Query 004141
Match_columns 771
No_of_seqs 583 out of 4422
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 18:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 3.7E-48 8E-53 435.6 54.6 608 33-771 8-618 (620)
2 PRK10115 protease 2; Provision 100.0 5.7E-42 1.2E-46 386.9 57.8 527 101-770 129-676 (686)
3 KOG2100 Dipeptidyl aminopeptid 100.0 3E-34 6.5E-39 324.1 52.0 613 48-770 103-748 (755)
4 KOG2281 Dipeptidyl aminopeptid 100.0 1.2E-31 2.5E-36 275.3 37.5 339 401-768 516-866 (867)
5 PRK01029 tolB translocation pr 100.0 1.5E-28 3.3E-33 264.6 29.8 288 26-444 130-426 (428)
6 PF00326 Peptidase_S9: Prolyl 100.0 5.8E-30 1.2E-34 251.8 14.9 206 554-771 2-211 (213)
7 COG1505 Serine proteases of th 100.0 2.2E-26 4.9E-31 237.6 37.2 345 392-771 300-648 (648)
8 PRK03629 tolB translocation pr 100.0 9.7E-27 2.1E-31 252.0 31.1 281 25-442 146-427 (429)
9 COG1770 PtrB Protease II [Amin 100.0 2.2E-24 4.8E-29 226.1 43.8 535 105-750 80-658 (682)
10 PRK05137 tolB translocation pr 99.9 1.4E-25 3E-30 244.7 31.1 281 25-442 148-432 (435)
11 PRK04792 tolB translocation pr 99.9 2.8E-25 6.2E-30 241.4 30.8 281 25-442 165-446 (448)
12 PRK04922 tolB translocation pr 99.9 6.9E-25 1.5E-29 238.9 30.3 282 25-442 150-432 (433)
13 PRK02889 tolB translocation pr 99.9 8.3E-25 1.8E-29 237.3 30.4 278 25-442 146-424 (427)
14 PRK04043 tolB translocation pr 99.9 7.7E-25 1.7E-29 233.9 29.0 255 55-433 156-412 (419)
15 PRK00178 tolB translocation pr 99.9 3.7E-24 8.1E-29 234.2 31.7 282 25-442 145-427 (430)
16 KOG2237 Predicted serine prote 99.9 1.7E-22 3.7E-27 209.9 40.0 302 442-770 391-706 (712)
17 PRK01742 tolB translocation pr 99.9 4.8E-23 1E-27 223.9 30.0 274 25-442 151-425 (429)
18 PRK05137 tolB translocation pr 99.9 4.4E-23 9.5E-28 225.1 27.4 245 109-468 164-414 (435)
19 PRK04043 tolB translocation pr 99.9 7.6E-23 1.6E-27 218.6 27.3 239 111-468 155-402 (419)
20 PRK01029 tolB translocation pr 99.9 8E-23 1.7E-27 220.3 26.6 251 104-468 142-405 (428)
21 PRK03629 tolB translocation pr 99.9 3.8E-22 8.2E-27 216.2 27.5 241 111-467 164-407 (429)
22 PRK02889 tolB translocation pr 99.9 6.2E-22 1.3E-26 214.9 27.3 239 111-466 164-403 (427)
23 PRK04792 tolB translocation pr 99.9 1.7E-21 3.7E-26 211.8 27.8 241 110-466 182-425 (448)
24 PRK04922 tolB translocation pr 99.9 4.6E-21 1E-25 208.9 27.3 243 109-467 166-412 (433)
25 PRK00178 tolB translocation pr 99.9 5.2E-21 1.1E-25 209.4 27.7 242 109-466 161-406 (430)
26 TIGR02800 propeller_TolB tol-p 99.9 2.4E-20 5.2E-25 204.1 30.7 254 53-433 155-409 (417)
27 PRK13604 luxD acyl transferase 99.9 4.7E-21 1E-25 190.5 22.2 223 514-750 15-246 (307)
28 PF00930 DPPIV_N: Dipeptidyl p 99.9 2.3E-21 4.9E-26 205.1 20.6 330 50-458 1-353 (353)
29 COG0823 TolB Periplasmic compo 99.9 1.2E-20 2.7E-25 199.5 24.3 270 24-429 139-410 (425)
30 PRK10566 esterase; Provisional 99.9 8.2E-21 1.8E-25 192.1 21.5 230 522-770 13-249 (249)
31 KOG1455 Lysophospholipase [Lip 99.9 5E-21 1.1E-25 183.6 18.2 250 512-769 31-312 (313)
32 PLN02298 hydrolase, alpha/beta 99.9 1.5E-20 3.2E-25 198.5 23.2 246 513-770 37-318 (330)
33 PHA02857 monoglyceride lipase; 99.9 8E-21 1.7E-25 195.4 20.6 243 513-770 5-274 (276)
34 PLN02385 hydrolase; alpha/beta 99.9 2.2E-20 4.8E-25 198.2 22.1 249 513-770 66-346 (349)
35 PRK01742 tolB translocation pr 99.8 2E-19 4.3E-24 195.6 26.2 232 110-464 168-402 (429)
36 PLN02442 S-formylglutathione h 99.8 1.7E-19 3.7E-24 184.1 20.5 233 517-771 28-282 (283)
37 TIGR02800 propeller_TolB tol-p 99.8 8.3E-19 1.8E-23 191.9 27.4 243 107-465 152-396 (417)
38 PRK05077 frsA fermentation/res 99.8 2.2E-19 4.7E-24 192.4 21.7 232 515-771 175-414 (414)
39 PRK10749 lysophospholipase L2; 99.8 6.9E-19 1.5E-23 185.0 24.9 248 512-769 34-329 (330)
40 PF01738 DLH: Dienelactone hyd 99.8 5.8E-20 1.3E-24 181.2 15.0 204 521-770 1-218 (218)
41 TIGR02821 fghA_ester_D S-formy 99.8 1.4E-18 3.1E-23 177.2 21.6 233 517-770 23-275 (275)
42 COG1647 Esterase/lipase [Gener 99.8 2.9E-19 6.2E-24 162.6 13.5 211 537-767 15-242 (243)
43 PLN02652 hydrolase; alpha/beta 99.8 1.2E-18 2.5E-23 185.0 20.4 246 513-771 115-389 (395)
44 COG0823 TolB Periplasmic compo 99.8 3.8E-18 8.2E-23 180.7 22.5 206 156-466 196-402 (425)
45 PRK10162 acetyl esterase; Prov 99.8 2.9E-18 6.2E-23 178.3 20.1 231 520-771 68-317 (318)
46 COG0412 Dienelactone hydrolase 99.8 7E-18 1.5E-22 165.6 20.8 207 518-771 11-235 (236)
47 COG2267 PldB Lysophospholipase 99.8 4.3E-18 9.2E-23 173.7 19.9 244 512-770 13-295 (298)
48 KOG1552 Predicted alpha/beta h 99.8 7.4E-18 1.6E-22 158.9 16.5 209 515-769 42-252 (258)
49 PF05448 AXE1: Acetyl xylan es 99.8 2.1E-17 4.5E-22 169.3 18.6 241 512-769 60-320 (320)
50 PRK05371 x-prolyl-dipeptidyl a 99.8 1.1E-16 2.4E-21 182.5 26.2 209 557-771 270-521 (767)
51 PRK11460 putative hydrolase; P 99.8 7.5E-17 1.6E-21 159.5 21.2 186 534-770 13-209 (232)
52 PRK00870 haloalkane dehalogena 99.7 1.4E-16 3.1E-21 165.9 21.6 220 537-769 46-301 (302)
53 COG0657 Aes Esterase/lipase [L 99.7 6.6E-17 1.4E-21 168.8 17.1 233 518-770 61-311 (312)
54 TIGR01840 esterase_phb esteras 99.7 1.2E-16 2.6E-21 156.5 17.1 192 523-733 1-197 (212)
55 KOG1515 Arylacetamide deacetyl 99.7 1.8E-16 4E-21 160.8 18.5 231 520-769 73-335 (336)
56 PLN02511 hydrolase 99.7 1.8E-16 3.9E-21 169.4 18.8 243 516-770 79-366 (388)
57 TIGR03343 biphenyl_bphD 2-hydr 99.7 1.8E-16 3.9E-21 163.8 17.7 217 537-767 30-281 (282)
58 KOG4391 Predicted alpha/beta h 99.7 7.5E-17 1.6E-21 145.2 12.1 224 512-769 58-282 (300)
59 PRK10985 putative hydrolase; P 99.7 4.2E-16 9.1E-21 163.3 19.9 225 534-770 55-321 (324)
60 TIGR01607 PST-A Plasmodium sub 99.7 5.2E-16 1.1E-20 162.5 20.2 245 514-767 3-331 (332)
61 COG4946 Uncharacterized protei 99.7 3.1E-15 6.6E-20 149.2 23.6 334 45-459 44-515 (668)
62 PLN02824 hydrolase, alpha/beta 99.7 3.1E-16 6.7E-21 162.8 17.1 219 538-769 30-294 (294)
63 TIGR02240 PHA_depoly_arom poly 99.7 6.6E-16 1.4E-20 158.7 19.3 229 517-769 10-266 (276)
64 TIGR03611 RutD pyrimidine util 99.7 4.4E-16 9.5E-21 158.3 17.3 216 535-767 11-256 (257)
65 KOG4178 Soluble epoxide hydrol 99.7 1.5E-15 3.2E-20 149.0 19.9 225 533-770 40-321 (322)
66 PLN02965 Probable pheophorbida 99.7 1.1E-15 2.5E-20 154.8 19.9 214 539-768 5-252 (255)
67 COG3458 Acetyl esterase (deace 99.7 3.5E-16 7.7E-21 146.5 14.0 240 511-768 59-316 (321)
68 PRK03592 haloalkane dehalogena 99.7 4E-15 8.6E-20 154.6 22.2 216 537-769 27-289 (295)
69 PRK10673 acyl-CoA esterase; Pr 99.7 1.3E-15 2.8E-20 154.8 18.2 217 533-768 12-254 (255)
70 TIGR00976 /NonD putative hydro 99.7 2.5E-15 5.5E-20 168.5 21.8 130 516-654 4-135 (550)
71 PF12695 Abhydrolase_5: Alpha/ 99.7 1.6E-15 3.5E-20 139.3 16.0 145 539-748 1-145 (145)
72 TIGR02427 protocat_pcaD 3-oxoa 99.7 9.4E-16 2E-20 155.0 14.4 213 536-766 12-250 (251)
73 PLN03087 BODYGUARD 1 domain co 99.7 4.7E-15 1E-19 159.3 20.2 237 514-768 181-478 (481)
74 KOG0271 Notchless-like WD40 re 99.7 1.3E-14 2.9E-19 141.1 21.1 303 92-448 109-467 (480)
75 PLN02679 hydrolase, alpha/beta 99.7 6.5E-15 1.4E-19 156.5 21.0 219 537-768 88-356 (360)
76 PF07859 Abhydrolase_3: alpha/ 99.7 5.7E-16 1.2E-20 152.3 11.5 189 540-750 1-210 (211)
77 TIGR03056 bchO_mg_che_rel puta 99.6 4.7E-15 1E-19 152.8 18.5 215 536-767 27-278 (278)
78 TIGR03100 hydr1_PEP hydrolase, 99.6 1.5E-15 3.2E-20 155.0 14.2 238 516-768 9-274 (274)
79 PF06500 DUF1100: Alpha/beta h 99.6 3.2E-15 7E-20 153.3 15.0 226 518-770 174-410 (411)
80 COG0429 Predicted hydrolase of 99.6 1.9E-14 4.2E-19 140.5 19.6 241 516-770 57-341 (345)
81 PF02230 Abhydrolase_2: Phosph 99.6 6.2E-15 1.3E-19 144.8 16.0 191 533-770 10-216 (216)
82 PF02129 Peptidase_S15: X-Pro 99.6 1.3E-15 2.7E-20 155.4 11.5 222 517-748 1-271 (272)
83 PRK11071 esterase YqiA; Provis 99.6 1.3E-14 2.9E-19 138.4 17.6 182 538-767 2-189 (190)
84 PLN02894 hydrolase, alpha/beta 99.6 1.9E-14 4.1E-19 154.5 20.7 222 535-771 103-387 (402)
85 TIGR01250 pro_imino_pep_2 prol 99.6 1.3E-14 2.9E-19 150.1 18.6 218 536-767 24-288 (288)
86 PF00930 DPPIV_N: Dipeptidyl p 99.6 2.8E-14 6.1E-19 151.1 21.2 262 107-466 1-315 (353)
87 TIGR03695 menH_SHCHC 2-succiny 99.6 1.3E-14 2.8E-19 146.5 17.2 212 538-766 2-250 (251)
88 TIGR01738 bioH putative pimelo 99.6 6.4E-15 1.4E-19 148.3 13.1 207 537-766 4-245 (245)
89 TIGR01249 pro_imino_pep_1 prol 99.6 7.6E-14 1.7E-18 145.4 20.8 229 517-770 13-306 (306)
90 PRK06489 hypothetical protein; 99.6 1.8E-14 3.8E-19 153.5 16.0 221 537-770 69-358 (360)
91 PRK03204 haloalkane dehalogena 99.6 3.4E-14 7.4E-19 146.2 17.3 210 537-766 34-285 (286)
92 PRK07581 hypothetical protein; 99.6 1.6E-14 3.4E-19 153.1 15.0 238 518-770 25-337 (339)
93 TIGR01392 homoserO_Ac_trn homo 99.6 3.6E-14 7.9E-19 150.7 17.4 245 517-767 14-351 (351)
94 PF12697 Abhydrolase_6: Alpha/ 99.6 6E-15 1.3E-19 146.5 10.7 196 540-750 1-218 (228)
95 COG2945 Predicted hydrolase of 99.6 5.9E-14 1.3E-18 125.3 15.3 194 514-767 9-205 (210)
96 PRK10349 carboxylesterase BioH 99.6 2.3E-14 5.1E-19 145.5 14.8 207 538-767 14-254 (256)
97 PLN00021 chlorophyllase 99.6 1.5E-13 3.3E-18 140.9 20.7 182 519-749 37-241 (313)
98 PF14583 Pectate_lyase22: Olig 99.6 3E-14 6.6E-19 144.1 14.9 314 82-466 19-383 (386)
99 PRK14875 acetoin dehydrogenase 99.6 4E-14 8.8E-19 152.5 16.5 213 535-768 129-370 (371)
100 PLN02578 hydrolase 99.6 7.8E-14 1.7E-18 148.1 18.1 210 538-767 87-353 (354)
101 PRK00175 metX homoserine O-ace 99.6 7.5E-14 1.6E-18 149.3 18.0 246 518-769 32-374 (379)
102 KOG4667 Predicted esterase [Li 99.6 6.3E-14 1.4E-18 126.7 14.4 209 535-755 31-246 (269)
103 PLN02872 triacylglycerol lipas 99.6 4.9E-14 1.1E-18 149.0 15.9 248 515-770 51-390 (395)
104 COG0400 Predicted esterase [Ge 99.6 2E-13 4.3E-18 129.3 17.8 188 533-770 14-206 (207)
105 TIGR01836 PHA_synth_III_C poly 99.6 9.2E-14 2E-18 147.5 17.4 236 521-769 48-350 (350)
106 PF10503 Esterase_phd: Esteras 99.5 1.2E-13 2.6E-18 132.3 15.6 193 522-733 2-198 (220)
107 TIGR03101 hydr2_PEP hydrolase, 99.5 6.8E-13 1.5E-17 132.1 21.4 220 515-745 6-243 (266)
108 KOG4409 Predicted hydrolase/ac 99.5 2.1E-13 4.6E-18 134.0 17.3 222 535-769 88-364 (365)
109 COG4099 Predicted peptidase [G 99.5 4.9E-14 1.1E-18 133.5 12.2 177 515-743 168-354 (387)
110 PRK11126 2-succinyl-6-hydroxy- 99.5 1.6E-13 3.5E-18 138.1 16.9 206 537-768 2-241 (242)
111 PLN03084 alpha/beta hydrolase 99.5 4E-13 8.7E-18 141.9 19.7 217 536-767 126-382 (383)
112 PLN02211 methyl indole-3-aceta 99.5 4.7E-13 1E-17 136.3 18.7 216 535-766 16-267 (273)
113 KOG1838 Alpha/beta hydrolase [ 99.5 2E-12 4.4E-17 131.7 21.0 243 516-769 101-388 (409)
114 PF12715 Abhydrolase_7: Abhydr 99.5 1.4E-13 3E-18 138.6 10.7 215 512-745 92-344 (390)
115 KOG1454 Predicted hydrolase/ac 99.5 4.7E-13 1E-17 138.1 14.3 220 535-770 56-325 (326)
116 KOG3043 Predicted hydrolase re 99.5 1E-12 2.3E-17 120.4 14.1 199 521-771 28-242 (242)
117 PF08840 BAAT_C: BAAT / Acyl-C 99.5 4.6E-13 9.9E-18 130.0 12.3 174 597-771 3-212 (213)
118 PRK08775 homoserine O-acetyltr 99.5 1E-12 2.2E-17 139.2 15.6 198 555-768 85-338 (343)
119 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.3E-10 2.7E-15 121.1 30.2 247 101-468 33-281 (300)
120 PRK06765 homoserine O-acetyltr 99.4 4E-12 8.7E-17 134.6 15.9 244 519-768 41-387 (389)
121 KOG0271 Notchless-like WD40 re 99.4 5.7E-12 1.2E-16 123.0 13.5 126 212-404 340-467 (480)
122 PLN02980 2-oxoglutarate decarb 99.4 8.2E-12 1.8E-16 155.1 18.0 224 536-769 1370-1639(1655)
123 COG3509 LpqC Poly(3-hydroxybut 99.4 3.4E-11 7.4E-16 115.8 17.9 130 515-651 41-179 (312)
124 PF14583 Pectate_lyase22: Olig 99.3 4.5E-11 9.8E-16 121.3 18.5 309 47-421 41-383 (386)
125 PRK05855 short chain dehydroge 99.3 1.3E-11 2.9E-16 141.6 14.8 233 515-769 9-292 (582)
126 KOG2984 Predicted hydrolase [G 99.3 1.5E-12 3.2E-17 116.5 5.2 208 538-768 43-275 (277)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 1.2E-09 2.7E-14 113.6 26.4 204 101-429 75-288 (300)
128 PRK10439 enterobactin/ferric e 99.3 1.8E-10 3.9E-15 122.7 20.1 194 518-749 191-392 (411)
129 COG4946 Uncharacterized protei 99.3 4.5E-10 9.8E-15 112.9 21.4 294 52-467 331-655 (668)
130 KOG0315 G-protein beta subunit 99.3 2.1E-10 4.6E-15 106.1 17.4 250 99-429 41-296 (311)
131 TIGR01838 PHA_synth_I poly(R)- 99.3 6.4E-11 1.4E-15 128.8 16.5 216 521-750 174-457 (532)
132 COG2936 Predicted acyl esteras 99.3 9.1E-11 2E-15 125.0 17.1 129 516-653 27-161 (563)
133 KOG4627 Kynurenine formamidase 99.3 3.2E-11 6.8E-16 108.4 10.1 180 535-748 65-247 (270)
134 PF10282 Lactonase: Lactonase, 99.2 2.5E-09 5.4E-14 113.0 25.7 269 50-429 45-332 (345)
135 KOG0293 WD40 repeat-containing 99.2 4.7E-10 1E-14 110.9 17.8 276 99-452 225-502 (519)
136 PF00756 Esterase: Putative es 99.2 1E-11 2.2E-16 125.7 5.9 204 518-749 5-237 (251)
137 PRK11028 6-phosphogluconolacto 99.2 2.1E-08 4.6E-13 105.8 31.5 257 100-465 36-303 (330)
138 PF05728 UPF0227: Uncharacteri 99.2 7.6E-10 1.6E-14 103.8 18.0 182 540-766 2-186 (187)
139 PF02897 Peptidase_S9_N: Proly 99.2 9.3E-09 2E-13 112.2 29.4 273 102-469 127-407 (414)
140 PRK11028 6-phosphogluconolacto 99.2 6.8E-09 1.5E-13 109.6 27.2 256 49-429 42-314 (330)
141 PF12740 Chlorophyllase2: Chlo 99.2 3.8E-10 8.3E-15 109.4 15.9 177 523-748 6-205 (259)
142 COG2706 3-carboxymuconate cycl 99.2 1.2E-08 2.5E-13 100.6 26.1 228 101-431 91-333 (346)
143 COG4757 Predicted alpha/beta h 99.2 3.3E-10 7.2E-15 104.3 13.5 241 514-766 11-280 (281)
144 PRK07868 acyl-CoA synthetase; 99.2 5.1E-10 1.1E-14 134.6 18.7 234 521-769 49-361 (994)
145 PF03583 LIP: Secretory lipase 99.2 1.3E-09 2.8E-14 111.1 17.8 204 557-770 17-282 (290)
146 KOG3101 Esterase D [General fu 99.2 2.6E-10 5.7E-15 103.0 10.7 216 518-750 25-263 (283)
147 PF10282 Lactonase: Lactonase, 99.1 3.5E-08 7.6E-13 104.3 28.5 284 72-465 13-321 (345)
148 PF08538 DUF1749: Protein of u 99.1 3.3E-10 7.1E-15 111.9 12.0 223 536-767 32-303 (303)
149 KOG0272 U4/U6 small nuclear ri 99.1 2.4E-09 5.1E-14 106.5 17.5 267 100-450 177-448 (459)
150 KOG0318 WD40 repeat stress pro 99.1 2.3E-08 4.9E-13 102.3 24.8 235 67-338 76-342 (603)
151 KOG0318 WD40 repeat stress pro 99.1 3.9E-08 8.4E-13 100.6 26.2 253 30-361 6-269 (603)
152 cd00200 WD40 WD40 domain, foun 99.1 9.9E-09 2.2E-13 105.2 22.9 268 99-451 10-280 (289)
153 KOG0279 G protein beta subunit 99.1 7.2E-09 1.6E-13 97.8 19.2 230 69-418 82-312 (315)
154 KOG0279 G protein beta subunit 99.1 3E-08 6.4E-13 93.7 23.1 249 71-452 37-303 (315)
155 COG2706 3-carboxymuconate cycl 99.1 1.3E-07 2.8E-12 93.4 28.1 289 72-468 16-325 (346)
156 PF00561 Abhydrolase_1: alpha/ 99.1 5.6E-11 1.2E-15 118.4 4.8 174 567-750 1-217 (230)
157 KOG2564 Predicted acetyltransf 99.1 2.7E-09 5.7E-14 101.3 15.0 105 520-636 61-166 (343)
158 PRK13616 lipoprotein LpqB; Pro 99.1 8.1E-09 1.8E-13 114.7 19.6 104 46-171 354-466 (591)
159 KOG0273 Beta-transducin family 99.0 9.7E-09 2.1E-13 103.6 17.8 269 99-453 236-514 (524)
160 PF07224 Chlorophyllase: Chlor 99.0 6.9E-09 1.5E-13 97.8 15.6 117 520-652 32-158 (307)
161 KOG0272 U4/U6 small nuclear ri 99.0 4.1E-09 9E-14 104.8 14.5 237 99-417 218-458 (459)
162 KOG0266 WD40 repeat-containing 99.0 1.2E-08 2.6E-13 111.8 19.7 282 99-461 160-451 (456)
163 KOG0291 WD40-repeat-containing 99.0 2.8E-08 6E-13 105.9 21.2 252 99-426 351-617 (893)
164 PF08662 eIF2A: Eukaryotic tra 99.0 4.6E-09 1E-13 100.4 14.3 154 157-408 10-163 (194)
165 cd00312 Esterase_lipase Estera 99.0 6.8E-10 1.5E-14 124.0 9.7 128 521-652 79-214 (493)
166 KOG2055 WD40 repeat protein [G 99.0 1.3E-08 2.8E-13 102.5 17.4 249 99-469 214-470 (514)
167 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.6E-07 3.4E-12 96.8 25.8 125 320-468 197-332 (352)
168 KOG2382 Predicted alpha/beta h 99.0 8.7E-09 1.9E-13 101.9 15.7 224 533-770 48-314 (315)
169 COG3571 Predicted hydrolase of 99.0 1.5E-08 3.3E-13 87.6 15.1 186 536-768 13-210 (213)
170 KOG0286 G-protein beta subunit 99.0 6.7E-08 1.4E-12 91.9 20.6 262 99-445 56-328 (343)
171 PF08662 eIF2A: Eukaryotic tra 99.0 1.9E-08 4.1E-13 96.2 17.5 165 101-358 8-180 (194)
172 PF03403 PAF-AH_p_II: Platelet 99.0 4.6E-09 1E-13 110.7 13.8 190 535-771 98-360 (379)
173 KOG0772 Uncharacterized conser 99.0 5.9E-08 1.3E-12 99.0 20.4 282 62-453 179-478 (641)
174 PRK13616 lipoprotein LpqB; Pro 99.0 2.8E-08 6E-13 110.5 19.5 179 155-427 352-533 (591)
175 cd00200 WD40 WD40 domain, foun 99.0 9.1E-08 2E-12 97.9 21.6 269 48-416 16-288 (289)
176 PF06342 DUF1057: Alpha/beta h 98.9 8.8E-08 1.9E-12 92.5 19.4 106 533-650 31-136 (297)
177 COG2272 PnbA Carboxylesterase 98.9 2.1E-09 4.5E-14 111.6 8.9 133 515-652 76-218 (491)
178 KOG1407 WD40 repeat protein [F 98.9 2.3E-07 5E-12 87.0 21.1 228 100-456 66-296 (313)
179 COG4188 Predicted dienelactone 98.9 9.5E-09 2.1E-13 103.4 11.9 120 518-639 49-182 (365)
180 KOG0645 WD40 repeat protein [G 98.9 3.7E-07 8E-12 86.1 21.5 227 99-418 62-310 (312)
181 KOG1446 Histone H3 (Lys4) meth 98.9 4.4E-07 9.5E-12 87.7 22.1 254 99-431 15-272 (311)
182 KOG2112 Lysophospholipase [Lip 98.9 4.4E-08 9.4E-13 90.2 14.6 188 537-768 3-203 (206)
183 COG3208 GrsT Predicted thioest 98.9 2.4E-08 5.3E-13 94.4 13.2 205 535-766 6-233 (244)
184 COG2382 Fes Enterochelin ester 98.9 4.9E-08 1.1E-12 95.3 15.4 208 521-770 82-296 (299)
185 KOG0266 WD40 repeat-containing 98.9 9.7E-08 2.1E-12 104.6 19.9 238 98-418 203-453 (456)
186 PF02239 Cytochrom_D1: Cytochr 98.9 5.2E-07 1.1E-11 95.3 24.5 263 102-467 40-348 (369)
187 TIGR01839 PHA_synth_II poly(R) 98.9 5.2E-08 1.1E-12 104.9 16.3 211 521-748 201-481 (560)
188 PTZ00421 coronin; Provisional 98.9 4.8E-07 1E-11 99.0 23.6 182 218-468 98-292 (493)
189 KOG0315 G-protein beta subunit 98.9 4.7E-07 1E-11 84.3 19.7 252 125-453 20-279 (311)
190 PF10340 DUF2424: Protein of u 98.9 6.4E-08 1.4E-12 99.0 15.6 203 523-749 108-350 (374)
191 PF00135 COesterase: Carboxyle 98.8 3.3E-09 7.2E-14 120.4 7.1 128 521-650 109-244 (535)
192 PTZ00421 coronin; Provisional 98.8 9.8E-07 2.1E-11 96.6 25.7 214 99-428 76-297 (493)
193 KOG2055 WD40 repeat protein [G 98.8 8E-08 1.7E-12 96.9 15.6 241 50-419 266-512 (514)
194 KOG2624 Triglyceride lipase-ch 98.8 4.5E-08 9.8E-13 102.1 14.5 230 535-769 71-398 (403)
195 PF06821 Ser_hydrolase: Serine 98.8 5.8E-08 1.3E-12 90.2 13.6 168 540-767 1-170 (171)
196 COG0627 Predicted esterase [Ge 98.8 3.4E-08 7.5E-13 100.3 12.7 223 533-771 50-313 (316)
197 COG2021 MET2 Homoserine acetyl 98.8 1.2E-07 2.7E-12 95.1 16.4 229 534-768 48-367 (368)
198 KOG0263 Transcription initiati 98.8 7.8E-07 1.7E-11 95.9 23.3 198 99-358 452-650 (707)
199 PF09752 DUF2048: Uncharacteri 98.8 1.4E-07 2.9E-12 94.9 16.5 234 521-766 77-346 (348)
200 KOG0275 Conserved WD40 repeat- 98.8 9.1E-08 2E-12 91.9 14.4 248 100-468 215-469 (508)
201 KOG0293 WD40 repeat-containing 98.8 7.9E-08 1.7E-12 95.5 13.8 274 49-419 232-513 (519)
202 COG0596 MhpC Predicted hydrola 98.8 1.4E-07 3.1E-12 95.6 16.5 101 537-651 21-123 (282)
203 KOG0973 Histone transcription 98.8 1.5E-07 3.3E-12 104.8 17.4 149 98-337 69-240 (942)
204 KOG0265 U5 snRNP-specific prot 98.8 7.8E-07 1.7E-11 85.2 19.6 284 99-463 48-335 (338)
205 cd00707 Pancreat_lipase_like P 98.8 2.5E-08 5.4E-13 101.1 10.1 112 536-652 35-148 (275)
206 TIGR03230 lipo_lipase lipoprot 98.8 5.1E-08 1.1E-12 103.2 11.9 112 536-651 40-154 (442)
207 KOG2096 WD40 repeat protein [G 98.8 1.4E-06 3E-11 84.0 20.1 296 50-452 86-393 (420)
208 PF02273 Acyl_transf_2: Acyl t 98.8 1.5E-07 3.3E-12 87.8 13.2 221 516-750 10-239 (294)
209 PTZ00420 coronin; Provisional 98.7 4.6E-06 9.9E-11 92.0 27.0 163 99-358 75-249 (568)
210 TIGR02658 TTQ_MADH_Hv methylam 98.7 1.7E-06 3.7E-11 89.2 21.9 265 49-361 53-334 (352)
211 PF02897 Peptidase_S9_N: Proly 98.7 1.6E-06 3.4E-11 94.8 22.7 264 46-429 128-412 (414)
212 KOG0291 WD40-repeat-containing 98.7 3.4E-06 7.3E-11 90.4 23.3 239 156-466 311-550 (893)
213 KOG0973 Histone transcription 98.7 3E-07 6.6E-12 102.5 16.1 122 238-420 128-252 (942)
214 COG2819 Predicted hydrolase of 98.7 1.9E-06 4.1E-11 83.3 18.5 210 517-767 19-259 (264)
215 PTZ00420 coronin; Provisional 98.7 6.5E-06 1.4E-10 90.7 25.1 156 106-361 34-201 (568)
216 KOG0273 Beta-transducin family 98.6 2.3E-06 5E-11 86.8 18.9 260 62-408 247-513 (524)
217 KOG0305 Anaphase promoting com 98.6 2.2E-06 4.8E-11 90.7 19.7 231 99-452 218-451 (484)
218 TIGR01849 PHB_depoly_PhaZ poly 98.6 3.8E-07 8.3E-12 95.5 13.8 70 700-769 333-406 (406)
219 KOG2139 WD40 repeat protein [G 98.6 3.3E-06 7.2E-11 82.9 19.0 214 99-408 141-365 (445)
220 TIGR03502 lipase_Pla1_cef extr 98.6 1.4E-06 3E-11 98.3 18.4 99 536-636 448-575 (792)
221 KOG0284 Polyadenylation factor 98.6 4.3E-07 9.4E-12 90.3 12.0 239 100-419 98-337 (464)
222 PF03959 FSH1: Serine hydrolas 98.6 1.5E-07 3.2E-12 91.8 8.3 168 536-750 3-203 (212)
223 KOG0263 Transcription initiati 98.6 2.1E-07 4.6E-12 100.2 10.0 192 156-417 455-647 (707)
224 KOG0645 WD40 repeat protein [G 98.6 1.1E-05 2.3E-10 76.5 19.9 150 99-338 15-172 (312)
225 KOG3847 Phospholipase A2 (plat 98.6 1.2E-06 2.6E-11 84.8 13.7 169 533-748 114-328 (399)
226 KOG4497 Uncharacterized conser 98.6 1.4E-06 3.1E-11 84.3 14.1 142 103-338 13-155 (447)
227 KOG4497 Uncharacterized conser 98.5 1.4E-05 3.1E-10 77.5 20.2 103 318-452 320-422 (447)
228 KOG1407 WD40 repeat protein [F 98.5 3.3E-06 7.1E-11 79.4 15.4 209 70-410 85-294 (313)
229 PLN00181 protein SPA1-RELATED; 98.5 1.5E-05 3.3E-10 94.4 24.7 240 99-417 484-736 (793)
230 PF08450 SGL: SMP-30/Gluconola 98.5 2.7E-05 5.9E-10 78.2 23.0 237 102-452 3-245 (246)
231 KOG0286 G-protein beta subunit 98.5 7.7E-06 1.7E-10 78.2 17.1 225 156-453 59-294 (343)
232 KOG2314 Translation initiation 98.5 4.4E-05 9.6E-10 79.3 23.8 294 49-454 257-559 (698)
233 COG1073 Hydrolases of the alph 98.5 1.9E-06 4.1E-11 89.5 14.7 248 519-771 31-299 (299)
234 PRK10115 protease 2; Provision 98.5 3.1E-05 6.6E-10 89.0 25.2 208 155-466 129-346 (686)
235 KOG2314 Translation initiation 98.5 3E-05 6.6E-10 80.5 22.1 250 101-462 213-476 (698)
236 KOG2551 Phospholipase/carboxyh 98.5 4E-06 8.8E-11 77.9 14.3 122 600-770 92-221 (230)
237 KOG0296 Angio-associated migra 98.5 2.2E-05 4.9E-10 77.4 20.0 207 99-430 65-272 (399)
238 KOG0282 mRNA splicing factor [ 98.5 2.7E-06 5.9E-11 86.7 14.1 221 99-426 215-467 (503)
239 PF07433 DUF1513: Protein of u 98.4 6.8E-05 1.5E-09 74.6 22.8 236 100-431 6-257 (305)
240 PRK04940 hypothetical protein; 98.4 4.3E-06 9.3E-11 76.7 12.7 119 616-767 60-178 (180)
241 KOG1553 Predicted alpha/beta h 98.4 1E-06 2.2E-11 86.1 8.5 178 515-719 221-398 (517)
242 KOG0305 Anaphase promoting com 98.4 2.2E-05 4.9E-10 83.2 19.2 238 99-465 178-418 (484)
243 PF06433 Me-amine-dh_H: Methyl 98.4 0.00035 7.7E-09 70.4 26.1 264 100-469 37-323 (342)
244 PF10230 DUF2305: Uncharacteri 98.4 8.6E-06 1.9E-10 82.1 14.9 111 537-651 2-122 (266)
245 KOG0282 mRNA splicing factor [ 98.4 7.1E-06 1.5E-10 83.7 13.9 211 99-416 259-502 (503)
246 PF02239 Cytochrom_D1: Cytochr 98.3 2.1E-05 4.5E-10 83.3 17.8 196 112-429 6-210 (369)
247 KOG1274 WD40 repeat protein [G 98.3 2.4E-05 5.2E-10 86.1 18.0 232 155-450 16-250 (933)
248 PF11339 DUF3141: Protein of u 98.3 1.7E-05 3.6E-10 83.0 16.0 104 534-651 66-176 (581)
249 KOG0284 Polyadenylation factor 98.3 5.2E-06 1.1E-10 82.8 11.8 240 99-419 139-380 (464)
250 PF12146 Hydrolase_4: Putative 98.3 1.3E-06 2.7E-11 69.4 5.7 57 518-583 1-57 (79)
251 KOG0296 Angio-associated migra 98.3 0.00014 3E-09 72.0 20.8 277 99-451 107-387 (399)
252 KOG2096 WD40 repeat protein [G 98.3 7.5E-05 1.6E-09 72.4 18.3 110 240-404 279-389 (420)
253 KOG0275 Conserved WD40 repeat- 98.3 4.6E-06 1E-10 80.4 10.1 252 36-361 212-471 (508)
254 KOG0643 Translation initiation 98.3 6.2E-05 1.3E-09 71.3 17.0 183 210-450 66-249 (327)
255 KOG0278 Serine/threonine kinas 98.3 3.3E-05 7.1E-10 72.3 14.8 176 54-332 104-283 (334)
256 KOG1446 Histone H3 (Lys4) meth 98.3 4.8E-05 1E-09 73.9 16.5 171 69-337 119-294 (311)
257 KOG0772 Uncharacterized conser 98.3 1.1E-05 2.4E-10 82.8 12.8 260 99-465 168-444 (641)
258 KOG1274 WD40 repeat protein [G 98.3 1.9E-05 4.1E-10 86.9 15.3 154 156-358 100-263 (933)
259 PF11144 DUF2920: Protein of u 98.2 3E-05 6.5E-10 79.8 15.7 148 596-743 162-332 (403)
260 KOG2315 Predicted translation 98.2 0.0002 4.3E-09 75.0 21.3 252 43-418 128-389 (566)
261 KOG0771 Prolactin regulatory e 98.2 2.3E-05 5E-10 78.9 13.9 210 100-421 146-356 (398)
262 PLN00181 protein SPA1-RELATED; 98.2 0.00014 3E-09 86.4 23.1 210 99-417 576-791 (793)
263 COG3243 PhaC Poly(3-hydroxyalk 98.2 1.7E-05 3.8E-10 81.0 12.4 90 556-653 129-219 (445)
264 COG3386 Gluconolactonase [Carb 98.1 0.00095 2.1E-08 68.2 24.0 190 219-457 86-280 (307)
265 PF06028 DUF915: Alpha/beta hy 98.1 3.7E-05 8.1E-10 76.0 12.9 209 538-766 12-252 (255)
266 COG3545 Predicted esterase of 98.1 0.00024 5.3E-09 63.8 16.6 139 592-768 38-178 (181)
267 PF06057 VirJ: Bacterial virul 98.1 4E-05 8.6E-10 70.5 12.0 180 539-767 4-190 (192)
268 PF07433 DUF1513: Protein of u 98.1 0.0021 4.6E-08 64.2 25.0 222 52-361 16-251 (305)
269 KOG0643 Translation initiation 98.1 0.00013 2.8E-09 69.2 15.4 215 100-420 95-318 (327)
270 KOG1445 Tumor-specific antigen 98.1 0.00012 2.7E-09 77.1 16.8 142 216-418 698-843 (1012)
271 PF10142 PhoPQ_related: PhoPQ- 98.1 0.00027 5.9E-09 73.2 19.0 151 610-770 166-321 (367)
272 KOG1273 WD40 repeat protein [G 98.1 0.00043 9.4E-09 67.2 18.6 236 69-433 42-292 (405)
273 PF10647 Gmad1: Lipoprotein Lp 98.1 0.00028 6.2E-09 70.6 18.5 175 156-430 27-206 (253)
274 KOG2139 WD40 repeat protein [G 98.1 0.00014 3E-09 71.8 15.1 193 216-468 118-313 (445)
275 KOG1516 Carboxylesterase and r 98.0 1.5E-05 3.2E-10 90.4 9.2 126 521-650 97-231 (545)
276 KOG2315 Predicted translation 98.0 0.00082 1.8E-08 70.5 20.7 152 244-453 222-375 (566)
277 KOG0639 Transducin-like enhanc 98.0 0.00012 2.6E-09 75.2 14.3 214 70-338 438-655 (705)
278 KOG0306 WD40-repeat-containing 98.0 0.0014 3E-08 71.0 22.7 270 94-450 369-652 (888)
279 KOG0288 WD40 repeat protein Ti 98.0 4.2E-05 9.1E-10 76.7 10.5 278 51-416 174-458 (459)
280 KOG0639 Transducin-like enhanc 98.0 0.00019 4.2E-09 73.7 14.8 226 101-450 422-651 (705)
281 KOG0288 WD40 repeat protein Ti 98.0 7.2E-05 1.6E-09 75.1 11.3 270 99-451 176-450 (459)
282 PLN02919 haloacid dehalogenase 97.9 0.02 4.3E-07 69.3 34.1 133 319-468 742-890 (1057)
283 KOG0278 Serine/threonine kinas 97.9 9.3E-05 2E-09 69.3 11.1 194 156-420 104-298 (334)
284 KOG0283 WD40 repeat-containing 97.9 0.0005 1.1E-08 75.5 18.2 99 201-337 374-472 (712)
285 KOG1009 Chromatin assembly com 97.9 0.00016 3.5E-09 72.5 13.0 174 94-333 61-247 (434)
286 KOG4840 Predicted hydrolases o 97.9 0.00054 1.2E-08 63.4 15.3 107 537-654 36-147 (299)
287 COG5354 Uncharacterized protei 97.9 0.0026 5.7E-08 66.0 21.7 179 218-454 202-381 (561)
288 KOG3253 Predicted alpha/beta h 97.9 0.00014 2.9E-09 77.0 12.5 169 536-752 175-349 (784)
289 KOG0319 WD40-repeat-containing 97.9 0.00056 1.2E-08 73.9 17.2 155 99-287 63-221 (775)
290 KOG0640 mRNA cleavage stimulat 97.9 0.00031 6.7E-09 67.9 13.8 281 99-445 113-409 (430)
291 KOG2931 Differentiation-relate 97.9 0.00089 1.9E-08 65.2 16.8 231 520-766 33-303 (326)
292 PF08450 SGL: SMP-30/Gluconola 97.9 0.00086 1.9E-08 67.4 17.8 178 217-466 21-213 (246)
293 KOG0265 U5 snRNP-specific prot 97.8 0.00077 1.7E-08 65.2 15.7 162 216-448 67-232 (338)
294 PF07819 PGAP1: PGAP1-like pro 97.8 0.00011 2.5E-09 71.8 10.6 102 538-648 5-120 (225)
295 KOG0289 mRNA splicing factor [ 97.8 0.007 1.5E-07 61.6 22.9 206 99-429 262-470 (506)
296 KOG0310 Conserved WD40 repeat- 97.8 0.0015 3.2E-08 67.4 17.9 232 99-455 69-302 (487)
297 PF03096 Ndr: Ndr family; Int 97.8 0.00088 1.9E-08 66.2 15.5 232 520-767 10-277 (283)
298 COG3391 Uncharacterized conser 97.8 0.011 2.3E-07 63.4 25.1 187 217-466 95-283 (381)
299 PF10647 Gmad1: Lipoprotein Lp 97.8 0.0031 6.8E-08 63.1 19.5 108 43-174 25-133 (253)
300 KOG1524 WD40 repeat-containing 97.7 0.00022 4.9E-09 73.9 11.2 57 99-170 105-163 (737)
301 PF05677 DUF818: Chlamydia CHL 97.7 0.00027 5.8E-09 70.6 11.4 111 517-637 120-236 (365)
302 PF05705 DUF829: Eukaryotic pr 97.7 0.0004 8.7E-09 69.4 12.5 65 702-766 176-240 (240)
303 KOG0306 WD40-repeat-containing 97.7 0.0011 2.4E-08 71.8 15.9 194 98-418 454-663 (888)
304 KOG1273 WD40 repeat protein [G 97.7 0.002 4.3E-08 62.8 15.8 186 156-451 27-215 (405)
305 COG4947 Uncharacterized protei 97.7 0.00017 3.6E-09 63.7 7.8 114 604-747 91-214 (227)
306 COG3150 Predicted esterase [Ge 97.7 0.00077 1.7E-08 59.7 11.8 142 597-767 42-187 (191)
307 PF00151 Lipase: Lipase; Inte 97.7 4.3E-05 9.4E-10 79.1 4.9 114 534-651 68-187 (331)
308 COG3490 Uncharacterized protei 97.7 0.013 2.8E-07 56.8 20.8 238 101-430 70-319 (366)
309 PF12048 DUF3530: Protein of u 97.7 0.002 4.4E-08 66.3 17.0 207 517-769 70-309 (310)
310 KOG2919 Guanine nucleotide-bin 97.6 0.0034 7.3E-08 61.5 16.8 113 201-358 163-282 (406)
311 KOG0319 WD40-repeat-containing 97.6 0.0047 1E-07 67.0 19.3 297 99-463 193-534 (775)
312 PF07676 PD40: WD40-like Beta 97.6 6.4E-05 1.4E-09 50.6 3.7 29 310-338 2-30 (39)
313 TIGR02171 Fb_sc_TIGR02171 Fibr 97.6 0.0035 7.6E-08 70.9 19.1 97 111-264 319-420 (912)
314 KOG2394 WD40 protein DMR-N9 [G 97.6 0.0011 2.3E-08 69.1 13.9 159 212-419 189-362 (636)
315 COG1506 DAP2 Dipeptidyl aminop 97.6 0.0051 1.1E-07 70.4 21.0 224 100-427 14-259 (620)
316 KOG2106 Uncharacterized conser 97.6 0.0074 1.6E-07 62.6 19.4 154 217-421 427-583 (626)
317 KOG0268 Sof1-like rRNA process 97.6 0.00024 5.2E-09 70.2 8.3 138 216-420 208-346 (433)
318 COG5354 Uncharacterized protei 97.6 0.01 2.2E-07 61.9 20.2 170 99-358 174-349 (561)
319 KOG0295 WD40 repeat-containing 97.6 0.00096 2.1E-08 66.2 12.2 250 157-468 113-366 (406)
320 PF05577 Peptidase_S28: Serine 97.6 0.00032 6.9E-09 76.9 10.1 111 537-651 29-148 (434)
321 KOG2048 WD40 repeat protein [G 97.6 0.0059 1.3E-07 65.7 18.7 157 99-361 26-188 (691)
322 PF01674 Lipase_2: Lipase (cla 97.5 0.00023 5E-09 68.5 7.5 89 540-636 4-95 (219)
323 KOG1539 WD repeat protein [Gen 97.5 0.0028 6.1E-08 69.6 16.3 96 213-355 551-646 (910)
324 COG4814 Uncharacterized protei 97.5 0.0063 1.4E-07 58.1 16.2 209 536-768 45-286 (288)
325 KOG0295 WD40 repeat-containing 97.5 0.00086 1.9E-08 66.5 10.9 211 99-361 151-368 (406)
326 KOG0313 Microtubule binding pr 97.5 0.023 4.9E-07 57.1 20.6 129 239-432 260-389 (423)
327 KOG1524 WD40 repeat-containing 97.5 0.0035 7.5E-08 65.4 15.5 167 156-451 108-275 (737)
328 PLN02733 phosphatidylcholine-s 97.5 0.00021 4.6E-09 76.6 7.2 90 553-651 108-201 (440)
329 KOG2106 Uncharacterized conser 97.5 0.027 5.8E-07 58.6 21.6 260 99-449 247-508 (626)
330 KOG0283 WD40 repeat-containing 97.5 0.003 6.5E-08 69.6 15.8 199 97-418 368-575 (712)
331 KOG0771 Prolactin regulatory e 97.5 0.0018 4E-08 65.6 13.0 209 25-338 132-346 (398)
332 PTZ00472 serine carboxypeptida 97.5 0.0013 2.9E-08 71.7 13.2 131 518-653 60-218 (462)
333 KOG0277 Peroxisomal targeting 97.5 0.002 4.4E-08 60.9 12.1 252 102-427 12-273 (311)
334 KOG0303 Actin-binding protein 97.4 0.0061 1.3E-07 61.3 16.0 146 238-451 130-282 (472)
335 PRK02888 nitrous-oxide reducta 97.4 0.011 2.4E-07 64.9 19.3 40 217-262 214-253 (635)
336 KOG1445 Tumor-specific antigen 97.4 0.0043 9.3E-08 65.9 15.2 120 241-422 679-799 (1012)
337 PF07676 PD40: WD40-like Beta 97.4 0.00025 5.4E-09 47.7 4.2 35 88-127 3-38 (39)
338 KOG2110 Uncharacterized conser 97.3 0.0014 3E-08 65.3 9.8 143 218-421 106-250 (391)
339 COG3386 Gluconolactonase [Carb 97.3 0.0049 1.1E-07 63.0 14.0 78 319-421 113-193 (307)
340 KOG0650 WD40 repeat nucleolar 97.3 0.0097 2.1E-07 63.1 15.9 261 100-462 402-678 (733)
341 KOG0641 WD40 repeat protein [G 97.3 0.091 2E-06 48.9 20.3 130 278-451 161-292 (350)
342 PF04762 IKI3: IKI3 family; I 97.3 0.046 1E-06 64.9 23.7 85 217-336 236-324 (928)
343 KOG0289 mRNA splicing factor [ 97.3 0.0094 2E-07 60.8 15.2 190 100-338 305-498 (506)
344 KOG2048 WD40 repeat protein [G 97.3 0.013 2.7E-07 63.2 16.8 164 99-360 383-551 (691)
345 TIGR02171 Fb_sc_TIGR02171 Fibr 97.3 0.013 2.7E-07 66.6 17.6 98 55-177 320-424 (912)
346 KOG0264 Nucleosome remodeling 97.3 0.036 7.9E-07 57.0 19.3 151 218-419 250-404 (422)
347 KOG0647 mRNA export protein (c 97.2 0.075 1.6E-06 52.0 20.2 110 100-266 29-138 (347)
348 PF15492 Nbas_N: Neuroblastoma 97.2 0.041 8.9E-07 53.6 18.6 56 103-170 2-61 (282)
349 KOG1063 RNA polymerase II elon 97.2 0.058 1.3E-06 58.5 21.4 123 241-420 527-649 (764)
350 PF00975 Thioesterase: Thioest 97.2 0.0013 2.8E-08 65.2 8.8 97 539-649 2-102 (229)
351 KOG0294 WD40 repeat-containing 97.2 0.069 1.5E-06 52.5 19.5 154 39-262 32-187 (362)
352 PF07082 DUF1350: Protein of u 97.2 0.013 2.8E-07 56.6 14.5 192 523-748 8-204 (250)
353 KOG3975 Uncharacterized conser 97.1 0.03 6.5E-07 53.3 16.2 129 518-649 10-145 (301)
354 KOG2394 WD40 protein DMR-N9 [G 97.1 0.00019 4.2E-09 74.5 2.0 92 99-206 291-384 (636)
355 COG3391 Uncharacterized conser 97.1 0.12 2.6E-06 55.4 23.4 210 101-429 76-291 (381)
356 KOG0640 mRNA cleavage stimulat 97.1 0.019 4.1E-07 56.0 14.7 208 49-363 171-389 (430)
357 KOG0303 Actin-binding protein 97.1 0.047 1E-06 55.2 17.9 216 36-356 27-248 (472)
358 KOG1007 WD repeat protein TSSC 97.1 0.053 1.1E-06 52.6 17.5 241 49-338 20-280 (370)
359 KOG1063 RNA polymerase II elon 97.1 0.028 6.1E-07 60.8 17.2 119 148-338 520-640 (764)
360 KOG2565 Predicted hydrolases o 97.1 0.0024 5.2E-08 64.1 8.7 118 517-645 132-258 (469)
361 PF05990 DUF900: Alpha/beta hy 97.1 0.0032 6.9E-08 62.0 9.7 112 535-652 16-138 (233)
362 KOG1332 Vesicle coat complex C 97.0 0.078 1.7E-06 50.3 17.8 62 390-451 209-275 (299)
363 KOG0307 Vesicle coat complex C 97.0 0.0035 7.5E-08 71.5 10.6 288 100-462 8-325 (1049)
364 COG1770 PtrB Protease II [Amin 97.0 0.46 9.9E-06 52.3 25.8 262 49-431 136-406 (682)
365 PLN02919 haloacid dehalogenase 97.0 0.076 1.6E-06 64.4 22.2 91 320-428 686-777 (1057)
366 KOG0307 Vesicle coat complex C 97.0 0.0049 1.1E-07 70.3 11.1 253 100-419 66-327 (1049)
367 KOG4389 Acetylcholinesterase/B 97.0 0.0013 2.9E-08 68.3 6.1 126 521-652 121-256 (601)
368 KOG2110 Uncharacterized conser 97.0 0.11 2.5E-06 52.1 19.0 98 217-358 152-251 (391)
369 KOG1539 WD repeat protein [Gen 96.9 0.01 2.2E-07 65.4 12.7 90 279-418 555-645 (910)
370 KOG0316 Conserved WD40 repeat- 96.9 0.11 2.3E-06 49.1 17.4 198 99-364 18-220 (307)
371 PF04762 IKI3: IKI3 family; I 96.9 0.27 5.9E-06 58.6 25.6 110 318-452 211-324 (928)
372 KOG0302 Ribosome Assembly prot 96.9 0.05 1.1E-06 54.7 16.2 150 209-420 225-379 (440)
373 KOG2919 Guanine nucleotide-bin 96.9 0.041 8.9E-07 54.2 15.2 35 223-262 235-269 (406)
374 KOG0310 Conserved WD40 repeat- 96.9 0.047 1E-06 56.8 16.3 186 99-407 111-298 (487)
375 KOG1332 Vesicle coat complex C 96.9 0.089 1.9E-06 49.9 16.6 160 218-430 128-296 (299)
376 PRK02888 nitrous-oxide reducta 96.9 0.14 3.1E-06 56.4 20.7 39 218-262 296-339 (635)
377 KOG0641 WD40 repeat protein [G 96.8 0.1 2.2E-06 48.6 16.4 144 213-419 199-349 (350)
378 PF00450 Peptidase_S10: Serine 96.8 0.0096 2.1E-07 65.1 12.2 134 517-653 22-183 (415)
379 KOG1538 Uncharacterized conser 96.8 0.086 1.9E-06 56.9 17.5 91 50-170 21-111 (1081)
380 KOG1009 Chromatin assembly com 96.7 0.031 6.8E-07 56.7 13.3 62 241-338 125-187 (434)
381 KOG0292 Vesicle coat complex C 96.7 0.085 1.8E-06 58.9 17.2 257 99-420 10-281 (1202)
382 PF06977 SdiA-regulated: SdiA- 96.7 0.16 3.4E-06 50.2 17.9 200 156-451 25-239 (248)
383 KOG0277 Peroxisomal targeting 96.6 0.031 6.7E-07 53.2 11.7 174 216-452 36-210 (311)
384 KOG1007 WD repeat protein TSSC 96.6 0.11 2.4E-06 50.5 15.5 145 241-451 125-277 (370)
385 KOG3967 Uncharacterized conser 96.6 0.026 5.7E-07 52.1 10.7 111 524-639 89-213 (297)
386 KOG0285 Pleiotropic regulator 96.6 0.14 3E-06 51.2 16.3 229 65-363 166-395 (460)
387 KOG1538 Uncharacterized conser 96.5 0.038 8.2E-07 59.5 13.1 57 100-171 14-72 (1081)
388 COG3490 Uncharacterized protei 96.5 0.13 2.7E-06 50.2 15.4 183 103-362 118-315 (366)
389 KOG0264 Nucleosome remodeling 96.5 0.15 3.2E-06 52.7 16.9 149 210-421 192-349 (422)
390 KOG0316 Conserved WD40 repeat- 96.5 0.055 1.2E-06 50.9 12.6 236 156-468 21-259 (307)
391 COG4782 Uncharacterized protei 96.5 0.0097 2.1E-07 60.2 8.3 113 535-653 114-236 (377)
392 KOG0646 WD40 repeat protein [G 96.5 0.029 6.4E-07 57.9 11.6 215 99-361 82-311 (476)
393 KOG0269 WD40 repeat-containing 96.5 0.034 7.3E-07 61.0 12.6 129 65-253 149-277 (839)
394 PRK10252 entF enterobactin syn 96.5 0.019 4.2E-07 72.8 13.0 99 537-649 1068-1169(1296)
395 KOG0285 Pleiotropic regulator 96.4 0.39 8.4E-06 48.2 18.4 200 97-361 150-352 (460)
396 KOG0299 U3 snoRNP-associated p 96.4 0.19 4.1E-06 52.1 16.7 59 392-451 384-444 (479)
397 PF06977 SdiA-regulated: SdiA- 96.4 0.18 3.9E-06 49.9 16.0 168 99-358 22-202 (248)
398 KOG2183 Prolylcarboxypeptidase 96.4 0.019 4.1E-07 58.8 9.2 91 561-651 106-203 (492)
399 PF04053 Coatomer_WDAD: Coatom 96.3 0.1 2.2E-06 56.4 15.3 38 281-337 127-165 (443)
400 KOG4388 Hormone-sensitive lipa 96.3 0.01 2.2E-07 62.9 7.4 91 535-636 394-489 (880)
401 PF08386 Abhydrolase_4: TAP-li 96.3 0.0087 1.9E-07 50.4 5.5 59 704-767 34-92 (103)
402 KOG4328 WD40 protein [Function 96.2 0.58 1.3E-05 48.6 19.0 205 99-356 187-398 (498)
403 KOG0650 WD40 repeat nucleolar 96.2 0.15 3.2E-06 54.5 15.2 102 154-262 523-626 (733)
404 KOG4378 Nuclear protein COP1 [ 96.2 0.1 2.2E-06 54.4 13.6 138 101-327 167-304 (673)
405 KOG1523 Actin-related protein 96.2 0.13 2.9E-06 50.7 13.6 103 155-336 13-120 (361)
406 PF06433 Me-amine-dh_H: Methyl 96.2 0.14 3E-06 52.2 14.2 160 70-287 155-319 (342)
407 KOG0647 mRNA export protein (c 96.1 1.3 2.8E-05 43.7 19.7 230 55-338 32-273 (347)
408 KOG0268 Sof1-like rRNA process 96.0 0.05 1.1E-06 54.4 9.8 82 218-337 251-336 (433)
409 KOG2321 WD40 repeat protein [G 96.0 0.48 1E-05 50.6 17.4 115 318-466 230-346 (703)
410 KOG1523 Actin-related protein 96.0 0.69 1.5E-05 45.9 17.3 220 100-359 12-238 (361)
411 KOG2111 Uncharacterized conser 95.9 1.5 3.1E-05 43.7 19.4 96 280-420 159-257 (346)
412 COG3204 Uncharacterized protei 95.9 1.3 2.8E-05 43.9 18.9 173 156-429 89-271 (316)
413 COG1075 LipA Predicted acetylt 95.9 0.024 5.2E-07 59.4 7.9 99 539-651 61-164 (336)
414 COG3319 Thioesterase domains o 95.9 0.029 6.2E-07 55.5 7.7 100 538-652 1-104 (257)
415 KOG0269 WD40 repeat-containing 95.8 0.11 2.5E-06 57.1 12.7 142 216-421 154-296 (839)
416 KOG4378 Nuclear protein COP1 [ 95.8 1 2.2E-05 47.3 18.7 139 217-423 142-282 (673)
417 PF13360 PQQ_2: PQQ-like domai 95.8 2.1 4.5E-05 42.3 21.5 61 399-469 173-233 (238)
418 TIGR03712 acc_sec_asp2 accesso 95.8 0.4 8.7E-06 50.9 16.1 122 518-659 275-398 (511)
419 KOG2182 Hydrolytic enzymes of 95.8 0.044 9.5E-07 57.9 9.1 136 512-651 62-207 (514)
420 KOG1920 IkappaB kinase complex 95.7 4.2 9.1E-05 48.0 25.0 85 218-337 222-310 (1265)
421 KOG1408 WD40 repeat protein [F 95.7 0.14 3.1E-06 55.7 12.4 104 101-266 40-145 (1080)
422 KOG2321 WD40 repeat protein [G 95.6 0.66 1.4E-05 49.6 16.7 113 240-419 229-343 (703)
423 KOG0292 Vesicle coat complex C 95.6 0.45 9.8E-06 53.5 16.1 233 156-448 13-266 (1202)
424 KOG1963 WD40 repeat protein [G 95.6 2.1 4.4E-05 48.4 21.2 60 99-173 252-313 (792)
425 KOG0290 Conserved WD40 repeat- 95.6 0.86 1.9E-05 44.6 16.0 170 218-452 173-356 (364)
426 KOG1282 Serine carboxypeptidas 95.5 0.12 2.5E-06 55.6 11.0 136 516-653 54-215 (454)
427 KOG4328 WD40 protein [Function 95.4 0.32 6.9E-06 50.4 13.2 170 216-451 208-388 (498)
428 PLN03016 sinapoylglucose-malat 95.2 0.15 3.2E-06 55.2 11.1 132 518-653 49-212 (433)
429 PF05057 DUF676: Putative seri 95.2 0.03 6.4E-07 54.7 5.2 22 615-636 77-98 (217)
430 KOG1036 Mitotic spindle checkp 95.2 3.3 7.1E-05 41.1 18.7 59 391-452 235-294 (323)
431 PF11187 DUF2974: Protein of u 95.2 0.034 7.4E-07 54.1 5.5 49 601-649 69-121 (224)
432 KOG3724 Negative regulator of 95.1 0.066 1.4E-06 59.4 7.9 47 596-643 155-208 (973)
433 KOG0313 Microtubule binding pr 95.1 2.8 6E-05 42.8 18.3 99 216-360 279-379 (423)
434 KOG1920 IkappaB kinase complex 94.9 1.6 3.6E-05 51.1 18.5 60 101-174 71-131 (1265)
435 PF13449 Phytase-like: Esteras 94.9 5.7 0.00012 41.6 21.6 98 316-422 146-252 (326)
436 KOG1963 WD40 repeat protein [G 94.8 0.61 1.3E-05 52.4 14.2 94 101-253 208-306 (792)
437 PLN02209 serine carboxypeptida 94.7 0.29 6.3E-06 53.0 11.5 134 517-653 50-214 (437)
438 KOG0299 U3 snoRNP-associated p 94.6 0.18 4E-06 52.1 9.1 135 236-420 139-275 (479)
439 KOG2041 WD40 repeat protein [G 94.5 2.4 5.2E-05 46.7 17.4 57 100-170 117-174 (1189)
440 KOG0294 WD40 repeat-containing 94.5 5.7 0.00012 39.6 22.6 83 217-337 106-189 (362)
441 COG3204 Uncharacterized protei 94.5 3.9 8.4E-05 40.6 17.3 58 99-167 86-143 (316)
442 COG4257 Vgb Streptogramin lyas 94.5 2.4 5.3E-05 41.4 15.6 176 216-466 81-262 (353)
443 KOG4283 Transcription-coupled 94.5 0.62 1.3E-05 45.6 11.7 156 213-432 61-232 (397)
444 KOG1408 WD40 repeat protein [F 94.4 0.3 6.5E-06 53.4 10.5 87 218-338 58-144 (1080)
445 PF07519 Tannase: Tannase and 94.4 0.13 2.9E-06 56.4 8.2 128 520-654 16-153 (474)
446 KOG0267 Microtubule severing p 94.3 0.18 4E-06 55.1 8.7 177 54-253 74-252 (825)
447 KOG0302 Ribosome Assembly prot 94.3 0.88 1.9E-05 46.2 12.8 150 52-262 213-366 (440)
448 COG2319 FOG: WD40 repeat [Gene 94.2 6.5 0.00014 41.9 21.4 142 218-428 178-321 (466)
449 PF02450 LCAT: Lecithin:choles 94.1 0.062 1.3E-06 57.6 5.0 83 554-651 66-160 (389)
450 KOG3621 WD40 repeat-containing 94.1 3.1 6.7E-05 46.1 17.4 121 28-170 14-142 (726)
451 PRK13613 lipoprotein LpqB; Pro 94.0 4.1 8.9E-05 46.0 19.1 105 46-174 367-476 (599)
452 KOG4283 Transcription-coupled 93.9 7.1 0.00015 38.5 22.2 111 216-362 166-281 (397)
453 TIGR02604 Piru_Ver_Nterm putat 93.9 2.8 6E-05 44.7 17.0 73 241-336 125-202 (367)
454 KOG1551 Uncharacterized conser 93.7 0.24 5.2E-06 47.7 7.3 29 615-643 194-222 (371)
455 KOG0308 Conserved WD40 repeat- 93.5 0.53 1.2E-05 51.0 10.2 155 156-358 77-244 (735)
456 PRK13614 lipoprotein LpqB; Pro 93.4 9.1 0.0002 42.9 20.2 89 318-429 435-526 (573)
457 KOG2111 Uncharacterized conser 93.4 9.3 0.0002 38.3 22.4 86 216-338 157-248 (346)
458 PF11288 DUF3089: Protein of u 93.4 0.14 3E-06 48.6 5.2 85 566-651 45-137 (207)
459 TIGR02604 Piru_Ver_Nterm putat 93.3 6.7 0.00015 41.8 18.8 60 391-452 126-202 (367)
460 PF01764 Lipase_3: Lipase (cla 93.3 0.19 4.1E-06 45.2 5.9 53 597-651 47-106 (140)
461 KOG2521 Uncharacterized conser 93.3 2.5 5.4E-05 43.8 14.4 66 704-769 225-290 (350)
462 KOG0321 WD40 repeat-containing 93.0 2.8 6.1E-05 45.7 14.6 38 216-253 120-158 (720)
463 KOG0274 Cdc4 and related F-box 92.9 14 0.00029 41.5 20.6 92 216-359 309-402 (537)
464 KOG0276 Vesicle coat complex C 92.9 5.4 0.00012 43.5 16.4 238 100-416 15-254 (794)
465 PF11768 DUF3312: Protein of u 92.7 15 0.00033 40.1 19.8 95 218-360 236-332 (545)
466 KOG0276 Vesicle coat complex C 92.7 18 0.0004 39.7 23.6 169 69-266 74-249 (794)
467 cd00741 Lipase Lipase. Lipase 92.7 0.26 5.7E-06 45.1 6.1 39 598-638 12-50 (153)
468 KOG0308 Conserved WD40 repeat- 92.6 1.1 2.3E-05 48.9 10.8 161 191-420 68-244 (735)
469 KOG3914 WD repeat protein WDR4 92.6 2.8 6.1E-05 43.1 13.3 94 219-361 133-227 (390)
470 PRK13615 lipoprotein LpqB; Pro 92.6 9.7 0.00021 42.6 18.8 100 46-174 338-438 (557)
471 PLN02606 palmitoyl-protein thi 92.5 1.2 2.7E-05 44.8 10.7 102 536-649 26-130 (306)
472 KOG4547 WD40 repeat-containing 92.4 6.3 0.00014 42.7 16.2 100 214-362 76-177 (541)
473 PRK13614 lipoprotein LpqB; Pro 92.3 7.1 0.00015 43.7 17.4 56 100-170 344-399 (573)
474 KOG4532 WD40-like repeat conta 92.3 12 0.00026 36.6 16.7 84 314-422 248-332 (344)
475 KOG1034 Transcriptional repres 92.2 0.99 2.2E-05 45.0 9.3 144 216-419 64-211 (385)
476 PF07519 Tannase: Tannase and 92.0 0.27 5.9E-06 54.0 6.0 65 704-768 353-426 (474)
477 PRK13615 lipoprotein LpqB; Pro 91.9 8.7 0.00019 42.9 17.4 160 102-360 337-505 (557)
478 KOG0270 WD40 repeat-containing 91.8 6.4 0.00014 41.1 14.9 161 202-426 249-411 (463)
479 PRK13613 lipoprotein LpqB; Pro 91.6 9.2 0.0002 43.3 17.5 86 318-425 456-543 (599)
480 KOG0300 WD40 repeat-containing 91.6 5.8 0.00013 39.4 13.6 93 218-358 294-387 (481)
481 PF11768 DUF3312: Protein of u 91.6 4.6 9.9E-05 44.0 14.2 153 216-428 182-338 (545)
482 smart00824 PKS_TE Thioesterase 91.6 0.9 2E-05 43.7 8.8 83 554-649 14-100 (212)
483 COG2939 Carboxypeptidase C (ca 91.5 0.36 7.7E-06 51.6 5.9 111 521-635 87-217 (498)
484 PF13360 PQQ_2: PQQ-like domai 91.5 2.4 5.2E-05 41.9 11.9 141 218-426 3-145 (238)
485 KOG2100 Dipeptidyl aminopeptid 91.2 16 0.00035 42.9 19.6 74 394-467 345-423 (755)
486 PF03283 PAE: Pectinacetyleste 91.2 0.14 3.1E-06 53.8 2.7 39 597-635 137-175 (361)
487 PLN02517 phosphatidylcholine-s 91.1 0.37 8E-06 52.8 5.7 75 554-635 157-232 (642)
488 KOG1034 Transcriptional repres 90.8 6.8 0.00015 39.3 13.4 98 216-360 113-214 (385)
489 PF03088 Str_synth: Strictosid 90.8 0.93 2E-05 36.6 6.4 68 396-466 5-87 (89)
490 COG2319 FOG: WD40 repeat [Gene 90.8 25 0.00054 37.3 23.7 165 218-449 134-301 (466)
491 PF13449 Phytase-like: Esteras 90.6 24 0.00052 36.9 22.3 146 102-288 88-251 (326)
492 PLN02454 triacylglycerol lipas 90.5 0.76 1.6E-05 48.5 7.1 55 597-651 209-271 (414)
493 KOG1520 Predicted alkaloid syn 90.2 7.5 0.00016 40.3 13.7 126 201-359 119-251 (376)
494 PLN02633 palmitoyl protein thi 89.9 2.9 6.2E-05 42.3 10.3 103 535-649 24-129 (314)
495 cd00519 Lipase_3 Lipase (class 89.9 0.57 1.2E-05 46.2 5.6 52 598-651 112-168 (229)
496 PF03022 MRJP: Major royal jel 89.9 13 0.00027 38.1 15.4 58 393-453 190-255 (287)
497 KOG0646 WD40 repeat protein [G 89.5 3.8 8.2E-05 43.0 11.0 85 216-338 59-145 (476)
498 KOG0281 Beta-TrCP (transducin 89.5 0.87 1.9E-05 45.5 6.2 150 210-433 249-400 (499)
499 TIGR03606 non_repeat_PQQ dehyd 89.5 35 0.00075 37.2 18.9 26 438-464 235-260 (454)
500 PF02089 Palm_thioest: Palmito 89.4 0.86 1.9E-05 45.5 6.3 107 534-649 3-114 (279)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-48 Score=435.63 Aligned_cols=608 Identities=22% Similarity=0.306 Sum_probs=423.7
Q ss_pred HhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCe
Q 004141 33 DFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK 112 (771)
Q Consensus 33 ~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~ 112 (771)
.+..+..+....+ +++|..++|..+..+.........+|+.+... ...++.. ..+..+.|||||+.
T Consensus 8 ~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~------~~~~~~~~spdg~~ 73 (620)
T COG1506 8 DLLALARVSDPRV----SPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFG------GGVSELRWSPDGSV 73 (620)
T ss_pred HHHhhhcccCccc----CCCCceeEEeeccccccccccccceEEEeccc----ccccccC------CcccccccCCCCCE
Confidence 4445555554444 45789999998887777778888899854321 1222222 56888999999999
Q ss_pred EEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCC
Q 004141 113 LLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSD 192 (771)
Q Consensus 113 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~ 192 (771)
++|.++..+...++|++..++ .+......+ ....|||+|+.+++.......+.. +.
T Consensus 74 ~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v----------~~~~~~~~g~~~~~~~~~~~~~~~---------~~-- 129 (620)
T COG1506 74 LAFVSTDGGRVAQLYLVDVGG---LITKTAFGV----------SDARWSPDGDRIAFLTAEGASKRD---------GG-- 129 (620)
T ss_pred EEEEeccCCCcceEEEEecCC---ceeeeeccc----------ccceeCCCCCeEEEEecccccccC---------Cc--
Confidence 999985554567888887434 222223333 488899999999994332211100 00
Q ss_pred ccCCCCCC-cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004141 193 KDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 193 ~~~~~~~~-~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
+...... .+.+..+ | ....+++++|..+ ....+ ......+..+.|.+|++. ++.........
T Consensus 130 -~~~~~~~~~~~~~~~-g-----~~~~~l~~~d~~~-~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--- 192 (620)
T COG1506 130 -DHLFVDRLPVWFDGR-G-----GERSDLYVVDIES-KLIKL--GLGNLDVVSFATDGDGRL----VASIRLDDDAD--- 192 (620)
T ss_pred -eeeeecccceeecCC-C-----CcccceEEEccCc-ccccc--cCCCCceeeeeeCCCCce----eEEeeeccccC---
Confidence 0000000 1111111 1 2468999999887 44444 455556666777777775 55555332200
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccc
Q 004141 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 351 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l 351 (771)
..-...+.... .++....++.....+..+.|.+||+.+++....... .......+
T Consensus 193 -----~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~---~~~~~~~~ 247 (620)
T COG1506 193 -----PWVTNLYVLIE-----------------GNGELESLTPGEGSISKLAFDADGKSIALLGTESDR---GLAEGDFI 247 (620)
T ss_pred -----CceEeeEEEec-----------------CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCcc---CccccceE
Confidence 00112333332 467788888888889999999999999999887631 11234556
Q ss_pred eeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCcEEEecC
Q 004141 352 HRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 352 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~d~~tg~~~~l~~ 430 (771)
++++...+..... ..... . .. ......+.-++..++|.... .+...++.++...+....+..
