHPKMAMVIDDRC---KVWEDKDQPRVHVV 358 (771)
Q Consensus 329 ~g~~d~~~VVIIDDR~---dVW~~~~~NlI~VV 358 (771)
.+.++.+.|+. .+|....+ .+.|-
T Consensus 139 -----~~~~~yvGDS~~Dlp~~~~A~~-av~Vn 165 (479)
T PRK08238 139 -----ERGFDYAGNSAADLPVWAAARR-AIVVG 165 (479)
T ss_pred -----ccCeeEecCCHHHHHHHHhCCC-eEEEC
Confidence 34456678877 58877764 55543
No 69
>PLN02940 riboflavin kinase
Probab=95.79 E-value=0.021 Score=63.18 Aligned_cols=81 Identities=15% Similarity=0.077 Sum_probs=52.9
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHH-hhCCCCCccccccccCceEeecCC-Ccc----cHhhhcc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWR-LLDPEGHLIGSKQLLDRVVCVKSG-SRK----SLLNVFQ 328 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~-LLDPdg~lF~~r~l~~RIisresg-~~K----sL~rLf~ 328 (771)
+++.|+..+++++|+ ++.+.+.|.|++.+.++..+++ .++= ..+| +.|+|.++. ..| -+..++.
T Consensus 92 ~~l~pGv~elL~~Lk---~~g~~l~IvTn~~~~~~~~~l~~~~gl-~~~F------d~ii~~d~v~~~KP~p~~~~~a~~ 161 (382)
T PLN02940 92 IKALPGANRLIKHLK---SHGVPMALASNSPRANIEAKISCHQGW-KESF------SVIVGGDEVEKGKPSPDIFLEAAK 161 (382)
T ss_pred CCCCcCHHHHHHHHH---HCCCcEEEEeCCcHHHHHHHHHhccCh-HhhC------CEEEehhhcCCCCCCHHHHHHHHH
Confidence 456799777777776 4679999999999999988776 4322 1233 466666542 223 2222332
Q ss_pred cCCCCCCeEEEEeCCcc
Q 004140 329 RGLCHPKMAMVIDDRCK 345 (771)
Q Consensus 329 ~g~~d~~~VVIIDDR~d 345 (771)
.-+..++.+|+|+|+..
T Consensus 162 ~lgv~p~~~l~VGDs~~ 178 (382)
T PLN02940 162 RLNVEPSNCLVIEDSLP 178 (382)
T ss_pred HcCCChhHEEEEeCCHH
Confidence 22246788999999863
No 70
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=95.61 E-value=0.038 Score=54.58 Aligned_cols=83 Identities=20% Similarity=0.139 Sum_probs=47.1
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCccc----Hhhhcc
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKS----LLNVFQ 328 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~Ks----L~rLf~ 328 (771)
+..+.|++.++.+.|+ ++-|.++|.|++.+.....+.....-=.. +++.+++.+. +..|- ...+..
T Consensus 82 ~~~~~~g~~e~L~~l~---~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~------~fd~v~~s~~~~~~KP~p~~~~~~~~ 152 (199)
T PRK09456 82 FVALRPEVIAIMHKLR---EQGHRVVVLSNTNRLHTTFWPEEYPEVRA------AADHIYLSQDLGMRKPEARIYQHVLQ 152 (199)
T ss_pred HhccCHHHHHHHHHHH---hCCCcEEEEcCCchhhHHHHHhhchhHHH------hcCEEEEecccCCCCCCHHHHHHHHH
Confidence 3567899555555554 35699999999998876544322100012 2345655532 32221 122222
Q ss_pred cCCCCCCeEEEEeCCcc
Q 004140 329 RGLCHPKMAMVIDDRCK 345 (771)
Q Consensus 329 ~g~~d~~~VVIIDDR~d 345 (771)
.-++.++.+|+|||+..
T Consensus 153 ~~~~~p~~~l~vgD~~~ 169 (199)
T PRK09456 153 AEGFSAADAVFFDDNAD 169 (199)
T ss_pred HcCCChhHeEEeCCCHH
Confidence 22257899999999853
No 71
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=95.53 E-value=0.14 Score=53.86 Aligned_cols=38 Identities=8% Similarity=-0.001 Sum_probs=29.5
Q ss_pred CChHHHHHHHHHhccCcEEEEEEeCC----chHHHHHHHHhhCCC
Q 004140 259 PAWEDLRSYLIAKGRKRFEVYVCTMA----ERDYALEMWRLLDPE 299 (771)
Q Consensus 259 PgweeLreFL~a~~sk~FElyVyTmg----tR~YA~~Il~LLDPd 299 (771)
|++.++.++|. .+-+.++|.|+. .+.++..+++.+.-.
T Consensus 117 ~~a~elL~~l~---~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~ 158 (237)
T TIGR01672 117 EVARQLIDMHQ---RRGDAIFFVTGRTPGKTDTVSKTLAKNFHIP 158 (237)
T ss_pred hHHHHHHHHHH---HCCCEEEEEeCCCCCcCHHHHHHHHHHhCCc
Confidence 44667777775 577999999998 677999999876654
No 72
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=95.43 E-value=0.031 Score=60.78 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccc
Q 004140 259 PAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIG 304 (771)
Q Consensus 259 PgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~ 304 (771)
|++.|+++.|+ ++.+-+.|+|.+.|.+|..+++.++-++ +|.
T Consensus 149 PgV~EaL~~Lk---ekGikLaIaTS~~Re~v~~~L~~lGLd~-YFd 190 (301)
T TIGR01684 149 PRIYDSLTELK---KRGCILVLWSYGDRDHVVESMRKVKLDR-YFD 190 (301)
T ss_pred HHHHHHHHHHH---HCCCEEEEEECCCHHHHHHHHHHcCCCc-ccC
Confidence 88555666665 4568999999999999999999888764 443
No 73
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=95.06 E-value=0.052 Score=53.62 Aligned_cols=84 Identities=25% Similarity=0.203 Sum_probs=44.7
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhcc
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQ 328 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~K----sL~rLf~ 328 (771)
.+++.|++.++.+.|+ .+.|.++|.|++...+...+..++ ..+ +. .+++.|++.++ +..| -+..+..
T Consensus 92 ~~~~~~~~~~~L~~L~---~~g~~l~i~Sn~~~~~~~~~~~~~-~~~-l~---~~fd~v~~s~~~~~~KP~p~~~~~~~~ 163 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLR---AKGFKTACITNNFPTDHSAEEALL-PGD-IM---ALFDAVVESCLEGLRKPDPRIYQLMLE 163 (211)
T ss_pred ccccChhHHHHHHHHH---HCCCeEEEEeCCCCccchhhhHhh-hhh-hH---hhCCEEEEeeecCCCCCCHHHHHHHHH
Confidence 4667899666555554 356999999999766522222221 111 11 12345655432 3223 1222222
Q ss_pred cCCCCCCeEEEEeCCcc
Q 004140 329 RGLCHPKMAMVIDDRCK 345 (771)
Q Consensus 329 ~g~~d~~~VVIIDDR~d 345 (771)
.-++.++.+|+|||+..
T Consensus 164 ~~g~~~~~~l~i~D~~~ 180 (211)
T TIGR02247 164 RLGVAPEECVFLDDLGS 180 (211)
T ss_pred HcCCCHHHeEEEcCCHH
Confidence 22246788888899753
No 74
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=94.96 E-value=0.023 Score=57.99 Aligned_cols=83 Identities=16% Similarity=0.068 Sum_probs=50.0
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeec---CCCcccHhhhcccCC
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVK---SGSRKSLLNVFQRGL 331 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisre---sg~~KsL~rLf~~g~ 331 (771)
++..||+.++.+.|+ ++..-+-|.|.+.|.-+..+++.+.-.. +|......+.+...| +...+...++.
T Consensus 85 ~~~~pGv~~~l~~L~---~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lg---- 156 (221)
T COG0637 85 LKPIPGVVELLEQLK---ARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVTADDVARGKPAPDIYLLAAERLG---- 156 (221)
T ss_pred CCCCccHHHHHHHHH---hcCCcEEEecCChHHHHHHHHHHccChh-hcchhccHHHHhcCCCCCHHHHHHHHHcC----
Confidence 456799666666664 2338899999999999999998765442 344211112221111 11244555543
Q ss_pred CCCCeEEEEeCCcc
Q 004140 332 CHPKMAMVIDDRCK 345 (771)
Q Consensus 332 ~d~~~VVIIDDR~d 345 (771)
.++..+|+|+|...
T Consensus 157 v~P~~CvviEDs~~ 170 (221)
T COG0637 157 VDPEECVVVEDSPA 170 (221)
T ss_pred CChHHeEEEecchh
Confidence 36899999999853
No 75
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=94.81 E-value=0.062 Score=57.71 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=44.7
Q ss_pred cCChHHHHHHHHHhc-cCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhcccCCCCCCe
Q 004140 258 RPAWEDLRSYLIAKG-RKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKM 336 (771)
Q Consensus 258 RPgweeLreFL~a~~-sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~KsL~rLf~~g~~d~~~ 336 (771)
.|+ +.++|+ ++ .+-+-+.|+|+..+..|..+++. -|+ .|+-..++.-+.+-.......+..+...-+..+.-
T Consensus 33 ~~~---~~e~L~-~L~~~Gi~lai~S~n~~~~a~~~l~~-~~~--~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~ 105 (320)
T TIGR01686 33 HKT---LQEKIK-TLKKQGFLLALASKNDEDDAKKVFER-RKD--FILQAEDFDARSINWGPKSESLRKIAKKLNLGTDS 105 (320)
T ss_pred HHH---HHHHHH-HHHhCCCEEEEEcCCCHHHHHHHHHh-Ccc--ccCcHHHeeEEEEecCchHHHHHHHHHHhCCCcCc
Confidence 366 555554 22 46689999999999999998875 111 12211112222221111222344433322246889
Q ss_pred EEEEeCCc
Q 004140 337 AMVIDDRC 344 (771)
Q Consensus 337 VVIIDDR~ 344 (771)
+|+|||++
T Consensus 106 ~vfidD~~ 113 (320)
T TIGR01686 106 FLFIDDNP 113 (320)
T ss_pred EEEECCCH
Confidence 99999965
No 76
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=94.68 E-value=0.064 Score=54.47 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=34.0
Q ss_pred EecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccc
Q 004140 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIG 304 (771)
Q Consensus 256 KLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~ 304 (771)
+++|++.++.+.|+ +.+.+.|.|.+.+.|+..+++.|+-+ .+|.
T Consensus 68 ~l~pga~ell~~lk----~~~~~~IVS~~~~~~~~~il~~lgi~-~~~a 111 (203)
T TIGR02137 68 KPLEGAVEFVDWLR----ERFQVVILSDTFYEFSQPLMRQLGFP-TLLC 111 (203)
T ss_pred CCCccHHHHHHHHH----hCCeEEEEeCChHHHHHHHHHHcCCc-hhhc
Confidence 46799666555554 34699999999999999999987765 3555
No 77
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=94.64 E-value=0.21 Score=54.53 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=51.0
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCcccccc-cc-CceEeec-----CC--CcccHhh
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQ-LL-DRVVCVK-----SG--SRKSLLN 325 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~-l~-~RIisre-----sg--~~KsL~r 325 (771)
++++||.+++.+.|+ +.-+.+.|.|.|...+++.+.+.|+-+. +|.+.. +. .++.... ++ ...-|..
T Consensus 180 l~l~pGa~elL~~Lk---~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~ 255 (322)
T PRK11133 180 LPLMPGLTELVLKLQ---ALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTR 255 (322)
T ss_pred CCCChhHHHHHHHHH---HcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHH
Confidence 457899777777776 4668999999999999999998765432 111100 00 1111110 11 1223444
Q ss_pred hcccCCCCCCeEEEEeCCc
Q 004140 326 VFQRGLCHPKMAMVIDDRC 344 (771)
Q Consensus 326 Lf~~g~~d~~~VVIIDDR~ 344 (771)
+...-+.+++.+|.|.|..
T Consensus 256 la~~lgi~~~qtIaVGDg~ 274 (322)
T PRK11133 256 LAQEYEIPLAQTVAIGDGA 274 (322)
T ss_pred HHHHcCCChhhEEEEECCH
Confidence 4433234678888888875
No 78
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.55 E-value=0.13 Score=64.00 Aligned_cols=82 Identities=17% Similarity=0.020 Sum_probs=54.5
Q ss_pred ecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCC-ccc----HhhhcccCC
Q 004140 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGS-RKS----LLNVFQRGL 331 (771)
Q Consensus 257 LRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~-~Ks----L~rLf~~g~ 331 (771)
+-||..+++++|+ ++-|.+.|.|++.+.++..+++.++=...+| +.++|.++.. .|- +..+...-+
T Consensus 162 ~~pG~~elL~~Lk---~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~F------d~iv~~~~~~~~KP~Pe~~~~a~~~lg 232 (1057)
T PLN02919 162 GFPGALELITQCK---NKGLKVAVASSADRIKVDANLAAAGLPLSMF------DAIVSADAFENLKPAPDIFLAAAKILG 232 (1057)
T ss_pred cCccHHHHHHHHH---hCCCeEEEEeCCcHHHHHHHHHHcCCChhHC------CEEEECcccccCCCCHHHHHHHHHHcC
Confidence 4599777777776 4679999999999999999998765433344 4666664422 221 222222222
Q ss_pred CCCCeEEEEeCCcccc
Q 004140 332 CHPKMAMVIDDRCKVW 347 (771)
Q Consensus 332 ~d~~~VVIIDDR~dVW 347 (771)
..++.+|+|+|+..=.
T Consensus 233 v~p~e~v~IgDs~~Di 248 (1057)
T PLN02919 233 VPTSECVVIEDALAGV 248 (1057)
T ss_pred cCcccEEEEcCCHHHH
Confidence 4688899999986433
No 79
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.47 E-value=0.064 Score=56.04 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=59.0
Q ss_pred ecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeec--------CCC--------c
Q 004140 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVK--------SGS--------R 320 (771)
Q Consensus 257 LRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisre--------sg~--------~ 320 (771)
+.|++.++...|. ..-+.+.|.|+..+.++..+++.|+-.+.+|. .+++.+ .+. .
T Consensus 188 ~~~~~~~~l~~l~---~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~------~i~~~~~~~~~~~~~~~~kp~p~~~~ 258 (300)
T PHA02530 188 PNPMVVELVKMYK---AAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFD------DLIGRPPDMHFQREQGDKRPDDVVKE 258 (300)
T ss_pred CChhHHHHHHHHH---hCCCEEEEEeCCChhhHHHHHHHHHHcCCchh------hhhCCcchhhhcccCCCCCCcHHHHH
Confidence 3488555445553 45699999999999999999999988887775 233332 111 2
Q ss_pred ccHhhhcccCCCCCCeEEEEeCCccccccCCCCCeEEe
Q 004140 321 KSLLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (771)
Q Consensus 321 KsL~rLf~~g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (771)
+.|.++.. -.++.+|.|||+..+=....+.+|.++
T Consensus 259 ~~l~~~~~---~~~~~~~~vgD~~~d~~~a~~~Gi~~i 293 (300)
T PHA02530 259 EIFWEKIA---PKYDVLLAVDDRDQVVDMWRRIGLECW 293 (300)
T ss_pred HHHHHHhc---cCceEEEEEcCcHHHHHHHHHhCCeEE
Confidence 23444322 146899999999876555444455543
No 80
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=94.32 E-value=0.16 Score=52.20 Aligned_cols=85 Identities=19% Similarity=0.110 Sum_probs=56.7
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccc------cccCceEee---cCCCcccHhh
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSK------QLLDRVVCV---KSGSRKSLLN 325 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r------~l~~RIisr---esg~~KsL~r 325 (771)
++++|+..++..+|+ +.-+.+.|.|.|-..|+..|.+.|.-+..+ +.+ .+..+++-. ..+..+.|.+
T Consensus 76 ~~l~~ga~elv~~lk---~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~-an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~ 151 (212)
T COG0560 76 LRLTPGAEELVAALK---AAGAKVVIISGGFTFLVEPIAERLGIDYVV-ANELEIDDGKLTGRVVGPICDGEGKAKALRE 151 (212)
T ss_pred CcCCccHHHHHHHHH---HCCCEEEEEcCChHHHHHHHHHHhCCchhe-eeEEEEeCCEEeceeeeeecCcchHHHHHHH
Confidence 788899999999997 688999999999999999999988765322 110 122333322 1122345666
Q ss_pred hcccCCCCCCeEEEEeCC
Q 004140 326 VFQRGLCHPKMAMVIDDR 343 (771)
Q Consensus 326 Lf~~g~~d~~~VVIIDDR 343 (771)
++..-+..++.++-+-|.
T Consensus 152 ~~~~~g~~~~~~~a~gDs 169 (212)
T COG0560 152 LAAELGIPLEETVAYGDS 169 (212)
T ss_pred HHHHcCCCHHHeEEEcCc
Confidence 665322355677777775
No 81
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=94.32 E-value=0.15 Score=55.64 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCC
Q 004140 259 PAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPE 299 (771)
Q Consensus 259 PgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPd 299 (771)
|+..++++.|+ .+-+-+.|+|+|.+.+|..+++.++-+
T Consensus 151 p~V~EtL~eLk---ekGikLaIvTNg~Re~v~~~Le~lgL~ 188 (303)
T PHA03398 151 PFVYDSLDELK---ERGCVLVLWSYGNREHVVHSLKETKLE 188 (303)
T ss_pred hhHHHHHHHHH---HCCCEEEEEcCCChHHHHHHHHHcCCC
Confidence 78555555554 466999999999999999999987775
No 82
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=94.28 E-value=0.11 Score=47.91 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=55.6
Q ss_pred EEEecCChHHHHHHHHHhcc-CcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCccc----Hhhhc
Q 004140 254 LVRLRPAWEDLRSYLIAKGR-KRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKS----LLNVF 327 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~s-k~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~Ks----L~rLf 327 (771)
..++.|+ +.++|+ +++ +.|.++|+|++.+.+...+++.+.-. .+| +.+++.++ +..|. +..+.