T Consensus 248 ~~~~~~~~~~d~~-------~~~~~----~-~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~ 310 (620)
T COG1506 248 LLLDGELGEVDGD-------LSSGD----D-TR-----GAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSG 310 (620)
T ss_pred EEEecccccccee-------eccCC----c-cc-----CcHHhccccCCCcEEEEEecCCCceEEEEEeccCCceeeecC
Confidence 6666222222110 00000 0 00 01111122355556666665 666777777754554444444
Q ss_pred CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcc-eeeeecccCc
Q 004141 431 AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQF-SIMKIPVKGV 509 (771)
Q Consensus 431 ~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 509 (771)
... ....|+.+++.+++..++++.|+++|+.+.. .. ..+ +.. .+ ..+....+ ..+
T Consensus 311 ~~~--~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~~-~~--~~~--~~~------~~----~~~~~~~~~~~e------- 366 (620)
T COG1506 311 DDG--GVPGFDVDGRKLALAYSSPTEPPEIYLYDRG-EE--AKL--TSS------NN----SGLKKVKLAEPE------- 366 (620)
T ss_pred CCc--eEEEEeeCCCEEEEEecCCCCccceEEEcCC-Cc--eEE--eec------cc----ccccccccCCce-------
Confidence 433 4567777999999999999999999998751 11 111 000 00 00111111 111
Q ss_pred ccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004141 510 SANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 510 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
.+.+...+|.++++|++.|.++++.+++|+||++||||.......+...++.|+.+||+|+.+||||+.|||.+|.+...
T Consensus 367 ~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~ 446 (620)
T COG1506 367 PVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIR 446 (620)
T ss_pred EEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhh
Confidence 12456668999999999999988888899999999999887777888899999999999999999999999999999999
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
++++..+.+|+.++++++.+.+.+|++|++|+|+|+||+++++++.+.| .|+++++..+.+++..+....+...+....
T Consensus 447 ~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (620)
T COG1506 447 GDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPE 525 (620)
T ss_pred hccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHH
Confidence 9999999999999999999999999999999999999999999999876 899999999988887776665554333222
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
.... .+.+ +.+.+...||+.+++++++|+|||||+.|.+||++|+++|+++|+.+|+++++++||+++|++
T Consensus 526 ~~~~--------~~~~-~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~ 596 (620)
T COG1506 526 ENGG--------GPPE-DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGF 596 (620)
T ss_pred HhCC--------Cccc-ChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCC
Confidence 2211 1112 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhhC
Q 004141 750 ERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
..+++....+.++++||+++|+
T Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~ 618 (620)
T COG1506 597 SRPENRVKVLKEILDWFKRHLK 618 (620)
T ss_pred CCchhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999985
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=5.7e-42 Score=386.87 Aligned_cols=527 Identities=14% Similarity=0.124 Sum_probs=359.4
Q ss_pred ceEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.....|||||++|||..+..+ +..++++++ .+|... ...+.... ..++|++||+.|+|.......
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~~~----------~~~~w~~D~~~~~y~~~~~~~-- 195 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDNVE----------PSFVWANDSWTFYYVRKHPVT-- 195 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccCcc----------eEEEEeeCCCEEEEEEecCCC--
Confidence 456789999999999977653 344566776 444310 11111111 368999999999998764210
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC--ceeeccCCCC-CCccceEEEec-CCCCC
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPK-SLSVGQVVWAP-LNEGL 254 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--~~~~l~~~~~-~~~~~~~~wsp-Dg~~~ 254 (771)
....+||++++.++ +.+.+ ... +....-..|.+ |++.
T Consensus 196 ------------------------------------~~~~~v~~h~lgt~~~~d~lv--~~e~~~~~~~~~~~s~d~~~- 236 (686)
T PRK10115 196 ------------------------------------LLPYQVWRHTIGTPASQDELV--YEEKDDTFYVSLHKTTSKHY- 236 (686)
T ss_pred ------------------------------------CCCCEEEEEECCCChhHCeEE--EeeCCCCEEEEEEEcCCCCE-
Confidence 02368999999988 44445 221 11122234545 8887
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC-ccccceeecCCCCEEEE
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~-~~~~~p~~SpDG~~l~f 333 (771)
++..+.. +..+.+++++.+. ..++.+.+.... .....+ ...+..+++
T Consensus 237 ---l~i~~~~------------~~~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~--~~~~~~ly~ 284 (686)
T PRK10115 237 ---VVIHLAS------------ATTSEVLLLDAEL---------------ADAEPFVFLPRRKDHEYSL--DHYQHRFYL 284 (686)
T ss_pred ---EEEEEEC------------CccccEEEEECcC---------------CCCCceEEEECCCCCEEEE--EeCCCEEEE
Confidence 7654422 2234677777421 233333333222 222222 234567777
Q ss_pred EecCCCCCCCCccccccceeeecCC-CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~ 412 (771)
.++.+ ....+|..+++.. ++.+.+.... ++ ..+..+.++ ++.|+++...++.
T Consensus 285 ~tn~~-------~~~~~l~~~~~~~~~~~~~l~~~~-----------~~-------~~i~~~~~~--~~~l~~~~~~~g~ 337 (686)
T PRK10115 285 RSNRH-------GKNFGLYRTRVRDEQQWEELIPPR-----------EN-------IMLEGFTLF--TDWLVVEERQRGL 337 (686)
T ss_pred EEcCC-------CCCceEEEecCCCcccCeEEECCC-----------CC-------CEEEEEEEE--CCEEEEEEEeCCE
Confidence 77664 2346688888763 2211111110 00 012334555 5589999989999
Q ss_pred eEEEEEECCCCcEEEecC-CCCCceeeEEe--ecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCC-CCCCch
Q 004141 413 QVIISVNVSSGELLRITP-AESNFSWSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSP-ISRCPE 488 (771)
Q Consensus 413 ~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s--~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 488 (771)
..|+.+++.++++..|.. .........++ ++++.+++..+++++|+++|.+++.+++ ++.++.+ ...
T Consensus 338 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~------~~~l~~~~~~~--- 408 (686)
T PRK10115 338 TSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE------RRVLKQTEVPG--- 408 (686)
T ss_pred EEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc------EEEEEecCCCC---
Confidence 999999988778887763 22222222333 5677899999999999999999976542 1112111 111
Q ss_pred hhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcE
Q 004141 489 KVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS 568 (771)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~ 568 (771)
+....+....+ .+.+.||.+|+++++.+++....++.|+||++|||++......|....+.|+++||+
T Consensus 409 -----~~~~~~~~e~v-------~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~ 476 (686)
T PRK10115 409 -----FDAANYRSEHL-------WITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFV 476 (686)
T ss_pred -----cCccccEEEEE-------EEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcE
Confidence 11112233333 456778999999766655433456779999999999988888898888999999999
Q ss_pred EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecC
Q 004141 569 LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 648 (771)
Q Consensus 569 Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 648 (771)
|+.+|+||++++|+.|.+......+..+++|+++++++|++++.+|++|++++|.|+||+++.+++.++|++|+|+|+..
T Consensus 477 v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~v 556 (686)
T PRK10115 477 YAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQV 556 (686)
T ss_pred EEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecC
Confidence 99999999999999999877767777889999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhcCCCCC-cchhhhhccCCCCccCCCCCC-hhhHHHHhhcCcccccCCCCCc-EEEEeeCCCCccCcHHHHH
Q 004141 649 PLCNLALMVGTTDIP-DWCYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQ 725 (771)
Q Consensus 649 p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P-~lii~G~~D~~vp~~~~~~ 725 (771)
|++|+..++...+++ .+...+.+|. |. .+..+.+...||+.++.+++.| +||+||.+|.+||+.++.+
T Consensus 557 p~~D~~~~~~~~~~p~~~~~~~e~G~---------p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k 627 (686)
T PRK10115 557 PFVDVVTTMLDESIPLTTGEFEEWGN---------PQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAK 627 (686)
T ss_pred CchhHhhhcccCCCCCChhHHHHhCC---------CCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHH
Confidence 999998765443333 2333344443 33 3445566789999999999999 6778999999999999999
Q ss_pred HHHHHHhCCCCEEEEEe---CCCCccCCCCCChHHHHHH---HHHHHHHhh
Q 004141 726 YARALREKGVETKVIVF---PNDVHGIERPQSDFESFLN---IGLWFKKYC 770 (771)
Q Consensus 726 ~~~~l~~~g~~~~~~~~---~~~~H~~~~~~~~~~~~~~---i~~fl~~~L 770 (771)
++.+|++.+++++++++ +++||+. ..++...+++ ...|+-..+
T Consensus 628 ~~a~Lr~~~~~~~~vl~~~~~~~GHg~--~~~r~~~~~~~A~~~aFl~~~~ 676 (686)
T PRK10115 628 WVAKLRELKTDDHLLLLCTDMDSGHGG--KSGRFKSYEGVAMEYAFLIALA 676 (686)
T ss_pred HHHHHHhcCCCCceEEEEecCCCCCCC--CcCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888888 9999983 3333344443 466665544
No 3
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-34 Score=324.07 Aligned_cols=613 Identities=18% Similarity=0.231 Sum_probs=384.3
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004141 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..++|.+.+.+..+....-+.......+++++.... +.. +...+........|||.|.+++|+.+++ ++
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~wsp~~~~l~yv~~~n-----iy 171 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGE-KLH-----PPEYEGSKIQYASWSPLGNDLAYVLHNN-----IY 171 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCC-ccc-----CcccCCCeeEEEEEcCCCCEEEEEEecc-----cc
Confidence 345677777776654333344444555555554443 011 1111123357899999999999998764 22
Q ss_pred EEe-cCCcceEEEec------CCcccccccCCCcc---cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCC
Q 004141 128 ELW-SQSQLEKEFHV------PQTVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 197 (771)
Q Consensus 128 ~~~-~~~~~~~~~~~------~~~~~g~~~~~~~~---~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (771)
.-. ......+++.- -.+..+++|.++.+ ....|||||..++|................... ......
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~-~~yp~~-- 248 (755)
T KOG2100|consen 172 YQSSEEDEDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFNDTKVETINLPGYTDD-DQYPKS-- 248 (755)
T ss_pred cccCcCCCceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEecccccceEEecccccc-ccCccc--
Confidence 111 11111222211 12334455554433 366799999999998765543210000000000 000000
Q ss_pred CCCcccccCCcCcccCCccCceEEEEEccCCceeecc----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeee
Q 004141 198 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 273 (771)
Q Consensus 198 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~ 273 (771)
..+.|... |. ......|+++|........+. .......+....|.-+.+ +.++-
T Consensus 249 --~~~~ypk~-g~---~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-----~~~~~----------- 306 (755)
T KOG2100|consen 249 --TNFHYPKA-GA---PNPAVSLFVVDLHDPPRLGIPPPTNQRSGEYYVTNVKWDTTEK-----VLVVW----------- 306 (755)
T ss_pred --ceeecCCC-CC---CCCeEEEEEEeCCCceeeccCCccccccCceEEEEEEEecCcc-----EEEEE-----------
Confidence 00111111 11 123457888885544333311 011123455667877754 44332
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcc----eecCCC---CccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004141 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV----VNLTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~lt~~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
.+|.+.+-...+.. ..+.+ +....+ ......|.++.|+....+...... +
T Consensus 307 --~~r~~~~~~~~~cd---------------~~~~~~~~~~~~~~~~W~~~~~~~~~~~~d~~~~~~~~~~~~---~--- 363 (755)
T KOG2100|consen 307 --TNREQNISVETLCD---------------TPGICRVVYEESSDGGWVEHQNVEPVFSSDGSSYLKVDSVSD---G--- 363 (755)
T ss_pred --EccCCCeeeeEEec---------------CcccceeeEeccccccccccccccceEeecCCceeEEEeecc---C---
Confidence 12222222222210 00100 001111 011135889999865555544431 2
Q ss_pred ccccceeeecCCC-CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee--CCeeEEEEEECCCC
Q 004141 347 ATDSLHRIDWPTN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSG 423 (771)
Q Consensus 347 ~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~--~~~~~l~~~d~~tg 423 (771)
.-.++..+....+ ..+.++.+.+.+..+ +.|..|+++++|.+.. .+..+||.+++.++
T Consensus 364 ~~~hi~~~~~~~~~~~~~lt~g~w~v~~i-------------------~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~ 424 (755)
T KOG2100|consen 364 GYNHIAYLKLSNGSEPRMLTSGNWEVTSI-------------------LGYDKDSNRIYFDAYEEDPSERHLYSISLGSG 424 (755)
T ss_pred CEEEEEEEEcCCCCccccccccceEEEEe-------------------ccccCCCceEEEEecCCCCCceEEEEEEcccc
Confidence 1355666666555 555666666654422 2455788899998886 46778999999988
Q ss_pred cEEEecCCCC----CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcc
Q 004141 424 ELLRITPAES----NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQF 499 (771)
Q Consensus 424 ~~~~l~~~~~----~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 499 (771)
.+..++.... ......++...+.+++.++.|..|.. .+-...... .. .|..| +.+..+...+....+
T Consensus 425 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~-~~~~~~~~~-~~--~~~~L-----e~n~~~~~~~~~~~~ 495 (755)
T KOG2100|consen 425 TVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDG-QLTRHSSKN-SK--TIVVL-----ETNEELKKTIENVAL 495 (755)
T ss_pred ccccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcc-eeecccccc-ce--EEEEe-----ccChhhHHHhhcccC
Confidence 8887775543 23334566678889999999999875 222222221 11 12222 234444444432221
Q ss_pred eeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC---cchHHHHHHHHCCcEEEEECCCC
Q 004141 500 SIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRG 576 (771)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~---~~~~~~~~la~~G~~Vv~~d~rG 576 (771)
|..+. ....-+|....+.++.|+++++.+++|++|.+||||.+.... ........+...|++|+.+|+||
T Consensus 496 -----p~~~~--~~i~~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RG 568 (755)
T KOG2100|consen 496 -----PIVEF--GKIEIDGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRG 568 (755)
T ss_pred -----Cccee--EEEEeccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCC
Confidence 21111 112227888999999999999999999999999999743221 12223445678999999999999
Q ss_pred CCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC-CceeEEEecCCccchhh
Q 004141 577 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP-DKFVAAAARNPLCNLAL 655 (771)
Q Consensus 577 ~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p-~~~~~~v~~~p~~~~~~ 655 (771)
++++|..++..+++++|..+++|+..+++++++.+.+|.+||+|+|+|+||+++++++...+ +.|+|+++.+|+.++.
T Consensus 569 s~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~- 647 (755)
T KOG2100|consen 569 SGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL- 647 (755)
T ss_pred cCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-
Confidence 99999999999999999999999999999999999999999999999999999999999987 7889999999999987
Q ss_pred hhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcE-EEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004141 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT-IFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~-lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
+....... ++++.+. ++...|.+.++...+..++.|. |++||+.|..|+.+++.+++++|+.+|
T Consensus 648 ~yds~~te--------------rymg~p~-~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~g 712 (755)
T KOG2100|consen 648 YYDSTYTE--------------RYMGLPS-ENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAG 712 (755)
T ss_pred eecccccH--------------hhcCCCc-cccchhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCC
Confidence 43333222 2233333 2223388889999999998775 999999999999999999999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+++++++||++.|++.........+..+..||...+
T Consensus 713 v~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 713 VPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred CceEEEEeCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 999999999999999988877789999999998543
No 4
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-31 Score=275.26 Aligned_cols=339 Identities=19% Similarity=0.268 Sum_probs=259.6
Q ss_pred CEEEEEeeeCC--eeEEEEEECC-CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeee
Q 004141 401 CTMLLSSIWGS--SQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWL 477 (771)
Q Consensus 401 ~~l~~~~~~~~--~~~l~~~d~~-tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~ 477 (771)
+.+||....+. ..+||.+... .|++.+++.....+. ..++.+=+.++...++...|+++.++++..+++.
T Consensus 516 ~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~-~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~------ 588 (867)
T KOG2281|consen 516 KLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHS-CELDQQCDHFVSYYSSVGSPPCVSLYSLSWPEND------ 588 (867)
T ss_pred eEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccc-hhhhhhhhhHhhhhhcCCCCceEEEEeccCCccC------
Confidence 34556655444 3479999887 899999998765333 3466666677788899999999999998765411
Q ss_pred ccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cch
Q 004141 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYS 556 (771)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~ 556 (771)
++.....-..-+++.......-.|.+ -+.+....|..+.|.+|+|.++++.+++|+|++++|||...... .|.
T Consensus 589 ----~l~~q~~~~~~l~~~~~~~Pdy~p~e--if~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfk 662 (867)
T KOG2281|consen 589 ----PLPKQVSFWAILVSGAPPPPDYVPPE--IFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFK 662 (867)
T ss_pred ----cccchhhHHHHHHhcCCCCCccCChh--heeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeecccc
Confidence 11100000111112211111111211 12345567899999999999999999999999999999754322 222
Q ss_pred ----HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC-CCCCCeEEEEEcChhHHHHH
Q 004141 557 ----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTT 631 (771)
Q Consensus 557 ----~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-~~d~~ri~l~G~S~GG~~a~ 631 (771)
..+..|+++||.|+.+|-||+.-.|-.|...+..+.|..+++|...++++|.++. .+|.+||+|-|+|+||++++
T Consensus 663 gi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSl 742 (867)
T KOG2281|consen 663 GIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSL 742 (867)
T ss_pred ceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHH
Confidence 2355789999999999999999889999888899999999999999999999985 79999999999999999999
Q ss_pred HHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCC---CcEE
Q 004141 632 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK---TPTI 708 (771)
Q Consensus 632 ~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~---~P~l 708 (771)
+.+.++|+.|+++|+.+|+.++..+ ......+|++.|. .+...|...|-..++.++. -.+|
T Consensus 743 m~L~~~P~IfrvAIAGapVT~W~~Y---------------DTgYTERYMg~P~-~nE~gY~agSV~~~VeklpdepnRLl 806 (867)
T KOG2281|consen 743 MGLAQYPNIFRVAIAGAPVTDWRLY---------------DTGYTERYMGYPD-NNEHGYGAGSVAGHVEKLPDEPNRLL 806 (867)
T ss_pred HHhhcCcceeeEEeccCcceeeeee---------------cccchhhhcCCCc-cchhcccchhHHHHHhhCCCCCceEE
Confidence 9999999999999999999875433 2223456666664 3445666667777776664 4599
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++||--|++|...+.-.+..+|.++|++.++++||++.|++..++.....-.+++.|+.+
T Consensus 807 LvHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 807 LVHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred EEecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999887777889999876
No 5
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.97 E-value=1.5e-28 Score=264.62 Aligned_cols=288 Identities=16% Similarity=0.203 Sum_probs=216.5
Q ss_pred HHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEE
Q 004141 26 SLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVV 105 (771)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~ 105 (771)
-+..+|+.++..|.+. +++|+|+....+...+...+.||+++. +++++++||... .....|+
T Consensus 130 ~~D~~~~~~tg~~g~~-----------~~~iayv~~~~~~~~~~~~~~l~~~d~--dG~~~~~lt~~~-----~~~~sP~ 191 (428)
T PRK01029 130 AADTIHYALTGVPGIS-----------SGKIIFSLSTTNSDTELKQGELWSVDY--DGQNLRPLTQEH-----SLSITPT 191 (428)
T ss_pred HHHHHHHHHcCCCccc-----------cCEEEEEEeeCCcccccccceEEEEcC--CCCCceEcccCC-----CCcccce
Confidence 3445667887877776 468899988777666666789999775 556788888765 4567899
Q ss_pred eCCCCCe--EEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCcc
Q 004141 106 PSPSGSK--LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182 (771)
Q Consensus 106 ~SPdG~~--la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 182 (771)
|||||++ ++|++.+. +..++|+++ .+++.++++...... ..++|||||++|||++...
T Consensus 192 wSPDG~~~~~~y~S~~~-g~~~I~~~~l~~g~~~~lt~~~g~~----------~~p~wSPDG~~Laf~s~~~-------- 252 (428)
T PRK01029 192 WMHIGSGFPYLYVSYKL-GVPKIFLGSLENPAGKKILALQGNQ----------LMPTFSPRKKLLAFISDRY-------- 252 (428)
T ss_pred EccCCCceEEEEEEccC-CCceEEEEECCCCCceEeecCCCCc----------cceEECCCCCEEEEEECCC--------
Confidence 9999998 55688766 678999999 778888888865544 4799999999999987532
Q ss_pred CCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEE--EEccC---CceeeccCCCCC-CccceEEEecCCCCCcc
Q 004141 183 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV--ININS---GEVQAVKGIPKS-LSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v--~d~~~---~~~~~l~~~~~~-~~~~~~~wspDg~~~~~ 256 (771)
+..++|+ +++.+ ++.+++ +... .....+.|||||+.
T Consensus 253 ---------------------------------g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~--- 294 (428)
T PRK01029 253 ---------------------------------GNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR--- 294 (428)
T ss_pred ---------------------------------CCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE---
Confidence 2235555 45554 466777 4433 24468999999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+|+++..+ ..+||+++++. .+++.++|+........|.|||||++|+|.+.
T Consensus 295 -Laf~s~~~g------------~~~ly~~~~~~---------------~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 295 -LVFVSNKDG------------RPRIYIMQIDP---------------EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred -EEEEECCCC------------CceEEEEECcc---------------cccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence 999985322 23799998731 23557888877667789999999999999987
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
.. | ..+|+++|+.+++.++++.... ....+.|+|||+.|+|.+...+...||
T Consensus 347 ~~----g----~~~I~v~dl~~g~~~~Lt~~~~--------------------~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 347 IK----G----VRQICVYDLATGRDYQLTTSPE--------------------NKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred CC----C----CcEEEEEECCCCCeEEccCCCC--------------------CccceEECCCCCEEEEEECCCCCceEE
Confidence 64 2 4689999999988766653310 234678999999999988877778999
Q ss_pred EEECCCCcEEEecCCCCCceeeEEeecC
Q 004141 417 SVNVSSGELLRITPAESNFSWSLLTLDG 444 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~s~dg 444 (771)
.+|+++++.++|+...+....+.|+|-.
T Consensus 399 ~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCCEEEeecCCCcccCceecCCC
Confidence 9999999999998766655667887643
No 6
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.97 E-value=5.8e-30 Score=251.83 Aligned_cols=206 Identities=34% Similarity=0.583 Sum_probs=174.5
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHH
Q 004141 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 633 (771)
Q Consensus 554 ~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~ 633 (771)
.|+...++|+++||+|+.+||||++++|..+.......++..+++|+.++++++++++.+|++||+|+|+|+||++++.+
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 35677889999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred HhhCCCceeEEEecCCccchhhhhcCCCCCcchh--hhhccCCCCccCCCCCChhhHHHHhhcCcccccCC--CCCcEEE
Q 004141 634 IGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK--VKTPTIF 709 (771)
Q Consensus 634 a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--i~~P~li 709 (771)
+.++|++|+++|+.+|+.++..+....+. +.. ...++. .......+...+|+..+.+ +++|+||
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~~~~~~~~P~li 149 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGTTDI--YTKAEYLEYGD----------PWDNPEFYRELSPISPADNVQIKPPVLI 149 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHHTCC--HHHGHHHHHSS----------TTTSHHHHHHHHHGGGGGGCGGGSEEEE
T ss_pred hcccceeeeeeeccceecchhcccccccc--cccccccccCc----------cchhhhhhhhhccccccccccCCCCEEE
Confidence 99999999999999999987766544333 111 011111 1234566777788888888 8899999
Q ss_pred EeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 710 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 710 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+||++|.+||++++.+++++|++.|++++++++|+++|.+..++...+++.++++||+++|+
T Consensus 150 ~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 150 IHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp EEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred EccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998888888999999999999986
No 7
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.96 E-value=2.2e-26 Score=237.58 Aligned_cols=345 Identities=17% Similarity=0.218 Sum_probs=264.4
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCC
Q 004141 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKAN 470 (771)
Q Consensus 392 ~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~ 470 (771)
..+.+.+| +|+...-.+...++...+...-..+.|.... +.......+.+|+.+++..++.+.|+++|+.++.+.+
T Consensus 300 e~v~tt~~--~~va~~l~nv~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e- 376 (648)
T COG1505 300 EQVVTTKD--KLVAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGE- 376 (648)
T ss_pred eeeEEEcC--eEEeeeehhccceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCce-
Confidence 34555555 3555444444445666666554444454332 2222223445889999999999999999999987654
Q ss_pred CceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC
Q 004141 471 KGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV 550 (771)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~ 550 (771)
.. .|-++..++ ....+++.+. ..++.||.+|+++++. ++.+.+ +.|++|+-+||....
T Consensus 377 Le-----~ik~~p~~F--------Da~~~~veQ~-------~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vs 434 (648)
T COG1505 377 LE-----VIREQPVQF--------DADNYEVEQF-------FATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNIS 434 (648)
T ss_pred eh-----hhhhccCCc--------CccCceEEEE-------EEEcCCCccccEEEEe-cCCcCC-CCceEEEeccccccc
Confidence 11 111111111 1223333332 4567789999999998 765555 889999999999988
Q ss_pred CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHH
Q 004141 551 SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLT 630 (771)
Q Consensus 551 ~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a 630 (771)
..+.|......+.++|.+.++.|.||.++||..|++.......++.++|+.++++.|++++...|+++++.|.|.||.++
T Consensus 435 ltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLv 514 (648)
T COG1505 435 LTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLV 514 (648)
T ss_pred cCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEE
Confidence 88899988888899999999999999999999999888777777789999999999999999999999999999999999
Q ss_pred HHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCC--CcEE
Q 004141 631 THLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTI 708 (771)
Q Consensus 631 ~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~l 708 (771)
..++.++|++|.|+|+..|++||..+.....-..|. ..|| ....+++...+.++||+++++.-+ +|+|
T Consensus 515 g~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~--~EYG--------~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~L 584 (648)
T COG1505 515 GAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWI--AEYG--------NPDDPEDRAFLLAYSPYHNLKPGQKYPPTL 584 (648)
T ss_pred EeeeccChhhhCceeeccchhhhhhhcccccchhhH--hhcC--------CCCCHHHHHHHHhcCchhcCCccccCCCeE
Confidence 999999999999999999999998776554433342 3333 344578888899999999887633 7899
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh-HHHHHHHHHHHHHhhC
Q 004141 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD-FESFLNIGLWFKKYCK 771 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~-~~~~~~i~~fl~~~L~ 771 (771)
|..+.+|.+|.|.|++.|+.+|++.+.++-+.+--++||+-..+... ......+..||.+.|.
T Consensus 585 ITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 585 ITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred EEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999888888999987766554 4455678889998874
No 8
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.96 E-value=9.7e-27 Score=251.96 Aligned_cols=281 Identities=16% Similarity=0.216 Sum_probs=211.6
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+..+|+.|+..+..-. ++|+|+....+ +.+.+.||+++. ++.+.+++|... .....|
T Consensus 146 ~~~d~i~~~ltg~~g~f~-----------~riayv~~~~~---~~~~~~l~~~d~--dg~~~~~lt~~~-----~~~~~p 204 (429)
T PRK03629 146 TASDEVFEKLTGIKGAFR-----------TRIAYVVQTNG---GQFPYELRVSDY--DGYNQFVVHRSP-----QPLMSP 204 (429)
T ss_pred HHHHHHHHHhcCCCCccC-----------CeEEEEEeeCC---CCcceeEEEEcC--CCCCCEEeecCC-----Cceeee
Confidence 345567888887776653 56788876543 345789999876 444667787665 457899
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++... +..+++.++ .+++.++++...... ..+.|||||++|+|+....
T Consensus 205 ~wSPDG~~la~~s~~~-g~~~i~i~dl~~G~~~~l~~~~~~~----------~~~~~SPDG~~La~~~~~~--------- 264 (429)
T PRK03629 205 AWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT--------- 264 (429)
T ss_pred EEcCCCCEEEEEEecC-CCcEEEEEECCCCCeEEccCCCCCc----------CCeEECCCCCEEEEEEcCC---------
Confidence 9999999999998654 567788877 666666666554333 4789999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.
T Consensus 265 --------------------------------g~~~I~~~d~~tg~~~~l--t~~~~~~~~~~wSPDG~~----I~f~s~ 306 (429)
T PRK03629 265 --------------------------------GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAYTSD 306 (429)
T ss_pred --------------------------------CCcEEEEEECCCCCEEEc--cCCCCCcCceEECCCCCE----EEEEeC
Confidence 235799999999999999 555556788999999999 999984
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||.+|+ ++++.++|+........|.|||||++|+|.+... |
T Consensus 307 ~~g------------~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~----g 353 (429)
T PRK03629 307 QAG------------RPQVYKVNI-----------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG----G 353 (429)
T ss_pred CCC------------CceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEEccC----C
Confidence 321 238999998 7788888887666667899999999999998764 2
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
..+|+++|+.+++.+.++... ....+.|||||+.|+|.+..++...|+.++++++
T Consensus 354 ----~~~I~~~dl~~g~~~~Lt~~~---------------------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 354 ----QQHIAKQDLATGGVQVLTDTF---------------------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred ----CceEEEEECCCCCeEEeCCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 357999999888765554221 1236789999999999998777778999999877
Q ss_pred cEEEecCCCCCceeeEEee
Q 004141 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..++|+...+....+.|+|
T Consensus 409 ~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CeEECccCCCCcCCcccCC
Confidence 8888876444445566665
No 9
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.95 E-value=2.2e-24 Score=226.12 Aligned_cols=535 Identities=17% Similarity=0.156 Sum_probs=338.9
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEE-e-cCCc-ceEEEecCCcccc-cccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFEL-W-SQSQ-LEKEFHVPQTVHG-SVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~g-~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
....+|.+-.|.+...+...-++.- . .++. .+.+.+......| ..| ..+.++.|||++.+||+-+..
T Consensus 80 vp~~~~~~~Yy~r~~~g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~---~Lg~~~~s~D~~~la~s~D~~------ 150 (682)
T COG1770 80 VPYRKGPYEYYSRTEEGKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHDFF---SLGAASISPDHNLLAYSVDVL------ 150 (682)
T ss_pred CccccCCeeEEEEecCCCcceeEEeccCCCCCceeEeecchhccCcccce---eeeeeeeCCCCceEEEEEecc------
Confidence 3456777777777665443334433 2 3333 3444454322221 111 235889999999999975543
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
+..+-.|.+.|+.+|+..... -.....+++|.+|++. +.|
T Consensus 151 ---------------------------------G~e~y~lr~kdL~tg~~~~d~---i~~~~~~~~Wa~d~~~----lfY 190 (682)
T COG1770 151 ---------------------------------GDEQYTLRFKDLATGEELPDE---ITNTSGSFAWAADGKT----LFY 190 (682)
T ss_pred ---------------------------------cccEEEEEEEecccccccchh---hcccccceEEecCCCe----EEE
Confidence 224568899999999764431 1123668899999999 999
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc--cccceeecCCCCEEEEEecCC
Q 004141 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~--~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+..... .++..||...+... ...-+.+.+... ...++.=|-..++|+...++.
T Consensus 191 t~~d~~----------~rp~kv~~h~~gt~---------------~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~ 245 (682)
T COG1770 191 TRLDEN----------HRPDKVWRHRLGTP---------------GSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSH 245 (682)
T ss_pred EEEcCC----------CCcceEEEEecCCC---------------CCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCC
Confidence 874322 25668888887210 122222222211 122333344455554443221
Q ss_pred CCCCCCccccccceeeecCCCCC--CCCccceeeE-------Ee--cccccCCC-CCcccccCCC---------------
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGN--FSSLEKIVDV-------IP--VVQCAEGD-CFPGLYSSSI--------------- 391 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~--~~~~~~~~~~-------~~--~~~~~~~~-~f~g~~~~~~--------------- 391 (771)
..+++++++.+..+. +.+......+ -+ .+..+.++ .|. +++.-+
T Consensus 246 --------~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~gknf~-l~~ap~~~~~~~w~~~I~h~~ 316 (682)
T COG1770 246 --------ITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNFK-LVRAPVSADKSNWRELIPHRE 316 (682)
T ss_pred --------cceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEecCCCcceE-EEEccCCCChhcCeeeeccCC
Confidence 234455555433322 1111110000 00 00000000 110 111000
Q ss_pred --CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCce-eeEEe--ecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 392 --LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFS-WSLLT--LDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 392 --~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~-~~~~s--~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.--.++--.+.|++.-..++...++..+.++++...|..+...+. +...+ .+.+.|.+..+++++|.+++=+++.
T Consensus 317 ~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~ 396 (682)
T COG1770 317 DVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMA 396 (682)
T ss_pred CceeeeeeeeccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeecc
Confidence 001122223456666667778889999998898888876654221 11222 3678899999999999999999987
Q ss_pred ccCCCceeeeeccCCCCCC-CchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcC
Q 004141 467 DKANKGTWSWLNVSSPISR-CPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHG 545 (771)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HG 545 (771)
+++ ...+ . ..+++. ++ +..+..+.|. ....||..|...++.-++.+-.++.|++++.+|
T Consensus 397 t~e-r~~L-k---qqeV~~g~d--------p~~Y~s~riw-------a~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYG 456 (682)
T COG1770 397 TGE-RTLL-K---QQEVPGGFD--------PEDYVSRRIW-------ATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYG 456 (682)
T ss_pred CCc-EEEE-E---eccCCCCCC--------hhHeEEEEEE-------EEcCCCcEeeEEEEEecccCCCCCCcEEEEEec
Confidence 764 1111 0 111222 32 2233333332 123678888888888777667788999999999
Q ss_pred CCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcCh
Q 004141 546 GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSH 625 (771)
Q Consensus 546 g~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~ 625 (771)
..+......|+...--|..+||+......||.++.|..|.+......-.+.+.|++++.++|++++..++++|+++|.|+
T Consensus 457 aYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSA 536 (682)
T COG1770 457 AYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSA 536 (682)
T ss_pred cccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCc
Confidence 88777777888666678899999999999999999999987766555567799999999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCc-chhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCC
Q 004141 626 GGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD-WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 704 (771)
Q Consensus 626 GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~ 704 (771)
||+++..++.+.|++|+++|+..|++|....+.-..+|- -.....+|. ....+..+.+...||..++..-.
T Consensus 537 GGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGN--------P~d~e~y~yikSYSPYdNV~a~~ 608 (682)
T COG1770 537 GGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGN--------PLDPEYYDYIKSYSPYDNVEAQP 608 (682)
T ss_pred hhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCC--------cCCHHHHHHHhhcCchhccccCC
Confidence 999999999999999999999999999754333222221 011122333 12356677788999999887754
Q ss_pred -CcEEEEeeCCCCccCcHHHHHHHHHHHhCCC---CEEEEEeCCCCccCC
Q 004141 705 -TPTIFLLGAQDLRVPVSNGLQYARALREKGV---ETKVIVFPNDVHGIE 750 (771)
Q Consensus 705 -~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~~~~~H~~~ 750 (771)
+|+|++.|..|++|...+..++..+|+..+. ++-+..--++||+-.
T Consensus 609 YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~ 658 (682)
T COG1770 609 YPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGA 658 (682)
T ss_pred CCceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCC
Confidence 6799999999999999999999999998754 344445467999754
No 10
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.95 E-value=1.4e-25 Score=244.74 Aligned_cols=281 Identities=12% Similarity=0.116 Sum_probs=207.6
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+..+|+.|+..+.+. .++|+|+..... .+...+.||+++. ++.+.+++|... ..+..|
T Consensus 148 ~~~d~i~~~ltg~~g~f-----------~~~iafv~~~~~--~~~~~~~l~~~d~--dg~~~~~lt~~~-----~~v~~p 207 (435)
T PRK05137 148 KIADAIYERLTGEKGYF-----------DTRIVYVAESGP--KNKRIKRLAIMDQ--DGANVRYLTDGS-----SLVLTP 207 (435)
T ss_pred HHHHHHHHHHhCCCCcC-----------CCeEEEEEeeCC--CCCcceEEEEECC--CCCCcEEEecCC-----CCeEee
Confidence 34466888888776543 247788765421 1233678999775 455677787664 458899
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++... +..++|.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 208 ~wSpDG~~lay~s~~~-g~~~i~~~dl~~g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~--------- 267 (435)
T PRK05137 208 RFSPNRQEITYMSYAN-GRPRVYLLDLETGQRELVGNFPGMT----------FAPRFSPDGRKVVMSLSQG--------- 267 (435)
T ss_pred EECCCCCEEEEEEecC-CCCEEEEEECCCCcEEEeecCCCcc----------cCcEECCCCCEEEEEEecC---------
Confidence 9999999999998765 557888888 566666666544332 4889999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||++ |+|++.
T Consensus 268 --------------------------------g~~~Iy~~d~~~~~~~~L--t~~~~~~~~~~~spDG~~----i~f~s~ 309 (435)
T PRK05137 268 --------------------------------GNTDIYTMDLRSGTTTRL--TDSPAIDTSPSYSPDGSQ----IVFESD 309 (435)
T ss_pred --------------------------------CCceEEEEECCCCceEEc--cCCCCccCceeEcCCCCE----EEEEEC
Confidence 347899999999999999 555555667999999999 999884
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||++|+ ++++.++|+...+....|.|||||++|+|.+...
T Consensus 310 ~~g------------~~~Iy~~d~-----------------~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~----- 355 (435)
T PRK05137 310 RSG------------SPQLYVMNA-----------------DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG----- 355 (435)
T ss_pred CCC------------CCeEEEEEC-----------------CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC-----
Confidence 322 238999998 7888889987766677899999999999998653
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe---eEEEEEEC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS---QVIISVNV 420 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~---~~l~~~d~ 420 (771)
+..+|+++|+.++..+.++.+. ....+.|||||+.|+|.+...+. ..||.+++
T Consensus 356 ---~~~~i~~~d~~~~~~~~lt~~~---------------------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 356 ---GQFSIGVMKPDGSGERILTSGF---------------------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred ---CceEEEEEECCCCceEeccCCC---------------------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 2467999998776554443221 13567899999999998875544 58999999
Q ss_pred CCCcEEEecCCCCCceeeEEee
Q 004141 421 SSGELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 421 ~tg~~~~l~~~~~~~~~~~~s~ 442 (771)
++++.++++. .+....+.|+|
T Consensus 412 ~g~~~~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 412 TGRNEREVPT-PGDASDPAWSP 432 (435)
T ss_pred CCCceEEccC-CCCccCcccCC
Confidence 9888888774 33345566664
No 11
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.95 E-value=2.8e-25 Score=241.36 Aligned_cols=281 Identities=15% Similarity=0.167 Sum_probs=207.1
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+..+|+.|+..+.+..+ +|+|...... +...+.||+++. ++.+.++++... ..+..|
T Consensus 165 ~~~d~i~~~ltG~~g~f~~-----------riayv~~~~~---~~~~~~l~i~d~--dG~~~~~l~~~~-----~~~~~p 223 (448)
T PRK04792 165 RISDIVYEKLTGERGAFLT-----------RIAYVVVNDK---DKYPYQLMIADY--DGYNEQMLLRSP-----EPLMSP 223 (448)
T ss_pred HHHHHHHHHhcCCCccccC-----------EEEEEEeeCC---CCCceEEEEEeC--CCCCceEeecCC-----CcccCc
Confidence 3456678888877776643 4577665432 234568888765 444667777665 457789
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|+|++... +..++|.++ .+++.++++...... ..+.|||||++|+|.....
T Consensus 224 ~wSPDG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~g~~----------~~~~wSPDG~~La~~~~~~--------- 283 (448)
T PRK04792 224 AWSPDGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFPGIN----------GAPRFSPDGKKLALVLSKD--------- 283 (448)
T ss_pred eECCCCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCCCCc----------CCeeECCCCCEEEEEEeCC---------
Confidence 9999999999998764 667899888 666666666543322 4789999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.
T Consensus 284 --------------------------------g~~~Iy~~dl~tg~~~~l--t~~~~~~~~p~wSpDG~~----I~f~s~ 325 (448)
T PRK04792 284 --------------------------------GQPEIYVVDIATKALTRI--TRHRAIDTEPSWHPDGKS----LIFTSE 325 (448)
T ss_pred --------------------------------CCeEEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEEC
Confidence 346899999999999998 555445678999999999 999874
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
..+ ..+||.+|+ ++++.++|+.......+|.|||||++|+|.+...
T Consensus 326 ~~g------------~~~Iy~~dl-----------------~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~----- 371 (448)
T PRK04792 326 RGG------------KPQIYRVNL-----------------ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTN----- 371 (448)
T ss_pred CCC------------CceEEEEEC-----------------CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecC-----
Confidence 322 238999998 7788888875544556799999999999987653
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
+..+|+++|+.+++.+.++... ....+.|+|||+.|+|++..++...||.++.+++
T Consensus 372 ---g~~~I~~~dl~~g~~~~lt~~~---------------------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 372 ---GKFNIARQDLETGAMQVLTSTR---------------------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred ---CceEEEEEECCCCCeEEccCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2467999999887765554321 1125689999999999998888888999999777
Q ss_pred cEEEecCCCCCceeeEEee
Q 004141 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..++++...+....+.|+|
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ceEECcCCCCCcCCCccCC
Confidence 7777766555455566665
No 12
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=6.9e-25 Score=238.88 Aligned_cols=282 Identities=15% Similarity=0.118 Sum_probs=206.4
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+..+|+.|+..+.+- +.+|+|+.... ..+...+.||+++. ++.+.++++... ..+..|
T Consensus 150 ~~~d~i~~~~tg~~g~f-----------~~~ia~v~~~~--~~~~~~~~l~i~D~--~g~~~~~lt~~~-----~~v~~p 209 (433)
T PRK04922 150 QIADAIYEKITGVPGAF-----------WTRIAYVTVSG--AGGAMRYALQVADS--DGYNPQTILRSA-----EPILSP 209 (433)
T ss_pred HHHHHHHHHHcCCCCcc-----------cceEEEEEEeC--CCCCceEEEEEECC--CCCCceEeecCC-----Cccccc
Confidence 34566778887665443 24578876543 22345678898775 455677787654 457889
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++... +..+++.++ .+++.++++...... ..+.|||||++|+|.....
T Consensus 210 ~wSpDg~~la~~s~~~-~~~~l~~~dl~~g~~~~l~~~~g~~----------~~~~~SpDG~~l~~~~s~~--------- 269 (433)
T PRK04922 210 AWSPDGKKLAYVSFER-GRSAIYVQDLATGQRELVASFRGIN----------GAPSFSPDGRRLALTLSRD--------- 269 (433)
T ss_pred cCCCCCCEEEEEecCC-CCcEEEEEECCCCCEEEeccCCCCc----------cCceECCCCCEEEEEEeCC---------
Confidence 9999999999998754 567888888 566666665543222 4789999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||++ |+|++.
T Consensus 270 --------------------------------g~~~Iy~~d~~~g~~~~l--t~~~~~~~~~~~spDG~~----l~f~sd 311 (433)
T PRK04922 270 --------------------------------GNPEIYVMDLGSRQLTRL--TNHFGIDTEPTWAPDGKS----IYFTSD 311 (433)
T ss_pred --------------------------------CCceEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEEC
Confidence 336899999999999988 454444567899999999 999984
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||.+++ ++++.++++........|+|||||++|+|.+...
T Consensus 312 ~~g------------~~~iy~~dl-----------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~----- 357 (433)
T PRK04922 312 RGG------------RPQIYRVAA-----------------SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSG----- 357 (433)
T ss_pred CCC------------CceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEECCC-----
Confidence 322 237999998 7788888886555566899999999999987643
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
+..+|+++|+.+++.+.++.+. ....+.|+|||+.|+|.+...+...||.++++++
T Consensus 358 ---~~~~I~v~d~~~g~~~~Lt~~~---------------------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 358 ---GQYRIAVMDLSTGSVRTLTPGS---------------------LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred ---CceeEEEEECCCCCeEECCCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2358999999887766554332 1235689999999999998878889999999887
Q ss_pred cEEEecCCCCCceeeEEee
Q 004141 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..++++...+....+.|+|
T Consensus 414 ~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceEEcccCCCCCCCCccCC
Confidence 7888876544444555554
No 13
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=8.3e-25 Score=237.28 Aligned_cols=278 Identities=15% Similarity=0.172 Sum_probs=202.1
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+.++|+.++..+..-+ .+|+|.... ...++||.++. ++...++++... ..+..|
T Consensus 146 ~~~d~i~~~~tg~~g~f~-----------~~iayv~~~------~~~~~L~~~D~--dG~~~~~l~~~~-----~~v~~p 201 (427)
T PRK02889 146 RIADYIYEKLTGERGVFS-----------TRIAYVIKT------GNRYQLQISDA--DGQNAQSALSSP-----EPIISP 201 (427)
T ss_pred HHHHHHHHHhcCCCcccc-----------cEEEEEEcc------CCccEEEEECC--CCCCceEeccCC-----CCcccc
Confidence 445566777666554332 468887632 23568998765 444666676554 457789
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++... +..++|..+ .+++..+++...... ..+.|||||++|+|.....
T Consensus 202 ~wSPDG~~la~~s~~~-~~~~I~~~dl~~g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~--------- 261 (427)
T PRK02889 202 AWSPDGTKLAYVSFES-KKPVVYVHDLATGRRRVVANFKGSN----------SAPAWSPDGRTLAVALSRD--------- 261 (427)
T ss_pred eEcCCCCEEEEEEccC-CCcEEEEEECCCCCEEEeecCCCCc----------cceEECCCCCEEEEEEccC---------
Confidence 9999999999998754 567788888 566666665543322 4899999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||++ |+|+++
T Consensus 262 --------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----l~f~s~ 303 (427)
T PRK02889 262 --------------------------------GNSQIYTVNADGSGLRRL--TQSSGIDTEPFFSPDGRS----IYFTSD 303 (427)
T ss_pred --------------------------------CCceEEEEECCCCCcEEC--CCCCCCCcCeEEcCCCCE----EEEEec
Confidence 347899999999998888 554445667899999999 999874
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||.+++ .++..++++........|.|||||++|+|.+... |
T Consensus 304 ~~g------------~~~Iy~~~~-----------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~----g 350 (427)
T PRK02889 304 RGG------------APQIYRMPA-----------------SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG----G 350 (427)
T ss_pred CCC------------CcEEEEEEC-----------------CCCceEEEecCCCCcCceEECCCCCEEEEEEccC----C
Confidence 322 237999998 6777777775555566899999999999998764 2
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
..+|+++|+.+++.++++... ....+.|+|||+.|+|.+..++...|+.+++++.
T Consensus 351 ----~~~I~v~d~~~g~~~~lt~~~---------------------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 351 ----AFKLYVQDLATGQVTALTDTT---------------------RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred ----cEEEEEEECCCCCeEEccCCC---------------------CccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence 357999999888765554321 1246789999999999998888888999999766
Q ss_pred cEEEecCCCCCceeeEEee
Q 004141 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..+++....+....+.|+|
T Consensus 406 ~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ceEEeecCCCCCCCCccCC
Confidence 6666765445455566665
No 14
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=7.7e-25 Score=233.94 Aligned_cols=255 Identities=9% Similarity=0.008 Sum_probs=187.4
Q ss_pred eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCe-EEEEecCCCCCCeEEEEe-cC
Q 004141 55 QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK-LLVVRNPENESPIQFELW-SQ 132 (771)
Q Consensus 55 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~-la~~~~~~~~~~~~~~~~-~~ 132 (771)
+++|...... .+.+.||+.|. ++.+.++++.+. ....|.|||||++ ++|++... +..++|.++ .+
T Consensus 156 r~~~v~~~~~----~~~~~l~~~d~--dg~~~~~~~~~~------~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~t 222 (419)
T PRK04043 156 RKVVFSKYTG----PKKSNIVLADY--TLTYQKVIVKGG------LNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLYT 222 (419)
T ss_pred eEEEEEEccC----CCcceEEEECC--CCCceeEEccCC------CeEeEEECCCCCcEEEEEEccC-CCCEEEEEECCC
Confidence 5566554211 23679999775 444666676552 3668999999997 66666643 567999999 67
Q ss_pred CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCccc
Q 004141 133 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 212 (771)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 212 (771)
++.++++...... ..+.|||||++|+|.....
T Consensus 223 g~~~~lt~~~g~~----------~~~~~SPDG~~la~~~~~~-------------------------------------- 254 (419)
T PRK04043 223 GKKEKIASSQGML----------VVSDVSKDGSKLLLTMAPK-------------------------------------- 254 (419)
T ss_pred CcEEEEecCCCcE----------EeeEECCCCCEEEEEEccC--------------------------------------
Confidence 7777777643322 4688999999999986432
Q ss_pred CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 213 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
++.+||++|+++++.++| +........+.|||||++ |+|++++. ...+||.+|+
T Consensus 255 ---g~~~Iy~~dl~~g~~~~L--T~~~~~d~~p~~SPDG~~----I~F~Sdr~------------g~~~Iy~~dl----- 308 (419)
T PRK04043 255 ---GQPDIYLYDTNTKTLTQI--TNYPGIDVNGNFVEDDKR----IVFVSDRL------------GYPNIFMKKL----- 308 (419)
T ss_pred ---CCcEEEEEECCCCcEEEc--ccCCCccCccEECCCCCE----EEEEECCC------------CCceEEEEEC-----
Confidence 347999999999999999 554444557899999999 99998542 2248999999
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004141 293 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++++.++++.... ..+.|||||++|+|.+.......+ ....+|+++|+++++.++++...
T Consensus 309 ------------~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~--~~~~~I~v~d~~~g~~~~LT~~~---- 368 (419)
T PRK04043 309 ------------NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFG--KNTFNLYLISTNSDYIRRLTANG---- 368 (419)
T ss_pred ------------CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccC--CCCcEEEEEECCCCCeEECCCCC----
Confidence 8888888886533 246999999999999976421100 12368999999998877776532
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004141 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
....+.|||||+.|+|.+..++...|+.+++++....++....+
T Consensus 369 -----------------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 369 -----------------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred -----------------CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence 12357899999999999888788889999998777777765444
No 15
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=3.7e-24 Score=234.15 Aligned_cols=282 Identities=15% Similarity=0.166 Sum_probs=205.1
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+..+|+.|+..+... .++|+|.....+. +...+.||+++. ++.+.++++... .....|
T Consensus 145 ~i~d~i~~~ltg~~g~f-----------~~~ia~v~~~~~~--~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p 204 (430)
T PRK00178 145 YISDQSFEKLTGIKGAF-----------STRILYVTAERFS--VNTRYTLQRSDY--DGARAVTLLQSR-----EPILSP 204 (430)
T ss_pred HHHHHHHHHHhCCCccc-----------eeeEEEEEeeCCC--CCcceEEEEECC--CCCCceEEecCC-----Cceeee
Confidence 44566788887666432 2468887654431 224557888665 444666776554 456889
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++... +..++|.++ .+++.++++...... ..+.|||||++|+|.....
T Consensus 205 ~wSpDG~~la~~s~~~-~~~~l~~~~l~~g~~~~l~~~~g~~----------~~~~~SpDG~~la~~~~~~--------- 264 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQ-KRPRIFVQNLDTGRREQITNFEGLN----------GAPAWSPDGSKLAFVLSKD--------- 264 (430)
T ss_pred eECCCCCEEEEEEcCC-CCCEEEEEECCCCCEEEccCCCCCc----------CCeEECCCCCEEEEEEccC---------
Confidence 9999999999998765 567899888 666666665443222 4789999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.
T Consensus 265 --------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~~spDg~~----i~f~s~ 306 (430)
T PRK00178 265 --------------------------------GNPEIYVMDLASRQLSRV--TNHPAIDTEPFWGKDGRT----LYFTSD 306 (430)
T ss_pred --------------------------------CCceEEEEECCCCCeEEc--ccCCCCcCCeEECCCCCE----EEEEEC
Confidence 236899999999999988 555545678899999999 999974
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||.+++ .+++.++++........|.|||||++|+|..... |
T Consensus 307 ~~g------------~~~iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~----~ 353 (430)
T PRK00178 307 RGG------------KPQIYKVNV-----------------NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD----G 353 (430)
T ss_pred CCC------------CceEEEEEC-----------------CCCCEEEeecCCCCccceEECCCCCEEEEEEccC----C
Confidence 322 238999998 7788888876555566799999999999998654 2
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
..+|+++|+.+++.+.++... ....+.|||||+.|+|++...+...||.++++++
T Consensus 354 ----~~~l~~~dl~tg~~~~lt~~~---------------------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 354 ----NFHVAAQDLQRGSVRILTDTS---------------------LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred ----ceEEEEEECCCCCEEEccCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 457999999988766554321 1135689999999999998888888999999776
Q ss_pred cEEEecCCCCCceeeEEee
Q 004141 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..+++....+....+.|++
T Consensus 409 ~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 409 VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ceEECcCCCCCcCCCccCC
Confidence 6667765444444555654
No 16
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.7e-22 Score=209.86 Aligned_cols=302 Identities=20% Similarity=0.244 Sum_probs=226.0
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCCceE
Q 004141 442 LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPF 521 (771)
Q Consensus 442 ~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l 521 (771)
.+...+.|..+++-+|+.+|.+|+..+.-... ...+++..++.+ ....+.+..+ .+.+.||..+
T Consensus 391 ~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~-vf~e~~~~lpg~--------~~s~y~~~r~-------~~~SkDGt~V 454 (712)
T KOG2237|consen 391 FKSSTIRFQFSSFLTPGSIYDYDLANGKPEPS-VFREITVVLPGF--------DASDYVVERI-------EVSSKDGTKV 454 (712)
T ss_pred CCCceEEEEEeccCCCCeEEEeeccCCCCCCc-ceeeeccccCcc--------cccceEEEEE-------EEecCCCCcc
Confidence 36678999999999999999999987641111 112333222211 1222333333 3456678888
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH
Q 004141 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 601 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~ 601 (771)
...++..+..+-.+++|++++.||+.+......|...-..|..+|++....|.||.|++|..|++......-.+.++|++
T Consensus 455 PM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfi 534 (712)
T KOG2237|consen 455 PMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFI 534 (712)
T ss_pred ceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHH
Confidence 88888877666677899999999998877667777655566779999999999999999999998877666677899999
Q ss_pred HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchh-hhhccCCCCccCC
Q 004141 602 TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY-VESYGSKGKDSFT 680 (771)
Q Consensus 602 ~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 680 (771)
+++++|+++++..+++.++.|.|.||.++..++.++|++|+|+|+..|+.|+......+..+-|.. .+.++
T Consensus 535 a~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g-------- 606 (712)
T KOG2237|consen 535 ACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWG-------- 606 (712)
T ss_pred HHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccC--------
Confidence 999999999999999999999999999999999999999999999999999987776666665532 12222
Q ss_pred CCCChhhHHHHhhcCcccccCCCC-----CcEEEEeeCCCCccCcHHHHHHHHHHHhC-------CCCEEEEEeCCCCcc
Q 004141 681 ESPSVEDLTRFHSKSPISHISKVK-----TPTIFLLGAQDLRVPVSNGLQYARALREK-------GVETKVIVFPNDVHG 748 (771)
Q Consensus 681 ~~~~~~~~~~~~~~sp~~~~~~i~-----~P~lii~G~~D~~vp~~~~~~~~~~l~~~-------g~~~~~~~~~~~~H~ 748 (771)
.+++...+...+|...+++++ +-+|+..+.+|.+|++.++..+.++|+.. ..++-+.+..++||+
T Consensus 607 ---~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~ 683 (712)
T KOG2237|consen 607 ---NPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHG 683 (712)
T ss_pred ---ChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccc
Confidence 234555666666666555553 45899999999999999999999999864 135778889999997
Q ss_pred CCCCCC-hHHHHHHHHHHHHHhh
Q 004141 749 IERPQS-DFESFLNIGLWFKKYC 770 (771)
Q Consensus 749 ~~~~~~-~~~~~~~i~~fl~~~L 770 (771)
.-.+.. ..+-.....+||.+.+
T Consensus 684 ~~~~~~k~~~E~a~~yaFl~K~~ 706 (712)
T KOG2237|consen 684 AEKPRFKQIEEAAFRYAFLAKML 706 (712)
T ss_pred cCCchHHHHHHHHHHHHHHHHHh
Confidence 654322 1222334566776654
No 17
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=4.8e-23 Score=223.94 Aligned_cols=274 Identities=13% Similarity=0.141 Sum_probs=193.6
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+.++|+.|+..+.+- +++|+|+....+ +.+.+.||+++.+ +.+.++++... ..+..|
T Consensus 151 ~~~d~i~~~ltg~~g~f-----------~~ria~v~~~~~---~~~~~~i~i~d~d--g~~~~~lt~~~-----~~v~~p 209 (429)
T PRK01742 151 TVSDEVFEKLTAIRGAF-----------RTRIAYVVQKNG---GSQPYEVRVADYD--GFNQFIVNRSS-----QPLMSP 209 (429)
T ss_pred HHHHHHHHHHcCCCCcc-----------CCEEEEEEEEcC---CCceEEEEEECCC--CCCceEeccCC-----Cccccc
Confidence 34566788887777665 357788876543 2345789998763 43555666544 457889
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++..+ +..+++..+ .+++.+.+....... ..++|||||++|+|.....
T Consensus 210 ~wSPDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~g~~----------~~~~wSPDG~~La~~~~~~--------- 269 (429)
T PRK01742 210 AWSPDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFRGHN----------GAPAFSPDGSRLAFASSKD--------- 269 (429)
T ss_pred eEcCCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCCCcc----------CceeECCCCCEEEEEEecC---------
Confidence 9999999999998754 556788777 555555555443222 4789999999999975422
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.
T Consensus 270 --------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----i~f~s~ 311 (429)
T PRK01742 270 --------------------------------GVLNIYVMGANGGTPSQL--TSGAGNNTEPSWSPDGQS----ILFTSD 311 (429)
T ss_pred --------------------------------CcEEEEEEECCCCCeEee--ccCCCCcCCEEECCCCCE----EEEEEC
Confidence 235799999999999998 555556778999999999 999974
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||.++. .++..+.++. .. ..+.|||||++|+|.+..
T Consensus 312 ~~g------------~~~I~~~~~-----------------~~~~~~~l~~-~~--~~~~~SpDG~~ia~~~~~------ 353 (429)
T PRK01742 312 RSG------------SPQVYRMSA-----------------SGGGASLVGG-RG--YSAQISADGKTLVMINGD------ 353 (429)
T ss_pred CCC------------CceEEEEEC-----------------CCCCeEEecC-CC--CCccCCCCCCEEEEEcCC------
Confidence 322 238999997 5666666643 22 468999999999998642
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
+|+++|+.++....++... ....+.|+|||+.|++.+..++...++.++.+++
T Consensus 354 ------~i~~~Dl~~g~~~~lt~~~---------------------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 354 ------NVVKQDLTSGSTEVLSSTF---------------------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred ------CEEEEECCCCCeEEecCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 3888998887654332211 1235789999999999887655556777788777
Q ss_pred cEEEecCCCCCceeeEEee
Q 004141 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..++|....+....+.|+|
T Consensus 407 ~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred ceEEccCCCCCCCCcccCC
Confidence 7778865555455566765
No 18
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=4.4e-23 Score=225.09 Aligned_cols=245 Identities=13% Similarity=0.121 Sum_probs=187.5
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004141 109 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 109 dG~~la~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
-..+|||+++..++ ..++|+++ ++...++++...... ..++|||||++|+|++...
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v----------~~p~wSpDG~~lay~s~~~---------- 223 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLV----------LTPRFSPNRQEITYMSYAN---------- 223 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCe----------EeeEECCCCCEEEEEEecC----------
Confidence 45689999876532 45788777 566667777543333 5899999999999986542
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004141 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+.+++.+++ +........+.|||||+. |+|+...
T Consensus 224 -------------------------------g~~~i~~~dl~~g~~~~l--~~~~g~~~~~~~SPDG~~----la~~~~~ 266 (435)
T PRK05137 224 -------------------------------GRPRVYLLDLETGQRELV--GNFPGMTFAPRFSPDGRK----VVMSLSQ 266 (435)
T ss_pred -------------------------------CCCEEEEEECCCCcEEEe--ecCCCcccCcEECCCCCE----EEEEEec
Confidence 347999999999998888 444445668899999999 9998632
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004141 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||.+|+ ++++.++|+.......+|.|||||++|+|.+.+. |
T Consensus 267 ~------------g~~~Iy~~d~-----------------~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~----g- 312 (435)
T PRK05137 267 G------------GNTDIYTMDL-----------------RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS----G- 312 (435)
T ss_pred C------------CCceEEEEEC-----------------CCCceEEccCCCCccCceeEcCCCCEEEEEECCC----C-
Confidence 2 3358999998 8888999998877788899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... .....+.|||||+.|++.....+...|+.++++++.
T Consensus 313 ---~~~Iy~~d~~g~~~~~lt~~~--------------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 313 ---SPQLYVMNADGSNPRRISFGG--------------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred ---CCeEEEEECCCCCeEEeecCC--------------------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 468999999887665554321 023457899999999998866666789999998888
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCC--CeEEEEEeccc
Q 004141 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV--PQVKYGYFVDK 468 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p--~~l~~~~~~~~ 468 (771)
.+.++... ....+.|+|||+.|+++....... ..||+.++.++
T Consensus 370 ~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 370 ERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 87776543 345688999999999988766553 57999887544
No 19
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=7.6e-23 Score=218.64 Aligned_cols=239 Identities=11% Similarity=0.057 Sum_probs=181.1
Q ss_pred CeEEEEecC-CCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCe-EEEEecCCCCCCCCccCCCCC
Q 004141 111 SKLLVVRNP-ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~-la~~~~~~~~~~~~~~~~~~~ 187 (771)
.++||+... .....+++.++ ++.+.+.++... .. ..+.|||||++ ++|.+...
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~--~~---------~~p~wSpDG~~~i~y~s~~~------------- 210 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG--LN---------IFPKWANKEQTAFYYTSYGE------------- 210 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCC--Ce---------EeEEECCCCCcEEEEEEccC-------------
Confidence 467777653 32367899888 555555565532 22 48999999997 66665432
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 004141 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 267 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~ 267 (771)
+.++||++|+.+|+.+++ +........+.|||||++ |+|+....
T Consensus 211 ----------------------------~~~~Iyv~dl~tg~~~~l--t~~~g~~~~~~~SPDG~~----la~~~~~~-- 254 (419)
T PRK04043 211 ----------------------------RKPTLYKYNLYTGKKEKI--ASSQGMLVVSDVSKDGSK----LLLTMAPK-- 254 (419)
T ss_pred ----------------------------CCCEEEEEECCCCcEEEE--ecCCCcEEeeEECCCCCE----EEEEEccC--
Confidence 247999999999999999 444444567899999999 99987432
Q ss_pred eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004141 268 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 268 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
.+.+||++++ ++++.++||........|.|||||++|+|.+++. |
T Consensus 255 ----------g~~~Iy~~dl-----------------~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~----g---- 299 (419)
T PRK04043 255 ----------GQPDIYLYDT-----------------NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL----G---- 299 (419)
T ss_pred ----------CCcEEEEEEC-----------------CCCcEEEcccCCCccCccEECCCCCEEEEEECCC----C----
Confidence 3458999998 8888999998777677899999999999999874 2
Q ss_pred cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC------CeeEEEEEECC
Q 004141 348 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG------SSQVIISVNVS 421 (771)
Q Consensus 348 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~------~~~~l~~~d~~ 421 (771)
..+||++|+.+++.++++... .....|||||+.|+|..... +..+||.+|++
T Consensus 300 ~~~Iy~~dl~~g~~~rlt~~g----------------------~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 300 YPNIFMKKLNSGSVEQVVFHG----------------------KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CceEEEEECCCCCeEeCccCC----------------------CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 468999999988876654321 11247999999999988644 33689999999
Q ss_pred CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 422 SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 422 tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+|+.++|+.... ...+.|+|||+.|+|+... ..-..|++.++...
T Consensus 358 ~g~~~~LT~~~~-~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 358 SDYIRRLTANGV-NQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCCeEECCCCCC-cCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 999999998643 3458999999999998765 44456888887543
No 20
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=8e-23 Score=220.29 Aligned_cols=251 Identities=15% Similarity=0.164 Sum_probs=182.2
Q ss_pred EEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCe--EEEEecCCC
Q 004141 104 VVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL--IAYVAEEPS 175 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~--la~~~~~~~ 175 (771)
+.++ +++|||+....+ ....+|+++ ++++.+++|...... ..|.|||||++ ++|++...
T Consensus 142 ~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~----------~sP~wSPDG~~~~~~y~S~~~- 208 (428)
T PRK01029 142 PGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLS----------ITPTWMHIGSGFPYLYVSYKL- 208 (428)
T ss_pred Cccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCc----------ccceEccCCCceEEEEEEccC-
Confidence 4555 999999987542 245799998 777788887743333 48999999998 55576543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
+.++||++++++|+.+++ +........+.|||||++
T Consensus 209 ----------------------------------------g~~~I~~~~l~~g~~~~l--t~~~g~~~~p~wSPDG~~-- 244 (428)
T PRK01029 209 ----------------------------------------GVPKIFLGSLENPAGKKI--LALQGNQLMPTFSPRKKL-- 244 (428)
T ss_pred ----------------------------------------CCceEEEEECCCCCceEe--ecCCCCccceEECCCCCE--
Confidence 347999999999999998 444445667999999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEE--ecccccchhhhhhhhcCCCCCCcceecCCCC-ccccceeecCCCCEEE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAV--RVSLYKSEASELELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLV 332 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~-~~~~~p~~SpDG~~l~ 332 (771)
|+|++...+ ..+||.. +++. ..++..++++... .....|+|||||++|+
T Consensus 245 --Laf~s~~~g------------~~di~~~~~~~~~--------------g~~g~~~~lt~~~~~~~~~p~wSPDG~~La 296 (428)
T PRK01029 245 --LAFISDRYG------------NPDLFIQSFSLET--------------GAIGKPRRLLNEAFGTQGNPSFSPDGTRLV 296 (428)
T ss_pred --EEEEECCCC------------CcceeEEEeeccc--------------CCCCcceEeecCCCCCcCCeEECCCCCEEE
Confidence 999984322 2256664 4410 0135677888654 3467899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCCCC--CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
|.+.+. | ..+||++++.+.+ .++++... .....+.|||||+.|+|.....
T Consensus 297 f~s~~~----g----~~~ly~~~~~~~g~~~~~lt~~~--------------------~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 297 FVSNKD----G----RPRIYIMQIDPEGQSPRLLTKKY--------------------RNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred EEECCC----C----CceEEEEECcccccceEEeccCC--------------------CCccceeECCCCCEEEEEEcCC
Confidence 998764 2 4579999885422 22332211 0234678999999999988777
Q ss_pred CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 411 SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+..+|+.+|+++|+.++++........+.|++||+.|++..... ....||+.++.++
T Consensus 349 g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl~~g 405 (428)
T PRK01029 349 GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS-NESELYLISLITK 405 (428)
T ss_pred CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCC
Confidence 77789999999999999987654456689999999999887654 3467998887654
No 21
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=3.8e-22 Score=216.19 Aligned_cols=241 Identities=17% Similarity=0.164 Sum_probs=181.9
Q ss_pred CeEEEEecCCCC--CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCC
Q 004141 111 SKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 187 (771)
++|||+....++ ..++++++ ++.+.++++...... ..++|||||++|+|++...
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~----------~~p~wSPDG~~la~~s~~~------------- 220 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 220 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCce----------eeeEEcCCCCEEEEEEecC-------------
Confidence 789999875322 45678777 566667776643333 5899999999999986432
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 004141 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 267 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~ 267 (771)
+..+||++|+.+|+.+.+ +........+.|||||+. |+|+....
T Consensus 221 ----------------------------g~~~i~i~dl~~G~~~~l--~~~~~~~~~~~~SPDG~~----La~~~~~~-- 264 (429)
T PRK03629 221 ----------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSKT-- 264 (429)
T ss_pred ----------------------------CCcEEEEEECCCCCeEEc--cCCCCCcCCeEECCCCCE----EEEEEcCC--
Confidence 347899999999998888 443334567999999999 99986422
Q ss_pred eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004141 268 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 268 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
...+||++|+ ++++.++++.....+..|.|||||++|+|.+.+. |
T Consensus 265 ----------g~~~I~~~d~-----------------~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~----g---- 309 (429)
T PRK03629 265 ----------GSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA----G---- 309 (429)
T ss_pred ----------CCcEEEEEEC-----------------CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC----C----
Confidence 2237999998 8888999998777788999999999999999764 2
Q ss_pred cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004141 348 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 348 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
..+||++|+.+++.++++... .....+.|||||+.|++.....+...||.+|+++++.+.
T Consensus 310 ~~~Iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 310 RPQVYKVNINGGAPQRITWEG--------------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred CceEEEEECCCCCeEEeecCC--------------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 468999999887654443211 012457899999999998877777789999999999999
Q ss_pred ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 428 l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
|+.... ...+.|+|||+.|++...... ...+++.++..
T Consensus 370 Lt~~~~-~~~p~~SpDG~~i~~~s~~~~-~~~l~~~~~~G 407 (429)
T PRK03629 370 LTDTFL-DETPSIAPNGTMVIYSSSQGM-GSVLNLVSTDG 407 (429)
T ss_pred eCCCCC-CCCceECCCCCEEEEEEcCCC-ceEEEEEECCC
Confidence 986432 345789999999999886543 35577777643
No 22
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=6.2e-22 Score=214.85 Aligned_cols=239 Identities=17% Similarity=0.186 Sum_probs=180.1
Q ss_pred CeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC
Q 004141 111 SKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 189 (771)
Q Consensus 111 ~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 189 (771)
.+|||+.... +..+++.++ ++...++++...... ..++|||||++|+|.+...
T Consensus 164 ~~iayv~~~~-~~~~L~~~D~dG~~~~~l~~~~~~v----------~~p~wSPDG~~la~~s~~~--------------- 217 (427)
T PRK02889 164 TRIAYVIKTG-NRYQLQISDADGQNAQSALSSPEPI----------ISPAWSPDGTKLAYVSFES--------------- 217 (427)
T ss_pred cEEEEEEccC-CccEEEEECCCCCCceEeccCCCCc----------ccceEcCCCCEEEEEEccC---------------
Confidence 5799998543 556788777 454556665543333 5899999999999986532
Q ss_pred CCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCccee
Q 004141 190 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 269 (771)
Q Consensus 190 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~ 269 (771)
..++||++|+.+++.+++ +........++|||||+. |+|+....
T Consensus 218 --------------------------~~~~I~~~dl~~g~~~~l--~~~~g~~~~~~~SPDG~~----la~~~~~~---- 261 (427)
T PRK02889 218 --------------------------KKPVVYVHDLATGRRRVV--ANFKGSNSAPAWSPDGRT----LAVALSRD---- 261 (427)
T ss_pred --------------------------CCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCE----EEEEEccC----
Confidence 347899999999998888 433345568999999999 99976322
Q ss_pred eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004141 270 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 270 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
...+||.+|+ .++..++|+.......+|.|||||++|+|.+++. | ..
T Consensus 262 --------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~----g----~~ 308 (427)
T PRK02889 262 --------GNSQIYTVNA-----------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG----G----AP 308 (427)
T ss_pred --------CCceEEEEEC-----------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCC----C----Cc
Confidence 3358999998 7788889988776778899999999999998764 2 46
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
+||.+++.++..++++... . ....+.|||||+.|++.+...+..+|+.+|+.+++.++++
T Consensus 309 ~Iy~~~~~~g~~~~lt~~g-----------------~---~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 309 QIYRMPASGGAAQRVTFTG-----------------S---YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEEEECCCCceEEEecCC-----------------C---CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 7999998776554432111 0 1235789999999999887666778999999999999888
Q ss_pred CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 430 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 430 ~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.... ...+.|+|||+.|++....... ..+++.++.