T Consensus 75 ~~~~~~~---~~~~L~-~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f------~~i~~~~~~~~~Kp~~~~~~~~~ 143 (176)
T PF13419_consen 75 KLQPYPG---VRELLE-RLKAKGIPLVIVSNGSRERIERVLERLGLD-DYF------DEIISSDDVGSRKPDPDAYRRAL 143 (176)
T ss_dssp GEEESTT---HHHHHH-HHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGC------SEEEEGGGSSSSTTSHHHHHHHH
T ss_pred ccchhhh---hhhhhh-hcccccceeEEeecCCcccccccccccccc-ccc------ccccccchhhhhhhHHHHHHHHH
Confidence 5677899 555665 444 89999999999999999999987544 334 46666643 33332 44443
Q ss_pred ccCCCCCCeEEEEeCCc
Q 004140 328 QRGLCHPKMAMVIDDRC 344 (771)
Q Consensus 328 ~~g~~d~~~VVIIDDR~ 344 (771)
..-++.++.+|.|||+.
T Consensus 144 ~~~~~~p~~~~~vgD~~ 160 (176)
T PF13419_consen 144 EKLGIPPEEILFVGDSP 160 (176)
T ss_dssp HHHTSSGGGEEEEESSH
T ss_pred HHcCCCcceEEEEeCCH
Confidence 32235789999999986
No 83
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=93.97 E-value=0.33 Score=43.84 Aligned_cols=62 Identities=26% Similarity=0.186 Sum_probs=42.6
Q ss_pred HHHHHHHHHhC------CCCceEEEEeeeCCCceEEEEEEECCE-----EEEEEeeCCHHHHHHHHHHHHHHHHHHh
Q 004140 628 IGVLQEIGKRC------SSKVEFRSVVSTSKDLQFSVEVLFTGE-----KIGVGMGKTRKDAQQQAAENALHYLAEK 693 (771)
Q Consensus 628 KS~LQE~aQK~------~~~peYeiv~~sGH~~~FtVeV~I~Ge-----k~G~G~GkSKKEAEQ~AAK~ALe~L~~k 693 (771)
.+.|+.||++- ...|.|.+....+ .|.++|.+-.. ..|. .-.|||.|++.||-.|+.+|.+.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~---~~~c~v~LP~~~pi~~i~g~-~~~sk~~AK~sAAf~Ac~~L~~~ 74 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS---GFICTVILPINSPIRSIEGP-PMRSKKLAKRSAAFEACKKLHEA 74 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G----EEEEEE--TT-SS--EEEE---SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC---cEEEEEECCCCCCCCeEEcc-ccccHHHHHHHHHHHHHHHHHHc
Confidence 57899999995 3569999865433 89999887432 3333 45799999999999999999753
No 84
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=93.75 E-value=0.22 Score=49.10 Aligned_cols=87 Identities=13% Similarity=0.061 Sum_probs=50.5
Q ss_pred ecCChHHHHHHHHHhccCcEEEEEEeCCchH------------HHHHHHHhhCCCCCccccccccCceEeecCC-Ccc--
Q 004140 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERD------------YALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK-- 321 (771)
Q Consensus 257 LRPgweeLreFL~a~~sk~FElyVyTmgtR~------------YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~~K-- 321 (771)
+-|+..++++.|+ .+.|.+.|.|++... ++..+++.++-. + .-+++...+ ..|
T Consensus 43 ~~pgv~e~L~~Lk---~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~---~------~~ii~~~~~~~~KP~ 110 (166)
T TIGR01664 43 LYPEIPAKLQELD---DEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP---I------QVLAATHAGLYRKPM 110 (166)
T ss_pred ecCCHHHHHHHHH---HCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC---E------EEEEecCCCCCCCCc
Confidence 3488666666665 578999999998774 344555554432 1 122332222 122
Q ss_pred --cHhhhcccCC--CCCCeEEEEeCCc---------cccccCCCCCeE
Q 004140 322 --SLLNVFQRGL--CHPKMAMVIDDRC---------KVWEDKDQPRVH 356 (771)
Q Consensus 322 --sL~rLf~~g~--~d~~~VVIIDDR~---------dVW~~~~~NlI~ 356 (771)
-+..+...-+ ++++.+++|.|+. |+-..+.. +|.
T Consensus 111 p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~a-Gi~ 157 (166)
T TIGR01664 111 TGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNL-GLE 157 (166)
T ss_pred cHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHC-CCC
Confidence 2333333222 5788999999996 67665543 444
No 85
>PRK11590 hypothetical protein; Provisional
Probab=93.45 E-value=0.15 Score=51.36 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=30.4
Q ss_pred EEecCChHHHH-HHHHHhccCcEEEEEEeCCchHHHHHHHHhhC
Q 004140 255 VRLRPAWEDLR-SYLIAKGRKRFEVYVCTMAERDYALEMWRLLD 297 (771)
Q Consensus 255 VKLRPgweeLr-eFL~a~~sk~FElyVyTmgtR~YA~~Il~LLD 297 (771)
++++|+..++. +.|+ +.-+.+.|.|++.+.|+..+++.+.
T Consensus 94 ~~~~pga~e~L~~~l~---~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLL---SSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHH---hCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 45689944433 3333 4789999999999999999998755
No 86
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=93.19 E-value=0.32 Score=51.16 Aligned_cols=40 Identities=8% Similarity=0.014 Sum_probs=29.3
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeC----CchHHHHHHHHhhC
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTM----AERDYALEMWRLLD 297 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTm----gtR~YA~~Il~LLD 297 (771)
.++.|+..++.++|+ .+-++|++.|+ ..+.++..+++.+.
T Consensus 113 a~p~~Ga~elL~~L~---~~G~~I~iVTnR~~~k~~~t~~~Llk~~g 156 (237)
T PRK11009 113 SIPKEVARQLIDMHV---KRGDSIYFITGRTATKTETVSKTLADDFH 156 (237)
T ss_pred CcchHHHHHHHHHHH---HCCCeEEEEeCCCCcccHHHHHHHHHHcC
Confidence 445577666666665 67899999999 45778888888544
No 87
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=91.66 E-value=0.32 Score=50.21 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=60.5
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Cccc----Hhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRKS----LLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~~Ks----L~rLf~~ 329 (771)
+.+.||+.+++++|+ ++.|.+.|.|++.+.++..+++.++-. .+| +.|+|.++. ..|- +..+...
T Consensus 107 ~~l~pgv~e~L~~L~---~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~F------d~iv~~~~~~~~KP~p~~~~~a~~~ 176 (248)
T PLN02770 107 LKPLNGLYKLKKWIE---DRGLKRAAVTNAPRENAELMISLLGLS-DFF------QAVIIGSECEHAKPHPDPYLKALEV 176 (248)
T ss_pred CCcCccHHHHHHHHH---HcCCeEEEEeCCCHHHHHHHHHHcCCh-hhC------cEEEecCcCCCCCCChHHHHHHHHH
Confidence 467799777777776 467999999999999999999987644 234 466666542 2221 2222222
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEe
Q 004140 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (771)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (771)
-++.++.+++|+|+..=-....+.++.++
T Consensus 177 ~~~~~~~~l~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 177 LKVSKDHTFVFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred hCCChhHEEEEcCCHHHHHHHHHCCCEEE
Confidence 22568889999998732222233456544
No 88
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=91.13 E-value=0.53 Score=46.18 Aligned_cols=95 Identities=19% Similarity=0.108 Sum_probs=60.4
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Ccc----cHhhhcc
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRK----SLLNVFQ 328 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~~K----sL~rLf~ 328 (771)
.+++.|+..++++.|+ .+.|.+.|.|++.+.++..+++.++=.+ +| +.++|.++. ..| -+..++.
T Consensus 83 ~~~~~~g~~~~L~~l~---~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f------~~~~~~~~~~~~Kp~p~~~~~~~~ 152 (213)
T TIGR01449 83 LTSVFPGVEATLGALR---AKGLRLGLVTNKPTPLARPLLELLGLAK-YF------SVLIGGDSLAQRKPHPDPLLLAAE 152 (213)
T ss_pred cCccCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCcHh-hC------cEEEecCCCCCCCCChHHHHHHHH
Confidence 4678999666666664 3569999999999999999999875432 33 356665432 222 2333333
Q ss_pred cCCCCCCeEEEEeCCccccccCCCCCeEEe
Q 004140 329 RGLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (771)
Q Consensus 329 ~g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (771)
.-+..++.+++|+|+..=.....+.++..+
T Consensus 153 ~~~~~~~~~~~igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 153 RLGVAPQQMVYVGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred HcCCChhHeEEeCCCHHHHHHHHHCCCeEE
Confidence 222467889999998654433333355544
No 89
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=91.10 E-value=1.1 Score=45.21 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=45.2
Q ss_pred EEEEecCChHHHHHHHHHhccCcEEEEEEe-CCchHHHHHHHHhhCCC---------CCccccccccCceEeecCCC-cc
Q 004140 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCT-MAERDYALEMWRLLDPE---------GHLIGSKQLLDRVVCVKSGS-RK 321 (771)
Q Consensus 253 y~VKLRPgweeLreFL~a~~sk~FElyVyT-mgtR~YA~~Il~LLDPd---------g~lF~~r~l~~RIisresg~-~K 321 (771)
.-|++-|.+.+++.-|+ ..-..|-|.+ ..+...|.+++++|+-. ..+|.+ .-...|+ .+
T Consensus 42 ~~v~lypdv~~iL~~L~---~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~-------~eI~~gsK~~ 111 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELK---ERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDY-------LEIYPGSKTT 111 (169)
T ss_dssp -EE---TTHHHHHHHHH---HCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECE-------EEESSS-HHH
T ss_pred CEEEeCcCHHHHHHHHH---HCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcch-------hheecCchHH
Confidence 45778899666666665 4888999998 67889999999997765 122331 1122333 44
Q ss_pred cHhhhcccCCCCCCeEEEEeCCc
Q 004140 322 SLLNVFQRGLCHPKMAMVIDDRC 344 (771)
Q Consensus 322 sL~rLf~~g~~d~~~VVIIDDR~ 344 (771)
.+.++....+.+.+-++++||..
T Consensus 112 Hf~~i~~~tgI~y~eMlFFDDe~ 134 (169)
T PF12689_consen 112 HFRRIHRKTGIPYEEMLFFDDES 134 (169)
T ss_dssp HHHHHHHHH---GGGEEEEES-H
T ss_pred HHHHHHHhcCCChhHEEEecCch
Confidence 56655543234677899999963
No 90
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=90.78 E-value=0.58 Score=55.66 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=32.9
Q ss_pred hcccchHHHHHHHhhhcchhhhhhhhHHHHHhhhhhhcccccCCCCCCCCccccccccC
Q 004140 372 ANAVPVLCVARNVACNVRGCFFKEFDENLLRSISEVFYEDEAVNLPAAPDVSNYLMSED 430 (771)
Q Consensus 372 ~~~~p~L~~~~~VL~~Vh~~fFk~~De~l~~ri~e~~~e~~~~~~~~~pdv~n~l~~e~ 430 (771)
......|+.+..+|.+||..||...+ +.......+||+-.|-+-.
T Consensus 394 ~~~D~~L~~~~kvl~~vH~~ff~~~~--------------~~~e~~~~~Dvr~~i~~~~ 438 (635)
T KOG0323|consen 394 SDEDGELANLLKVLKPVHKGFFAKYD--------------EVEETLESPDVRLLIPELR 438 (635)
T ss_pred cccchhHHHHhhhhcccchhhhhccc--------------cccccccCCChhhhhhhhh
Confidence 34456899999999999999999876 1123344678888776554
No 91
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=89.89 E-value=1.2 Score=46.98 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=31.4
Q ss_pred ecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhC
Q 004140 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLD 297 (771)
Q Consensus 257 LRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLD 297 (771)
+-|+..++.+||. +-...|+++|-.-|..-|-+.|++.-+
T Consensus 72 ~~pgm~~~l~~l~-~~~~~~~~~IiSDaNs~fI~~iL~~~g 111 (234)
T PF06888_consen 72 IDPGMKELLRFLA-KNQRGFDLIIISDANSFFIETILEHHG 111 (234)
T ss_pred CCccHHHHHHHHH-hcCCCceEEEEeCCcHhHHHHHHHhCC
Confidence 3488667777774 346799999999999999999987543
No 92
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=89.50 E-value=0.82 Score=46.67 Aligned_cols=81 Identities=15% Similarity=0.036 Sum_probs=53.7
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCccc----Hhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKS----LLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~Ks----L~rLf~~ 329 (771)
+++.|+..++++.|+ .+-|-++|.|++.+.++..+++.++=. .+| +.|+|.++ +..|- ...+...
T Consensus 92 ~~~~~g~~e~L~~Lk---~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~f------d~iv~s~~~~~~KP~p~~~~~~~~~ 161 (224)
T PRK14988 92 AVLREDTVPFLEALK---ASGKRRILLTNAHPHNLAVKLEHTGLD-AHL------DLLLSTHTFGYPKEDQRLWQAVAEH 161 (224)
T ss_pred CCcCCCHHHHHHHHH---hCCCeEEEEeCcCHHHHHHHHHHCCcH-HHC------CEEEEeeeCCCCCCCHHHHHHHHHH
Confidence 577899777777776 457899999999999999988865422 233 45665533 32332 2222222
Q ss_pred CCCCCCeEEEEeCCcc
Q 004140 330 GLCHPKMAMVIDDRCK 345 (771)
Q Consensus 330 g~~d~~~VVIIDDR~d 345 (771)
-+..++.+|+|||+..
T Consensus 162 ~~~~p~~~l~igDs~~ 177 (224)
T PRK14988 162 TGLKAERTLFIDDSEP 177 (224)
T ss_pred cCCChHHEEEEcCCHH
Confidence 2257889999999964
No 93
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=89.37 E-value=4.5 Score=39.16 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=50.9
Q ss_pred EEEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCC-CccccccccCceEeecCCCcccHhhhcccCC
Q 004140 253 VLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEG-HLIGSKQLLDRVVCVKSGSRKSLLNVFQRGL 331 (771)
Q Consensus 253 y~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg-~lF~~r~l~~RIisresg~~KsL~rLf~~g~ 331 (771)
..-.+||+..++.+.|+ ..-+.++|.|..++.-|..+++.|.-.. .+|. ++. .....|-+.++...-.
T Consensus 124 ~~d~~~~~~~~~l~~L~---~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a------~~~--~kP~~k~~~~~i~~l~ 192 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELK---EAGIKVAILTGDNESTASAIAKQLGIFDSIVFA------RVI--GKPEPKIFLRIIKELQ 192 (215)
T ss_dssp EEEEBHTTHHHHHHHHH---HTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEE------SHE--TTTHHHHHHHHHHHHT
T ss_pred ecCcchhhhhhhhhhhh---ccCcceeeeeccccccccccccccccccccccc------ccc--ccccchhHHHHHHHHh
Confidence 45578999666656554 3458999999999999999999988742 2333 111 1223342233332111
Q ss_pred CCCCeEEEEeCCc
Q 004140 332 CHPKMAMVIDDRC 344 (771)
Q Consensus 332 ~d~~~VVIIDDR~ 344 (771)
..+..|+.|.|..
T Consensus 193 ~~~~~v~~vGDg~ 205 (215)
T PF00702_consen 193 VKPGEVAMVGDGV 205 (215)
T ss_dssp CTGGGEEEEESSG
T ss_pred cCCCEEEEEccCH
Confidence 2456899998864
No 94
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=88.76 E-value=0.81 Score=45.05 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=57.6
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc-c---Hhhhcc
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK-S---LLNVFQ 328 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~K-s---L~rLf~ 328 (771)
.++++|++.++.+.|+ +.|.+.|.|++.+.++..+++.++=.. +| +.|++..+ +..| + +..++.
T Consensus 95 ~~~~~~g~~~~L~~l~----~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~f------d~i~~~~~~~~~KP~~~~~~~~~~ 163 (224)
T TIGR02254 95 GHQLLPGAFELMENLQ----QKFRLYIVTNGVRETQYKRLRKSGLFP-FF------DDIFVSEDAGIQKPDKEIFNYALE 163 (224)
T ss_pred cCeeCccHHHHHHHHH----hcCcEEEEeCCchHHHHHHHHHCCcHh-hc------CEEEEcCccCCCCCCHHHHHHHHH
Confidence 3578999666656554 339999999999999999988754332 33 46666533 3222 1 222222
Q ss_pred cC-CCCCCeEEEEeCCc--cccccCCCCCeE
Q 004140 329 RG-LCHPKMAMVIDDRC--KVWEDKDQPRVH 356 (771)
Q Consensus 329 ~g-~~d~~~VVIIDDR~--dVW~~~~~NlI~ 356 (771)
.. ++.++.+|.|+|+. |+=..... +++
T Consensus 164 ~~~~~~~~~~v~igD~~~~di~~A~~~-G~~ 193 (224)
T TIGR02254 164 RMPKFSKEEVLMIGDSLTADIKGGQNA-GLD 193 (224)
T ss_pred HhcCCCchheEEECCCcHHHHHHHHHC-CCc
Confidence 21 25688999999984 66555544 444
No 95
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=88.01 E-value=1.3 Score=42.50 Aligned_cols=33 Identities=6% Similarity=0.023 Sum_probs=26.5
Q ss_pred HHHHHhc-cCcEEEEEEeCCchHHHHHHHHhhCCC
Q 004140 266 SYLIAKG-RKRFEVYVCTMAERDYALEMWRLLDPE 299 (771)
Q Consensus 266 eFL~a~~-sk~FElyVyTmgtR~YA~~Il~LLDPd 299 (771)
++|+ .. +..++++|-|.+.+.|+..+++.+.-+
T Consensus 96 e~i~-~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 96 ELIR-ELKDNGIKVVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp HHHH-HHHHTTSEEEEEEEEEHHHHHHHHHHTTSS
T ss_pred HHHH-HHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 5554 21 679999999999999999999976644
No 96
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=86.69 E-value=0.86 Score=48.46 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=59.5
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~K----sL~rLf~~ 329 (771)
+++.||+.+++++|+ .+.|.+.|.|++.+.++..+++.+.=. .+|.. ++ +++.++ +..| -+..++..