T Consensus 369 ~~~~-~~~p~~spdg~~l~~~~~~~g~-~~l~~~~~~ 403 (427)
T PRK02889 369 DTTR-DESPSFAPNGRYILYATQQGGR-SVLAAVSSD 403 (427)
T ss_pred CCCC-ccCceECCCCCEEEEEEecCCC-EEEEEEECC
Confidence 6533 3567999999999999876654 568887764
No 23
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=1.7e-21 Score=211.81 Aligned_cols=241 Identities=16% Similarity=0.184 Sum_probs=179.6
Q ss_pred CCeEEEEecCCCC--CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC
Q 004141 110 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 186 (771)
Q Consensus 110 G~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 186 (771)
..+|||+....+. ..+++.++ ++.+.+.++...... ..+.|||||++|+|++...
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~~p~wSPDG~~La~~s~~~------------ 239 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPL----------MSPAWSPDGRKLAYVSFEN------------ 239 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcc----------cCceECCCCCEEEEEEecC------------
Confidence 3578888765422 34666666 555566666654333 5899999999999986532
Q ss_pred CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCc
Q 004141 187 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~ 266 (771)
+..+||++|+.+++.+.+ +........+.|||||+. |+|+....
T Consensus 240 -----------------------------g~~~L~~~dl~tg~~~~l--t~~~g~~~~~~wSPDG~~----La~~~~~~- 283 (448)
T PRK04792 240 -----------------------------RKAEIFVQDIYTQVREKV--TSFPGINGAPRFSPDGKK----LALVLSKD- 283 (448)
T ss_pred -----------------------------CCcEEEEEECCCCCeEEe--cCCCCCcCCeeECCCCCE----EEEEEeCC-
Confidence 347899999999998888 333334557899999999 99986432
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004141 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
...+||++|+ ++++.++|+........|.|||||++|+|.+.+. |
T Consensus 284 -----------g~~~Iy~~dl-----------------~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~----g--- 328 (448)
T PRK04792 284 -----------GQPEIYVVDI-----------------ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG----G--- 328 (448)
T ss_pred -----------CCeEEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC----C---
Confidence 2348999998 8888899998766778899999999999998664 2
Q ss_pred ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004141 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 347 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
..+||++|+.+++.++++... . ....++|||||+.|+|.....+..+||.+|+++++.+
T Consensus 329 -~~~Iy~~dl~~g~~~~Lt~~g-----------------~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 329 -KPQIYRVNLASGKVSRLTFEG-----------------E---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred -CceEEEEECCCCCEEEEecCC-----------------C---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 468999999887765443111 0 1235689999999999887677778999999999998
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.++....+ ..+.|+|||+.|++...... ...||+.+..
T Consensus 388 ~lt~~~~d-~~ps~spdG~~I~~~~~~~g-~~~l~~~~~~ 425 (448)
T PRK04792 388 VLTSTRLD-ESPSVAPNGTMVIYSTTYQG-KQVLAAVSID 425 (448)
T ss_pred EccCCCCC-CCceECCCCCEEEEEEecCC-ceEEEEEECC
Confidence 88865332 34689999999998886543 4568887764
No 24
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=4.6e-21 Score=208.87 Aligned_cols=243 Identities=14% Similarity=0.133 Sum_probs=180.3
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004141 109 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 109 dG~~la~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
=+++|||++...++ ..++++++ ++.+.++++...... ..+.|||||++|+|++...
T Consensus 166 f~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v----------~~p~wSpDg~~la~~s~~~---------- 225 (433)
T PRK04922 166 FWTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPI----------LSPAWSPDGKKLAYVSFER---------- 225 (433)
T ss_pred ccceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCcc----------ccccCCCCCCEEEEEecCC----------
Confidence 35679998765322 23466555 455566676543333 5899999999999986432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004141 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+.+++.+.+ +........+.|||||+. |+|+...
T Consensus 226 -------------------------------~~~~l~~~dl~~g~~~~l--~~~~g~~~~~~~SpDG~~----l~~~~s~ 268 (433)
T PRK04922 226 -------------------------------GRSAIYVQDLATGQRELV--ASFRGINGAPSFSPDGRR----LALTLSR 268 (433)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEe--ccCCCCccCceECCCCCE----EEEEEeC
Confidence 347899999999998888 333334557899999999 9998643
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004141 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||++|+ .+++.++++.......+|.|||||++|+|.+.+. |
T Consensus 269 ~------------g~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~----g- 314 (433)
T PRK04922 269 D------------GNPEIYVMDL-----------------GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG----G- 314 (433)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC----C-
Confidence 2 2348999998 7888899988766677899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... . ....++|||||+.|++....++..+|+.+|+.+++
T Consensus 315 ---~~~iy~~dl~~g~~~~lt~~g-----------------~---~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 315 ---RPQIYRVAASGGSAERLTFQG-----------------N---YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred ---CceEEEEECCCCCeEEeecCC-----------------C---CccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 358999999887665543211 0 12357899999999998766666789999999999
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
.+.|+.... ...+.|++||+.|++..... .-..||+.++..
T Consensus 372 ~~~Lt~~~~-~~~p~~spdG~~i~~~s~~~-g~~~L~~~~~~g 412 (433)
T PRK04922 372 VRTLTPGSL-DESPSFAPNGSMVLYATREG-GRGVLAAVSTDG 412 (433)
T ss_pred eEECCCCCC-CCCceECCCCCEEEEEEecC-CceEEEEEECCC
Confidence 998886543 34578999999999988764 346788887643
No 25
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=5.2e-21 Score=209.36 Aligned_cols=242 Identities=15% Similarity=0.174 Sum_probs=179.8
Q ss_pred CCCeEEEEecCCC---CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004141 109 SGSKLLVVRNPEN---ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 109 dG~~la~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
..++|||++.... +..+++.++ ++++.+.++...... ..++|||||++|+|++...
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~wSpDG~~la~~s~~~---------- 220 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPI----------LSPRWSPDGKRIAYVSFEQ---------- 220 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCce----------eeeeECCCCCEEEEEEcCC----------
Confidence 4567999876432 233566666 555555665543332 5899999999999986532
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004141 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+++++.+.+ +........+.|||||++ |+|+...
T Consensus 221 -------------------------------~~~~l~~~~l~~g~~~~l--~~~~g~~~~~~~SpDG~~----la~~~~~ 263 (430)
T PRK00178 221 -------------------------------KRPRIFVQNLDTGRREQI--TNFEGLNGAPAWSPDGSK----LAFVLSK 263 (430)
T ss_pred -------------------------------CCCEEEEEECCCCCEEEc--cCCCCCcCCeEECCCCCE----EEEEEcc
Confidence 347899999999999888 443334557999999999 9998743
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004141 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||++|+ ++++.++|+.......+|.|||||++|+|.+.+. |
T Consensus 264 ~------------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~----g- 309 (430)
T PRK00178 264 D------------GNPEIYVMDL-----------------ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG----G- 309 (430)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC----C-
Confidence 2 2348999998 7888889998777788899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... .....+.|||||+.|+|.....+...|+.+|+++++
T Consensus 310 ---~~~iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 310 ---KPQIYKVNVNGGRAERVTFVG--------------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred ---CceEEEEECCCCCEEEeecCC--------------------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 468999999887754443111 012356899999999998876666789999999999
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.+.|+..... ..+.|+|||+.++++...... ..|++.++.
T Consensus 367 ~~~lt~~~~~-~~p~~spdg~~i~~~~~~~g~-~~l~~~~~~ 406 (430)
T PRK00178 367 VRILTDTSLD-ESPSVAPNGTMLIYATRQQGR-GVLMLVSIN 406 (430)
T ss_pred EEEccCCCCC-CCceECCCCCEEEEEEecCCc-eEEEEEECC
Confidence 9999875433 357899999999998865443 468887764
No 26
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.88 E-value=2.4e-20 Score=204.10 Aligned_cols=254 Identities=16% Similarity=0.195 Sum_probs=183.7
Q ss_pred cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-c
Q 004141 53 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-S 131 (771)
Q Consensus 53 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~ 131 (771)
+.+++|..... +...+.||+++. .+.+.++++... .....|+|||||++|||+.... +..+++.++ .
T Consensus 155 ~~~~~~~~~~~----~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~ 222 (417)
T TIGR02800 155 STRIAYVSKSG----KSRRYELQVADY--DGANPQTITRSR-----EPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLA 222 (417)
T ss_pred CCEEEEEEEeC----CCCcceEEEEcC--CCCCCEEeecCC-----CceecccCCCCCCEEEEEEcCC-CCcEEEEEECC
Confidence 45677775432 245678888775 344567776543 3477899999999999987654 556788777 5
Q ss_pred CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcc
Q 004141 132 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 211 (771)
Q Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 211 (771)
++...++....... ..++|||||++|+|.....
T Consensus 223 ~g~~~~~~~~~~~~----------~~~~~spDg~~l~~~~~~~------------------------------------- 255 (417)
T TIGR02800 223 TGQREKVASFPGMN----------GAPAFSPDGSKLAVSLSKD------------------------------------- 255 (417)
T ss_pred CCCEEEeecCCCCc----------cceEECCCCCEEEEEECCC-------------------------------------
Confidence 55555554433222 4789999999999975432
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004141 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
+..+||++|+.+++.+.+ +........+.|+|||++ |+|++...+ ..+||.+++
T Consensus 256 ----~~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~s~dg~~----l~~~s~~~g------------~~~iy~~d~---- 309 (417)
T TIGR02800 256 ----GNPDIYVMDLDGKQLTRL--TNGPGIDTEPSWSPDGKS----IAFTSDRGG------------SPQIYMMDA---- 309 (417)
T ss_pred ----CCccEEEEECCCCCEEEC--CCCCCCCCCEEECCCCCE----EEEEECCCC------------CceEEEEEC----
Confidence 346899999999998888 444444567899999999 999874322 237999998
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 292 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
.+++.++++........|.|||||++|+|..... ...+|+++|+.++..+.++...
T Consensus 310 -------------~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~--------~~~~i~~~d~~~~~~~~l~~~~--- 365 (417)
T TIGR02800 310 -------------DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG--------GGFNIAVMDLDGGGERVLTDTG--- 365 (417)
T ss_pred -------------CCCCEEEeecCCCCccCeEECCCCCEEEEEEccC--------CceEEEEEeCCCCCeEEccCCC---
Confidence 7777888887766778899999999999998763 2467999999876544333211
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
....+.|+|||+.|++.+..++...++.++.+++..+.++...+
T Consensus 366 ------------------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g 409 (417)
T TIGR02800 366 ------------------LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNG 409 (417)
T ss_pred ------------------CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCC
Confidence 12356899999999999988777788888887666766765433
No 27
>PRK13604 luxD acyl transferase; Provisional
Probab=99.88 E-value=4.7e-21 Score=190.48 Aligned_cols=223 Identities=13% Similarity=0.073 Sum_probs=151.8
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCC-CCCChhhhhcCCCCc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKV 592 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~-~~~g~~~~~~~~~~~ 592 (771)
...+|..|.||+..|++. ..++.++||++||..... ..+...+++|+++||.|+.+|+||. ++++.++....
T Consensus 15 ~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~~--~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t---- 87 (307)
T PRK13604 15 CLENGQSIRVWETLPKEN-SPKKNNTILIASGFARRM--DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFT---- 87 (307)
T ss_pred EcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCCh--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCc----
Confidence 455799999999999742 346778999999966542 3477889999999999999999875 55544432111
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
......|+.++++|+.++. .++|+|+||||||.+++.+|.. + .++++|+.+|+.++.......-..++.......
T Consensus 88 ~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~~~~~~~~~p~~~ 162 (307)
T PRK13604 88 MSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERALGYDYLSLPIDE 162 (307)
T ss_pred ccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHhhhcccccCcccc
Confidence 1123789999999998763 4689999999999998766664 2 489999999999865332210000000000000
Q ss_pred CCCCccCCCCCCh--hhHHH------HhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 673 SKGKDSFTESPSV--EDLTR------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 673 ~~~~~~~~~~~~~--~~~~~------~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
....-.+.+.... ..... ....+|+..+.+++.|+|+|||+.|..||++.+++++++++. .+.+++.+||
T Consensus 163 lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~kkl~~i~G 240 (307)
T PRK13604 163 LPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQCKLYSLIG 240 (307)
T ss_pred cccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCcEEEEeCC
Confidence 0000001111110 00011 113456677888899999999999999999999999998764 3589999999
Q ss_pred CCccCC
Q 004141 745 DVHGIE 750 (771)
Q Consensus 745 ~~H~~~ 750 (771)
+.|.+.
T Consensus 241 a~H~l~ 246 (307)
T PRK13604 241 SSHDLG 246 (307)
T ss_pred CccccC
Confidence 999886
No 28
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.88 E-value=2.3e-21 Score=205.06 Aligned_cols=330 Identities=16% Similarity=0.152 Sum_probs=214.0
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
||||+.+.+..+....-+......++++++... +.++++.. ......+.|||||++|||+++.+ +|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~--~~~~l~~~-----~~~~~~~~~sP~g~~~~~v~~~n-----ly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG--EITPLTPP-----PPKLQDAKWSPDGKYIAFVRDNN-----LYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT--EEEESS-E-----ETTBSEEEE-SSSTEEEEEETTE-----EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC--ceEECcCC-----ccccccceeecCCCeeEEEecCc-----eEEE
Confidence 689999999888776666667788899887443 44555433 24578999999999999998765 8888
Q ss_pred e-cCCcceEEEecC-----CcccccccCCC---cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCC
Q 004141 130 W-SQSQLEKEFHVP-----QTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 200 (771)
Q Consensus 130 ~-~~~~~~~~~~~~-----~~~~g~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (771)
. .++..+++|.-. .+..+.+|.++ ....+.|||||++|||...+......+.............. ..
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~----~~ 144 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPE----VE 144 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-E----EE
T ss_pred ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCc----cc
Confidence 7 566667777643 12233444443 33588999999999999866543321111100000000000 00
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCC----CCCCccceEEEecCCCCCccEEEEEe-ecCcceeeeeeee
Q 004141 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI----PKSLSVGQVVWAPLNEGLHQYLVFVG-WSSETRKLGIKYC 275 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~----~~~~~~~~~~wspDg~~~~~~l~~~~-~~~~~~~~g~~~~ 275 (771)
.+.| |.-|.. .....|+++|+++++...+... +.+..+..+.|++|++. |++.. ++.
T Consensus 145 ~~~Y-Pk~G~~---np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~----l~~~~~nR~---------- 206 (353)
T PF00930_consen 145 SIRY-PKAGDP---NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR----LWVQWLNRD---------- 206 (353)
T ss_dssp EEE---BTTS------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE----EEEEEEETT----------
T ss_pred cccc-CCCCCc---CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE----EEEEEcccC----------
Confidence 1111 111211 1345899999999987665311 23456788999999996 66653 222
Q ss_pred ccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC---CCc--cccceeec-CCCCEEEEEecCCCCCCCCccccc
Q 004141 276 YNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE---SIS--SAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 276 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~---~~~--~~~~p~~S-pDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
+....|+.+|+ .++..+.+.. ... ....+.|. ++|..++|++.++ | ..
T Consensus 207 -q~~~~l~~~d~-----------------~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~----G----~~ 260 (353)
T PF00930_consen 207 -QNRLDLVLCDA-----------------STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD----G----YR 260 (353)
T ss_dssp -STEEEEEEEEE-----------------CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT----S----SE
T ss_pred -CCEEEEEEEEC-----------------CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC----C----Cc
Confidence 22336778887 5555443321 111 13345655 9999999999864 3 67
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC--CeeEEEEEECC-CCcEE
Q 004141 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVIISVNVS-SGELL 426 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~--~~~~l~~~d~~-tg~~~ 426 (771)
+|++++..++..+++|.+..++.. ...|.++++.|+|.+..+ ...+||+++++ +++++
T Consensus 261 hly~~~~~~~~~~~lT~G~~~V~~-------------------i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~ 321 (353)
T PF00930_consen 261 HLYLYDLDGGKPRQLTSGDWEVTS-------------------ILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK 321 (353)
T ss_dssp EEEEEETTSSEEEESS-SSS-EEE-------------------EEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE
T ss_pred EEEEEcccccceeccccCceeecc-------------------cceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE
Confidence 899999999888888887766533 236888999999999853 57799999999 99999
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCC
Q 004141 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 458 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~ 458 (771)
+||..........||+++++++..+++++.|+
T Consensus 322 ~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 322 CLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp ESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred eccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 99988775556899999999999999999985
No 29
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.87 E-value=1.2e-20 Score=199.54 Aligned_cols=270 Identities=16% Similarity=0.168 Sum_probs=197.9
Q ss_pred HHHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceE
Q 004141 24 YASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASA 103 (771)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~ 103 (771)
...+..+|+.++.++......+ +|.... ..+...++++..|.+ +.....++... .....
T Consensus 139 h~~ad~~~e~lt~~~g~~~~~i-----------~~v~~~---~~~~~~~~l~~~D~d--g~~~~~l~~~~-----~~~~~ 197 (425)
T COG0823 139 HTIADAIYEKLTGIKGAFDTRI-----------AYVAES---DGGPLPYELALGDYD--GYNQQKLTDSG-----SLILT 197 (425)
T ss_pred chhhhhhhhhhcCCcceecceE-----------EEEeec---ccCCCCceEEEEccC--CcceeEecccC-----cceec
Confidence 3456667788887777765444 332211 334466788886643 44455555554 34678
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCcc
Q 004141 104 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 182 (771)
|.|||||++++|+.-..++..++|.+. ..+...+++...... ..++|||||++|+|...+.
T Consensus 198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~----------~~P~fspDG~~l~f~~~rd-------- 259 (425)
T COG0823 198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN----------GAPAFSPDGSKLAFSSSRD-------- 259 (425)
T ss_pred cccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc----------CCccCCCCCCEEEEEECCC--------
Confidence 999999999999987664447888888 666666776654333 5899999999999987654
Q ss_pred CCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 183 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
+..+||++|+.+++..+| +........+.|||||++ |||++
T Consensus 260 ---------------------------------g~~~iy~~dl~~~~~~~L--t~~~gi~~~Ps~spdG~~----ivf~S 300 (425)
T COG0823 260 ---------------------------------GSPDIYLMDLDGKNLPRL--TNGFGINTSPSWSPDGSK----IVFTS 300 (425)
T ss_pred ---------------------------------CCccEEEEcCCCCcceec--ccCCccccCccCCCCCCE----EEEEe
Confidence 458999999999998888 565555669999999999 99998
Q ss_pred ecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCC
Q 004141 263 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDS 342 (771)
Q Consensus 263 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~ 342 (771)
.+.+ ..+||++++ +++..+++|...+....|.|||||++|+|.+...
T Consensus 301 dr~G------------~p~I~~~~~-----------------~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~---- 347 (425)
T COG0823 301 DRGG------------RPQIYLYDL-----------------EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG---- 347 (425)
T ss_pred CCCC------------CcceEEECC-----------------CCCceeEeeccCCCCcCccCCCCCCEEEEEeccC----
Confidence 5433 238999998 8888899998888877999999999999999542
Q ss_pred CCccccccceeeecCCCCC-CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 343 GAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 343 g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
| ...+...|+.++.. +.++... ....++|++||+.|+|.+...+...|+.+...
T Consensus 348 g----~~~i~~~~~~~~~~~~~lt~~~---------------------~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~ 402 (425)
T COG0823 348 G----QWDIDKNDLASGGKIRILTSTY---------------------LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLD 402 (425)
T ss_pred C----ceeeEEeccCCCCcEEEccccc---------------------cCCCCCcCCCCceEEEeccCCCCceEEEeecc
Confidence 2 26788888877663 2222221 23578899999999999887777888888874
Q ss_pred CCcEEEec
Q 004141 422 SGELLRIT 429 (771)
Q Consensus 422 tg~~~~l~ 429 (771)
+.....+.
T Consensus 403 g~~~~~~~ 410 (425)
T COG0823 403 GRVSRPLP 410 (425)
T ss_pred ceeEEEEe
Confidence 43333443
No 30
>PRK10566 esterase; Provisional
Probab=99.87 E-value=8.2e-21 Score=192.09 Aligned_cols=230 Identities=17% Similarity=0.171 Sum_probs=150.2
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCC-ChhhhhcCCCCc--cccchh
Q 004141 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF-GEEALQSLPGKV--GSQDVN 598 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~-g~~~~~~~~~~~--~~~~~~ 598 (771)
..+.+.|.+ ...++.|+||++||.+.. ...+...++.|+++||.|+++|+||.+.. +..........+ .....+
T Consensus 13 ~~~~~~p~~-~~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~ 89 (249)
T PRK10566 13 EVLHAFPAG-QRDTPLPTVFFYHGFTSS--KLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQ 89 (249)
T ss_pred ceEEEcCCC-CCCCCCCEEEEeCCCCcc--cchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHHH
Confidence 345666753 124567999999997655 33577788899999999999999994321 000000000000 112357
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecC-CccchhhhhcCCCCCcchhhhhccCCCCc
Q 004141 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
|+.++++++.+++.++.++|+++|||+||++++.++.++|+...++++.. +... ...... .+ ..... ...
T Consensus 90 ~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~-----~~~~~-~~~ 160 (249)
T PRK10566 90 EFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFT--SLARTL-FP-----PLIPE-TAA 160 (249)
T ss_pred HHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHH--HHHHHh-cc-----ccccc-ccc
Confidence 78888899888877899999999999999999999998887544433322 2111 110000 00 00000 000
Q ss_pred cCCCCCChhhHHHHhhcCcccccCCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC--EEEEEeCCCCccCCCCCC
Q 004141 678 SFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVE--TKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~~ 754 (771)
... ........+...++...+.++ ++|+|++||++|.++|++++++++++++.+|.+ +++.++++++|.+.
T Consensus 161 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~---- 234 (249)
T PRK10566 161 QQA--EFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT---- 234 (249)
T ss_pred cHH--HHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC----
Confidence 000 000111122334454556666 699999999999999999999999999998864 78889999999874
Q ss_pred hHHHHHHHHHHHHHhh
Q 004141 755 DFESFLNIGLWFKKYC 770 (771)
Q Consensus 755 ~~~~~~~i~~fl~~~L 770 (771)
.+.+..+.+||+++|
T Consensus 235 -~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 235 -PEALDAGVAFFRQHL 249 (249)
T ss_pred -HHHHHHHHHHHHhhC
Confidence 367899999999876
No 31
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.87 E-value=5e-21 Score=183.60 Aligned_cols=250 Identities=15% Similarity=0.186 Sum_probs=172.1
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+.+..|..+....+.|.. ..+++.+|+++||.+... ...|...+..|+..||.|+++|++| +|.+..-...-.
T Consensus 31 ~~~n~rG~~lft~~W~p~~--~~~pr~lv~~~HG~g~~~-s~~~~~~a~~l~~~g~~v~a~D~~G---hG~SdGl~~yi~ 104 (313)
T KOG1455|consen 31 FFTNPRGAKLFTQSWLPLS--GTEPRGLVFLCHGYGEHS-SWRYQSTAKRLAKSGFAVYAIDYEG---HGRSDGLHAYVP 104 (313)
T ss_pred eEEcCCCCEeEEEecccCC--CCCCceEEEEEcCCcccc-hhhHHHHHHHHHhCCCeEEEeeccC---CCcCCCCcccCC
Confidence 3456678899999999963 347788999999965432 3467778999999999999999999 554431111111
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh------------cC
Q 004141 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------------GT 659 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~------------~~ 659 (771)
-...-++|+...++.+..+.....-..+++||||||.+++.++.++|..+.++|+.+|.+-...-. -.
T Consensus 105 ~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~ 184 (313)
T KOG1455|consen 105 SFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTLLS 184 (313)
T ss_pred cHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHHHH
Confidence 112337888888888777654455679999999999999999999999999999999977542111 01
Q ss_pred CCCCcchhhhhccC---------------CCCccCCCCCChhhHHHHhhc--CcccccCCCCCcEEEEeeCCCCccCcHH
Q 004141 660 TDIPDWCYVESYGS---------------KGKDSFTESPSVEDLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVPVSN 722 (771)
Q Consensus 660 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~--sp~~~~~~i~~P~lii~G~~D~~vp~~~ 722 (771)
.-+|.|.....-.. .....+.+.|.......+.+. .-..++.++..|+||+||+.|.+..+.-
T Consensus 185 ~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~dD~VTDp~~ 264 (313)
T KOG1455|consen 185 KLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTDDKVTDPKV 264 (313)
T ss_pred HhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCCCcccCcHH
Confidence 11233331111000 000011111211111111111 1224578899999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCccCC---CCCChHHHHHHHHHHHHHh
Q 004141 723 GLQYARALREKGVETKVIVFPNDVHGIE---RPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 723 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~fl~~~ 769 (771)
+++||+..... +.++.+|||+-|.+. .+++...++.+|++||+++
T Consensus 265 Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 265 SKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred HHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 99999988765 467889999999987 3666778899999999875
No 32
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.87 E-value=1.5e-20 Score=198.45 Aligned_cols=246 Identities=15% Similarity=0.224 Sum_probs=158.0
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...+|.++++..+.|.+ ....+++||++||.+... ...+...+..|+++||.|+++|+|| +|.+.........
T Consensus 37 ~~~~dg~~l~~~~~~~~~--~~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rG---hG~S~~~~~~~~~ 110 (330)
T PLN02298 37 FTSPRGLSLFTRSWLPSS--SSPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEG---HGRSEGLRAYVPN 110 (330)
T ss_pred EEcCCCCEEEEEEEecCC--CCCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCC---CCCCCCccccCCC
Confidence 344578999998888753 224578999999975432 2244556677889999999999999 4544211110011
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcch------
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC------ 666 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~------ 666 (771)
.....+|+.++++++......+..+++|+||||||.+++.++.++|++++++|+.+|......... +.|.
T Consensus 111 ~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~----~~~~~~~~~~ 186 (330)
T PLN02298 111 VDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIR----PPWPIPQILT 186 (330)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccC----CchHHHHHHH
Confidence 122367888999988765334456799999999999999999999999999999998754321100 0000
Q ss_pred hhhhccCC--------CCc-----------------cCCCCCChhhHHHHhhc--CcccccCCCCCcEEEEeeCCCCccC
Q 004141 667 YVESYGSK--------GKD-----------------SFTESPSVEDLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 667 ~~~~~~~~--------~~~-----------------~~~~~~~~~~~~~~~~~--sp~~~~~~i~~P~lii~G~~D~~vp 719 (771)
....+... ... .+...+........... .....+.++++|+||+||++|.++|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~ivp 266 (330)
T PLN02298 187 FVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHGSADVVTD 266 (330)
T ss_pred HHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEecCCCCCCC
Confidence 00000000 000 00000000000000000 0123456789999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCC---hHHHHHHHHHHHHHhh
Q 004141 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQS---DFESFLNIGLWFKKYC 770 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~---~~~~~~~i~~fl~~~L 770 (771)
++.++.+++.+... ..+++++++++|.+...+. ...+...+.+||++++
T Consensus 267 ~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~ 318 (330)
T PLN02298 267 PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERC 318 (330)
T ss_pred HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999998887542 3688899999998764332 2457788999999876
No 33
>PHA02857 monoglyceride lipase; Provisional
Probab=99.87 E-value=8e-21 Score=195.41 Aligned_cols=243 Identities=16% Similarity=0.188 Sum_probs=158.7
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...+|..+.+.+|.|. ..+.++|+++||.+.. ...|...+..|++.||.|+++|+|| +|.+.........
T Consensus 5 ~~~~~g~~l~~~~~~~~----~~~~~~v~llHG~~~~--~~~~~~~~~~l~~~g~~via~D~~G---~G~S~~~~~~~~~ 75 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPI----TYPKALVFISHGAGEH--SGRYEELAENISSLGILVFSHDHIG---HGRSNGEKMMIDD 75 (276)
T ss_pred eecCCCCEEEEEeccCC----CCCCEEEEEeCCCccc--cchHHHHHHHHHhCCCEEEEccCCC---CCCCCCccCCcCC
Confidence 34568899999999884 2456889999997654 5578888999999999999999999 5544221111011
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh-------------hcC
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------------VGT 659 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~-------------~~~ 659 (771)
....++|+...++++.+.. ...+++|+||||||.+++.++.++|++++++|+.+|....... ...
T Consensus 76 ~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 76 FGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 1123567777777765542 3467999999999999999999999999999999997542110 000
Q ss_pred CCC-CcchhhhhccCCC--CccCCCCC-------ChhhHHHHhh--cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHH
Q 004141 660 TDI-PDWCYVESYGSKG--KDSFTESP-------SVEDLTRFHS--KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727 (771)
Q Consensus 660 ~~~-~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~--~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~ 727 (771)
... ..+. ........ ...+...+ .......... ......+.++++|+|+++|++|.++|++.+.+++
T Consensus 154 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~ 232 (276)
T PHA02857 154 NKIVGKLC-PESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFM 232 (276)
T ss_pred CCccCCCC-HhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHH
Confidence 000 0000 00000000 00000000 0000000000 0112346788999999999999999999999988
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCCCC--hHHHHHHHHHHHHHhh
Q 004141 728 RALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 770 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~fl~~~L 770 (771)
+.+.. ++++.++++++|.+..+.. ..++++.+.+||+++.
T Consensus 233 ~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 233 QHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred HHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 87643 4789999999998876543 6789999999998764
No 34
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.86 E-value=2.2e-20 Score=198.23 Aligned_cols=249 Identities=16% Similarity=0.187 Sum_probs=156.9
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
..+.+|.++.+..+.|. .....|+||++||.+... ...|...+..|+++||.|+++|+|| +|.+.........
T Consensus 66 ~~~~~g~~l~~~~~~p~---~~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G---~G~S~~~~~~~~~ 138 (349)
T PLN02385 66 EVNSRGVEIFSKSWLPE---NSRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPG---FGLSEGLHGYIPS 138 (349)
T ss_pred EEcCCCCEEEEEEEecC---CCCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCC---CCCCCCCCCCcCC
Confidence 34567899999999886 234679999999965542 1124567788888999999999999 5544211000001
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC------------C
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT------------T 660 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~------------~ 660 (771)
....++|+.+.++.+..+...+..+++|+||||||.+++.++.++|++++++|+.+|.......... .
T Consensus 139 ~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T PLN02385 139 FDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVLQILILLAN 218 (349)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHHHHHHHHHH
Confidence 1122566777777765543344568999999999999999999999999999999986532110000 0
Q ss_pred CCCcchhh------hh-ccCC--------CCccCCCCCChh-hHHHHhh-cCcccccCCCCCcEEEEeeCCCCccCcHHH
Q 004141 661 DIPDWCYV------ES-YGSK--------GKDSFTESPSVE-DLTRFHS-KSPISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 661 ~~~~~~~~------~~-~~~~--------~~~~~~~~~~~~-~~~~~~~-~sp~~~~~~i~~P~lii~G~~D~~vp~~~~ 723 (771)
..+.+... .. +... ....+...+... ....+.. ......+.++++|+|++||++|.++|++.+
T Consensus 219 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~D~vv~~~~~ 298 (349)
T PLN02385 219 LLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEADKVTDPSVS 298 (349)
T ss_pred HCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCCCCccChHHH
Confidence 00000000 00 0000 000000000000 0111111 111234678899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh---HHHHHHHHHHHHHhh
Q 004141 724 LQYARALREKGVETKVIVFPNDVHGIERPQSD---FESFLNIGLWFKKYC 770 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~---~~~~~~i~~fl~~~L 770 (771)
+.+++.+... +.+++++++++|.+...+.. ..++..+++||++++
T Consensus 299 ~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 299 KFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred HHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 9998877532 36888999999998754432 347889999999875
No 35
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=2e-19 Score=195.62 Aligned_cols=232 Identities=18% Similarity=0.170 Sum_probs=164.9
Q ss_pred CCeEEEEecCCCC--CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC
Q 004141 110 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 186 (771)
Q Consensus 110 G~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 186 (771)
+++|||++...++ ...+++.+ ++.+.+.++...... ..+.|||||++|+|++...
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v----------~~p~wSPDG~~la~~s~~~------------ 225 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPL----------MSPAWSPDGSKLAYVSFEN------------ 225 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCcc----------ccceEcCCCCEEEEEEecC------------
Confidence 6889999875432 24566555 444544455433223 5899999999999986532
Q ss_pred CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCc
Q 004141 187 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~ 266 (771)
...+||++|+.+++.+.+. ........++|||||+. |+|++...
T Consensus 226 -----------------------------~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPDG~~----La~~~~~~- 269 (429)
T PRK01742 226 -----------------------------KKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPDGSR----LAFASSKD- 269 (429)
T ss_pred -----------------------------CCcEEEEEeCCCCceEEEe--cCCCccCceeECCCCCE----EEEEEecC-
Confidence 3478999999999887773 33333457899999999 99986322
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004141 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
...+||.+|+ +++..++|+.+.....+|.|||||++|+|.+.+. |
T Consensus 270 -----------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~----g--- 314 (429)
T PRK01742 270 -----------GVLNIYVMGA-----------------NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRS----G--- 314 (429)
T ss_pred -----------CcEEEEEEEC-----------------CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCC----C---
Confidence 2237999998 7788899998777788999999999999998764 2
Q ss_pred ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004141 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 347 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
..+||.++..++....++. . . ..+.|||||+.|++... ..++.+|+.+|+.+
T Consensus 315 -~~~I~~~~~~~~~~~~l~~-----------------~-----~-~~~~~SpDG~~ia~~~~----~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 315 -SPQVYRMSASGGGASLVGG-----------------R-----G-YSAQISADGKTLVMING----DNVVKQDLTSGSTE 366 (429)
T ss_pred -CceEEEEECCCCCeEEecC-----------------C-----C-CCccCCCCCCEEEEEcC----CCEEEEECCCCCeE
Confidence 4689999876654322210 0 1 24579999999988754 35788999999988
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004141 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~ 464 (771)
.++... ....+.|+|||+.|++..... .-..+++.+
T Consensus 367 ~lt~~~-~~~~~~~sPdG~~i~~~s~~g-~~~~l~~~~ 402 (429)
T PRK01742 367 VLSSTF-LDESPSISPNGIMIIYSSTQG-LGKVLQLVS 402 (429)
T ss_pred EecCCC-CCCCceECCCCCEEEEEEcCC-CceEEEEEE
Confidence 887543 234578999999999887533 334445444
No 36
>PLN02442 S-formylglutathione hydrolase
Probab=99.84 E-value=1.7e-19 Score=184.14 Aligned_cols=233 Identities=15% Similarity=0.137 Sum_probs=150.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEECCCCCC--CC----------C
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSL--GF----------G 581 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vv~~d~rG~~--~~----------g 581 (771)
-|..+.+.+|.|+. ...+++|+|+++||++.... .|. .....++..||.|++||..+.+ .. +
T Consensus 28 l~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~~--~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~ 104 (283)
T PLN02442 28 LGCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTDE--NFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVG 104 (283)
T ss_pred cCCceEEEEEcCCc-ccCCCCCEEEEecCCCcChH--HHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCC
Confidence 35678889999983 34568999999999765432 222 2345667889999999975422 00 1
Q ss_pred hhhh-hcCCCCcc-----ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh
Q 004141 582 EEAL-QSLPGKVG-----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 582 ~~~~-~~~~~~~~-----~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~ 655 (771)
..+. +.....+. ....+++...++.... .++.++++|+|+||||++++.++.++|++|+++++.+|+.+...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~ 182 (283)
T PLN02442 105 AGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANPIN 182 (283)
T ss_pred cceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCccc
Confidence 1100 00000110 0112233333332222 26889999999999999999999999999999999999876431
Q ss_pred hhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcH-HHHHHHHHHHhCC
Q 004141 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKG 734 (771)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~-~~~~~~~~l~~~g 734 (771)
. .+.. ..+ ..+.+.+ ......+...+++..+...++|+|++||++|++++.. +++.+++++++.|
T Consensus 183 ~-------~~~~-~~~-----~~~~g~~-~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g 248 (283)
T PLN02442 183 C-------PWGQ-KAF-----TNYLGSD-KADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEACKEAG 248 (283)
T ss_pred C-------chhh-HHH-----HHHcCCC-hhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHHHHcC
Confidence 1 0100 000 0111111 2334444455556666677899999999999999863 5789999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
.++++.++|+++|.+. ....++.+.+.|..+++|
T Consensus 249 ~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 249 APVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred CCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 9999999999999765 223445555666666654
No 37
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.84 E-value=8.3e-19 Score=191.94 Aligned_cols=243 Identities=15% Similarity=0.159 Sum_probs=179.2
Q ss_pred CCCCCeEEEEecCC-CCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004141 107 SPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 107 SPdG~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
.+.+.+++|++... ++...++.++ +++..++++...... ..+.|||||++|+|.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~~Spdg~~la~~~~~~---------- 211 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPI----------LSPAWSPDGQKLAYVSFES---------- 211 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCce----------ecccCCCCCCEEEEEEcCC----------
Confidence 44678899998764 3456677777 556667776643323 4889999999999985432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004141 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+...|+++|+.+++.+.+ .........+.|||||+. |+|+...
T Consensus 212 -------------------------------~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg~~----l~~~~~~ 254 (417)
T TIGR02800 212 -------------------------------GKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDGSK----LAVSLSK 254 (417)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCE----EEEEECC
Confidence 236899999999988777 333334556899999999 9987632
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004141 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
+...+||.+++ .++..++++........|.|||||++|+|.+.+. |
T Consensus 255 ------------~~~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~----g- 300 (417)
T TIGR02800 255 ------------DGNPDIYVMDL-----------------DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG----G- 300 (417)
T ss_pred ------------CCCccEEEEEC-----------------CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCC----C-
Confidence 12348999998 7778888887666667899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... .....+.|+|||+.|++.....+..+|+.+++.++.
T Consensus 301 ---~~~iy~~d~~~~~~~~l~~~~--------------------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 301 ---SPQIYMMDADGGEVRRLTFRG--------------------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred ---CceEEEEECCCCCEEEeecCC--------------------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 358999998876654332211 023467899999999998876677789999999988
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004141 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 465 (771)
.+.++.... ...+.|++||+.|++.+..... ..+++.+.
T Consensus 358 ~~~l~~~~~-~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~ 396 (417)
T TIGR02800 358 ERVLTDTGL-DESPSFAPNGRMILYATTRGGR-GVLGLVST 396 (417)
T ss_pred eEEccCCCC-CCCceECCCCCEEEEEEeCCCc-EEEEEEEC
Confidence 888775433 3456899999999998876554 56776654
No 38
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.83 E-value=2.2e-19 Score=192.36 Aligned_cols=232 Identities=15% Similarity=0.154 Sum_probs=149.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++.|+++.|+ ..++.|+||++||. .+.....|...++.|+++||+|+++|+||.+ .+... . . .
T Consensus 175 ~~~g~~l~g~l~~P~---~~~~~P~Vli~gG~-~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G---~s~~~--~--~-~ 242 (414)
T PRK05077 175 IPGGGPITGFLHLPK---GDGPFPTVLVCGGL-DSLQTDYYRLFRDYLAPRGIAMLTIDMPSVG---FSSKW--K--L-T 242 (414)
T ss_pred cCCCcEEEEEEEECC---CCCCccEEEEeCCc-ccchhhhHHHHHHHHHhCCCEEEEECCCCCC---CCCCC--C--c-c
Confidence 345678999999997 34678887766553 3221234666778899999999999999944 33111 0 0 1
Q ss_pred cch-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-hh-cCCCCCcchhhhhc
Q 004141 595 QDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MV-GTTDIPDWCYVESY 671 (771)
Q Consensus 595 ~~~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-~~-~~~~~~~~~~~~~~ 671 (771)
.+. ....++++++...+.+|.+||+++|+|+||++++.++..+|++++++|+.+|+++... .. .....+.. +...+
T Consensus 243 ~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~p~~-~~~~l 321 (414)
T PRK05077 243 QDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQVPEM-YLDVL 321 (414)
T ss_pred ccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhchHH-HHHHH
Confidence 122 2234678888888888999999999999999999999988999999999998864210 00 00000100 00000
Q ss_pred cCCCCccCCC-CCChhh-HHHHhhcCcc--cc-cCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004141 672 GSKGKDSFTE-SPSVED-LTRFHSKSPI--SH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 746 (771)
Q Consensus 672 ~~~~~~~~~~-~~~~~~-~~~~~~~sp~--~~-~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~ 746 (771)
.. .+.. ....+. ...+...+.. .. ..++++|+|+++|++|+++|+++++.+.+... +.+++++|++
T Consensus 322 a~----~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~----~~~l~~i~~~- 392 (414)
T PRK05077 322 AS----RLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSA----DGKLLEIPFK- 392 (414)
T ss_pred HH----HhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCC----CCeEEEccCC-
Confidence 00 0000 001111 1111111211 11 25689999999999999999999887765543 3688899986
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 747 HGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
|.+ +...+++..+.+||+++|.
T Consensus 393 ~~~---e~~~~~~~~i~~wL~~~l~ 414 (414)
T PRK05077 393 PVY---RNFDKALQEISDWLEDRLC 414 (414)
T ss_pred Ccc---CCHHHHHHHHHHHHHHHhC
Confidence 322 3556889999999999874
No 39
>PRK10749 lysophospholipase L2; Provisional
Probab=99.83 E-value=6.9e-19 Score=184.98 Aligned_cols=248 Identities=19% Similarity=0.229 Sum_probs=154.4
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+...+|.++++..+.|. .+.++||++||.... ...|...+..|+++||.|+++|+||.|.++........+.
T Consensus 34 ~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~~--~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~ 106 (330)
T PRK10749 34 EFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIES--YVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGH 106 (330)
T ss_pred EEEcCCCCEEEEEEccCC-----CCCcEEEEECCccch--HHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCc
Confidence 445667888988887653 234789999996543 3356677778889999999999999544322110000001
Q ss_pred c--cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh------------h
Q 004141 592 V--GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM------------V 657 (771)
Q Consensus 592 ~--~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~------------~ 657 (771)
. ...-++|+.++++.+... .+..++.++||||||.+++.++.++|+.++++|+.+|....... .
T Consensus 107 ~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~ 184 (330)
T PRK10749 107 VERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRILNWA 184 (330)
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHHHHHH
Confidence 1 111245565666555443 24578999999999999999999999999999999986532100 0
Q ss_pred -cCCCC--------CcchhhhhccCCC-----------CccCCCCC-------ChhhHHHHhhc--CcccccCCCCCcEE
Q 004141 658 -GTTDI--------PDWCYVESYGSKG-----------KDSFTESP-------SVEDLTRFHSK--SPISHISKVKTPTI 708 (771)
Q Consensus 658 -~~~~~--------~~~~~~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~~--sp~~~~~~i~~P~l 708 (771)
..... ..|.... +.... ...+...+ ........... .....+.++++|+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~L 263 (330)
T PRK10749 185 EGHPRIRDGYAIGTGRWRPLP-FAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLAGAGDITTPLL 263 (330)
T ss_pred HHhcCCCCcCCCCCCCCCCCC-cCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHhhccCCCCCEE
Confidence 00000 0000000 00000 00000000 00000000000 11234577899999
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCC---CEEEEEeCCCCccCCCCCC--hHHHHHHHHHHHHHh
Q 004141 709 FLLGAQDLRVPVSNGLQYARALREKGV---ETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKY 769 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~fl~~~ 769 (771)
+++|++|.+++++.++.+++.++..+. +++++++|+++|.+..+.. ...+++.|++||+++
T Consensus 264 ii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 264 LLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred EEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999987653 4689999999999875544 567889999999875
No 40
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.83 E-value=5.8e-20 Score=181.20 Aligned_cols=204 Identities=23% Similarity=0.311 Sum_probs=141.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCC-CChhhh---hcCC---CCcc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG-FGEEAL---QSLP---GKVG 593 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~-~g~~~~---~~~~---~~~~ 593 (771)
+.+++..|.+ .++.|.||++|+..+. .......++.|+++||.|++||+-+..+ ...... .... ....
T Consensus 1 ~~ay~~~P~~---~~~~~~Vvv~~d~~G~--~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (218)
T PF01738_consen 1 IDAYVARPEG---GGPRPAVVVIHDIFGL--NPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRP 75 (218)
T ss_dssp EEEEEEEETT---SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSH
T ss_pred CeEEEEeCCC---CCCCCEEEEEcCCCCC--chHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhH
Confidence 4688999984 3788999999996543 2345567889999999999999764332 001100 0000 0001
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
.....|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++++|...|...
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------------- 133 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------------- 133 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------------
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------------
Confidence 12357788999999998778889999999999999999998876 67899988777100
Q ss_pred CCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004141 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
+ ..+.....++++|+|+++|++|+.++.+....+.+.|++++.++++.+|||++|+|....
T Consensus 134 ---------~----------~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 134 ---------P----------PPPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp ---------G----------GGHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred ---------C----------CcchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 0 011233456789999999999999999999999999999999999999999999987533
Q ss_pred -------ChHHHHHHHHHHHHHhh
Q 004141 754 -------SDFESFLNIGLWFKKYC 770 (771)
Q Consensus 754 -------~~~~~~~~i~~fl~~~L 770 (771)
...+.++++++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 34678889999999987
No 41
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.81 E-value=1.4e-18 Score=177.16 Aligned_cols=233 Identities=11% Similarity=0.051 Sum_probs=150.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHH-HHCCcEEEEECC--CCCCCCCh--hhh------
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNY--RGSLGFGE--EAL------ 585 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~Vv~~d~--rG~~~~g~--~~~------ 585 (771)
.+.++.+.+|.|++.. .++.|+|+++||.+.+.....+...+..+ ++.||.|++||+ ||.+..+. .|.
T Consensus 23 ~~~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~ 101 (275)
T TIGR02821 23 CGVPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAG 101 (275)
T ss_pred cCCceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCcc
Confidence 4667888999998642 45689999999977553221112223344 567999999997 55332111 110
Q ss_pred ---hcCCCCcc--ccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC
Q 004141 586 ---QSLPGKVG--SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 659 (771)
Q Consensus 586 ---~~~~~~~~--~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~ 659 (771)
+....... ......+...+..+++. ..++.++++|+|+||||++++.++.++|+.++++++.+|+.+....
T Consensus 102 ~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~--- 178 (275)
T TIGR02821 102 FYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAPSRC--- 178 (275)
T ss_pred ccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCcccC---
Confidence 00000000 01122333444444443 4478899999999999999999999999999999999998764211
Q ss_pred CCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccC--CCCCcEEEEeeCCCCccCc-HHHHHHHHHHHhCCCC
Q 004141 660 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS--KVKTPTIFLLGAQDLRVPV-SNGLQYARALREKGVE 736 (771)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~--~i~~P~lii~G~~D~~vp~-~~~~~~~~~l~~~g~~ 736 (771)
....... .. +...+. ..+...+|...+. ...+|+++.||+.|+.++. .+...+.++|+++|++
T Consensus 179 -~~~~~~~-~~--------~l~~~~----~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~ 244 (275)
T TIGR02821 179 -PWGQKAF-SA--------YLGADE----AAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAAGQA 244 (275)
T ss_pred -cchHHHH-HH--------Hhcccc----cchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHcCCC
Confidence 0000001 11 111111 1122334443333 2468999999999999998 6888999999999999
Q ss_pred EEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 737 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 737 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+++..+|+++|.+.. ....+.+.++|+.+++
T Consensus 245 v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 245 LTLRRQAGYDHSYYF---IASFIADHLRHHAERL 275 (275)
T ss_pred eEEEEeCCCCccchh---HHHhHHHHHHHHHhhC
Confidence 999999999998763 2356778888887764
No 42
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.81 E-value=2.9e-19 Score=162.61 Aligned_cols=211 Identities=16% Similarity=0.193 Sum_probs=149.7
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
..+|+++||..++ ......+.++|.++||.|.+|.|+|.+-....+.+..+..| ++|+.++.++|.+.+ -+
T Consensus 15 ~~AVLllHGFTGt--~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~g---y~ 85 (243)
T COG1647 15 NRAVLLLHGFTGT--PRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAG---YD 85 (243)
T ss_pred CEEEEEEeccCCC--cHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcC---CC
Confidence 3789999996655 55778889999999999999999995544444433333222 789999999999775 36
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC-CCCCcchhhhhccCCCCccCCCCCChhhHHHHhhc-
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK- 694 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 694 (771)
.|+++|.||||.+++.++.++| .+++|..|+..+....... ...-.| ... ...+.+.........+...
T Consensus 86 eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y--~~~-----~kk~e~k~~e~~~~e~~~~~ 156 (243)
T COG1647 86 EIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEY--FRN-----AKKYEGKDQEQIDKEMKSYK 156 (243)
T ss_pred eEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHH--HHH-----hhhccCCCHHHHHHHHHHhh
Confidence 8999999999999999999988 6777777765543211000 000000 011 1111111111111111111
Q ss_pred ---------------CcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHH
Q 004141 695 ---------------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 759 (771)
Q Consensus 695 ---------------sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 759 (771)
.....++.|..|+|++.|.+|+.||.+.+..+++.... .+.++.++++.||.+.....+.++.
T Consensus 157 ~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~Erd~v~ 234 (243)
T COG1647 157 DTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES--DDKELKWLEGSGHVITLDKERDQVE 234 (243)
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC--CcceeEEEccCCceeecchhHHHHH
Confidence 12245778899999999999999999999999988865 3578999999999999888888999
Q ss_pred HHHHHHHH
Q 004141 760 LNIGLWFK 767 (771)
Q Consensus 760 ~~i~~fl~ 767 (771)
+.++.||+
T Consensus 235 e~V~~FL~ 242 (243)
T COG1647 235 EDVITFLE 242 (243)
T ss_pred HHHHHHhh
Confidence 99999996
No 43
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.81 E-value=1.2e-18 Score=184.98 Aligned_cols=246 Identities=13% Similarity=0.122 Sum_probs=155.2
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...++..+.+..+.|. ...+.|+||++||.+.. ...|...+..|+++||.|+++|+||. |.+.........
T Consensus 115 ~~~~~~~~l~~~~~~p~---~~~~~~~Vl~lHG~~~~--~~~~~~~a~~L~~~Gy~V~~~D~rGh---G~S~~~~~~~~~ 186 (395)
T PLN02652 115 FYGARRNALFCRSWAPA---AGEMRGILIIIHGLNEH--SGRYLHFAKQLTSCGFGVYAMDWIGH---GGSDGLHGYVPS 186 (395)
T ss_pred EECCCCCEEEEEEecCC---CCCCceEEEEECCchHH--HHHHHHHHHHHHHCCCEEEEeCCCCC---CCCCCCCCCCcC
Confidence 44556677888888885 34456899999997654 33567788899999999999999994 443211100011
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC---ceeEEEecCCccchhhhhc---------CC
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVG---------TT 660 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~p~~~~~~~~~---------~~ 660 (771)
.....+|+.++++++.... +..+++|+||||||.+++.++. +|+ .++++|+.+|...+..... ..
T Consensus 187 ~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~~~~l~~~ 263 (395)
T PLN02652 187 LDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGAVAPIFSL 263 (395)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHHHHHHHHH
Confidence 1122578888888887552 2357999999999999997764 554 7899999999754321000 00
Q ss_pred CCCcchhhhh--ccCCC-------CccCC------CCCChhhHHHHhhcC--cccccCCCCCcEEEEeeCCCCccCcHHH
Q 004141 661 DIPDWCYVES--YGSKG-------KDSFT------ESPSVEDLTRFHSKS--PISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 661 ~~~~~~~~~~--~~~~~-------~~~~~------~~~~~~~~~~~~~~s--p~~~~~~i~~P~lii~G~~D~~vp~~~~ 723 (771)
-.+.+.+... .+... ...+. +.............. ....+.++++|+|++||++|.++|++.+
T Consensus 264 ~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D~vvp~~~a 343 (395)
T PLN02652 264 VAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTADRVTDPLAS 343 (395)
T ss_pred hCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCCCCCHHHH
Confidence 0000000000 00000 00000 000000000000000 1234577899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 724 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+++++.+... ..++.++++++|.+.......++++.+.+||+.+++
T Consensus 344 ~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 344 QDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred HHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9998886542 367788999999987666677899999999998763
No 44
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.80 E-value=3.8e-18 Score=180.70 Aligned_cols=206 Identities=18% Similarity=0.229 Sum_probs=160.8
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
..+.|||||++|+|...... +.+++|++|+++++..++
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~----------------------------------------~~~~i~~~~l~~g~~~~i-- 233 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELG----------------------------------------GCPRIYYLDLNTGKRPVI-- 233 (425)
T ss_pred eccccCcCCCceEEEEEecC----------------------------------------CCceEEEEeccCCcccee--
Confidence 47899999999999854321 227899999999988877
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
.........+.|||||++ |+|+..+ +...+||.+|+ .++...+|+..
T Consensus 234 ~~~~g~~~~P~fspDG~~----l~f~~~r------------dg~~~iy~~dl-----------------~~~~~~~Lt~~ 280 (425)
T COG0823 234 LNFNGNNGAPAFSPDGSK----LAFSSSR------------DGSPDIYLMDL-----------------DGKNLPRLTNG 280 (425)
T ss_pred eccCCccCCccCCCCCCE----EEEEECC------------CCCccEEEEcC-----------------CCCcceecccC
Confidence 555566778999999999 9999843 34559999999 77778889999
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
.+...+|.|||||++|||.+.+. | ..+||+++++++..+++|.... ....+.
T Consensus 281 ~gi~~~Ps~spdG~~ivf~Sdr~----G----~p~I~~~~~~g~~~~riT~~~~--------------------~~~~p~ 332 (425)
T COG0823 281 FGINTSPSWSPDGSKIVFTSDRG----G----RPQIYLYDLEGSQVTRLTFSGG--------------------GNSNPV 332 (425)
T ss_pred CccccCccCCCCCCEEEEEeCCC----C----CcceEEECCCCCceeEeeccCC--------------------CCcCcc
Confidence 88888999999999999999885 3 4699999999988877665431 122678
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCc-EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
|||||++|+|....++...+...++.++. .+.++.... ...+.++++++.+++..... .-+.++.....
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~-~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~ 402 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL-NESPSWAPNGRMIMFSSGQG-GGSVLSLVSLD 402 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc-CCCCCcCCCCceEEEeccCC-CCceEEEeecc
Confidence 99999999999865566678888887777 555554443 34578899999999988777 34446655543
No 45
>PRK10162 acetyl esterase; Provisional
Probab=99.80 E-value=2.9e-18 Score=178.30 Aligned_cols=231 Identities=13% Similarity=0.121 Sum_probs=154.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.+.+.+|.|.. ...|+||++|||++.... ..+...+..|+. .|+.|+++|||.++++ .....+
T Consensus 68 ~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~-----------~~p~~~ 132 (318)
T PRK10162 68 QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA-----------RFPQAI 132 (318)
T ss_pred ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC-----------CCCCcH
Confidence 58889999962 246999999999876543 345567777776 6999999999987653 122358
Q ss_pred hhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC------CCceeEEEecCCccchhhhhcCC-CCCcch-
Q 004141 598 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTT-DIPDWC- 666 (771)
Q Consensus 598 ~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~~~v~~~p~~~~~~~~~~~-~~~~~~- 666 (771)
+|+.++++|+.++ ..+|++||+|+|+|+||.+++.++.+. +..++++++.+|+.+........ ....+.
T Consensus 133 ~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~~~~s~~~~~~~~~~ 212 (318)
T PRK10162 133 EEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSVSRRLLGGVWDG 212 (318)
T ss_pred HHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCCCChhHHHhCCCccc
Confidence 9999999998764 347899999999999999999988642 35688999999987642110000 000000
Q ss_pred hh-hhccCCCCccCCCCCChhhHHHHhhcCccc-ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 667 YV-ESYGSKGKDSFTESPSVEDLTRFHSKSPIS-HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 667 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
+. ..+. .....+...+. +.. ....+|.. .+...-+|++|++|+.|+++ .+++.++++|+++|++++++++++
T Consensus 213 l~~~~~~-~~~~~y~~~~~--~~~-~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~L~~aGv~v~~~~~~g 286 (318)
T PRK10162 213 LTQQDLQ-MYEEAYLSNDA--DRE-SPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQTLAAHQQPCEFKLYPG 286 (318)
T ss_pred cCHHHHH-HHHHHhCCCcc--ccC-CcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHHHHHcCCCEEEEEECC
Confidence 00 0000 00000000000 000 00112211 11122379999999999987 689999999999999999999999
Q ss_pred CCccCCCC----CChHHHHHHHHHHHHHhhC
Q 004141 745 DVHGIERP----QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 745 ~~H~~~~~----~~~~~~~~~i~~fl~~~L~ 771 (771)
..|++... +...+.+..+.+||+++|+
T Consensus 287 ~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 287 TLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred CceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 99987632 2245778899999999875
No 46
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=7e-18 Score=165.63 Aligned_cols=207 Identities=21% Similarity=0.268 Sum_probs=160.1
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh----hcCC---C
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL----QSLP---G 590 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~----~~~~---~ 590 (771)
+.++.+++..|+ ...+.|+||++|+..+. .......++.|+.+||.|++||+-+..+-..... .... .
T Consensus 11 ~~~~~~~~a~P~---~~~~~P~VIv~hei~Gl--~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~ 85 (236)
T COG0412 11 DGELPAYLARPA---GAGGFPGVIVLHEIFGL--NPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVE 85 (236)
T ss_pred CceEeEEEecCC---cCCCCCEEEEEecccCC--chHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhc
Confidence 478999999998 44455999999996554 3467778999999999999999754222111110 0000 0
Q ss_pred Cc-cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 591 KV-GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 591 ~~-~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
.. ......|+.+++++|.+++.++.++|+++|+||||.+++.++.+.| .++++++..|..-..
T Consensus 86 ~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~~--------------- 149 (236)
T COG0412 86 RVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIAD--------------- 149 (236)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCCC---------------
Confidence 11 1344789999999999998789999999999999999999998866 789988876642100
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
......++++|+|+.+|+.|..+|......+.+.+.++++.+++.+|+++.|+|
T Consensus 150 --------------------------~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F 203 (236)
T COG0412 150 --------------------------DTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203 (236)
T ss_pred --------------------------cccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccc
Confidence 001145788999999999999999999999999999998899999999999998
Q ss_pred CCCC----------ChHHHHHHHHHHHHHhhC
Q 004141 750 ERPQ----------SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 750 ~~~~----------~~~~~~~~i~~fl~~~L~ 771 (771)
..+. ...+.++++++||+++++
T Consensus 204 ~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 204 ANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred ccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 8542 246788999999999874
No 47
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.79 E-value=4.3e-18 Score=173.67 Aligned_cols=244 Identities=14% Similarity=0.196 Sum_probs=155.1
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+...+|.++....+.+.. .+..+||++||.... ...|...+..|..+||.|+++|.|| +|.+.+ ...+.
T Consensus 13 ~~~~~d~~~~~~~~~~~~~----~~~g~Vvl~HG~~Eh--~~ry~~la~~l~~~G~~V~~~D~RG---hG~S~r-~~rg~ 82 (298)
T COG2267 13 YFTGADGTRLRYRTWAAPE----PPKGVVVLVHGLGEH--SGRYEELADDLAARGFDVYALDLRG---HGRSPR-GQRGH 82 (298)
T ss_pred eeecCCCceEEEEeecCCC----CCCcEEEEecCchHH--HHHHHHHHHHHHhCCCEEEEecCCC---CCCCCC-CCcCC
Confidence 4556678888888887652 233899999997654 4467788999999999999999999 554431 01111
Q ss_pred cc--ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh--hh-c----CCCC
Q 004141 592 VG--SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--MV-G----TTDI 662 (771)
Q Consensus 592 ~~--~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~--~~-~----~~~~ 662 (771)
.. ..-..|+.+.++.+... ....+++|+||||||.+++.++.+++..+.++|+.+|.+.... .. . ....
T Consensus 83 ~~~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~ 160 (298)
T COG2267 83 VDSFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKL 160 (298)
T ss_pred chhHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhccc
Confidence 11 11133444444444332 2356899999999999999999999999999999999887652 10 0 0000
Q ss_pred CcchhhhhccCCC----CccCCCCCChhhHHHHhhcCc-----------------------ccccCCCCCcEEEEeeCCC
Q 004141 663 PDWCYVESYGSKG----KDSFTESPSVEDLTRFHSKSP-----------------------ISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 663 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~sp-----------------------~~~~~~i~~P~lii~G~~D 715 (771)
. ......+.... .-.................+| ......+++|+||++|++|
T Consensus 161 ~-~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll~g~~D 239 (298)
T COG2267 161 L-GRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQGGDD 239 (298)
T ss_pred c-cccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEEEEecCCC
Confidence 0 00000000000 000000000001111111222 1224567899999999999
Q ss_pred CccC-cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh--HHHHHHHHHHHHHhh
Q 004141 716 LRVP-VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD--FESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp-~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~fl~~~L 770 (771)
.+++ .+...++++.+... ++++.+++|+.|.+..+... .++++.+.+||.+++
T Consensus 240 ~vv~~~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 240 RVVDNVEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred ccccCcHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 9999 67766666655432 37899999999998877666 889999999999875
No 48
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.77 E-value=7.4e-18 Score=158.89 Aligned_cols=209 Identities=16% Similarity=0.204 Sum_probs=150.2
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
+..|..+.+..+.|+. ...+++++.||.....+ ........| ...++.|+.+||+|.+.++.. +.+
T Consensus 42 t~rgn~~~~~y~~~~~----~~~~~lly~hGNa~Dlg--q~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~-----psE-- 108 (258)
T KOG1552|consen 42 TSRGNEIVCMYVRPPE----AAHPTLLYSHGNAADLG--QMVELFKELSIFLNCNVVSYDYSGYGRSSGK-----PSE-- 108 (258)
T ss_pred cCCCCEEEEEEEcCcc----ccceEEEEcCCcccchH--HHHHHHHHHhhcccceEEEEecccccccCCC-----ccc--
Confidence 3456677778888752 35699999999643322 111222222 235899999999994443222 111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC-CCCCcchhhhhcc
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWCYVESYG 672 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~-~~~~~~~~~~~~~ 672 (771)
....+|+.++.++|.++.. ..++|+|+|+|+|...++.+|.+.| .+++|+.+|+.+....... .....|+
T Consensus 109 ~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~~~~~------ 179 (258)
T KOG1552|consen 109 RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKTTYCF------ 179 (258)
T ss_pred ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcceEEee------
Confidence 2458999999999999876 7899999999999999999999988 9999999999876544322 1111000
Q ss_pred CCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004141 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
....-+..++.+++|+|++||+.|++++..++.+++++.+.. ++..+..|+||.-..
T Consensus 180 -------------------d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~g~gH~~~~- 236 (258)
T KOG1552|consen 180 -------------------DAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVKGAGHNDIE- 236 (258)
T ss_pred -------------------ccccccCcceeccCCEEEEecccCceecccccHHHHHhcccc---CCCcEEecCCCcccc-
Confidence 001115667788999999999999999999999999998874 777888899997542
Q ss_pred CChHHHHHHHHHHHHHh
Q 004141 753 QSDFESFLNIGLWFKKY 769 (771)
Q Consensus 753 ~~~~~~~~~i~~fl~~~ 769 (771)
...++...+..|+...
T Consensus 237 -~~~~yi~~l~~f~~~~ 252 (258)
T KOG1552|consen 237 -LYPEYIEHLRRFISSV 252 (258)
T ss_pred -cCHHHHHHHHHHHHHh
Confidence 2346777787777654
No 49
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.76 E-value=2.1e-17 Score=169.27 Aligned_cols=241 Identities=18% Similarity=0.187 Sum_probs=151.0
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC---
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL--- 588 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~--- 588 (771)
.+.+-+|.+|.|+++.|++ ..++.|+||.+||.+.. ...+. ....++.+||+|+.+|.||.++...+.....
T Consensus 60 ~f~s~~g~~V~g~l~~P~~--~~~~~Pavv~~hGyg~~--~~~~~-~~~~~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~ 134 (320)
T PF05448_consen 60 SFESFDGSRVYGWLYRPKN--AKGKLPAVVQFHGYGGR--SGDPF-DLLPWAAAGYAVLAMDVRGQGGRSPDYRGSSGGT 134 (320)
T ss_dssp EEEEGGGEEEEEEEEEES---SSSSEEEEEEE--TT----GGGHH-HHHHHHHTT-EEEEE--TTTSSSS-B-SSBSSS-
T ss_pred EEEccCCCEEEEEEEecCC--CCCCcCEEEEecCCCCC--CCCcc-cccccccCCeEEEEecCCCCCCCCCCccccCCCC
Confidence 4556678999999999985 45789999999995543 11222 2335789999999999999764322211100
Q ss_pred ------------CCC-ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc-chh
Q 004141 589 ------------PGK-VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLA 654 (771)
Q Consensus 589 ------------~~~-~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~-~~~ 654 (771)
+.. +....+.|+..++++|.+++.+|++||++.|.|.||.+++.+++..+ +++++++..|.. |..
T Consensus 135 ~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~d~~ 213 (320)
T PF05448_consen 135 LKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLCDFR 213 (320)
T ss_dssp SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSSSHH
T ss_pred CccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCccchh
Confidence 000 01123579999999999999999999999999999999999999865 699888888854 444
Q ss_pred hhhcCCC-CCcchhhhhccCCCCccCCCCCC--hhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004141 655 LMVGTTD-IPDWCYVESYGSKGKDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 655 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
....... ...+.....+.. .....+. .+..+.+...+....+++|++|+++..|-.|+.|||+.....|+++.
T Consensus 214 ~~~~~~~~~~~y~~~~~~~~----~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~ 289 (320)
T PF05448_consen 214 RALELRADEGPYPEIRRYFR----WRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIP 289 (320)
T ss_dssp HHHHHT--STTTHHHHHHHH----HHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--
T ss_pred hhhhcCCccccHHHHHHHHh----ccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccC
Confidence 3322111 111110000000 0000111 12234455667778899999999999999999999999999999886
Q ss_pred hCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
. +.++.+||..+|... ......+.++||.+|
T Consensus 290 ~---~K~l~vyp~~~He~~----~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 290 G---PKELVVYPEYGHEYG----PEFQEDKQLNFLKEH 320 (320)
T ss_dssp S---SEEEEEETT--SSTT----HHHHHHHHHHHHHH-
T ss_pred C---CeeEEeccCcCCCch----hhHHHHHHHHHHhcC
Confidence 5 489999999999764 223367899999875
No 50
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.76 E-value=1.1e-16 Score=182.55 Aligned_cols=209 Identities=14% Similarity=0.173 Sum_probs=148.0
Q ss_pred HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC--CC------------CCeEEEEE
Q 004141 557 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL--AN------------PSKVTVVG 622 (771)
Q Consensus 557 ~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~--~d------------~~ri~l~G 622 (771)
...++|+.+||+|+.+|.||.+++++.+ ...+..+.+|..++|+|+..+.. .| ..||+++|
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg~SeG~~-----~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G 344 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTRGSDGCP-----TTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTG 344 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCCCCCCcC-----ccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEE
Confidence 3457899999999999999987765542 22445678999999999985421 12 57999999
Q ss_pred cChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCC----cch------hhhhccCC--CCccCC----------
Q 004141 623 GSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP----DWC------YVESYGSK--GKDSFT---------- 680 (771)
Q Consensus 623 ~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~----~~~------~~~~~~~~--~~~~~~---------- 680 (771)
.||||++++.+|...|+.++++|..+++.++..++...... .|. +....... ....+.
T Consensus 345 ~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~ 424 (767)
T PRK05371 345 KSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLL 424 (767)
T ss_pred EcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHH
Confidence 99999999999998889999999999988765433211100 010 00000000 000000
Q ss_pred -------CCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004141 681 -------ESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 681 -------~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
........+.|...++...++++++|+|++||..|.++++.++.+++++|++.+++.++++.++ +|......
T Consensus 425 ~~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~ 503 (767)
T PRK05371 425 AELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNW 503 (767)
T ss_pred hhhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCch
Confidence 0000011233455677788899999999999999999999999999999999898999877755 78665444
Q ss_pred ChHHHHHHHHHHHHHhhC
Q 004141 754 SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 754 ~~~~~~~~i~~fl~~~L~ 771 (771)
...++.+.+++||++||+
T Consensus 504 ~~~d~~e~~~~Wfd~~Lk 521 (767)
T PRK05371 504 QSIDFRDTMNAWFTHKLL 521 (767)
T ss_pred hHHHHHHHHHHHHHhccc
Confidence 556788999999999985
No 51
>PRK11460 putative hydrolase; Provisional
Probab=99.76 E-value=7.5e-17 Score=159.49 Aligned_cols=186 Identities=13% Similarity=0.127 Sum_probs=133.1
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCC----CChhhhhcCCCCccccc-------hhhHHH
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG----FGEEALQSLPGKVGSQD-------VNDVLT 602 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~----~g~~~~~~~~~~~~~~~-------~~D~~~ 602 (771)
....|+||++||.+.+ ...+...+..|...++.+..+.++|... .|..|.... ....... .+.+.+
T Consensus 13 ~~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHH
Confidence 4457899999997665 3457778888887776555666665321 123332110 0000111 223445
Q ss_pred HHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCC
Q 004141 603 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 682 (771)
Q Consensus 603 ~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (771)
.++++.++..++.++|+++|+|+||.+++.++.++|+.++++++.++... . .
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~--------~--------------------~ 141 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA--------S--------------------L 141 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc--------c--------------------c
Confidence 56666666668889999999999999999999888988888776655310 0 0
Q ss_pred CChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHH
Q 004141 683 PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 762 (771)
Q Consensus 683 ~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i 762 (771)
+. ....++|+|++||++|++||++.++++++.|++.|.+++++.|++++|.+. .+....+
T Consensus 142 ~~---------------~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~ 201 (232)
T PRK11460 142 PE---------------TAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFA 201 (232)
T ss_pred cc---------------cccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHH
Confidence 00 011358999999999999999999999999999999999999999999986 4677888
Q ss_pred HHHHHHhh
Q 004141 763 GLWFKKYC 770 (771)
Q Consensus 763 ~~fl~~~L 770 (771)
.+||.+.|
T Consensus 202 ~~~l~~~l 209 (232)
T PRK11460 202 LDRLRYTV 209 (232)
T ss_pred HHHHHHHc
Confidence 89998876
No 52
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.74 E-value=1.4e-16 Score=165.92 Aligned_cols=220 Identities=14% Similarity=0.155 Sum_probs=131.9
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||.+.. ...|...+..|.+.||.|+++|+|| ||.+.. +........+++.+.+..++++ ++.+
T Consensus 46 ~~~lvliHG~~~~--~~~w~~~~~~L~~~gy~vi~~Dl~G---~G~S~~---~~~~~~~~~~~~a~~l~~~l~~--l~~~ 115 (302)
T PRK00870 46 GPPVLLLHGEPSW--SYLYRKMIPILAAAGHRVIAPDLIG---FGRSDK---PTRREDYTYARHVEWMRSWFEQ--LDLT 115 (302)
T ss_pred CCEEEEECCCCCc--hhhHHHHHHHHHhCCCEEEEECCCC---CCCCCC---CCCcccCCHHHHHHHHHHHHHH--cCCC
Confidence 4789999997644 4468888888988899999999999 555421 1111122345555555555544 2456
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh------hh---cC-CCCCcchhhh----hccC----CCCcc
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------MV---GT-TDIPDWCYVE----SYGS----KGKDS 678 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~------~~---~~-~~~~~~~~~~----~~~~----~~~~~ 678 (771)
++.++||||||.++..++.++|++++++|+.++...... +. .. ...+...... .... .....
T Consensus 116 ~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (302)
T PRK00870 116 DVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAA 195 (302)
T ss_pred CEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHH
Confidence 899999999999999999999999999998886421100 00 00 0000000000 0000 00000
Q ss_pred CCCCCChh---h-HHHH---hhcC-----------cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004141 679 FTESPSVE---D-LTRF---HSKS-----------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 679 ~~~~~~~~---~-~~~~---~~~s-----------p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
+......+ . ...+ .... -...+.++++|+|+++|++|..+|... +++.+.+.+. ..+++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~-~~~~~~ 273 (302)
T PRK00870 196 YDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGA-AGQPHP 273 (302)
T ss_pred hhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhcccc-ccccee
Confidence 00000000 0 0000 0000 012356789999999999999999765 6666666542 113477
Q ss_pred EeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 741 VFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 741 ~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+++++||...... ...+.+.+.+||+++
T Consensus 274 ~i~~~gH~~~~e~-p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 274 TIKGAGHFLQEDS-GEELAEAVLEFIRAT 301 (302)
T ss_pred eecCCCccchhhC-hHHHHHHHHHHHhcC
Confidence 8999999876444 468889999999865
No 53
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.73 E-value=6.6e-17 Score=168.77 Aligned_cols=233 Identities=21% Similarity=0.286 Sum_probs=157.3
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch--HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~--~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+..+...+|.| ........|+||++|||++........ .....+...|+.|+++|||-.+++ ....
T Consensus 61 ~~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~-----------~~p~ 128 (312)
T COG0657 61 GDGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH-----------PFPA 128 (312)
T ss_pred CCceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------CCCc
Confidence 33466789998 223556789999999999877655333 344566789999999999987664 2334
Q ss_pred chhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHhhCCC----ceeEEEecCCccchhhhhcCCCCCcchhh
Q 004141 596 DVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
.++|+.+++.|+.++. .+|+++|+|+|+|.||++++.++....+ ..++.++++|..+... . ......+...
T Consensus 129 ~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~-~~~~~~~~~~ 206 (312)
T COG0657 129 ALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-S-AASLPGYGEA 206 (312)
T ss_pred hHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-c-ccchhhcCCc
Confidence 5899999999999763 4889999999999999999999876433 5688999999987664 1 1111000000
Q ss_pred hhccCC-----CCccCCCCCChhhHHHHhhcCcccc--cCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 669 ESYGSK-----GKDSFTESPSVEDLTRFHSKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 669 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~sp~~~--~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
..+... ....+.... .+ ......+|+.. +.. -+|++|++|+.|.+.+ +++.+.++|+++|+++++..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~--~~-~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~ 280 (312)
T COG0657 207 DLLDAAAILAWFADLYLGAA--PD-REDPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRV 280 (312)
T ss_pred cccCHHHHHHHHHHHhCcCc--cc-cCCCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEE
Confidence 000000 000000000 00 00012344432 233 4789999999999996 89999999999999999999
Q ss_pred eCCCCccCCCCC--ChHHHHHHHHHHHHHhh
Q 004141 742 FPNDVHGIERPQ--SDFESFLNIGLWFKKYC 770 (771)
Q Consensus 742 ~~~~~H~~~~~~--~~~~~~~~i~~fl~~~L 770 (771)
+++..|.|.... .....+.++..|+...+
T Consensus 281 ~~g~~H~f~~~~~~~a~~~~~~~~~~l~~~~ 311 (312)
T COG0657 281 YPGMIHGFDLLTGPEARSALRQIAAFLRAAL 311 (312)
T ss_pred eCCcceeccccCcHHHHHHHHHHHHHHHHhc
Confidence 999999884322 23455677888877543
No 54
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.72 E-value=1.2e-16 Score=156.53 Aligned_cols=192 Identities=18% Similarity=0.150 Sum_probs=124.0
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEECCCCCCCCChhh--hhcCCCCccccch
Q 004141 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSLGFGEEA--LQSLPGKVGSQDV 597 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vv~~d~rG~~~~g~~~--~~~~~~~~~~~~~ 597 (771)
+++|.|++. .+++|+||++||++.... .+. .....+.+.||.|++||++|.++.+..+ ........+..+.
T Consensus 1 ~~ly~P~~~--~~~~P~vv~lHG~~~~~~--~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (212)
T TIGR01840 1 MYVYVPAGL--TGPRALVLALHGCGQTAS--AYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEV 76 (212)
T ss_pred CEEEcCCCC--CCCCCEEEEeCCCCCCHH--HHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccH
Confidence 368889863 467899999999776532 121 1344555689999999999865432221 1111112233457
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCc
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
.++...++++.++..+|++||+|+|+|+||++++.++.++|++++++++.++...... ... ......
T Consensus 77 ~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~----~~~-----~~~~~~---- 143 (212)
T TIGR01840 77 ESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEA----SSS-----ISATPQ---- 143 (212)
T ss_pred HHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCccccc----ccc-----hhhHhh----
Confidence 8888999999888778999999999999999999999999999999988876531110 000 000000
Q ss_pred cCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004141 678 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
................. .....+..+|++|+||++|.+||++.++++++++++.
T Consensus 144 -~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 144 -MCTAATAASVCRLVRGM-QSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred -cCCCCCHHHHHHHHhcc-CCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 00001111111111110 1112233456889999999999999999999999885
No 55
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.72 E-value=1.8e-16 Score=160.80 Aligned_cols=231 Identities=19% Similarity=0.256 Sum_probs=158.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC---CcchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---SSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~---~~~~~~~~~l-a~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+..++|+|.......+.|+|||+|||++...+ ..|......+ .+.+..|+++|||-++++ ....
T Consensus 73 ~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh-----------~~Pa 141 (336)
T KOG1515|consen 73 NLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEH-----------PFPA 141 (336)
T ss_pred CeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCC-----------CCCc
Confidence 377889999876554789999999999987653 4555566665 678999999999987764 3334
Q ss_pred chhhHHHHHHHHHHc----CCCCCCeEEEEEcChhHHHHHHHHhhC------CCceeEEEecCCccchhhhhcCC-----
Q 004141 596 DVNDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTT----- 660 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~----~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~~~v~~~p~~~~~~~~~~~----- 660 (771)
.++|+..++.|+.++ ..+|++||+|+|-|.||.+|..++.+. +..+++.|++.|++.........
T Consensus 142 ~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~e~~~~~ 221 (336)
T KOG1515|consen 142 AYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTESEKQQNL 221 (336)
T ss_pred cchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCHHHHHhh
Confidence 589999999999885 458999999999999999999988753 34689999999987654322110
Q ss_pred CC---CcchhhhhccCCCCccCCCCCChhhHHHHhhcCccc-----ccCCC-CCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004141 661 DI---PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-----HISKV-KTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 661 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~~~i-~~P~lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
+. ..+.....+.. ...|...........+|.. ..... -+|+|++.++.|... .++..+.++|+
T Consensus 222 ~~~~~~~~~~~~~~w~------~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~Lk 293 (336)
T KOG1515|consen 222 NGSPELARPKIDKWWR------LLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEKLK 293 (336)
T ss_pred cCCcchhHHHHHHHHH------HhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhhh--hhhHHHHHHHH
Confidence 00 00000000000 0000000000000112222 11122 356999999999888 89999999999
Q ss_pred hCCCCEEEEEeCCCCccCCC--C--CChHHHHHHHHHHHHHh
Q 004141 732 EKGVETKVIVFPNDVHGIER--P--QSDFESFLNIGLWFKKY 769 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~--~--~~~~~~~~~i~~fl~~~ 769 (771)
+.|++++++.++++.|++.. + ....+.+..+.+|+++.
T Consensus 294 k~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 294 KAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 99999999999999998653 2 23456777888888764
No 56
>PLN02511 hydrolase
Probab=99.72 E-value=1.8e-16 Score=169.38 Aligned_cols=243 Identities=15% Similarity=0.132 Sum_probs=144.1
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.||..+....+.+.........|+||++||..++.. ..| ...+..+.++||.|+++|+||.++. ... .+..+..
T Consensus 79 ~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~-~~y~~~~~~~~~~~g~~vv~~d~rG~G~s---~~~-~~~~~~~ 153 (388)
T PLN02511 79 PDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSD-DSYVRHMLLRARSKGWRVVVFNSRGCADS---PVT-TPQFYSA 153 (388)
T ss_pred CCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCC-CHHHHHHHHHHHHCCCEEEEEecCCCCCC---CCC-CcCEEcC
Confidence 455666644443321112345689999999765532 223 3456667789999999999995443 211 1111222
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCc--eeEEEecCCccchhhh----hcC-CCCCcchh
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALM----VGT-TDIPDWCY 667 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~--~~~~v~~~p~~~~~~~----~~~-~~~~~~~~ 667 (771)
...+|+.++++++..+. ...++.++||||||.+++.++.++++. +.+++++++..++... ... .......+
T Consensus 154 ~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~~~~~y~~~~ 231 (388)
T PLN02511 154 SFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKGFNNVYDKAL 231 (388)
T ss_pred CchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhccHHHHHHHHH
Confidence 34789999999998763 346899999999999999999999876 6777766655443110 000 00000000
Q ss_pred h-------h----hcc------------C-C--------CCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCC
Q 004141 668 V-------E----SYG------------S-K--------GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 668 ~-------~----~~~------------~-~--------~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D 715 (771)
. . .+. . . ......+.. ...+.|...++...+.+|++|+|+|+|++|
T Consensus 232 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~--~~~~yy~~~s~~~~L~~I~vPtLiI~g~dD 309 (388)
T PLN02511 232 AKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFK--SVDAYYSNSSSSDSIKHVRVPLLCIQAAND 309 (388)
T ss_pred HHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCC--CHHHHHHHcCchhhhccCCCCeEEEEcCCC
Confidence 0 0 000 0 0 000000111 111223456677788999999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh-----HHHHHHHHHHHHHhh
Q 004141 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD-----FESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~-----~~~~~~i~~fl~~~L 770 (771)
+++|++.... .+.....++++++++++||........ .-..+.+.+||+...
T Consensus 310 pi~p~~~~~~---~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~ 366 (388)
T PLN02511 310 PIAPARGIPR---EDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALE 366 (388)
T ss_pred CcCCcccCcH---hHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9998764321 122223458999999999975543321 124567888887653
No 57
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.71 E-value=1.8e-16 Score=163.75 Aligned_cols=217 Identities=18% Similarity=0.233 Sum_probs=127.3
Q ss_pred CcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 537 DPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.|.||++||.+.... +..+...+..+++.||.|+++|+|| +|.+..............+|+.+.++. .+.
T Consensus 30 ~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~~~~~~~~~~~~~~l~~~l~~------l~~ 100 (282)
T TIGR03343 30 GEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPG---FNKSDAVVMDEQRGLVNARAVKGLMDA------LDI 100 (282)
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCC---CCCCCCCcCcccccchhHHHHHHHHHH------cCC
Confidence 367999999664421 1122234556778899999999999 555432110111111123444444433 256
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCC------------CCcchhhhhccC-CCCccCCC-
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYVESYGS-KGKDSFTE- 681 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~~~~~~- 681 (771)
+++.++||||||.+++.++.++|++++++|+.+|............ .+.......+.. ........
T Consensus 101 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (282)
T TIGR03343 101 EKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSLIT 180 (282)
T ss_pred CCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcccCc
Confidence 7899999999999999999999999999999887421100000000 000000000000 00000000
Q ss_pred -----------CCChhhHHHHh---------hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 682 -----------SPSVEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 682 -----------~~~~~~~~~~~---------~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
.........+. ..+....+.++++|+|+++|++|..++++.++++.+.+. ++++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~----~~~~~~ 256 (282)
T TIGR03343 181 EELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMP----DAQLHV 256 (282)
T ss_pred HHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCC----CCEEEE
Confidence 00000000110 001122466889999999999999999988888877765 378899
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 742 FPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
++++||.... +....+.+.+.+||+
T Consensus 257 i~~agH~~~~-e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 257 FSRCGHWAQW-EHADAFNRLVIDFLR 281 (282)
T ss_pred eCCCCcCCcc-cCHHHHHHHHHHHhh
Confidence 9999998764 444577888889985
No 58
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.71 E-value=7.5e-17 Score=145.20 Aligned_cols=224 Identities=20% Similarity=0.277 Sum_probs=158.5
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
+....|..++++|+..- +...|+++++|+..++.+ .....++ .+.+.+..|+.++||| ||.+.. .+.
T Consensus 58 ~l~T~D~vtL~a~~~~~-----E~S~pTlLyfh~NAGNmG--hr~~i~~~fy~~l~mnv~ivsYRG---YG~S~G--sps 125 (300)
T KOG4391|consen 58 ELRTRDKVTLDAYLMLS-----ESSRPTLLYFHANAGNMG--HRLPIARVFYVNLKMNVLIVSYRG---YGKSEG--SPS 125 (300)
T ss_pred EEEcCcceeEeeeeecc-----cCCCceEEEEccCCCccc--chhhHHHHHHHHcCceEEEEEeec---cccCCC--Ccc
Confidence 44566788999999982 347899999999776543 2223333 5578899999999999 665421 122
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
+.| -.-|..++++|+..++..|..+++++|.|.||..|+++|++..+++.|+++.+-+.+...+.-..-.+
T Consensus 126 E~G--L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p------- 196 (300)
T KOG4391|consen 126 EEG--LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFP------- 196 (300)
T ss_pred ccc--eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheecc-------
Confidence 222 25688999999999999999999999999999999999999999999999998887664332111000
Q ss_pred ccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
+.. +. .+.+..... ++....+...+.|.|++.|.+|.+|||.+.+++|+..... ..++..||++.|+-.
T Consensus 197 ~~~---k~---i~~lc~kn~---~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT 265 (300)
T KOG4391|consen 197 FPM---KY---IPLLCYKNK---WLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDT 265 (300)
T ss_pred chh---hH---HHHHHHHhh---hcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCce
Confidence 000 00 000111111 2222334466789999999999999999999999887654 357889999999743
Q ss_pred CCCChHHHHHHHHHHHHHh
Q 004141 751 RPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 751 ~~~~~~~~~~~i~~fl~~~ 769 (771)
-.. ..+++.+.+|+.+.
T Consensus 266 ~i~--dGYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 266 WIC--DGYFQAIEDFLAEV 282 (300)
T ss_pred EEe--ccHHHHHHHHHHHh
Confidence 222 25788899998764
No 59
>PRK10985 putative hydrolase; Provisional
Probab=99.71 E-value=4.2e-16 Score=163.29 Aligned_cols=225 Identities=14% Similarity=0.110 Sum_probs=137.4
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
....|+||++||.++..........+..|.++||.|+++|+||.++..... .........+|+..+++++.++.
T Consensus 55 ~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~----~~~~~~~~~~D~~~~i~~l~~~~-- 128 (324)
T PRK10985 55 ARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRL----HRIYHSGETEDARFFLRWLQREF-- 128 (324)
T ss_pred CCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCC----cceECCCchHHHHHHHHHHHHhC--
Confidence 345799999999765532222345678899999999999999964432111 11111234789999999998763
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCCc--eeEEEecCCccchhhhhcCC-C----CCcchhh-----------hhccC--
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALMVGTT-D----IPDWCYV-----------ESYGS-- 673 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~--~~~~v~~~p~~~~~~~~~~~-~----~~~~~~~-----------~~~~~-- 673 (771)
...+++++||||||.+++.+++++++. +.++|++++..++....... . .....+. ..+..
T Consensus 129 ~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 208 (324)
T PRK10985 129 GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTL 208 (324)
T ss_pred CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 346799999999999888888776543 77777777765432110000 0 0000000 00000
Q ss_pred ------------------CCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004141 674 ------------------KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 674 ------------------~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
.....+.+. ....+.+...++...+.++++|+|+|+|++|++++++....+.+ ...
T Consensus 209 ~~~~~~~~~~~~~~~fd~~~~~~~~g~--~~~~~~y~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~----~~~ 282 (324)
T PRK10985 209 PINLAQLKSVRRLREFDDLITARIHGF--ADAIDYYRQCSALPLLNQIRKPTLIIHAKDDPFMTHEVIPKPES----LPP 282 (324)
T ss_pred cCCHHHHhcCCcHHHHhhhheeccCCC--CCHHHHHHHCChHHHHhCCCCCEEEEecCCCCCCChhhChHHHH----hCC
Confidence 000000011 11233344556666788999999999999999998766554432 223
Q ss_pred CEEEEEeCCCCccCCCC----CChHHHHHHHHHHHHHhh
Q 004141 736 ETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~L 770 (771)
++++++++++||..... ....-..+.+++||+.++
T Consensus 283 ~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 283 NVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred CeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 57889999999974432 122234456888997765
No 60
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.71 E-value=5.2e-16 Score=162.45 Aligned_cols=245 Identities=14% Similarity=0.164 Sum_probs=144.1
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--------------------cc----hHHHHHHHHCCcEE
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--------------------SY----SKSLAFLSSVGYSL 569 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--------------------~~----~~~~~~la~~G~~V 569 (771)
.+.+|..+..+.+.|+ .++.+|+++||.+...... .| ...+..|+++||.|
T Consensus 3 ~~~~g~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V 77 (332)
T TIGR01607 3 RNKDGLLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSV 77 (332)
T ss_pred cCCCCCeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcE
Confidence 3457888988888774 3568999999954433211 11 35688999999999
Q ss_pred EEECCCCCCCCChhhhhcCCCCcc--ccchhhHHHHHHHHHHc------------------CCCCCCeEEEEEcChhHHH
Q 004141 570 LIVNYRGSLGFGEEALQSLPGKVG--SQDVNDVLTAIDHVIDM------------------GLANPSKVTVVGGSHGGFL 629 (771)
Q Consensus 570 v~~d~rG~~~~g~~~~~~~~~~~~--~~~~~D~~~~i~~l~~~------------------~~~d~~ri~l~G~S~GG~~ 629 (771)
+++|+||.+..... ....+... ..-++|+...++.+.+. ..-...+++|+||||||.+
T Consensus 78 ~~~D~rGHG~S~~~--~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i 155 (332)
T TIGR01607 78 YGLDLQGHGESDGL--QNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNI 155 (332)
T ss_pred EEecccccCCCccc--cccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHH
Confidence 99999994432211 00011111 11246666666665441 0111357999999999999
Q ss_pred HHHHHhhCCC--------ceeEEEecCCccchhhhhcC--CCCCcch--hh---hhccC--------------CCCccCC
Q 004141 630 TTHLIGQAPD--------KFVAAAARNPLCNLALMVGT--TDIPDWC--YV---ESYGS--------------KGKDSFT 680 (771)
Q Consensus 630 a~~~a~~~p~--------~~~~~v~~~p~~~~~~~~~~--~~~~~~~--~~---~~~~~--------------~~~~~~~ 680 (771)
++.++.++++ .++++|+.+|.+.+...... ...+.+. .. ..+.. .....+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 235 (332)
T TIGR01607 156 ALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDIIK 235 (332)
T ss_pred HHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHHh
Confidence 9998865432 58888888887533110000 0000000 00 00000 0000000
Q ss_pred -------CCCChhhHHHHhhcCc--ccccCCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 681 -------ESPSVEDLTRFHSKSP--ISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 681 -------~~~~~~~~~~~~~~sp--~~~~~~i--~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
..........+..... ...+..+ ++|+|+++|++|.+++++.++.+++.+.. .++++.++++++|.+
T Consensus 236 ~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H~i 313 (332)
T TIGR01607 236 FDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDHVI 313 (332)
T ss_pred cCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCCCC
Confidence 0001111111111100 1133445 68999999999999999998888776543 246788999999998
Q ss_pred CCCCChHHHHHHHHHHHH
Q 004141 750 ERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~fl~ 767 (771)
.......++++.+.+||+
T Consensus 314 ~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 314 TIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred ccCCCHHHHHHHHHHHhh
Confidence 877667789999999986
No 61
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.70 E-value=3.1e-15 Score=149.23 Aligned_cols=334 Identities=15% Similarity=0.157 Sum_probs=206.3
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecC---CC
Q 004141 45 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP---EN 121 (771)
Q Consensus 45 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~---~~ 121 (771)
++|.+ -|.+|.|+... ++|.+++ ..+++.+||+.- +-+..|.+||||+++||.+-- ..
T Consensus 44 l~PDI--~GD~IiFt~~D----------dlWe~sl--k~g~~~ritS~l-----GVvnn~kf~pdGrkvaf~rv~~~ss~ 104 (668)
T COG4946 44 LNPDI--YGDRIIFTCCD----------DLWEYSL--KDGKPLRITSGL-----GVVNNPKFSPDGRKVAFSRVMLGSSL 104 (668)
T ss_pred cCCcc--cCcEEEEEech----------HHHHhhh--ccCCeeEEeccc-----ceeccccCCCCCcEEEEEEEEecCCC
Confidence 45544 47788998643 7888776 344778887663 668899999999999995532 22
Q ss_pred CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC-----CC---------C
Q 004141 122 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL-----GS---------T 186 (771)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~-----~~---------~ 186 (771)
...++|.+. .+|+.+++|....... .-.-|+|||+.|++.-... +- +.|.. .+ +
T Consensus 105 ~taDly~v~~e~Ge~kRiTyfGr~fT---------~VaG~~~dg~iiV~TD~~t-PF-~q~~~lYkv~~dg~~~e~LnlG 173 (668)
T COG4946 105 QTADLYVVPSEDGEAKRITYFGRRFT---------RVAGWIPDGEIIVSTDFHT-PF-SQWTELYKVNVDGIKTEPLNLG 173 (668)
T ss_pred ccccEEEEeCCCCcEEEEEEeccccc---------eeeccCCCCCEEEEeccCC-Cc-ccceeeeEEccCCceeeeccCC
Confidence 556799998 8899999998732221 2345999999887742111 10 00000 00 0
Q ss_pred C------------CCCCCccCCCCCC------------------------------------c------------ccccC
Q 004141 187 K------------GGSSDKDCNSWKG------------------------------------Q------------GDWEE 206 (771)
Q Consensus 187 ~------------~~~~~~~~~~~~~------------------------------------~------------~~~~~ 206 (771)
+ .++...+-+.|++ . .+|+-
T Consensus 174 pathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSv 253 (668)
T COG4946 174 PATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSV 253 (668)
T ss_pred ceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEe
Confidence 0 0000001111110 0 00111
Q ss_pred Cc----------------------CcccCCccCceEEEEEccCCceeecc-CCCCCCccceE----------EEec-CCC
Q 004141 207 DW----------------------GETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQV----------VWAP-LNE 252 (771)
Q Consensus 207 d~----------------------g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~----------~wsp-Dg~ 252 (771)
|. |..++.....+||++|.++..++.|. +.|-.....++ -||+ +|.
T Consensus 254 dldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd 333 (668)
T COG4946 254 DLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD 333 (668)
T ss_pred ccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc
Confidence 11 33344445578999999988887774 22221111110 1222 566
Q ss_pred CCccEEEEEeecCc-------------ceeeeeee------------eccCCceeEEEecccccchhhhhhhhcCCCCCC
Q 004141 253 GLHQYLVFVGWSSE-------------TRKLGIKY------------CYNRPCALYAVRVSLYKSEASELELKESSSEDL 307 (771)
Q Consensus 253 ~~~~~l~~~~~~~~-------------~~~~g~~~------------~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 307 (771)
. |++++.-.. ..+.|..| -.+....|-++|. .++
T Consensus 334 ~----ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~-----------------~~~ 392 (668)
T COG4946 334 Y----IALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK-----------------DGG 392 (668)
T ss_pred E----EEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEec-----------------CCc
Confidence 6 777763211 11112211 1112224555665 788
Q ss_pred cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc
Q 004141 308 PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 387 (771)
Q Consensus 308 ~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~ 387 (771)
+.+++....+.+.....|||||+++.. ++ ..+||++|+++|..+.+......
T Consensus 393 e~kr~e~~lg~I~av~vs~dGK~~vva-Nd----------r~el~vididngnv~~idkS~~~----------------- 444 (668)
T COG4946 393 EVKRIEKDLGNIEAVKVSPDGKKVVVA-ND----------RFELWVIDIDNGNVRLIDKSEYG----------------- 444 (668)
T ss_pred eEEEeeCCccceEEEEEcCCCcEEEEE-cC----------ceEEEEEEecCCCeeEecccccc-----------------
Confidence 889998889999999999999987643 33 36899999999988666444322
Q ss_pred cCCCCCCccccCCCEEEEEeeeC-CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCe
Q 004141 388 SSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQ 459 (771)
Q Consensus 388 ~~~~~~~~~s~Dg~~l~~~~~~~-~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~ 459 (771)
-+..+.|+|+++.|.++-..+ -..+|-.+|++++++..+|.+.+....++|++|+++|+|++...-.|+.
T Consensus 445 --lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~ 515 (668)
T COG4946 445 --LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSN 515 (668)
T ss_pred --eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCCC
Confidence 234678999999888776533 2345777899999999999877655568999999999999877766653
No 62
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.70 E-value=3.1e-16 Score=162.83 Aligned_cols=219 Identities=17% Similarity=0.170 Sum_probs=132.4
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC--CccccchhhHHHHHHHHHHcCCCCC
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--KVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~--~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
|+||++||.+.+ ...|...+..|+.. |.|+++|+|| +|.+....... .......+++...+..+++.. ..
T Consensus 30 ~~vlllHG~~~~--~~~w~~~~~~L~~~-~~vi~~DlpG---~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l--~~ 101 (294)
T PLN02824 30 PALVLVHGFGGN--ADHWRKNTPVLAKS-HRVYAIDLLG---YGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDV--VG 101 (294)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHHhC-CeEEEEcCCC---CCCCCCCccccccccccCCHHHHHHHHHHHHHHh--cC
Confidence 789999997765 44788888888766 7999999999 55443211000 001234556665555555442 34
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCC--------------Ccc--hhhh----------
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI--------------PDW--CYVE---------- 669 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~--------------~~~--~~~~---------- 669 (771)
+++.|+||||||.+++.++.++|++++++|+.++............. ..+ .+..
T Consensus 102 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (294)
T PLN02824 102 DPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKN 181 (294)
T ss_pred CCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHH
Confidence 78999999999999999999999999999998875321000000000 000 0000
Q ss_pred ----hccCC-CC-----ccCC---CCCC-hhhHHHHhhcC----cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004141 670 ----SYGSK-GK-----DSFT---ESPS-VEDLTRFHSKS----PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 670 ----~~~~~-~~-----~~~~---~~~~-~~~~~~~~~~s----p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
.+... .. ..+. ..+. ......+.... ....+.++++|+|+++|++|..+|.+.++.+.+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~- 260 (294)
T PLN02824 182 ILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYANFD- 260 (294)
T ss_pred HHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcC-
Confidence 00000 00 0000 0000 00000111111 12346778999999999999999988776644332
Q ss_pred hCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
...++++++++||.... +....+...+.+||+++
T Consensus 261 ---~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 261 ---AVEDFIVLPGVGHCPQD-EAPELVNPLIESFVARH 294 (294)
T ss_pred ---CccceEEeCCCCCChhh-hCHHHHHHHHHHHHhcC
Confidence 23688999999997664 44557889999999764
No 63
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.70 E-value=6.6e-16 Score=158.67 Aligned_cols=229 Identities=12% Similarity=0.141 Sum_probs=137.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.+++++.... +...+.||++||.+.+ ...|...+..|.+ +|.|+++|+|| +|.+.... ....
T Consensus 10 ~~~~~~~~~~~~-----~~~~~plvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~~-----~~~~ 73 (276)
T TIGR02240 10 DGQSIRTAVRPG-----KEGLTPLLIFNGIGAN--LELVFPFIEALDP-DLEVIAFDVPG---VGGSSTPR-----HPYR 73 (276)
T ss_pred CCcEEEEEEecC-----CCCCCcEEEEeCCCcc--hHHHHHHHHHhcc-CceEEEECCCC---CCCCCCCC-----CcCc
Confidence 566776655321 1223579999996655 3467777777754 79999999999 55543211 1123
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc-------CCCCCcc---h
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPDW---C 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-------~~~~~~~---~ 666 (771)
.+++.+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.++......... ....... .
T Consensus 74 ~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (276)
T TIGR02240 74 FPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQPS 151 (276)
T ss_pred HHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhccc
Confidence 44444444444444 2456799999999999999999999999999999987653210000 0000000 0
Q ss_pred ----h-hhhccCCC------CccCC----CCCChhhH-H--HHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHH
Q 004141 667 ----Y-VESYGSKG------KDSFT----ESPSVEDL-T--RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728 (771)
Q Consensus 667 ----~-~~~~~~~~------~~~~~----~~~~~~~~-~--~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~ 728 (771)
. ...+.... ...+. ........ . ..........+.++++|+|+++|++|+.+|++.++++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~ 231 (276)
T TIGR02240 152 HGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLAW 231 (276)
T ss_pred cccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHH
Confidence 0 00000000 00000 00000000 0 001111223467889999999999999999998888877
Q ss_pred HHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 729 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
.+.. .+++++++ ||..... ...++.+.+.+|+++.
T Consensus 232 ~~~~----~~~~~i~~-gH~~~~e-~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 232 RIPN----AELHIIDD-GHLFLIT-RAEAVAPIIMKFLAEE 266 (276)
T ss_pred hCCC----CEEEEEcC-CCchhhc-cHHHHHHHHHHHHHHh
Confidence 7643 57777865 9986654 4568889999999864
No 64
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.70 E-value=4.4e-16 Score=158.32 Aligned_cols=216 Identities=15% Similarity=0.257 Sum_probs=131.9
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.+.|+||++||.+.+ ...|...+..|. +||.|+++|+||. |.+.... ......++....+..+++. ++
T Consensus 11 ~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~---G~S~~~~----~~~~~~~~~~~~~~~~i~~--~~ 78 (257)
T TIGR03611 11 ADAPVVVLSSGLGGS--GSYWAPQLDVLT-QRFHVVTYDHRGT---GRSPGEL----PPGYSIAHMADDVLQLLDA--LN 78 (257)
T ss_pred CCCCEEEEEcCCCcc--hhHHHHHHHHHH-hccEEEEEcCCCC---CCCCCCC----cccCCHHHHHHHHHHHHHH--hC
Confidence 346889999997655 335656666664 5799999999994 4432110 1112345555444444444 24
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh-----------cCCCCCcc-------hhhhhccCCCC
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-----------GTTDIPDW-------CYVESYGSKGK 676 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~~ 676 (771)
.+++.++||||||.+++.++.++|+.++++|+.++........ .......+ .+...+.....
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENA 158 (257)
T ss_pred CCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccc
Confidence 5789999999999999999999999999999888754321000 00000000 00000000000
Q ss_pred --------ccCCCCCChh----hHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 677 --------DSFTESPSVE----DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 677 --------~~~~~~~~~~----~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.......... ....+...+....+.++++|+|+++|++|..+|++.+.++++.+.. .+++.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~ 234 (257)
T TIGR03611 159 ARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPN----AQLKLLPY 234 (257)
T ss_pred hhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcCC----ceEEEECC
Confidence 0000000000 0011122233345678899999999999999999988888776643 67888999
Q ss_pred CCccCCCCCChHHHHHHHHHHHH
Q 004141 745 DVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+||.+... ...++.+.+.+||+
T Consensus 235 ~gH~~~~~-~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 235 GGHASNVT-DPETFNRALLDFLK 256 (257)
T ss_pred CCCCcccc-CHHHHHHHHHHHhc
Confidence 99987644 45577888888885
No 65
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.69 E-value=1.5e-15 Score=148.99 Aligned_cols=225 Identities=18% Similarity=0.230 Sum_probs=138.0
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
+.+..|+|+++||.|.. +..|+.++..|+.+||+|+++|+|| ||.+.. +.......+..+...+..+++.
T Consensus 40 g~~~gP~illlHGfPe~--wyswr~q~~~la~~~~rviA~DlrG---yG~Sd~---P~~~~~Yt~~~l~~di~~lld~-- 109 (322)
T KOG4178|consen 40 GPGDGPIVLLLHGFPES--WYSWRHQIPGLASRGYRVIAPDLRG---YGFSDA---PPHISEYTIDELVGDIVALLDH-- 109 (322)
T ss_pred cCCCCCEEEEEccCCcc--chhhhhhhhhhhhcceEEEecCCCC---CCCCCC---CCCcceeeHHHHHHHHHHHHHH--
Confidence 44567999999998876 5578899999999999999999999 666543 3332333444444444444443
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh-----hhhcCCCCCcchh--hhhccC-C----------
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-----LMVGTTDIPDWCY--VESYGS-K---------- 674 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~-----~~~~~~~~~~~~~--~~~~~~-~---------- 674 (771)
+.-+|+.|+||+||+.+|..++..+|+++.+.|+.+...... ......-..++.. ....+. .
T Consensus 110 Lg~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~~~ 189 (322)
T KOG4178|consen 110 LGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDTEM 189 (322)
T ss_pred hccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchhHH
Confidence 125799999999999999999999999999999877544310 0000000000000 000000 0
Q ss_pred --------CCccCCCC-------C---ChhhH-------------------HHHhhcCc--ccccCCCCCcEEEEeeCCC
Q 004141 675 --------GKDSFTES-------P---SVEDL-------------------TRFHSKSP--ISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 675 --------~~~~~~~~-------~---~~~~~-------------------~~~~~~sp--~~~~~~i~~P~lii~G~~D 715 (771)
........ + ++++. ..+....+ .....++++|++++.|+.|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~D 269 (322)
T KOG4178|consen 190 LVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDLD 269 (322)
T ss_pred hHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEecCc
Confidence 00000000 0 01111 11112211 2345678899999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
...+...-.+.+++.-.. -.+.++++++||....++ ..++.+.++.||++..
T Consensus 270 ~v~~~p~~~~~~rk~vp~--l~~~vv~~~~gH~vqqe~-p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 270 PVLPYPIFGELYRKDVPR--LTERVVIEGIGHFVQQEK-PQEVNQAILGFINSFS 321 (322)
T ss_pred ccccchhHHHHHHHhhcc--ccceEEecCCcccccccC-HHHHHHHHHHHHHhhc
Confidence 998866323333332221 136788999999776544 4589999999999864
No 66
>PLN02965 Probable pheophorbidase
Probab=99.69 E-value=1.1e-15 Score=154.82 Aligned_cols=214 Identities=17% Similarity=0.153 Sum_probs=129.9
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC-Ce
Q 004141 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP-SK 617 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~-~r 617 (771)
+||++||.+.+ ...|...+..|++.||.|+++|+|| +|.+... .. .....+++.+.+..+++. ++. ++
T Consensus 5 ~vvllHG~~~~--~~~w~~~~~~L~~~~~~via~Dl~G---~G~S~~~--~~--~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHG--AWCWYKLATLLDAAGFKSTCVDLTG---AGISLTD--SN--TVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCC--cCcHHHHHHHHhhCCceEEEecCCc---CCCCCCC--cc--ccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 59999997765 4468888889988999999999999 5544211 11 112345555444444443 223 58
Q ss_pred EEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc---ch---hhhh--cCCCCCcchh--hhhccCC---------CC-c
Q 004141 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC---NL---ALMV--GTTDIPDWCY--VESYGSK---------GK-D 677 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~---~~---~~~~--~~~~~~~~~~--~~~~~~~---------~~-~ 677 (771)
+.++||||||.+++.++.++|++++++|+.++.. .. .... .......|.. ....... .. .
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRH 153 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHH
Confidence 9999999999999999999999999999887642 10 0000 0000000000 0000000 00 0
Q ss_pred cCCCCCChhhHHHH---hhcCcc----------cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 678 SFTESPSVEDLTRF---HSKSPI----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 678 ~~~~~~~~~~~~~~---~~~sp~----------~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.+......+..... ....+. ..+.++++|+|+++|++|..+|++.++.+.+.+.. .+++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~----a~~~~i~~ 229 (255)
T PLN02965 154 YYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPP----AQTYVLED 229 (255)
T ss_pred HHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCc----ceEEEecC
Confidence 00000000000000 000000 12346899999999999999999888888776654 67889999
Q ss_pred CCccCCCCCChHHHHHHHHHHHHH
Q 004141 745 DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+||.+.. +...++...+.+|++.
T Consensus 230 ~GH~~~~-e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 230 SDHSAFF-SVPTTLFQYLLQAVSS 252 (255)
T ss_pred CCCchhh-cCHHHHHHHHHHHHHH
Confidence 9998775 4445788888888765
No 67
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=3.5e-16 Score=146.50 Aligned_cols=240 Identities=17% Similarity=0.197 Sum_probs=156.6
Q ss_pred cccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChh----hhh
Q 004141 511 ANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE----ALQ 586 (771)
Q Consensus 511 ~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~----~~~ 586 (771)
.++..-.|.+|.||++.|+. ..++.|+||-.||-.+..+ ....+-.++..||+|+..|.||.+++..+ ...
T Consensus 59 vTf~g~~g~rI~gwlvlP~~--~~~~~P~vV~fhGY~g~~g---~~~~~l~wa~~Gyavf~MdvRGQg~~~~dt~~~p~~ 133 (321)
T COG3458 59 VTFTGYGGARIKGWLVLPRH--EKGKLPAVVQFHGYGGRGG---EWHDMLHWAVAGYAVFVMDVRGQGSSSQDTADPPGG 133 (321)
T ss_pred EEEeccCCceEEEEEEeecc--cCCccceEEEEeeccCCCC---CccccccccccceeEEEEecccCCCccccCCCCCCC
Confidence 36777789999999999984 3388999999999444322 12233456789999999999997665221 111
Q ss_pred -cCCCC------------ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccch
Q 004141 587 -SLPGK------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653 (771)
Q Consensus 587 -~~~~~------------~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~ 653 (771)
..++. +....+.|+..+++-+.....+|.+||++.|.|.||.+++.+++.. .+++++++..|...-
T Consensus 134 ~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~-~rik~~~~~~Pfl~d 212 (321)
T COG3458 134 PSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALD-PRIKAVVADYPFLSD 212 (321)
T ss_pred CcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcC-hhhhccccccccccc
Confidence 11111 0112356888999999888889999999999999999999998875 479999999997542
Q ss_pred h-hhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHh
Q 004141 654 A-LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 732 (771)
Q Consensus 654 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~ 732 (771)
. ..........+.....|.. ....+..+..+.+...+....+.+++.|+|+..|-.|++|||......++++..
T Consensus 213 f~r~i~~~~~~~ydei~~y~k-----~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~~ 287 (321)
T COG3458 213 FPRAIELATEGPYDEIQTYFK-----RHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALTT 287 (321)
T ss_pred chhheeecccCcHHHHHHHHH-----hcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhcccC
Confidence 2 1111100000000000000 001111122333334455567889999999999999999999998999988865
Q ss_pred CCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 733 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 733 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
. .++.+||.-+|.-. +. -..+++..|++.
T Consensus 288 ~---K~i~iy~~~aHe~~-p~---~~~~~~~~~l~~ 316 (321)
T COG3458 288 S---KTIEIYPYFAHEGG-PG---FQSRQQVHFLKI 316 (321)
T ss_pred C---ceEEEeeccccccC-cc---hhHHHHHHHHHh
Confidence 3 56667777778543 21 123345666653
No 68
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.68 E-value=4e-15 Score=154.58 Aligned_cols=216 Identities=16% Similarity=0.220 Sum_probs=130.2
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..|++.+ .|+++|+|| +|.+.... . .....+..+.+..+++. ++.+
T Consensus 27 g~~vvllHG~~~~--~~~w~~~~~~L~~~~-~via~D~~G---~G~S~~~~--~---~~~~~~~a~dl~~ll~~--l~~~ 93 (295)
T PRK03592 27 GDPIVFLHGNPTS--SYLWRNIIPHLAGLG-RCLAPDLIG---MGASDKPD--I---DYTFADHARYLDAWFDA--LGLD 93 (295)
T ss_pred CCEEEEECCCCCC--HHHHHHHHHHHhhCC-EEEEEcCCC---CCCCCCCC--C---CCCHHHHHHHHHHHHHH--hCCC
Confidence 3689999997765 446778888888875 999999999 55543211 1 12344544444444444 2347
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh-------------hcCCCCCcchhh--hhccCCC-CccCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------------VGTTDIPDWCYV--ESYGSKG-KDSFT 680 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~-------------~~~~~~~~~~~~--~~~~~~~-~~~~~ 680 (771)
++.++|||+||.+++.++.++|++++++|+.++....... ............ ..+.... ...+.
T Consensus 94 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (295)
T PRK03592 94 DVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEENVFIERVLPGSIL 173 (295)
T ss_pred CeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchhhHHhhcccCccc
Confidence 8999999999999999999999999999998874321000 000000000000 0000000 00000
Q ss_pred CCCChhhHHHH-----------------hhcC--------------cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004141 681 ESPSVEDLTRF-----------------HSKS--------------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 681 ~~~~~~~~~~~-----------------~~~s--------------p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~ 729 (771)
.....+....+ .... ....+.++++|+|+|+|++|..+++....++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~ 253 (295)
T PRK03592 174 RPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAIRDWCRS 253 (295)
T ss_pred ccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHHHHHHHH
Confidence 00000000000 0000 0122466899999999999999966666565544
Q ss_pred HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+.. +.++.+++++||..... ...++.+.+.+|+++.
T Consensus 254 ~~~---~~~~~~i~~~gH~~~~e-~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 254 WPN---QLEITVFGAGLHFAQED-SPEEIGAAIAAWLRRL 289 (295)
T ss_pred hhh---hcceeeccCcchhhhhc-CHHHHHHHHHHHHHHh
Confidence 332 36888999999987744 4568889999999865
No 69
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.68 E-value=1.3e-15 Score=154.78 Aligned_cols=217 Identities=15% Similarity=0.146 Sum_probs=126.7
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
.....|+||++||.+.+ ...|...+..|+ .+|.|+.+|+|| +|.+.. ... ..+++..+.+..+++.
T Consensus 12 ~~~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G---~G~s~~---~~~---~~~~~~~~d~~~~l~~-- 77 (255)
T PRK10673 12 NPHNNSPIVLVHGLFGS--LDNLGVLARDLV-NDHDIIQVDMRN---HGLSPR---DPV---MNYPAMAQDLLDTLDA-- 77 (255)
T ss_pred CCCCCCCEEEECCCCCc--hhHHHHHHHHHh-hCCeEEEECCCC---CCCCCC---CCC---CCHHHHHHHHHHHHHH--
Confidence 44456889999997665 345666677774 579999999999 444321 111 1233333333333332
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc-chh-----hhh----c--CCCCCcchh-hh----hccCCC
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLA-----LMV----G--TTDIPDWCY-VE----SYGSKG 675 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~-~~~-----~~~----~--~~~~~~~~~-~~----~~~~~~ 675 (771)
+..+++.|+||||||.+++.++.++|++++++|+.++.. ... .+. . ......+.. .. ......
T Consensus 78 l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T PRK10673 78 LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEG 157 (255)
T ss_pred cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHH
Confidence 234679999999999999999999999999998864321 100 000 0 000000000 00 000000
Q ss_pred -----CccCCCCC----ChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004141 676 -----KDSFTESP----SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 746 (771)
Q Consensus 676 -----~~~~~~~~----~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~ 746 (771)
...+.... .......+........+..+++|+|+++|++|..++.+..+.+.+.+. ++++.+++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~g 233 (255)
T PRK10673 158 VIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFP----QARAHVIAGAG 233 (255)
T ss_pred HHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCC----CcEEEEeCCCC
Confidence 00000000 000011111111223355678999999999999998777666655543 47888999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHH
Q 004141 747 HGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
|.... +....+.+.+.+||.+
T Consensus 234 H~~~~-~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 234 HWVHA-EKPDAVLRAIRRYLND 254 (255)
T ss_pred Ceeec-cCHHHHHHHHHHHHhc
Confidence 97654 4455788999999875
No 70
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.68 E-value=2.5e-15 Score=168.48 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=101.5
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.||.+|.+.+|.|+ ..++.|+||++||.+.... ..........|+++||+|+++|+||.++++..+. ..+
T Consensus 4 ~DG~~L~~~~~~P~---~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~-----~~~ 75 (550)
T TIGR00976 4 RDGTRLAIDVYRPA---GGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFD-----LLG 75 (550)
T ss_pred CCCCEEEEEEEecC---CCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceE-----ecC
Confidence 47889999999997 3457899999998554321 0111224567899999999999999665543321 112
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~ 654 (771)
....+|+.++++|+.++++.+ .+|+++|+|+||.+++.++..+|+.++++|..++..++.
T Consensus 76 ~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~ 135 (550)
T TIGR00976 76 SDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLY 135 (550)
T ss_pred cccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchh
Confidence 456899999999999987665 699999999999999999999999999999999887754
No 71
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.67 E-value=1.6e-15 Score=139.28 Aligned_cols=145 Identities=21% Similarity=0.372 Sum_probs=111.5
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeE
Q 004141 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 618 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 618 (771)
+||++||++.. ...|...++.|+++||.|+.+|+|+.+.. ....++.++++++.+.. .+.++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDS--------------DGADAVERVLADIRAGY-PDPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTS--------------HHSHHHHHHHHHHHHHH-CTCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCcc--------------chhHHHHHHHHHHHhhc-CCCCcE
Confidence 58999997765 44678889999999999999999984332 11235555566554322 278999
Q ss_pred EEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCccc
Q 004141 619 TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS 698 (771)
Q Consensus 619 ~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 698 (771)
+++|||+||.+++.++.+. +.++++|+.+|..+ ..
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~--------------------------------------------~~ 98 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD--------------------------------------------SE 98 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSG--------------------------------------------CH
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccc--------------------------------------------hh
Confidence 9999999999999999987 78999998888310 01
Q ss_pred ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004141 699 HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 699 ~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
.+.+.+.|+|+++|++|..+++++.++++++++ .+.+++++++++|+
T Consensus 99 ~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 99 DLAKIRIPVLFIHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp HHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred hhhccCCcEEEEEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 123455699999999999999999999998887 46899999999995
No 72
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.66 E-value=9.4e-16 Score=155.01 Aligned_cols=213 Identities=15% Similarity=0.175 Sum_probs=127.9
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.+ ...|...+..| ..||.|+++|+||. |.+... ......+++.+.+..+++. .+.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G~---G~s~~~-----~~~~~~~~~~~~~~~~i~~--~~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPAL-TPDFRVLRYDKRGH---GLSDAP-----EGPYSIEDLADDVLALLDH--LGI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHh-hcccEEEEecCCCC---CCCCCC-----CCCCCHHHHHHHHHHHHHH--hCC
Confidence 56899999996554 33566666666 46899999999994 443211 1122455656556555554 345
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh---hc-CCCCCcchhh---h-hccCCCCccCCCCCC--h
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---VG-TTDIPDWCYV---E-SYGSKGKDSFTESPS--V 685 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~---~~-~~~~~~~~~~---~-~~~~~~~~~~~~~~~--~ 685 (771)
+++.++|||+||.+++.++.++|+.++++++.++....... .. .......... . .........+..... .
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 78999999999999999999999999998887764321100 00 0000000000 0 000000000000000 0
Q ss_pred hhH----------------HHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 686 EDL----------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 686 ~~~----------------~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
... ..+...+....+.++++|+|+++|++|..+|.+....+.+.+. ..++.++++++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 234 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVP----GARFAEIRGAGHIP 234 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCC----CceEEEECCCCCcc
Confidence 000 0111112223456788999999999999999988777776654 36888999999987
Q ss_pred CCCCChHHHHHHHHHHH
Q 004141 750 ERPQSDFESFLNIGLWF 766 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~fl 766 (771)
.... ...+.+.+.+||
T Consensus 235 ~~~~-p~~~~~~i~~fl 250 (251)
T TIGR02427 235 CVEQ-PEAFNAALRDFL 250 (251)
T ss_pred cccC-hHHHHHHHHHHh
Confidence 6443 446666777775
No 73
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.66 E-value=4.7e-15 Score=159.29 Aligned_cols=237 Identities=14% Similarity=0.143 Sum_probs=140.3
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHH---HCCcEEEEECCCCCCCCChhhhhcCC
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS---SVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la---~~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
....+.+++.....|++ ....|.||++||.+.+. ..|.. .+..|+ +.+|.|+++|+|| ||.+.... .
T Consensus 181 ~~~~~~~l~~~~~gp~~---~~~k~~VVLlHG~~~s~--~~W~~~~~~~L~~~~~~~yrVia~Dl~G---~G~S~~p~-~ 251 (481)
T PLN03087 181 LSSSNESLFVHVQQPKD---NKAKEDVLFIHGFISSS--AFWTETLFPNFSDAAKSTYRLFAVDLLG---FGRSPKPA-D 251 (481)
T ss_pred EeeCCeEEEEEEecCCC---CCCCCeEEEECCCCccH--HHHHHHHHHHHHHHhhCCCEEEEECCCC---CCCCcCCC-C
Confidence 34445778887777763 23347899999977553 34543 234443 4799999999999 55543210 0
Q ss_pred CCccccchhhHHHHH-HHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-------h-h-cC
Q 004141 590 GKVGSQDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-------M-V-GT 659 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i-~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-------~-~-~~ 659 (771)
.....++..+.+ ..+++. .+.+++.++||||||.+++.++.++|++++++|+.+|...... . . ..
T Consensus 252 ---~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~~~~~~~~ 326 (481)
T PLN03087 252 ---SLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQATQYVMRKV 326 (481)
T ss_pred ---CcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHHHHHHHHh
Confidence 112355555555 244444 2457899999999999999999999999999999886432110 0 0 00
Q ss_pred CCCCcch----------hhhhccCCC----------Ccc----CCCCCChh-hHH---------------HHhhcC----
Q 004141 660 TDIPDWC----------YVESYGSKG----------KDS----FTESPSVE-DLT---------------RFHSKS---- 695 (771)
Q Consensus 660 ~~~~~~~----------~~~~~~~~~----------~~~----~~~~~~~~-~~~---------------~~~~~s---- 695 (771)
.....|. ..+...... ... ........ ... .+....
T Consensus 327 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~l 406 (481)
T PLN03087 327 APRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNIICGSGSKL 406 (481)
T ss_pred cccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHHhchhhhh
Confidence 0000000 000000000 000 00000000 000 000000
Q ss_pred -c-c-cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 696 -P-I-SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 696 -p-~-~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
. . ....++++|+|+++|++|..+|++.++.+.+.+.. +++++++++||.....+....+...+.+|...
T Consensus 407 ~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP~----a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 407 DGYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVPR----ARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred hhHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCCC----CEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 0 0 11236899999999999999999998888777754 78999999999866545556788888888753
No 74
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=1.3e-14 Score=141.08 Aligned_cols=303 Identities=21% Similarity=0.279 Sum_probs=181.1
Q ss_pred cCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004141 92 APFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 92 ~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
+.++...+.+...+|||+|++||.-+. .....+|+-.....+..+.... .|..+++|||||++||..+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsG-----D~TvR~WD~~TeTp~~t~KgH~-------~WVlcvawsPDgk~iASG~ 176 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSG-----DTTVRLWDLDTETPLFTCKGHK-------NWVLCVAWSPDGKKIASGS 176 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCC-----CceEEeeccCCCCcceeecCCc-------cEEEEEEECCCcchhhccc
Confidence 345555567889999999999986432 3466777433333444443222 2558999999999999988
Q ss_pred cCCCCCCCCccCCC-CCCCCCCccCCCCCCcccccC-----CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceE
Q 004141 172 EEPSPSKPTFSLGS-TKGGSSDKDCNSWKGQGDWEE-----DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQV 245 (771)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~ 245 (771)
.++... .|+... .+.++.+..+..|+....|.| .-+......+++.+.+||+..+...... ......+.-+
T Consensus 177 ~dg~I~--lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-sgHT~~VTCv 253 (480)
T KOG0271|consen 177 KDGSIR--LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-SGHTASVTCV 253 (480)
T ss_pred cCCeEE--EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-ccCccceEEE
Confidence 776543 455333 345677888888887666644 4344556667899999999988766652 3444567778
Q ss_pred EEecCCCCCccEEEEEeecCccee----eeeeeeccCCce---eEEEecc-------------cc-cchh----------
Q 004141 246 VWAPLNEGLHQYLVFVGWSSETRK----LGIKYCYNRPCA---LYAVRVS-------------LY-KSEA---------- 294 (771)
Q Consensus 246 ~wspDg~~~~~~l~~~~~~~~~~~----~g~~~~~~~~~~---l~~~d~~-------------~~-~~~~---------- 294 (771)
.|- |.. ++|++..+..-| ..-..|..-.++ |=.+++. +. ++..
T Consensus 254 rwG--G~g----liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 254 RWG--GEG----LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred EEc--CCc----eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 885 344 777764433111 000000000000 0011111 00 0000
Q ss_pred hhhhhhcC------------------CCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004141 295 SELELKES------------------SSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 295 ~~~~~~~~------------------~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
++.-.++. ........+++.+..-+..+.|||||++||-.+-+. .+.+|+-
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk-----------SVkLW~g 396 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK-----------SVKLWDG 396 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc-----------ceeeeeC
Confidence 00000000 011223456777777789999999999999988775 3777777
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-CCCCc
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AESNF 435 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-~~~~~ 435 (771)
.+|+.... |.| +...++.++||.|++ |+++.+.+....+|.+. +.++..=.+ ....+
T Consensus 397 ~tGk~las------------------fRG-Hv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~--tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 397 RTGKFLAS------------------FRG-HVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVR--TKKLKQDLPGHADEV 454 (480)
T ss_pred CCcchhhh------------------hhh-ccceeEEEEeccCcc-EEEEcCCCceEEEEEee--eeeecccCCCCCceE
Confidence 77665221 222 112356889999986 77787777777777554 566554333 33455
Q ss_pred eeeEEeecCCEEE
Q 004141 436 SWSLLTLDGDNII 448 (771)
Q Consensus 436 ~~~~~s~dg~~l~ 448 (771)
....|+|||..++
T Consensus 455 f~vDwspDG~rV~ 467 (480)
T KOG0271|consen 455 FAVDWSPDGQRVA 467 (480)
T ss_pred EEEEecCCCceee
Confidence 6678999998775
No 75
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.66 E-value=6.5e-15 Score=156.51 Aligned_cols=219 Identities=15% Similarity=0.240 Sum_probs=128.9
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+... .. .....+++.+.+..+++. ...+
T Consensus 88 gp~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G---~G~S~~~---~~-~~~~~~~~a~~l~~~l~~--l~~~ 155 (360)
T PLN02679 88 GPPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLG---FGASDKP---PG-FSYTMETWAELILDFLEE--VVQK 155 (360)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCC---CCCCCCC---CC-ccccHHHHHHHHHHHHHH--hcCC
Confidence 3789999997655 4467777877765 79999999999 5554221 01 112344444444333333 2346
Q ss_pred eEEEEEcChhHHHHHHHHh-hCCCceeEEEecCCccchhhhhcCCC------CC-cchh-------------hhhcc-CC
Q 004141 617 KVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTD------IP-DWCY-------------VESYG-SK 674 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~-~~p~~~~~~v~~~p~~~~~~~~~~~~------~~-~~~~-------------~~~~~-~~ 674 (771)
++.|+||||||.+++.++. .+|++++++|+.++............ .+ .|.+ ..... ..
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRD 235 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHH
Confidence 8999999999999998886 46999999998886532110000000 00 0000 00000 00
Q ss_pred CC-----ccCCC-----------------CCC-hhhHHHHhh----cCcccccCCCCCcEEEEeeCCCCccCcHHH-HHH
Q 004141 675 GK-----DSFTE-----------------SPS-VEDLTRFHS----KSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQY 726 (771)
Q Consensus 675 ~~-----~~~~~-----------------~~~-~~~~~~~~~----~sp~~~~~~i~~P~lii~G~~D~~vp~~~~-~~~ 726 (771)
.. ..+.. .+. ......+.. .+....+.++++|+|+++|++|..+|++.. .++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~ 315 (360)
T PLN02679 236 NLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKY 315 (360)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHH
Confidence 00 00000 000 000011111 111234678899999999999999998743 234
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 727 ARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++.+.+.-.+.++++++++||.... +...++.+.+.+||++
T Consensus 316 ~~~l~~~ip~~~l~~i~~aGH~~~~-E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 316 FSSLPSQLPNVTLYVLEGVGHCPHD-DRPDLVHEKLLPWLAQ 356 (360)
T ss_pred HHhhhccCCceEEEEcCCCCCCccc-cCHHHHHHHHHHHHHh
Confidence 4455444445899999999998664 4466888999999976
No 76
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.65 E-value=5.7e-16 Score=152.29 Aligned_cols=189 Identities=22% Similarity=0.309 Sum_probs=123.1
Q ss_pred EEEEcCCCCCCCCCc-chHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc---CCCC
Q 004141 540 IVVLHGGPHSVSLSS-YSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM---GLAN 614 (771)
Q Consensus 540 vv~~HGg~~~~~~~~-~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d 614 (771)
||++|||++...... ....+..+++ .|+.|+.+|||-+++. .....++|+.++++|+.++ ..+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~-----------~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEA-----------PFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTS-----------STTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccccc-----------cccccccccccceeeecccccccccc
Confidence 799999998765443 3345666664 9999999999975542 3345689999999999987 3478
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCC----CceeEEEecCCccchhhhhcCCCCCcchhhhhccC-CCC---------ccCC
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS-KGK---------DSFT 680 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p----~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~ 680 (771)
+++|+|+|+|.||.+++.++.... ..++++++.+|+.++... ....+........ ... ..+.
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDF----DGPSYDDSNENKDDPFLPAPKIDWFWKLYL 145 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTS----SCHHHHHHHHHSTTSSSBHHHHHHHHHHHH
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhc----cccccccccccccccccccccccccccccc
Confidence 999999999999999999987432 248999999998765100 0000000000000 000 0000
Q ss_pred CCCChhhHHHHhhcCcccccCCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 681 ESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 681 ~~~~~~~~~~~~~~sp~~~~~~i--~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
. .........+|+.. ..+ -+|++|++|+.|..+ .++..|+++|++.|++++++++++..|.+.
T Consensus 146 ~----~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 146 P----GSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp S----TGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred c----cccccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 0 00001123455544 123 368999999999887 688999999999999999999999999863
No 77
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.65 E-value=4.7e-15 Score=152.78 Aligned_cols=215 Identities=13% Similarity=0.104 Sum_probs=129.5
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+.... .....++++.+.+..+++.. +.
T Consensus 27 ~~~~vv~~hG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G---~G~S~~~~----~~~~~~~~~~~~l~~~i~~~--~~ 94 (278)
T TIGR03056 27 AGPLLLLLHGTGAS--THSWRDLMPPLAR-SFRVVAPDLPG---HGFTRAPF----RFRFTLPSMAEDLSALCAAE--GL 94 (278)
T ss_pred CCCeEEEEcCCCCC--HHHHHHHHHHHhh-CcEEEeecCCC---CCCCCCcc----ccCCCHHHHHHHHHHHHHHc--CC
Confidence 34889999997654 3456677777754 69999999999 45432111 11234566666666665542 34
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh---------h---cCCCCCcchhhh-hccCCCCccCC--
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------V---GTTDIPDWCYVE-SYGSKGKDSFT-- 680 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~---------~---~~~~~~~~~~~~-~~~~~~~~~~~-- 680 (771)
++++|+||||||.+++.++.++|++++++|+.++......- . ............ .........+.
T Consensus 95 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (278)
T TIGR03056 95 SPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRD 174 (278)
T ss_pred CCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhc
Confidence 67899999999999999999999999988887765421100 0 000000000000 00000000000
Q ss_pred --CCCChhhH-----------------HHHhhcC---cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004141 681 --ESPSVEDL-----------------TRFHSKS---PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 681 --~~~~~~~~-----------------~~~~~~s---p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
........ ....... ....+.++++|+|+++|++|..+|++..+.+.+.+.. ++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~~----~~ 250 (278)
T TIGR03056 175 TGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVPT----AT 250 (278)
T ss_pred cccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhccC----Ce
Confidence 00000000 0000000 1124567889999999999999999888887766543 68
Q ss_pred EEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 739 VIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 739 ~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+..++++||.+.... ..++.+.|.+|++
T Consensus 251 ~~~~~~~gH~~~~e~-p~~~~~~i~~f~~ 278 (278)
T TIGR03056 251 LHVVPGGGHLVHEEQ-ADGVVGLILQAAE 278 (278)
T ss_pred EEEECCCCCcccccC-HHHHHHHHHHHhC
Confidence 889999999876543 5578888888873
No 78
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.65 E-value=1.5e-15 Score=154.97 Aligned_cols=238 Identities=13% Similarity=0.151 Sum_probs=140.0
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.+|..+.|+++.|.+ . +.+.||++|||+.... ...+...++.|+++||.|+++|+|| +|.+... ... .
T Consensus 9 ~~~~~l~g~~~~p~~---~-~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G---~G~S~~~--~~~-~ 78 (274)
T TIGR03100 9 CEGETLVGVLHIPGA---S-HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRG---MGDSEGE--NLG-F 78 (274)
T ss_pred cCCcEEEEEEEcCCC---C-CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCC---CCCCCCC--CCC-H
Confidence 457889999999863 2 2356777787654321 2234556788999999999999999 5543211 011 1
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
....+|+.++++++.++.. ..++|+++|||+||.+++.++.. +..++++|+.+|............. ...+......
T Consensus 79 ~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~-~~~~~~~~~~ 155 (274)
T TIGR03100 79 EGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRI-RHYYLGQLLS 155 (274)
T ss_pred HHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHH-HHHHHHHHhC
Confidence 1235789999999876521 23679999999999999988765 5689999999987431110000000 0000000000
Q ss_pred -CCCcc-CCCCCChh-hHHHHhh----c---C-----------cccccCCCCCcEEEEeeCCCCccCcHHH-----HHHH
Q 004141 674 -KGKDS-FTESPSVE-DLTRFHS----K---S-----------PISHISKVKTPTIFLLGAQDLRVPVSNG-----LQYA 727 (771)
Q Consensus 674 -~~~~~-~~~~~~~~-~~~~~~~----~---s-----------p~~~~~~i~~P~lii~G~~D~~vp~~~~-----~~~~ 727 (771)
..... ..+..... ....+.. . . -...+.++++|+|+++|+.|...+.... ..+.
T Consensus 156 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~~~~~~~~~~~ 235 (274)
T TIGR03100 156 ADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFADSVLGEPAWR 235 (274)
T ss_pred hHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHHHHhccChhhH
Confidence 00000 00000000 0000000 0 0 0123456789999999999987531110 2222
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+.+.. ..+++..+++++|.+.......++...|.+||++
T Consensus 236 ~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 236 GALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 22321 3588999999999887777777899999999963
No 79
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.63 E-value=3.2e-15 Score=153.35 Aligned_cols=226 Identities=17% Similarity=0.195 Sum_probs=132.1
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
|.+|.|+++.|+ .+++.|+||++-| ..+ ....+.. ....|+.+|++++++|.+|.+ .+....+..+ .
T Consensus 174 g~~I~g~LhlP~---~~~p~P~VIv~gG-lDs-~qeD~~~l~~~~l~~rGiA~LtvDmPG~G---~s~~~~l~~D----~ 241 (411)
T PF06500_consen 174 GKTIPGYLHLPS---GEKPYPTVIVCGG-LDS-LQEDLYRLFRDYLAPRGIAMLTVDMPGQG---ESPKWPLTQD----S 241 (411)
T ss_dssp TCEEEEEEEESS---SSS-EEEEEEE---TTS--GGGGHHHHHCCCHHCT-EEEEE--TTSG---GGTTT-S-S-----C
T ss_pred CcEEEEEEEcCC---CCCCCCEEEEeCC-cch-hHHHHHHHHHHHHHhCCCEEEEEccCCCc---ccccCCCCcC----H
Confidence 478999999998 6788898887755 322 2333333 345688999999999999944 3322111111 1
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh--hcCCCCCcchhhhhccCC
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--VGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~ 674 (771)
-.-..++++||...+.+|..||+++|.|+||++|..+|..++++++++|+.+|+++-... ......|. ++...+.
T Consensus 242 ~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~~~P~-my~d~LA-- 318 (411)
T PF06500_consen 242 SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQRVPD-MYLDVLA-- 318 (411)
T ss_dssp CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHTTS-H-HHHHHHH--
T ss_pred HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHhcCCH-HHHHHHH--
Confidence 223457789999999999999999999999999999998888999999999887542211 01111111 1111111
Q ss_pred CCccCCCCCC--hhh-HHHHhhcCccc--cc--CCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC-
Q 004141 675 GKDSFTESPS--VED-LTRFHSKSPIS--HI--SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV- 746 (771)
Q Consensus 675 ~~~~~~~~~~--~~~-~~~~~~~sp~~--~~--~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~- 746 (771)
...+... .+. ...+...|-.. .+ .+.++|+|.+.|++|+++|.++.+.++. .+.+-+...++...
T Consensus 319 ---~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~----~s~~gk~~~~~~~~~ 391 (411)
T PF06500_consen 319 ---SRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAE----SSTDGKALRIPSKPL 391 (411)
T ss_dssp ---HHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHH----TBTT-EEEEE-SSSH
T ss_pred ---HHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHh----cCCCCceeecCCCcc
Confidence 1111111 111 12233444432 23 5677899999999999999988766543 23334556666544
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhh
Q 004141 747 HGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
|.-. ...+..+.+||++.|
T Consensus 392 ~~gy-----~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 392 HMGY-----PQALDEIYKWLEDKL 410 (411)
T ss_dssp HHHH-----HHHHHHHHHHHHHHH
T ss_pred ccch-----HHHHHHHHHHHHHhc
Confidence 5322 477889999999876
No 80
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.63 E-value=1.9e-14 Score=140.54 Aligned_cols=241 Identities=16% Similarity=0.147 Sum_probs=147.1
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
++|..+...+..++ ...+.|.||.+||-.++..+......+..+.++||.|+++|.||+++.-.. .+.-+-..
T Consensus 57 pdg~~~~ldw~~~p---~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p~~yh~G 129 (345)
T COG0429 57 PDGGFIDLDWSEDP---RAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANT----SPRLYHSG 129 (345)
T ss_pred CCCCEEEEeeccCc---cccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCccc----Ccceeccc
Confidence 34444444444432 345669999999966665455445577788999999999999997653221 12222233
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhH-HHHHHHHhhCCC-ceeEEEecCCccchhhhhcCCCCCcc-hh-----
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG-FLTTHLIGQAPD-KFVAAAARNPLCNLALMVGTTDIPDW-CY----- 667 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG-~~a~~~a~~~p~-~~~~~v~~~p~~~~~~~~~~~~~~~~-~~----- 667 (771)
..+|+..+++++.++. -+.++..+|.|+|| +++.+++.+..+ .+.+++..+-..|+.......+...+ ..
T Consensus 130 ~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~s~~ly~r~l 207 (345)
T COG0429 130 ETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFSLRLYSRYL 207 (345)
T ss_pred chhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCchhhhhhHHHH
Confidence 4699999999998864 36789999999999 555555443222 23444444433333111100000000 00
Q ss_pred --------------------------------hhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCC
Q 004141 668 --------------------------------VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 668 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D 715 (771)
...+.........+. .+..+.|.+.|.+..+.+|++|+||||..+|
T Consensus 208 ~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf--~da~dYYr~aSs~~~L~~Ir~PtLii~A~DD 285 (345)
T COG0429 208 LRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGF--ADAEDYYRQASSLPLLPKIRKPTLIINAKDD 285 (345)
T ss_pred HHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCC--CcHHHHHHhccccccccccccceEEEecCCC
Confidence 000111111112222 2445678899999999999999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--CC-Ch-HHHHHHHHHHHHHhh
Q 004141 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER--PQ-SD-FESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~--~~-~~-~~~~~~i~~fl~~~L 770 (771)
++++++..-..... ....+.+...+-+||.-.. .. +. .-..+++.+||+.++
T Consensus 286 P~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 286 PFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred CCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 99987654433222 4556889999999995322 11 11 134568999999876
No 81
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.63 E-value=6.2e-15 Score=144.79 Aligned_cols=191 Identities=18% Similarity=0.206 Sum_probs=113.2
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCC---CCCCh---hhhhcCCCCc-cccchhhHH---
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGS---LGFGE---EALQSLPGKV-GSQDVNDVL--- 601 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~Vv~~d~rG~---~~~g~---~~~~~~~~~~-~~~~~~D~~--- 601 (771)
..+..|+||++||.+.+. ..+..... .+......++.++-+.. ...|. +|........ ...+.+++.
T Consensus 10 ~~~~~~lvi~LHG~G~~~--~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~ 87 (216)
T PF02230_consen 10 KGKAKPLVILLHGYGDSE--DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESA 87 (216)
T ss_dssp SST-SEEEEEE--TTS-H--HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHH
T ss_pred CCCCceEEEEECCCCCCc--chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHH
Confidence 456789999999965542 12222222 12235677777764310 11222 4432211111 111233333
Q ss_pred ----HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCc
Q 004141 602 ----TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 602 ----~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
+.|+...+. .++++||+|.|+|.||.+++.++.++|..++++|+.++.......
T Consensus 88 ~~l~~li~~~~~~-~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------------------- 145 (216)
T PF02230_consen 88 ERLDELIDEEVAY-GIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------------------- 145 (216)
T ss_dssp HHHHHHHHHHHHT-T--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC---------------------
T ss_pred HHHHHHHHHHHHc-CCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc---------------------
Confidence 223333333 389999999999999999999999999999999999886421100
Q ss_pred cCCCCCChhhHHHHhhcCcccccCC-CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChH
Q 004141 678 SFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~-i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 756 (771)
....... -++|++++||..|+++|.+.++..++.|++.+.++++..|++.||.+. .
T Consensus 146 ------------------~~~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~ 202 (216)
T PF02230_consen 146 ------------------LEDRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----P 202 (216)
T ss_dssp ------------------CHCCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------H
T ss_pred ------------------ccccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----H
Confidence 0000011 158999999999999999999999999999999999999999999885 5
Q ss_pred HHHHHHHHHHHHhh
Q 004141 757 ESFLNIGLWFKKYC 770 (771)
Q Consensus 757 ~~~~~i~~fl~~~L 770 (771)
+.+..+.+||++++
T Consensus 203 ~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 203 EELRDLREFLEKHI 216 (216)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhC
Confidence 77889999999874
No 82
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.63 E-value=1.3e-15 Score=155.39 Aligned_cols=222 Identities=18% Similarity=0.221 Sum_probs=140.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---------HHHHHHHCCcEEEEECCCCCCCCChhhhhc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---------SLAFLSSVGYSLLIVNYRGSLGFGEEALQS 587 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---------~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~ 587 (771)
||.+|.+.+|+| +....++.|+||..|+-+.... ..... ....|+++||+||.+|.||.++++..+..
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~-~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~- 77 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTPYGKGDQ-TASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDP- 77 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEESSTCTC--HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-T-
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccCcCCCCC-cccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcccc-
Confidence 689999999999 4447889999999998442210 00000 11238999999999999998777665432
Q ss_pred CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-hhcCCC---C-
Q 004141 588 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTD---I- 662 (771)
Q Consensus 588 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-~~~~~~---~- 662 (771)
....+.+|..++|+|+.++++. ..||+++|.|++|+.++.+|...|..++|++...+..++.. ...... .
T Consensus 78 ----~~~~e~~D~~d~I~W~~~Qpws-~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~ 152 (272)
T PF02129_consen 78 ----MSPNEAQDGYDTIEWIAAQPWS-NGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLG 152 (272)
T ss_dssp ----TSHHHHHHHHHHHHHHHHCTTE-EEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCC
T ss_pred ----CChhHHHHHHHHHHHHHhCCCC-CCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCccccc
Confidence 1566799999999999999765 47999999999999999999988889999999888777643 111000 0
Q ss_pred --Ccch----hhhhccCCCC--------------------ccCCCCC--------ChhhHHHHhhcCcccccCCCCCcEE
Q 004141 663 --PDWC----YVESYGSKGK--------------------DSFTESP--------SVEDLTRFHSKSPISHISKVKTPTI 708 (771)
Q Consensus 663 --~~~~----~~~~~~~~~~--------------------~~~~~~~--------~~~~~~~~~~~sp~~~~~~i~~P~l 708 (771)
..|. .......... ....... .......+.+.++...+.++++|+|
T Consensus 153 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l 232 (272)
T PF02129_consen 153 FFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVL 232 (272)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEE
T ss_pred chhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEE
Confidence 1120 0000000000 0000000 0001122334444455789999999
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCC-CCEEEEEeCCCCcc
Q 004141 709 FLLGAQDLRVPVSNGLQYARALREKG-VETKVIVFPNDVHG 748 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~ 748 (771)
++.|-.|..+. ..+.+.+++|+..+ .+.++++-|. +|+
T Consensus 233 ~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 233 IVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred EecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999997766 88899999999988 6778887765 674
No 83
>PRK11071 esterase YqiA; Provisional
Probab=99.63 E-value=1.3e-14 Score=138.39 Aligned_cols=182 Identities=14% Similarity=0.096 Sum_probs=115.9
Q ss_pred cEEEEEcCCCCCCCCCcch--HHHHHHHH--CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 538 PLIVVLHGGPHSVSLSSYS--KSLAFLSS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~--~~~~~la~--~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
|.||++||.+.+. ..|. .....+.+ .+|.|+++|++| ++ +++.+.+..++++.