T Consensus 143 ~~l~pGv~elL~~L~---~~g~~l~IvTn~~~~~~~~~l~~~~~~-~~~~~---~~-~v~~~~~~~~KP~p~~~~~a~~~ 214 (286)
T PLN02779 143 LPLRPGVLRLMDEAL---AAGIKVAVCSTSNEKAVSKIVNTLLGP-ERAQG---LD-VFAGDDVPKKKPDPDIYNLAAET 214 (286)
T ss_pred CCchhhHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHhccc-cccCc---eE-EEeccccCCCCCCHHHHHHHHHH
Confidence 578899777777776 467999999999999999998865211 23331 11 222222 2222 12222222
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEEe
Q 004140 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHVV 358 (771)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~VV 358 (771)
-+.+++.+|+|+|+..=.....+.++.++
T Consensus 215 ~~~~p~~~l~IGDs~~Di~aA~~aG~~~i 243 (286)
T PLN02779 215 LGVDPSRCVVVEDSVIGLQAAKAAGMRCI 243 (286)
T ss_pred hCcChHHEEEEeCCHHhHHHHHHcCCEEE
Confidence 22468889999999765555555566554
No 97
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=86.61 E-value=1.1 Score=45.01 Aligned_cols=93 Identities=10% Similarity=0.102 Sum_probs=62.1
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Cc----ccHhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SR----KSLLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~~----KsL~rLf~~ 329 (771)
+++.|++.++.++|+ .+.|.++|.|++.+.++..+++.+.=+ .+| +.++|.+.. .. ..+..++..
T Consensus 91 ~~~~~g~~~~l~~l~---~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f------~~~~~~~~~~~~Kp~~~~~~~~~~~ 160 (222)
T PRK10826 91 RPLLPGVREALALCK---AQGLKIGLASASPLHMLEAVLTMFDLR-DYF------DALASAEKLPYSKPHPEVYLNCAAK 160 (222)
T ss_pred CCCCCCHHHHHHHHH---HCCCeEEEEeCCcHHHHHHHHHhCcch-hcc------cEEEEcccCCCCCCCHHHHHHHHHH
Confidence 456799777777775 467999999999999999999986533 223 466666432 11 234444443
Q ss_pred CCCCCCeEEEEeCCccccccCCCCCeEE
Q 004140 330 GLCHPKMAMVIDDRCKVWEDKDQPRVHV 357 (771)
Q Consensus 330 g~~d~~~VVIIDDR~dVW~~~~~NlI~V 357 (771)
-++.++.+++|+|+..=.....+-++..
T Consensus 161 ~~~~~~~~~~igDs~~Di~aA~~aG~~~ 188 (222)
T PRK10826 161 LGVDPLTCVALEDSFNGMIAAKAARMRS 188 (222)
T ss_pred cCCCHHHeEEEcCChhhHHHHHHcCCEE
Confidence 3357889999999987555444445543
No 98
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=86.12 E-value=1.5 Score=43.50 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=12.5
Q ss_pred cceEEEEeCCcceeecc
Q 004140 136 RCLAIVFDLDETLIVAN 152 (771)
Q Consensus 136 r~L~lV~DLDeTLi~A~ 152 (771)
|+|-|.+|+||||....
T Consensus 1 ~~i~I~iDiDgVLad~~ 17 (191)
T PF06941_consen 1 RKIRIAIDIDGVLADFN 17 (191)
T ss_dssp --EEEEEESBTTTB-HH
T ss_pred CCcEEEEECCCCCcccH
Confidence 67889999999998764
No 99
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=85.37 E-value=3.3 Score=40.07 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=46.9
Q ss_pred EecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhcccCCCCCC
Q 004140 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPK 335 (771)
Q Consensus 256 KLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~KsL~rLf~~g~~d~~ 335 (771)
.++|+. +.+.|+ .+.+.+.|.|+..+..+..+++.+.-+ .+|.. .+ ....-+..++..-+.+++
T Consensus 30 ~~~~~~--~i~~Lk---~~G~~i~IvTn~~~~~~~~~l~~~gi~-~~~~~---------~~-~k~~~~~~~~~~~~~~~~ 93 (154)
T TIGR01670 30 NVRDGY--GIRCAL---KSGIEVAIITGRKAKLVEDRCKTLGIT-HLYQG---------QS-NKLIAFSDILEKLALAPE 93 (154)
T ss_pred echhHH--HHHHHH---HCCCEEEEEECCCCHHHHHHHHHcCCC-EEEec---------cc-chHHHHHHHHHHcCCCHH
Confidence 555653 678886 578999999999999999999887654 33331 11 112223333332224677
Q ss_pred eEEEEeCCc
Q 004140 336 MAMVIDDRC 344 (771)
Q Consensus 336 ~VVIIDDR~ 344 (771)
.++.|.|+.
T Consensus 94 ~~~~vGDs~ 102 (154)
T TIGR01670 94 NVAYIGDDL 102 (154)
T ss_pred HEEEECCCH
Confidence 888898875
No 100
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=85.35 E-value=5.4 Score=42.35 Aligned_cols=73 Identities=22% Similarity=0.161 Sum_probs=40.2
Q ss_pred cCcEEEEEEeCCchHHHHHHHHhhCCCCCcccccc--------------ccCceEeecCC------C--cccHhhhcccC
Q 004140 273 RKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQ--------------LLDRVVCVKSG------S--RKSLLNVFQRG 330 (771)
Q Consensus 273 sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~--------------l~~RIisresg------~--~KsL~rLf~~g 330 (771)
.+..-++.+|.....|...-++-|---|-=|...- ...+-.+..+| . -..|..+|...
T Consensus 95 ~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~ 174 (252)
T PF11019_consen 95 NKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKI 174 (252)
T ss_pred HCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHc
Confidence 35577888888887777666664322222122111 11222222222 1 23466666544
Q ss_pred CCCCCeEEEEeCCcc
Q 004140 331 LCHPKMAMVIDDRCK 345 (771)
Q Consensus 331 ~~d~~~VVIIDDR~d 345 (771)
+-.++.+|+|||+.+
T Consensus 175 ~~~pk~IIfIDD~~~ 189 (252)
T PF11019_consen 175 NQSPKKIIFIDDNKE 189 (252)
T ss_pred CCCCCeEEEEeCCHH
Confidence 457999999999865
No 101
>PRK09449 dUMP phosphatase; Provisional
Probab=84.96 E-value=1.7 Score=43.35 Aligned_cols=90 Identities=10% Similarity=0.062 Sum_probs=56.5
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCccc----Hhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKS----LLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~Ks----L~rLf~~ 329 (771)
+++.|++.++.+.|+ +.|-+.|.|++.+.++..+++.++-.+ +| +.|++.++ +..|- +..++..
T Consensus 94 ~~~~~g~~~~L~~L~----~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~f------d~v~~~~~~~~~KP~p~~~~~~~~~ 162 (224)
T PRK09449 94 CTPLPGAVELLNALR----GKVKMGIITNGFTELQQVRLERTGLRD-YF------DLLVISEQVGVAKPDVAIFDYALEQ 162 (224)
T ss_pred CccCccHHHHHHHHH----hCCeEEEEeCCcHHHHHHHHHhCChHH-Hc------CEEEEECccCCCCCCHHHHHHHHHH
Confidence 467899666666663 459999999999999999888765432 33 46666543 32221 2222222
Q ss_pred CCC-CCCeEEEEeCCc--cccccCCCCCeE
Q 004140 330 GLC-HPKMAMVIDDRC--KVWEDKDQPRVH 356 (771)
Q Consensus 330 g~~-d~~~VVIIDDR~--dVW~~~~~NlI~ 356 (771)
-++ +++.+++|+|+. |+=..+.. ++.
T Consensus 163 ~~~~~~~~~~~vgD~~~~Di~~A~~a-G~~ 191 (224)
T PRK09449 163 MGNPDRSRVLMVGDNLHSDILGGINA-GID 191 (224)
T ss_pred cCCCCcccEEEEcCCcHHHHHHHHHC-CCc
Confidence 112 346899999984 66665554 444
No 102
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=84.96 E-value=1.8 Score=44.89 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=51.1
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCC--CCccccccccCceEeecCCCcccHhhhcccCCC
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPE--GHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLC 332 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPd--g~lF~~r~l~~RIisresg~~KsL~rLf~~g~~ 332 (771)
.++.|++.++++.|+ ++-|.++|||++++.+...+++.++-. ..+|.. +++.+++.+. +...+..++..-++
T Consensus 94 ~~lypgv~e~L~~Lk---~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~--~fd~~~g~KP-~p~~y~~i~~~lgv 167 (220)
T TIGR01691 94 SHLYPDVPPALEAWL---QLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSG--YFDTTVGLKT-EAQSYVKIAGQLGS 167 (220)
T ss_pred cCcCcCHHHHHHHHH---HCCCEEEEEeCCCHHHHHHHHhhccccchhhhcce--EEEeCcccCC-CHHHHHHHHHHhCc
Confidence 467799666666664 467999999999999999888765311 123431 1122223221 11223333332235
Q ss_pred CCCeEEEEeCCcc
Q 004140 333 HPKMAMVIDDRCK 345 (771)
Q Consensus 333 d~~~VVIIDDR~d 345 (771)
.++.+++|+|+..
T Consensus 168 ~p~e~lfVgDs~~ 180 (220)
T TIGR01691 168 PPREILFLSDIIN 180 (220)
T ss_pred ChhHEEEEeCCHH
Confidence 7899999999864
No 103
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=84.64 E-value=0.9 Score=47.34 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=23.8
Q ss_pred ceEEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 004140 137 CLAIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (771)
Q Consensus 137 ~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (771)
...|++||||||+.... ..-+..+++++++....
T Consensus 7 ~~lI~~DlDGTLL~~~~-~i~~~~~~ai~~l~~~G 40 (271)
T PRK03669 7 PLLIFTDLDGTLLDSHT-YDWQPAAPWLTRLREAQ 40 (271)
T ss_pred CeEEEEeCccCCcCCCC-cCcHHHHHHHHHHHHcC
Confidence 46788999999998643 22366777887766544
No 104
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=84.00 E-value=0.91 Score=44.40 Aligned_cols=65 Identities=25% Similarity=0.363 Sum_probs=37.9
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhhcCCchhhhhc-hhHHHHHhhhhHHHHHhhhccceeeeCCeEE
Q 004140 140 IVFDLDETLIVANTMKSFEDRIEALRSWIAREPDQIRASG-MSAELKRYMDDRTLLKQYTENDCVMDNGKVF 210 (771)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~~dP~~~~~-~~~E~kr~~~D~~lL~q~~~~d~V~~nG~~~ 210 (771)
|++||||||+..... --+.-+++|++|......-.-.+| -..+++++..... +....+..||-.+
T Consensus 1 i~~DlDGTLl~~~~~-i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~-----~~~~~I~~nGa~i 66 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELG-----IDDYFICSNGALI 66 (254)
T ss_dssp EEEECCTTTCSTTSS-SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTT-----HCSEEEEGGGTEE
T ss_pred cEEEECCceecCCCe-eCHHHHHHHHhhcccceEEEEEccCccccccccccccc-----chhhhccccccee
Confidence 689999999997765 346778889988865521100001 1234555432111 2234577788765
No 105
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=83.63 E-value=1.7 Score=47.57 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=34.9
Q ss_pred HHHHHHHhccCcE-EEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeec
Q 004140 264 LRSYLIAKGRKRF-EVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVK 316 (771)
Q Consensus 264 LreFL~a~~sk~F-ElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisre 316 (771)
+.+.|. ++.+.+ -|++|.-|+++|+..-++.++-. .+|. =|+|..
T Consensus 147 v~~sL~-~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~-~~Fd------~ii~~G 192 (297)
T PF05152_consen 147 VYDSLR-ELKEQGCVLVLWSYGNREHVRHSLKELKLE-GYFD------IIICGG 192 (297)
T ss_pred HHHHHH-HHHHcCCEEEEecCCCHHHHHHHHHHhCCc-cccE------EEEeCC
Confidence 666776 666666 99999999999999999998765 4454 566653
No 106
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=83.11 E-value=3.2 Score=40.11 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=64.2
Q ss_pred cCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEeC---CeeEEEEec-C
Q 004140 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIG---DEEIHLVAM-P 107 (771)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~~---~~elhLva~-~ 107 (771)
.-...|+|.+|-+.+ ..|| .|.+....+-...+........++..|+..|.+.+|.||++.- +.+-+|+|+ |
T Consensus 33 ~~~~~l~ilgF~~~~-~i~~---~~~~~~s~~i~P~~~~~~~s~~a~~aL~~am~~~~~~aiar~v~r~~~~p~l~aL~P 108 (140)
T smart00559 33 KSEPGLELLGFKPLS-SLPP---YYFLRPSYFLVPDDKSVIGSTKAFSALVEALLETDKIAIARYTLRTKSNPRLVALRP 108 (140)
T ss_pred cCCCeEEEEeecChH-HCCH---hHccCCcEEEeeCCcccchhHHHHHHHHHHHHhcCCEEEEEEEEcCCCCCEEEEEEe
Confidence 456899999999887 3444 3666655555555555555688999999999999999999982 347899996 4
Q ss_pred CCC-CCCceEeeeecC
Q 004140 108 SKQ-KKFPCFWCYSVS 122 (771)
Q Consensus 108 ~~~-~~~p~F~~~~~~ 122 (771)
... ....|||...+|
T Consensus 109 ~~~~~~~~~l~~~~Lp 124 (140)
T smart00559 109 YDEEDDGEGLVLVQLP 124 (140)
T ss_pred eecccCCCcEEEEecC
Confidence 332 223599988888
No 107
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=82.74 E-value=1.4 Score=45.26 Aligned_cols=30 Identities=30% Similarity=0.193 Sum_probs=22.2
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 004140 140 IVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (771)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (771)
+++||||||++... ..+..+++++++....
T Consensus 2 i~~DlDGTLl~~~~--~~~~~~~ai~~l~~~G 31 (225)
T TIGR02461 2 IFTDLDGTLLPPGY--EPGPAREALEELKDLG 31 (225)
T ss_pred EEEeCCCCCcCCCC--CchHHHHHHHHHHHCC
Confidence 78999999999543 3556778887766554
No 108
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=82.62 E-value=3.1 Score=41.00 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=49.9
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCC---------------chHHHHHHHHhhCCCCCccccccccCceEe----
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMA---------------ERDYALEMWRLLDPEGHLIGSKQLLDRVVC---- 314 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmg---------------tR~YA~~Il~LLDPdg~lF~~r~l~~RIis---- 314 (771)
.+++-|++.++++.|+ .+.|.++|.||. .+.|+..+++.++-. |. +-++|
T Consensus 27 ~~~~~pgv~e~L~~L~---~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd-----~ii~~~~~~ 95 (161)
T TIGR01261 27 KLRFEKGVIPALLKLK---KAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII---FD-----DVLICPHFP 95 (161)
T ss_pred HeeECCCHHHHHHHHH---HCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc---ee-----EEEECCCCC
Confidence 3466699777777775 467999999996 356777777776664 43 22333
Q ss_pred ecC-CCcc----cHhhhcccCCCCCCeEEEEeCCc
Q 004140 315 VKS-GSRK----SLLNVFQRGLCHPKMAMVIDDRC 344 (771)
Q Consensus 315 res-g~~K----sL~rLf~~g~~d~~~VVIIDDR~ 344 (771)
.++ +..| -+..++..-.++++.+++|+|+.
T Consensus 96 ~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~ 130 (161)
T TIGR01261 96 DDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRE 130 (161)
T ss_pred CCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCH
Confidence 121 1122 23344433335788999999984
No 109
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=81.98 E-value=5.7 Score=49.40 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHhCCCCceEEEEeeeC-CCceEEEEEEECCEEE-EEEeeCCHHHHHHHHHHHHHHHHH
Q 004140 626 LSIGVLQEIGKRCSSKVEFRSVVSTS-KDLQFSVEVLFTGEKI-GVGMGKTRKDAQQQAAENALHYLA 691 (771)
Q Consensus 626 DyKS~LQE~aQK~~~~peYeiv~~sG-H~~~FtVeV~I~Gek~-G~G~GkSKKEAEQ~AAK~ALe~L~ 691 (771)
|-|..|-.||-|+.-.|+|.+-.+.+ ....|.++|.+.+..+ +.|....||.|+.+||+.-.+.|.
T Consensus 2 d~k~fly~~~~k~~~~p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylv 69 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYGPTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLV 69 (1282)
T ss_pred cHHHHHHHHHhhhccCcceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhh
Confidence 66899999999997779999954444 7778999999988654 345556799999999999999885
No 110
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=81.68 E-value=4.2 Score=40.46 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=40.3
Q ss_pred HHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhcccCCCCCCeEEEEeCC
Q 004140 264 LRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKMAMVIDDR 343 (771)
Q Consensus 264 LreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~KsL~rLf~~g~~d~~~VVIIDDR 343 (771)
..+.|+ .+.+.+.|.|+....++..+++.+.-+ .+|.. .+ .....|..++..-+..++.++.|.|.
T Consensus 56 ~i~~L~---~~Gi~v~I~T~~~~~~v~~~l~~lgl~-~~f~g---------~~-~k~~~l~~~~~~~gl~~~ev~~VGDs 121 (183)
T PRK09484 56 GIRCLL---TSGIEVAIITGRKSKLVEDRMTTLGIT-HLYQG---------QS-NKLIAFSDLLEKLAIAPEQVAYIGDD 121 (183)
T ss_pred HHHHHH---HCCCEEEEEeCCCcHHHHHHHHHcCCc-eeecC---------CC-cHHHHHHHHHHHhCCCHHHEEEECCC
Confidence 446665 467899999999999999999887644 23331 01 11122333333222456778888776
Q ss_pred c
Q 004140 344 C 344 (771)
Q Consensus 344 ~ 344 (771)
.
T Consensus 122 ~ 122 (183)
T PRK09484 122 L 122 (183)
T ss_pred H
Confidence 4
No 111
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=81.58 E-value=0.98 Score=46.42 Aligned_cols=14 Identities=50% Similarity=0.596 Sum_probs=12.5
Q ss_pred ceEEEEeCCcceee
Q 004140 137 CLAIVFDLDETLIV 150 (771)
Q Consensus 137 ~L~lV~DLDeTLi~ 150 (771)
++.|+.||||||+.
T Consensus 1 ~~li~tDlDGTLl~ 14 (249)
T TIGR01485 1 RLLLVSDLDNTLVD 14 (249)
T ss_pred CeEEEEcCCCcCcC
Confidence 47899999999996
No 112
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=81.40 E-value=4.7 Score=42.17 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=68.2
Q ss_pred cCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEeC---CeeEEEEe-cC
Q 004140 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIG---DEEIHLVA-MP 107 (771)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~~---~~elhLva-~~ 107 (771)
.-..+|+|.+|-+.+ ..++ .|.+....+....++ ......++..|+..|.+.+|.||++.- +...+||| +|
T Consensus 86 ~~~~~l~ilgF~~~~-~i~~---~~~~~~s~~l~P~~~-~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~P 160 (272)
T cd00594 86 ETSKGLDILGFVPAS-EIPP---YYFDKESYYLVPDDS-DKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALRP 160 (272)
T ss_pred CCCCeEEEEeEechH-hCCc---ceecCCcEEEEcCCC-CcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEec
Confidence 456899999999887 3443 366665455555454 556688999999999999999999883 45889998 56
Q ss_pred CCCCCCceEeeeecCcchhHh
Q 004140 108 SKQKKFPCFWCYSVSSGLYNS 128 (771)
Q Consensus 108 ~~~~~~p~F~~~~~~~g~y~~ 128 (771)
......+|||...+| ..|.
T Consensus 161 ~~~~~~~gl~l~~LP--fadD 179 (272)
T cd00594 161 QEEEDPEGLVLVTLP--FADD 179 (272)
T ss_pred cccCCCCEEEEEccC--Cchh
Confidence 665677899999999 4553
No 113
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=80.48 E-value=4.2 Score=37.44 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=52.9
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCc--------hHHHHHHHHhhCCCCCccccccccCceEeecC--CCcccHh
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAE--------RDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS--GSRKSLL 324 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgt--------R~YA~~Il~LLDPdg~lF~~r~l~~RIisres--g~~KsL~ 324 (771)
.++.|++.++.++|+ .+.|.++|.|++. +.++.++++.++-. ++. -++|-.. ....-+.
T Consensus 24 ~~~~~~v~~~l~~L~---~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~~------~~~~~~~~KP~~~~~~ 92 (132)
T TIGR01662 24 RILYPEVPDALAELK---EAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--IDV------LYACPHCRKPKPGMFL 92 (132)
T ss_pred heeCCCHHHHHHHHH---HCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EEE------EEECCCCCCCChHHHH
Confidence 356699777777775 4679999999999 88888888877543 111 1111100 0111223
Q ss_pred hhcccC-CCCCCeEEEEeCC--ccccccCCC
Q 004140 325 NVFQRG-LCHPKMAMVIDDR--CKVWEDKDQ 352 (771)
Q Consensus 325 rLf~~g-~~d~~~VVIIDDR--~dVW~~~~~ 352 (771)
.+...- ..+++.+|.|+|+ .|+......
T Consensus 93 ~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~ 123 (132)
T TIGR01662 93 EALKRFNEIDPEESVYVGDQDLTDLQAAKRA 123 (132)
T ss_pred HHHHHcCCCChhheEEEcCCCcccHHHHHHC
Confidence 333322 2478899999994 567665543
No 114
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=79.29 E-value=2.3 Score=42.19 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEeCCcceeecccccch-HHHHHHHHHHhhcC
Q 004140 140 IVFDLDETLIVANTMKSF-EDRIEALRSWIARE 171 (771)
Q Consensus 140 lV~DLDeTLi~A~t~~~~-e~ri~~l~~w~~~~ 171 (771)
|++||||||+... +.+ +..+++|++|....
T Consensus 1 i~~DlDGTLl~~~--~~i~~~~~~al~~l~~~G 31 (225)
T TIGR01482 1 IASDIDGTLTDPN--RAINESALEAIRKAESVG 31 (225)
T ss_pred CeEeccCccCCCC--cccCHHHHHHHHHHHHCC
Confidence 5899999999753 223 33466777766544
No 115
>PF14954 LIX1: Limb expression 1
Probab=79.28 E-value=3 Score=44.19 Aligned_cols=63 Identities=25% Similarity=0.210 Sum_probs=44.7
Q ss_pred CChHHHHHHHHHhC---------CCCceEEEEeeeCCCceEEEEEEECCE-EEEE-EeeCCHHHHHHHHHHHHHHH
Q 004140 625 YLSIGVLQEIGKRC---------SSKVEFRSVVSTSKDLQFSVEVLFTGE-KIGV-GMGKTRKDAQQQAAENALHY 689 (771)
Q Consensus 625 ~DyKS~LQE~aQK~---------~~~peYeiv~~sGH~~~FtVeV~I~Ge-k~G~-G~GkSKKEAEQ~AAK~ALe~ 689 (771)
.|-...|||+=|.+ +..+.|+.+-. ..+.|.+-|.+-|- -+|. -.-.||-||++.|||.||-+
T Consensus 21 vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps--~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 21 VNVVEALQEFWQMKQSRGADLKSEALVVYESVPS--PSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred chHHHHHHHHHHHHHhccccCCCCCeeeeeccCC--CCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHH
Confidence 47789999966543 23466776532 56889999998663 2332 23369999999999999853
No 116
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=78.14 E-value=1.4 Score=42.52 Aligned_cols=88 Identities=18% Similarity=0.097 Sum_probs=53.7
Q ss_pred ecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecCC-Cccc----HhhhcccCC
Q 004140 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRKS----LLNVFQRGL 331 (771)
Q Consensus 257 LRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~~Ks----L~rLf~~g~ 331 (771)
+-|+. ++.+.|+ +.+.+.|.|++.+.++..+++.+.=. .+| +.|+|.++. ..|. +..++..-+
T Consensus 89 ~~~~~-e~L~~L~----~~~~l~I~T~~~~~~~~~~l~~~~l~-~~f------d~i~~~~~~~~~KP~p~~~~~~~~~~~ 156 (188)
T PRK10725 89 PLPLI-EVVKAWH----GRRPMAVGTGSESAIAEALLAHLGLR-RYF------DAVVAADDVQHHKPAPDTFLRCAQLMG 156 (188)
T ss_pred CccHH-HHHHHHH----hCCCEEEEcCCchHHHHHHHHhCCcH-hHc------eEEEehhhccCCCCChHHHHHHHHHcC
Confidence 34652 3444453 44799999999999999999986533 234 467777542 2232 344433323
Q ss_pred CCCCeEEEEeCCccccccCCCCCeE
Q 004140 332 CHPKMAMVIDDRCKVWEDKDQPRVH 356 (771)
Q Consensus 332 ~d~~~VVIIDDR~dVW~~~~~NlI~ 356 (771)
+.++.+|+|||+..=.....+.++.
T Consensus 157 ~~~~~~l~igDs~~di~aA~~aG~~ 181 (188)
T PRK10725 157 VQPTQCVVFEDADFGIQAARAAGMD 181 (188)
T ss_pred CCHHHeEEEeccHhhHHHHHHCCCE
Confidence 5678899999985433333333443
No 117
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=77.69 E-value=0.74 Score=52.47 Aligned_cols=65 Identities=23% Similarity=0.188 Sum_probs=57.3
Q ss_pred CChHHHHHHHHHhC-CCCceEEEEeeeCCCceEEEEEEECCEEEEEEee-CCHHHHHHHHHHHHHHHHH
Q 004140 625 YLSIGVLQEIGKRC-SSKVEFRSVVSTSKDLQFSVEVLFTGEKIGVGMG-KTRKDAQQQAAENALHYLA 691 (771)
Q Consensus 625 ~DyKS~LQE~aQK~-~~~peYeiv~~sGH~~~FtVeV~I~Gek~G~G~G-kSKKEAEQ~AAK~ALe~L~ 691 (771)
.++|..|-.||-+. ...|.|+++.. .++.|.+.+.+.|++|..+.+ .++|.|+|.||..+|.+..
T Consensus 375 ~~~k~~l~~~~~~~~~~~~~ye~~~~--~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~ 441 (477)
T KOG2334|consen 375 DTPKMVLADLCVKTKANGPVYETVQR--TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSN 441 (477)
T ss_pred CCHHHHHHHhhhhhcCCCcchhhhhh--hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcC
Confidence 58899999999998 66799998754 567899999999999998888 7999999999999998764
No 118
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=76.57 E-value=3.3 Score=39.67 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=47.5
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc----cHhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK----SLLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~K----sL~rLf~~ 329 (771)
+++.|++.++.++|+ ...|.+.|.|++ .++..+++.++=+ .+|. .+++.++ +..| -+..+...
T Consensus 87 ~~~~~g~~~~l~~l~---~~g~~i~i~S~~--~~~~~~l~~~~l~-~~f~------~v~~~~~~~~~kp~~~~~~~~~~~ 154 (185)
T TIGR02009 87 AEVLPGIENFLKRLK---KKGIAVGLGSSS--KNADRILAKLGLT-DYFD------AIVDADEVKEGKPHPETFLLAAEL 154 (185)
T ss_pred CCCCcCHHHHHHHHH---HcCCeEEEEeCc--hhHHHHHHHcChH-HHCC------EeeehhhCCCCCCChHHHHHHHHH
Confidence 577899666666665 356899999988 7788887765432 2343 4444432 1112 12333322
Q ss_pred CCCCCCeEEEEeCCc
Q 004140 330 GLCHPKMAMVIDDRC 344 (771)
Q Consensus 330 g~~d~~~VVIIDDR~ 344 (771)
-.+.++.+|+|+|+.
T Consensus 155 ~~~~~~~~v~IgD~~ 169 (185)
T TIGR02009 155 LGVSPNECVVFEDAL 169 (185)
T ss_pred cCCCHHHeEEEeCcH
Confidence 224678899999985
No 119
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=75.72 E-value=7 Score=37.27 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=30.3
Q ss_pred EecCChHHHHHHHHHhccCcEEEEEEeCCch---------------HHHHHHHHhhCC
Q 004140 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMAER---------------DYALEMWRLLDP 298 (771)
Q Consensus 256 KLRPgweeLreFL~a~~sk~FElyVyTmgtR---------------~YA~~Il~LLDP 298 (771)
++.|++.++.++|+ .+-|.+.|.|++.+ .++..+++.++-
T Consensus 27 ~~~~g~~~~l~~Lk---~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 81 (147)
T TIGR01656 27 QLRPGAVPALLTLR---AAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGV 81 (147)
T ss_pred EEcCChHHHHHHHH---HCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 56799777777776 68899999999885 566666766554
No 120
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=75.19 E-value=6.3 Score=42.19 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCC
Q 004140 259 PAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDP 298 (771)
Q Consensus 259 PgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDP 298 (771)
||+-++..|++ +.-. ||+.|-.-++.-+-+++++..+=
T Consensus 87 Pgmv~lik~~a-k~g~-~eliIVSDaNsfFIe~~Lea~~~ 124 (256)
T KOG3120|consen 87 PGMVRLIKSAA-KLGC-FELIIVSDANSFFIEEILEAAGI 124 (256)
T ss_pred ccHHHHHHHHH-hCCC-ceEEEEecCchhHHHHHHHHccH
Confidence 88888999997 4434 99999999999999999987653
No 121
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=74.64 E-value=2.5 Score=44.11 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhh
Q 004140 259 PAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLL 296 (771)
Q Consensus 259 PgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LL 296 (771)
|+.-+|..++. +.-++|++.|.=....-..-++-|
T Consensus 118 p~a~~l~~~~~---~~G~~V~~iT~R~~~~r~~T~~nL 152 (229)
T PF03767_consen 118 PGALELYNYAR---SRGVKVFFITGRPESQREATEKNL 152 (229)
T ss_dssp TTHHHHHHHHH---HTTEEEEEEEEEETTCHHHHHHHH
T ss_pred HHHHHHHHHHH---HCCCeEEEEecCCchhHHHHHHHH
Confidence 77444555554 577999999986666444443433
No 122
>PF02735 Ku: Ku70/Ku80 beta-barrel domain; InterPro: IPR006164 The Ku heterodimer is composed of Ku70 and Ku80 (or Ku86), 70 kDa and 80 kDa subunits of an ATP-dependent DNA helicase, which contributes to genomic integrity through its ability to bind DNA double-stranded breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-binding beta-barrel domain and is found in both the Ku70 and Ku80 proteins. Ku makes only a few contacts with the sugar-phosphate backbone, and none with the DNA bases, but it fits sterically to major and minor groove contours forming a ring that encircles duplex DNA, cradling two full turns of the DNA molecule. By forming a bridge between the broken DNA ends, Ku acts to structurally support and align the DNA ends, to protect them from degradation, and to prevent promiscuous binding to unbroken DNA. Ku effectively aligns the DNA, while still allowing access of polymerases, nucleases and ligases to the broken DNA ends to promote end joining [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0006303 double-strand break repair via nonhomologous end joining; PDB: 1JEY_B 1JEQ_B.
Probab=74.47 E-value=3.5 Score=41.52 Aligned_cols=87 Identities=14% Similarity=0.041 Sum_probs=58.3
Q ss_pred cCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEeC---CeeEEEEecCC
Q 004140 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIG---DEEIHLVAMPS 108 (771)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~~---~~elhLva~~~ 108 (771)
+...+|+|.+|-+.+ ..+| .|.+....+-...+.+.......+..|+..|.+.+|.||++.- +.+-+|+|+-+
T Consensus 80 ~~~~~l~ilGF~~~~-~i~~---~~~~~~~~~i~p~~~~~~~s~~~f~aL~~am~~~~~vaI~r~v~r~~~~p~l~aL~P 155 (200)
T PF02735_consen 80 ETSPGLEILGFVPRS-NIPP---YYFMGESYFIVPDEKSGEGSAKAFSALVQAMLEKNKVAIARYVLRSNSRPRLVALIP 155 (200)
T ss_dssp -S-SEEEEEEEEEGG-GS-C---CG-ECEEEEEEEETTTECCHHHHHHHHHHHHHHCTEEEEEEEESSTTS--EEEEEEE
T ss_pred cCCCeEEEEEEEcch-hCCc---eEEeCCcEEEEECCCCcchhHHHHHHHHHHHHhcCcEEEEEEEEcCCCCcEEEEEEE
Confidence 455899999999877 3443 4556665565555555556688999999999999999999983 45888998543
Q ss_pred CC-C--CCceEeeeecC
Q 004140 109 KQ-K--KFPCFWCYSVS 122 (771)
Q Consensus 109 ~~-~--~~p~F~~~~~~ 122 (771)
.. . ..+||+...+|
T Consensus 156 ~~~~~~~~~gl~~~~Lp 172 (200)
T PF02735_consen 156 QIEESDTPEGLVLIRLP 172 (200)
T ss_dssp EE-CEEC-CEEEEEE--
T ss_pred eccccCCCCeEEEEEcC
Confidence 33 2 24788888888
No 123
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=74.43 E-value=3.3 Score=42.61 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=22.2
Q ss_pred ceEEEEeCCcceeecccccchHHHHHHHHHHhh
Q 004140 137 CLAIVFDLDETLIVANTMKSFEDRIEALRSWIA 169 (771)
Q Consensus 137 ~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~ 169 (771)
.-.|++||||||+..... .-+.-+++|+....
T Consensus 3 ~kli~~DlDGTLl~~~~~-i~~~~~~al~~~~~ 34 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT-ISPETKEALARLRE 34 (264)
T ss_pred eeEEEEcCCCCccCCCCc-cCHHHHHHHHHHHH
Confidence 357899999999999875 33445566654333
No 124
>cd00788 KU70 Ku-core domain, Ku70 subfamily; Ku70 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in the nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=74.14 E-value=9.5 Score=40.92 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=64.8
Q ss_pred cCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEe---CCeeEEEEec-C
Q 004140 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVI---GDEEIHLVAM-P 107 (771)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~---~~~elhLva~-~ 107 (771)
.-..+|+|.+|-+.+ .-+ -.|.+....+-...+........++..|+.+|.+.+|.||++. .+....|||+ |
T Consensus 92 ~~~~~l~ilgF~~~~-~i~---~~~~~~~s~fl~P~~~~~~gs~~af~aL~~am~~~~kvaIa~~v~r~~~~p~l~aL~P 167 (287)
T cd00788 92 FGEPGLRLIGFKPRS-TLK---PYHNIKKSYFIYPDESDYKGSTRLFAALLRSCLKKNKVAICWYILRKNSPPRLVALVP 167 (287)
T ss_pred cCCCceEEEeeccHH-HCC---hhhccCCceeEecCcccccCcHHHHHHHHHHHHhcCcEEEEEEEecCCCCCEEEEEec
Confidence 346899999999877 222 2466665455555554444567899999999999999999988 3346799985 5
Q ss_pred CCCC--------CCceEeeeecCcchhHh
Q 004140 108 SKQK--------KFPCFWCYSVSSGLYNS 128 (771)
Q Consensus 108 ~~~~--------~~p~F~~~~~~~g~y~~ 128 (771)
.... ..+|||...+| ..|.