T Consensus 2 p~illlHGf~ss~--~~~~~~~~~~~l~~~~~~~~v~~~dl~g---~~----------------~~~~~~l~~l~~~~-- 58 (190)
T PRK11071 2 STLLYLHGFNSSP--RSAKATLLKNWLAQHHPDIEMIVPQLPP---YP----------------ADAAELLESLVLEH-- 58 (190)
T ss_pred CeEEEECCCCCCc--chHHHHHHHHHHHHhCCCCeEEeCCCCC---CH----------------HHHHHHHHHHHHHc--
Confidence 6799999976653 3344 23355554 379999999998 32 23445555555542
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-hhcCCCC-CcchhhhhccCCCCccCCCCCChhhHHHH
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDI-PDWCYVESYGSKGKDSFTESPSVEDLTRF 691 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (771)
+.+++.++|+|+||++++.++.++|. + +|+.+|..+... ....... .... .. ..+. .........
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~--~~~~~~~d~ 125 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPY-----TG---QQYV--LESRHIYDL 125 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCccccc-----CC---CcEE--EcHHHHHHH
Confidence 34689999999999999999999883 3 467777766311 1100000 0000 00 0000 011222223
Q ss_pred hhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 692 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 692 ~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
....+.. +. ..+|++++||++|+.||++.+.++++. +++++++|++|.+... .+.++.+.+|+.
T Consensus 126 ~~~~~~~-i~-~~~~v~iihg~~De~V~~~~a~~~~~~-------~~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 126 KVMQIDP-LE-SPDLIWLLQQTGDEVLDYRQAVAYYAA-------CRQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred HhcCCcc-CC-ChhhEEEEEeCCCCcCCHHHHHHHHHh-------cceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 3233322 33 667899999999999999999999884 3566789999998544 578888999875
No 84
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.63 E-value=1.9e-14 Score=154.50 Aligned_cols=222 Identities=18% Similarity=0.233 Sum_probs=126.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc-cchh-hHHHHHHHHHHcCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS-QDVN-DVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~-~~~~-D~~~~i~~l~~~~~ 612 (771)
+..|+||++||.+.. ...|...+..|++ +|.|+++|+||. |.+.... ..... .... .+.+.+..+++.
T Consensus 103 ~~~p~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~rG~---G~S~~~~--~~~~~~~~~~~~~~~~i~~~~~~-- 172 (402)
T PLN02894 103 EDAPTLVMVHGYGAS--QGFFFRNFDALAS-RFRVIAIDQLGW---GGSSRPD--FTCKSTEETEAWFIDSFEEWRKA-- 172 (402)
T ss_pred CCCCEEEEECCCCcc--hhHHHHHHHHHHh-CCEEEEECCCCC---CCCCCCC--cccccHHHHHHHHHHHHHHHHHH--
Confidence 356899999997654 3355566777765 599999999994 4432111 01110 1111 222333333332
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc----CCC-CCcch---------------------
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTD-IPDWC--------------------- 666 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~----~~~-~~~~~--------------------- 666 (771)
.+.+++.|+||||||++++.++.++|+.++++|+.+|......... ... ...|.
T Consensus 173 l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 252 (402)
T PLN02894 173 KNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKIIRGL 252 (402)
T ss_pred cCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHHHhc
Confidence 2456899999999999999999999999999998887531100000 000 00000
Q ss_pred ------hhhhccCCCC-ccCCC--CC--ChhhHH-----------------HHh------hcCcc-cccCCCCCcEEEEe
Q 004141 667 ------YVESYGSKGK-DSFTE--SP--SVEDLT-----------------RFH------SKSPI-SHISKVKTPTIFLL 711 (771)
Q Consensus 667 ------~~~~~~~~~~-~~~~~--~~--~~~~~~-----------------~~~------~~sp~-~~~~~i~~P~lii~ 711 (771)
+...+..... ..... .. ...... .+. ...+. ..+.++++|+++++
T Consensus 253 gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI~ 332 (402)
T PLN02894 253 GPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFIY 332 (402)
T ss_pred cchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEEE
Confidence 0000000000 00000 00 000000 000 11222 34678899999999
Q ss_pred eCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 712 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 712 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
|++|.+.+ ....++.+.+ +.++++++++++||..... ....+.+.+.+|++.+|+
T Consensus 333 G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~~~E-~P~~f~~~l~~~~~~~~~ 387 (402)
T PLN02894 333 GRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFVFLD-NPSGFHSAVLYACRKYLS 387 (402)
T ss_pred eCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCeeecc-CHHHHHHHHHHHHHHhcc
Confidence 99998664 5555544433 3357899999999976644 455888999999988763
No 85
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.62 E-value=1.3e-14 Score=150.09 Aligned_cols=218 Identities=16% Similarity=0.221 Sum_probs=125.3
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|.||++||++++.. ..+......+.+.||.|+++|+|| +|.+...... .....++++.+.+..+++. .+.
T Consensus 24 ~~~~vl~~hG~~g~~~-~~~~~~~~~l~~~g~~vi~~d~~G---~G~s~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~ 95 (288)
T TIGR01250 24 EKIKLLLLHGGPGMSH-EYLENLRELLKEEGREVIMYDQLG---CGYSDQPDDS--DELWTIDYFVDELEEVREK--LGL 95 (288)
T ss_pred CCCeEEEEcCCCCccH-HHHHHHHHHHHhcCCEEEEEcCCC---CCCCCCCCcc--cccccHHHHHHHHHHHHHH--cCC
Confidence 3578999999765531 223344445555699999999999 4443211100 0012355666666555555 345
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc-----CCCCCc-ch-hhhhccCCC----------Ccc
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----TTDIPD-WC-YVESYGSKG----------KDS 678 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-----~~~~~~-~~-~~~~~~~~~----------~~~ 678 (771)
+++.++||||||.+++.++..+|++++++|+.+++........ ....+. .. ......... ...
T Consensus 96 ~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (288)
T TIGR01250 96 DKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQEAVEV 175 (288)
T ss_pred CcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 6799999999999999999999999999998877543211100 000000 00 000000000 000
Q ss_pred C------CCCCChhhHHH------------------------HhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHH
Q 004141 679 F------TESPSVEDLTR------------------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728 (771)
Q Consensus 679 ~------~~~~~~~~~~~------------------------~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~ 728 (771)
+ ........... +........+.++++|+|+++|++|.. +++....+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~-~~~~~~~~~~ 254 (288)
T TIGR01250 176 FYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDTM-TPEAAREMQE 254 (288)
T ss_pred HHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCcc-CHHHHHHHHH
Confidence 0 00000000000 000111234567899999999999984 5666666665
Q ss_pred HHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 729 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
.+. .+++++++++||..... ...++.+.+.+||+
T Consensus 255 ~~~----~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 255 LIA----GSRLVVFPDGSHMTMIE-DPEVYFKLLSDFIR 288 (288)
T ss_pred hcc----CCeEEEeCCCCCCcccC-CHHHHHHHHHHHhC
Confidence 553 36788999999987654 45577888888873
No 86
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.62 E-value=2.8e-14 Score=151.06 Aligned_cols=262 Identities=18% Similarity=0.187 Sum_probs=166.1
Q ss_pred CCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 107 SPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 107 SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
||||++++|..+... ....+++.+ ..++.+++....... ..+.|||||++|||+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~----------~~~~~sP~g~~~~~v~--------- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKL----------QDAKWSPDGKYIAFVR--------- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTB----------SEEEE-SSSTEEEEEE---------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcccc----------ccceeecCCCeeEEEe---------
Confidence 899999999765421 223455555 444444433321122 6899999999999983
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---------------C--Cccc
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---------------S--LSVG 243 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---------------~--~~~~ 243 (771)
..+||+.++.+++.++|+ ..+ + ....
T Consensus 62 ------------------------------------~~nly~~~~~~~~~~~lT-~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 62 ------------------------------------DNNLYLRDLATGQETQLT-TDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp ------------------------------------TTEEEEESSTTSEEEESE-S--TTTEEESB--HHHHHHTSSSSB
T ss_pred ------------------------------------cCceEEEECCCCCeEEec-cccceeEEcCccceecccccccccc
Confidence 368999999888888885 111 0 1234
Q ss_pred eEEEecCCCCCccEEEEEeecCcc-e----------------eeeeeeec----cCCceeEEEecccccchhhhhhhhcC
Q 004141 244 QVVWAPLNEGLHQYLVFVGWSSET-R----------------KLGIKYCY----NRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~-~----------------~~g~~~~~----~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
.+.|||||++ |+|....... . ..-+.|+. |....|+++++
T Consensus 105 ~~~WSpd~~~----la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~--------------- 165 (353)
T PF00930_consen 105 AVWWSPDSKY----LAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL--------------- 165 (353)
T ss_dssp SEEE-TTSSE----EEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES---------------
T ss_pred ceEECCCCCE----EEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC---------------
Confidence 6789999999 9998754431 1 11122211 22346888887
Q ss_pred CCCCCcceecC------CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004141 303 SSEDLPVVNLT------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 303 ~~~~~~~~~lt------~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
++++...+. ........+.|++|++.|++...... .....|.++|..++..+.+....
T Consensus 166 --~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~------q~~~~l~~~d~~tg~~~~~~~e~-------- 229 (353)
T PF00930_consen 166 --ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD------QNRLDLVLCDASTGETRVVLEET-------- 229 (353)
T ss_dssp --SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT------STEEEEEEEEECTTTCEEEEEEE--------
T ss_pred --CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC------CCEEEEEEEECCCCceeEEEEec--------
Confidence 666554333 23445788999999997777666542 44677889999886654332111
Q ss_pred ccCCCCCcccccCCCCCCccc-cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCc-eeeEEeecCCEEEEEEeCC
Q 004141 377 CAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF-SWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s-~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~-~~~~~s~dg~~l~~~~~~~ 454 (771)
... |-.....+.|. +++..+++.+..+|..+||.++.+++..++||.+...+ ....++.+++.|+|.+...
T Consensus 230 ---~~~----Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 230 ---SDG----WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp ---SSS----SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred ---CCc----ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCC
Confidence 010 11112234444 88888999888889999999999999999999887755 4567889999999999763
Q ss_pred C-CCCeEEEEEec
Q 004141 455 V-DVPQVKYGYFV 466 (771)
Q Consensus 455 ~-~p~~l~~~~~~ 466 (771)
+ .-..||++++.
T Consensus 303 ~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 303 NPGERHLYRVSLD 315 (353)
T ss_dssp GTTSBEEEEEETT
T ss_pred CCCceEEEEEEeC
Confidence 3 33457777766
No 87
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.61 E-value=1.3e-14 Score=146.49 Aligned_cols=212 Identities=15% Similarity=0.202 Sum_probs=125.1
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHH-HHHHHHcCCCCCC
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 616 (771)
|+||++||.+.. ...|...+..|+ .||.|+++|+||. |.+.. +......+.+++... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~~--~~~~~~~~~~L~-~~~~v~~~d~~g~---G~s~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGS--GADWQALIELLG-PHFRCLAIDLPGH---GSSQS---PDEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCc--hhhHHHHHHHhc-ccCeEEEEcCCCC---CCCCC---CCccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 789999997655 446777888887 8999999999994 44321 111122345555554 5555554 3467
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc----CCCCCcch----------hhhhccC-CCCccCCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTDIPDWC----------YVESYGS-KGKDSFTE 681 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~----~~~~~~~~----------~~~~~~~-~~~~~~~~ 681 (771)
++.++|||+||.+++.++.++|+.++++++.++......... ......+. +...+.. ........
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLFASQKN 150 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCceeeeccc
Confidence 899999999999999999999999999998887543211000 00000000 0000000 00000000
Q ss_pred CCCh---------------hhHHHHh------hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004141 682 SPSV---------------EDLTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 682 ~~~~---------------~~~~~~~------~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
.+.. .....+. ..+....+.++++|+|+++|++|..++ +.. +.+.+...+++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~~----~~~~~~~~~~~~~ 225 (251)
T TIGR03695 151 LPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QIA----KEMQKLLPNLTLV 225 (251)
T ss_pred CChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HHH----HHHHhcCCCCcEE
Confidence 0000 0000000 112223456789999999999998763 222 3344444457889
Q ss_pred EeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 741 VFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 741 ~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
.++++||.+.... ...+...+.+||
T Consensus 226 ~~~~~gH~~~~e~-~~~~~~~i~~~l 250 (251)
T TIGR03695 226 IIANAGHNIHLEN-PEAFAKILLAFL 250 (251)
T ss_pred EEcCCCCCcCccC-hHHHHHHHHHHh
Confidence 9999999876544 346777777776
No 88
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.60 E-value=6.4e-15 Score=148.34 Aligned_cols=207 Identities=17% Similarity=0.219 Sum_probs=124.6
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.. ...|...+..|+ .+|.|+++|+|| +|.+.. ....+++++ ++.+.+.. .+
T Consensus 4 ~~~iv~~HG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G---~G~s~~------~~~~~~~~~---~~~~~~~~---~~ 65 (245)
T TIGR01738 4 NVHLVLIHGWGMN--AEVFRCLDEELS-AHFTLHLVDLPG---HGRSRG------FGPLSLADA---AEAIAAQA---PD 65 (245)
T ss_pred CceEEEEcCCCCc--hhhHHHHHHhhc-cCeEEEEecCCc---CccCCC------CCCcCHHHH---HHHHHHhC---CC
Confidence 3779999997655 446777777775 579999999999 444321 111233444 34444332 36
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC-CC------------C-cch-hhhh------ccCCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-DI------------P-DWC-YVES------YGSKG 675 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~-~~------------~-~~~-~~~~------~~~~~ 675 (771)
++.++||||||.+++.++.++|++++++|+.++........... .. . .+. .... +....
T Consensus 66 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (245)
T TIGR01738 66 PAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPT 145 (245)
T ss_pred CeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc
Confidence 89999999999999999999999999999876643211000000 00 0 000 0000 00000
Q ss_pred Cc--------cCC--CCCChhh----HHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 676 KD--------SFT--ESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 676 ~~--------~~~--~~~~~~~----~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
.. .+. ..+.... ...+...+....+.++++|+|+++|++|..+|++..+.+.+.+. ++++.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~ 221 (245)
T TIGR01738 146 ARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYI 221 (245)
T ss_pred cchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEE
Confidence 00 000 0000000 00111112223467899999999999999999888777766654 478899
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHH
Q 004141 742 FPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
++++||..... ...++.+.+.+|+
T Consensus 222 ~~~~gH~~~~e-~p~~~~~~i~~fi 245 (245)
T TIGR01738 222 FAKAAHAPFLS-HAEAFCALLVAFK 245 (245)
T ss_pred eCCCCCCcccc-CHHHHHHHHHhhC
Confidence 99999987654 4557777787774
No 89
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.59 E-value=7.6e-14 Score=145.35 Aligned_cols=229 Identities=19% Similarity=0.226 Sum_probs=133.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.+++...+.+ ...+.||++||++.... .......+...+|.|+++|+|| +|.+.... ......
T Consensus 13 ~~~~l~y~~~g~------~~~~~lvllHG~~~~~~---~~~~~~~~~~~~~~vi~~D~~G---~G~S~~~~---~~~~~~ 77 (306)
T TIGR01249 13 DNHQLYYEQSGN------PDGKPVVFLHGGPGSGT---DPGCRRFFDPETYRIVLFDQRG---CGKSTPHA---CLEENT 77 (306)
T ss_pred CCcEEEEEECcC------CCCCEEEEECCCCCCCC---CHHHHhccCccCCEEEEECCCC---CCCCCCCC---CcccCC
Confidence 466676544321 12356899999876532 2233344556789999999999 55543211 111223
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh----hh--cCC----------
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----MV--GTT---------- 660 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~----~~--~~~---------- 660 (771)
.+++.+.+..+.+. ++.+++.++||||||.+++.++.++|++++++|+.++...... .. +..
T Consensus 78 ~~~~~~dl~~l~~~--l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (306)
T TIGR01249 78 TWDLVADIEKLREK--LGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGGASMIYPDAWQRF 155 (306)
T ss_pred HHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcchhhhCHHHHHHH
Confidence 55666666666665 2456899999999999999999999999999888776432100 00 000
Q ss_pred --CCC-cc---hhhhh----ccCC------------------CCccCCCC-C----ChhhHHHHhh----------cC--
Q 004141 661 --DIP-DW---CYVES----YGSK------------------GKDSFTES-P----SVEDLTRFHS----------KS-- 695 (771)
Q Consensus 661 --~~~-~~---~~~~~----~~~~------------------~~~~~~~~-~----~~~~~~~~~~----------~s-- 695 (771)
..+ .. .+... +... ........ . .......+.. ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (306)
T TIGR01249 156 MDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLENHYFVNKGFLDV 235 (306)
T ss_pred hhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHHHhHHHHhchhcC
Confidence 000 00 00000 0000 00000000 0 0000000000 00
Q ss_pred ---cccccCCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 696 ---PISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 696 ---p~~~~~~i-~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
-...+.++ ++|+|++||++|..+|++.++++++.+.. .++++++++||.... ....+.+.+|+..+|
T Consensus 236 ~~~~~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~~----~~~~~~~~~gH~~~~----~~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 236 ENFILDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFPE----AELKVTNNAGHSAFD----PNNLAALVHALETYL 306 (306)
T ss_pred chHHHHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhCCC----CEEEEECCCCCCCCC----hHHHHHHHHHHHHhC
Confidence 11234566 58999999999999999998888877643 688899999998752 345688888888765
No 90
>PRK06489 hypothetical protein; Provisional
Probab=99.59 E-value=1.8e-14 Score=153.54 Aligned_cols=221 Identities=19% Similarity=0.250 Sum_probs=125.9
Q ss_pred CcEEEEEcCCCCCCCCCcch--HHHHHH-------HHCCcEEEEECCCCCCCCChhhhhcCC--CCccccchhhHHHHH-
Q 004141 537 DPLIVVLHGGPHSVSLSSYS--KSLAFL-------SSVGYSLLIVNYRGSLGFGEEALQSLP--GKVGSQDVNDVLTAI- 604 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~--~~~~~l-------a~~G~~Vv~~d~rG~~~~g~~~~~~~~--~~~~~~~~~D~~~~i- 604 (771)
.|.||++||++.+.. .|. .....| ...+|.|+++|+|| +|.+...... .......++++.+.+
T Consensus 69 gpplvllHG~~~~~~--~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~G---hG~S~~p~~~~~~~~~~~~~~~~a~~~~ 143 (360)
T PRK06489 69 DNAVLVLHGTGGSGK--SFLSPTFAGELFGPGQPLDASKYFIILPDGIG---HGKSSKPSDGLRAAFPRYDYDDMVEAQY 143 (360)
T ss_pred CCeEEEeCCCCCchh--hhccchhHHHhcCCCCcccccCCEEEEeCCCC---CCCCCCCCcCCCCCCCcccHHHHHHHHH
Confidence 578999999776532 232 222222 25689999999999 5544211100 001123455655443
Q ss_pred HHHHHcCCCCCCeEE-EEEcChhHHHHHHHHhhCCCceeEEEecCCccch--------hhh-h-cCCCCCcc--------
Q 004141 605 DHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL--------ALM-V-GTTDIPDW-------- 665 (771)
Q Consensus 605 ~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~--------~~~-~-~~~~~~~~-------- 665 (771)
..+.+. .+.+++. |+||||||++++.++.++|++++++|+.++.... ... . .......+
T Consensus 144 ~~l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (360)
T PRK06489 144 RLVTEG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQ 221 (360)
T ss_pred HHHHHh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 334343 2345675 8999999999999999999999999988764210 000 0 00000000
Q ss_pred --h------hhhhccCCC-CccCCCCCC-------------------hhhH----HHHhhcCcccccCCCCCcEEEEeeC
Q 004141 666 --C------YVESYGSKG-KDSFTESPS-------------------VEDL----TRFHSKSPISHISKVKTPTIFLLGA 713 (771)
Q Consensus 666 --~------~~~~~~~~~-~~~~~~~~~-------------------~~~~----~~~~~~sp~~~~~~i~~P~lii~G~ 713 (771)
. ....+.... .......+. .... ......+....+.+|++|+|+++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~ 301 (360)
T PRK06489 222 PPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSA 301 (360)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecC
Confidence 0 000000000 000000000 0000 0001112234567899999999999
Q ss_pred CCCccCcHHH--HHHHHHHHhCCCCEEEEEeCCC----CccCCCCCChHHHHHHHHHHHHHhh
Q 004141 714 QDLRVPVSNG--LQYARALREKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 714 ~D~~vp~~~~--~~~~~~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+|..+|++.+ +.+.+.+.+ .+++++|++ ||... +....+.+.+.+||++.-
T Consensus 302 ~D~~~p~~~~~~~~la~~ip~----a~l~~i~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 302 DDERNPPETGVMEAALKRVKH----GRLVLIPASPETRGHGTT--GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred CCcccChhhHHHHHHHHhCcC----CeEEEECCCCCCCCcccc--cCHHHHHHHHHHHHHhcc
Confidence 9999998865 566665543 689999996 99874 466688888999998753
No 91
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.59 E-value=3.4e-14 Score=146.23 Aligned_cols=210 Identities=17% Similarity=0.250 Sum_probs=124.5
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.. ...|...+..|. ++|.|+++|+|| +|.+.. +.. .....+++.+.+..+++. .+.+
T Consensus 34 ~~~iv~lHG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G---~G~S~~---~~~-~~~~~~~~~~~~~~~~~~--~~~~ 101 (286)
T PRK03204 34 GPPILLCHGNPTW--SFLYRDIIVALR-DRFRCVAPDYLG---FGLSER---PSG-FGYQIDEHARVIGEFVDH--LGLD 101 (286)
T ss_pred CCEEEEECCCCcc--HHHHHHHHHHHh-CCcEEEEECCCC---CCCCCC---CCc-cccCHHHHHHHHHHHHHH--hCCC
Confidence 4789999997643 335666666764 569999999999 444321 111 123467777777777766 3457
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh------hh---hcCCCCCcch-----hhhhccCCCCccCCCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA------LM---VGTTDIPDWC-----YVESYGSKGKDSFTES 682 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~------~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 682 (771)
++.++||||||.++..++..+|++++++|+.++..... .+ .......... ....+... .....
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 178 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPA---GTEHR 178 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccc---cccCC
Confidence 89999999999999999999999999999877643110 00 0000000000 00000000 00000
Q ss_pred CChhhHHHHh--------------------hcCcc-cc----cC--CCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhCC
Q 004141 683 PSVEDLTRFH--------------------SKSPI-SH----IS--KVKTPTIFLLGAQDLRVPVSN-GLQYARALREKG 734 (771)
Q Consensus 683 ~~~~~~~~~~--------------------~~sp~-~~----~~--~i~~P~lii~G~~D~~vp~~~-~~~~~~~l~~~g 734 (771)
........+. ...+. .. +. .+++|+|+++|++|..+++.. .+.+.+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip~-- 256 (286)
T PRK03204 179 PSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFPD-- 256 (286)
T ss_pred CCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcCC--
Confidence 0000000000 00000 00 11 127999999999999886653 4555555543
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
.++++++++||..... ...++.+.+.+||
T Consensus 257 --~~~~~i~~aGH~~~~e-~Pe~~~~~i~~~~ 285 (286)
T PRK03204 257 --HVLVELPNAKHFIQED-APDRIAAAIIERF 285 (286)
T ss_pred --CeEEEcCCCccccccc-CHHHHHHHHHHhc
Confidence 6888999999987754 4557778888886
No 92
>PRK07581 hypothetical protein; Validated
Probab=99.59 E-value=1.6e-14 Score=153.09 Aligned_cols=238 Identities=13% Similarity=0.070 Sum_probs=132.3
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHH---HHHHHCCcEEEEECCCCCCCCChhhhhcC-CCCcc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSL-PGKVG 593 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~---~~la~~G~~Vv~~d~rG~~~~g~~~~~~~-~~~~~ 593 (771)
|.++++..+-+. ...+.|+||++||+++... .+...+ ..|...+|.|+++|+|| +|.+..... ...+.
T Consensus 25 ~~~l~y~~~G~~---~~~~~~~vll~~~~~~~~~--~~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~~~~~~~~~ 96 (339)
T PRK07581 25 DARLAYKTYGTL---NAAKDNAILYPTWYSGTHQ--DNEWLIGPGRALDPEKYFIIIPNMFG---NGLSSSPSNTPAPFN 96 (339)
T ss_pred CceEEEEecCcc---CCCCCCEEEEeCCCCCCcc--cchhhccCCCccCcCceEEEEecCCC---CCCCCCCCCCCCCCC
Confidence 455554444321 1124477777777654422 232222 25556789999999999 444421110 00111
Q ss_pred -----ccch-hhHHHHHHHHHHcCCCCCCeE-EEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-----------
Q 004141 594 -----SQDV-NDVLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----------- 655 (771)
Q Consensus 594 -----~~~~-~D~~~~i~~l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~----------- 655 (771)
...+ +|+.+....+.+. ...+++ .|+||||||++++.++.++|++++++|+.++......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~--lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~ 174 (339)
T PRK07581 97 AARFPHVTIYDNVRAQHRLLTEK--FGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKA 174 (339)
T ss_pred CCCCCceeHHHHHHHHHHHHHHH--hCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHH
Confidence 1112 4444433445443 234674 7999999999999999999999999998865432100
Q ss_pred -hhcCCCCC--c---------------ch---hhhhc-cCCCCcc----------------CCCCCChhhHHH----Hhh
Q 004141 656 -MVGTTDIP--D---------------WC---YVESY-GSKGKDS----------------FTESPSVEDLTR----FHS 693 (771)
Q Consensus 656 -~~~~~~~~--~---------------~~---~~~~~-~~~~~~~----------------~~~~~~~~~~~~----~~~ 693 (771)
+....... . +. +...+ ....... ............ +..
T Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 254 (339)
T PRK07581 175 ALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQR 254 (339)
T ss_pred HHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhh
Confidence 00000000 0 00 00000 0000000 000000000000 000
Q ss_pred ----------cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC-CCccCCCCCChHHHHHHH
Q 004141 694 ----------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVHGIERPQSDFESFLNI 762 (771)
Q Consensus 694 ----------~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i 762 (771)
.+....+.++++|+|+++|++|..+|+..++.+.+.+.. .+++++++ +||.....+. .++...|
T Consensus 255 ~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p~~~~~~l~~~ip~----a~l~~i~~~~GH~~~~~~~-~~~~~~~ 329 (339)
T PRK07581 255 GDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFPPEDCEAEAALIPN----AELRPIESIWGHLAGFGQN-PADIAFI 329 (339)
T ss_pred cccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEeCCCCCccccccCc-HHHHHHH
Confidence 011234667899999999999999999888887776644 68889998 8997765444 4788899
Q ss_pred HHHHHHhh
Q 004141 763 GLWFKKYC 770 (771)
Q Consensus 763 ~~fl~~~L 770 (771)
.+|+++++
T Consensus 330 ~~~~~~~~ 337 (339)
T PRK07581 330 DAALKELL 337 (339)
T ss_pred HHHHHHHH
Confidence 99999876
No 93
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.58 E-value=3.6e-14 Score=150.69 Aligned_cols=245 Identities=15% Similarity=0.166 Sum_probs=140.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC---------cchHHH---HHHHHCCcEEEEECCCCC--CCCCh
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---------SYSKSL---AFLSSVGYSLLIVNYRGS--LGFGE 582 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~---------~~~~~~---~~la~~G~~Vv~~d~rG~--~~~g~ 582 (771)
+|.++++..+-+++ ....|+||++||.+.+.... .|...+ ..|...+|.|+++|+||. +..+.
T Consensus 14 ~~~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~ 90 (351)
T TIGR01392 14 SDVRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGP 90 (351)
T ss_pred CCceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCC
Confidence 35667766665431 12347899999966543111 133332 255578999999999993 22221
Q ss_pred hhhhcC----CCCccccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh--
Q 004141 583 EALQSL----PGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-- 655 (771)
Q Consensus 583 ~~~~~~----~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-- 655 (771)
+..... ..+.....++|+.+.+..+++.- ..++ +.|+||||||.+++.++.++|++++++|+.++......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 168 (351)
T TIGR01392 91 SSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAWC 168 (351)
T ss_pred CCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHHH
Confidence 110000 00111345677777776666653 4467 99999999999999999999999999998887543110
Q ss_pred --hh-----cCC---C-----C-----Ccchh--hhh-----ccC-C-CCccCCCC------C--------ChhhH----
Q 004141 656 --MV-----GTT---D-----I-----PDWCY--VES-----YGS-K-GKDSFTES------P--------SVEDL---- 688 (771)
Q Consensus 656 --~~-----~~~---~-----~-----~~~~~--~~~-----~~~-~-~~~~~~~~------~--------~~~~~---- 688 (771)
+. ... . . +.+.+ ... +.. . ....+... + ..+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (351)
T TIGR01392 169 IAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRYQ 248 (351)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHHH
Confidence 00 000 0 0 00000 000 000 0 00000000 0 00000
Q ss_pred -----------------HHHhhcCc-------ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE-eC
Q 004141 689 -----------------TRFHSKSP-------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV-FP 743 (771)
Q Consensus 689 -----------------~~~~~~sp-------~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~-~~ 743 (771)
..+...+. ...+.+|++|+|+|+|++|..+|++.++.+.+.+.+....++++. ++
T Consensus 249 ~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~ 328 (351)
T TIGR01392 249 GDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIES 328 (351)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCC
Confidence 00111111 234668899999999999999999999999999987544444444 46
Q ss_pred CCCccCCCCCChHHHHHHHHHHHH
Q 004141 744 NDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
++||..... ....+.+.+.+||+
T Consensus 329 ~~GH~~~le-~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 329 PYGHDAFLV-ETDQVEELIRGFLR 351 (351)
T ss_pred CCCcchhhc-CHHHHHHHHHHHhC
Confidence 899977654 34577777887763
No 94
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.58 E-value=6e-15 Score=146.52 Aligned_cols=196 Identities=20% Similarity=0.303 Sum_probs=121.0
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEE
Q 004141 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 619 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 619 (771)
||++||.+.+ ...|...+..| ++||.|+++|+|| +|.+.... .......++..+.+..+++.. ..+++.
T Consensus 1 vv~~hG~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G---~G~s~~~~---~~~~~~~~~~~~~l~~~l~~~--~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGS--SESWDPLAEAL-ARGYRVIAFDLPG---HGRSDPPP---DYSPYSIEDYAEDLAELLDAL--GIKKVI 69 (228)
T ss_dssp EEEE-STTTT--GGGGHHHHHHH-HTTSEEEEEECTT---STTSSSHS---SGSGGSHHHHHHHHHHHHHHT--TTSSEE
T ss_pred eEEECCCCCC--HHHHHHHHHHH-hCCCEEEEEecCC---cccccccc---ccCCcchhhhhhhhhhccccc--cccccc
Confidence 7999998766 35788888888 5899999999999 44433211 122334566666665555552 347899
Q ss_pred EEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc-------CCCCCcch--hhhhccCCCCccCCCCCCh-----
Q 004141 620 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPDWC--YVESYGSKGKDSFTESPSV----- 685 (771)
Q Consensus 620 l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~----- 685 (771)
++|||+||.+++.++.++|++++++|+.+|......... ......+. ....+..............
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999875322110 00000000 0000000000000000000
Q ss_pred ---hhHHH-----HhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 686 ---EDLTR-----FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 686 ---~~~~~-----~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
..... .........+.++++|+++++|++|..++.+..+.+.+.+. ++++++++++||.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLP----NAELVVIPGAGHFLF 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHST----TEEEEEETTSSSTHH
T ss_pred ccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCC----CCEEEEECCCCCccH
Confidence 00000 01223335567889999999999999998666666655543 489999999999865
No 95
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.58 E-value=5.9e-14 Score=125.35 Aligned_cols=194 Identities=18% Similarity=0.243 Sum_probs=133.8
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC---CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~---~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
.+|.-.++++.. .|. .....|+.|.+|--|... ........+..|.++||+++.+||||.+.+...+
T Consensus 9 i~Gp~G~le~~~-~~~---~~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~f------ 78 (210)
T COG2945 9 INGPAGRLEGRY-EPA---KTPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEF------ 78 (210)
T ss_pred ecCCcccceecc-CCC---CCCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcc------
Confidence 344445566544 444 356789999999744322 2223345677889999999999999977765554
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
..|.-+.+|+.++++|+.++.. +..-..+.|+|+|+++++.++.+.|+ ....+...|.++...
T Consensus 79 D~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~~d--------------- 141 (210)
T COG2945 79 DNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINAYD--------------- 141 (210)
T ss_pred cCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCchh---------------
Confidence 3455579999999999998742 22335789999999999999998765 344455555443100
Q ss_pred ccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
...+....+|.++++|+.|.++++......++. .+.+++.+++++|.|.
T Consensus 142 --------------------------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~~a~HFF~ 190 (210)
T COG2945 142 --------------------------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQES-----IKITVITIPGADHFFH 190 (210)
T ss_pred --------------------------hhhccCCCCCceeEecChhhhhcHHHHHHhhcC-----CCCceEEecCCCceec
Confidence 011233457999999999999887766655443 4678999999999876
Q ss_pred CCCChHHHHHHHHHHHH
Q 004141 751 RPQSDFESFLNIGLWFK 767 (771)
Q Consensus 751 ~~~~~~~~~~~i~~fl~ 767 (771)
.. .....+.+.+|+.
T Consensus 191 gK--l~~l~~~i~~~l~ 205 (210)
T COG2945 191 GK--LIELRDTIADFLE 205 (210)
T ss_pred cc--HHHHHHHHHHHhh
Confidence 43 2356677888883
No 96
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.58 E-value=2.3e-14 Score=145.51 Aligned_cols=207 Identities=20% Similarity=0.206 Sum_probs=124.9
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|.||++||.+.+ ...|...+..|.+ .|.|+++|+|| +|.+.. . .....+++. +.+.+. ..++
T Consensus 14 ~~ivllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~---~---~~~~~~~~~---~~l~~~---~~~~ 75 (256)
T PRK10349 14 VHLVLLHGWGLN--AEVWRCIDEELSS-HFTLHLVDLPG---FGRSRG---F---GALSLADMA---EAVLQQ---APDK 75 (256)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHhc-CCEEEEecCCC---CCCCCC---C---CCCCHHHHH---HHHHhc---CCCC
Confidence 569999997655 4467777888865 59999999999 554421 1 112233333 334433 3478
Q ss_pred EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCC-cc-------------hhhhh------ccCCCC-
Q 004141 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP-DW-------------CYVES------YGSKGK- 676 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~-~~-------------~~~~~------~~~~~~- 676 (771)
+.++||||||.+++.++.++|++++++|+.++.............. .+ ..... +.....
T Consensus 76 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
T PRK10349 76 AIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETAR 155 (256)
T ss_pred eEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchHH
Confidence 9999999999999999999999999999887642210000000000 00 00000 000000
Q ss_pred -------ccCCC--CCChhh----HHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004141 677 -------DSFTE--SPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 677 -------~~~~~--~~~~~~----~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
..... .+.... ...+...+....+.++++|+|+++|++|..+|.+.+..+.+.+.+ .++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~----~~~~~i~ 231 (256)
T PRK10349 156 QDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPH----SESYIFA 231 (256)
T ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCC----CeEEEeC
Confidence 00000 000000 011122233345778899999999999999998877666665543 6899999
Q ss_pred CCCccCCCCCChHHHHHHHHHHHH
Q 004141 744 NDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
++||.... +....+...+.+|-.
T Consensus 232 ~~gH~~~~-e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 232 KAAHAPFI-SHPAEFCHLLVALKQ 254 (256)
T ss_pred CCCCCccc-cCHHHHHHHHHHHhc
Confidence 99998765 444577777777643
No 97
>PLN00021 chlorophyllase
Probab=99.58 E-value=1.5e-13 Score=140.85 Aligned_cols=182 Identities=20% Similarity=0.233 Sum_probs=122.8
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
.++.+.++.|. ..+++|+||++||+... ...|...+..|+++||.|+++|++|..+. ....+++
T Consensus 37 ~~~p~~v~~P~---~~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i~ 100 (313)
T PLN00021 37 PPKPLLVATPS---EAGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEIK 100 (313)
T ss_pred CCceEEEEeCC---CCCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcCCC-----------CchhhHH
Confidence 45778899997 45778999999997654 44677788899999999999999873211 0122356
Q ss_pred hHHHHHHHHHHc--------CCCCCCeEEEEEcChhHHHHHHHHhhCCC-----ceeEEEecCCccchhhhhcCCCCCcc
Q 004141 599 DVLTAIDHVIDM--------GLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDW 665 (771)
Q Consensus 599 D~~~~i~~l~~~--------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~p~~~~~~~~~~~~~~~~ 665 (771)
+..++++|+.+. ..++.++++|+|||+||.+++.++..+++ .++++|+..|+....... .+
T Consensus 101 d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~-~~----- 174 (313)
T PLN00021 101 DAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK-QT----- 174 (313)
T ss_pred HHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc-CC-----
Confidence 667777777652 22567899999999999999999988764 578888888875321100 00
Q ss_pred hhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCC-----ccC----cH-HHHHHHHHHHhCCC
Q 004141 666 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-----RVP----VS-NGLQYARALREKGV 735 (771)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~-----~vp----~~-~~~~~~~~l~~~g~ 735 (771)
.+.. ....+ ..-.+.+|+|++++..|. .+| .. +..+|+++++ .
T Consensus 175 ----------------~p~i------l~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~---~ 227 (313)
T PLN00021 175 ----------------PPPV------LTYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECK---A 227 (313)
T ss_pred ----------------CCcc------cccCc--ccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcC---C
Confidence 0000 00011 112267999999999763 222 32 3356766654 3
Q ss_pred CEEEEEeCCCCccC
Q 004141 736 ETKVIVFPNDVHGI 749 (771)
Q Consensus 736 ~~~~~~~~~~~H~~ 749 (771)
+..+.+.++++|.-
T Consensus 228 ~~~~~~~~~~gH~~ 241 (313)
T PLN00021 228 PAVHFVAKDYGHMD 241 (313)
T ss_pred CeeeeeecCCCcce
Confidence 67888999999963
No 98
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.57 E-value=3e-14 Score=144.06 Aligned_cols=314 Identities=16% Similarity=0.161 Sum_probs=157.0
Q ss_pred CCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceee
Q 004141 82 ENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW 160 (771)
Q Consensus 82 ~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~w 160 (771)
.|.+.+|||..+-.+...+-..+.|.+||++|+|.++.+ +..++|.++ ..++.++||+.+.... .+..+
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d-g~~nly~lDL~t~~i~QLTdg~g~~~---------~g~~~ 88 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD-GNRNLYLLDLATGEITQLTDGPGDNT---------FGGFL 88 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT-SS-EEEEEETTT-EEEE---SS-B-T---------TT-EE
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC-CCcceEEEEcccCEEEECccCCCCCc---------cceEE
Confidence 344667887665333223455689999999999998876 888999999 8888899998753321 26779
Q ss_pred cCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc---------------CC------c---CcccCCcc
Q 004141 161 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE---------------ED------W---GETYAGKR 216 (771)
Q Consensus 161 SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~d------~---g~~~~~~~ 216 (771)
||+.+.|+|+....... ..+....+..........|++...|. .| | .+.+....
T Consensus 89 s~~~~~~~Yv~~~~~l~--~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 89 SPDDRALYYVKNGRSLR--RVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp -TTSSEEEEEETTTEEE--EEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred ecCCCeEEEEECCCeEE--EEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 99999999976432111 01111111111111122333222221 11 1 12223334
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|+.+|+.+|+.+.+ .....-.+.+.+||.... ++.-.-+..- -.-..+||.++.
T Consensus 167 ~~~i~~idl~tG~~~~v--~~~~~wlgH~~fsP~dp~----li~fCHEGpw--------~~Vd~RiW~i~~--------- 223 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVV--FEDTDWLGHVQFSPTDPT----LIMFCHEGPW--------DLVDQRIWTINT--------- 223 (386)
T ss_dssp -EEEEEEETTT--EEEE--EEESS-EEEEEEETTEEE----EEEEEE-S-T--------TTSS-SEEEEET---------
T ss_pred CceEEEEECCCCceeEE--EecCccccCcccCCCCCC----EEEEeccCCc--------ceeceEEEEEEc---------
Confidence 57899999999999998 666667789999996655 4443333221 112348999998
Q ss_pred hhhhcCCCCCCcceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 297 LELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
+++..+.+... ...+...-|+|||++|+|.+... | ....-|..+|+.+++.+.+.....
T Consensus 224 --------dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~----~--~~~~~i~~~d~~t~~~~~~~~~p~----- 284 (386)
T PF14583_consen 224 --------DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP----G--GQDFWIAGYDPDTGERRRLMEMPW----- 284 (386)
T ss_dssp --------TS---EESS---TTEEEEEEEE-TTSS-EEEEEEET----T--T--EEEEEE-TTT--EEEEEEE-S-----
T ss_pred --------CCCcceeeecCCCCcccccccccCCCCEEEEEeecC----C--CCceEEEeeCCCCCCceEEEeCCc-----
Confidence 66666665543 33578899999999999987754 2 224468888988876543211110
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeee-------------CCeeEEEEEECCCCcEEEecCCCC--------
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-------------GSSQVIISVNVSSGELLRITPAES-------- 433 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-------------~~~~~l~~~d~~tg~~~~l~~~~~-------- 433 (771)
...+.-++||+.++=-... .+..-||.+++.+++...|.....
T Consensus 285 ----------------~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~ 348 (386)
T PF14583_consen 285 ----------------CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD 348 (386)
T ss_dssp ----------------EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTB
T ss_pred ----------------eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCC
Confidence 0112235677633221111 112257888998888776654321
Q ss_pred ---CceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 434 ---NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 434 ---~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
..-.+.|||||++|+|.+. ...++.||++.+.
T Consensus 349 ~q~~hPhp~FSPDgk~VlF~Sd-~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 349 RQVTHPHPSFSPDGKWVLFRSD-MEGPPAVYLVEIP 383 (386)
T ss_dssp SSTT----EE-TTSSEEEEEE--TTSS-EEEEEE--
T ss_pred CccCCCCCccCCCCCEEEEECC-CCCCccEEEEeCc
Confidence 2445799999999999765 4677889998865
No 99
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.57 E-value=4e-14 Score=152.47 Aligned_cols=213 Identities=15% Similarity=0.207 Sum_probs=128.1
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..|+||++||.+.+ ...|......|.+ +|.|+++|+||.+ .+.. ........++.+.+..+++. ++
T Consensus 129 ~~~~~vl~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~g~G---~s~~-----~~~~~~~~~~~~~~~~~~~~--~~ 195 (371)
T PRK14875 129 GDGTPVVLIHGFGGD--LNNWLFNHAALAA-GRPVIALDLPGHG---ASSK-----AVGAGSLDELAAAVLAFLDA--LG 195 (371)
T ss_pred CCCCeEEEECCCCCc--cchHHHHHHHHhc-CCEEEEEcCCCCC---CCCC-----CCCCCCHHHHHHHHHHHHHh--cC
Confidence 345789999996654 4466667777754 5999999999944 3311 11123466777666666655 45
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh-------hcCCCCCc-c--hhhhhccCC-CCc------
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------VGTTDIPD-W--CYVESYGSK-GKD------ 677 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~-------~~~~~~~~-~--~~~~~~~~~-~~~------ 677 (771)
..++.|+|||+||.+++.++.++|++++++|+.+|....... +....... . .+...+... ...
T Consensus 196 ~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (371)
T PRK14875 196 IERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQMVED 275 (371)
T ss_pred CccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHHHHH
Confidence 678999999999999999999999999999988875321100 00000000 0 000000000 000
Q ss_pred --cCCCCCC-hhhHHHH----h-----hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004141 678 --SFTESPS-VEDLTRF----H-----SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 678 --~~~~~~~-~~~~~~~----~-----~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
.+..... ......+ . ..+....+.++++|+|+++|++|..+|++++..+. ..+++.+++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~~~~ 348 (371)
T PRK14875 276 LLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVLPGA 348 (371)
T ss_pred HHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEeCCC
Confidence 0000000 0000000 0 01112245678999999999999999987765432 23788899999
Q ss_pred CccCCCCCChHHHHHHHHHHHHH
Q 004141 746 VHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
||...... ...+.+.+.+||++
T Consensus 349 gH~~~~e~-p~~~~~~i~~fl~~ 370 (371)
T PRK14875 349 GHMPQMEA-AADVNRLLAEFLGK 370 (371)
T ss_pred CCChhhhC-HHHHHHHHHHHhcc
Confidence 99776443 44677777788865
No 100
>PLN02578 hydrolase
Probab=99.57 E-value=7.8e-14 Score=148.13 Aligned_cols=210 Identities=18% Similarity=0.166 Sum_probs=122.8
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc-chhhHHHHHHHHHHcCCCCCC
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ-DVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~-~~~D~~~~i~~l~~~~~~d~~ 616 (771)
|.||++||.+.+ ...|...+..|+ .+|.|+++|++|.+.+... ...+... ..+++.+.++.+ ..+
T Consensus 87 ~~vvliHG~~~~--~~~w~~~~~~l~-~~~~v~~~D~~G~G~S~~~-----~~~~~~~~~a~~l~~~i~~~------~~~ 152 (354)
T PLN02578 87 LPIVLIHGFGAS--AFHWRYNIPELA-KKYKVYALDLLGFGWSDKA-----LIEYDAMVWRDQVADFVKEV------VKE 152 (354)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCCCCCCCCc-----ccccCHHHHHHHHHHHHHHh------ccC
Confidence 568999996654 345666677775 4699999999995443221 1111111 123444444433 246
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC--------CCCCcchhhh-------------------
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--------TDIPDWCYVE------------------- 669 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~--------~~~~~~~~~~------------------- 669 (771)
++.++|||+||++++.++.++|++++++|+.++.......... ..........
T Consensus 153 ~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T PLN02578 153 PAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAK 232 (354)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999988764321100000 0000000000
Q ss_pred -----------hccC-CCCccC--------CCCCC-hhh-HH---HHh----hcCcccccCCCCCcEEEEeeCCCCccCc
Q 004141 670 -----------SYGS-KGKDSF--------TESPS-VED-LT---RFH----SKSPISHISKVKTPTIFLLGAQDLRVPV 720 (771)
Q Consensus 670 -----------~~~~-~~~~~~--------~~~~~-~~~-~~---~~~----~~sp~~~~~~i~~P~lii~G~~D~~vp~ 720 (771)
.+.. .....+ ...+. .+. .. .+. .......+.++++|+|+++|++|.++|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~ 312 (354)
T PLN02578 233 QPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGP 312 (354)
T ss_pred CHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCH
Confidence 0000 000000 00000 000 00 000 1112234678899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 721 SNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 721 ~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+.+.++.+.+.+ .+++++ ++||.+... ...++.+.|.+|++
T Consensus 313 ~~~~~l~~~~p~----a~l~~i-~~GH~~~~e-~p~~~~~~I~~fl~ 353 (354)
T PLN02578 313 AKAEKIKAFYPD----TTLVNL-QAGHCPHDE-VPEQVNKALLEWLS 353 (354)
T ss_pred HHHHHHHHhCCC----CEEEEe-CCCCCcccc-CHHHHHHHHHHHHh
Confidence 888877766543 567777 689987644 44578889999985
No 101
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.56 E-value=7.5e-14 Score=149.34 Aligned_cols=246 Identities=15% Similarity=0.164 Sum_probs=143.2
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-----------cchHHH---HHHHHCCcEEEEECCCCC-CCC-C
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----------SYSKSL---AFLSSVGYSLLIVNYRGS-LGF-G 581 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-----------~~~~~~---~~la~~G~~Vv~~d~rG~-~~~-g 581 (771)
|..+++..+-.. .....|+||++||.+.+.... .|..++ ..|...+|.|+++|++|. ++. +
T Consensus 32 ~~~~~y~~~G~~---~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~ 108 (379)
T PRK00175 32 PVELAYETYGTL---NADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTG 108 (379)
T ss_pred CceEEEEecccc---CCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCC
Confidence 445655554321 122358999999977654211 133332 134367899999999983 221 1
Q ss_pred hhhhhc---CC--CCccccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh
Q 004141 582 EEALQS---LP--GKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 582 ~~~~~~---~~--~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~ 655 (771)
.+.... .+ ..+....++++.+.+..+++.- +.++ +.++||||||.+++.++.++|++++++|+.++......
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 186 (379)
T PRK00175 109 PSSINPDTGKPYGSDFPVITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSA 186 (379)
T ss_pred CCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCH
Confidence 111000 00 0111345677777776666653 3466 58999999999999999999999999998886542110
Q ss_pred ----h-----hcCCCCCcch-------------------------------hhhhccCCCCccC--CCC---CChhhH--
Q 004141 656 ----M-----VGTTDIPDWC-------------------------------YVESYGSKGKDSF--TES---PSVEDL-- 688 (771)
Q Consensus 656 ----~-----~~~~~~~~~~-------------------------------~~~~~~~~~~~~~--~~~---~~~~~~-- 688 (771)
+ ......+.|. +...+........ ... ...+..
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~ 266 (379)
T PRK00175 187 QNIAFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLR 266 (379)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHH
Confidence 0 0000000000 0000100000000 000 000000
Q ss_pred -------------------HHHhhcC--------cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 689 -------------------TRFHSKS--------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 689 -------------------~~~~~~s--------p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
..+...+ -...+.+|++|+|+|+|+.|..+|++.++++.+.+...+..+++++
T Consensus 267 ~~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~ 346 (379)
T PRK00175 267 YQGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAE 346 (379)
T ss_pred HHHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEE
Confidence 0000011 1234578899999999999999999999999999988777778887
Q ss_pred eC-CCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 742 FP-NDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 742 ~~-~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
++ ++||.....+ ..++.+.+.+||++.
T Consensus 347 i~~~~GH~~~le~-p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 347 IDSPYGHDAFLLD-DPRYGRLVRAFLERA 374 (379)
T ss_pred eCCCCCchhHhcC-HHHHHHHHHHHHHhh
Confidence 75 8999876544 447888999999764
No 102
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.56 E-value=6.3e-14 Score=126.68 Aligned_cols=209 Identities=15% Similarity=0.158 Sum_probs=136.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+...++|++||.-...........+.+|++.||.++.+|++|.+++..++. ++ .+..+++|+...++++....
T Consensus 31 gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~---~G-n~~~eadDL~sV~q~~s~~n--- 103 (269)
T KOG4667|consen 31 GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFY---YG-NYNTEADDLHSVIQYFSNSN--- 103 (269)
T ss_pred CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccc---cC-cccchHHHHHHHHHHhccCc---
Confidence 456789999996655444345567788999999999999999776655542 22 33456799999999986531
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC---CCCcchhhhhccCCCC--ccCCCCCChhhHH
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DIPDWCYVESYGSKGK--DSFTESPSVEDLT 689 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 689 (771)
.---+++|||-||..++.++.++++ +.-+|.+++-.+........ +...|....-+..... ..+......+...
T Consensus 104 r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlm 182 (269)
T KOG4667|consen 104 RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLM 182 (269)
T ss_pred eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHHH
Confidence 1223699999999999999999887 67777777777654433211 1111211111111000 1111111222222
Q ss_pred HHhhcCcccccCCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh
Q 004141 690 RFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755 (771)
Q Consensus 690 ~~~~~sp~~~~~~i--~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 755 (771)
.....+......+| +||+|-+||..|.+||.+.+.+|++.+.. .++.+++|+.|++...+..
T Consensus 183 drLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n----H~L~iIEgADHnyt~~q~~ 246 (269)
T KOG4667|consen 183 DRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN----HKLEIIEGADHNYTGHQSQ 246 (269)
T ss_pred HHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccC----CceEEecCCCcCccchhhh
Confidence 22222222222223 59999999999999999999999999876 6899999999999865543
No 103
>PLN02872 triacylglycerol lipase
Probab=99.56 E-value=4.9e-14 Score=149.00 Aligned_cols=248 Identities=17% Similarity=0.196 Sum_probs=147.5
Q ss_pred cCCCceEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCCc----chHHHHHHHHCCcEEEEECCCCCCC-CChhhhhcC
Q 004141 515 KGAQKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSS----YSKSLAFLSSVGYSLLIVNYRGSLG-FGEEALQSL 588 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~-~~~~~~p~vv~~HGg~~~~~~~~----~~~~~~~la~~G~~Vv~~d~rG~~~-~g~~~~~~~ 588 (771)
..||..|....+.+... ....+.|+|+++||...+..... ....+..|+++||.|+++|.||.+. +|.......
T Consensus 51 T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh~~~~~~ 130 (395)
T PLN02872 51 TKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEK 130 (395)
T ss_pred CCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCCCCCCcc
Confidence 35666676666643321 12234688999999765432211 1234556889999999999999642 221111111
Q ss_pred CC---Ccc--ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC---ceeEEEecCCccchhh-----
Q 004141 589 PG---KVG--SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLAL----- 655 (771)
Q Consensus 589 ~~---~~~--~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~p~~~~~~----- 655 (771)
.. .+. .....|+.++++++.+.. .+++.++|||+||.+++.++ .+|+ +++++++.+|+..+..
T Consensus 131 ~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~~~~~~~~ 206 (395)
T PLN02872 131 DKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYLDHVTAPL 206 (395)
T ss_pred chhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhhccCCCHH
Confidence 11 111 122469999999997652 36899999999999998555 4565 4667777777643200
Q ss_pred -----------h---hcCCCC-C-cc---------h---------hhhhccCC---------------------------
Q 004141 656 -----------M---VGTTDI-P-DW---------C---------YVESYGSK--------------------------- 674 (771)
Q Consensus 656 -----------~---~~~~~~-~-~~---------~---------~~~~~~~~--------------------------- 674 (771)
+ .+.... + .. | +....+..
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~~~pagtS~k~~~H~ 286 (395)
T PLN02872 207 VLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLEYEPHPSSVKNLRHL 286 (395)
T ss_pred HHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHhcCCCcchHHHHHHH
Confidence 0 010000 0 00 0 00000000
Q ss_pred -------CCccCCCCCChhhHHHHhhcC-cccccCCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 675 -------GKDSFTESPSVEDLTRFHSKS-PISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 675 -------~~~~~~~~~~~~~~~~~~~~s-p~~~~~~i--~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
..+.|.- ....+...|-+.. |...+.++ ++|+++++|++|..++++....+.+.+.. ..++..+++
T Consensus 287 ~Q~~~s~~f~~yDy-g~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~---~~~l~~l~~ 362 (395)
T PLN02872 287 FQMIRKGTFAHYDY-GIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPS---KPELLYLEN 362 (395)
T ss_pred HHHHhcCCcccCCC-CchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCC---ccEEEEcCC
Confidence 0000100 0112222333333 34457777 57999999999999999988888887754 247788999
Q ss_pred CCcc--CCCCCChHHHHHHHHHHHHHhh
Q 004141 745 DVHG--IERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 745 ~~H~--~~~~~~~~~~~~~i~~fl~~~L 770 (771)
.+|. +...+....++..|++||++++
T Consensus 363 ~gH~dfi~~~eape~V~~~Il~fL~~~~ 390 (395)
T PLN02872 363 YGHIDFLLSTSAKEDVYNHMIQFFRSLG 390 (395)
T ss_pred CCCHHHHhCcchHHHHHHHHHHHHHHhh
Confidence 9997 4456667789999999999875
No 104
>COG0400 Predicted esterase [General function prediction only]
Probab=99.55 E-value=2e-13 Score=129.29 Aligned_cols=188 Identities=16% Similarity=0.157 Sum_probs=129.3
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhc-CCCCccc----cchhhHHHHHHHH
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS-LPGKVGS----QDVNDVLTAIDHV 607 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~-~~~~~~~----~~~~D~~~~i~~l 607 (771)
.....|+||++||-+.+ ...+......+ .-.+.++.+.-+-.-..+..+... ....+.. ...+.+.++++.+
T Consensus 14 ~~p~~~~iilLHG~Ggd--e~~~~~~~~~~-~P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~ 90 (207)
T COG0400 14 GDPAAPLLILLHGLGGD--ELDLVPLPELI-LPNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEEL 90 (207)
T ss_pred CCCCCcEEEEEecCCCC--hhhhhhhhhhc-CCCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 34567899999996643 33444433333 333666665533221111111110 0111111 1233455666666
Q ss_pred HHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhh
Q 004141 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 687 (771)
Q Consensus 608 ~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (771)
.++..++.+|+.++|+|.|+.+++.++.++|+.++++++.+|..-...
T Consensus 91 ~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~-------------------------------- 138 (207)
T COG0400 91 AEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP-------------------------------- 138 (207)
T ss_pred HHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC--------------------------------
Confidence 666778999999999999999999999999999999999888642110
Q ss_pred HHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 688 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 688 ~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
......-.+|+|++||+.|++||...+.++.+.|++.|.++++..++ .||.+. .+.++.+..|+.
T Consensus 139 ---------~~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~ 203 (207)
T COG0400 139 ---------ELLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLA 203 (207)
T ss_pred ---------ccccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHH
Confidence 00011234799999999999999999999999999999999999998 899886 567888999998
Q ss_pred Hhh
Q 004141 768 KYC 770 (771)
Q Consensus 768 ~~L 770 (771)
+.+
T Consensus 204 ~~~ 206 (207)
T COG0400 204 NTL 206 (207)
T ss_pred hcc
Confidence 765
No 105
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.55 E-value=9.2e-14 Score=147.46 Aligned_cols=236 Identities=12% Similarity=0.148 Sum_probs=140.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCC---CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~---~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
+..+.|.|... ....+.||++||-.... ....+...+..|+++||.|+++|++|. |.+.. .........
T Consensus 48 ~~l~~~~~~~~--~~~~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~---g~s~~---~~~~~d~~~ 119 (350)
T TIGR01836 48 VVLYRYTPVKD--NTHKTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYP---DRADR---YLTLDDYIN 119 (350)
T ss_pred EEEEEecCCCC--cCCCCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCC---CHHHh---cCCHHHHHH
Confidence 44455666421 12233488889842211 112345688899999999999999983 33211 111111112
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC-----------------C
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----------------T 660 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~-----------------~ 660 (771)
+++.++++++.++. +.+++.++||||||.+++.++..+|+.++++|+.++.++....... .
T Consensus 120 ~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (350)
T TIGR01836 120 GYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMG 197 (350)
T ss_pred HHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHHhcC
Confidence 45778889888773 4568999999999999999999999999999999887764321100 0
Q ss_pred CCCcchhhhhc--------------------cC-CCCccC-------CCCCC--hhhHH----HHhhcCc----------
Q 004141 661 DIPDWCYVESY--------------------GS-KGKDSF-------TESPS--VEDLT----RFHSKSP---------- 696 (771)
Q Consensus 661 ~~~~~~~~~~~--------------------~~-~~~~~~-------~~~~~--~~~~~----~~~~~sp---------- 696 (771)
.++.+.....+ .. .....+ ...+. ..... .....+.
T Consensus 198 ~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~ 277 (350)
T TIGR01836 198 NIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGG 277 (350)
T ss_pred CCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECC
Confidence 01111000000 00 000000 00000 00000 0001111
Q ss_pred -ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC--CCCChHHHHHHHHHHHHHh
Q 004141 697 -ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE--RPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 697 -~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~~ 769 (771)
...+.++++|+|+++|++|.++|++.+..+++.+.. .++++++++ +||... .+....+++..+.+||.++
T Consensus 278 ~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~--~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 278 RKVDLKNIKMPILNIYAERDHLVPPDASKALNDLVSS--EDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred EEccHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCC--CCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHhC
Confidence 112556889999999999999999999888887653 356778887 567533 3334578999999999763
No 106
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.55 E-value=1.2e-13 Score=132.30 Aligned_cols=193 Identities=21% Similarity=0.161 Sum_probs=119.6
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhh-cCCCCccccch
Q 004141 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQ-SLPGKVGSQDV 597 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~~~~g~~~~~-~~~~~~~~~~~ 597 (771)
.+.+|.|+.. +.++.|+||++||...+.. .+.. +.+.-.++||+|+.|+-.........|.- ......+..+.
T Consensus 2 ~Y~lYvP~~~-~~~~~PLVv~LHG~~~~a~--~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~ 78 (220)
T PF10503_consen 2 SYRLYVPPGA-PRGPVPLVVVLHGCGQSAE--DFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDV 78 (220)
T ss_pred cEEEecCCCC-CCCCCCEEEEeCCCCCCHH--HHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccch
Confidence 4678999854 3347899999999766532 2221 22233468999999995432111222210 11122334456
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCc
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
..+...++++..+..+|++||++.|+|.||.++..++..+|++|+++...+++.--.. .+... . ...+..
T Consensus 79 ~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a----~~~~~-a-~~~m~~---- 148 (220)
T PF10503_consen 79 AFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCA----ASGAS-A-LSAMRS---- 148 (220)
T ss_pred hhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccc----cCccc-H-HHHhhC----
Confidence 6777889999999889999999999999999999999999999999988877532110 00000 0 000000
Q ss_pred cCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004141 678 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
...+...........+. ... ..|++|+||+.|..|.+..+.++.+++...
T Consensus 149 --g~~~~p~~~~~a~~~~g--~~~--~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 149 --GPRPAPAAAWGARSDAG--AYP--GYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred --CCCCChHHHHHhhhhcc--CCC--CCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 00011111111111110 111 259999999999999999999998888763
No 107
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.54 E-value=6.8e-13 Score=132.12 Aligned_cols=220 Identities=12% Similarity=0.076 Sum_probs=131.2
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
++....+.++++.|. ..+++|+||++||.+.... ...+...+..|+++||.|+.+|+||. |.+........
T Consensus 6 ~~~~g~~~~~~~~p~---~~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~---G~S~g~~~~~~- 78 (266)
T TIGR03101 6 DAPHGFRFCLYHPPV---AVGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGC---GDSAGDFAAAR- 78 (266)
T ss_pred cCCCCcEEEEEecCC---CCCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCC---CCCCCccccCC-
Confidence 334455778888876 3345799999999654321 22345567889999999999999994 43321111111
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC----------CC-
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----------TD- 661 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~----------~~- 661 (771)
.....+|+..+++++.+.+ ..+|+|+||||||.+++.++.++|+.++++|+.+|+.....+... ..
T Consensus 79 ~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~~~~~~~~ 155 (266)
T TIGR03101 79 WDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLVARRLGG 155 (266)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHHHHHhccc
Confidence 1123688888899987763 468999999999999999999999999999999998764322110 00
Q ss_pred CCcc---hhhhhccCCCCccCCCCCC-hhhHHHHhhcCcccccCCCCCcEEEEeeCCCC-ccCcHHHHHHHHHHHhCCCC
Q 004141 662 IPDW---CYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-RVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 662 ~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~-~vp~~~~~~~~~~l~~~g~~ 736 (771)
.... ...+.......-.+.+... .+....+...+....... ..++|++.-..+. .-.......+.+++++.|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 234 (266)
T TIGR03101 156 ESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NCPVHWFEVRPEEGATLSPVFSRLGEQWVQSGVE 234 (266)
T ss_pred cccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CCceEEEEeccccCCCCCHHHHHHHHHHHHcCCe
Confidence 0000 0000000000000111111 111122222222111111 4567777654322 22234567889999999999
Q ss_pred EEEEEeCCC
Q 004141 737 TKVIVFPND 745 (771)
Q Consensus 737 ~~~~~~~~~ 745 (771)
++...|++-
T Consensus 235 v~~~~~~~~ 243 (266)
T TIGR03101 235 VTVDLVPGP 243 (266)
T ss_pred EeeeecCCc
Confidence 999999886
No 108
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.54 E-value=2.1e-13 Score=134.04 Aligned_cols=222 Identities=19% Similarity=0.285 Sum_probs=134.9
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
...+.+|++||-+.. ...|...+..|+. ...|.++|+.| +|.+.+.....+.. .....+.+.|+..... .+
T Consensus 88 ~~~~plVliHGyGAg--~g~f~~Nf~~La~-~~~vyaiDllG---~G~SSRP~F~~d~~-~~e~~fvesiE~WR~~--~~ 158 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAG--LGLFFRNFDDLAK-IRNVYAIDLLG---FGRSSRPKFSIDPT-TAEKEFVESIEQWRKK--MG 158 (365)
T ss_pred cCCCcEEEEeccchh--HHHHHHhhhhhhh-cCceEEecccC---CCCCCCCCCCCCcc-cchHHHHHHHHHHHHH--cC
Confidence 455668999995443 3356667777877 79999999999 77776655443322 2234555556544443 23
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh----hcCCCCCcch-----------------hhhhccC
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM----VGTTDIPDWC-----------------YVESYGS 673 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~----~~~~~~~~~~-----------------~~~~~~~ 673 (771)
.++..|+|||+||+++..+|.+||++++.+|+.+|.--.... ......+.|. ....+|.
T Consensus 159 L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp 238 (365)
T KOG4409|consen 159 LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGP 238 (365)
T ss_pred CcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccch
Confidence 568999999999999999999999999999999986422111 0011111121 0011111
Q ss_pred CCCcc-----CCCCCC--hhhH-HHHh-----------------------hcCc-ccccCCCC--CcEEEEeeCCCCccC
Q 004141 674 KGKDS-----FTESPS--VEDL-TRFH-----------------------SKSP-ISHISKVK--TPTIFLLGAQDLRVP 719 (771)
Q Consensus 674 ~~~~~-----~~~~~~--~~~~-~~~~-----------------------~~sp-~~~~~~i~--~P~lii~G~~D~~vp 719 (771)
....+ +...+. .++. ..|. ...| +..+..++ +|+++|+|++|- +.
T Consensus 239 ~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dW-mD 317 (365)
T KOG4409|consen 239 KLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDW-MD 317 (365)
T ss_pred HHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCccc-cc
Confidence 11110 001110 0111 1110 1122 23445555 999999999985 45
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
...+.++...+.. ..++++++|++||.....+ ...+.+.++.+++..
T Consensus 318 ~~~g~~~~~~~~~--~~~~~~~v~~aGHhvylDn-p~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 318 KNAGLEVTKSLMK--EYVEIIIVPGAGHHVYLDN-PEFFNQIVLEECDKV 364 (365)
T ss_pred chhHHHHHHHhhc--ccceEEEecCCCceeecCC-HHHHHHHHHHHHhcc
Confidence 5666777666532 4589999999999877544 347777888877653
No 109
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.54 E-value=4.9e-14 Score=133.53 Aligned_cols=177 Identities=19% Similarity=0.146 Sum_probs=126.1
Q ss_pred cCCCceEEEEEEecCCCCCCCCC-cEEEEEcCCCCCCCCCcchHH-------HHHHHHCCcEEEEECCCCCCCCChhhhh
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCD-PLIVVLHGGPHSVSLSSYSKS-------LAFLSSVGYSLLIVNYRGSLGFGEEALQ 586 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~-p~vv~~HGg~~~~~~~~~~~~-------~~~la~~G~~Vv~~d~rG~~~~g~~~~~ 586 (771)
...|.++.+.+|.|+++.+++++ |+|+|+||++..... ..... +...-+-+|-|++|.|--- +..+
T Consensus 168 ~~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~d-n~~~l~sg~gaiawa~pedqcfVlAPQy~~i--f~d~--- 241 (387)
T COG4099 168 ESTGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSD-NDKVLSSGIGAIAWAGPEDQCFVLAPQYNPI--FADS--- 241 (387)
T ss_pred cccCceeeEEEecccccCCCCccccEEEEEecCCCCCch-hhhhhhcCccceeeecccCceEEEccccccc--cccc---
Confidence 34578899999999999999998 999999997655322 11111 1111234467777775421 1111
Q ss_pred cCCCCccccchhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcc
Q 004141 587 SLPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW 665 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~ 665 (771)
.+............++ -+.+++.+|.+||.++|.|+||+.++.++.++|+.|++++++++--+..
T Consensus 242 ---e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v----------- 307 (387)
T COG4099 242 ---EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRV----------- 307 (387)
T ss_pred ---ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchh-----------
Confidence 0111112334445555 5667888999999999999999999999999999999999887753210
Q ss_pred hhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCC-CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004141 666 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
..+.. -+.|+.+.|+.+|+++|.+.++-++..|+..+.++++..|.
T Consensus 308 --------------------------------~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 308 --------------------------------YLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred --------------------------------hhhhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 11111 24799999999999999999999999999988888777665
No 110
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.54 E-value=1.6e-13 Score=138.14 Aligned_cols=206 Identities=17% Similarity=0.180 Sum_probs=119.4
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..| .+|.|+++|+|| +|.+.... ....++..+.+..+++.. +.+
T Consensus 2 ~p~vvllHG~~~~--~~~w~~~~~~l--~~~~vi~~D~~G---~G~S~~~~------~~~~~~~~~~l~~~l~~~--~~~ 66 (242)
T PRK11126 2 LPWLVFLHGLLGS--GQDWQPVGEAL--PDYPRLYIDLPG---HGGSAAIS------VDGFADVSRLLSQTLQSY--NIL 66 (242)
T ss_pred CCEEEEECCCCCC--hHHHHHHHHHc--CCCCEEEecCCC---CCCCCCcc------ccCHHHHHHHHHHHHHHc--CCC
Confidence 3779999998765 34777778777 379999999999 55442211 113445444444444442 357
Q ss_pred eEEEEEcChhHHHHHHHHhhCCC-ceeEEEecCCccchhhh----hcCCCCCcchh----------hhh-ccCCCCccCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALM----VGTTDIPDWCY----------VES-YGSKGKDSFT 680 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~p~~~~~~~----~~~~~~~~~~~----------~~~-~~~~~~~~~~ 680 (771)
++.++||||||.+++.++.++|+ +++++++.++....... ........|.. ... +.......+.
T Consensus 67 ~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (242)
T PRK11126 67 PYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVFASLN 146 (242)
T ss_pred CeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchhhccC
Confidence 89999999999999999999865 49998887654321100 00000000100 000 0000000000
Q ss_pred CC-----------CChhhHHHHhh-------cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004141 681 ES-----------PSVEDLTRFHS-------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 681 ~~-----------~~~~~~~~~~~-------~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
.. ........+.. .+....+.++++|+++++|++|..+. .+.+. ...++.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~-----~~~~~~~i 216 (242)
T PRK11126 147 AEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ-----LALPLHVI 216 (242)
T ss_pred ccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHH-----hcCeEEEe
Confidence 00 00000001100 01123456889999999999998552 22222 14789999
Q ss_pred CCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 743 PNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 743 ~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+++||.+.. +...++.+.|..||++
T Consensus 217 ~~~gH~~~~-e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 217 PNAGHNAHR-ENPAAFAASLAQILRL 241 (242)
T ss_pred CCCCCchhh-hChHHHHHHHHHHHhh
Confidence 999997764 4455888889999864
No 111
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.53 E-value=4e-13 Score=141.86 Aligned_cols=217 Identities=18% Similarity=0.192 Sum_probs=129.6
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|.||++||.+.. ...|...+..|+ .+|.|+++|++| +|.+...... ......++++...+..+++. +..
T Consensus 126 ~~~~ivllHG~~~~--~~~w~~~~~~L~-~~~~Via~DlpG---~G~S~~p~~~-~~~~ys~~~~a~~l~~~i~~--l~~ 196 (383)
T PLN03084 126 NNPPVLLIHGFPSQ--AYSYRKVLPVLS-KNYHAIAFDWLG---FGFSDKPQPG-YGFNYTLDEYVSSLESLIDE--LKS 196 (383)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCC---CCCCCCCccc-ccccCCHHHHHHHHHHHHHH--hCC
Confidence 35789999997765 346777777776 489999999999 5544321110 01123455666666555554 234
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh-----hhhc-C-CC-CCcchh---hh----hc---cCC---
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-----LMVG-T-TD-IPDWCY---VE----SY---GSK--- 674 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~-----~~~~-~-~~-~~~~~~---~~----~~---~~~--- 674 (771)
+++.|+|||+||.+++.++.++|++++++|+.+|..... .... . .. ...+.. .. .+ ...