T Consensus 168 ~~~~~~~~~~~~~~~gl~l~~LP--fadD 194 (287)
T cd00788 168 QEEELDEPDGQVLPPGFHLVPLP--FADD 194 (287)
T ss_pred cccccCCCCCccCCCcEEEEecC--chhh
Confidence 3322 15799999998 5554
No 125
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=73.70 E-value=3.3 Score=40.50 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=36.4
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCcccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGS 305 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~ 305 (771)
.+++|++.++.+.|+ ++-+.++|.|++.+.|+..+++.+.-+. +|+.
T Consensus 86 ~~~~~~~~~~l~~l~---~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~ 132 (202)
T TIGR01490 86 SILYPEARDLIRWHK---AEGHTIVLVSASLTILVKPLARILGIDN-AIGT 132 (202)
T ss_pred HhccHHHHHHHHHHH---HCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEec
Confidence 357899666666665 4678999999999999999999877653 5663
No 126
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=71.88 E-value=5.6 Score=43.85 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=38.7
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhhcCCchhh--hhchhHHHHHhhhhHHHHHhhhccceeeeCCeEEE
Q 004140 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIAREPDQIR--ASGMSAELKRYMDDRTLLKQYTENDCVMDNGKVFK 211 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~~dP~~--~~~~~~E~kr~~~D~~lL~q~~~~d~V~~nG~~~~ 211 (771)
.|++||||||+...+. ..++.+++|.+..... -|.- ..-...|++.+.+... ++.-.++.||-.+-
T Consensus 3 LIftDLDGTLLd~~~~-~~~~a~~aL~~Lk~~G-I~vVlaTGRt~~ev~~l~~~Lg-----l~~p~I~eNGA~I~ 70 (302)
T PRK12702 3 LVLSSLDGSLLDLEFN-SYGAARQALAALERRS-IPLVLYSLRTRAQLEHLCRQLR-----LEHPFICEDGSAIY 70 (302)
T ss_pred EEEEeCCCCCcCCCCc-CCHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHhC-----CCCeEEEeCCcEEE
Confidence 5788999999987653 4677777776655443 2211 1113466666654322 11236888987653
No 127
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=71.18 E-value=4 Score=40.77 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=21.9
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 004140 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (771)
.|++||||||+..... --+..+++|+++....
T Consensus 5 li~~DlDGTLl~~~~~-i~~~~~~al~~l~~~G 36 (230)
T PRK01158 5 AIAIDIDGTITDKDRR-LSLKAVEAIRKAEKLG 36 (230)
T ss_pred EEEEecCCCcCCCCCc-cCHHHHHHHHHHHHCC
Confidence 6789999999965431 1255677887776444
No 128
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=71.14 E-value=2 Score=41.43 Aligned_cols=14 Identities=29% Similarity=0.750 Sum_probs=12.5
Q ss_pred EEEEeCCcceeecc
Q 004140 139 AIVFDLDETLIVAN 152 (771)
Q Consensus 139 ~lV~DLDeTLi~A~ 152 (771)
+++||+|||||.+.
T Consensus 7 ~viFD~DGTLiDs~ 20 (188)
T PRK10725 7 GLIFDMDGTILDTE 20 (188)
T ss_pred EEEEcCCCcCccCH
Confidence 58999999999975
No 129
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=70.64 E-value=12 Score=43.92 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=42.5
Q ss_pred cCChHHHHHHHHHhccCcEEEEEEeCCch------------HHHHHHHHhhCCCCCccccccccCceEeecCC-Cccc--
Q 004140 258 RPAWEDLRSYLIAKGRKRFEVYVCTMAER------------DYALEMWRLLDPEGHLIGSKQLLDRVVCVKSG-SRKS-- 322 (771)
Q Consensus 258 RPgweeLreFL~a~~sk~FElyVyTmgtR------------~YA~~Il~LLDPdg~lF~~r~l~~RIisresg-~~Ks-- 322 (771)
-|++.+++..|. ..-|.|.|+||-.. .++..|++.|+-. |. -++|-+.+ .+|-
T Consensus 199 ~pgV~e~L~~L~---~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip---fd------viia~~~~~~RKP~p 266 (526)
T TIGR01663 199 FPEIPEKLKELE---ADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP---FQ------VFIAIGAGFYRKPLT 266 (526)
T ss_pred ccCHHHHHHHHH---HCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc---eE------EEEeCCCCCCCCCCH
Confidence 388555555554 57799999999766 4577777766532 22 33343322 2231
Q ss_pred --Hhhh---cc-cCCCCCCeEEEEeCCc
Q 004140 323 --LLNV---FQ-RGLCHPKMAMVIDDRC 344 (771)
Q Consensus 323 --L~rL---f~-~g~~d~~~VVIIDDR~ 344 (771)
+..+ +. +...+++.+++|.|+.
T Consensus 267 Gm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 267 GMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred HHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 1111 21 1124678889998874
No 130
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=70.18 E-value=2.8 Score=44.32 Aligned_cols=93 Identities=11% Similarity=0.013 Sum_probs=47.3
Q ss_pred HHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeec-CCCc------cc--HhhhcccCCCCC
Q 004140 264 LRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVK-SGSR------KS--LLNVFQRGLCHP 334 (771)
Q Consensus 264 LreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisre-sg~~------Ks--L~rLf~~g~~d~ 334 (771)
..+|++.-.++-++|++.|.=.........+-|.-.| |.. . ++++-|. ++.. |+ ...+-.. .-
T Consensus 125 al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G--~~~--~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~---GY 196 (229)
T TIGR01675 125 GLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAG--FTG--W-KHLILRGLEDSNKTVVTYKSEVRKSLMEE---GY 196 (229)
T ss_pred HHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcC--CCC--c-CeeeecCCCCCCchHhHHHHHHHHHHHhC---Cc
Confidence 4455541126789999999988777655655443333 220 0 3444443 2222 32 1122222 35
Q ss_pred CeEEEEeCCccccccCCC-CCeEEecccCCC
Q 004140 335 KMAMVIDDRCKVWEDKDQ-PRVHVVPAFTPY 364 (771)
Q Consensus 335 ~~VVIIDDR~dVW~~~~~-NlI~VVp~Y~py 364 (771)
+.+..|||...=...... ....-.|=.|||
T Consensus 197 rIv~~iGDq~sDl~G~~~~~RtFKLPNPmYy 227 (229)
T TIGR01675 197 RIWGNIGDQWSDLLGSPPGRRTFKLPNPMYY 227 (229)
T ss_pred eEEEEECCChHHhcCCCccCceeeCCCCccc
Confidence 788889998544432222 244445655554
No 131
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=69.64 E-value=5 Score=38.78 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=11.4
Q ss_pred EEEEeCCcceeec
Q 004140 139 AIVFDLDETLIVA 151 (771)
Q Consensus 139 ~lV~DLDeTLi~A 151 (771)
.++|||||||+..
T Consensus 3 ~i~~DiDGTL~~~ 15 (126)
T TIGR01689 3 RLVMDLDNTITLT 15 (126)
T ss_pred EEEEeCCCCcccC
Confidence 6899999999865
No 132
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=69.12 E-value=12 Score=44.49 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=61.9
Q ss_pred cCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEeC---CeeEEEEecCC
Q 004140 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIG---DEEIHLVAMPS 108 (771)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~~---~~elhLva~~~ 108 (771)
+....|+|-+|-+.+. .++ .|.+.+..+-.+.+....-...++..||..|++.+|.||++.- ..-=+|||+-+
T Consensus 316 ~~~~~l~ilGF~~~s~-l~~---~~~~~~s~fi~Pde~~~~gs~~afsaL~~~l~~~~kvAI~~~v~r~~~~P~lvaL~P 391 (584)
T TIGR00578 316 FDPPGLQLMGFKPLSM-LKK---HHHLRPSLFVYPEESLVRGSTTLFSALLQKCLEKEVAALCRYISRRNQPPYFVALVP 391 (584)
T ss_pred cCCCceEEEeeccHHH-CCc---hhhcCCceEEecCCcccccHHHHHHHHHHHHHhcCcEEEEEEEecCCCCCEEEEEeC
Confidence 4568999999998873 333 4666544444444444334577899999999999999999993 34568888543
Q ss_pred CC---------CCCceEeeeecC
Q 004140 109 KQ---------KKFPCFWCYSVS 122 (771)
Q Consensus 109 ~~---------~~~p~F~~~~~~ 122 (771)
.. ...++||...+|
T Consensus 392 ~~~~~d~~~~q~~p~G~~l~~LP 414 (584)
T TIGR00578 392 QEEELDDQKIQVTPPGFHLVFLP 414 (584)
T ss_pred CcccccccCCccCCCeEEEEecC
Confidence 32 234799999998
No 133
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=68.31 E-value=5.3 Score=40.86 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=22.8
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 004140 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (771)
.|++||||||+.... .--+..+++++++....
T Consensus 5 li~~DlDGTLl~~~~-~i~~~~~~ai~~~~~~G 36 (272)
T PRK10530 5 VIALDLDGTLLTPKK-TILPESLEALARAREAG 36 (272)
T ss_pred EEEEeCCCceECCCC-ccCHHHHHHHHHHHHCC
Confidence 678999999997543 22345678888877655
No 134
>PTZ00174 phosphomannomutase; Provisional
Probab=68.04 E-value=9.3 Score=39.60 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=22.6
Q ss_pred ceEEEEeCCcceeecccccch-HHHHHHHHHHhhcC
Q 004140 137 CLAIVFDLDETLIVANTMKSF-EDRIEALRSWIARE 171 (771)
Q Consensus 137 ~L~lV~DLDeTLi~A~t~~~~-e~ri~~l~~w~~~~ 171 (771)
.-.|++||||||+.... .+ +..+++++.+....
T Consensus 5 ~klia~DlDGTLL~~~~--~is~~~~~ai~~l~~~G 38 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRN--PITQEMKDTLAKLKSKG 38 (247)
T ss_pred CeEEEEECcCCCcCCCC--CCCHHHHHHHHHHHHCC
Confidence 45689999999997653 23 33567777766554
No 135
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=67.63 E-value=3 Score=39.84 Aligned_cols=73 Identities=15% Similarity=0.067 Sum_probs=48.3
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCcc-c---Hhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRK-S---LLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~K-s---L~rLf~~ 329 (771)
+++.|+ +.++|+ .+.|.||+.+.+...+++.+.- ..+| +.|+|.+. +..| + ...++..
T Consensus 89 ~~~~~g---~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l-~~~f------d~v~~~~~~~~~KP~p~~f~~~~~~ 151 (175)
T TIGR01493 89 LPPWPD---SAAALA-------RVAILSNASHWAFDQFAQQAGL-PWYF------DRAFSVDTVRAYKPDPVVYELVFDT 151 (175)
T ss_pred CCCCCc---hHHHHH-------HHhhhhCCCHHHHHHHHHHCCC-HHHH------hhhccHhhcCCCCCCHHHHHHHHHH
Confidence 457788 888886 2889999999999999987642 2334 35666644 3333 1 1222222
Q ss_pred CCCCCCeEEEEeCCc
Q 004140 330 GLCHPKMAMVIDDRC 344 (771)
Q Consensus 330 g~~d~~~VVIIDDR~ 344 (771)
-++.++.+++|+|+.
T Consensus 152 ~~~~p~~~l~vgD~~ 166 (175)
T TIGR01493 152 VGLPPDRVLMVAAHQ 166 (175)
T ss_pred HCCCHHHeEeEecCh
Confidence 225789999999983
No 136
>PRK10976 putative hydrolase; Provisional
Probab=67.07 E-value=5.2 Score=41.16 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=22.7
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 004140 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (771)
.+++||||||+.... .--+..+++++++....
T Consensus 4 li~~DlDGTLl~~~~-~is~~~~~ai~~l~~~G 35 (266)
T PRK10976 4 VVASDLDGTLLSPDH-TLSPYAKETLKLLTARG 35 (266)
T ss_pred EEEEeCCCCCcCCCC-cCCHHHHHHHHHHHHCC
Confidence 578999999997643 12245678888877555
No 137
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=66.38 E-value=5.1 Score=41.06 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=22.4
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 004140 140 IVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (771)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (771)
+++||||||+.... +--+..+++++++....
T Consensus 2 i~~DlDGTLl~~~~-~i~~~~~~~i~~l~~~G 32 (256)
T TIGR00099 2 IFIDLDGTLLNDDH-TISPSTKEALAKLREKG 32 (256)
T ss_pred EEEeCCCCCCCCCC-ccCHHHHHHHHHHHHCC
Confidence 78999999998642 12255677888877665
No 138
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=66.30 E-value=5.4 Score=41.31 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=22.4
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 004140 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (771)
.+++||||||+.... .--+..+++++++....
T Consensus 4 li~~DlDGTLl~~~~-~i~~~~~~ai~~l~~~G 35 (272)
T PRK15126 4 LAAFDMDGTLLMPDH-HLGEKTLSTLARLRERD 35 (272)
T ss_pred EEEEeCCCcCcCCCC-cCCHHHHHHHHHHHHCC
Confidence 578999999997543 22344677888776554
No 139
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=65.00 E-value=2.8 Score=40.08 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=12.8
Q ss_pred EEEEeCCcceeeccc
Q 004140 139 AIVFDLDETLIVANT 153 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t 153 (771)
+|+|||||||+....
T Consensus 1 ~viFD~DGTL~D~~~ 15 (175)
T TIGR01493 1 AMVFDVYGTLVDVHG 15 (175)
T ss_pred CeEEecCCcCcccHH
Confidence 589999999998763
No 140
>PLN02811 hydrolase
Probab=64.69 E-value=8.4 Score=38.84 Aligned_cols=92 Identities=20% Similarity=0.124 Sum_probs=53.2
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHH-HHhhCCCCCccccccccCceEeec--C-CC--------ccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEM-WRLLDPEGHLIGSKQLLDRVVCVK--S-GS--------RKS 322 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~I-l~LLDPdg~lF~~r~l~~RIisre--s-g~--------~Ks 322 (771)
+++.||+.++.++|+ ..-|.+.|-|++.+.+.... .+.. .++. +++.++|.+ + +. .+-
T Consensus 77 ~~l~~gv~e~l~~L~---~~g~~~~i~S~~~~~~~~~~~~~~~----~l~~---~f~~i~~~~~~~~~~~KP~p~~~~~a 146 (220)
T PLN02811 77 SDLMPGAERLVRHLH---AKGIPIAIATGSHKRHFDLKTQRHG----ELFS---LMHHVVTGDDPEVKQGKPAPDIFLAA 146 (220)
T ss_pred CCCCccHHHHHHHHH---HCCCcEEEEeCCchhhHHHHHcccH----HHHh---hCCEEEECChhhccCCCCCcHHHHHH
Confidence 467799877777776 45799999999998766432 2211 1111 334666665 2 11 223
Q ss_pred HhhhcccCCCCCCeEEEEeCCccccccCCCCCeEE
Q 004140 323 LLNVFQRGLCHPKMAMVIDDRCKVWEDKDQPRVHV 357 (771)
Q Consensus 323 L~rLf~~g~~d~~~VVIIDDR~dVW~~~~~NlI~V 357 (771)
++++. .+++.++.+|+|+|+..--....+..+.+
T Consensus 147 ~~~~~-~~~~~~~~~v~IgDs~~di~aA~~aG~~~ 180 (220)
T PLN02811 147 ARRFE-DGPVDPGKVLVFEDAPSGVEAAKNAGMSV 180 (220)
T ss_pred HHHhC-CCCCCccceEEEeccHhhHHHHHHCCCeE
Confidence 44332 11256889999999964333333334443
No 141
>PRK09449 dUMP phosphatase; Provisional
Probab=63.60 E-value=4.1 Score=40.66 Aligned_cols=13 Identities=54% Similarity=0.621 Sum_probs=11.5
Q ss_pred EEEEeCCcceeec
Q 004140 139 AIVFDLDETLIVA 151 (771)
Q Consensus 139 ~lV~DLDeTLi~A 151 (771)
+|+|||||||+..
T Consensus 5 ~iiFDlDGTLid~ 17 (224)
T PRK09449 5 WILFDADETLFHF 17 (224)
T ss_pred EEEEcCCCchhcc
Confidence 6899999999963
No 142
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=63.18 E-value=6.7 Score=39.21 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=19.8
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhh
Q 004140 140 IVFDLDETLIVANTMKSFEDRIEALRSWIA 169 (771)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~ 169 (771)
|++||||||+..... ..+.-+++|+.+..
T Consensus 2 i~~DlDGTLL~~~~~-~~~~~~~~l~~l~~ 30 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY-DWQPAAPWLTRLQE 30 (221)
T ss_pred EEEeCCCCCcCCCCC-CcHHHHHHHHHHHH
Confidence 789999999976532 24445666666543
No 143
>PRK06769 hypothetical protein; Validated
Probab=62.76 E-value=16 Score=36.00 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=21.8
Q ss_pred EecCChHHHHHHHHHhccCcEEEEEEeCCch
Q 004140 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMAER 286 (771)
Q Consensus 256 KLRPgweeLreFL~a~~sk~FElyVyTmgtR 286 (771)
.+-|++.+++++|+ .+-|.+.|.|++..
T Consensus 28 ~~~pgv~e~L~~Lk---~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 28 TLFPFTKASLQKLK---ANHIKIFSFTNQPG 55 (173)
T ss_pred EECCCHHHHHHHHH---HCCCEEEEEECCch
Confidence 45599777777776 35699999999875
No 144
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=61.90 E-value=3.9 Score=39.20 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=13.1
Q ss_pred EEEEeCCcceeeccc
Q 004140 139 AIVFDLDETLIVANT 153 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t 153 (771)
+++|||||||+....
T Consensus 3 ~iiFD~DGTL~ds~~ 17 (185)
T TIGR02009 3 AVIFDMDGVIVDTAP 17 (185)
T ss_pred eEEEcCCCcccCChH
Confidence 589999999999863
No 145
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=61.83 E-value=8.1 Score=35.57 Aligned_cols=12 Identities=50% Similarity=0.684 Sum_probs=10.9
Q ss_pred EEEEeCCcceee
Q 004140 139 AIVFDLDETLIV 150 (771)
Q Consensus 139 ~lV~DLDeTLi~ 150 (771)
+|+||+|+||+.
T Consensus 2 ~~~~D~dgtL~~ 13 (132)
T TIGR01662 2 GVVLDLDGTLTD 13 (132)
T ss_pred EEEEeCCCceec
Confidence 689999999995
No 146
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=61.74 E-value=7.5 Score=40.00 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=22.0
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 004140 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (771)
.+++||||||+.... .--+..+++++++....
T Consensus 5 li~~DlDGTLl~~~~-~i~~~~~~ai~~l~~~G 36 (270)
T PRK10513 5 LIAIDMDGTLLLPDH-TISPAVKQAIAAARAKG 36 (270)
T ss_pred EEEEecCCcCcCCCC-ccCHHHHHHHHHHHHCC
Confidence 578999999997642 11255677777766544
No 147
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=60.84 E-value=4.1 Score=42.10 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=13.3
Q ss_pred EEEEeCCcceeeccc
Q 004140 139 AIVFDLDETLIVANT 153 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t 153 (771)
+|+|||||||+.+..
T Consensus 24 ~viFDlDGTLiDs~~ 38 (248)
T PLN02770 24 AVLFDVDGTLCDSDP 38 (248)
T ss_pred EEEEcCCCccCcCHH
Confidence 689999999999863
No 148
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=60.66 E-value=13 Score=40.40 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=36.1
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHh---hCCCCCccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRL---LDPEGHLIG 304 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~L---LDPdg~lF~ 304 (771)
+++|||+.++.++|+ ..-.-+.|+|+|-+.++..+++. .++.-.++.
T Consensus 120 l~l~pG~~efl~~L~---~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvS 169 (277)
T TIGR01544 120 VMLKDGYENFFDKLQ---QHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVS 169 (277)
T ss_pred CccCcCHHHHHHHHH---HCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEe
Confidence 568999666666665 46689999999999999999994 345555544
No 149
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=60.48 E-value=37 Score=33.31 Aligned_cols=29 Identities=10% Similarity=0.027 Sum_probs=22.4
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCch
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAER 286 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR 286 (771)
+++-|++.++.+.|+ .+-|.+.|.|+..+
T Consensus 25 ~~~~pgv~e~L~~Lk---~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELK---KMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHH---HCCCEEEEEeCCcc
Confidence 345699777777775 46799999999985
No 150
>PLN02423 phosphomannomutase
Probab=60.32 E-value=13 Score=38.72 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=19.7
Q ss_pred ceEEEEeCCcceeecccccch-HHHHHHHHHHh
Q 004140 137 CLAIVFDLDETLIVANTMKSF-EDRIEALRSWI 168 (771)
Q Consensus 137 ~L~lV~DLDeTLi~A~t~~~~-e~ri~~l~~w~ 168 (771)
++.++|||||||+.... .+ +..++++++..
T Consensus 7 ~~i~~~D~DGTLl~~~~--~i~~~~~~ai~~l~ 37 (245)
T PLN02423 7 GVIALFDVDGTLTAPRK--EATPEMLEFMKELR 37 (245)
T ss_pred ceEEEEeccCCCcCCCC--cCCHHHHHHHHHHH
Confidence 35566999999997653 23 44466666544
No 151
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=59.74 E-value=13 Score=36.61 Aligned_cols=84 Identities=15% Similarity=0.060 Sum_probs=50.0
Q ss_pred cCChHHHHHHHHHhccCcEEEEEEeCCc-hHHHHHHHHhhCCCCCccccccccCceEeecCCCcccHhhhcccCCCCCCe
Q 004140 258 RPAWEDLRSYLIAKGRKRFEVYVCTMAE-RDYALEMWRLLDPEGHLIGSKQLLDRVVCVKSGSRKSLLNVFQRGLCHPKM 336 (771)
Q Consensus 258 RPgweeLreFL~a~~sk~FElyVyTmgt-R~YA~~Il~LLDPdg~lF~~r~l~~RIisresg~~KsL~rLf~~g~~d~~~ 336 (771)
-|++.+++++|+ ..-+.++|.|++. +..+..+++.++-.- +++ +.+. ...-+..++..-++.++.
T Consensus 45 ~pgv~e~L~~Lk---~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~-~~~---------~~KP-~p~~~~~~l~~~~~~~~~ 110 (170)
T TIGR01668 45 YPALRDWIEELK---AAGRKLLIVSNNAGEQRAKAVEKALGIPV-LPH---------AVKP-PGCAFRRAHPEMGLTSEQ 110 (170)
T ss_pred ChhHHHHHHHHH---HcCCEEEEEeCCchHHHHHHHHHHcCCEE-EcC---------CCCC-ChHHHHHHHHHcCCCHHH
Confidence 478555555554 3449999999999 788888877665321 111 0111 111233333322246788
Q ss_pred EEEEeCCc--cccccCCCCCeE
Q 004140 337 AMVIDDRC--KVWEDKDQPRVH 356 (771)
Q Consensus 337 VVIIDDR~--dVW~~~~~NlI~ 356 (771)
+++|+|+. |+-..... ++.
T Consensus 111 ~l~IGDs~~~Di~aA~~a-Gi~ 131 (170)
T TIGR01668 111 VAVVGDRLFTDVMGGNRN-GSY 131 (170)
T ss_pred EEEECCcchHHHHHHHHc-CCe
Confidence 99999995 78877765 443
No 152
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=59.34 E-value=7.2 Score=40.01 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=48.5
Q ss_pred EEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCccccccccCceEeecC-CCccc----Hhhhccc
Q 004140 255 VRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLLDRVVCVKS-GSRKS----LLNVFQR 329 (771)
Q Consensus 255 VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~~RIisres-g~~Ks----L~rLf~~ 329 (771)
+.+-|++ .++|+ .+.+.|-+.|.|+|+..- + .++-..+++.|++.++ +..|- +..++..
T Consensus 112 ~~~~~gv---~~~L~-~L~~~~~l~i~Tn~~~~~-----~-------~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~ 175 (238)
T PRK10748 112 IDVPQAT---HDTLK-QLAKKWPLVAITNGNAQP-----E-------LFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEK 175 (238)
T ss_pred CCCCccH---HHHHH-HHHcCCCEEEEECCCchH-----H-------HCCcHHhhceeEecccCCcCCCcHHHHHHHHHH
Confidence 4455884 44554 444569999999998751 1 1222223456665533 22232 2222222
Q ss_pred CCCCCCeEEEEeCC--ccccccCCCCCeEE
Q 004140 330 GLCHPKMAMVIDDR--CKVWEDKDQPRVHV 357 (771)
Q Consensus 330 g~~d~~~VVIIDDR--~dVW~~~~~NlI~V 357 (771)
.++.++.+|+|.|+ .||-..+.. ++..
T Consensus 176 ~~~~~~~~~~VGD~~~~Di~~A~~a-G~~~ 204 (238)
T PRK10748 176 LNVPIGEILHVGDDLTTDVAGAIRC-GMQA 204 (238)
T ss_pred cCCChhHEEEEcCCcHHHHHHHHHC-CCeE
Confidence 23578889999887 588877654 4443
No 153
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=59.24 E-value=4.8 Score=37.08 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=12.5
Q ss_pred EEEeCCcceeeccc
Q 004140 140 IVFDLDETLIVANT 153 (771)
Q Consensus 140 lV~DLDeTLi~A~t 153 (771)
|+|||||||+....
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 79999999998775
No 154
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=58.05 E-value=4.8 Score=39.63 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=13.9
Q ss_pred EEEEeCCcceeecccc
Q 004140 139 AIVFDLDETLIVANTM 154 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~ 154 (771)
+++||+|||||....+
T Consensus 3 ~viFD~DGTL~d~~~~ 18 (224)
T TIGR02254 3 TLLFDLDDTILDFQAA 18 (224)
T ss_pred EEEEcCcCcccccchH
Confidence 5899999999998764
No 155
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=57.25 E-value=4 Score=40.10 Aligned_cols=13 Identities=46% Similarity=0.820 Sum_probs=11.1
Q ss_pred EEEeCCcceeecc
Q 004140 140 IVFDLDETLIVAN 152 (771)
Q Consensus 140 lV~DLDeTLi~A~ 152 (771)
++||+||||+.+.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999754
No 156
>PLN03017 trehalose-phosphatase
Probab=57.18 E-value=11 Score=42.58 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=24.5
Q ss_pred eeeecCc--chhHhHHHhhhccceEEEEeCCccee
Q 004140 117 WCYSVSS--GLYNSCLGMLNLRCLAIVFDLDETLI 149 (771)
Q Consensus 117 ~~~~~~~--g~y~~~~~lL~~r~L~lV~DLDeTLi 149 (771)
|.-..|. ..++......+.+++.|++|+||||+
T Consensus 89 w~~~~psal~~~~~~~~~~~~k~~llflD~DGTL~ 123 (366)
T PLN03017 89 WIMQHPSALEMFEQIMEASRGKQIVMFLDYDGTLS 123 (366)
T ss_pred HHhhCChHHHHHHHHHHHhcCCCeEEEEecCCcCc
Confidence 4444443 34555667778999999999999999
No 157
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=56.86 E-value=4.3 Score=39.74 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.8
Q ss_pred EEEeCCcceeeccccc
Q 004140 140 IVFDLDETLIVANTMK 155 (771)
Q Consensus 140 lV~DLDeTLi~A~t~~ 155 (771)
.+||+||||+...++-
T Consensus 2 a~FD~DgTL~~~~s~~ 17 (202)
T TIGR01490 2 AFFDFDGTLTAKDTLF 17 (202)
T ss_pred eEEccCCCCCCCchHH
Confidence 6899999999988654
No 158
>cd00873 KU80 Ku-core domain, Ku80 subfamily; Ku80 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=56.68 E-value=30 Score=37.46 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=63.2
Q ss_pred CCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEeC---CeeEEEEec-CC
Q 004140 33 PNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVIG---DEEIHLVAM-PS 108 (771)
Q Consensus 33 ~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~~---~~elhLva~-~~ 108 (771)
-..+|.|.+|-+.++- ++. |.+....+-...+ +......++..|+..|.+.+|.||++.- ++..+|+|+ |.
T Consensus 95 ~~~~l~ilgF~~~~~i-~~~---~~~~~s~~l~P~~-~~~~~~~a~~aL~~am~~~~k~aI~r~v~r~~~~p~l~aL~P~ 169 (300)
T cd00873 95 TSKGLDILGFIKASNV-PRY---YLMGESSYVVPQQ-DDEAAALAFSALVRALAELDKYAIARYVYKDNSEPQLGVLFPR 169 (300)
T ss_pred CCCceEEEeeccHHHC-Chh---heeCCcEEEEcCC-CChhHHHHHHHHHHHHHhCCCEEEEEEEEcCCCCcEEEEEecc
Confidence 4688999999887632 332 5555434444334 4444678999999999999999999983 458899995 54
Q ss_pred CCCCCceEeeeecCcchhHh
Q 004140 109 KQKKFPCFWCYSVSSGLYNS 128 (771)
Q Consensus 109 ~~~~~p~F~~~~~~~g~y~~ 128 (771)
......||+...+| ..|.
T Consensus 170 ~~~~~~~l~l~~LP--f~eD 187 (300)
T cd00873 170 IKEDYECLVLVRLP--FAED 187 (300)
T ss_pred ccCCCCEEEEEecC--chhh
Confidence 44456799998888 4543
No 159
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=55.80 E-value=5.7 Score=40.63 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=12.3
Q ss_pred eEEEEeCCcceeec
Q 004140 138 LAIVFDLDETLIVA 151 (771)
Q Consensus 138 L~lV~DLDeTLi~A 151 (771)
-+++|||||||+..
T Consensus 11 k~vIFDlDGTL~d~ 24 (224)
T PRK14988 11 DTVLLDMDGTLLDL 24 (224)
T ss_pred CEEEEcCCCCccch
Confidence 36999999999994
No 160
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=55.77 E-value=68 Score=34.18 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=39.2
Q ss_pred ecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCC-CCccccccc
Q 004140 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPE-GHLIGSKQL 308 (771)
Q Consensus 257 LRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPd-g~lF~~r~l 308 (771)
+-||.++|-.+|+ .+.-.||+-.-|-|..|.-|...|+-+ .+.|.++++
T Consensus 89 lT~Gi~eLv~~L~---~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~ 138 (227)
T KOG1615|consen 89 LTPGIRELVSRLH---ARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELL 138 (227)
T ss_pred cCCCHHHHHHHHH---HcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheee
Confidence 4599999999998 577899999999999999999998844 344444433
No 161
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=54.68 E-value=10 Score=46.06 Aligned_cols=62 Identities=19% Similarity=0.060 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHhCCCCceEEEEeeeC---CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHH
Q 004140 625 YLSIGVLQEIGKRCSSKVEFRSVVSTS---KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLA 691 (771)
Q Consensus 625 ~DyKS~LQE~aQK~~~~peYeiv~~sG---H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~ 691 (771)
++....|+|- .....|++..++| |.++|...|...|.++ .|.|..+|-|+.-||..|++.+.
T Consensus 506 K~vsd~L~Ek----~rg~k~El~set~~gs~~~R~v~gV~rvG~~a-kG~~~~gd~a~~~a~Lca~~pt~ 570 (816)
T KOG3792|consen 506 KLVSDELAEK----RRGDKYELPSETGTGSHDKRFVKGVMRVGILA-KGLLLNGDRAVELALLCAEKPTS 570 (816)
T ss_pred cchhHHHhhh----ccccceecccccCCCCCCceeeeeeeeeehhh-ccccccchHHHHHHHHhccCccc
Confidence 4556677774 4456788887664 9999999999999765 89999999999999999987663
No 162
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=54.33 E-value=13 Score=37.30 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=19.5
Q ss_pred EEEEeCCcceeecccccch-HHHHHHHHHHhhc
Q 004140 139 AIVFDLDETLIVANTMKSF-EDRIEALRSWIAR 170 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~-e~ri~~l~~w~~~ 170 (771)
.|++||||||+... +.+ +..+++++++...
T Consensus 3 ~v~~DlDGTLl~~~--~~i~~~~~~~i~~l~~~ 33 (215)
T TIGR01487 3 LVAIDIDGTLTEPN--RMISERAIEAIRKAEKK 33 (215)
T ss_pred EEEEecCCCcCCCC--cccCHHHHHHHHHHHHC
Confidence 57899999999543 223 3455666666443
No 163
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=52.29 E-value=7.4 Score=45.90 Aligned_cols=45 Identities=29% Similarity=0.435 Sum_probs=40.1
Q ss_pred ceEEEEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHH
Q 004140 642 VEFRSVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLAE 692 (771)
Q Consensus 642 peYeiv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~ 692 (771)
+.|..+.+.| |.+.|.++|.|+|..+- ||.|++.||+.|+..+.+
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~------~k~~~~~~a~~~~~~~~~ 56 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP------KKKAKQRAAEKALRVFLQ 56 (542)
T ss_pred cccccccccCCCCCCcccceEEecccccc------cccccchhhhHHHHHHhh
Confidence 7899988888 99999999999997654 999999999999998753
No 164
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=52.22 E-value=20 Score=31.37 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=24.5
Q ss_pred CEEEEEEeeCCHHHHHHHHHHHHHHHHHHhhc
Q 004140 664 GEKIGVGMGKTRKDAQQQAAENALHYLAEKYV 695 (771)
Q Consensus 664 Gek~G~G~GkSKKEAEQ~AAK~ALe~L~~kyl 695 (771)
...+|.|.|.+++.|+++|-....++|.....
T Consensus 12 ~~l~a~G~~~~~~~A~~~A~~~la~~i~~~v~ 43 (92)
T PF02169_consen 12 QYLYAVGSGSSREQAKQDALANLAEQISVVVI 43 (92)
T ss_pred cEEEEEEcccChHHHHHHHHHHHHHheeEEEE
Confidence 34689999999999988888777776654443
No 165
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=51.78 E-value=7.8 Score=41.37 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=12.8
Q ss_pred EEEEeCCcceeecc
Q 004140 139 AIVFDLDETLIVAN 152 (771)
Q Consensus 139 ~lV~DLDeTLi~A~ 152 (771)
+|+||+||||+.+.
T Consensus 42 ~VIFDlDGTLvDS~ 55 (286)
T PLN02779 42 ALLFDCDGVLVETE 55 (286)
T ss_pred EEEEeCceeEEccc
Confidence 78999999999976
No 166
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=51.37 E-value=12 Score=38.51 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=20.3
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhhc
Q 004140 140 IVFDLDETLIVANTMKSFEDRIEALRSWIAR 170 (771)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~ 170 (771)
|++||||||+..... .++..+++++.....