T Consensus 197 ~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (383)
T PLN03084 197 DKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLRASDKALTSCGPYAMK 276 (383)
T ss_pred CCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHHHHhhhhcccCccCCC
Confidence 679999999999999999999999999999999864210 0000 0 00 000000 00 00 000
Q ss_pred --C----CccCCCCCC-hhhHH-HHhhc-Ccc-------c---ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004141 675 --G----KDSFTESPS-VEDLT-RFHSK-SPI-------S---HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 675 --~----~~~~~~~~~-~~~~~-~~~~~-sp~-------~---~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
. ...+..... ..... .+... ... . ...++++|+|+++|+.|..++.+..+++.+..
T Consensus 277 ~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~~~~~~~~a~~~----- 351 (383)
T PLN03084 277 EDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLNYDGVEDFCKSS----- 351 (383)
T ss_pred HHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcCHHHHHHHHHhc-----
Confidence 0 000000000 00000 00000 000 0 01357899999999999999988777766642
Q ss_pred CEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 736 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+.++.++++++|.+.. +...++...|.+|+.
T Consensus 352 ~a~l~vIp~aGH~~~~-E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 352 QHKLIELPMAGHHVQE-DCGEELGGIISGILS 382 (383)
T ss_pred CCeEEEECCCCCCcch-hCHHHHHHHHHHHhh
Confidence 3688999999997765 455688888888875
No 112
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.52 E-value=4.7e-13 Score=136.33 Aligned_cols=216 Identities=16% Similarity=0.194 Sum_probs=123.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..|.||++||.++. ...|......|.++||.|+++|+|| +|.+... + .....+++....+..+++... .
T Consensus 16 ~~~p~vvliHG~~~~--~~~w~~~~~~L~~~g~~vi~~dl~g---~G~s~~~--~--~~~~~~~~~~~~l~~~i~~l~-~ 85 (273)
T PLN02211 16 RQPPHFVLIHGISGG--SWCWYKIRCLMENSGYKVTCIDLKS---AGIDQSD--A--DSVTTFDEYNKPLIDFLSSLP-E 85 (273)
T ss_pred CCCCeEEEECCCCCC--cCcHHHHHHHHHhCCCEEEEecccC---CCCCCCC--c--ccCCCHHHHHHHHHHHHHhcC-C
Confidence 446889999997665 3468888888988999999999999 4433110 1 111234554444444444321 2
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh---hhhc-CCCCCcchhh-hh----ccCC-----C-----
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---LMVG-TTDIPDWCYV-ES----YGSK-----G----- 675 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~---~~~~-~~~~~~~~~~-~~----~~~~-----~----- 675 (771)
.+++.|+||||||.++..++.++|++++++|+.++..... .... ....+.+... .. ++.. .
T Consensus 86 ~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (273)
T PLN02211 86 NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTSAIIK 165 (273)
T ss_pred CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCceeeeC
Confidence 4689999999999999999999999999999887643210 0000 0000000000 00 0000 0
Q ss_pred ----Cc-cCCCCCChhhH--HHHhhcCc---c------cccCCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004141 676 ----KD-SFTESPSVEDL--TRFHSKSP---I------SHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 676 ----~~-~~~~~~~~~~~--~~~~~~sp---~------~~~~~i-~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
.. .+...+..... .......+ + ....++ ++|+++|.|++|..+|++..+.+.+.+.. .+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~----~~ 241 (273)
T PLN02211 166 KEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPP----SQ 241 (273)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCc----cE
Confidence 00 01111110000 00111011 1 112344 68999999999999999988888877643 36
Q ss_pred EEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 739 VIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 739 ~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
++.++ +||...... ..++...|.+..
T Consensus 242 ~~~l~-~gH~p~ls~-P~~~~~~i~~~a 267 (273)
T PLN02211 242 VYELE-SDHSPFFST-PFLLFGLLIKAA 267 (273)
T ss_pred EEEEC-CCCCccccC-HHHHHHHHHHHH
Confidence 77775 799765433 334445554443
No 113
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.50 E-value=2e-12 Score=131.68 Aligned_cols=243 Identities=18% Similarity=0.158 Sum_probs=151.5
Q ss_pred CCCceEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 516 GAQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~---~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
.||..+..-++.+... ......|+||++||-.+.+........+..+.++||.|+++|.||.++..-.. +.-+
T Consensus 101 ~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtT----pr~f 176 (409)
T KOG1838|consen 101 SDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTT----PRLF 176 (409)
T ss_pred CCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCC----Ccee
Confidence 3455565556655432 12356799999999776654444455667778999999999999965542221 1122
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC---CceeEEEecCCccch-hhhhcCCCCCcchh-
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNL-ALMVGTTDIPDWCY- 667 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~p~~~~-~~~~~~~~~~~~~~- 667 (771)
.....+|+.++++++.++. ...++..+|.||||.+.+.++++.. .+.+|+++.+|.--. ....-......+.+
T Consensus 177 ~ag~t~Dl~~~v~~i~~~~--P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~~~~~~~~~y~ 254 (409)
T KOG1838|consen 177 TAGWTEDLREVVNHIKKRY--PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSIETPLYRRFYN 254 (409)
T ss_pred ecCCHHHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHHhcccchHHHH
Confidence 2335799999999999985 3457999999999999999988643 355666666664311 00000000000000
Q ss_pred ---------------------------------hhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCC
Q 004141 668 ---------------------------------VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 714 (771)
Q Consensus 668 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~ 714 (771)
...+.........+.+ ...+.|.+.|+..++++|++|+|+|+..+
T Consensus 255 ~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~--~~deYY~~aSs~~~v~~I~VP~L~ina~D 332 (409)
T KOG1838|consen 255 RALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFK--SVDEYYKKASSSNYVDKIKVPLLCINAAD 332 (409)
T ss_pred HHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCC--cHHHHHhhcchhhhcccccccEEEEecCC
Confidence 0011111111112222 23456778899999999999999999999
Q ss_pred CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC---ChHHHHHH-HHHHHHHh
Q 004141 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ---SDFESFLN-IGLWFKKY 769 (771)
Q Consensus 715 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~---~~~~~~~~-i~~fl~~~ 769 (771)
|+++|.+ +.-.-+ ...+..+-+++-.-+||--.... +...++.. +.+||.+.
T Consensus 333 DPv~p~~-~ip~~~--~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 333 DPVVPEE-AIPIDD--IKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred CCCCCcc-cCCHHH--HhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHH
Confidence 9999875 222222 22345677888888899533222 44466666 88888754
No 114
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.48 E-value=1.4e-13 Score=138.60 Aligned_cols=215 Identities=15% Similarity=0.144 Sum_probs=107.2
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC----------------CCCcchHHHHHHHHCCcEEEEECCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV----------------SLSSYSKSLAFLSSVGYSLLIVNYR 575 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~----------------~~~~~~~~~~~la~~G~~Vv~~d~r 575 (771)
.+...++..+.++++.|++. .++.|+||++||-+... ....-......|+++||+|+++|.+
T Consensus 92 ~f~~~p~~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~ 169 (390)
T PF12715_consen 92 EFNTTPGSRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDAL 169 (390)
T ss_dssp EE--STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--T
T ss_pred EEEccCCeeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccc
Confidence 34455678899999999853 68899999999833211 0001123567899999999999998
Q ss_pred CCCCCChhhhhc----------------CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC
Q 004141 576 GSLGFGEEALQS----------------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 576 G~~~~g~~~~~~----------------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
|-++.+.-.... .-..+......|.+.+++||..++.+|++||+++|+||||+.++++++. .+
T Consensus 170 g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaAL-Dd 248 (390)
T PF12715_consen 170 GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAAL-DD 248 (390)
T ss_dssp TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH--T
T ss_pred cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHc-ch
Confidence 844432210000 0011112224466779999999999999999999999999999999998 46
Q ss_pred ceeEEEecCCccchhh---hhcCCCCCcc-hhhhh--ccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeC
Q 004141 640 KFVAAAARNPLCNLAL---MVGTTDIPDW-CYVES--YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713 (771)
Q Consensus 640 ~~~~~v~~~p~~~~~~---~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~ 713 (771)
++++.|+.+-++.... .....+.... .+... ....++.++. +.++...-.. ..|+|++.|.
T Consensus 249 RIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~-----D~PdIasliA--------PRPll~~nG~ 315 (390)
T PF12715_consen 249 RIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYF-----DFPDIASLIA--------PRPLLFENGG 315 (390)
T ss_dssp T--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC-------HHHHHHTTT--------TS-EEESS-B
T ss_pred hhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhC-----ccHHHHHHhC--------CCcchhhcCC
Confidence 7888776655443221 1111110000 00000 0000111111 1111111111 2589999999
Q ss_pred CCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004141 714 QDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 714 ~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
.|..+|. .+.-|+.+ .+..+++++.||..
T Consensus 316 ~Dklf~i--V~~AY~~~-~~p~n~~~~~~p~~ 344 (390)
T PF12715_consen 316 KDKLFPI--VRRAYAIM-GAPDNFQIHHYPKF 344 (390)
T ss_dssp -HHHHHH--HHHHHHHT-T-GGGEEE---GGG
T ss_pred cccccHH--HHHHHHhc-CCCcceEEeecccc
Confidence 9998864 33444332 23446888888863
No 115
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.47 E-value=4.7e-13 Score=138.07 Aligned_cols=220 Identities=19% Similarity=0.229 Sum_probs=135.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHC-CcEEEEECCCCCCCCCh-hhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGE-EALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~-G~~Vv~~d~rG~~~~g~-~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
+..|.||++||.+.+ ...|...+..|... |+.|+++|..| +|. +... .-......+....+..+....
T Consensus 56 ~~~~pvlllHGF~~~--~~~w~~~~~~L~~~~~~~v~aiDl~G---~g~~s~~~----~~~~y~~~~~v~~i~~~~~~~- 125 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGAS--SFSWRRVVPLLSKAKGLRVLAIDLPG---HGYSSPLP----RGPLYTLRELVELIRRFVKEV- 125 (326)
T ss_pred CCCCcEEEeccccCC--cccHhhhccccccccceEEEEEecCC---CCcCCCCC----CCCceehhHHHHHHHHHHHhh-
Confidence 467889999996654 55777777777554 69999999999 442 2111 111144566666666555443
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEE---ecCCccchhhhh--------c----CCC--------CCcchhhh
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA---ARNPLCNLALMV--------G----TTD--------IPDWCYVE 669 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v---~~~p~~~~~~~~--------~----~~~--------~~~~~~~~ 669 (771)
...++.++|||+||++++.+|+.+|+.++.++ +.++........ . ... .+.-.+.+
T Consensus 126 -~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 204 (326)
T KOG1454|consen 126 -FVEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSE 204 (326)
T ss_pred -cCcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeH
Confidence 23459999999999999999999999999999 554433211000 0 000 00000000
Q ss_pred hccCCCCccCCC-CCChhhH--------------H---HH----h--hcCcccccCCCC-CcEEEEeeCCCCccCcHHHH
Q 004141 670 SYGSKGKDSFTE-SPSVEDL--------------T---RF----H--SKSPISHISKVK-TPTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 670 ~~~~~~~~~~~~-~~~~~~~--------------~---~~----~--~~sp~~~~~~i~-~P~lii~G~~D~~vp~~~~~ 724 (771)
.+.......+.. ....+.. . .+ . .......+.++. +|+||++|+.|+++|.+.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~ 284 (326)
T KOG1454|consen 205 GLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAE 284 (326)
T ss_pred hhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHH
Confidence 000000000000 0000000 0 00 0 123334566776 99999999999999999777
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
.+.+.+ .++++++++++||.... +..+.+...|..|+.++.
T Consensus 285 ~~~~~~----pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 285 ELKKKL----PNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARLR 325 (326)
T ss_pred HHHhhC----CCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHhc
Confidence 776665 34899999999997765 667788999999998763
No 116
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.46 E-value=1e-12 Score=120.44 Aligned_cols=199 Identities=22% Similarity=0.362 Sum_probs=135.7
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCC-C---CCCCChhhhhcC-CCCcccc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-G---SLGFGEEALQSL-PGKVGSQ 595 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~r-G---~~~~g~~~~~~~-~~~~~~~ 595 (771)
+.+++.... .+ + .+||.+.--.+.. .+.-+..+..++..||.|++||+- | +.+-..+.+... .+.-...
T Consensus 28 ldaYv~gs~---~~-~-~~li~i~DvfG~~-~~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~ 101 (242)
T KOG3043|consen 28 LDAYVVGST---SS-K-KVLIVIQDVFGFQ-FPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPK 101 (242)
T ss_pred eeEEEecCC---CC-C-eEEEEEEeeeccc-cHHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCccc
Confidence 566666533 11 2 4555554321111 223455678889999999999964 4 121111111111 1111223
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
...++...++||..++ +..+|+++|++|||-.+..+....| +|.++++..|..-
T Consensus 102 ~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~~----------------------- 155 (242)
T KOG3043|consen 102 IWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSFV----------------------- 155 (242)
T ss_pred chhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEEeeccch-hheeeeEecCCcC-----------------------
Confidence 4789999999999774 6789999999999999988888766 7888887666420
Q ss_pred CccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC-CEEEEEeCCCCccCCC---
Q 004141 676 KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHGIER--- 751 (771)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~~~~--- 751 (771)
. ...+..+++|+|++.++.|..+|+....++-+.|++... ..++.+|++.+|++..
T Consensus 156 --------d------------~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~ 215 (242)
T KOG3043|consen 156 --------D------------SADIANVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRA 215 (242)
T ss_pred --------C------------hhHHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhcc
Confidence 0 122456789999999999999999999999998887532 3578999999999863
Q ss_pred ----C---CChHHHHHHHHHHHHHhhC
Q 004141 752 ----P---QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 752 ----~---~~~~~~~~~i~~fl~~~L~ 771 (771)
| ...++.++.++.||++||+
T Consensus 216 ~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 216 NISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 2 2245678899999999984
No 117
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.46 E-value=4.6e-13 Score=129.99 Aligned_cols=174 Identities=20% Similarity=0.254 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC-----CCCcchhh-hh
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-----DIPDWCYV-ES 670 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~-----~~~~~~~~-~~ 670 (771)
++-+..|++||.+++.+++++|+|+|.|.||-+|+.++..+| .++++|+.+|..-........ .++..... ..
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 456789999999999999999999999999999999999988 799999988854322111000 01100000 00
Q ss_pred ccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcH-HHHHHHHHHHhCCCC--EEEEEeCCCCc
Q 004141 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKGVE--TKVIVFPNDVH 747 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~-~~~~~~~~l~~~g~~--~~~~~~~~~~H 747 (771)
........+...........-......-.+.++++|+|++.|++|...|.. .++.+.++|+++|.+ ++++.||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 000000000000000000000111122346778999999999999998854 455777888888765 78999999999
Q ss_pred cCCCC---------------------------CChHHHHHHHHHHHHHhhC
Q 004141 748 GIERP---------------------------QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 748 ~~~~~---------------------------~~~~~~~~~i~~fl~~~L~ 771 (771)
.+..+ ....+.|..+++||+++|+
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76422 1357889999999999985
No 118
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.45 E-value=1e-12 Score=139.21 Aligned_cols=198 Identities=14% Similarity=0.120 Sum_probs=113.8
Q ss_pred chHHHH---HHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHH
Q 004141 555 YSKSLA---FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLT 630 (771)
Q Consensus 555 ~~~~~~---~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a 630 (771)
|..++. .|...+|.|+++|+|| +|.+. ... ....+..+.+..+++.- +.++ +.|+||||||+++
T Consensus 85 w~~~v~~~~~L~~~~~~Vi~~Dl~G---~g~s~----~~~---~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA 152 (343)
T PRK08775 85 WEGLVGSGRALDPARFRLLAFDFIG---ADGSL----DVP---IDTADQADAIALLLDAL--GIARLHAFVGYSYGALVG 152 (343)
T ss_pred chhccCCCCccCccccEEEEEeCCC---CCCCC----CCC---CCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHH
Confidence 444554 4544579999999998 44332 111 12344444444444432 3344 5799999999999
Q ss_pred HHHHhhCCCceeEEEecCCccchhh----hhc-------CC-C--CC-c------chhhhhccC-C-CCccCCCC-----
Q 004141 631 THLIGQAPDKFVAAAARNPLCNLAL----MVG-------TT-D--IP-D------WCYVESYGS-K-GKDSFTES----- 682 (771)
Q Consensus 631 ~~~a~~~p~~~~~~v~~~p~~~~~~----~~~-------~~-~--~~-~------~~~~~~~~~-~-~~~~~~~~----- 682 (771)
+.++.++|++++++|+.++...... ... .. . .. . +.....+.. . ....+...
T Consensus 153 ~~~A~~~P~~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
T PRK08775 153 LQFASRHPARVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVIN 232 (343)
T ss_pred HHHHHHChHhhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccC
Confidence 9999999999999999887532110 000 00 0 00 0 000000000 0 00000000
Q ss_pred ----CChhhH------HHHhhcCc-------------ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004141 683 ----PSVEDL------TRFHSKSP-------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 683 ----~~~~~~------~~~~~~sp-------------~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
...... ......++ ...+.++++|+|+++|++|..+|++...++.+.+.. ..++
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l 309 (343)
T PRK08775 233 GRVRVAAEDYLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGP---RGSL 309 (343)
T ss_pred CCccchHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC---CCeE
Confidence 000000 00000000 112567899999999999999999888887776632 3688
Q ss_pred EEeCC-CCccCCCCCChHHHHHHHHHHHHH
Q 004141 740 IVFPN-DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 740 ~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+++++ +||.....+ ...+...+.+||++
T Consensus 310 ~~i~~~aGH~~~lE~-Pe~~~~~l~~FL~~ 338 (343)
T PRK08775 310 RVLRSPYGHDAFLKE-TDRIDAILTTALRS 338 (343)
T ss_pred EEEeCCccHHHHhcC-HHHHHHHHHHHHHh
Confidence 89985 999877544 45888889999975
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.44 E-value=1.3e-10 Score=121.09 Aligned_cols=247 Identities=15% Similarity=0.093 Sum_probs=142.2
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
....+|+|||+.+++..... ..++.++ ..++..+.+...... ..+.|+|||+.|+....
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~---~~v~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~g~~l~~~~~------- 92 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDS---DTIQVIDLATGEVIGTLPSGPDP----------ELFALHPNGKILYIANE------- 92 (300)
T ss_pred CCceEECCCCCEEEEEECCC---CeEEEEECCCCcEEEeccCCCCc----------cEEEECCCCCEEEEEcC-------
Confidence 45689999999875543322 2344444 334333322222222 47889999997765422
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
....|++||+.+++.... .+....+..+.|+|||+. ++
T Consensus 93 ------------------------------------~~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~dg~~----l~ 130 (300)
T TIGR03866 93 ------------------------------------DDNLVTVIDIETRKVLAE--IPVGVEPEGMAVSPDGKI----VV 130 (300)
T ss_pred ------------------------------------CCCeEEEEECCCCeEEeE--eeCCCCcceEEECCCCCE----EE
Confidence 125799999988765433 233334567899999997 77
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCC
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 339 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~ 339 (771)
+.+.. ...++.+|. .+++...............|+|||++|++....+
T Consensus 131 ~~~~~--------------~~~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~- 178 (300)
T TIGR03866 131 NTSET--------------TNMAHFIDT-----------------KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG- 178 (300)
T ss_pred EEecC--------------CCeEEEEeC-----------------CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC-
Confidence 65421 113555676 4444322111222345689999999887664332
Q ss_pred CCCCCccccccceeeecCCCCCCC-CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 340 VDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 340 ~~~g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
..|+++|+.+++... +.... ....++ ......+.|+|||+.+++..... ..+..+
T Consensus 179 ---------~~v~i~d~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~ 234 (300)
T TIGR03866 179 ---------GTVSVIDVATRKVIKKITFEI-----------PGVHPE--AVQPVGIKLTKDGKTAFVALGPA--NRVAVV 234 (300)
T ss_pred ---------CEEEEEEcCcceeeeeeeecc-----------cccccc--cCCccceEECCCCCEEEEEcCCC--CeEEEE
Confidence 358899988765311 11000 000000 00123567999999876654333 357777
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
|+.++++..............|+++|+.|+..... -..|.+.++.++
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~i~v~d~~~~ 281 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV---SNDVSVIDVAAL 281 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC---CCeEEEEECCCC
Confidence 98888876543322334556899999988755321 224777776654
No 120
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.41 E-value=4e-12 Score=134.62 Aligned_cols=244 Identities=11% Similarity=0.084 Sum_probs=142.3
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC----------CCcchH-HH---HHHHHCCcEEEEECCCCCCC-----
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS----------LSSYSK-SL---AFLSSVGYSLLIVNYRGSLG----- 579 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~----------~~~~~~-~~---~~la~~G~~Vv~~d~rG~~~----- 579 (771)
.+|.+..|-.. ...+.++||++|+-.++.- ...|.. .+ ..+--..|-||++|..|++.
T Consensus 41 ~~~~Y~t~G~l---n~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~ 117 (389)
T PRK06765 41 VQMGYETYGTL---NRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPN 117 (389)
T ss_pred ceEEEEecccc---CCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCC
Confidence 34554455433 2345699999998443210 012221 11 12334569999999998642
Q ss_pred CCh---hhhhcCCC-----CccccchhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHhhCCCceeEEEecCCc
Q 004141 580 FGE---EALQSLPG-----KVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 580 ~g~---~~~~~~~~-----~~~~~~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~ 650 (771)
+|. ...+...+ ++....+.|+.+++..+++.- +-+++. ++||||||++++.++.++|++++.+|+++..
T Consensus 118 ~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~l--gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~ 195 (389)
T PRK06765 118 VITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSL--GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGN 195 (389)
T ss_pred CCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecC
Confidence 122 11111111 233356888888888777763 346775 9999999999999999999999999887653
Q ss_pred cchhhh------h----cCCCCCcch---h---------------------------hhhccCCCCccCC---CCCChhh
Q 004141 651 CNLALM------V----GTTDIPDWC---Y---------------------------VESYGSKGKDSFT---ESPSVED 687 (771)
Q Consensus 651 ~~~~~~------~----~~~~~~~~~---~---------------------------~~~~~~~~~~~~~---~~~~~~~ 687 (771)
...... . .....+.|. | ...+......... .......
T Consensus 196 ~~~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~ 275 (389)
T PRK06765 196 PQNDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTS 275 (389)
T ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhh
Confidence 211000 0 000111110 0 0000100000000 0000000
Q ss_pred HHHHh------------------------hc-------CcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC
Q 004141 688 LTRFH------------------------SK-------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 688 ~~~~~------------------------~~-------sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~ 736 (771)
.+.|. .. +....+.++++|+|+|+|+.|..+|++.++++.+.+...+.+
T Consensus 276 ~e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~ 355 (389)
T PRK06765 276 FEKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKY 355 (389)
T ss_pred HHHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCC
Confidence 01110 00 123345678999999999999999999999999998876667
Q ss_pred EEEEEeCC-CCccCCCCCChHHHHHHHHHHHHH
Q 004141 737 TKVIVFPN-DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 737 ~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++++++++ +||..... ...++...+.+||++
T Consensus 356 a~l~~I~s~~GH~~~le-~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 356 AEVYEIESINGHMAGVF-DIHLFEKKIYEFLNR 387 (389)
T ss_pred eEEEEECCCCCcchhhc-CHHHHHHHHHHHHcc
Confidence 89999986 89976644 445778888899875
No 121
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=5.7e-12 Score=123.01 Aligned_cols=126 Identities=15% Similarity=0.208 Sum_probs=83.2
Q ss_pred cCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004141 212 YAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
+.+....++|+|+....+ +.+. +....-+.++.||||++. |+-.+. +. .|-+++-.
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rm--tgHq~lVn~V~fSPd~r~----IASaSF-------------Dk--SVkLW~g~- 397 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRM--TGHQALVNHVSFSPDGRY----IASASF-------------DK--SVKLWDGR- 397 (480)
T ss_pred EEecCCceEEEecccccccchhhh--hchhhheeeEEECCCccE----EEEeec-------------cc--ceeeeeCC-
Confidence 345556899999864332 3455 445556889999999998 888772 22 34444430
Q ss_pred ccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee
Q 004141 290 YKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 369 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 369 (771)
.+.-...+..+-..+...+||.|.+.|+-.+.+ ..|.+|++.+.+..+-..+..
T Consensus 398 ---------------tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD-----------sTLKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 398 ---------------TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD-----------STLKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred ---------------CcchhhhhhhccceeEEEEeccCccEEEEcCCC-----------ceEEEEEeeeeeecccCCCCC
Confidence 333455566677778899999999977765554 358888988876543222221
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEE
Q 004141 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~ 404 (771)
..+..+.|||||.++.
T Consensus 452 -------------------DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 452 -------------------DEVFAVDWSPDGQRVA 467 (480)
T ss_pred -------------------ceEEEEEecCCCceee
Confidence 1245678999999663
No 122
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.37 E-value=8.2e-12 Score=155.08 Aligned_cols=224 Identities=17% Similarity=0.220 Sum_probs=132.3
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC-C--CccccchhhHHHHHHHHHHcCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-G--KVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~-~--~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
..|+||++||.+.+. ..|...+..|. .+|.|+++|+|| ||.+...... . ......++++.+.+..++++
T Consensus 1370 ~~~~vVllHG~~~s~--~~w~~~~~~L~-~~~rVi~~Dl~G---~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~-- 1441 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTG--EDWIPIMKAIS-GSARCISIDLPG---HGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH-- 1441 (1655)
T ss_pred CCCeEEEECCCCCCH--HHHHHHHHHHh-CCCEEEEEcCCC---CCCCCCccccccccccccCCHHHHHHHHHHHHHH--
Confidence 457899999977663 46777777775 469999999999 4443221100 0 01122355555555555554
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh--hh--cCCCCCcc----------hhhhhccC-CCCc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--MV--GTTDIPDW----------CYVESYGS-KGKD 677 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~--~~--~~~~~~~~----------~~~~~~~~-~~~~ 677 (771)
++.+++.|+||||||.+++.++.++|++++++|+.++...... .. .......+ .+...+.. ....
T Consensus 1442 l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 1521 (1655)
T PLN02980 1442 ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWK 1521 (1655)
T ss_pred hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHHhh
Confidence 3457899999999999999999999999999988775422110 00 00000000 00000000 0000
Q ss_pred cCCCCC-------------ChhhHH-HHhh------cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC---
Q 004141 678 SFTESP-------------SVEDLT-RFHS------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG--- 734 (771)
Q Consensus 678 ~~~~~~-------------~~~~~~-~~~~------~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g--- 734 (771)
.....+ ...... .+.. .+....+.++++|+|+++|++|..++ +.+.++.+.+.+..
T Consensus 1522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~ 1600 (1655)
T PLN02980 1522 SLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESG 1600 (1655)
T ss_pred hhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHcccccccc
Confidence 000000 000000 0000 11123467889999999999999875 66677777665421
Q ss_pred -----CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 735 -----VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 735 -----~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
..+++++++++||.... +....+.+.+.+||++.
T Consensus 1601 ~~~~~~~a~lvvI~~aGH~~~l-E~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1601 NDKGKEIIEIVEIPNCGHAVHL-ENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred ccccccceEEEEECCCCCchHH-HCHHHHHHHHHHHHHhc
Confidence 12689999999998764 44557888999999863
No 123
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.37 E-value=3.4e-11 Score=115.84 Aligned_cols=130 Identities=22% Similarity=0.188 Sum_probs=92.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC-----
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL----- 588 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~----- 588 (771)
...|...++++|.|++.+ ...|+||++||+.++.... .....-....+.||.|+.||- +...|....
T Consensus 41 ~~~g~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg-----~~~~wn~~~~~~~~ 113 (312)
T COG3509 41 DVNGLKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDG-----YDRAWNANGCGNWF 113 (312)
T ss_pred ccCCCccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCc-----cccccCCCcccccC
Confidence 445778899999998743 3349999999976653211 111122233568999999952 222221111
Q ss_pred ---CCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 589 ---PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 589 ---~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
....+..++..+.+.+..|+.+..+|+.||++.|.|.||.|+..++..+|++|.++..+++..
T Consensus 114 ~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 114 GPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 112334457778888899999988999999999999999999999999999999888776654
No 124
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.35 E-value=4.5e-11 Score=121.29 Aligned_cols=309 Identities=16% Similarity=0.130 Sum_probs=150.3
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004141 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
+..++||+++.|..+. .+..+++++++ ..++.+|||..+- .......+||+.+.++|+.+. ..+
T Consensus 41 ~~ft~dG~kllF~s~~------dg~~nly~lDL--~t~~i~QLTdg~g----~~~~g~~~s~~~~~~~Yv~~~----~~l 104 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDF------DGNRNLYLLDL--ATGEITQLTDGPG----DNTFGGFLSPDDRALYYVKNG----RSL 104 (386)
T ss_dssp --B-TTS-EEEEEE-T------TSS-EEEEEET--TT-EEEE---SS-----B-TTT-EE-TTSSEEEEEETT----TEE
T ss_pred CCcCCCCCEEEEEecc------CCCcceEEEEc--ccCEEEECccCCC----CCccceEEecCCCeEEEEECC----CeE
Confidence 3447899999997763 25678999777 4458899998751 123347889999999998754 368
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceee--cCCCCeEEEEecCCCCCC--CCcc---------------CCCC
Q 004141 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW--NSDETLIAYVAEEPSPSK--PTFS---------------LGST 186 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~w--SpDg~~la~~~~~~~~~~--~~~~---------------~~~~ 186 (771)
+.++ ...+.+.+..++.... +.-.| ..|+++++.+........ ..|. ....
T Consensus 105 ~~vdL~T~e~~~vy~~p~~~~---------g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 105 RRVDLDTLEERVVYEVPDDWK---------GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTT--EEEEEE--TTEE---------EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCcCcEEEEEECCcccc---------cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 8888 5666666666665432 33455 567998887654332211 1110 0111
Q ss_pred CCCC--CCccCCCCCCcccccCCcCcccC-------CccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 187 KGGS--SDKDCNSWKGQGDWEEDWGETYA-------GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 187 ~~~~--~~~~~~~~~~~~~~~~d~g~~~~-------~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.++. .......|.+...|+|.-..++. ..-...||+++.+++..+.+........++.-.|+|||+.
T Consensus 176 ~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~---- 251 (386)
T PF14583_consen 176 KTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST---- 251 (386)
T ss_dssp TT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-----
T ss_pred CCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE----
Confidence 1121 12234566666656553322211 1123589999999999888843333446778899999999
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|+|.+...+. ....|+.+|+ .+++.+.+..-+ ......-|+||+.+|=-..+
T Consensus 252 i~y~~~~~~~----------~~~~i~~~d~-----------------~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 252 IWYDSYTPGG----------QDFWIAGYDP-----------------DTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEEETTT------------EEEEEE-T-----------------TT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEeecCCC----------CceEEEeeCC-----------------CCCCceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 9998742221 1225777887 677666654333 24466678999965533332
Q ss_pred CCCCC----CCc-cccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004141 338 SSVDS----GAH-SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 338 ~~~~~----g~~-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~ 412 (771)
..+.. |.. ....-||++++..+....+.... ....+.. |......+.++|||||+.|+|.++..|.
T Consensus 304 ~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~-~sw~v~~--------~~~q~~hPhp~FSPDgk~VlF~Sd~~G~ 374 (386)
T PF14583_consen 304 APVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHD-TSWKVLD--------GDRQVTHPHPSFSPDGKWVLFRSDMEGP 374 (386)
T ss_dssp -----------------EEEEEETTTTEEEEEEE--------BT--------TBSSTT----EE-TTSSEEEEEE-TTSS
T ss_pred CCccccccccceecCCcEEEEeccccCceeeeeecc-Ccceeec--------CCCccCCCCCccCCCCCEEEEECCCCCC
Confidence 11100 000 01124667777665543221110 0000010 0011124688999999999999999999
Q ss_pred eEEEEEECC
Q 004141 413 QVIISVNVS 421 (771)
Q Consensus 413 ~~l~~~d~~ 421 (771)
..||.+++.
T Consensus 375 ~~vY~v~i~ 383 (386)
T PF14583_consen 375 PAVYLVEIP 383 (386)
T ss_dssp -EEEEEE--
T ss_pred ccEEEEeCc
Confidence 999999874
No 125
>PRK05855 short chain dehydrogenase; Validated
Probab=99.32 E-value=1.3e-11 Score=141.60 Aligned_cols=233 Identities=10% Similarity=0.103 Sum_probs=122.4
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++++..+-+ ...|+||++||.+.. ...|...+..| ..||.|+++|+|| +|.+.... ....
T Consensus 9 ~~~g~~l~~~~~g~------~~~~~ivllHG~~~~--~~~w~~~~~~L-~~~~~Vi~~D~~G---~G~S~~~~---~~~~ 73 (582)
T PRK05855 9 SSDGVRLAVYEWGD------PDRPTVVLVHGYPDN--HEVWDGVAPLL-ADRFRVVAYDVRG---AGRSSAPK---RTAA 73 (582)
T ss_pred eeCCEEEEEEEcCC------CCCCeEEEEcCCCch--HHHHHHHHHHh-hcceEEEEecCCC---CCCCCCCC---cccc
Confidence 34677887665532 235889999997655 34577777777 6789999999999 55443211 1111
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecC-CccchhhhhcCCCC---------
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARN-PLCNLALMVGTTDI--------- 662 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~-p~~~~~~~~~~~~~--------- 662 (771)
...+++.+.+..+++.-.. ..++.|+||||||.+++.++.+. +..+..++..+ |..+..........
T Consensus 74 ~~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (582)
T PRK05855 74 YTLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLRRPTPRRLA 152 (582)
T ss_pred cCHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhcccccchhhhh
Confidence 2344444444444433111 23499999999999998777652 23333333322 21110000000000
Q ss_pred -------Ccchh-------------hhhccC---CCCccCCCCCCh------------hhHHHHh----hcCcccccCCC
Q 004141 663 -------PDWCY-------------VESYGS---KGKDSFTESPSV------------EDLTRFH----SKSPISHISKV 703 (771)
Q Consensus 663 -------~~~~~-------------~~~~~~---~~~~~~~~~~~~------------~~~~~~~----~~sp~~~~~~i 703 (771)
..+.. ...... .........+.. .....+. ..........+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (582)
T PRK05855 153 RALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRERYT 232 (582)
T ss_pred HHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCccCCc
Confidence 00000 000000 000000000000 0000000 00011123457
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 704 ~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
++|+|+++|++|..+|++....+.+.+. ..++++++ +||..... ....+...+.+|+.+.
T Consensus 233 ~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~~e-~p~~~~~~i~~fl~~~ 292 (582)
T PRK05855 233 DVPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLPMS-HPQVLAAAVAEFVDAV 292 (582)
T ss_pred cCceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcchhh-ChhHHHHHHHHHHHhc
Confidence 8999999999999999888777665443 25666665 68977644 3447778888898753
No 126
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.32 E-value=1.5e-12 Score=116.45 Aligned_cols=208 Identities=17% Similarity=0.194 Sum_probs=129.6
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCccc--cchhhHHHHHHHHHHcCCCC
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS--QDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~--~~~~D~~~~i~~l~~~~~~d 614 (771)
-.|+++.|.-++. ...|...+..+ ...-+.|+++|.|| ||.+-. +.+... ...+|..++++.+... +
T Consensus 43 ~~iLlipGalGs~-~tDf~pql~~l~k~l~~TivawDPpG---YG~SrP---P~Rkf~~~ff~~Da~~avdLM~aL---k 112 (277)
T KOG2984|consen 43 NYILLIPGALGSY-KTDFPPQLLSLFKPLQVTIVAWDPPG---YGTSRP---PERKFEVQFFMKDAEYAVDLMEAL---K 112 (277)
T ss_pred ceeEecccccccc-cccCCHHHHhcCCCCceEEEEECCCC---CCCCCC---CcccchHHHHHHhHHHHHHHHHHh---C
Confidence 3577777854443 44666655443 33449999999999 776532 111111 1246777777766543 5
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccch-----hhhhcCCCCCcchh------hhhccCCCCccCCCCC
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-----ALMVGTTDIPDWCY------VESYGSKGKDSFTESP 683 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~-----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 683 (771)
.+++.|+|+|-||..|+.+|+++++.+...|+.++..-. ..+-+..+...|.. ...|+.+.
T Consensus 113 ~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~-------- 184 (277)
T KOG2984|consen 113 LEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPET-------- 184 (277)
T ss_pred CCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHH--------
Confidence 688999999999999999999999988777766553321 12223333333421 11111100
Q ss_pred ChhhHHHHh-------hc---C-cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004141 684 SVEDLTRFH-------SK---S-PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 684 ~~~~~~~~~-------~~---s-p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
....++.+- .. + .-..+.+++||+||+||+.|+.++-.+.--+...+.- .++.++|+++|++...
T Consensus 185 f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~----a~~~~~peGkHn~hLr 260 (277)
T KOG2984|consen 185 FRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSL----AKVEIHPEGKHNFHLR 260 (277)
T ss_pred HHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhccc----ceEEEccCCCcceeee
Confidence 001111111 00 0 1134788999999999999999987775544443332 6899999999998865
Q ss_pred CChHHHHHHHHHHHHH
Q 004141 753 QSDFESFLNIGLWFKK 768 (771)
Q Consensus 753 ~~~~~~~~~i~~fl~~ 768 (771)
-. .++...+++||+.
T Consensus 261 ya-~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 261 YA-KEFNKLVLDFLKS 275 (277)
T ss_pred ch-HHHHHHHHHHHhc
Confidence 54 4788889999975
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.29 E-value=1.2e-09 Score=113.65 Aligned_cols=204 Identities=12% Similarity=0.098 Sum_probs=117.2
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.....|+|||+.++.....+ + .+..++ ..+............ ..+.|+|||+.|++.....
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~-~--~l~~~d~~~~~~~~~~~~~~~~----------~~~~~~~dg~~l~~~~~~~----- 136 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDD-N--LVTVIDIETRKVLAEIPVGVEP----------EGMAVSPDGKIVVNTSETT----- 136 (300)
T ss_pred ccEEEECCCCCEEEEEcCCC-C--eEEEEECCCCeEEeEeeCCCCc----------ceEEECCCCCEEEEEecCC-----
Confidence 45678999999875543222 2 344333 222222222222222 4789999999988864321
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
..++++|..+++.... .........+.|+|||+. |+
T Consensus 137 --------------------------------------~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~ 172 (300)
T TIGR03866 137 --------------------------------------NMAHFIDTKTYEIVDN--VLVDQRPRFAEFTADGKE----LW 172 (300)
T ss_pred --------------------------------------CeEEEEeCCCCeEEEE--EEcCCCccEEEECCCCCE----EE
Confidence 3456678777665433 222234567899999997 76
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCC-------CccccceeecCCCCEE
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFL 331 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~-------~~~~~~p~~SpDG~~l 331 (771)
+.+. ....|+++|+ .+++. ..++.. ........|||||+.+
T Consensus 173 ~~~~--------------~~~~v~i~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 173 VSSE--------------IGGTVSVIDV-----------------ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred EEcC--------------CCCEEEEEEc-----------------CcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 6541 2236888887 44433 333211 1123457899999986
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~ 411 (771)
+..... ...|.++|+.+++.... ... . ..+..++|+|||++|+......
T Consensus 222 ~~~~~~----------~~~i~v~d~~~~~~~~~----------~~~---~-------~~~~~~~~~~~g~~l~~~~~~~- 270 (300)
T TIGR03866 222 FVALGP----------ANRVAVVDAKTYEVLDY----------LLV---G-------QRVWQLAFTPDEKYLLTTNGVS- 270 (300)
T ss_pred EEEcCC----------CCeEEEEECCCCcEEEE----------EEe---C-------CCcceEEECCCCCEEEEEcCCC-
Confidence 544322 23588999876543211 000 0 1234678999999876554333
Q ss_pred eeEEEEEECCCCcE-EEec
Q 004141 412 SQVIISVNVSSGEL-LRIT 429 (771)
Q Consensus 412 ~~~l~~~d~~tg~~-~~l~ 429 (771)
..|..+|+.+++. .++.
T Consensus 271 -~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 271 -NDVSVIDVAALKVIKSIK 288 (300)
T ss_pred -CeEEEEECCCCcEEEEEE
Confidence 3577778888885 4444
No 128
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.29 E-value=1.8e-10 Score=122.67 Aligned_cols=194 Identities=14% Similarity=0.131 Sum_probs=121.6
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC----cEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G----~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
|.+...++|.|+++. .+++|+|+++||..+... ......+..|.+.| .+|+++|......... ....
T Consensus 191 g~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~-~~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~----el~~--- 261 (411)
T PRK10439 191 GNSRRVWIYTTGDAA-PEERPLAILLDGQFWAES-MPVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQ----ELPC--- 261 (411)
T ss_pred CCceEEEEEECCCCC-CCCCCEEEEEECHHhhhc-CCHHHHHHHHHHcCCCCceEEEEECCCCcccccc----cCCc---
Confidence 566888999998775 568999999999765432 12334556666777 4567887532111100 0110
Q ss_pred ccch-hhHH-HHHHHHHHcCC--CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 594 SQDV-NDVL-TAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 594 ~~~~-~D~~-~~i~~l~~~~~--~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
.... ..+. +.+-++.++.. .|+++.+|+|+||||+.|++++.++|++|.++++.+|.+-+...
T Consensus 262 ~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~~------------- 328 (411)
T PRK10439 262 NADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPHR------------- 328 (411)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCCc-------------
Confidence 0111 1121 23344444433 47889999999999999999999999999999999986421100
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
... ... .....+... ....-...++|-+|+.|..+ .+..+++++.|+++|.++++.+++| ||..
T Consensus 329 -~~~--------~~~-~l~~~l~~~----~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G-GHd~ 392 (411)
T PRK10439 329 -GGQ--------QEG-VLLEQLKAG----EVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG-GHDA 392 (411)
T ss_pred -cCC--------chh-HHHHHHHhc----ccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-CcCH
Confidence 000 000 001111110 01112245888899998654 4678899999999999999999987 6954
No 129
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.29 E-value=4.5e-10 Score=112.85 Aligned_cols=294 Identities=15% Similarity=0.111 Sum_probs=173.3
Q ss_pred CcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-
Q 004141 52 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW- 130 (771)
Q Consensus 52 dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~- 130 (771)
+|.+++++++. +.++.+ ..++...|+-.. +++....++-|++.++...+.+ + .+-+.+
T Consensus 331 ~Gd~ia~VSRG----------kaFi~~--~~~~~~iqv~~~------~~VrY~r~~~~~e~~vigt~dg-D--~l~iyd~ 389 (668)
T COG4946 331 NGDYIALVSRG----------KAFIMR--PWDGYSIQVGKK------GGVRYRRIQVDPEGDVIGTNDG-D--KLGIYDK 389 (668)
T ss_pred CCcEEEEEecC----------cEEEEC--CCCCeeEEcCCC------CceEEEEEccCCcceEEeccCC-c--eEEEEec
Confidence 78888887653 223321 222233444222 4577777888888655433222 2 233344
Q ss_pred cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCc
Q 004141 131 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 210 (771)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 210 (771)
.+++.+++..--..+ ..+..|||||+++...
T Consensus 390 ~~~e~kr~e~~lg~I----------~av~vs~dGK~~vvaN--------------------------------------- 420 (668)
T COG4946 390 DGGEVKRIEKDLGNI----------EAVKVSPDGKKVVVAN--------------------------------------- 420 (668)
T ss_pred CCceEEEeeCCccce----------EEEEEcCCCcEEEEEc---------------------------------------
Confidence 344444443322222 5889999999888742
Q ss_pred ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccc
Q 004141 211 TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 290 (771)
Q Consensus 211 ~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 290 (771)
.+.+||++|+++|+++.+. -....-+..+.|||++++ |+|.-- .|+ -..+|.++|+
T Consensus 421 -----dr~el~vididngnv~~id-kS~~~lItdf~~~~nsr~----iAYafP------~gy-----~tq~Iklydm--- 476 (668)
T COG4946 421 -----DRFELWVIDIDNGNVRLID-KSEYGLITDFDWHPNSRW----IAYAFP------EGY-----YTQSIKLYDM--- 476 (668)
T ss_pred -----CceEEEEEEecCCCeeEec-ccccceeEEEEEcCCcee----EEEecC------cce-----eeeeEEEEec---
Confidence 3478999999999999984 333446789999999999 999742 222 1237888887
Q ss_pred cchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccc----------ccceeeecCCCC
Q 004141 291 KSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT----------DSLHRIDWPTNG 360 (771)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~----------~~l~~~d~~~~~ 360 (771)
++++.-.+|.......+|+|.|||++|+|++.+.- .+.... .+=|++-+..|-
T Consensus 477 --------------~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsL---dPs~Drv~fnf~f~~vskPylv~L~~g~ 539 (668)
T COG4946 477 --------------DGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSL---DPSNDRVIFNFSFQRVSKPYLVVLGRGY 539 (668)
T ss_pred --------------CCCeEEEecCCcccccCcccCCCCcEEEEEecccc---CCCCCeeEEEEEEeeeccceEEEecCCC
Confidence 88899999999999999999999999999998752 111111 112233333221
Q ss_pred CCC---C----cc--ceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC-----------eeEEEEEEC
Q 004141 361 NFS---S----LE--KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS-----------SQVIISVNV 420 (771)
Q Consensus 361 ~~~---~----~~--~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~-----------~~~l~~~d~ 420 (771)
..+ . +. +..++..+-. ....||-. .....+..-..+|+.++|+..-++ ...|-.+|+
T Consensus 540 ~sP~~q~p~~~~~ea~e~dle~ie~--r~eP~pVe-e~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydl 616 (668)
T COG4946 540 YSPFNQPPDEANSEAGEVDLEGIED--RVEPFPVE-EGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDL 616 (668)
T ss_pred CChhhcCchhcCccccceehhhhcc--cccccccC-ccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEec
Confidence 110 0 00 0000000000 01112200 001123445678888888775332 335777788
Q ss_pred CCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 421 SSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 421 ~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
++.+++.+..+. +...+|+|++.+++-- --.|++++.+.
T Consensus 617 etkk~~e~k~nv---ss~rlS~D~s~ilvk~-----d~kl~~f~vek 655 (668)
T COG4946 617 ETKKVEEYKDNV---SSFRLSSDGSKILVKL-----DGKLRLFDVEK 655 (668)
T ss_pred chhhHHHHhccc---ceEEEcCCCCEEEEEe-----CCeEEEEeccc
Confidence 888777776553 3456899999998832 24577777643
No 130
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.29 E-value=2.1e-10 Score=106.05 Aligned_cols=250 Identities=15% Similarity=0.152 Sum_probs=159.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-cceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+....++||++.||..... .-.+|.+..+. .+...++.. .++ ..+.|--||++++..+++...
T Consensus 41 sqVNrLeiTpdk~~LAaa~~q---hvRlyD~~S~np~Pv~t~e~h~kNV----------taVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQ---HVRLYDLNSNNPNPVATFEGHTKNV----------TAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cceeeEEEcCCcchhhhccCC---eeEEEEccCCCCCceeEEeccCCce----------EEEEEeecCeEEEecCCCceE
Confidence 558889999999999875432 23455555332 344444443 344 588899999999999888866
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCC-CCccceEEEecCCCCC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPK-SLSVGQVVWAPLNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~-~~~~~~~~wspDg~~~ 254 (771)
+ .|+..... -.+..........++..|+-+|++++.....|++||+..... ..+ +|+ +..+.+++..|||+.
T Consensus 108 k--IWdlR~~~-~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l--iPe~~~~i~sl~v~~dgsm- 181 (311)
T KOG0315|consen 108 K--IWDLRSLS-CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL--IPEDDTSIQSLTVMPDGSM- 181 (311)
T ss_pred E--EEeccCcc-cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc--CCCCCcceeeEEEcCCCcE-
Confidence 5 45433222 222333446667788888989999999999999999987743 334 444 457889999999997
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEE
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
++-+. ..+..|++++-.. +..+.-....++..+.+.+....+|||+|+||..
T Consensus 182 ---l~a~n---------------nkG~cyvW~l~~~----------~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 182 ---LAAAN---------------NKGNCYVWRLLNH----------QTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred ---EEEec---------------CCccEEEEEccCC----------CccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 77654 2336777776210 0000001123344567788999999999999998
Q ss_pred ecCCCCCCCCccccccceeeecCCC-CC-CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTN-GN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~-~~-~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~ 412 (771)
+.+. .+++|+.++- +. +.++... ...-...||.||.+|+ +.+.++.
T Consensus 234 ssdk-----------tv~iwn~~~~~kle~~l~gh~--------------------rWvWdc~FS~dg~Ylv-Tassd~~ 281 (311)
T KOG0315|consen 234 SSDK-----------TVKIWNTDDFFKLELVLTGHQ--------------------RWVWDCAFSADGEYLV-TASSDHT 281 (311)
T ss_pred cCCc-----------eEEEEecCCceeeEEEeecCC--------------------ceEEeeeeccCccEEE-ecCCCCc
Confidence 8775 3566665442 10 1111110 0123567899999775 5555577
Q ss_pred eEEEEEECCCCcEEEec
Q 004141 413 QVIISVNVSSGELLRIT 429 (771)
Q Consensus 413 ~~l~~~d~~tg~~~~l~ 429 (771)
.+|| ++..++..+..
T Consensus 282 ~rlW--~~~~~k~v~qy 296 (311)
T KOG0315|consen 282 ARLW--DLSAGKEVRQY 296 (311)
T ss_pred eeec--ccccCceeeec
Confidence 7787 45566655443
No 131
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.28 E-value=6.4e-11 Score=128.83 Aligned_cols=216 Identities=15% Similarity=0.166 Sum_probs=125.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc---chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~---~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
++-+.|.|.. .....+.||++||.....+... -...+.+|+++||.|+++|+||.+ .+.. .........
T Consensus 174 ~eLi~Y~P~t--~~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg---~s~~---~~~~ddY~~ 245 (532)
T TIGR01838 174 FQLIQYEPTT--ETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPD---ASQA---DKTFDDYIR 245 (532)
T ss_pred EEEEEeCCCC--CcCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCC---cccc---cCChhhhHH
Confidence 5556777753 2224466888999544332211 235788999999999999999843 3211 111222334
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHH----HHHhhC-CCceeEEEecCCccchhhhhc--------------
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT----HLIGQA-PDKFVAAAARNPLCNLALMVG-------------- 658 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~----~~a~~~-p~~~~~~v~~~p~~~~~~~~~-------------- 658 (771)
+++.++++.+.+. .+.+++.++|||+||.+++ .+++.+ +++++++++.+..+++.....
T Consensus 246 ~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~l~~f~~~~~~~~~e 323 (532)
T TIGR01838 246 DGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGELGVFVDEEIVAGIE 323 (532)
T ss_pred HHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcchhhhhcCchhHHHHH
Confidence 5688888888765 3567899999999999863 234454 778998888877666431100
Q ss_pred -----CCCCCcchhhhhccC---C------CCc-cCCCC-----------------CC---hhhHHHHhhcCcc------
Q 004141 659 -----TTDIPDWCYVESYGS---K------GKD-SFTES-----------------PS---VEDLTRFHSKSPI------ 697 (771)
Q Consensus 659 -----~~~~~~~~~~~~~~~---~------~~~-~~~~~-----------------~~---~~~~~~~~~~sp~------ 697 (771)
...++.+.+...+.. . ... ...+. |. .+....+...+.+
T Consensus 324 ~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~~~~lr~ly~~N~L~~G~~~ 403 (532)
T TIGR01838 324 RQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLRNLYLQNALTTGGLE 403 (532)
T ss_pred HHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHHHHHHHHHHhcCCCcCCeeE
Confidence 000010000000000 0 000 00000 00 0001111222222
Q ss_pred -----cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 698 -----SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 698 -----~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
..+.+|++|+|+++|++|.++|++.+..+.+.+.. .+..+++++||...
T Consensus 404 v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~~----~~~~vL~~sGHi~~ 457 (532)
T TIGR01838 404 VCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLGG----PKTFVLGESGHIAG 457 (532)
T ss_pred ECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCCC----CEEEEECCCCCchH
Confidence 24677899999999999999999988887766542 45668889999643
No 132
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.28 E-value=9.1e-11 Score=124.99 Aligned_cols=129 Identities=18% Similarity=0.172 Sum_probs=101.0
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--c-chHHH---HHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--S-YSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--~-~~~~~---~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
.||.+|...+|+|+ ..++.|+++..+-.|...... . ..... ..++.+||+|+..|.||++++...+.
T Consensus 27 RDGvrL~~dIy~Pa---~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~---- 99 (563)
T COG2936 27 RDGVRLAADIYRPA---GAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFD---- 99 (563)
T ss_pred cCCeEEEEEEEccC---CCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccc----
Confidence 47899999999998 568899999988444433211 1 11112 36899999999999999877655432
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccch
Q 004141 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~ 653 (771)
.+...+.+|-.+.|+||.++++.+ .+|+++|.|++|+..+++|+..|...|+++..++..+.
T Consensus 100 -~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~ 161 (563)
T COG2936 100 -PESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDR 161 (563)
T ss_pred -eeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccc
Confidence 122247899999999999998765 68999999999999999999999999999988887764
No 133
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.26 E-value=3.2e-11 Score=108.43 Aligned_cols=180 Identities=15% Similarity=0.143 Sum_probs=131.3
Q ss_pred CCCcEEEEEcCCCCCCCCCc-chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~-~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
...|+.||+|||.+...... ....+..+..+||+|..++|--++. .....+.+.++...++|+.+.. -
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q----------~htL~qt~~~~~~gv~filk~~-~ 133 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ----------VHTLEQTMTQFTHGVNFILKYT-E 133 (270)
T ss_pred CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc----------cccHHHHHHHHHHHHHHHHHhc-c
Confidence 45699999999988654332 2235566779999999999876432 1233455889999999998864 2
Q ss_pred CCCeEEEEEcChhHHHHHHHHhh-CCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHh
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
+.+++.+-|||.|+.+++.+.++ +..++.++++.++++++..+.+.....+.. .. .+...
T Consensus 134 n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g~dlg---------------Lt----~~~ae 194 (270)
T KOG4627|consen 134 NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESGNDLG---------------LT----ERNAE 194 (270)
T ss_pred cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCccccccC---------------cc----cchhh
Confidence 45678999999999999988764 456899999999999887765544321111 00 01112
Q ss_pred hcCc-ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004141 693 SKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 693 ~~sp-~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
..|+ +.....++.|+|++.|++|.---++|.+.|..++++ ..+..|++.+|.
T Consensus 195 ~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~hy 247 (270)
T KOG4627|consen 195 SVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYDHY 247 (270)
T ss_pred hcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcchh
Confidence 2233 234677889999999999988778999999999987 678899999995
No 134
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.24 E-value=2.5e-09 Score=112.98 Aligned_cols=269 Identities=14% Similarity=0.210 Sum_probs=145.1
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
+++++. .|+..... .....+..+.+..+.+....+...+ ......-..+++|||++|+ +.+..++.-.++.+
T Consensus 45 ~~~~~~-LY~~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~--~~g~~p~~i~~~~~g~~l~-vany~~g~v~v~~l 116 (345)
T PF10282_consen 45 SPDGRR-LYVVNEGS----GDSGGVSSYRIDPDTGTLTLLNSVP--SGGSSPCHIAVDPDGRFLY-VANYGGGSVSVFPL 116 (345)
T ss_dssp -TTSSE-EEEEETTS----STTTEEEEEEEETTTTEEEEEEEEE--ESSSCEEEEEECTTSSEEE-EEETTTTEEEEEEE
T ss_pred EeCCCE-EEEEEccc----cCCCCEEEEEECCCcceeEEeeeec--cCCCCcEEEEEecCCCEEE-EEEccCCeEEEEEc
Confidence 456654 44444321 1345666666755533333332221 1113345788999999985 55554465566667
Q ss_pred ecCCcceEEEecC----CcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 130 WSQSQLEKEFHVP----QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 130 ~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
...+......... .+.....-......++.|+|||++|+.. +.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~-dl-------------------------------- 163 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP-DL-------------------------------- 163 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-ET--------------------------------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-ec--------------------------------
Confidence 6556555443210 0000000000011378999999988543 32
Q ss_pred CCcCcccCCccCceEEEEEccCCc--eeecc--CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004141 206 EDWGETYAGKRQPSLFVININSGE--VQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~--~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
+...|++++++... +.... ..+....+.+++|+|||+. +|+.++. ...
T Consensus 164 ----------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-----~Yv~~e~-------------s~~ 215 (345)
T PF10282_consen 164 ----------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-----AYVVNEL-------------SNT 215 (345)
T ss_dssp ----------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-----EEEEETT-------------TTE
T ss_pred ----------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-----EEEecCC-------------CCc
Confidence 23567777776544 43310 1455567889999999994 5555332 235
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceec---C---C---CCccccceeecCCCCEEEEEecCCCCCCCCccccccce
Q 004141 282 LYAVRVSLYKSEASELELKESSSEDLPVVNL---T---E---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 352 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l---t---~---~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~ 352 (771)
|..++++. ..+..+.+ . . ........++||||++| |++++. ...|.
T Consensus 216 v~v~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l-yvsnr~---------~~sI~ 270 (345)
T PF10282_consen 216 VSVFDYDP---------------SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL-YVSNRG---------SNSIS 270 (345)
T ss_dssp EEEEEEET---------------TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE-EEEECT---------TTEEE
T ss_pred EEEEeecc---------------cCCceeEEEEeeeccccccccCCceeEEEecCCCEE-EEEecc---------CCEEE
Confidence 66666521 12222111 1 1 11145678999999976 566663 34566
Q ss_pred eeecC--CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 353 RIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 353 ~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
+++++ ++..+. +..+.. .+.+ +..+.++|||++|+++....+...+|.+|.++|.++.+.
T Consensus 271 vf~~d~~~g~l~~--------~~~~~~--~G~~-------Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 271 VFDLDPATGTLTL--------VQTVPT--GGKF-------PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEECTTTTTEEE--------EEEEEE--SSSS-------EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceEE--------EEEEeC--CCCC-------ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 77663 333221 111111 1222 356788999999988777778889999999999988765
No 135
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.23 E-value=4.7e-10 Score=110.87 Aligned_cols=276 Identities=12% Similarity=0.066 Sum_probs=162.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+||++|++||-.+.. ....+|.+..++..+-.-.+ .+.+..| ..+.||||.++|+--..+.. .
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD--~Taiiw~v~~d~~~kl~~tl-vgh~~~V------~yi~wSPDdryLlaCg~~e~--~ 293 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKD--STAIIWIVVYDVHFKLKKTL-VGHSQPV------SYIMWSPDDRYLLACGFDEV--L 293 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCC--ceEEEEEEecCcceeeeeee-ecccCce------EEEEECCCCCeEEecCchHh--e
Confidence 568899999999999976543 34456666655542211111 1111112 58999999999876443332 2
Q ss_pred CCccCCCCCCCCCCccC-CCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 179 PTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
..|+...+......... ........|.||.-..++|..+.+++.||+++.....-.+. ..-.+..++.++||++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv-r~~~v~dlait~Dgk~---- 368 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV-RDPKVHDLAITYDGKY---- 368 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc-ccceeEEEEEcCCCcE----
Confidence 23443333222222221 12223567899977777888889999999998754333211 1124678899999999
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
++.+. .+.+|..++. ++...+.+-.....+.+...|.||+.+...-.
T Consensus 369 vl~v~---------------~d~~i~l~~~-----------------e~~~dr~lise~~~its~~iS~d~k~~LvnL~- 415 (519)
T KOG0293|consen 369 VLLVT---------------VDKKIRLYNR-----------------EARVDRGLISEEQPITSFSISKDGKLALVNLQ- 415 (519)
T ss_pred EEEEe---------------cccceeeech-----------------hhhhhhccccccCceeEEEEcCCCcEEEEEcc-
Confidence 88776 2337888886 55555546556667889999999996544332
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
+..|++||++.....+.-.+... ..| +-.-||.--...++.+.+.++ .+|.
T Consensus 416 ----------~qei~LWDl~e~~lv~kY~Ghkq----------~~f-------iIrSCFgg~~~~fiaSGSED~--kvyI 466 (519)
T KOG0293|consen 416 ----------DQEIHLWDLEENKLVRKYFGHKQ----------GHF-------IIRSCFGGGNDKFIASGSEDS--KVYI 466 (519)
T ss_pred ----------cCeeEEeecchhhHHHHhhcccc----------cce-------EEEeccCCCCcceEEecCCCc--eEEE
Confidence 24589999884332211111100 001 113345433334656655554 4677
Q ss_pred EECCCCcEEEecCC-CCCceeeEEeecCCEEEEEEe
Q 004141 418 VNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 418 ~d~~tg~~~~l~~~-~~~~~~~~~s~dg~~l~~~~~ 452 (771)
++..+|++.....+ ...+...+++|....++++++
T Consensus 467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas 502 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS 502 (519)
T ss_pred EEccCCceeEeecCCcceeeEEecCCCCHHHhhccC
Confidence 78888887655443 334555566665555555443
No 136
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.22 E-value=1e-11 Score=125.67 Aligned_cols=204 Identities=18% Similarity=0.188 Sum_probs=119.2
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCC-CCCCCCCcchHHHHHHHHCC----cEEEEECCCCCCCCChhhhh------
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGG-PHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQ------ 586 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg-~~~~~~~~~~~~~~~la~~G----~~Vv~~d~rG~~~~g~~~~~------ 586 (771)
|.+...++|.|+++...+++|+|+++||. .+.. .......+..+.+.| ..+++++..+.......+..
T Consensus 5 g~~~~~~VylP~~y~~~~~~PvlylldG~~~~~~-~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~ 83 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFR-NGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSR 83 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTEEEEEEESHTTHHHH-HHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTC
T ss_pred CCeEEEEEEECCCCCCCCCCEEEEEccCCccccc-cchHHHHHHHHHHhCCCCceEEEEEeccccccccccccccccccc
Confidence 56688899999988788999999999994 1110 001112333344443 45566665443311111110
Q ss_pred cCCCCccccchhhHH--HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh-hhhcCCCCC
Q 004141 587 SLPGKVGSQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVGTTDIP 663 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~--~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~-~~~~~~~~~ 663 (771)
......+.....+.+ +.+.++.++..+.+++.+|+|+||||+.|+.++.++|+.|.++++.+|.++.. .+.+..+.
T Consensus 84 ~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~~~~- 162 (251)
T PF00756_consen 84 RADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSLWGPSDD- 162 (251)
T ss_dssp BCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCHHHHSTC-
T ss_pred ccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccccccccCcCCc-
Confidence 001111111222322 44566667766666669999999999999999999999999999999987653 11110000
Q ss_pred cchhhhhccCCCCccCCCCCChhhHHHHhhcCccc-----ccCCCCCcEEEEeeCCCCccC----------cHHHHHHHH
Q 004141 664 DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-----HISKVKTPTIFLLGAQDLRVP----------VSNGLQYAR 728 (771)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~~~i~~P~lii~G~~D~~vp----------~~~~~~~~~ 728 (771)
..+...++.. ....-..++++..|+.|.... .....++.+
T Consensus 163 -------------------------~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~ 217 (251)
T PF00756_consen 163 -------------------------EAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQ 217 (251)
T ss_dssp -------------------------GHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHH
Confidence 0011111111 112234678999999998432 123344555
Q ss_pred HHHhCCCCEEEEEeCCCCccC
Q 004141 729 ALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~ 749 (771)
.|+..|++..+..++ ++|..
T Consensus 218 ~l~~~g~~~~~~~~~-G~H~~ 237 (251)
T PF00756_consen 218 LLKAKGIPHTYHVFP-GGHDW 237 (251)
T ss_dssp HCCCEECTTESEEEH-SESSH
T ss_pred HHHHcCCCceEEEec-Cccch
Confidence 556667788888887 46743
No 137
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.22 E-value=2.1e-08 Score=105.81 Aligned_cols=257 Identities=14% Similarity=0.045 Sum_probs=133.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.....++||||+.|+...... +.-.+|.++.++....+-...... ....+.|+|||+.|+....
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~-~~i~~~~~~~~g~l~~~~~~~~~~--------~p~~i~~~~~g~~l~v~~~------- 99 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPE-FRVLSYRIADDGALTFAAESPLPG--------SPTHISTDHQGRFLFSASY------- 99 (330)
T ss_pred CCccEEECCCCCEEEEEECCC-CcEEEEEECCCCceEEeeeecCCC--------CceEEEECCCCCEEEEEEc-------
Confidence 456678999999886544322 333335554333332222111110 1147899999997766432
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-Ccee-eccCCCCCCccceEEEecCCCCCccE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-~~~~-~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
....|.+++++. +... .+...+.........++|||+.
T Consensus 100 ------------------------------------~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~---- 139 (330)
T PRK11028 100 ------------------------------------NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRT---- 139 (330)
T ss_pred ------------------------------------CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCE----
Confidence 125777888753 2221 1110222234556789999986
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-------ecCCCCccccceeecCCCCE
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-------NLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~lt~~~~~~~~p~~SpDG~~ 330 (771)
|+... . ....|+++|+. ..+... ++. ........+|+|||++
T Consensus 140 l~v~~-~-------------~~~~v~v~d~~----------------~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 140 LWVPC-L-------------KEDRIRLFTLS----------------DDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQY 188 (330)
T ss_pred EEEee-C-------------CCCEEEEEEEC----------------CCCcccccCCCceecC-CCCCCceEEECCCCCE
Confidence 55443 2 22378888872 222221 111 1223567899999997
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
|+... .. ...|.+++++.+... + ..+..+...+ ..+++- .....+.++|||++||.+....
T Consensus 189 lyv~~-~~---------~~~v~v~~~~~~~~~-~----~~~~~~~~~p--~~~~~~--~~~~~i~~~pdg~~lyv~~~~~ 249 (330)
T PRK11028 189 AYCVN-EL---------NSSVDVWQLKDPHGE-I----ECVQTLDMMP--ADFSDT--RWAADIHITPDGRHLYACDRTA 249 (330)
T ss_pred EEEEe-cC---------CCEEEEEEEeCCCCC-E----EEEEEEecCC--CcCCCC--ccceeEEECCCCCEEEEecCCC
Confidence 75543 32 256888887632110 1 0011111111 111110 0112466899999887764445
Q ss_pred CeeEEEEEECCCCcEEEecC--CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004141 411 SSQVIISVNVSSGELLRITP--AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~~--~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 465 (771)
+...+|.++.+++..+.+.. .........+++||++|+.+.... ..+.++++
T Consensus 250 ~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~---~~v~v~~~ 303 (330)
T PRK11028 250 SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS---HHISVYEI 303 (330)
T ss_pred CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC---CcEEEEEE
Confidence 56667777665554433221 111223467899999998865432 24555444
No 138
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.22 E-value=7.6e-10 Score=103.77 Aligned_cols=182 Identities=16% Similarity=0.165 Sum_probs=105.3
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCc--EEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004141 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~--~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|+++||...+..+.......+++++.+. .+..++++- ..++..+.+..+++.. .++.
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~~~ 60 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KPEN 60 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CCCC
Confidence 8999997665444444455667777664 455555543 1345555566666552 3445
Q ss_pred EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcc
Q 004141 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 697 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 697 (771)
+.|+|.|+||+.|.+++.+++ +++ |+++|.+....... ...+... ..+......-....+.....+
T Consensus 61 ~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~----------~~iG~~~-~~~~~e~~~~~~~~~~~l~~l 126 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQ----------DYIGEQT-NPYTGESYELTEEHIEELKAL 126 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHH----------HhhCccc-cCCCCccceechHhhhhcceE
Confidence 999999999999999998874 444 88899876543221 0111100 000000000000111111111
Q ss_pred ccc-CCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 698 SHI-SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 698 ~~~-~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
... ..-..++++++++.|++++...+...++. +..++.+|++|.+.. -.+.+..|++|+
T Consensus 127 ~~~~~~~~~~~lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 127 EVPYPTNPERYLVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred eccccCCCccEEEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 111 12246899999999999998665554432 344466788998874 346677888886
No 139
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.22 E-value=9.3e-09 Score=112.20 Aligned_cols=273 Identities=14% Similarity=0.059 Sum_probs=159.0
Q ss_pred eEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 102 SAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...++||||+++||....++ +...+++++ ..|+. +.+. .... +..+.|++||+.++|...+...+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~--l~d~i~~~~---------~~~~~W~~d~~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF--LPDGIENPK---------FSSVSWSDDGKGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE--EEEEEEEEE---------SEEEEECTTSSEEEEEECSTTTSS
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC--cCCcccccc---------cceEEEeCCCCEEEEEEeCccccc
Confidence 35789999999999876653 345566666 44432 2221 1111 124899999999999876553210
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee--ec-cCCCCCCccceEEEecCCCCCc
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AV-KGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~--~l-~~~~~~~~~~~~~wspDg~~~~ 255 (771)
. .......||.+.+.++... .+ .........-.+.+|+||+.
T Consensus 196 ~---------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~-- 240 (414)
T PF02897_consen 196 S---------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRY-- 240 (414)
T ss_dssp ----------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSE--
T ss_pred c---------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccE--
Confidence 0 0112468999999887543 33 11111221446789999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+..+..... .+.+|++++.... ......+.|........... ...|..+++.+
T Consensus 241 --l~i~~~~~~~-----------~s~v~~~d~~~~~------------~~~~~~~~l~~~~~~~~~~v-~~~~~~~yi~T 294 (414)
T PF02897_consen 241 --LFISSSSGTS-----------ESEVYLLDLDDGG------------SPDAKPKLLSPREDGVEYYV-DHHGDRLYILT 294 (414)
T ss_dssp --EEEEEESSSS-----------EEEEEEEECCCTT------------TSS-SEEEEEESSSS-EEEE-EEETTEEEEEE
T ss_pred --EEEEEEcccc-----------CCeEEEEeccccC------------CCcCCcEEEeCCCCceEEEE-EccCCEEEEee
Confidence 7766533221 2589999983100 00135566655433332222 12277788888
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
+.. ....+|+.+++....... ... ++....++ ..-..++..+++|++....++...|
T Consensus 295 n~~-------a~~~~l~~~~l~~~~~~~----~~~---~l~~~~~~---------~~l~~~~~~~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 295 NDD-------APNGRLVAVDLADPSPAE----WWT---VLIPEDED---------VSLEDVSLFKDYLVLSYRENGSSRL 351 (414)
T ss_dssp -TT--------TT-EEEEEETTSTSGGG----EEE---EEE--SSS---------EEEEEEEEETTEEEEEEEETTEEEE
T ss_pred CCC-------CCCcEEEEeccccccccc----cee---EEcCCCCc---------eeEEEEEEECCEEEEEEEECCccEE
Confidence 865 335689999987755310 000 01000000 0011245567789999889999999
Q ss_pred EEEECC-CCcEEEecCCCC-CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004141 416 ISVNVS-SGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 416 ~~~d~~-tg~~~~l~~~~~-~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~ 469 (771)
..+++. +.....+..... .+.......+++.+++..+++.+|+.+|.+++.+++
T Consensus 352 ~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 352 RVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 999998 666666654433 223333456889999999999999999999987764
No 140
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.21 E-value=6.8e-09 Score=109.60 Aligned_cols=256 Identities=9% Similarity=0.075 Sum_probs=135.3
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.++||+.|+... .. ...+..++++ +.+....+...+.+ +.....+++|||++|+..... ++.-.+|.
T Consensus 42 ~spd~~~lyv~~-~~-------~~~i~~~~~~-~~g~l~~~~~~~~~---~~p~~i~~~~~g~~l~v~~~~-~~~v~v~~ 108 (330)
T PRK11028 42 ISPDKRHLYVGV-RP-------EFRVLSYRIA-DDGALTFAAESPLP---GSPTHISTDHQGRFLFSASYN-ANCVSVSP 108 (330)
T ss_pred ECCCCCEEEEEE-CC-------CCcEEEEEEC-CCCceEEeeeecCC---CCceEEEECCCCCEEEEEEcC-CCeEEEEE
Confidence 467887765432 21 2355555564 22222212111111 235678999999988655432 23333444
Q ss_pred EecCCcceEEEec---CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 129 LWSQSQLEKEFHV---PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 129 ~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
+..++........ .... .+..++|||++|+....