T Consensus 2 i~~DlDGTll~~~~~-~~~~~~~~i~~l~~~ 31 (256)
T TIGR01486 2 IFTDLDGTLLDPHGY-DWGPAKEVLERLQEL 31 (256)
T ss_pred EEEcCCCCCcCCCCc-CchHHHHHHHHHHHC
Confidence 789999999987641 234456666665443
No 167
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=51.25 E-value=21 Score=40.06 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=35.1
Q ss_pred eEEEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhh-C
Q 004140 252 SVLVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLL-D 297 (771)
Q Consensus 252 ~y~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LL-D 297 (771)
.-||+.-|++.++++.|+ +.-.-+.|-|++.+.|++.+++.+ +
T Consensus 180 ~~yv~~~pgl~elL~~Lr---~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLK---EHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred HHHhccchhHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 357888999666666665 456788999999999999999986 6
No 168
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=51.22 E-value=14 Score=36.31 Aligned_cols=30 Identities=37% Similarity=0.464 Sum_probs=17.4
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhh
Q 004140 140 IVFDLDETLIVANTMKSFEDRIEALRSWIA 169 (771)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~ 169 (771)
|++||||||+...+.+--+..+++|.+...
T Consensus 2 i~~D~DgTL~~~~~~~~~~~~~~~l~~l~~ 31 (204)
T TIGR01484 2 LFFDLDGTLLDPNAHELSPETIEALERLRE 31 (204)
T ss_pred EEEeCcCCCcCCCCCcCCHHHHHHHHHHHH
Confidence 789999999975421111334444544433
No 169
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=51.21 E-value=26 Score=36.09 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=29.6
Q ss_pred ecCChHHHHHHHHHhccCcEEEEEEeCCchHHHH--HHHHhhCCC
Q 004140 257 LRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYAL--EMWRLLDPE 299 (771)
Q Consensus 257 LRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~--~Il~LLDPd 299 (771)
+-|++.++.+.|+ ..-+.++|.||+++..+. +.++.++-+
T Consensus 25 ~~pga~e~L~~L~---~~G~~~~ivTN~~~~~~~~~~~L~~~gl~ 66 (242)
T TIGR01459 25 TYPGAVQNLNKII---AQGKPVYFVSNSPRNIFSLHKTLKSLGIN 66 (242)
T ss_pred cCccHHHHHHHHH---HCCCEEEEEeCCCCChHHHHHHHHHCCCC
Confidence 4599777777776 468899999999998876 555555443
No 170
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=50.69 E-value=13 Score=40.23 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=22.0
Q ss_pred eEEEEeCCcceeecccccchHHHHHHHHHHh
Q 004140 138 LAIVFDLDETLIVANTMKSFEDRIEALRSWI 168 (771)
Q Consensus 138 L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~ 168 (771)
++++||+||||+..... ++.-.++++...
T Consensus 1 ~~~ifD~DGvL~~g~~~--i~ga~eal~~L~ 29 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKKP--IAGASDALRRLN 29 (321)
T ss_pred CEEEEeCcCceECCccc--cHHHHHHHHHHh
Confidence 57999999999998754 666666665543
No 171
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=50.64 E-value=10 Score=41.43 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.9
Q ss_pred ccceEEEEeCCcceee
Q 004140 135 LRCLAIVFDLDETLIV 150 (771)
Q Consensus 135 ~r~L~lV~DLDeTLi~ 150 (771)
..+.++|||+|||++-
T Consensus 99 ~~~dA~V~DIDET~Ls 114 (275)
T TIGR01680 99 HEKDTFLFNIDGTALS 114 (275)
T ss_pred CCCCEEEEECcccccc
Confidence 3579999999999995
No 172
>PLN02151 trehalose-phosphatase
Probab=50.63 E-value=17 Score=40.89 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=23.9
Q ss_pred eeeecCcc--hhHhHHHhhhccceEEEEeCCccee
Q 004140 117 WCYSVSSG--LYNSCLGMLNLRCLAIVFDLDETLI 149 (771)
Q Consensus 117 ~~~~~~~g--~y~~~~~lL~~r~L~lV~DLDeTLi 149 (771)
|.-..|.. .++....+.+.+++.|++|+||||+
T Consensus 76 w~~~~p~a~~~~~~~~~~~~~~~~ll~lDyDGTL~ 110 (354)
T PLN02151 76 WIKEHPSALNMFEEILHKSEGKQIVMFLDYDGTLS 110 (354)
T ss_pred HHHhCChHHHHHHHHHHhhcCCceEEEEecCccCC
Confidence 44444443 4555566677788999999999999
No 173
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=50.51 E-value=8 Score=38.78 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=13.4
Q ss_pred eEEEEeCCcceeeccc
Q 004140 138 LAIVFDLDETLIVANT 153 (771)
Q Consensus 138 L~lV~DLDeTLi~A~t 153 (771)
-+|+||+||||+....
T Consensus 8 k~iiFD~DGTL~d~~~ 23 (222)
T PRK10826 8 LAAIFDMDGLLIDSEP 23 (222)
T ss_pred cEEEEcCCCCCCcCHH
Confidence 4789999999998753
No 174
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=50.48 E-value=49 Score=37.26 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=21.7
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCC
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMA 284 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmg 284 (771)
.+++.|++.+++++|+ .+.|.++|.|+.
T Consensus 28 ~~~l~pGV~e~L~~Lk---~~G~kL~IvTNq 55 (354)
T PRK05446 28 KLAFEPGVIPALLKLQ---KAGYKLVMVTNQ 55 (354)
T ss_pred cceECcCHHHHHHHHH---hCCCeEEEEECC
Confidence 4678899666666665 467999999994
No 175
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=50.18 E-value=14 Score=39.11 Aligned_cols=15 Identities=47% Similarity=0.479 Sum_probs=13.4
Q ss_pred ceEEEEeCCcceeec
Q 004140 137 CLAIVFDLDETLIVA 151 (771)
Q Consensus 137 ~L~lV~DLDeTLi~A 151 (771)
++.|++|+||||+..
T Consensus 14 ~~li~~D~DGTLl~~ 28 (266)
T PRK10187 14 NYAWFFDLDGTLAEI 28 (266)
T ss_pred CEEEEEecCCCCCCC
Confidence 588999999999975
No 176
>PLN02887 hydrolase family protein
Probab=49.86 E-value=16 Score=43.48 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=27.9
Q ss_pred HhhhccceEEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 004140 131 GMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (771)
Q Consensus 131 ~lL~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (771)
|.....-=.|++||||||+.... .--+..+++++.|....
T Consensus 302 ~~~~~~iKLIa~DLDGTLLn~d~-~Is~~t~eAI~kl~ekG 341 (580)
T PLN02887 302 RFYKPKFSYIFCDMDGTLLNSKS-QISETNAKALKEALSRG 341 (580)
T ss_pred hhhccCccEEEEeCCCCCCCCCC-ccCHHHHHHHHHHHHCC
Confidence 44444445789999999997642 12356788888888665
No 177
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=49.85 E-value=55 Score=32.11 Aligned_cols=28 Identities=18% Similarity=0.078 Sum_probs=21.2
Q ss_pred EecCChHHHHHHHHHhccCcEEEEEEeCCch
Q 004140 256 RLRPAWEDLRSYLIAKGRKRFEVYVCTMAER 286 (771)
Q Consensus 256 KLRPgweeLreFL~a~~sk~FElyVyTmgtR 286 (771)
.+.|++.++.+.|+ .+-|.+.|.|++++
T Consensus 29 ~~~pgv~e~L~~Lk---~~g~~l~I~Tn~~~ 56 (181)
T PRK08942 29 IPIPGSIEAIARLK---QAGYRVVVATNQSG 56 (181)
T ss_pred EECCCHHHHHHHHH---HCCCEEEEEeCCcc
Confidence 46699777666665 35699999999874
No 178
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=49.74 E-value=17 Score=34.68 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=13.4
Q ss_pred EEEEeCCcceeeccc
Q 004140 139 AIVFDLDETLIVANT 153 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t 153 (771)
++.||+|+||+.-..
T Consensus 2 ~~~~d~dgtl~~~~~ 16 (147)
T TIGR01656 2 ALFLDRDGVINEDTV 16 (147)
T ss_pred eEEEeCCCceeccCC
Confidence 588999999999885
No 179
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=49.33 E-value=15 Score=38.37 Aligned_cols=31 Identities=35% Similarity=0.410 Sum_probs=20.3
Q ss_pred eEEEEeCCcceeecccccchHHHHHHHHHHhh
Q 004140 138 LAIVFDLDETLIVANTMKSFEDRIEALRSWIA 169 (771)
Q Consensus 138 L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~ 169 (771)
-.|++||||||+.... ...+.-+++++.+..
T Consensus 5 kli~~DlDGTLl~~~~-~~~~~~~~ai~~l~~ 35 (273)
T PRK00192 5 LLVFTDLDGTLLDHHT-YSYEPAKPALKALKE 35 (273)
T ss_pred eEEEEcCcccCcCCCC-cCcHHHHHHHHHHHH
Confidence 4789999999997443 234555566655443
No 180
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=47.92 E-value=12 Score=38.52 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=18.1
Q ss_pred HhhhccceEEEEeCCcceeeccc
Q 004140 131 GMLNLRCLAIVFDLDETLIVANT 153 (771)
Q Consensus 131 ~lL~~r~L~lV~DLDeTLi~A~t 153 (771)
.|.++--=+||+|||+|||-=..
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~ 44 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDN 44 (175)
T ss_pred HHHHcCCcEEEEeccCceecccC
Confidence 56666667999999999996553
No 181
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=47.06 E-value=13 Score=37.86 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=16.5
Q ss_pred EEEeCCcceeecccccchHHHHHHH
Q 004140 140 IVFDLDETLIVANTMKSFEDRIEAL 164 (771)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l 164 (771)
|++||||||+. ..+.+.++.+++
T Consensus 2 i~~DlDgTLl~--~~~~~~~~~~~~ 24 (236)
T TIGR02471 2 IITDLDNTLLG--DDEGLASFVELL 24 (236)
T ss_pred eEEeccccccC--CHHHHHHHHHHH
Confidence 78999999997 445666655444
No 182
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=46.34 E-value=22 Score=36.74 Aligned_cols=17 Identities=41% Similarity=0.366 Sum_probs=14.3
Q ss_pred cceEEEEeCCcceeecc
Q 004140 136 RCLAIVFDLDETLIVAN 152 (771)
Q Consensus 136 r~L~lV~DLDeTLi~A~ 152 (771)
|+..|+||+||||+--.
T Consensus 2 ~~~~l~lD~DGTL~~~~ 18 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIV 18 (244)
T ss_pred CcEEEEEecCccccCCc
Confidence 67889999999998643
No 183
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=44.23 E-value=18 Score=37.82 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=23.2
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 004140 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (771)
.++||+||||+.... .+..-+++++++....
T Consensus 3 ~~~~D~DGtl~~~~~--~i~~a~~~l~~l~~~g 33 (249)
T TIGR01457 3 GYLIDLDGTMYKGKE--RIPEAETFVHELQKRD 33 (249)
T ss_pred EEEEeCCCceEcCCe--eCcCHHHHHHHHHHCC
Confidence 588999999998874 4556677777666544
No 184
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=43.97 E-value=23 Score=37.15 Aligned_cols=13 Identities=46% Similarity=0.429 Sum_probs=11.9
Q ss_pred ceEEEEeCCccee
Q 004140 137 CLAIVFDLDETLI 149 (771)
Q Consensus 137 ~L~lV~DLDeTLi 149 (771)
++.||.|||+|||
T Consensus 2 ~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 2 PRLLASDLDGTLI 14 (247)
T ss_dssp SEEEEEETBTTTB
T ss_pred CEEEEEECCCCCc
Confidence 5789999999999
No 185
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=41.73 E-value=21 Score=37.53 Aligned_cols=89 Identities=20% Similarity=0.243 Sum_probs=46.4
Q ss_pred CChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhhCCCCCcccccccc-C--ceEeecCCCcccHhhhcccCCCCCC
Q 004140 259 PAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLLDPEGHLIGSKQLL-D--RVVCVKSGSRKSLLNVFQRGLCHPK 335 (771)
Q Consensus 259 PgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LLDPdg~lF~~r~l~-~--RIisresg~~KsL~rLf~~g~~d~~ 335 (771)
+.+.+...+|. ..-+.+.|.|+..+.|+......++.. .+|..-... . .++.-+- +..-+..++...+.+++
T Consensus 123 ~~l~~a~~~L~---~~~~~~~iatn~~~~~~~~~~~~~g~g-~~~~~i~~~~~~~~~~~gKP-~p~~~~~~~~~~~~~~~ 197 (257)
T TIGR01458 123 QILNQAFRLLL---DGAKPLLIAIGKGRYYKRKDGLALDVG-PFVTALEYATDTKATVVGKP-SKTFFLEALRATGCEPE 197 (257)
T ss_pred HHHHHHHHHHH---cCCCCEEEEeCCCCCCcCCCCCCCCch-HHHHHHHHHhCCCceeecCC-CHHHHHHHHHHhCCChh
Confidence 45566667775 355678899999998886655544432 233200000 0 0000011 11112222222124688
Q ss_pred eEEEEeCCc--cccccCCC
Q 004140 336 MAMVIDDRC--KVWEDKDQ 352 (771)
Q Consensus 336 ~VVIIDDR~--dVW~~~~~ 352 (771)
.+++|.|+. |+-..+..
T Consensus 198 ~~~~vGD~~~~Di~~a~~~ 216 (257)
T TIGR01458 198 EAVMIGDDCRDDVGGAQDC 216 (257)
T ss_pred hEEEECCCcHHHHHHHHHc
Confidence 999998884 77766654
No 186
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=41.16 E-value=26 Score=34.53 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=14.1
Q ss_pred EEEEeCCcceeecccccc
Q 004140 139 AIVFDLDETLIVANTMKS 156 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~ 156 (771)
.+++|+|+||+...+...
T Consensus 1 iVisDIDGTL~~sd~~~~ 18 (157)
T smart00775 1 IVISDIDGTITKSDVLGH 18 (157)
T ss_pred CEEEecCCCCcccccccc
Confidence 378999999998875433
No 187
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=40.72 E-value=12 Score=45.53 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=44.4
Q ss_pred CCCceEE------EEeeeC--CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHH
Q 004140 639 SSKVEFR------SVVSTS--KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLA 691 (771)
Q Consensus 639 ~~~peYe------iv~~sG--H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~ 691 (771)
+..+.|+ ++..++ |.++|+++|.++|..+ +..|.|||.|+..||.+-|+...
T Consensus 383 RhrLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~-~a~gps~~~~~wh~~~k~lq~~~ 442 (816)
T KOG3792|consen 383 RHRLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPA-EAEGPSKKTAKWHAARKRLQNEG 442 (816)
T ss_pred cccceeccccCCCceeccCCcccchhhhhhhhcCCcc-ccCCcccccchHHHHHHHhhccC
Confidence 4457788 777777 9999999999999876 78899999999999999987664
No 188
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=40.06 E-value=12 Score=40.49 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=15.4
Q ss_pred ccceEEEEeCCcceeecc
Q 004140 135 LRCLAIVFDLDETLIVAN 152 (771)
Q Consensus 135 ~r~L~lV~DLDeTLi~A~ 152 (771)
.++-+||+|||||+|.-+
T Consensus 77 ~K~~aVvlDlDETvLdNs 94 (274)
T COG2503 77 GKKKAVVLDLDETVLDNS 94 (274)
T ss_pred CCCceEEEecchHhhcCc
Confidence 455799999999999876
No 189
>PLN02382 probable sucrose-phosphatase
Probab=39.66 E-value=21 Score=40.55 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=16.2
Q ss_pred hhhccceEEEEeCCcceeec
Q 004140 132 MLNLRCLAIVFDLDETLIVA 151 (771)
Q Consensus 132 lL~~r~L~lV~DLDeTLi~A 151 (771)
|-...+|.||-||||||+..
T Consensus 4 ~~~~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 4 LSGSPRLMIVSDLDHTMVDH 23 (413)
T ss_pred ccCCCCEEEEEcCCCcCcCC
Confidence 33456899999999999965
No 190
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=38.25 E-value=27 Score=35.91 Aligned_cols=14 Identities=50% Similarity=0.743 Sum_probs=12.6
Q ss_pred EEEEeCCcceeecc
Q 004140 139 AIVFDLDETLIVAN 152 (771)
Q Consensus 139 ~lV~DLDeTLi~A~ 152 (771)
+|+||||+||+...
T Consensus 12 ~iiFDlDGTL~D~~ 25 (238)
T PRK10748 12 ALTFDLDDTLYDNR 25 (238)
T ss_pred eEEEcCcccccCCh
Confidence 79999999999875
No 191
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=36.99 E-value=37 Score=31.01 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=0.0
Q ss_pred EEEeCCcceeecccccchHHHHHHHHHHhhcC-------Cchhhh-hchhHHHHHh
Q 004140 140 IVFDLDETLIVANTMKSFEDRIEALRSWIARE-------PDQIRA-SGMSAELKRY 187 (771)
Q Consensus 140 lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~-------~dP~~~-~~~~~E~kr~ 187 (771)
++|||||||++-.+. +..-.+++....... +|+.+. ..+.+.++++
T Consensus 1 ~l~D~dGvl~~g~~~--ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~ 54 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEP--IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKL 54 (101)
T ss_dssp EEEESTTTSEETTEE---TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHT
T ss_pred CEEeCccEeEeCCCc--CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhc
No 192
>PRK10444 UMP phosphatase; Provisional
Probab=35.18 E-value=32 Score=36.25 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=20.9
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhh
Q 004140 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIA 169 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~ 169 (771)
.++|||||||+...+ .++.-+++++....
T Consensus 3 ~v~~DlDGtL~~~~~--~~p~a~~~l~~L~~ 31 (248)
T PRK10444 3 NVICDIDGVLMHDNV--AVPGAAEFLHRILD 31 (248)
T ss_pred EEEEeCCCceEeCCe--eCccHHHHHHHHHH
Confidence 578999999999974 36666666654443
No 193
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=34.97 E-value=19 Score=36.83 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=29.3
Q ss_pred EEecCChHHHH-HHHHHhccCcEEEEEEeCCchHHHHHHHHh
Q 004140 255 VRLRPAWEDLR-SYLIAKGRKRFEVYVCTMAERDYALEMWRL 295 (771)
Q Consensus 255 VKLRPgweeLr-eFL~a~~sk~FElyVyTmgtR~YA~~Il~L 295 (771)
++++|++.++. +.|+ ++-+.|.|.|++.+.|+..+++.
T Consensus 93 ~~l~pga~e~L~~~l~---~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLE---SSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHH---hCCCEEEEEcCCcHHHHHHHHHh
Confidence 36789944444 2443 47899999999999999999975
No 194
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=33.53 E-value=29 Score=26.67 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=16.4
Q ss_pred hhhccceeeeCCeEEEeccccc
Q 004140 196 QYTENDCVMDNGKVFKVQQEEV 217 (771)
Q Consensus 196 q~~~~d~V~~nG~~~~~q~e~v 217 (771)
.|..+|.|+.||++|+++.-.-
T Consensus 9 ~Y~~Gd~V~~~g~~y~a~~~~~ 30 (41)
T PF02839_consen 9 TYNAGDRVSYNGKLYQAKWWTQ 30 (41)
T ss_dssp EE-TT-EEEETTEEEEESSSCE
T ss_pred EEcCCCEEEECCCEEEEeeccc
Confidence 5788999999999999965443
No 195
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.69 E-value=25 Score=41.48 Aligned_cols=23 Identities=35% Similarity=0.281 Sum_probs=18.8
Q ss_pred HHhhhccceEEEEeCCcceeecc
Q 004140 130 LGMLNLRCLAIVFDLDETLIVAN 152 (771)
Q Consensus 130 ~~lL~~r~L~lV~DLDeTLi~A~ 152 (771)
..|-..++-|||+|||.||..-.
T Consensus 215 ~A~~g~~kK~LVLDLDNTLWGGV 237 (574)
T COG3882 215 AAMSGKSKKALVLDLDNTLWGGV 237 (574)
T ss_pred HHhhCcccceEEEecCCcccccc
Confidence 35666778899999999998765
No 196
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=32.07 E-value=42 Score=41.03 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=24.2
Q ss_pred cceEEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 004140 136 RCLAIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (771)
Q Consensus 136 r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (771)
.+-.|++||||||+..... ..+..+++|++.....
T Consensus 415 ~~KLIfsDLDGTLLd~d~~-i~~~t~eAL~~L~ekG 449 (694)
T PRK14502 415 FKKIVYTDLDGTLLNPLTY-SYSTALDALRLLKDKE 449 (694)
T ss_pred eeeEEEEECcCCCcCCCCc-cCHHHHHHHHHHHHcC
Confidence 3457889999999987542 2355677777766443
No 197
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=31.59 E-value=35 Score=36.01 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=20.9
Q ss_pred EEEEeCCcceeecccccchHHHHHHHHHHhh
Q 004140 139 AIVFDLDETLIVANTMKSFEDRIEALRSWIA 169 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~ 169 (771)
+++||+||||+.... .++.-.++|+.+..
T Consensus 4 ~~~~D~DGtl~~~~~--~~~ga~e~l~~L~~ 32 (279)
T TIGR01452 4 GFIFDCDGVLWLGER--VVPGAPELLDRLAR 32 (279)
T ss_pred EEEEeCCCceEcCCe--eCcCHHHHHHHHHH
Confidence 688999999998764 46655666665543
No 198
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=31.22 E-value=28 Score=34.44 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=11.8
Q ss_pred EEEEeCCcceeeccccc
Q 004140 139 AIVFDLDETLIVANTMK 155 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~~ 155 (771)
.+-||||+|||......
T Consensus 2 ia~fD~DgTLi~~~s~~ 18 (159)
T PF08645_consen 2 IAFFDLDGTLIKTKSGK 18 (159)
T ss_dssp EEEE-SCTTTEE-STST
T ss_pred EEEEeCCCCccCCCCCC
Confidence 35799999999987644
No 199
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=31.07 E-value=1.9e+02 Score=30.79 Aligned_cols=79 Identities=19% Similarity=0.035 Sum_probs=47.6
Q ss_pred EEEecCChHHHHHHHHHhccCcEEEEEEeCCchHHHHHHHHhh-CCCCCccccccccCceEeec-----CC------Ccc
Q 004140 254 LVRLRPAWEDLRSYLIAKGRKRFEVYVCTMAERDYALEMWRLL-DPEGHLIGSKQLLDRVVCVK-----SG------SRK 321 (771)
Q Consensus 254 ~VKLRPgweeLreFL~a~~sk~FElyVyTmgtR~YA~~Il~LL-DPdg~lF~~r~l~~RIisre-----sg------~~K 321 (771)
-+++=||.+.|..-|. .+.=-+-++|.+++..+....+-+ +.- ..| ..+++-+ .| ..+
T Consensus 90 ~~~~~PGa~kLv~~L~---~~gip~alat~s~~~~~~~k~~~~~~~~-~~f------~~~v~~d~~~v~~gKP~Pdi~l~ 159 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLK---NNGIPVALATSSTSASFELKISRHEDIF-KNF------SHVVLGDDPEVKNGKPDPDIYLK 159 (222)
T ss_pred ccccCCcHHHHHHHHH---hCCCCeeEEecCCcccHHHHHHHhhHHH-Hhc------CCCeecCCccccCCCCCchHHHH
Confidence 3455589777777775 566788999999777776665533 232 223 3455521 12 134
Q ss_pred cHhhhcccCCCCC-CeEEEEeCCccc
Q 004140 322 SLLNVFQRGLCHP-KMAMVIDDRCKV 346 (771)
Q Consensus 322 sL~rLf~~g~~d~-~~VVIIDDR~dV 346 (771)
.++++-. ++ +.+|+.+|.+.-
T Consensus 160 A~~~l~~----~~~~k~lVfeds~~G 181 (222)
T KOG2914|consen 160 AAKRLGV----PPPSKCLVFEDSPVG 181 (222)
T ss_pred HHHhcCC----CCccceEEECCCHHH
Confidence 4554433 34 888888888763
No 200
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=29.72 E-value=1.2e+02 Score=35.99 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhC-CC---CceEEEEeeeC-CCceEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHH
Q 004140 627 SIGVLQEIGKRC-SS---KVEFRSVVSTS-KDLQFSVEVLFTGEKIGVGMGKTRKDAQQQAAENALHYLA 691 (771)
Q Consensus 627 yKS~LQE~aQK~-~~---~peYeiv~~sG-H~~~FtVeV~I~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~ 691 (771)
+-.+|.+..|++ +. .+.++++ ..| ....|++.| |+--.+|+.++||+++|.|.+..|++|.
T Consensus 492 Py~iL~~cl~Rn~g~~d~~ik~E~i-~~~nqkse~im~~---Gkht~~~~cknkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 492 PYNILRDCLSRNLGWNDLVIKKEMI-GNGNQKSEVIMIL---GKHTEEAECKNKRQGKQLASQRILQKLH 557 (650)
T ss_pred HHHHHHHHHHhhcCCcceeeeeecc-CCCCccceeEeee---ccceeeeeeechhHHHHHHHHHHHHHhC
Confidence 457888888887 32 2445553 223 444566544 7777799999999999999999999885
No 201
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=27.50 E-value=25 Score=44.22 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=58.1
Q ss_pred CCCCCChHHHHHHHHHhCCCCceEEEEeeeC-CCceEEEEEEE-----CCEEEEEEeeCCHHHHHHHHHHHHHHHHH
Q 004140 621 LLPSYLSIGVLQEIGKRCSSKVEFRSVVSTS-KDLQFSVEVLF-----TGEKIGVGMGKTRKDAQQQAAENALHYLA 691 (771)
Q Consensus 621 ~~ps~DyKS~LQE~aQK~~~~peYeiv~~sG-H~~~FtVeV~I-----~Gek~G~G~GkSKKEAEQ~AAK~ALe~L~ 691 (771)
.++-.|.|..|+++-|+.....+|+.+.... |.+.|+.+..| +-.+.+.+.|+.||.|+...|......|-
T Consensus 163 ~wt~eN~K~~ln~~~q~~~~~~~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm~ 239 (1282)
T KOG0921|consen 163 NWTMENAKKALNEYLQKMRIQDNYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQLF 239 (1282)
T ss_pred CCCcchhHHHHhHHHhhhhhccccceeecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHHH
Confidence 3455699999999999996688888876554 99999988764 44567789999999999999998888774
No 202
>cd00789 KU_like Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.
Probab=26.17 E-value=1.8e+02 Score=31.42 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=55.5
Q ss_pred cCCCceEEeeecCCCCCCCcchhhhhcccCceeeecCCCCCCCchhHHHHHHHhhcccccEEEEe--CCeeEEEEecCCC
Q 004140 32 FPNNEIRIRHISPSSERCIPLSILHTISSFSLRCKLESSAPVEQPHLINLHASCFYEFKTAVVVI--GDEEIHLVAMPSK 109 (771)
Q Consensus 32 ~~~~~i~i~~~~~~~e~~~pl~~lh~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~e~ktaVv~~--~~~elhLva~~~~ 109 (771)
+....|.|.+|-+.++-. | +|+ .. +.-...+. ....++..|+..|.+.+|.||++. .+.+ ||+|+-+.
T Consensus 84 ~~~~~i~IlgFv~~~~I~-~---~y~-~~-syyl~P~~---~~~kaf~~L~~Al~~~~kvaIar~V~r~~~-~l~aL~P~ 153 (256)
T cd00789 84 ESTRTIEIVDFVPLDEID-P---IYF-DK-PYYLAPDK---GGEKAYALLREALRDTGKVAIAKVVLRTRE-RLAALRPR 153 (256)
T ss_pred CCCCeEEEEeEeCHHHCC-H---hHc-CC-CEEEecCC---CcchHHHHHHHHHHHcCCEEEEEEEEcCCc-eEEEEEEC
Confidence 456899999999887655 3 233 22 22222222 346799999999999999999998 4455 89997543
Q ss_pred CCCCceEeeeecC
Q 004140 110 QKKFPCFWCYSVS 122 (771)
Q Consensus 110 ~~~~p~F~~~~~~ 122 (771)
. .|||...+|
T Consensus 154 ~---~gL~l~~Lp 163 (256)
T cd00789 154 G---KGLVLNTLR 163 (256)
T ss_pred C---CEEEEEECC
Confidence 3 589988888
No 203
>cd00036 ChtBD3 Chitin/cellulose binding domain. Putative carbohydrate binding domain found in many different glycosyl hydrolase enzymes. May occur in tandem arrangements.
Probab=24.10 E-value=55 Score=25.07 Aligned_cols=19 Identities=47% Similarity=0.629 Sum_probs=16.7
Q ss_pred hhhccceeeeCCeEEEecc
Q 004140 196 QYTENDCVMDNGKVFKVQQ 214 (771)
Q Consensus 196 q~~~~d~V~~nG~~~~~q~ 214 (771)
.|..+|.|+.||+.|.++-
T Consensus 7 ~Y~~Gd~V~~~g~~y~a~w 25 (41)
T cd00036 7 VYTAGDLVSYNGKVYKAKW 25 (41)
T ss_pred EecCCCEEEECCeEEEEee
Confidence 4778999999999999965
No 204
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=23.54 E-value=74 Score=31.18 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=10.3
Q ss_pred EEEEeCCcceee
Q 004140 139 AIVFDLDETLIV 150 (771)
Q Consensus 139 ~lV~DLDeTLi~ 150 (771)
++.||+|+||+.
T Consensus 3 ~~~~D~Dgtl~~ 14 (176)
T TIGR00213 3 AIFLDRDGTINI 14 (176)
T ss_pred EEEEeCCCCEeC
Confidence 577899999995
No 205
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=22.39 E-value=1.1e+02 Score=31.55 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=15.5
Q ss_pred EEEEeCCcceeecccccch
Q 004140 139 AIVFDLDETLIVANTMKSF 157 (771)
Q Consensus 139 ~lV~DLDeTLi~A~t~~~~ 157 (771)
..+||+||||+.--|+..|
T Consensus 7 la~FDfDgTLt~~ds~~~f 25 (210)
T TIGR01545 7 IIFFDLDGTLHQQDMFGSF 25 (210)
T ss_pred EEEEcCCCCCccCccHHHH
Confidence 4789999999999876543
No 206
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=22.17 E-value=48 Score=32.47 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=11.1
Q ss_pred EEEEeCCcceeecc
Q 004140 139 AIVFDLDETLIVAN 152 (771)
Q Consensus 139 ~lV~DLDeTLi~A~ 152 (771)
.|.||+|+||+...
T Consensus 5 ~~~~d~~~t~~~~~ 18 (181)
T PRK08942 5 AIFLDRDGVINVDS 18 (181)
T ss_pred EEEEECCCCcccCC
Confidence 68899999985543
No 207
>PTZ00445 p36-lilke protein; Provisional
Probab=21.96 E-value=1.2e+02 Score=32.44 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=66.0
Q ss_pred CCcceee-----ccCCCCCCceEEEEecCChHHHHHHHHHhc-cCcEEEEEEeCCchHH-----------HHHHHH-hhC
Q 004140 236 ERNLVLT-----RINPENRDTSVLVRLRPAWEDLRSYLIAKG-RKRFEVYVCTMAERDY-----------ALEMWR-LLD 297 (771)
Q Consensus 236 ~~n~~lt-----rInP~~r~~~y~VKLRPgweeLreFL~a~~-sk~FElyVyTmgtR~Y-----------A~~Il~-LLD 297 (771)
-.|.+++ +++|.+....+..++||- +..++. ++ ...+-|.|-|.+.... +.+|++ .|+
T Consensus 50 ~DnTlI~~HsgG~~~~~~~~~~~~~~~tpe---fk~~~~-~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk 125 (219)
T PTZ00445 50 FDLTMITKHSGGYIDPDNDDIRVLTSVTPD---FKILGK-RLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALK 125 (219)
T ss_pred chhhhhhhhcccccCCCcchhhhhccCCHH---HHHHHH-HHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHH
Confidence 3456666 788887777888899999 777887 55 4689999999998865 334444 344
Q ss_pred CCCCccccccccCceEeec------------------CCCcccH--hhhcccCCCCCCeEEEEeCCcc
Q 004140 298 PEGHLIGSKQLLDRVVCVK------------------SGSRKSL--LNVFQRGLCHPKMAMVIDDRCK 345 (771)
Q Consensus 298 Pdg~lF~~r~l~~RIisre------------------sg~~KsL--~rLf~~g~~d~~~VVIIDDR~d 345 (771)
-.+-=|.- .++.|.. +...|+- ++++...++.++.+++|||+..
T Consensus 126 ~s~~~~~i----~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~ 189 (219)
T PTZ00445 126 KSKCDFKI----KKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMN 189 (219)
T ss_pred hcCcccee----eeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHH
Confidence 32211110 2333321 1124444 7887766678999999999854
No 208
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=21.56 E-value=1.9e+02 Score=23.06 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=13.1
Q ss_pred EeeCCHHHHHHHHHHHHH
Q 004140 670 GMGKTRKDAQQQAAENAL 687 (771)
Q Consensus 670 G~GkSKKEAEQ~AAK~AL 687 (771)
+-.+|||||+..+++.-.
T Consensus 22 ~GF~TkkeA~~~~~~~~~ 39 (46)
T PF14657_consen 22 RGFKTKKEAEKALAKIEA 39 (46)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 335899999988877433
No 209
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=21.19 E-value=79 Score=32.22 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=15.9
Q ss_pred hccceEEEEeCCcceeecccc
Q 004140 134 NLRCLAIVFDLDETLIVANTM 154 (771)
Q Consensus 134 ~~r~L~lV~DLDeTLi~A~t~ 154 (771)
..--=+||||+|.||+.-...
T Consensus 38 ~~Gik~li~DkDNTL~~~~~~ 58 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPYED 58 (168)
T ss_pred hcCceEEEEcCCCCCCCCCcC
Confidence 334468999999999876654
No 210
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=20.76 E-value=1e+02 Score=34.95 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=33.8
Q ss_pred cchhHhHHHhhhccceEEEEeCCcceeecccccchHHHHHHHHHHhhcC
Q 004140 123 SGLYNSCLGMLNLRCLAIVFDLDETLIVANTMKSFEDRIEALRSWIARE 171 (771)
Q Consensus 123 ~g~y~~~~~lL~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~ 171 (771)
.++|.+-.--++.-...||=|||-|++|.-+.. .+-.+.+.|+...
T Consensus 147 ~~Ae~~~~~v~~~a~igiISDiDDTV~~T~V~~---~~r~~~~s~~l~~ 192 (373)
T COG4850 147 IKAEAAPVPVLNRAGIGIISDIDDTVKVTGVTE---GPRKAGRSLLLHA 192 (373)
T ss_pred cchhcccceeecccceeeeeccccceEeccccc---chHHHHHHhhhcc
Confidence 457777778888999999999999999998754 3333445555444
No 211
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=20.58 E-value=1e+02 Score=33.56 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=27.3
Q ss_pred ceEEEEeCCcceeecccccchHHHHHHHHHHhhcC-------Cchhhhh
Q 004140 137 CLAIVFDLDETLIVANTMKSFEDRIEALRSWIARE-------PDQIRAS 178 (771)
Q Consensus 137 ~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~w~~~~-------~dP~~~~ 178 (771)
.=++.|||||||++-++ .|.-=.++|..+.... +||.+..
T Consensus 8 y~~~l~DlDGvl~~G~~--~ipga~e~l~~L~~~g~~~iflTNn~~~s~ 54 (269)
T COG0647 8 YDGFLFDLDGVLYRGNE--AIPGAAEALKRLKAAGKPVIFLTNNSTRSR 54 (269)
T ss_pred cCEEEEcCcCceEeCCc--cCchHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 34688999999998875 3666666666655543 5666543
Done!