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~----------~~~~~~p~g~~l~v~~~--------------------------------- 145 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGC----------HSANIDPDNRTLWVPCL--------------------------------- 145 (330)
T ss_pred ECCCCCCCCceeeccCCCcc----------cEeEeCCCCCEEEEeeC---------------------------------
Confidence 4323322222211 1222 36789999988765422
Q ss_pred CCcCcccCCccCceEEEEEccC-Cceeecc----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004141 206 EDWGETYAGKRQPSLFVININS-GEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~-~~~~~l~----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
....|++||+++ +.+.... ..+....+..++|+|||+. + |++++. ..
T Consensus 146 ----------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~----l-yv~~~~-------------~~ 197 (330)
T PRK11028 146 ----------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY----A-YCVNEL-------------NS 197 (330)
T ss_pred ----------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE----E-EEEecC-------------CC
Confidence 236899999876 3332110 0122335678899999995 4 444332 23
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCccee---cC---C---CCccccceeecCCCCEEEEEecCCCCCCCCccccccc
Q 004141 281 ALYAVRVSLYKSEASELELKESSSEDLPVVN---LT---E---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 351 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---lt---~---~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l 351 (771)
.|..++++. .+++.+. +. . .........++|||++|+. +++. ...|
T Consensus 198 ~v~v~~~~~---------------~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv-~~~~---------~~~I 252 (330)
T PRK11028 198 SVDVWQLKD---------------PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA-CDRT---------ASLI 252 (330)
T ss_pred EEEEEEEeC---------------CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE-ecCC---------CCeE
Confidence 677776621 1222211 11 1 0111224678999997654 5442 2457
Q ss_pred eeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 352 HRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 352 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
.+++++..+... .++..... +. ....+.++|||++|+.+....+...+|.++..+|.++.+.
T Consensus 253 ~v~~i~~~~~~~------~~~~~~~~---~~-------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 253 SVFSVSEDGSVL------SFEGHQPT---ET-------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred EEEEEeCCCCeE------EEeEEEec---cc-------cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 777765433211 01111111 00 2346789999999988766567788999988888876653
No 141
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.21 E-value=3.8e-10 Score=109.40 Aligned_cols=177 Identities=19% Similarity=0.177 Sum_probs=118.9
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHH
Q 004141 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 602 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~ 602 (771)
..++.|. ..+.+|+|||+||..-. ...|....+.+++.||+|+.+|+....+ .....+++++.+
T Consensus 6 l~v~~P~---~~g~yPVv~f~~G~~~~--~s~Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~~~~~ 69 (259)
T PF12740_consen 6 LLVYYPS---SAGTYPVVLFLHGFLLI--NSWYSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVASAAE 69 (259)
T ss_pred eEEEecC---CCCCcCEEEEeCCcCCC--HHHHHHHHHHHHhCceEEEEecccccCC-----------CCcchhHHHHHH
Confidence 3577887 56789999999996522 3347888999999999999999654221 122335788888
Q ss_pred HHHHHHHcC--------CCCCCeEEEEEcChhHHHHHHHHhhC-----CCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 603 AIDHVIDMG--------LANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 603 ~i~~l~~~~--------~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
.++|+.+.- ..|-+|++|+|||.||-++..++..+ +.++++++++.|+-.+.......
T Consensus 70 vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~~~--------- 140 (259)
T PF12740_consen 70 VIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQTE--------- 140 (259)
T ss_pred HHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccCCC---------
Confidence 899987631 15788999999999999999998876 45899999999985322110000
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCC---------ccCc-HHHHHHHHHHHhCCCCEEE
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL---------RVPV-SNGLQYARALREKGVETKV 739 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~---------~vp~-~~~~~~~~~l~~~g~~~~~ 739 (771)
|. .....|. .-+...|+|++-.+-.. ..|. ..-.+||++++ .+.-.
T Consensus 141 -------------P~------v~~~~p~--s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~---~p~~~ 196 (259)
T PF12740_consen 141 -------------PP------VLTYTPQ--SFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECK---PPSWH 196 (259)
T ss_pred -------------Cc------cccCccc--ccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcC---CCEEE
Confidence 00 0000111 11244899998766663 2222 23456777664 35677
Q ss_pred EEeCCCCcc
Q 004141 740 IVFPNDVHG 748 (771)
Q Consensus 740 ~~~~~~~H~ 748 (771)
++..+.||.
T Consensus 197 ~v~~~~GH~ 205 (259)
T PF12740_consen 197 FVAKDYGHM 205 (259)
T ss_pred EEeCCCCch
Confidence 788899996
No 142
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.2e-08 Score=100.57 Aligned_cols=228 Identities=13% Similarity=0.164 Sum_probs=135.4
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec---CCc-ccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV---PQT-VHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
...++++++|+.+ |+.+-..+.-.++.+.+.|.....++. ... .|..- .-.-.-...++|||++|+..
T Consensus 91 p~yvsvd~~g~~v-f~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ-~~~h~H~a~~tP~~~~l~v~------ 162 (346)
T COG2706 91 PCYVSVDEDGRFV-FVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ-ESPHVHSANFTPDGRYLVVP------ 162 (346)
T ss_pred CeEEEECCCCCEE-EEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc-cCCccceeeeCCCCCEEEEe------
Confidence 3678999999988 555554455556666555655544433 111 11000 00001266799999877664
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc--CCCCCCccceEEEecCCCCC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~--~~~~~~~~~~~~wspDg~~~ 254 (771)
|. +...|++++++.|...... ..+...+...++|+|+||
T Consensus 163 ------------------------------DL-------G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k-- 203 (346)
T COG2706 163 ------------------------------DL-------GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK-- 203 (346)
T ss_pred ------------------------------ec-------CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc--
Confidence 22 2367888888877765552 123345778999999999
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC---------CCccccceeec
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE---------SISSAFFPRFS 325 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~---------~~~~~~~p~~S 325 (771)
++|+-++- +..-.+|.++- ..++.++|.. +.........|
T Consensus 204 ---~aY~v~EL-----------~stV~v~~y~~-----------------~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 204 ---YAYLVNEL-----------NSTVDVLEYNP-----------------AVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred ---EEEEEecc-----------CCEEEEEEEcC-----------------CCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 56654322 22223444442 3455444321 22345678899
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004141 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~ 405 (771)
|||+.| |.+++. ++.-.+|.+|-.++... ++. .....+.+ +..+.++++|+.|++
T Consensus 253 ~dGrFL-YasNRg-------~dsI~~f~V~~~~g~L~--------~~~--~~~teg~~-------PR~F~i~~~g~~Lia 307 (346)
T COG2706 253 PDGRFL-YASNRG-------HDSIAVFSVDPDGGKLE--------LVG--ITPTEGQF-------PRDFNINPSGRFLIA 307 (346)
T ss_pred CCCCEE-EEecCC-------CCeEEEEEEcCCCCEEE--------EEE--EeccCCcC-------CccceeCCCCCEEEE
Confidence 999976 677774 22223444554444321 111 11122333 357789999998888
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecCC
Q 004141 406 SSIWGSSQVIISVNVSSGELLRITPA 431 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~~ 431 (771)
+....+...+|.+|..||+++.+...
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLTLLGRY 333 (346)
T ss_pred EccCCCcEEEEEEcCCCceEEecccc
Confidence 87777888999999999999988653
No 143
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.19 E-value=3.3e-10 Score=104.25 Aligned_cols=241 Identities=17% Similarity=0.138 Sum_probs=136.7
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.-.||..+.+..|... ++.+--+++-|+.+. ....|...+..++.+||.|+..||||.+++.........-.+.
T Consensus 11 ~~~DG~~l~~~~~pA~-----~~~~g~~~va~a~Gv-~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~ 84 (281)
T COG4757 11 PAPDGYSLPGQRFPAD-----GKASGRLVVAGATGV-GQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYL 84 (281)
T ss_pred ccCCCccCccccccCC-----CCCCCcEEecccCCc-chhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchh
Confidence 3457888888887533 222323334454433 2345777888999999999999999976554333222222222
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC-CCCC---cchhhh
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIP---DWCYVE 669 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~-~~~~---~~~~~~ 669 (771)
.-...|+-++++++.+.. ..-....+|||+||++...+ .+++..-.++|..++. .+....+. .... -|+...
T Consensus 85 DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~-~~~~k~~a~~vfG~ga-gwsg~m~~~~~l~~~~l~~lv~ 160 (281)
T COG4757 85 DWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLL-GQHPKYAAFAVFGSGA-GWSGWMGLRERLGAVLLWNLVG 160 (281)
T ss_pred hhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccc-ccCcccceeeEecccc-ccccchhhhhcccceeeccccc
Confidence 334678899999988742 34568999999999976644 4556322333333222 11111110 0000 011000
Q ss_pred h----ccCCCCccCCCCC----C--hhhHHHHh------hcCcc-----cccCCCCCcEEEEeeCCCCccCcHHHHHHHH
Q 004141 670 S----YGSKGKDSFTESP----S--VEDLTRFH------SKSPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728 (771)
Q Consensus 670 ~----~~~~~~~~~~~~~----~--~~~~~~~~------~~sp~-----~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~ 728 (771)
. +....-..+.+.. . ..++..+. ...|. +....+++|++.+...+|+.+|+.....|..
T Consensus 161 p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~ 240 (281)
T COG4757 161 PPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPASRDAFAS 240 (281)
T ss_pred cchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCHHHHHHHHH
Confidence 0 0000001111111 1 11222222 22222 2356788999999999999999999999988
Q ss_pred HHHhCCCCEEEEEeCCC----CccCCCCCChHHHHHHHHHHH
Q 004141 729 ALREKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~fl 766 (771)
..+++ +.+...++.+ ||+-..-+..+..+++++.||
T Consensus 241 ~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 241 FYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred hhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 87765 4666666655 786443333357788999887
No 144
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.18 E-value=5.1e-10 Score=134.64 Aligned_cols=234 Identities=15% Similarity=0.191 Sum_probs=132.0
Q ss_pred EEEEEEecCCCCC--CCCCcEEEEEcCCCCCCCCCcchH-----HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 521 FEAIFVSSSHKKD--CSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 521 l~~~~~~P~~~~~--~~~~p~vv~~HGg~~~~~~~~~~~-----~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
++-+.|.|..... ....|.||++||.+.... .|.. .+..|.++||.|+++|+.. +. ... ......
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~~--~~d~~~~~s~v~~L~~~g~~v~~~d~G~-~~--~~~---~~~~~~ 120 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSAD--MWDVTRDDGAVGILHRAGLDPWVIDFGS-PD--KVE---GGMERN 120 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCcc--ceecCCcccHHHHHHHCCCEEEEEcCCC-CC--hhH---cCccCC
Confidence 4556777753211 234578999999766543 3332 3788999999999999632 11 110 000011
Q ss_pred -ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-CCceeEEEecCCccchhhh---------------
Q 004141 594 -SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALM--------------- 656 (771)
Q Consensus 594 -~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~p~~~~~~~--------------- 656 (771)
...+..+.++++.+.+.. .+++.++||||||.+++.+++.+ +++++.+|+.+..+|+...
T Consensus 121 l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~ 197 (994)
T PRK07868 121 LADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAAD 197 (994)
T ss_pred HHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccc
Confidence 011223344444443332 35799999999999998888754 5589988876655443110
Q ss_pred ------hcCCCCCcchhhh-------------------hccC-CC-C-----ccCCC------CCC---hhhHHHHhhcC
Q 004141 657 ------VGTTDIPDWCYVE-------------------SYGS-KG-K-----DSFTE------SPS---VEDLTRFHSKS 695 (771)
Q Consensus 657 ------~~~~~~~~~~~~~-------------------~~~~-~~-~-----~~~~~------~~~---~~~~~~~~~~s 695 (771)
......+.|.... .+.. .. . ..+.. .+. .+....+...+
T Consensus 198 ~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n 277 (994)
T PRK07868 198 FMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHN 277 (994)
T ss_pred cchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhC
Confidence 0001111111000 0000 00 0 00000 000 00011111111
Q ss_pred cc-----------cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE-EEeCCCCccCC--CCCChHHHHHH
Q 004141 696 PI-----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV-IVFPNDVHGIE--RPQSDFESFLN 761 (771)
Q Consensus 696 p~-----------~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~-~~~~~~~H~~~--~~~~~~~~~~~ 761 (771)
.. ..+.++++|+|+++|++|.++|++.++.+.+.+.. .++ .+++++||... ......+.|..
T Consensus 278 ~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~ 353 (994)
T PRK07868 278 RMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPT 353 (994)
T ss_pred cccCceEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChH
Confidence 11 13678899999999999999999999988776643 444 57789999733 45566788999
Q ss_pred HHHHHHHh
Q 004141 762 IGLWFKKY 769 (771)
Q Consensus 762 i~~fl~~~ 769 (771)
+.+||.++
T Consensus 354 i~~wl~~~ 361 (994)
T PRK07868 354 VADWVKWL 361 (994)
T ss_pred HHHHHHHh
Confidence 99999875
No 145
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.16 E-value=1.3e-09 Score=111.08 Aligned_cols=204 Identities=19% Similarity=0.236 Sum_probs=119.8
Q ss_pred HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC-CCCeEEEEEcChhHHHHHHHHh
Q 004141 557 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA-NPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 557 ~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~-d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
..+..+.++||+|+++||.|- |..+. ........+-|.++|.+.+.....+ ...+|+++|+|.||+.+++++.
T Consensus 17 ~~l~~~L~~GyaVv~pDY~Gl---g~~y~---~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~ 90 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYEGL---GTPYL---NGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAE 90 (290)
T ss_pred HHHHHHHHCCCEEEecCCCCC---CCccc---CcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHH
Confidence 356677899999999999984 33321 1111122234444444444332112 3468999999999999988775
Q ss_pred hC----CCc---eeEEEecCCccchhhhhcCCCCCcc----------------------------------------hhh
Q 004141 636 QA----PDK---FVAAAARNPLCNLALMVGTTDIPDW----------------------------------------CYV 668 (771)
Q Consensus 636 ~~----p~~---~~~~v~~~p~~~~~~~~~~~~~~~~----------------------------------------~~~ 668 (771)
.. |++ +.++++.+|..++..+....+...+ |..
T Consensus 91 l~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~ 170 (290)
T PF03583_consen 91 LAPSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLA 170 (290)
T ss_pred HhHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHH
Confidence 42 554 7888888888887544332211100 000
Q ss_pred hhccCCCCccC--------CCCCC-hh--hH-HHHhhcCc-ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC-
Q 004141 669 ESYGSKGKDSF--------TESPS-VE--DL-TRFHSKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG- 734 (771)
Q Consensus 669 ~~~~~~~~~~~--------~~~~~-~~--~~-~~~~~~sp-~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g- 734 (771)
..........+ ..... .. .. ..+.+.+. ...-..-+.|++|.||..|.+||+.....+++.+.++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~ 250 (290)
T PF03583_consen 171 DIVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGG 250 (290)
T ss_pred HHHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCC
Confidence 00000000000 00000 00 00 11111111 00111235899999999999999999999999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
.+++++.++..+|..... ......+.||...+
T Consensus 251 a~V~~~~~~~~~H~~~~~----~~~~~a~~Wl~~rf 282 (290)
T PF03583_consen 251 ADVEYVRYPGGGHLGAAF----ASAPDALAWLDDRF 282 (290)
T ss_pred CCEEEEecCCCChhhhhh----cCcHHHHHHHHHHH
Confidence 799999999999965322 23467788888765
No 146
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.15 E-value=2.6e-10 Score=102.95 Aligned_cols=216 Identities=15% Similarity=0.133 Sum_probs=128.0
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEEC--CCCCCCCChh--hhhcC--
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVN--YRGSLGFGEE--ALQSL-- 588 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vv~~d--~rG~~~~g~~--~~~~~-- 588 (771)
+..+.--+|.|+....+++.|++.++-|-... ...|. ..-+.....|++|+.|| .||..--|.+ |--..
T Consensus 25 ~c~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT--~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GA 102 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDAPRGKRCPVLFYLSGLTCT--HENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGA 102 (283)
T ss_pred ccceEEEEecCCCcccCCcCceEEEecCCccc--chhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCc
Confidence 34466668889887777889999999995433 22222 22344568899999999 4554222221 10000
Q ss_pred --CCCccccchhhHHHHHHHHHH---------cCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh
Q 004141 589 --PGKVGSQDVNDVLTAIDHVID---------MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657 (771)
Q Consensus 589 --~~~~~~~~~~D~~~~i~~l~~---------~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~ 657 (771)
.-+.....+..--++.+|+.+ .-.+|+.+++|+||||||+-|+..+.+.|.+++.+.+.+|+++....
T Consensus 103 GFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~c- 181 (283)
T KOG3101|consen 103 GFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINC- 181 (283)
T ss_pred eeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccC-
Confidence 000000111221223333322 22378999999999999999999999999999999999999875432
Q ss_pred cCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHH--HHHHHHHHhC-C
Q 004141 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG--LQYARALREK-G 734 (771)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~--~~~~~~l~~~-g 734 (771)
.| +......|++. ....++.|...-.+........-+||-.|..|.+.+ +|. +.+.++.+.. .
T Consensus 182 ------pW------GqKAf~gYLG~-~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~-~qLlPe~l~~a~~~~~~ 247 (283)
T KOG3101|consen 182 ------PW------GQKAFTGYLGD-NKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA-EQLLPENLLEACKATWQ 247 (283)
T ss_pred ------cc------hHHHhhcccCC-ChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh-hhcChHHHHHHhhcccc
Confidence 12 22222223332 223333333222333444555669999999999886 221 2344444422 3
Q ss_pred CCEEEEEeCCCCccCC
Q 004141 735 VETKVIVFPNDVHGIE 750 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~ 750 (771)
.++.+...+|-.|.+.
T Consensus 248 ~~v~~r~~~gyDHSYy 263 (283)
T KOG3101|consen 248 APVVFRLQEGYDHSYY 263 (283)
T ss_pred ccEEEEeecCCCccee
Confidence 5788888999999765
No 147
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.14 E-value=3.5e-08 Score=104.30 Aligned_cols=284 Identities=16% Similarity=0.159 Sum_probs=150.8
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecC--CCCCCeEEEEecC-CcceEEEecCCccccc
Q 004141 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP--ENESPIQFELWSQ-SQLEKEFHVPQTVHGS 148 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~ 148 (771)
+-|+.+.++...+....+.... ........++||++++|..+.+. +.+.-..|.+... +....+-.....-.+.
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p 89 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA---EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP 89 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE---ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred CcEEEEEEcCCCCCceEeeeec---CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence 3555555544444333222110 11345567889999988666554 2234445565633 5555554443111100
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-
Q 004141 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS- 227 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~- 227 (771)
-.++.+|||++|+.+... ...+.+++++.
T Consensus 90 -------~~i~~~~~g~~l~vany~-------------------------------------------~g~v~v~~l~~~ 119 (345)
T PF10282_consen 90 -------CHIAVDPDGRFLYVANYG-------------------------------------------GGSVSVFPLDDD 119 (345)
T ss_dssp -------EEEEECTTSSEEEEEETT-------------------------------------------TTEEEEEEECTT
T ss_pred -------EEEEEecCCCEEEEEEcc-------------------------------------------CCeEEEEEccCC
Confidence 267899999977665321 24566666654
Q ss_pred Cceeecc--------C----CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 228 GEVQAVK--------G----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 228 ~~~~~l~--------~----~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
|.+.... + ........++.++|||+. + |+... ....|+.++++.
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~----v-~v~dl-------------G~D~v~~~~~~~------ 175 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF----V-YVPDL-------------GADRVYVYDIDD------ 175 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE----E-EEEET-------------TTTEEEEEEE-T------
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCE----E-EEEec-------------CCCEEEEEEEeC------
Confidence 4332220 0 011224457899999995 5 45432 222677777731
Q ss_pred hhhhhcCCCCCCccee---cC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC--CCCCCCCcccee
Q 004141 296 ELELKESSSEDLPVVN---LT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIV 369 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~---lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~ 369 (771)
.++++.. +. ......+..+|+|||++++.+ ++. .+.|.++++. ++..+.+
T Consensus 176 ---------~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~-~e~---------s~~v~v~~~~~~~g~~~~~----- 231 (345)
T PF10282_consen 176 ---------DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV-NEL---------SNTVSVFDYDPSDGSLTEI----- 231 (345)
T ss_dssp ---------TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE-ETT---------TTEEEEEEEETTTTEEEEE-----
T ss_pred ---------CCceEEEeeccccccCCCCcEEEEcCCcCEEEEe-cCC---------CCcEEEEeecccCCceeEE-----
Confidence 2222322 11 223347889999999976554 443 2457777766 3321111
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC---CCCceeeEEeecCCE
Q 004141 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA---ESNFSWSLLTLDGDN 446 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~---~~~~~~~~~s~dg~~ 446 (771)
..+..... .+.+. .....+..||||++||++....+...+|.+|..+|+++.+..- ........++++|++
T Consensus 232 ~~~~~~~~----~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~ 305 (345)
T PF10282_consen 232 QTISTLPE----GFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRY 305 (345)
T ss_dssp EEEESCET----TSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSE
T ss_pred EEeeeccc----ccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCE
Confidence 11111111 11110 0134567899999998877777777888888788888876432 122455678999999
Q ss_pred EEEEEeCCCCCCeEEEEEe
Q 004141 447 IIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 447 l~~~~~~~~~p~~l~~~~~ 465 (771)
|+.+....+. +.+++.
T Consensus 306 l~Va~~~s~~---v~vf~~ 321 (345)
T PF10282_consen 306 LYVANQDSNT---VSVFDI 321 (345)
T ss_dssp EEEEETTTTE---EEEEEE
T ss_pred EEEEecCCCe---EEEEEE
Confidence 9887655443 555444
No 148
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.14 E-value=3.3e-10 Score=111.91 Aligned_cols=223 Identities=15% Similarity=0.187 Sum_probs=85.4
Q ss_pred CCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCC-CCCChhhhhcCCCCccccchhhHHHHHHHHHHcC--
Q 004141 536 CDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-- 611 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vv~~d~rG~-~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-- 611 (771)
...+|||+-|-...... +....++..|...||.|+.+.++.+ .|+|... -..+++|+.++|+||+...
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~S--------L~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSS--------LDRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S----------HHHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcch--------hhhHHHHHHHHHHHHHHhhcc
Confidence 45689999773332222 3444566777778999999998853 3454332 2357899999999999873
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHhhCC-----CceeEEEecCCccchhhhhcCCCC-Ccch----hhhhc-----cCCC-
Q 004141 612 LANPSKVTVVGGSHGGFLTTHLIGQAP-----DKFVAAAARNPLCNLALMVGTTDI-PDWC----YVESY-----GSKG- 675 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~p-----~~~~~~v~~~p~~~~~~~~~~~~~-~~~~----~~~~~-----~~~~- 675 (771)
....++|+|+|||-|.+-+++++.... ..+.++|+.+|+.|...+...... .... ....+ +...
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 135789999999999999999987642 579999999999886433221110 0000 00000 0000
Q ss_pred ----CccCC-CCCChhhHHHHhhcCc----------------ccccCCCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhC
Q 004141 676 ----KDSFT-ESPSVEDLTRFHSKSP----------------ISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREK 733 (771)
Q Consensus 676 ----~~~~~-~~~~~~~~~~~~~~sp----------------~~~~~~i~~P~lii~G~~D~~vp~~~-~~~~~~~l~~~ 733 (771)
..... ..|. .....+.-.+| .....+++.|+|++.+++|+.||... -+.+.++++.+
T Consensus 184 p~~~~~~~~~~~Pi-TA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a 262 (303)
T PF08538_consen 184 PREFTPLVFYDTPI-TAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAA 262 (303)
T ss_dssp ----GGTTT-SS----HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT------------------
T ss_pred eccccccccCCCcc-cHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceecccccccccccccccc
Confidence 00000 1111 11111111111 12456778899999999999998643 34566666554
Q ss_pred CC----CEEEEEeCCCCccCCCCCCh---HHHHHHHHHHHH
Q 004141 734 GV----ETKVIVFPNDVHGIERPQSD---FESFLNIGLWFK 767 (771)
Q Consensus 734 g~----~~~~~~~~~~~H~~~~~~~~---~~~~~~i~~fl~ 767 (771)
-. ....-++||+.|.+..+... ....+++..||+
T Consensus 263 ~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 263 TNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp -----------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccCC
Confidence 22 12345899999998865433 355667777764
No 149
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.13 E-value=2.4e-09 Score=106.50 Aligned_cols=267 Identities=11% Similarity=0.054 Sum_probs=164.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCC--CCeEEEEecCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSP 176 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~ 176 (771)
.+....||+|++.||..+-.+ ...+|.+. +.+....+.. ...+ +++.|+|. +..||..+.++..
T Consensus 177 Pis~~~fS~ds~~laT~swsG--~~kvW~~~-~~~~~~~l~gH~~~v----------~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSG--LVKVWSVP-QCNLLQTLRGHTSRV----------GAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred cceeeEeecCCCeEEEeecCC--ceeEeecC-CcceeEEEeccccce----------eeEEEccCCCccceeeeccCCce
Confidence 467788999999998766543 33333333 2333333332 2222 68999997 6788888887765
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+ .|.............+..-...+.|-|++.-+.+..-+..=.+||+.++....+. -....++...+|.|||.
T Consensus 244 k--lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DGS---- 316 (459)
T KOG0272|consen 244 K--LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDGS---- 316 (459)
T ss_pred e--eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCCc----
Confidence 5 3332222222222334444456678888666656666677788999998765552 22344788999999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEe
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+.++- .+.-..|| |+ -+| ..-.|..+...+.++.|||+|-.||..+
T Consensus 317 -L~~tGG------------lD~~~RvW--Dl-----------------Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 317 -LAATGG------------LDSLGRVW--DL-----------------RTGRCIMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred -eeeccC------------ccchhhee--ec-----------------ccCcEEEEecccccceeeEeECCCceEEeecC
Confidence 554431 01112344 44 334 3455667777899999999999999877
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
.++ ...+||+.......+.... ..-+..++|+|++...+++++.++..+|
T Consensus 365 ~Dn-----------t~kVWDLR~r~~ly~ipAH-------------------~nlVS~Vk~~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 365 SDN-----------TCKVWDLRMRSELYTIPAH-------------------SNLVSQVKYSPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred CCC-----------cEEEeeecccccceecccc-------------------cchhhheEecccCCeEEEEcccCcceee
Confidence 664 4667777654432221111 1235678899977778888888999999
Q ss_pred EEEECCCCc-EEEecCCCCCceeeEEeecCCEEEEE
Q 004141 416 ISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 416 ~~~d~~tg~-~~~l~~~~~~~~~~~~s~dg~~l~~~ 450 (771)
|. ..+.. ++.|....+-+.....++|+..++..
T Consensus 415 Ws--~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 415 WS--TRTWSPLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred ec--CCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence 95 22433 33444444444455677788766543
No 150
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.13 E-value=2.3e-08 Score=102.30 Aligned_cols=235 Identities=15% Similarity=0.108 Sum_probs=129.3
Q ss_pred cccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC--------cceEE
Q 004141 67 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS--------QLEKE 138 (771)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~--------~~~~~ 138 (771)
.+...+.++.|+..... .+....|+.-.+.+...+|++||++|+.+.+.. ++-....+|+.| +.+++
T Consensus 76 SGD~sG~vRIWdtt~~~----hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr-erfg~~F~~DSG~SvGei~GhSr~i 150 (603)
T KOG0318|consen 76 SGDVSGKVRIWDTTQKE----HILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR-ERFGHVFLWDSGNSVGEITGHSRRI 150 (603)
T ss_pred ecCCcCcEEEEeccCcc----eeeeeeeeecccccccceeCCCCcEEEEEecCc-cceeEEEEecCCCccceeeccceeE
Confidence 33445566666542221 111223333336688999999999999887765 333344455433 22333
Q ss_pred EecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCc
Q 004141 139 FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 218 (771)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~ 218 (771)
-.+.... -.+|+-..=|.|+. ++|--..+ .+-......+..+...+.|+||+..-.+...+.
T Consensus 151 ns~~~Kp------sRPfRi~T~sdDn~-v~ffeGPP-----------FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg 212 (603)
T KOG0318|consen 151 NSVDFKP------SRPFRIATGSDDNT-VAFFEGPP-----------FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG 212 (603)
T ss_pred eeeeccC------CCceEEEeccCCCe-EEEeeCCC-----------eeeeecccccccceeeEEECCCCCeEEEecCCc
Confidence 3332221 12345555666664 44421111 111122334556677888999943333445578
Q ss_pred eEEEEEccCCceeec-c-CCCCCCccceEEEecCCCCCccEEEEEeecCc-------ce---------------eeeeee
Q 004141 219 SLFVININSGEVQAV-K-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE-------TR---------------KLGIKY 274 (771)
Q Consensus 219 ~l~v~d~~~~~~~~l-~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~-------~~---------------~~g~~~ 274 (771)
.++++|-.+|+..-. . ..+...++..++||||+++ ++.++-... .+ .+|..+
T Consensus 213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~----~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW 288 (603)
T KOG0318|consen 213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ----FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW 288 (603)
T ss_pred cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCce----EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence 999999888865443 2 1234557889999999999 988763222 11 122221
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 275 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
...+|..+.+++. ++.-.. .+......+..+...+.....||||++|+-.+.+.
T Consensus 289 ---qkd~lItVSl~G~------in~ln~-~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 289 ---QKDHLITVSLSGT------INYLNP-SDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred ---eCCeEEEEEcCcE------EEEecc-cCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 2335555554210 000000 01123455566777899999999999998777664
No 151
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.13 E-value=3.9e-08 Score=100.64 Aligned_cols=253 Identities=18% Similarity=0.220 Sum_probs=131.0
Q ss_pred HHHHhhcCccccceEE-EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC
Q 004141 30 LLQDFTNISSIDKAWT-FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP 108 (771)
Q Consensus 30 ~~~~~~~~~~~~~~~~-~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP 108 (771)
+-+-+..+|+...+.- .=.-.|-|..|.|.. .+.++...++... ...++|... ..+.-..+||
T Consensus 6 lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~n----------Gksv~ir~i~~~~-~~~iYtEH~-----~~vtVAkySP 69 (603)
T KOG0318|consen 6 LKETFASLPSTERGVPIIIGGDPKGDNILYTN----------GKSVIIRNIDNPA-SVDIYTEHA-----HQVTVAKYSP 69 (603)
T ss_pred hhhhccCCCcccCCcceEeccCCCCCeEEEeC----------CCEEEEEECCCcc-ceeeecccc-----ceeEEEEeCC
Confidence 3445566676665421 112356788999963 2355665553332 233444333 4466788999
Q ss_pred CCCeEEEEecCCCCCCeEEEEecCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCCCC--CCccCCC
Q 004141 109 SGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK--PTFSLGS 185 (771)
Q Consensus 109 dG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~--~~~~~~~ 185 (771)
.|-++|-- +...-.++|+..+...++... .-..|.| ..++|++|+++|+-+.+.+..-. ..|+..
T Consensus 70 sG~yiASG-----D~sG~vRIWdtt~~~hiLKnef~v~aG~I------~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG- 137 (603)
T KOG0318|consen 70 SGFYIASG-----DVSGKVRIWDTTQKEHILKNEFQVLAGPI------KDISWDFDSKRIAAVGEGRERFGHVFLWDSG- 137 (603)
T ss_pred CceEEeec-----CCcCcEEEEeccCcceeeeeeeeeccccc------ccceeCCCCcEEEEEecCccceeEEEEecCC-
Confidence 99988742 222356777433323332211 1222333 79999999999999987654311 111110
Q ss_pred CCCCCCCccCCCCCCcccccCCcC-cccCCccCceEEEEEccCCceeeccCC--CCCCccceEEEecCCCCCccEEEEEe
Q 004141 186 TKGGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKGI--PKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~~~~~~l~~~--~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
...-....+..-.....+.+..- ...++..++.+-.+. |.+-+..-+ ....-+..+.|||||+. ++.++
T Consensus 138 -~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe---GPPFKFk~s~r~HskFV~~VRysPDG~~----Fat~g 209 (603)
T KOG0318|consen 138 -NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE---GPPFKFKSSFREHSKFVNCVRYSPDGSR----FATAG 209 (603)
T ss_pred -CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee---CCCeeeeecccccccceeeEEECCCCCe----EEEec
Confidence 00000000111111111111100 000011111222211 111111000 11224668899999998 77665
Q ss_pred ecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecC---CCCccccceeecCCCCEEEEEecCC
Q 004141 263 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT---ESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 263 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt---~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+..++++|= .+|+. -.|. .+.+.+...+||||+++++..+.+.
T Consensus 210 ---------------sDgki~iyDG-----------------ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 210 ---------------SDGKIYIYDG-----------------KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred ---------------CCccEEEEcC-----------------CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 3347888884 55543 3344 4567899999999999999888764
Q ss_pred CCCCCCccccccceeeecCCCCC
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.+.+||+.++..
T Consensus 258 -----------t~KIWdVs~~sl 269 (603)
T KOG0318|consen 258 -----------TIKIWDVSTNSL 269 (603)
T ss_pred -----------eEEEEEeeccce
Confidence 367778777643
No 152
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.12 E-value=9.9e-09 Score=105.16 Aligned_cols=268 Identities=16% Similarity=0.185 Sum_probs=151.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+....|+|+|+.|++.... +.-.+|.+ ..+............ ...+.|+|+++.|+..+.+....
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~--g~i~i~~~-~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~~~~i~- 76 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGD--GTIKVWDL-ETGELLRTLKGHTGP---------VRDVAASADGTYLASGSSDKTIR- 76 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecC--cEEEEEEe-eCCCcEEEEecCCcc---------eeEEEECCCCCEEEEEcCCCeEE-
Confidence 457889999999999887643 22222322 222222222221111 14889999999888877644321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCcc-CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR-QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~-~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.|.............+........|.++ +..++... ...|.+||+.+++..... ......+..+.|+|+++.
T Consensus 77 -i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~---- 149 (289)
T cd00200 77 -LWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTF---- 149 (289)
T ss_pred -EEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCE----
Confidence 2222211111111112222334456666 34444434 789999999866654441 223446788999999764
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ ....|+++|+ ..++ ...+..+...+....|+|+|+.|++.+.
T Consensus 150 l~~~~---------------~~~~i~i~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 150 VASSS---------------QDGTIKLWDL-----------------RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEEEc---------------CCCcEEEEEc-----------------cccccceeEecCccccceEEECCCcCEEEEecC
Confidence 44432 2236888887 4333 3444445556888999999998888775
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+ ..|.++|+.++......... ...+..+.|++++. +++....++ .|+
T Consensus 198 ~-----------~~i~i~d~~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~-~~~~~~~~~--~i~ 244 (289)
T cd00200 198 D-----------GTIKLWDLSTGKCLGTLRGH-------------------ENGVNSVAFSPDGY-LLASGSEDG--TIR 244 (289)
T ss_pred C-----------CcEEEEECCCCceecchhhc-------------------CCceEEEEEcCCCc-EEEEEcCCC--cEE
Confidence 3 35888888765432221110 01245678999965 445544344 455
Q ss_pred EEECCCCcEEEe-cCCCCCceeeEEeecCCEEEEEE
Q 004141 417 SVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 417 ~~d~~tg~~~~l-~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
.+++.+++.... ......+....++++++.++...
T Consensus 245 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 245 VWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred EEEcCCceeEEEccccCCcEEEEEECCCCCEEEEec
Confidence 556666554443 32333445567777777665544
No 153
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.12 E-value=7.2e-09 Score=97.79 Aligned_cols=230 Identities=15% Similarity=0.144 Sum_probs=134.9
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccc
Q 004141 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHG 147 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 147 (771)
..++.+++||+.++ ...+||.... ..+...++|||.++|+--+.+. .+.+| .-+... .+-......
T Consensus 82 swD~~lrlWDl~~g-~~t~~f~GH~-----~dVlsva~s~dn~qivSGSrDk-----Tiklwnt~g~ck-~t~~~~~~~- 148 (315)
T KOG0279|consen 82 SWDGTLRLWDLATG-ESTRRFVGHT-----KDVLSVAFSTDNRQIVSGSRDK-----TIKLWNTLGVCK-YTIHEDSHR- 148 (315)
T ss_pred cccceEEEEEecCC-cEEEEEEecC-----CceEEEEecCCCceeecCCCcc-----eeeeeeecccEE-EEEecCCCc-
Confidence 34567888888544 3344554443 6789999999999997654433 56677 323222 222111112
Q ss_pred cccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC
Q 004141 148 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 227 (771)
Q Consensus 148 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~ 227 (771)
+|..++.|||...-..+++.. -+..+-+||+.+
T Consensus 149 -----~WVscvrfsP~~~~p~Ivs~s------------------------------------------~DktvKvWnl~~ 181 (315)
T KOG0279|consen 149 -----EWVSCVRFSPNESNPIIVSAS------------------------------------------WDKTVKVWNLRN 181 (315)
T ss_pred -----CcEEEEEEcCCCCCcEEEEcc------------------------------------------CCceEEEEccCC
Confidence 345899999996333332211 125788999998
Q ss_pred CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC
Q 004141 228 GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 307 (771)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 307 (771)
-+.+.-- ......+...+.||||.. +++.+ ..+.++++|+ +.+
T Consensus 182 ~~l~~~~-~gh~~~v~t~~vSpDGsl----casGg---------------kdg~~~LwdL-----------------~~~ 224 (315)
T KOG0279|consen 182 CQLRTTF-IGHSGYVNTVTVSPDGSL----CASGG---------------KDGEAMLWDL-----------------NEG 224 (315)
T ss_pred cchhhcc-ccccccEEEEEECCCCCE----EecCC---------------CCceEEEEEc-----------------cCC
Confidence 8776651 233457788999999996 66643 4558999998 444
Q ss_pred cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc
Q 004141 308 PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 387 (771)
Q Consensus 308 ~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~ 387 (771)
+.-.-.+....+.+.+|||.-=+|+-... ..|.+||+.++....-. ..+.+-+ .... .+.+
T Consensus 225 k~lysl~a~~~v~sl~fspnrywL~~at~------------~sIkIwdl~~~~~v~~l-~~d~~g~----s~~~--~~~~ 285 (315)
T KOG0279|consen 225 KNLYSLEAFDIVNSLCFSPNRYWLCAATA------------TSIKIWDLESKAVVEEL-KLDGIGP----SSKA--GDPI 285 (315)
T ss_pred ceeEeccCCCeEeeEEecCCceeEeeccC------------CceEEEeccchhhhhhc-ccccccc----cccc--CCcE
Confidence 43222344556899999998655543332 23888998876542110 0000000 0000 0011
Q ss_pred cCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 388 SSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 388 ~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
| -+++||+||.+||.. ..++..++|.+
T Consensus 286 c---lslaws~dG~tLf~g-~td~~irv~qv 312 (315)
T KOG0279|consen 286 C---LSLAWSADGQTLFAG-YTDNVIRVWQV 312 (315)
T ss_pred E---EEEEEcCCCcEEEee-ecCCcEEEEEe
Confidence 1 267899999988643 34555666654
No 154
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.12 E-value=3e-08 Score=93.73 Aligned_cols=249 Identities=14% Similarity=0.108 Sum_probs=144.8
Q ss_pred eeEEEEEEeecCCCC----ccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEE-ecCC
Q 004141 71 KKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEF-HVPQ 143 (771)
Q Consensus 71 ~~~~~~~~~~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~ 143 (771)
++.+.+|.+..+..+ .++++... ..+...+.|+||.+.+-.+-.. ...+| .+++.++.+ -...
T Consensus 37 Dk~ii~W~L~~dd~~~G~~~r~~~GHs-----H~v~dv~~s~dg~~alS~swD~-----~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 37 DKTIIVWKLTSDDIKYGVPVRRLTGHS-----HFVSDVVLSSDGNFALSASWDG-----TLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred ceEEEEEEeccCccccCceeeeeeccc-----eEecceEEccCCceEEeccccc-----eEEEEEecCCcEEEEEEecCC
Confidence 345666666554332 23443322 4577889999999876544333 66777 344444443 3345
Q ss_pred cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEE
Q 004141 144 TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVI 223 (771)
Q Consensus 144 ~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~ 223 (771)
++ .+++||||.++|+..+. +..|-+|
T Consensus 107 dV----------lsva~s~dn~qivSGSr--------------------------------------------DkTiklw 132 (315)
T KOG0279|consen 107 DV----------LSVAFSTDNRQIVSGSR--------------------------------------------DKTIKLW 132 (315)
T ss_pred ce----------EEEEecCCCceeecCCC--------------------------------------------cceeeee
Confidence 55 59999999999987543 3578889
Q ss_pred EccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCC
Q 004141 224 NINSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 303 (771)
Q Consensus 224 d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 303 (771)
+.-++....+....+..-+..+.|||.... .++++-. -+..+-++|+
T Consensus 133 nt~g~ck~t~~~~~~~~WVscvrfsP~~~~----p~Ivs~s-------------~DktvKvWnl---------------- 179 (315)
T KOG0279|consen 133 NTLGVCKYTIHEDSHREWVSCVRFSPNESN----PIIVSAS-------------WDKTVKVWNL---------------- 179 (315)
T ss_pred eecccEEEEEecCCCcCcEEEEEEcCCCCC----cEEEEcc-------------CCceEEEEcc----------------
Confidence 988776655521111335778999998644 3333311 1225777777
Q ss_pred CCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCC
Q 004141 304 SEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDC 382 (771)
Q Consensus 304 ~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (771)
.+-+. .....+.+.+....+||||..+++... ..++++||++.++...-....
T Consensus 180 -~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk-----------dg~~~LwdL~~~k~lysl~a~-------------- 233 (315)
T KOG0279|consen 180 -RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK-----------DGEAMLWDLNEGKNLYSLEAF-------------- 233 (315)
T ss_pred -CCcchhhccccccccEEEEEECCCCCEEecCCC-----------CceEEEEEccCCceeEeccCC--------------
Confidence 44443 334456677889999999998876222 346899999876652211111
Q ss_pred CcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCCCC-------c--eeeEEeecCCEEEEEEe
Q 004141 383 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAESN-------F--SWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 383 f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~~~-------~--~~~~~s~dg~~l~~~~~ 452 (771)
..+.+++|+|+--.| .... +....|| |++++... .|...... . -...||.||..|+.-.+
T Consensus 234 ------~~v~sl~fspnrywL-~~at-~~sIkIw--dl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 234 ------DIVNSLCFSPNRYWL-CAAT-ATSIKIW--DLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred ------CeEeeEEecCCceeE-eecc-CCceEEE--eccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence 124678999985433 3222 3334444 66665433 22221110 0 12356677777766553
No 155
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=1.3e-07 Score=93.40 Aligned_cols=289 Identities=15% Similarity=0.090 Sum_probs=158.2
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCcceEEEecCCcccccc
Q 004141 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSV 149 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 149 (771)
+.|+++.+++..++...+ ..-.+.+..+..+|+|+++.|..+-..+ .+.-.-|.++ ++|....+-......+.
T Consensus 16 ~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~-- 90 (346)
T COG2706 16 QGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP-- 90 (346)
T ss_pred CceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC--
Confidence 456666676444432211 1111235677889999999986655442 2444566776 44665554433221110
Q ss_pred cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-C
Q 004141 150 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-G 228 (771)
Q Consensus 150 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-~ 228 (771)
--.++.++||+.|+.+.... ..|-++.+.. |
T Consensus 91 -----p~yvsvd~~g~~vf~AnY~~-------------------------------------------g~v~v~p~~~dG 122 (346)
T COG2706 91 -----PCYVSVDEDGRFVFVANYHS-------------------------------------------GSVSVYPLQADG 122 (346)
T ss_pred -----CeEEEECCCCCEEEEEEccC-------------------------------------------ceEEEEEcccCC
Confidence 03678999998765543221 2333333321 2
Q ss_pred ceeecc-------CCCC----CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 229 EVQAVK-------GIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 229 ~~~~l~-------~~~~----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
.+..+. ..+. ..-.-...++|||+. |+... + ..-+|+++++
T Consensus 123 ~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~----l~v~D-------L-------G~Dri~~y~~---------- 174 (346)
T COG2706 123 SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY----LVVPD-------L-------GTDRIFLYDL---------- 174 (346)
T ss_pred ccccceeeeecCCCCCCccccCCccceeeeCCCCCE----EEEee-------c-------CCceEEEEEc----------
Confidence 221110 0011 111345679999996 65543 1 1226888888
Q ss_pred hhhcCCCCCCcceecC----CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe
Q 004141 298 ELKESSSEDLPVVNLT----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt----~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 373 (771)
+.|.....+ ......+...|.|+|| ++|+-++- ++.-.+|.++-..++..++ -.
T Consensus 175 -------~dg~L~~~~~~~v~~G~GPRHi~FHpn~k-~aY~v~EL-------~stV~v~~y~~~~g~~~~l-------Q~ 232 (346)
T COG2706 175 -------DDGKLTPADPAEVKPGAGPRHIVFHPNGK-YAYLVNEL-------NSTVDVLEYNPAVGKFEEL-------QT 232 (346)
T ss_pred -------ccCccccccccccCCCCCcceEEEcCCCc-EEEEEecc-------CCEEEEEEEcCCCceEEEe-------ee
Confidence 333332222 3344578899999999 45666554 2233344444333333221 11
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC--CC-CceeeEEeecCCEEEEE
Q 004141 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ES-NFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~-~~~~~~~s~dg~~l~~~ 450 (771)
+... .++|.|-. +...+..++||+.||.+....+...+|.||..+|++..+... .+ ......++++|+.|+++
T Consensus 233 i~tl--P~dF~g~~--~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 233 IDTL--PEDFTGTN--WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred eccC--ccccCCCC--ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 1111 23455421 234566899999888776666777899999999987766432 22 13345688899998888
Q ss_pred EeCCCCCCeEEEEEeccc
Q 004141 451 SSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 451 ~~~~~~p~~l~~~~~~~~ 468 (771)
....+. -.+|.++-.++
T Consensus 309 ~q~sd~-i~vf~~d~~TG 325 (346)
T COG2706 309 NQKSDN-ITVFERDKETG 325 (346)
T ss_pred ccCCCc-EEEEEEcCCCc
Confidence 876666 44555554333
No 156
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.10 E-value=5.6e-11 Score=118.44 Aligned_cols=174 Identities=17% Similarity=0.255 Sum_probs=106.0
Q ss_pred cEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEe
Q 004141 567 YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 646 (771)
Q Consensus 567 ~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 646 (771)
|.|+++|.||.+..... ..........+|+.+.++.+++.. ..+++.++||||||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREAL--GIKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHH--TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHh--CCCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 78999999995443210 001233345788999999988874 345599999999999999999999999999999
Q ss_pred cCCcc--ch-h------h--hhcC--CCCCc------------ch----hhhhc-cCCCC-----ccCCCC--CCh----
Q 004141 647 RNPLC--NL-A------L--MVGT--TDIPD------------WC----YVESY-GSKGK-----DSFTES--PSV---- 685 (771)
Q Consensus 647 ~~p~~--~~-~------~--~~~~--~~~~~------------~~----~~~~~-~~~~~-----~~~~~~--~~~---- 685 (771)
.++.. .. . . +... ..... +. ..... ..... ..+... ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 99851 00 0 0 0000 00000 00 00000 00000 000000 000
Q ss_pred --hhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 686 --EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 686 --~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
.....+....+...+..+++|+|+++|++|..+|++....+.+.+.. .++++++++||...
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~----~~~~~~~~~GH~~~ 217 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIPN----SQLVLIEGSGHFAF 217 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHSTT----EEEEEETTCCSTHH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcCC----CEEEECCCCChHHH
Confidence 00011122233345678999999999999999999888886665544 89999999999754
No 157
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.09 E-value=2.7e-09 Score=101.25 Aligned_cols=105 Identities=23% Similarity=0.369 Sum_probs=73.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
++..++-.|. ....|+++++|||+.++ ..|...+..+. ..-..|+++|+|| ||.+-......--......
T Consensus 61 t~n~Y~t~~~----~t~gpil~l~HG~G~S~--LSfA~~a~el~s~~~~r~~a~DlRg---HGeTk~~~e~dlS~eT~~K 131 (343)
T KOG2564|consen 61 TFNVYLTLPS----ATEGPILLLLHGGGSSA--LSFAIFASELKSKIRCRCLALDLRG---HGETKVENEDDLSLETMSK 131 (343)
T ss_pred eEEEEEecCC----CCCccEEEEeecCcccc--hhHHHHHHHHHhhcceeEEEeeccc---cCccccCChhhcCHHHHHH
Confidence 5666666663 55679999999988774 36777777664 4567889999999 5554322211111223367
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhh
Q 004141 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
|+.+.++++... .+..|.|+||||||.++.+.+..
T Consensus 132 D~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 132 DFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred HHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhh
Confidence 888888777644 35679999999999999888764
No 158
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.05 E-value=8.1e-09 Score=114.66 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=72.5
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCC-----
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE----- 120 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~----- 120 (771)
.|.+|+||++++|+....+ ..+.+...||+.+. ++..+++|... ....|+|||||++|+|+++..
T Consensus 354 spaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~---gg~~~~lt~g~------~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL---GGVAVQVLEGH------SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cceECCCCCEEEEEEeecC-CCCCcceEEEEEeC---CCcceeeecCC------CCCCceECCCCCceEEEecCcceEEE
Confidence 5556889999999987666 33346789999764 33446776553 378899999999999987541
Q ss_pred ---CCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004141 121 ---NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 121 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
.+..+++.++ +++...+ .+...+ ..+.|||||++|||+.
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~I----------ssl~wSpDG~RiA~i~ 466 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPI----------SELQLSRDGVRAAMII 466 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCc----------CeEEECCCCCEEEEEE
Confidence 1344566665 4444333 222223 7999999999999985
No 159
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.05 E-value=9.7e-09 Score=103.59 Aligned_cols=269 Identities=14% Similarity=0.171 Sum_probs=161.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+....|+-||..||+.+..+ ..++| ..|.......... |. +-.+.|+-+|.+|+-..-+++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G-----~~riw~~~G~l~~tl~~Hk---gP------I~slKWnk~G~yilS~~vD~tt- 300 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDG-----EARIWNKDGNLISTLGQHK---GP------IFSLKWNKKGTYILSGGVDGTT- 300 (524)
T ss_pred CCcceEEecCCCCeEEEeecCc-----EEEEEecCchhhhhhhccC---Cc------eEEEEEcCCCCEEEeccCCccE-
Confidence 4588899999999999987765 67788 5565444333222 12 2589999999999887655432
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
-.|+............+.....++.|..+ .+-........|+|+-+....+..-. +.....+..+.|.|.|+-
T Consensus 301 -ilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~-~GH~g~V~alk~n~tg~L---- 373 (524)
T KOG0273|consen 301 -ILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTF-IGHHGEVNALKWNPTGSL---- 373 (524)
T ss_pred -EEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceee-ecccCceEEEEECCCCce----
Confidence 12332111111111111111122333322 12222223456888777665554331 335567888999999996
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCE-------
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF------- 330 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~------- 330 (771)
|+-.+.+ ..-.||... ++.....|..+...+....|||+|.-
T Consensus 374 LaS~SdD-------------~TlkiWs~~------------------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~ 422 (524)
T KOG0273|consen 374 LASCSDD-------------GTLKIWSMG------------------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMN 422 (524)
T ss_pred EEEecCC-------------CeeEeeecC------------------CCcchhhhhhhccceeeEeecCCCCccCCCcCC
Confidence 6665521 112455443 55566677777777888999999863
Q ss_pred --EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004141 331 --LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 331 --l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~ 408 (771)
|+..+.+ +.+.+||+..+........ +...++.++|||||++| .+.+
T Consensus 423 ~~l~sas~d-----------stV~lwdv~~gv~i~~f~k-------------------H~~pVysvafS~~g~yl-AsGs 471 (524)
T KOG0273|consen 423 LMLASASFD-----------STVKLWDVESGVPIHTLMK-------------------HQEPVYSVAFSPNGRYL-ASGS 471 (524)
T ss_pred ceEEEeecC-----------CeEEEEEccCCceeEeecc-------------------CCCceEEEEecCCCcEE-EecC
Confidence 2222222 3466777766554221111 01135788999999976 4555
Q ss_pred eCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeC
Q 004141 409 WGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 409 ~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~ 453 (771)
.++...|| +..++++.+-..+.+.+....|+.+|+.|.+..+.
T Consensus 472 ~dg~V~iw--s~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 472 LDGCVHIW--STKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCCeeEec--cccchheeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence 56666666 56688888777766666778899999888776653
No 160
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.05 E-value=6.9e-09 Score=97.84 Aligned_cols=117 Identities=26% Similarity=0.305 Sum_probs=88.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhh
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D 599 (771)
+....++.|. ..+.+|+|+|+||..- ....|....+.+++.||.|++|++-.... .-+..++++
T Consensus 32 PkpLlI~tP~---~~G~yPVilF~HG~~l--~ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~Ei~~ 95 (307)
T PF07224_consen 32 PKPLLIVTPS---EAGTYPVILFLHGFNL--YNSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDEIKS 95 (307)
T ss_pred CCCeEEecCC---cCCCccEEEEeechhh--hhHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHHHHH
Confidence 3455688887 6788999999999433 24467778899999999999999764211 123445788
Q ss_pred HHHHHHHHHHcC--------CCCCCeEEEEEcChhHHHHHHHHhhCC--CceeEEEecCCccc
Q 004141 600 VLTAIDHVIDMG--------LANPSKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLCN 652 (771)
Q Consensus 600 ~~~~i~~l~~~~--------~~d~~ri~l~G~S~GG~~a~~~a~~~p--~~~~~~v~~~p~~~ 652 (771)
..+.++|+.+.- ..+..+++++|||.||-.|..+|..+. -.|.++|.+.|+..
T Consensus 96 aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G 158 (307)
T PF07224_consen 96 AASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAG 158 (307)
T ss_pred HHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCC
Confidence 888899987641 156789999999999999999998663 24788888888753
No 161
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.04 E-value=4.1e-09 Score=104.81 Aligned_cols=237 Identities=12% Similarity=0.091 Sum_probs=148.4
Q ss_pred ccceEEEeCCC--CCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPS--GSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPd--G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....|+|. +..||..+.++ ...+|.-.+...+-++.... . ....+.|.|+|++|+..+.+.+-
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dg-----tvklw~~~~e~~l~~l~gH~-~------RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADG-----TVKLWKLSQETPLQDLEGHL-A------RVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred cceeeEEEccCCCccceeeeccCC-----ceeeeccCCCcchhhhhcch-h------hheeeeecCCCceeeecccccch
Confidence 56888999997 55677655443 45556222222222221111 1 12689999999999998877653
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~ 255 (771)
+ .|+...+........+........|.+|+.-..++.-+.-=.|||+.+|...-+ ..+. ..+-++.|||+|-.
T Consensus 286 R--lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--L~gH~k~I~~V~fsPNGy~-- 359 (459)
T KOG0272|consen 286 R--LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--LAGHIKEILSVAFSPNGYH-- 359 (459)
T ss_pred h--hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--ecccccceeeEeECCCceE--
Confidence 3 455555555555556666677888999965555555566668999999986665 3443 36789999999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecC-CCCEEEEE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP-DGKFLVFL 334 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~Sp-DG~~l~f~ 334 (771)
|+..+. +. ..-++||- .-.+.-.+..+..-+..++|+| -|++|+..
T Consensus 360 --lATgs~-------------Dn--t~kVWDLR----------------~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 360 --LATGSS-------------DN--TCKVWDLR----------------MRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred --EeecCC-------------CC--cEEEeeec----------------ccccceecccccchhhheEecccCCeEEEEc
Confidence 887661 22 34444441 2233455666667789999999 67778777
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 414 (771)
+.+. .+-+|.-.+....+...+.. .-+.++..|+||..| .+++.+...+
T Consensus 407 syD~-----------t~kiWs~~~~~~~ksLaGHe-------------------~kV~s~Dis~d~~~i-~t~s~DRT~K 455 (459)
T KOG0272|consen 407 SYDN-----------TVKIWSTRTWSPLKSLAGHE-------------------GKVISLDISPDSQAI-ATSSFDRTIK 455 (459)
T ss_pred ccCc-----------ceeeecCCCcccchhhcCCc-------------------cceEEEEeccCCceE-EEeccCceee
Confidence 7664 24444444444332222221 124466789999855 5666677777
Q ss_pred EEE
Q 004141 415 IIS 417 (771)
Q Consensus 415 l~~ 417 (771)
||.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 774
No 162
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.2e-08 Score=111.81 Aligned_cols=282 Identities=14% Similarity=0.135 Sum_probs=170.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....|||||+.++...... +..+|. .... .+.....+..- .+..++|||||+.|+-.+.+.+.
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~-----~i~~~~~~~~~~-~~~~~l~~h~~------~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDG-----LIRIWKLEGIKS-NLLRELSGHTR------GVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCC-----cEEEeecccccc-hhhcccccccc------ceeeeEECCCCcEEEEecCCceE
Confidence 3466689999999988765443 555562 2221 11111111111 23699999999999888887765
Q ss_pred CCCCccC-CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004141 177 SKPTFSL-GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
+ .|+. ......+.+..+..+.....|.++....+.+..+..+.+||+.+++..... ......+....+++||..
T Consensus 228 r--iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~-- 302 (456)
T KOG0266|consen 228 R--IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNL-- 302 (456)
T ss_pred E--EeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCE--
Confidence 5 4444 222344556678888888899999766777888899999999998876662 233347788999999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---ceecCCCCc--cccceeecCCCCE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESIS--SAFFPRFSPDGKF 330 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~lt~~~~--~~~~p~~SpDG~~ 330 (771)
|+..+ .+..|.++|+ .++. ...+..... .+.+..|||+|++
T Consensus 303 --l~s~s---------------~d~~i~vwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ 348 (456)
T KOG0266|consen 303 --LVSAS---------------YDGTIRVWDL-----------------ETGSKLCLKLLSGAENSAPVTSVQFSPNGKY 348 (456)
T ss_pred --EEEcC---------------CCccEEEEEC-----------------CCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence 76654 2336888887 5665 234443333 3788999999998
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
|+-...+ ..|.+||+..+........... . .+ ....+..+++|+.+ ++...+
T Consensus 349 ll~~~~d-----------~~~~~w~l~~~~~~~~~~~~~~----------~----~~--~~~~~~~~~~~~~i-~sg~~d 400 (456)
T KOG0266|consen 349 LLSASLD-----------RTLKLWDLRSGKSVGTYTGHSN----------L----VR--CIFSPTLSTGGKLI-YSGSED 400 (456)
T ss_pred EEEecCC-----------CeEEEEEccCCcceeeecccCC----------c----ce--eEecccccCCCCeE-EEEeCC
Confidence 8765544 3577888876654222111100 0 00 12234447788755 444444
Q ss_pred CeeEEEEEECCCCcEEEe-cCC-CCCceeeEEeecCCEEEEEEeCCCCCCeEE
Q 004141 411 SSQVIISVNVSSGELLRI-TPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVK 461 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l-~~~-~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~ 461 (771)
+. ++.+|+.++..... ... ...+....+.+..+.++......+..-.+|
T Consensus 401 ~~--v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 401 GS--VYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred ce--EEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence 44 55557776654433 333 233333455555555554444344433333
No 163
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.03 E-value=2.8e-08 Score=105.90 Aligned_cols=252 Identities=16% Similarity=0.197 Sum_probs=140.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcc--eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+...++||||+.||...+++ -..+|+ .... ...++...++ ..+.|+.+|+.|+..+-+++
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDg-----KVKvWn~~SgfC~vTFteHts~V----------t~v~f~~~g~~llssSLDGt 415 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDG-----KVKVWNTQSGFCFVTFTEHTSGV----------TAVQFTARGNVLLSSSLDGT 415 (893)
T ss_pred cceeeEEECCCCcEEEeccCCC-----cEEEEeccCceEEEEeccCCCce----------EEEEEEecCCEEEEeecCCe
Confidence 3577899999999998765543 456663 2222 2222333444 58999999999999888877
Q ss_pred CCCCCccCCCCCCCCCCccCCCCC-CcccccCCcCcccCCc--cCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWK-GQGDWEEDWGETYAGK--RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~g~~~~~~--~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
.+..... ....-+....+..-. ..+...+. |+.+... ..-.||+|++++|+...+. ..++..+..++|+|+|.
T Consensus 416 VRAwDlk--RYrNfRTft~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiL-sGHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 416 VRAWDLK--RYRNFRTFTSPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDIL-SGHEGPVSGLSFSPDGS 491 (893)
T ss_pred EEeeeec--ccceeeeecCCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehh-cCCCCcceeeEEccccC
Confidence 6542211 111101000000000 00011111 3333222 2468999999999987772 33455678889999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. |+-.+|... |.++|+=+ ..++.+.|. ....+..++|+|||+.|+
T Consensus 492 ~----LaS~SWDkT---------------VRiW~if~---------------s~~~vEtl~-i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 492 L----LASGSWDKT---------------VRIWDIFS---------------SSGTVETLE-IRSDVLAVSFRPDGKELA 536 (893)
T ss_pred e----EEeccccce---------------EEEEEeec---------------cCceeeeEe-eccceeEEEEcCCCCeEE
Confidence 8 888887533 33444300 334444442 223467899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE------Eeccc---ccCCCCCcccccCCCCCCccccCCCEE
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV------IPVVQ---CAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~------~~~~~---~~~~~~f~g~~~~~~~~~~~s~Dg~~l 403 (771)
....+. +|-.||...+...-...+..++ .+... ..+... ...+++|+||+.|
T Consensus 537 VaTldg-----------qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~--------Ftti~ySaDG~~I 597 (893)
T KOG0291|consen 537 VATLDG-----------QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT--------FTTICYSADGKCI 597 (893)
T ss_pred EEEecc-----------eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc--------eEEEEEcCCCCEE
Confidence 988763 4666665443321111111110 00000 011122 2478899999977
Q ss_pred EEEeeeCCeeEEEEEECCCCcEE
Q 004141 404 LLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
+.. +....+..+++.++-+.
T Consensus 598 lAg---G~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 598 LAG---GESNSICIYDVPEGVLL 617 (893)
T ss_pred Eec---CCcccEEEEECchhhee
Confidence 643 23345777787777544
No 164
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.03 E-value=4.6e-09 Score=100.39 Aligned_cols=154 Identities=18% Similarity=0.314 Sum_probs=97.6
Q ss_pred ceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC
Q 004141 157 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI 236 (771)
Q Consensus 157 ~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~ 236 (771)
.+.|+|+|+.|++.......+. ++.+. +...||.++..+.....+. +
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~------------------------------~ks~~--~~~~l~~~~~~~~~~~~i~-l 56 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKS------------------------------GKSYY--GEFELFYLNEKNIPVESIE-L 56 (194)
T ss_pred EEEecccCCEEEEEEEEeeccC------------------------------cceEE--eeEEEEEEecCCCccceee-c
Confidence 6789999999999876321110 01111 3468999988777766663 3
Q ss_pred CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC
Q 004141 237 PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI 316 (771)
Q Consensus 237 ~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 316 (771)
.....+.+++|||+|+. ++.+.- ..+..+.++|+ ++.....+. .
T Consensus 57 ~~~~~I~~~~WsP~g~~----favi~g-------------~~~~~v~lyd~-----------------~~~~i~~~~--~ 100 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNE----FAVIYG-------------SMPAKVTLYDV-----------------KGKKIFSFG--T 100 (194)
T ss_pred cCCCceEEEEECcCCCE----EEEEEc-------------cCCcccEEEcC-----------------cccEeEeec--C
Confidence 34446899999999999 877641 12225667775 433333332 2
Q ss_pred ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcc
Q 004141 317 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~ 396 (771)
.......|||+|+.|+.....+ ....|.+||....+........ ....+.|
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n--------~~G~l~~wd~~~~~~i~~~~~~---------------------~~t~~~W 151 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGN--------LNGDLEFWDVRKKKKISTFEHS---------------------DATDVEW 151 (194)
T ss_pred CCceEEEECCCCCEEEEEEccC--------CCcEEEEEECCCCEEeeccccC---------------------cEEEEEE
Confidence 3455689999999999877543 1245888988743331111100 1346789
Q ss_pred ccCCCEEEEEee
Q 004141 397 LSDGCTMLLSSI 408 (771)
Q Consensus 397 s~Dg~~l~~~~~ 408 (771)
||||++|+.++.
T Consensus 152 sPdGr~~~ta~t 163 (194)
T PF08662_consen 152 SPDGRYLATATT 163 (194)
T ss_pred cCCCCEEEEEEe
Confidence 999998887664
No 165
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.02 E-value=6.8e-10 Score=124.05 Aligned_cols=128 Identities=25% Similarity=0.289 Sum_probs=91.7
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC-C-cEEEEECCC-CCCCCChhhhhcCCCCccccch
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-G-YSLLIVNYR-GSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~-G-~~Vv~~d~r-G~~~~g~~~~~~~~~~~~~~~~ 597 (771)
+...++.|......++.|+||++|||++........ ....|+.. + ++|+.++|| |..|+.........++ ..+
T Consensus 79 l~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n---~g~ 154 (493)
T cd00312 79 LYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGN---YGL 154 (493)
T ss_pred CeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcc---hhH
Confidence 445688887543467889999999998766544332 23444443 3 999999999 6666654332222233 337
Q ss_pred hhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhh--CCCceeEEEecCCccc
Q 004141 598 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 652 (771)
Q Consensus 598 ~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~p~~~ 652 (771)
.|+..+++|+.++ ...|+++|.|+|+|.||.++.+++.. .+.+|+++|+.++...
T Consensus 155 ~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 155 KDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred HHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 8999999999875 34799999999999999999988875 2457889998887653
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.3e-08 Score=102.46 Aligned_cols=249 Identities=12% Similarity=0.062 Sum_probs=156.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+++....|.|.-. |+.+..-+ +.-++|.++ ......+.+.+..- ++....|+|+|+..+|.+.
T Consensus 214 ~~I~sv~FHp~~p-lllvaG~d-~~lrifqvDGk~N~~lqS~~l~~f---------Pi~~a~f~p~G~~~i~~s~----- 277 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKF---------PIQKAEFAPNGHSVIFTSG----- 277 (514)
T ss_pred CCceEEEecCCCc-eEEEecCC-CcEEEEEecCccChhheeeeeccC---------ccceeeecCCCceEEEecc-----
Confidence 4588999999655 44554443 666788777 33333333333221 2358899999996666543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC--CCccceEEEecCCCCCc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK--SLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~--~~~~~~~~wspDg~~~~ 255 (771)
.+.-+|.||+.+.++.++...-+ ......+..|||++.
T Consensus 278 --------------------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~f-- 317 (514)
T KOG2055|consen 278 --------------------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNF-- 317 (514)
T ss_pred --------------------------------------cceEEEEeeccccccccccCCCCcccchhheeEecCCCCe--
Confidence 23689999999999988841111 235678899999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|++.+ +.++|+++.. .+++...--.-.+.+....||.||+.|+...
T Consensus 318 --ia~~G---------------~~G~I~lLha-----------------kT~eli~s~KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 318 --IAIAG---------------NNGHIHLLHA-----------------KTKELITSFKIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred --EEEcc---------------cCceEEeehh-----------------hhhhhhheeeeccEEeeEEEecCCcEEEEEc
Confidence 99987 4458888876 5555433233467788999999998775443
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
. ..++|+||+..... ...+.. +++. .-.++|.|.+|. ++.+.+..|-.+|
T Consensus 364 -~----------~GeV~v~nl~~~~~----------~~rf~D--~G~v------~gts~~~S~ng~-ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 364 -G----------TGEVYVWNLRQNSC----------LHRFVD--DGSV------HGTSLCISLNGS-YLATGSDSGIVNI 413 (514)
T ss_pred -C----------CceEEEEecCCcce----------EEEEee--cCcc------ceeeeeecCCCc-eEEeccCcceEEE
Confidence 2 23799999987532 111111 1111 124678899998 4455566777788
Q ss_pred EEEE--CCCCcEEEecCCC---CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004141 416 ISVN--VSSGELLRITPAE---SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 416 ~~~d--~~tg~~~~l~~~~---~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~ 469 (771)
|-.+ ..+++.+.+..-. ..+....|++|+..|+.+++... -.+.++.+++.+
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k--nalrLVHvPS~T 470 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKK--NALRLVHVPSCT 470 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccc--cceEEEecccee
Confidence 8654 2344555554322 24566789999886665554333 335555555543
No 167
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.02 E-value=1.6e-07 Score=96.76 Aligned_cols=125 Identities=16% Similarity=0.145 Sum_probs=74.3
Q ss_pred cceeecC-CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc--CCCCCcccccCCCCCCcc
Q 004141 320 FFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 320 ~~p~~Sp-DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~g~~~~~~~~~~~ 396 (771)
..|.+++ ||+ .+|.+.+. .|+.+|+.+.+..... ...++... .++--|| +....++
T Consensus 197 ~rP~~~~~dg~-~~~vs~eG-----------~V~~id~~~~~~~~~~-----~~~~~~~~~~~~~wrP~----g~q~ia~ 255 (352)
T TIGR02658 197 NHPAYSNKSGR-LVWPTYTG-----------KIFQIDLSSGDAKFLP-----AIEAFTEAEKADGWRPG----GWQQVAY 255 (352)
T ss_pred cCCceEcCCCc-EEEEecCC-----------eEEEEecCCCcceecc-----eeeeccccccccccCCC----cceeEEE
Confidence 5567788 775 56777663 4999998765543211 11111111 1122232 2234789
Q ss_pred ccCCCEEEEEeee-------CCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCC-EEEEEEeCCCCCCeEEEEEeccc
Q 004141 397 LSDGCTMLLSSIW-------GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD-NIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 397 s~Dg~~l~~~~~~-------~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~-~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
++||+++|+.... .+..+++.+|..++++..-...........+++|++ .|+.+.... ..+.++|..++
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s---~~VsViD~~t~ 332 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD---KTLYIFDAETG 332 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC---CcEEEEECcCC
Confidence 9999999885532 123589999999998765443333345678999999 555444322 33778776554
No 168
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.01 E-value=8.7e-09 Score=101.89 Aligned_cols=224 Identities=18% Similarity=0.135 Sum_probs=132.7
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 611 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 611 (771)
.-.+.|.++++||-.++ ...|......|+ ..|-.|+++|.|. +|.+..-.. ..+....+|+...++......
T Consensus 48 ~~~~~Pp~i~lHGl~GS--~~Nw~sv~k~Ls~~l~~~v~~vd~Rn---HG~Sp~~~~--h~~~~ma~dv~~Fi~~v~~~~ 120 (315)
T KOG2382|consen 48 NLERAPPAIILHGLLGS--KENWRSVAKNLSRKLGRDVYAVDVRN---HGSSPKITV--HNYEAMAEDVKLFIDGVGGST 120 (315)
T ss_pred ccCCCCceEEecccccC--CCCHHHHHHHhcccccCceEEEeccc---CCCCccccc--cCHHHHHHHHHHHHHHccccc
Confidence 44578999999996655 356777777664 4677999999998 555432211 113344667777777665432
Q ss_pred CCCCCeEEEEEcChhH-HHHHHHHhhCCCceeEEEec--CCc-cch---------hhhhcCCCC----Cc--ch---hhh
Q 004141 612 LANPSKVTVVGGSHGG-FLTTHLIGQAPDKFVAAAAR--NPL-CNL---------ALMVGTTDI----PD--WC---YVE 669 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG-~~a~~~a~~~p~~~~~~v~~--~p~-~~~---------~~~~~~~~~----~~--~~---~~~ 669 (771)
-..++.++|||||| .++++.+...|+.+..+|+. +|. +.. ..+...... +. +. +.+
T Consensus 121 --~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~ 198 (315)
T KOG2382|consen 121 --RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIE 198 (315)
T ss_pred --ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 24579999999999 77777777888877655532 331 110 000000000 00 00 000
Q ss_pred hccCCC--------Cc------cCCC-CCC---hhhHHHHhhcCccccc--CCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004141 670 SYGSKG--------KD------SFTE-SPS---VEDLTRFHSKSPISHI--SKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 670 ~~~~~~--------~~------~~~~-~~~---~~~~~~~~~~sp~~~~--~~i~~P~lii~G~~D~~vp~~~~~~~~~~ 729 (771)
...... .+ .+.. .+. .+....+...+....+ .....|+|+++|.++..++.++-.++.+.
T Consensus 199 ~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~ 278 (315)
T KOG2382|consen 199 VGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKI 278 (315)
T ss_pred HhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHh
Confidence 000000 00 0000 000 1111122122332223 44568999999999999998877777766
Q ss_pred HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+.. +++..++++||+...+. ..++.+.|.+|+.+..
T Consensus 279 fp~----~e~~~ld~aGHwVh~E~-P~~~~~~i~~Fl~~~~ 314 (315)
T KOG2382|consen 279 FPN----VEVHELDEAGHWVHLEK-PEEFIESISEFLEEPE 314 (315)
T ss_pred ccc----hheeecccCCceeecCC-HHHHHHHHHHHhcccC
Confidence 665 89999999999887544 4588999999987653
No 169
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.01 E-value=1.5e-08 Score=87.59 Aligned_cols=186 Identities=17% Similarity=0.220 Sum_probs=116.4
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCC--CCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG--SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG--~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
..-+||+.||.+..+.+..+...+..|+.+|+.|..++++= .--.|.. .+..-...-....+.++..|.+. .
T Consensus 13 ~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~r----kPp~~~~t~~~~~~~~~aql~~~--l 86 (213)
T COG3571 13 APVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRR----KPPPGSGTLNPEYIVAIAQLRAG--L 86 (213)
T ss_pred CCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCC----CCcCccccCCHHHHHHHHHHHhc--c
Confidence 34578888998777777777778889999999999999642 1111110 01111111233445555666555 4
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCCceeEEEec-CCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHh
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
+..++.+-|+||||-++.+++..-...+.++++. .|+.. -++ |. ..
T Consensus 87 ~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp------------------pGK---------Pe-----~~- 133 (213)
T COG3571 87 AEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP------------------PGK---------PE-----QL- 133 (213)
T ss_pred cCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC------------------CCC---------cc-----cc-
Confidence 5678999999999999999987543336666543 23210 011 10 00
Q ss_pred hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC---------CCChHHHHHHHH
Q 004141 693 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---------PQSDFESFLNIG 763 (771)
Q Consensus 693 ~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---------~~~~~~~~~~i~ 763 (771)
-..++..+++|+||.+|+.|++-..++...+ .| ..+++++++.++.|.+-- ..+.....+++.
T Consensus 134 ---Rt~HL~gl~tPtli~qGtrD~fGtr~~Va~y--~l---s~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va 205 (213)
T COG3571 134 ---RTEHLTGLKTPTLITQGTRDEFGTRDEVAGY--AL---SDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVA 205 (213)
T ss_pred ---hhhhccCCCCCeEEeecccccccCHHHHHhh--hc---CCceEEEEeccCccccccccccccccHHHHHHHHHHHHH
Confidence 1256788999999999999999865554211 12 246899999999997542 112223345677
Q ss_pred HHHHH
Q 004141 764 LWFKK 768 (771)
Q Consensus 764 ~fl~~ 768 (771)
.|..+
T Consensus 206 ~~~~~ 210 (213)
T COG3571 206 GWARR 210 (213)
T ss_pred HHHhh
Confidence 77654
No 170
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.01 E-value=6.7e-08 Score=91.95 Aligned_cols=262 Identities=14% Similarity=0.159 Sum_probs=160.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+-+...-||+|+++|+-.+..+ .+++|+ ..+....+.++.. |...-+|||.|+.+|...-+..=
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~TtnK~haipl~s~---------WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTTNKVHAIPLPSS---------WVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred cceeeeEecCCcCeEEeeccCC-----eEEEEEcccccceeEEecCce---------eEEEEEECCCCCeEEecCcCcee
Confidence 4477899999999998776655 677883 3444555555332 34688999999999886533211
Q ss_pred CCCCccCCC------CCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEec-
Q 004141 177 SKPTFSLGS------TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP- 249 (771)
Q Consensus 177 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp- 249 (771)
..+.... .+..+....+..|..-..|..| +..+++.++....+||+++|+....- ......+-.+..+|
T Consensus 122 --siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 122 --SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPS 197 (343)
T ss_pred --EEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCC
Confidence 0111110 0111223344555544456665 78888899999999999999876662 33344678889999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCC
Q 004141 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDG 328 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG 328 (771)
|++. .+-.+ | +..-+++|+ ..+. .+....+...+.+++|-|+|
T Consensus 198 ~~nt----FvSg~------------c---D~~aklWD~-----------------R~~~c~qtF~ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 198 DGNT----FVSGG------------C---DKSAKLWDV-----------------RSGQCVQTFEGHESDINSVRFFPSG 241 (343)
T ss_pred CCCe----EEecc------------c---ccceeeeec-----------------cCcceeEeecccccccceEEEccCC
Confidence 8887 44333 1 124556665 3344 45566677779999999999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004141 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~ 408 (771)
..++.-+.+. ...++|+..+....+-+... .. ..+.++.||.-|+ |+|...
T Consensus 242 ~afatGSDD~-----------tcRlyDlRaD~~~a~ys~~~-----------~~------~gitSv~FS~SGR-lLfagy 292 (343)
T KOG0286|consen 242 DAFATGSDDA-----------TCRLYDLRADQELAVYSHDS-----------II------CGITSVAFSKSGR-LLFAGY 292 (343)
T ss_pred CeeeecCCCc-----------eeEEEeecCCcEEeeeccCc-----------cc------CCceeEEEccccc-EEEeee
Confidence 9776655442 25566777655433222110 01 1367889999998 445544
Q ss_pred eCCeeEEEEEECCCCcEEEe-cCCCCCceeeEEeecCC
Q 004141 409 WGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGD 445 (771)
Q Consensus 409 ~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~dg~ 445 (771)
.+.+..+| |.-.++..-+ .....-++-...+|||-
T Consensus 293 ~d~~c~vW--Dtlk~e~vg~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 293 DDFTCNVW--DTLKGERVGVLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred cCCceeEe--eccccceEEEeeccCCeeEEEEECCCCc
Confidence 44444444 6555555443 43333455567777774
No 171
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.01 E-value=1.9e-08 Score=96.20 Aligned_cols=165 Identities=16% Similarity=0.233 Sum_probs=101.7
Q ss_pred ceEEEeCCCCCeEEEEecCC--C------CCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004141 101 ASAVVPSPSGSKLLVVRNPE--N------ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
.....|+|+|+.|++..... . +...+|.+...+.....+.+... + .+..++|||+|+++|.+..
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~--~------~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE--G------PIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC--C------ceEEEEECcCCCEEEEEEc
Confidence 55678999999999977631 1 23456666533333444443221 1 1269999999999988743
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
. ....+.++|+.+..+..+ . ......+.|||+|+
T Consensus 80 ~------------------------------------------~~~~v~lyd~~~~~i~~~---~-~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 80 S------------------------------------------MPAKVTLYDVKGKKIFSF---G-TQPRNTISWSPDGR 113 (194)
T ss_pred c------------------------------------------CCcccEEEcCcccEeEee---c-CCCceEEEECCCCC
Confidence 1 123677788765444444 2 23456789999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. |+..+.. +..+.|..+|. ...+...... ........|||||++|+
T Consensus 114 ~----l~~~g~~------------n~~G~l~~wd~-----------------~~~~~i~~~~-~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 114 F----LVLAGFG------------NLNGDLEFWDV-----------------RKKKKISTFE-HSDATDVEWSPDGRYLA 159 (194)
T ss_pred E----EEEEEcc------------CCCcEEEEEEC-----------------CCCEEeeccc-cCcEEEEEEcCCCCEEE
Confidence 8 8887621 23347888887 4333222222 22367899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
....... ....+.+.+|+..+
T Consensus 160 ta~t~~r-----~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 160 TATTSPR-----LRVDNGFKIWSFQG 180 (194)
T ss_pred EEEeccc-----eeccccEEEEEecC
Confidence 8775421 12234456666654
No 172
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.99 E-value=4.6e-09 Score=110.72 Aligned_cols=190 Identities=19% Similarity=0.223 Sum_probs=99.2
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCC-CCC---C--Chhh-hhc-------------CCCCccc
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG-SLG---F--GEEA-LQS-------------LPGKVGS 594 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG-~~~---~--g~~~-~~~-------------~~~~~~~ 594 (771)
.++|+|||-||-++. ...|...+..||++||+|++++.|- +.. + .... ... .......
T Consensus 98 ~~~PvvIFSHGlgg~--R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGS--RTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT----TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCCcc--hhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 679999999996665 4568899999999999999999993 321 0 1110 000 0000000
Q ss_pred -----------cchhhHHHHHHHHHH--c------------------CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeE
Q 004141 595 -----------QDVNDVLTAIDHVID--M------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643 (771)
Q Consensus 595 -----------~~~~D~~~~i~~l~~--~------------------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~ 643 (771)
.-..|+..+++.|.+ . +.+|.++|+++|||+||..++.++.+. .+|++
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~ 254 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKA 254 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--E
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcce
Confidence 113456666666643 1 225678999999999999999888774 67999
Q ss_pred EEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHH
Q 004141 644 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 644 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~ 723 (771)
+|+..|.. + |... .....++.|+|+|+.+. ..-....
T Consensus 255 ~I~LD~W~---------------~---------------Pl~~-----------~~~~~i~~P~L~InSe~--f~~~~~~ 291 (379)
T PF03403_consen 255 GILLDPWM---------------F---------------PLGD-----------EIYSKIPQPLLFINSES--FQWWENI 291 (379)
T ss_dssp EEEES------------------T---------------TS-G-----------GGGGG--S-EEEEEETT--T--HHHH
T ss_pred EEEeCCcc---------------c---------------CCCc-----------ccccCCCCCEEEEECcc--cCChhhH
Confidence 99877642 1 0000 01134678999998875 2222222
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCC------CC------------CC----hHHHHHHHHHHHHHhhC
Q 004141 724 LQYARALREKGVETKVIVFPNDVHGIE------RP------------QS----DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~------~~------------~~----~~~~~~~i~~fl~~~L~ 771 (771)
..+.+ +...+....++.+.|..|.-. .+ .. .....+.+++||++||+
T Consensus 292 ~~~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 292 FRMKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp HHHHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 22222 333445678899999999421 11 01 12234568899999974
No 173
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.98 E-value=5.9e-08 Score=99.00 Aligned_cols=282 Identities=13% Similarity=0.103 Sum_probs=153.1
Q ss_pred echhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEe
Q 004141 62 QPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFH 140 (771)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~ 140 (771)
..-+.++...+.+..||++.=....+-+ ..-.|++...+...+|||.|.+|+.++. +.|.-+++ ++-.......
T Consensus 179 GaR~~sGs~Dy~v~~wDf~gMdas~~~f-r~l~P~E~h~i~sl~ys~Tg~~iLvvsg----~aqakl~DRdG~~~~e~~K 253 (641)
T KOG0772|consen 179 GARFVSGSLDYTVKFWDFQGMDASMRSF-RQLQPCETHQINSLQYSVTGDQILVVSG----SAQAKLLDRDGFEIVEFSK 253 (641)
T ss_pred CceeeeccccceEEEEecccccccchhh-hccCcccccccceeeecCCCCeEEEEec----CcceeEEccCCceeeeeec
Confidence 3345566777888888875443322211 1224566677899999999999999864 33555555 3322222221
Q ss_pred cCCcccccccCCC---cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccC
Q 004141 141 VPQTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQ 217 (771)
Q Consensus 141 ~~~~~~g~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~ 217 (771)
....+..-..+-| .+.+-+|.|+.+-.+..+.. .
T Consensus 254 GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~-------------------------------------------D 290 (641)
T KOG0772|consen 254 GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY-------------------------------------------D 290 (641)
T ss_pred cchhhhhhhccCCceeeeeccccccCcccceEEecC-------------------------------------------C
Confidence 1111100000001 22467899998876654322 2
Q ss_pred ceEEEEEccCCc--eeecc---CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 218 PSLFVININSGE--VQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 218 ~~l~v~d~~~~~--~~~l~---~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
..|.+||++.-+ .+.+. .-.....+..-+|+|||+. |+.. |.+...++|...-
T Consensus 291 gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~----iAag-------------c~DGSIQ~W~~~~----- 348 (641)
T KOG0772|consen 291 GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL----IAAG-------------CLDGSIQIWDKGS----- 348 (641)
T ss_pred CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch----hhhc-------------ccCCceeeeecCC-----
Confidence 456666665432 22221 0112335667899999998 7654 4444344444310
Q ss_pred hhhhhhhhcCCCCCCcc----eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC-CCCccc
Q 004141 293 EASELELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEK 367 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~----~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~ 367 (771)
-+..+ +.-......+.+.+||+||++|+-.+.++ .|.+||+..-+. ...-.+
T Consensus 349 ------------~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~-----------tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 349 ------------RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD-----------TLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred ------------cccccceEeeeccCCCCceeEEEeccccchhhhccCCC-----------ceeeeeccccccchhhhcC
Confidence 11111 11112223588999999999998666554 488888865332 111111
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee---CCeeEEEEEECCCCc-EEEecCCCCCceeeEEeec
Q 004141 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW---GSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLD 443 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~---~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~d 443 (771)
. ...|+ -...+||||.+.|+--++. .....|+.+|..+-+ +.+|......+....|-|.
T Consensus 406 L-----------~t~~~------~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 406 L-----------PTPFP------GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred C-----------CccCC------CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence 1 12233 2578999999855443331 123368888876644 3344444444556677777
Q ss_pred CCEEEEEEeC
Q 004141 444 GDNIIAVSSS 453 (771)
Q Consensus 444 g~~l~~~~~~ 453 (771)
=++|++.+.+
T Consensus 469 LNQi~~gsgd 478 (641)
T KOG0772|consen 469 LNQIFAGSGD 478 (641)
T ss_pred hhheeeecCC
Confidence 7777665544
No 174
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.97 E-value=2.8e-08 Score=110.46 Aligned_cols=179 Identities=12% Similarity=0.082 Sum_probs=112.5
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc
Q 004141 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 234 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~ 234 (771)
...+..||||+++||+....... .....+||+.+. ++..+.+
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~------------------------------------~d~~s~Lwv~~~-gg~~~~l- 393 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGA------------------------------------PDPASSLWVGPL-GGVAVQV- 393 (591)
T ss_pred cccceECCCCCEEEEEEeecCCC------------------------------------CCcceEEEEEeC-CCcceee-
Confidence 36899999999999987532110 113479999997 4445677
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC
Q 004141 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 314 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 314 (771)
+.+. ....+.|||||+. |+|++... ++.+........+||.+++ ++++.++ .
T Consensus 394 -t~g~-~~t~PsWspDG~~----lw~v~dg~---~~~~v~~~~~~gql~~~~v-----------------d~ge~~~--~ 445 (591)
T PRK13616 394 -LEGH-SLTRPSWSLDADA----VWVVVDGN---TVVRVIRDPATGQLARTPV-----------------DASAVAS--R 445 (591)
T ss_pred -ecCC-CCCCceECCCCCc----eEEEecCc---ceEEEeccCCCceEEEEec-----------------cCchhhh--c
Confidence 4444 3789999999999 99987421 1222222224468999988 6676655 3
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCcccccccee---eecCCCCCCCCccceeeEEecccccCCCCCcccccCCC
Q 004141 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR---IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSI 391 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~ 391 (771)
..+.+.+++|||||++|+|+... +|++ .....|. ..++.-. .+.. . .....
T Consensus 446 ~~g~Issl~wSpDG~RiA~i~~g------------~v~Va~Vvr~~~G~-~~l~~~~-~l~~--------~----l~~~~ 499 (591)
T PRK13616 446 VPGPISELQLSRDGVRAAMIIGG------------KVYLAVVEQTEDGQ-YALTNPR-EVGP--------G----LGDTA 499 (591)
T ss_pred cCCCcCeEEECCCCCEEEEEECC------------EEEEEEEEeCCCCc-eeecccE-Eeec--------c----cCCcc
Confidence 34568999999999999999821 4666 3333333 3332111 1100 0 00113
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004141 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 392 ~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
.++.|..|++ |+... ......+|.+++++...+.
T Consensus 500 ~~l~W~~~~~-L~V~~-~~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 500 VSLDWRTGDS-LVVGR-SDPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred ccceEecCCE-EEEEe-cCCCCceEEEecCCccccc
Confidence 4678999998 54443 3455668999997555443
No 175
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.95 E-value=9.1e-08 Score=97.95 Aligned_cols=269 Identities=14% Similarity=0.168 Sum_probs=146.9
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004141 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..+++|+.+++... .+.+.++++.... ....+... ........|+|+++.+++....+ .+
T Consensus 16 ~~~~~~~~l~~~~~---------~g~i~i~~~~~~~-~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~~~-----~i 75 (289)
T cd00200 16 AFSPDGKLLATGSG---------DGTIKVWDLETGE-LLRTLKGH-----TGPVRDVAASADGTYLASGSSDK-----TI 75 (289)
T ss_pred EEcCCCCEEEEeec---------CcEEEEEEeeCCC-cEEEEecC-----CcceeEEEECCCCCEEEEEcCCC-----eE
Confidence 34668888777542 3466666664332 11222211 13456889999998888765432 33
Q ss_pred EEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 128 ELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 128 ~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
.+| ..++.......... .+..+.|+|+++.|+........ ..|+............+........|.
T Consensus 76 ~i~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 76 RLWDLETGECVRTLTGHTS---------YVSSVAFSPDGRILSSSSRDKTI--KVWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred EEEEcCcccceEEEeccCC---------cEEEEEEcCCCCEEEEecCCCeE--EEEECCCcEEEEEeccCCCcEEEEEEc
Confidence 344 22222222221111 12689999997766555423321 122221111111111222233455566
Q ss_pred CCcCcccCCcc-CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004141 206 EDWGETYAGKR-QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 206 ~d~g~~~~~~~-~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
++ +..+.... ...|++||+.+++..... ......+..+.|+|+++. |++.+. ...|.+
T Consensus 145 ~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~~---------------~~~i~i 203 (289)
T cd00200 145 PD-GTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEK----LLSSSS---------------DGTIKL 203 (289)
T ss_pred Cc-CCEEEEEcCCCcEEEEEccccccceeE-ecCccccceEEECCCcCE----EEEecC---------------CCcEEE
Confidence 66 33343333 788999999876654441 223346788999999987 877762 336888
Q ss_pred EecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004141 285 VRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
+|+ ..++. ..+......+....|+|+++.++..+.+ ..|+++++.+++...
T Consensus 204 ~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~i~i~~~~~~~~~~ 255 (289)
T cd00200 204 WDL-----------------STGKCLGTLRGHENGVNSVAFSPDGYLLASGSED-----------GTIRVWDLRTGECVQ 255 (289)
T ss_pred EEC-----------------CCCceecchhhcCCceEEEEEcCCCcEEEEEcCC-----------CcEEEEEcCCceeEE
Confidence 887 44433 3333455578889999997765544422 358888887644321
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
.... ....+..+.|+++++.|+ +...++...+|
T Consensus 256 ~~~~-------------------~~~~i~~~~~~~~~~~l~-~~~~d~~i~iw 288 (289)
T cd00200 256 TLSG-------------------HTNSVTSLAWSPDGKRLA-SGSADGTIRIW 288 (289)
T ss_pred Eccc-------------------cCCcEEEEEECCCCCEEE-EecCCCeEEec
Confidence 1110 001245678999988654 44455555554
No 176
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.95 E-value=8.8e-08 Score=92.46 Aligned_cols=106 Identities=22% Similarity=0.242 Sum_probs=77.5
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
.+.+..+||-+||.|++ ...|......|.+.|++++.+||+| +|..... + -....-.+-...++.+.++-.
T Consensus 31 ~gs~~gTVv~~hGsPGS--H~DFkYi~~~l~~~~iR~I~iN~PG---f~~t~~~--~--~~~~~n~er~~~~~~ll~~l~ 101 (297)
T PF06342_consen 31 SGSPLGTVVAFHGSPGS--HNDFKYIRPPLDEAGIRFIGINYPG---FGFTPGY--P--DQQYTNEERQNFVNALLDELG 101 (297)
T ss_pred CCCCceeEEEecCCCCC--ccchhhhhhHHHHcCeEEEEeCCCC---CCCCCCC--c--ccccChHHHHHHHHHHHHHcC
Confidence 34456799999999987 5578888899999999999999999 4332110 0 011123444555666666655
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~ 650 (771)
++ +++.++|||.|+-.|+.++..+| ..++++++|.
T Consensus 102 i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 102 IK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred CC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 55 78999999999999999999886 4577777764
No 177
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.95 E-value=2.1e-09 Score=111.59 Aligned_cols=133 Identities=23% Similarity=0.259 Sum_probs=91.2
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCC-cEEEEECCC-CCCCCCh-hhhhcCCC
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYR-GSLGFGE-EALQSLPG 590 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G-~~Vv~~d~r-G~~~~g~-~~~~~~~~ 590 (771)
+.|.+-| .++.|. .+.++.|+|||+|||.+..+.. .....-..|+++| ++|+.+||| |.-||=. +.......
T Consensus 76 sEDCL~L--NIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~ 151 (491)
T COG2272 76 SEDCLYL--NIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDA 151 (491)
T ss_pred cccceeE--EeeccC--CCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhcccccc
Confidence 4455444 577887 3567799999999988765443 2223456788888 999999999 3323211 11110011
Q ss_pred CccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhCCC---ceeEEEecCCccc
Q 004141 591 KVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCN 652 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~p~~~ 652 (771)
.....-+.|++.+++|+.++ ..-|+++|.|+|+|.||+.++.+++- |. +|+.+|+.||.+.
T Consensus 152 ~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 152 FASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 11123478999999999876 34799999999999999999988764 43 6777787777653
No 178
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.94 E-value=2.3e-07 Score=86.95 Aligned_cols=228 Identities=14% Similarity=0.192 Sum_probs=130.7
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+....|+|-..-+.++...+ + -..+| ..++....+....+. -.+.|||||+++++...
T Consensus 66 svdql~w~~~~~d~~atas~d-k---~ir~wd~r~~k~~~~i~~~~en----------i~i~wsp~g~~~~~~~k----- 126 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGD-K---TIRIWDIRSGKCTARIETKGEN----------INITWSPDGEYIAVGNK----- 126 (313)
T ss_pred chhhheeCCCCCcceEEecCC-c---eEEEEEeccCcEEEEeeccCcc----------eEEEEcCCCCEEEEecC-----
Confidence 355677877665554443322 2 33444 234444444432222 28899999999999633
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
...|-.+|..+-++..- .+-........|+-++.
T Consensus 127 ---------------------------------------dD~it~id~r~~~~~~~--~~~~~e~ne~~w~~~nd----- 160 (313)
T KOG1407|consen 127 ---------------------------------------DDRITFIDARTYKIVNE--EQFKFEVNEISWNNSND----- 160 (313)
T ss_pred ---------------------------------------cccEEEEEecccceeeh--hcccceeeeeeecCCCC-----
Confidence 35677777766554443 23344566788996655
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+.|..+ ..+.|-++..+ .-.....|..+...+....|+|||+++|..+.+
T Consensus 161 ~Fflt~--------------GlG~v~ILsyp----------------sLkpv~si~AH~snCicI~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 161 LFFLTN--------------GLGCVEILSYP----------------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD 210 (313)
T ss_pred EEEEec--------------CCceEEEEecc----------------ccccccccccCCcceEEEEECCCCceEeecccc
Confidence 777663 22344444431 223445566677778889999999999877765
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
. .+-+||++ +...+ ..|+. ....+..++||-||++| .+.+.+.-..|.
T Consensus 211 A-----------lvSLWD~~--ELiC~----------------R~isR-ldwpVRTlSFS~dg~~l-ASaSEDh~IDIA- 258 (313)
T KOG1407|consen 211 A-----------LVSLWDVD--ELICE----------------RCISR-LDWPVRTLSFSHDGRML-ASASEDHFIDIA- 258 (313)
T ss_pred c-----------eeeccChh--Hhhhh----------------eeecc-ccCceEEEEeccCccee-eccCccceEEeE-
Confidence 3 23445543 22111 00110 01135678899999966 454444444454
Q ss_pred EECCCCc-EEEecCCCCCceeeEEeecCCEEEEEEeCCCC
Q 004141 418 VNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 456 (771)
Q Consensus 418 ~d~~tg~-~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 456 (771)
+..||. +..|.-... .....|-|....|+|+++..+.
T Consensus 259 -~vetGd~~~eI~~~~~-t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 259 -EVETGDRVWEIPCEGP-TFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred -ecccCCeEEEeeccCC-ceeEEecCCCceeeEEecCCCC
Confidence 445664 445544333 3446788887778887766655
No 179
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.91 E-value=9.5e-09 Score=103.36 Aligned_cols=120 Identities=22% Similarity=0.291 Sum_probs=85.1
Q ss_pred CceEEEEEEecCCCCC---CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC---
Q 004141 518 QKPFEAIFVSSSHKKD---CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--- 591 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~---~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~--- 591 (771)
+.++...++.|..... ..+.|+|++-||.+.. ...|...++.+++.||.|..++.+|+..-+.......+..
T Consensus 49 ~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p 126 (365)
T COG4188 49 DRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAP 126 (365)
T ss_pred CCccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccch
Confidence 4456667787765321 2478999999995544 5678889999999999999999998653222211111111
Q ss_pred -ccccchhhHHHHHHHHHHc---C----CCCCCeEEEEEcChhHHHHHHHHhhCCC
Q 004141 592 -VGSQDVNDVLTAIDHVIDM---G----LANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 592 -~~~~~~~D~~~~i~~l~~~---~----~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
.......|+...+++|.+. + .+|..+|+++|||+||+.++.++.-+.+
T Consensus 127 ~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 127 AEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred hhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 1112367888888888776 4 3789999999999999999998875443
No 180
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=3.7e-07 Score=86.10 Aligned_cols=227 Identities=16% Similarity=0.237 Sum_probs=132.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC-CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ-SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||.|++||..+... ...+| +. ++..-+..+ .+... ...+++||++|.+||.-+.+
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~-----t~~Iw~k~~~efecv~~l-EGHEn------EVK~Vaws~sG~~LATCSRD--- 126 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDA-----TVVIWKKEDGEFECVATL-EGHEN------EVKCVAWSASGNYLATCSRD--- 126 (312)
T ss_pred heeeeeeecCCCcEEEEeeccc-----eEEEeecCCCceeEEeee-ecccc------ceeEEEEcCCCCEEEEeeCC---
Confidence 4588999999999999887764 55666 32 232222222 11111 12599999999999986543
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce----eeccCCCCCCccceEEEecCCC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV----QAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~----~~l~~~~~~~~~~~~~wspDg~ 252 (771)
..+|+|.++.+.. -.| .+..-.+..+.|.|--.
T Consensus 127 -----------------------------------------KSVWiWe~deddEfec~aVL--~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 127 -----------------------------------------KSVWIWEIDEDDEFECIAVL--QEHTQDVKHVIWHPTED 163 (312)
T ss_pred -----------------------------------------CeEEEEEecCCCcEEEEeee--ccccccccEEEEcCCcc
Confidence 4678888765432 223 34445678899999765
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-CcceecCCCCccccceeecCCCCEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
|+|+.. ++....+|.-+.+ +. .-...|..+...+.+..|.|.|.+|
T Consensus 164 -----lL~S~S------------YDnTIk~~~~~~d----------------ddW~c~~tl~g~~~TVW~~~F~~~G~rl 210 (312)
T KOG0645|consen 164 -----LLFSCS------------YDNTIKVYRDEDD----------------DDWECVQTLDGHENTVWSLAFDNIGSRL 210 (312)
T ss_pred -----eeEEec------------cCCeEEEEeecCC----------------CCeeEEEEecCccceEEEEEecCCCceE
Confidence 666541 2222234443321 11 1245677777789999999999999
Q ss_pred EEEecCCCCCCC------CccccccceeeecCCCCCCCCccceeeEEecccccCC---CCC------cccccCCCCCCcc
Q 004141 332 VFLSAKSSVDSG------AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG---DCF------PGLYSSSILSNPW 396 (771)
Q Consensus 332 ~f~~~~~~~~~g------~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~f------~g~~~~~~~~~~~ 396 (771)
+-.+.+..+..- ++.....||.+.|.++ . ..+.+.+..+.+++.... ..+ .+.+...+.++.|
T Consensus 211 ~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~-~-IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 211 VSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNG-V-IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred EEecCCcceEeeeeccCcchhcccceEeeeeccc-c-eEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 988877543210 0011134554544411 1 112222333333332211 111 1123345778899
Q ss_pred ccCCCEEEEEeeeCCeeEEEEE
Q 004141 397 LSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 397 s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
.|..+-++++...+|..++|.+
T Consensus 289 ~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred cCCCCCceeecCCCceEEEEEe
Confidence 9976667777777788788765
No 181
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=4.4e-07 Score=87.69 Aligned_cols=254 Identities=12% Similarity=0.080 Sum_probs=135.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+....||+||..++..++.+ .-++|.. ..+...+.+.. .-++ ....|......+++.+......
T Consensus 15 ~~i~sl~fs~~G~~litss~dD--sl~LYd~-~~g~~~~ti~skkyG~----------~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDD--SLRLYDS-LSGKQVKTINSKKYGV----------DLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred CceeEEEecCCCCEEEEecCCC--eEEEEEc-CCCceeeEeecccccc----------cEEEEecCCceEEEccCCCCCc
Confidence 4578899999999998754432 2333322 34444444443 2244 3667777777787777633222
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
-.+....+.+-.+-...+..-.....-+|-...-+.+..+..|.+||+...+.+-+ .... ...-+++.|.|
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~--l~~~-~~pi~AfDp~G------ 152 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL--LNLS-GRPIAAFDPEG------ 152 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--EecC-CCcceeECCCC------
Confidence 12222222221122222222222333333322233444567999999987766555 2211 22346889988
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--eecC-CCCccccceeecCCCCEEEEE
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLT-ESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~lt-~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+|+.-- ....|.++|+-.. +.|.- -.++ ..........||||||.|+..
T Consensus 153 LifA~~~-------------~~~~IkLyD~Rs~--------------dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls 205 (311)
T KOG1446|consen 153 LIFALAN-------------GSELIKLYDLRSF--------------DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS 205 (311)
T ss_pred cEEEEec-------------CCCeEEEEEeccc--------------CCCCceeEccCCCCccceeeeEEcCCCCEEEEE
Confidence 5555411 1114566665210 22322 2233 223346778999999999876
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 414 (771)
.+. ..++++|.-+|..+.--+.. +....+ ..+.+|+|||+.| ++.+.++...
T Consensus 206 T~~-----------s~~~~lDAf~G~~~~tfs~~---------~~~~~~-------~~~a~ftPds~Fv-l~gs~dg~i~ 257 (311)
T KOG1446|consen 206 TNA-----------SFIYLLDAFDGTVKSTFSGY---------PNAGNL-------PLSATFTPDSKFV-LSGSDDGTIH 257 (311)
T ss_pred eCC-----------CcEEEEEccCCcEeeeEeec---------cCCCCc-------ceeEEECCCCcEE-EEecCCCcEE
Confidence 654 35889987776632211110 001111 1367899999955 5555555555
Q ss_pred EEEEECCCCcEEEecCC
Q 004141 415 IISVNVSSGELLRITPA 431 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~ 431 (771)
+| ++++|+....+.+
T Consensus 258 vw--~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 258 VW--NLETGKKVAVLRG 272 (311)
T ss_pred EE--EcCCCcEeeEecC
Confidence 55 6678876655544
No 182
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.90 E-value=4.4e-08 Score=90.20 Aligned_cols=188 Identities=21% Similarity=0.257 Sum_probs=117.5
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCC-----CCCC-CChhhhhcCC-CCccccchhh---HHHHHHH
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-----GSLG-FGEEALQSLP-GKVGSQDVND---VLTAIDH 606 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~r-----G~~~-~g~~~~~~~~-~~~~~~~~~D---~~~~i~~ 606 (771)
..+||++||-+.+ ...+...+.-+.-.....++|.-+ ..++ .+..|..... ...+..+.+. ....+..
T Consensus 3 ~atIi~LHglGDs--g~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~ 80 (206)
T KOG2112|consen 3 TATIIFLHGLGDS--GSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIAN 80 (206)
T ss_pred eEEEEEEecCCCC--CccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHH
Confidence 3579999996554 234444444344455556666421 1111 1112211110 0011112222 2233444
Q ss_pred HHHc---CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCC
Q 004141 607 VIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP 683 (771)
Q Consensus 607 l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (771)
|+++ ..++.+||++-|.|+||.++++.+..++..+.+++..++...... ...+.| +
T Consensus 81 Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~----~~~~~~-----------------~ 139 (206)
T KOG2112|consen 81 LIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS----IGLPGW-----------------L 139 (206)
T ss_pred HHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch----hhccCC-----------------c
Confidence 4432 347899999999999999999999988776666666655432110 000111 0
Q ss_pred ChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHH
Q 004141 684 SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 763 (771)
Q Consensus 684 ~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 763 (771)
+. .+ .+|++..||+.|++||..-+....+.|+..+.++++..|++.+|... .+-+..+.
T Consensus 140 ------------~~--~~--~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~-----~~e~~~~~ 198 (206)
T KOG2112|consen 140 ------------PG--VN--YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS-----PQELDDLK 198 (206)
T ss_pred ------------cc--cC--cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc-----HHHHHHHH
Confidence 00 00 57999999999999999999999999999999999999999999775 45678888
Q ss_pred HHHHH
Q 004141 764 LWFKK 768 (771)
Q Consensus 764 ~fl~~ 768 (771)
.|+++
T Consensus 199 ~~~~~ 203 (206)
T KOG2112|consen 199 SWIKT 203 (206)
T ss_pred HHHHH
Confidence 88876
No 183
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.89 E-value=2.4e-08 Score=94.39 Aligned_cols=205 Identities=16% Similarity=0.135 Sum_probs=107.9
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC--C
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG--L 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--~ 612 (771)
.+..++.+.|-|+... .|..+...|.. -+.++.+.|+|.+ .. .+.....|+...++.+.... .
T Consensus 6 ~~~~L~cfP~AGGsa~---~fr~W~~~lp~-~iel~avqlPGR~---~r--------~~ep~~~di~~Lad~la~el~~~ 70 (244)
T COG3208 6 ARLRLFCFPHAGGSAS---LFRSWSRRLPA-DIELLAVQLPGRG---DR--------FGEPLLTDIESLADELANELLPP 70 (244)
T ss_pred CCceEEEecCCCCCHH---HHHHHHhhCCc-hhheeeecCCCcc---cc--------cCCcccccHHHHHHHHHHHhccc
Confidence 3444566666655443 34444444422 4889999999943 22 22223556666666555532 1
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCC---ceeEEEe---cCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCC--
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAA---RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS-- 684 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 684 (771)
.-...++++||||||.+|..+|.+... ...++.+ .+|..+ .........+-.+...+ ..+.+.+.
T Consensus 71 ~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~--~~~~i~~~~D~~~l~~l-----~~lgG~p~e~ 143 (244)
T COG3208 71 LLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYD--RGKQIHHLDDADFLADL-----VDLGGTPPEL 143 (244)
T ss_pred cCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCc--ccCCccCCCHHHHHHHH-----HHhCCCChHH
Confidence 233579999999999999999875311 1222222 223111 11111111111111111 11222221
Q ss_pred hhhHHHHhhcCcc-----------cc--cCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004141 685 VEDLTRFHSKSPI-----------SH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 685 ~~~~~~~~~~sp~-----------~~--~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
.++.+.+.-.-|+ .+ -..+.+|+.++.|++|..|..++...+.+..+. ..++.+++| ||.+..
T Consensus 144 led~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdG-gHFfl~ 219 (244)
T COG3208 144 LEDPELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDG-GHFFLN 219 (244)
T ss_pred hcCHHHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecC-cceehh
Confidence 1222222211121 11 135789999999999999987776666665543 589999976 898763
Q ss_pred CCChHHHHHHHHHHH
Q 004141 752 PQSDFESFLNIGLWF 766 (771)
Q Consensus 752 ~~~~~~~~~~i~~fl 766 (771)
.. ..++...+.+.+
T Consensus 220 ~~-~~~v~~~i~~~l 233 (244)
T COG3208 220 QQ-REEVLARLEQHL 233 (244)
T ss_pred hh-HHHHHHHHHHHh
Confidence 32 224444444443
No 184
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.89 E-value=4.9e-08 Score=95.33 Aligned_cols=208 Identities=13% Similarity=0.038 Sum_probs=122.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC----cEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G----~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
....+|.|+++.+..++|+++++||--+.... ......+.|.+.| ..+|.+|+--... -++..+ .. ..-
T Consensus 82 ~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g-~i~~~~dsli~~g~i~pai~vgid~~d~~~----R~~~~~-~n-~~~ 154 (299)
T COG2382 82 RRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSG-RIPRILDSLIAAGEIPPAILVGIDYIDVKK----RREELH-CN-EAY 154 (299)
T ss_pred eeEEEEeCCCCCccccccEEEEeccHHHHhcC-ChHHHHHHHHHcCCCCCceEEecCCCCHHH----HHHHhc-cc-HHH
Confidence 55678889999888999999999994332211 2233455555554 6788888643111 111111 10 001
Q ss_pred hhhHH-HHHHHHHHcCC--CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004141 597 VNDVL-TAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 597 ~~D~~-~~i~~l~~~~~--~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
...+. +.+-++.+... -+.++-+|+|.|+||.++++.+.++|+.|..++..+|.+........
T Consensus 155 ~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~~~-------------- 220 (299)
T COG2382 155 WRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLDTQ-------------- 220 (299)
T ss_pred HHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCccccc--------------
Confidence 12222 22334444432 35677899999999999999999999999999999998653311100
Q ss_pred CCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004141 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
+..+... ..+-.........-++...++.+.++ ...+++++.|+..|.+..+..|+| ||...
T Consensus 221 ---------~~~~~~~---~l~~~~a~~~~~~~~l~~g~~~~~~~--~pNr~L~~~L~~~g~~~~yre~~G-gHdw~--- 282 (299)
T COG2382 221 ---------PQGEVAE---SLKILHAIGTDERIVLTTGGEEGDFL--RPNRALAAQLEKKGIPYYYREYPG-GHDWA--- 282 (299)
T ss_pred ---------cccchhh---hhhhhhccCccceEEeecCCcccccc--chhHHHHHHHHhcCCcceeeecCC-CCchh---
Confidence 0000001 01111111122222333444444455 456789999999999999999998 99653
Q ss_pred ChHHHHHHHHHHHHHhh
Q 004141 754 SDFESFLNIGLWFKKYC 770 (771)
Q Consensus 754 ~~~~~~~~i~~fl~~~L 770 (771)
.+-..+.++|...+
T Consensus 283 ---~Wr~~l~~~L~~l~ 296 (299)
T COG2382 283 ---WWRPALAEGLQLLL 296 (299)
T ss_pred ---HhHHHHHHHHHHhh
Confidence 34445666665543
No 185
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.89 E-value=9.7e-08 Score=104.62 Aligned_cols=238 Identities=16% Similarity=0.156 Sum_probs=149.1
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC---CcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ---SQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
...+...+|||||+.++-.+.+. .+.+|+- +...+.+. ....+ .+++|+|+|+.|+..+.+
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~-----tiriwd~~~~~~~~~~l~gH~~~v----------~~~~f~p~g~~i~Sgs~D 267 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDK-----TLRIWDLKDDGRNLKTLKGHSTYV----------TSVAFSPDGNLLVSGSDD 267 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCc-----eEEEeeccCCCeEEEEecCCCCce----------EEEEecCCCCEEEEecCC
Confidence 35688999999999887655443 4455532 22223332 12223 699999999888888777
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee---eccCCCCCC-ccceEEEec
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSL-SVGQVVWAP 249 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~---~l~~~~~~~-~~~~~~wsp 249 (771)
...+ .|+.........+..+........|.+|....+++..+..|.+||+.++..+ .+.+ .... .+..+.|||
T Consensus 268 ~tvr--iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 268 GTVR--IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSP 344 (456)
T ss_pred CcEE--EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECC
Confidence 7655 5655444555556666666667789999888888878899999999999832 3311 1111 468899999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCc---cccceeec
Q 004141 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESIS---SAFFPRFS 325 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~---~~~~p~~S 325 (771)
+|+. |+... .+..|-.+|+ ..+ .....+.+.. ...++..+
T Consensus 345 ~~~~----ll~~~---------------~d~~~~~w~l-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 345 NGKY----LLSAS---------------LDRTLKLWDL-----------------RSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred CCcE----EEEec---------------CCCeEEEEEc-----------------cCCcceeeecccCCcceeEeccccc
Confidence 9997 76654 2225666666 323 2233333222 45677779
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004141 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~ 405 (771)
++|+.|+-.+.+ ..|+++|..++...+...+.. ...+....|++....+..
T Consensus 389 ~~~~~i~sg~~d-----------~~v~~~~~~s~~~~~~l~~h~------------------~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 389 TGGKLIYSGSED-----------GSVYVWDSSSGGILQRLEGHS------------------KAAVSDLSSHPTENLIAS 439 (456)
T ss_pred CCCCeEEEEeCC-----------ceEEEEeCCccchhhhhcCCC------------------CCceeccccCCCcCeeee
Confidence 999988766655 348999988766544332220 012456678888875544
Q ss_pred Eee-eCCeeEEEEE
Q 004141 406 SSI-WGSSQVIISV 418 (771)
Q Consensus 406 ~~~-~~~~~~l~~~ 418 (771)
.+. .+....+|..
T Consensus 440 ~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 440 SSFEGDGLIRLWKY 453 (456)
T ss_pred cCcCCCceEEEecC
Confidence 332 2344455544
No 186
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.88 E-value=5.2e-07 Score=95.30 Aligned_cols=263 Identities=15% Similarity=0.102 Sum_probs=130.0
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 102 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
....+||||++++. .+++ + .+-.++ ...+..+.+...... .++++||||++|+.....
T Consensus 40 ~~~~~s~Dgr~~yv-~~rd-g--~vsviD~~~~~~v~~i~~G~~~----------~~i~~s~DG~~~~v~n~~------- 98 (369)
T PF02239_consen 40 AGLKFSPDGRYLYV-ANRD-G--TVSVIDLATGKVVATIKVGGNP----------RGIAVSPDGKYVYVANYE------- 98 (369)
T ss_dssp EEEE-TT-SSEEEE-EETT-S--EEEEEETTSSSEEEEEE-SSEE----------EEEEE--TTTEEEEEEEE-------
T ss_pred eEEEecCCCCEEEE-EcCC-C--eEEEEECCcccEEEEEecCCCc----------ceEEEcCCCCEEEEEecC-------
Confidence 44679999999755 4443 2 466666 455555555654444 489999999988665332
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC------CCCccceEEEecCCCCC
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP------KSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~------~~~~~~~~~wspDg~~~ 254 (771)
.+.+.++|.++.++.....+. ....+..+.-||+...
T Consensus 99 ------------------------------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~- 141 (369)
T PF02239_consen 99 ------------------------------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE- 141 (369)
T ss_dssp ------------------------------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-
T ss_pred ------------------------------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-
Confidence 368899998887765431011 1123345566777775
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEE
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
.++.-. ...+||.+|.. +.... ..............|+|||++++-
T Consensus 142 ---fVv~lk--------------d~~~I~vVdy~----------------d~~~~~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 142 ---FVVNLK--------------DTGEIWVVDYS----------------DPKNLKVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp ---EEEEET--------------TTTEEEEEETT----------------TSSCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred ---EEEEEc--------------cCCeEEEEEec----------------cccccceeeecccccccccccCcccceeee
Confidence 555432 33489999972 21111 111122233556799999998765
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCcccee---------eE----EecccccCCCCCc--c----------ccc
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV---------DV----IPVVQCAEGDCFP--G----------LYS 388 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~f~--g----------~~~ 388 (771)
..+. ...|-++|.++++...+..... -+ -.+|.......|. . .+.
T Consensus 189 a~~~----------sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 189 AANG----------SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp EEGG----------GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred cccc----------cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence 4433 2355566655543321100000 00 0001000000000 0 000
Q ss_pred ---------C-CCCCCccccCCCEEEEEee-eCCeeEEEEEECCCCcEE-EecCCCC-CceeeEEeecCCEEEEEEeCCC
Q 004141 389 ---------S-SILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELL-RITPAES-NFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 389 ---------~-~~~~~~~s~Dg~~l~~~~~-~~~~~~l~~~d~~tg~~~-~l~~~~~-~~~~~~~s~dg~~l~~~~~~~~ 455 (771)
. ..-.+..+||+++|++... ......|..+|.++.++. .+....+ ......|++||++++++.-..+
T Consensus 259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 0 1123345899999988732 233567999999887654 3432222 2456789999999999876655
Q ss_pred CCCeEEEEEecc
Q 004141 456 DVPQVKYGYFVD 467 (771)
Q Consensus 456 ~p~~l~~~~~~~ 467 (771)
. .|.++|..+
T Consensus 339 ~--~i~v~D~~T 348 (369)
T PF02239_consen 339 G--AIVVYDAKT 348 (369)
T ss_dssp T--EEEEEETTT
T ss_pred C--EEEEEECCC
Confidence 5 788887543
No 187
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.87 E-value=5.2e-08 Score=104.85 Aligned_cols=211 Identities=15% Similarity=0.175 Sum_probs=121.5
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC---CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc-
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 596 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~- 596 (771)
++-+.|.|... ...+.| ||+++..-...+ ...-..++++|.++||.|+++|.+..+. + ...++..+
T Consensus 201 ~eLiqY~P~te-~v~~~P-LLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~---~-----~r~~~ldDY 270 (560)
T TIGR01839 201 LELIQYKPITE-QQHARP-LLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDK---A-----HREWGLSTY 270 (560)
T ss_pred eEEEEeCCCCC-CcCCCc-EEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCCh---h-----hcCCCHHHH
Confidence 45567777531 122344 666666332211 1122457899999999999999987322 1 11222222
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH----HHhhCCC-ceeEEEecCCccchhhh---------------
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH----LIGQAPD-KFVAAAARNPLCNLALM--------------- 656 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~----~a~~~p~-~~~~~v~~~p~~~~~~~--------------- 656 (771)
++.+.++++.+.+. ...++|.++|+|+||.+++. +++++++ +++.+++....+|+..-
T Consensus 271 v~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~ 348 (560)
T TIGR01839 271 VDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAA 348 (560)
T ss_pred HHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCCCcchhccChHHHHHH
Confidence 34566777777665 34678999999999999997 6777785 79998877766664210
Q ss_pred ----hcCCCCCcchhhhhccC---------CCCccC-C-CCCC-------------------hhhHHHHhhcCcc-----
Q 004141 657 ----VGTTDIPDWCYVESYGS---------KGKDSF-T-ESPS-------------------VEDLTRFHSKSPI----- 697 (771)
Q Consensus 657 ----~~~~~~~~~~~~~~~~~---------~~~~~~-~-~~~~-------------------~~~~~~~~~~sp~----- 697 (771)
.....++.+.+...|.. .....+ . ..+. .+... ++..+.+
T Consensus 349 e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg~~~~e~l~-ly~~N~L~~pG~ 427 (560)
T TIGR01839 349 KRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLPAAFHGDLLD-MFKSNPLTRPDA 427 (560)
T ss_pred HHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccchHHHHHHHHH-HHhcCCCCCCCC
Confidence 00001111100000000 000000 0 0000 01111 2222222
Q ss_pred -------cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004141 698 -------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 698 -------~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
-.+.+|++|+|++.|+.|-++|++.+..+.+.+. .+++++..+ +||.
T Consensus 428 l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~g---s~~~fvl~~-gGHI 481 (560)
T TIGR01839 428 LEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLLG---GKRRFVLSN-SGHI 481 (560)
T ss_pred EEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHcC---CCeEEEecC-CCcc
Confidence 1367889999999999999999999988877663 358888885 5884
No 188
>PTZ00421 coronin; Provisional
Probab=98.85 E-value=4.8e-07 Score=98.95 Aligned_cols=182 Identities=13% Similarity=0.071 Sum_probs=103.4
Q ss_pred ceEEEEEccCCc--------eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004141 218 PSLFVININSGE--------VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 218 ~~l~v~d~~~~~--------~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
..|.+||+.++. ...+ ......+..+.|+|++.. +++++- .+..|.++|+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L--~gH~~~V~~l~f~P~~~~----iLaSgs--------------~DgtVrIWDl-- 155 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHL--QGHTKKVGIVSFHPSAMN----VLASAG--------------ADMVVNVWDV-- 155 (493)
T ss_pred CEEEEEecCCCccccccCcceEEe--cCCCCcEEEEEeCcCCCC----EEEEEe--------------CCCEEEEEEC--
Confidence 567788876542 2233 233456788999999865 655541 2336888887
Q ss_pred ccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004141 290 YKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
.+++ ...+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++........
T Consensus 156 ---------------~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D-----------g~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 156 ---------------ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD-----------KKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred ---------------CCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC-----------CEEEEEECCCCcEEEEEecC
Confidence 4444 34555566678999999999988776654 35889998775531100000
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCc--EEEecCCC-CCceeeEEeecC
Q 004141 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGE--LLRITPAE-SNFSWSLLTLDG 444 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~d~~tg~--~~~l~~~~-~~~~~~~~s~dg 444 (771)
. . .......|.+++..|+..... .....+..+|+.+.. ...+.... .....+.|++++
T Consensus 210 ----------~-~-------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 210 ----------A-S-------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT 271 (493)
T ss_pred ----------C-C-------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC
Confidence 0 0 011245688888766543321 122345555765432 22222121 223445688888
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccc
Q 004141 445 DNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 445 ~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+.++....+. ..|.+.++.++
T Consensus 272 ~~L~lggkgD---g~Iriwdl~~~ 292 (493)
T PTZ00421 272 NLLYIGSKGE---GNIRCFELMNE 292 (493)
T ss_pred CEEEEEEeCC---CeEEEEEeeCC
Confidence 8776654322 34666666543
No 189
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.85 E-value=4.7e-07 Score=84.29 Aligned_cols=252 Identities=15% Similarity=0.117 Sum_probs=149.3
Q ss_pred eEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC--CccCCCCCC
Q 004141 125 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS--DKDCNSWKG 200 (771)
Q Consensus 125 ~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 200 (771)
+.+.+| ..|...+.++.+.. ....++.+||++.||-.+.... ..++.......+. ...+..=..
T Consensus 20 hTIRfWqa~tG~C~rTiqh~ds---------qVNrLeiTpdk~~LAaa~~qhv---RlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDS---------QVNRLEITPDKKDLAAAGNQHV---RLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceeeeeehhcCeEEEEEecCcc---------ceeeEEEcCCcchhhhccCCee---EEEEccCCCCCceeEEeccCCceE
Confidence 466777 45666666654332 2369999999999988654331 1222111111111 111111112
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004141 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
.+-|..|..--+++..+..+-+||+..-...++ ......+..+...|+... |+... ...
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~--~~~~spVn~vvlhpnQte----Lis~d---------------qsg 146 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN--YQHNSPVNTVVLHPNQTE----LISGD---------------QSG 146 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchh--ccCCCCcceEEecCCcce----EEeec---------------CCC
Confidence 344666665667777889999999988777776 555567888999998765 55432 445
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCC--cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 281 ALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+|+++|+ ... ....+.+....+.+....|||++|+-.-+. ...|+|++-+
T Consensus 147 ~irvWDl-----------------~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk-----------G~cyvW~l~~ 198 (311)
T KOG0315|consen 147 NIRVWDL-----------------GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK-----------GNCYVWRLLN 198 (311)
T ss_pred cEEEEEc-----------------cCCccccccCCCCCcceeeEEEcCCCcEEEEecCC-----------ccEEEEEccC
Confidence 8999998 332 233344455568999999999998866554 2488888876
Q ss_pred CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC-cEEE-ecCCCCCce
Q 004141 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG-ELLR-ITPAESNFS 436 (771)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg-~~~~-l~~~~~~~~ 436 (771)
+.... .+.++.+ |+ .....+....+|||+|+|+- .+.+....||..+ +- +++. ++....-.-
T Consensus 199 ~~~~s------~l~P~~k------~~-ah~~~il~C~lSPd~k~lat-~ssdktv~iwn~~--~~~kle~~l~gh~rWvW 262 (311)
T KOG0315|consen 199 HQTAS------ELEPVHK------FQ-AHNGHILRCLLSPDVKYLAT-CSSDKTVKIWNTD--DFFKLELVLTGHQRWVW 262 (311)
T ss_pred CCccc------cceEhhh------ee-cccceEEEEEECCCCcEEEe-ecCCceEEEEecC--CceeeEEEeecCCceEE
Confidence 43311 1222221 11 11122345668999997754 4445556666554 33 3333 333333344
Q ss_pred eeEEeecCCEEEEEEeC
Q 004141 437 WSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 437 ~~~~s~dg~~l~~~~~~ 453 (771)
...||.||.+|+...++
T Consensus 263 dc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 263 DCAFSADGEYLVTASSD 279 (311)
T ss_pred eeeeccCccEEEecCCC
Confidence 46899999988765544
No 190
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.85 E-value=6.4e-08 Score=99.03 Aligned_cols=203 Identities=17% Similarity=0.254 Sum_probs=118.9
Q ss_pred EEEEe-cCCCCCCCCCcEEEEEcCCCCCCCCCcch----HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004141 523 AIFVS-SSHKKDCSCDPLIVVLHGGPHSVSLSSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 523 ~~~~~-P~~~~~~~~~p~vv~~HGg~~~~~~~~~~----~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.|++. |.... .+..|+||++|||++........ ..+..+.. ..++++.||.....- ..+......+
T Consensus 108 ~Wlvk~P~~~~-pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~-------~~~~~yPtQL 178 (374)
T PF10340_consen 108 YWLVKAPNRFK-PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSD-------EHGHKYPTQL 178 (374)
T ss_pred EEEEeCCcccC-CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccc-------cCCCcCchHH
Confidence 57777 65432 23459999999998764332111 11112223 569999999865300 0122334558
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-----CCceeEEEecCCccchhhhhcCC-------CCCcc
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTT-------DIPDW 665 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~p~~~~~~~~~~~-------~~~~~ 665 (771)
.++.+..++|++.. ..++|.|+|.|+||.+++.++..- ....+.+|+++|.+++....... ...+.
T Consensus 179 ~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n~~~D~ 256 (374)
T PF10340_consen 179 RQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDNEKRDM 256 (374)
T ss_pred HHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccccccccc
Confidence 89999999999542 357899999999999999876521 12468999999998875211100 00000
Q ss_pred hh---hhhccCCCCccCCCC----------C--Ch-h--hHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHH
Q 004141 666 CY---VESYGSKGKDSFTES----------P--SV-E--DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727 (771)
Q Consensus 666 ~~---~~~~~~~~~~~~~~~----------~--~~-~--~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~ 727 (771)
.. ...++. .|.+. + .. . +.+.|... + -+.-++++.|+++-+. .+..++.
T Consensus 257 l~~~~~~~~~~----~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I-----~--~~~~vfVi~Ge~Evfr--ddI~~~~ 323 (374)
T PF10340_consen 257 LSYKGLSMFGD----AYIGNNDPENDLNSLPFVNIEYNFDAEDWKDI-----L--KKYSVFVIYGEDEVFR--DDILEWA 323 (374)
T ss_pred cchhhHHHHHH----hhccccccccccccCCccCcccCCChhHHHHh-----c--cCCcEEEEECCccccH--HHHHHHH
Confidence 00 000100 01110 0 00 0 01111111 1 1257999999999777 7889999
Q ss_pred HHHHhCCC-----CEEEEEeCCCCccC
Q 004141 728 RALREKGV-----ETKVIVFPNDVHGI 749 (771)
Q Consensus 728 ~~l~~~g~-----~~~~~~~~~~~H~~ 749 (771)
+.+...+. ..++.+-+++.|.-
T Consensus 324 ~~~~~~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 324 KKLNDVKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred HHHhhcCccccCCcceEEEecCCcccc
Confidence 99986543 36778888888954
No 191
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.85 E-value=3.3e-09 Score=120.38 Aligned_cols=128 Identities=22% Similarity=0.224 Sum_probs=85.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--cchHHHHHHHHCCcEEEEECCCC-CCCCChhhhhcCCCCccccch
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~Vv~~d~rG-~~~~g~~~~~~~~~~~~~~~~ 597 (771)
|..-+|.|.......+.|++|++|||++..+.. ........++..+++||.++||- .-||-.......+ .+..-+
T Consensus 109 L~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~--~gN~Gl 186 (535)
T PF00135_consen 109 LYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAP--SGNYGL 186 (535)
T ss_dssp -EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSH--BSTHHH
T ss_pred HHHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccC--chhhhh
Confidence 455688998765555799999999998876655 33444566788999999999993 1111110000001 133448
Q ss_pred hhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCc
Q 004141 598 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPL 650 (771)
Q Consensus 598 ~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~ 650 (771)
.|...|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|+.+|+.++.
T Consensus 187 ~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 187 LDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 8999999999886 336999999999999999999887652 3589999999884
No 192
>PTZ00421 coronin; Provisional
Probab=98.85 E-value=9.8e-07 Score=96.57 Aligned_cols=214 Identities=12% Similarity=0.063 Sum_probs=120.2
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEecCCcc----eEEEecCCcccccccCCCcccceeecCCCC-eEEEEec
Q 004141 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWSQSQL----EKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~ 172 (771)
+.+...+||| |++.||..+... .-.+|.+..++.. ..+..+. +... .+..+.|+|++. .|+..+
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~Dg--tIkIWdi~~~~~~~~~~~~l~~L~-gH~~------~V~~l~f~P~~~~iLaSgs- 145 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDG--TIMGWGIPEEGLTQNISDPIVHLQ-GHTK------KVGIVSFHPSAMNVLASAG- 145 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCC--EEEEEecCCCccccccCcceEEec-CCCC------cEEEEEeCcCCCCEEEEEe-
Confidence 5688999999 888887765533 2223333222211 1111111 1111 226899999975 444432
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
.+..|.+||+.+++..... ......+..+.|+|||+
T Consensus 146 -------------------------------------------~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 146 -------------------------------------------ADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGS 181 (493)
T ss_pred -------------------------------------------CCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCC
Confidence 2367999999988755441 22344688999999998
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCcc-ccceeecCCCCE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISS-AFFPRFSPDGKF 330 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~-~~~p~~SpDG~~ 330 (771)
. |+..+ .+..|.++|+ .+++ ...+..+.+. .....|+|++..
T Consensus 182 l----Latgs---------------~Dg~IrIwD~-----------------rsg~~v~tl~~H~~~~~~~~~w~~~~~~ 225 (493)
T PTZ00421 182 L----LCTTS---------------KDKKLNIIDP-----------------RDGTIVSSVEAHASAKSQRCLWAKRKDL 225 (493)
T ss_pred E----EEEec---------------CCCEEEEEEC-----------------CCCcEEEEEecCCCCcceEEEEcCCCCe
Confidence 6 66655 3347888887 4443 3344433332 346789999988
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
|+...... ....+|.+||+..... .+... . . ... .....+.|++|++.|+.....+
T Consensus 226 ivt~G~s~-------s~Dr~VklWDlr~~~~-p~~~~-----~---~---d~~-----~~~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 226 IITLGCSK-------SQQRQIMLWDTRKMAS-PYSTV-----D---L---DQS-----SALFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EEEEecCC-------CCCCeEEEEeCCCCCC-ceeEe-----c---c---CCC-----CceEEEEEcCCCCEEEEEEeCC
Confidence 77555332 1235688999865332 11000 0 0 000 0122356899999776554445
Q ss_pred CeeEEEEEECCCCcEEEe
Q 004141 411 SSQVIISVNVSSGELLRI 428 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l 428 (771)
+...+| ++.++++...
T Consensus 282 g~Iriw--dl~~~~~~~~ 297 (493)
T PTZ00421 282 GNIRCF--ELMNERLTFC 297 (493)
T ss_pred CeEEEE--EeeCCceEEE
Confidence 544455 5556665443
No 193
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=8e-08 Score=96.90 Aligned_cols=241 Identities=14% Similarity=0.166 Sum_probs=143.2
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
.|+|..++|+.. .+++++.||+.+. +..++. .+-..+........+||||++||+..+. ..|+++
T Consensus 266 ~p~G~~~i~~s~--------rrky~ysyDle~a--k~~k~~-~~~g~e~~~~e~FeVShd~~fia~~G~~----G~I~lL 330 (514)
T KOG2055|consen 266 APNGHSVIFTSG--------RRKYLYSYDLETA--KVTKLK-PPYGVEEKSMERFEVSHDSNFIAIAGNN----GHIHLL 330 (514)
T ss_pred cCCCceEEEecc--------cceEEEEeecccc--cccccc-CCCCcccchhheeEecCCCCeEEEcccC----ceEEee
Confidence 358886666653 4568999998433 333331 1111122346678889999999987443 357766
Q ss_pred e-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004141 130 W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 130 ~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
. ..++........ |.+ ..+.||.||+.|+.+.
T Consensus 331 hakT~eli~s~Kie----G~v------~~~~fsSdsk~l~~~~------------------------------------- 363 (514)
T KOG2055|consen 331 HAKTKELITSFKIE----GVV------SDFTFSSDSKELLASG------------------------------------- 363 (514)
T ss_pred hhhhhhhhheeeec----cEE------eeEEEecCCcEEEEEc-------------------------------------
Confidence 6 444433333333 333 7999999998887652
Q ss_pred CcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004141 209 GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
+..++|+||+....+...---.+.....+++.|++|.+ ++..+..+ +. .||..+-.
T Consensus 364 -------~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y----lA~GS~~G------iV-------NIYd~~s~ 419 (514)
T KOG2055|consen 364 -------GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY----LATGSDSG------IV-------NIYDGNSC 419 (514)
T ss_pred -------CCceEEEEecCCcceEEEEeecCccceeeeeecCCCce----EEeccCcc------eE-------EEeccchh
Confidence 23689999998876655410233445567888999998 88766321 11 35544321
Q ss_pred cccchhhhhhhhcCCCCCCcceec---CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004141 289 LYKSEASELELKESSSEDLPVVNL---TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~l---t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
. .++.++++ ..--..+.+..|+||++.||-.++.. ...|.++-+.+-...
T Consensus 420 ~---------------~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~---------knalrLVHvPS~TVF--- 472 (514)
T KOG2055|consen 420 F---------------ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK---------KNALRLVHVPSCTVF--- 472 (514)
T ss_pred h---------------ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc---------ccceEEEeccceeee---
Confidence 1 23333333 23334588999999999999888764 234555554442210
Q ss_pred cceeeEEecccccCCCCCccc--ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 366 EKIVDVIPVVQCAEGDCFPGL--YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~--~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
..||.. ....+..++|||.|.++.+ .+..++..||.+.
T Consensus 473 ---------------sNfP~~n~~vg~vtc~aFSP~sG~lAv-GNe~grv~l~kL~ 512 (514)
T KOG2055|consen 473 ---------------SNFPTSNTKVGHVTCMAFSPNSGYLAV-GNEAGRVHLFKLH 512 (514)
T ss_pred ---------------ccCCCCCCcccceEEEEecCCCceEEe-ecCCCceeeEeec
Confidence 011110 0012457889999986654 4567788888764
No 194
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.84 E-value=4.5e-08 Score=102.09 Aligned_cols=230 Identities=18% Similarity=0.247 Sum_probs=143.5
Q ss_pred CCCcEEEEEcCCCCCCCCC---c-chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC--------CccccchhhHHH
Q 004141 535 SCDPLIVVLHGGPHSVSLS---S-YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--------KVGSQDVNDVLT 602 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~---~-~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~--------~~~~~~~~D~~~ 602 (771)
+++|+|++.||--.++... . -...+-.|+++||.|.+-|.|| ..|++......+. .+-+-...|+-+
T Consensus 71 ~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA 149 (403)
T KOG2624|consen 71 KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPA 149 (403)
T ss_pred CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHH
Confidence 7899999999954433211 1 1224456799999999999999 4455543222211 111223679999
Q ss_pred HHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC---ceeEEEecCCccchhh---------------------hhc
Q 004141 603 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLAL---------------------MVG 658 (771)
Q Consensus 603 ~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~p~~~~~~---------------------~~~ 658 (771)
.|+++.+.- ..+++..+|||.|+.....++...|+ +++..++.+|+..+.. +++
T Consensus 150 ~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg 227 (403)
T KOG2624|consen 150 MIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFG 227 (403)
T ss_pred HHHHHHHhc--cccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcC
Confidence 999998873 56899999999999999988887765 6888899998773320 000
Q ss_pred CCCC-Cc-c---------hh-------------hhhccCCC-----------------------------------CccC
Q 004141 659 TTDI-PD-W---------CY-------------VESYGSKG-----------------------------------KDSF 679 (771)
Q Consensus 659 ~~~~-~~-~---------~~-------------~~~~~~~~-----------------------------------~~~~ 679 (771)
.... +. + |. ....+... .+.|
T Consensus 228 ~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~y 307 (403)
T KOG2624|consen 228 RKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKY 307 (403)
T ss_pred CccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCcccc
Confidence 0000 00 0 00 00000000 0000
Q ss_pred CCCCChhhHHHHhh-cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc--CCCCCChH
Q 004141 680 TESPSVEDLTRFHS-KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERPQSDF 756 (771)
Q Consensus 680 ~~~~~~~~~~~~~~-~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~--~~~~~~~~ 756 (771)
.... ..+...|.+ ..|...+.++++|+.+..|..|.++.+++...+...+....+ ...+.+++-.|. +.......
T Consensus 308 D~G~-~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~ 385 (403)
T KOG2624|consen 308 DYGS-KRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKE 385 (403)
T ss_pred CCCc-cccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHH
Confidence 0000 012222222 234566788899999999999999999999988887776544 333337777885 33455677
Q ss_pred HHHHHHHHHHHHh
Q 004141 757 ESFLNIGLWFKKY 769 (771)
Q Consensus 757 ~~~~~i~~fl~~~ 769 (771)
+++..|++.++++
T Consensus 386 ~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 386 EVYDPVIERLRLF 398 (403)
T ss_pred HHHHHHHHHHHhh
Confidence 8899999988765
No 195
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.84 E-value=5.8e-08 Score=90.22 Aligned_cols=168 Identities=20% Similarity=0.238 Sum_probs=96.0
Q ss_pred EEEEcCCCCCCCCCcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeE
Q 004141 540 IVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 618 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~-~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 618 (771)
|+++||-.++.. ..|.... +.|... +.|-.++... .+.++....++..+.. + .+.+
T Consensus 1 v~IvhG~~~s~~-~HW~~wl~~~l~~~-~~V~~~~~~~------------------P~~~~W~~~l~~~i~~--~-~~~~ 57 (171)
T PF06821_consen 1 VLIVHGYGGSPP-DHWQPWLERQLENS-VRVEQPDWDN------------------PDLDEWVQALDQAIDA--I-DEPT 57 (171)
T ss_dssp EEEE--TTSSTT-TSTHHHHHHHHTTS-EEEEEC--TS--------------------HHHHHHHHHHCCHC----TTTE
T ss_pred CEEeCCCCCCCc-cHHHHHHHHhCCCC-eEEeccccCC------------------CCHHHHHHHHHHHHhh--c-CCCe
Confidence 678899665543 4565544 455444 7776666411 1234444444433332 3 3469
Q ss_pred EEEEcChhHHHHHHHH-hhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcc
Q 004141 619 TVVGGSHGGFLTTHLI-GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 697 (771)
Q Consensus 619 ~l~G~S~GG~~a~~~a-~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 697 (771)
.++|||.|+..++.++ ......++++++.+|....... ...+ . ...+.. .|
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~---~~~~------~-----~~~f~~-------------~p- 109 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPE---PFPP------E-----LDGFTP-------------LP- 109 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHH---CCTC------G-----GCCCTT-------------SH-
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccccc---chhh------h-----cccccc-------------Cc-
Confidence 9999999999999999 6677899999999997431000 0000 0 000000 01
Q ss_pred cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 698 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 698 ~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
...+..|.+++.+++|+.||++.+.++.+++. .+++.++++||.... ....-+..+++.|+
T Consensus 110 --~~~l~~~~~viaS~nDp~vp~~~a~~~A~~l~-----a~~~~~~~~GHf~~~--~G~~~~p~~~~~l~ 170 (171)
T PF06821_consen 110 --RDPLPFPSIVIASDNDPYVPFERAQRLAQRLG-----AELIILGGGGHFNAA--SGFGPWPEGLDLLQ 170 (171)
T ss_dssp --CCHHHCCEEEEEETTBSSS-HHHHHHHHHHHT------EEEEETS-TTSSGG--GTHSS-HHHHHHHH
T ss_pred --ccccCCCeEEEEcCCCCccCHHHHHHHHHHcC-----CCeEECCCCCCcccc--cCCCchHHHHHHhc
Confidence 11233566999999999999999999999985 589999999996532 11233455555554
No 196
>COG0627 Predicted esterase [General function prediction only]
Probab=98.83 E-value=3.4e-08 Score=100.25 Aligned_cols=223 Identities=17% Similarity=0.147 Sum_probs=129.7
Q ss_pred CCCCCcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECCC--------------CC-CCCChhhhhcCCCCccccc
Q 004141 533 DCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYR--------------GS-LGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~Vv~~d~r--------------G~-~~~g~~~~~~~~~~~~~~~ 596 (771)
.+++.|+++++||-..... .......-+.....|.+++++|-. |. .++-.++.+.. ...+...
T Consensus 50 m~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~-~~~~~~q 128 (316)
T COG0627 50 MGRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPP-WASGPYQ 128 (316)
T ss_pred cCCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCc-cccCccc
Confidence 4577899999999443310 111222333456778888887532 10 11111111111 0111123
Q ss_pred hhhHH-HHHH-HHHHcCCCCC--CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC---CC--Ccchh
Q 004141 597 VNDVL-TAID-HVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DI--PDWCY 667 (771)
Q Consensus 597 ~~D~~-~~i~-~l~~~~~~d~--~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~---~~--~~~~~ 667 (771)
.++++ .-+- .+.+....+. ++.+|+||||||+-|+.+|.++|++|+.+...+|+++........ .. .....
T Consensus 129 ~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~ 208 (316)
T COG0627 129 WETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAF 208 (316)
T ss_pred hhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccH
Confidence 34433 2222 3333333444 389999999999999999999999999999999998765332222 00 01111
Q ss_pred hhhccCCCCccCCCCCChhhHHHHhhcCcccccCC--------------CCCcEEEEeeCCCCccC--cHHHHHHHHHHH
Q 004141 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK--------------VKTPTIFLLGAQDLRVP--VSNGLQYARALR 731 (771)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--------------i~~P~lii~G~~D~~vp--~~~~~~~~~~l~ 731 (771)
...++. .. ...+.+.+|...+.+ ...++++-+|..|.+.. ....+.+.+++.
T Consensus 209 ~~~~G~---------~~---~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~ 276 (316)
T COG0627 209 NAMLGP---------DS---DPAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALR 276 (316)
T ss_pred HHhcCC---------Cc---cccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHH
Confidence 111221 10 012222333322221 44678888999998874 334788999999
Q ss_pred hCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+.|.+..+...++..|.... ....+...+.|+.+.|+
T Consensus 277 ~~g~~~~~~~~~~G~Hsw~~---w~~~l~~~~~~~a~~l~ 313 (316)
T COG0627 277 AAGIPNGVRDQPGGDHSWYF---WASQLADHLPWLAGALG 313 (316)
T ss_pred hcCCCceeeeCCCCCcCHHH---HHHHHHHHHHHHHHHhc
Confidence 99999998888888997642 23567788888877653
No 197
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.83 E-value=1.2e-07 Score=95.14 Aligned_cols=229 Identities=17% Similarity=0.162 Sum_probs=127.4
Q ss_pred CCCCcEEEEEcCCCCCCCCCcc-----hHHHHHH-------HHCCcEEEEECCCCCC-CC-ChhhhhcCC----CCcccc
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSY-----SKSLAFL-------SSVGYSLLIVNYRGSL-GF-GEEALQSLP----GKVGSQ 595 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~-----~~~~~~l-------a~~G~~Vv~~d~rG~~-~~-g~~~~~~~~----~~~~~~ 595 (771)
..+..+|+++|+-.++...... ...++.| --..|-||++|.-|+. |. |.+..+..- ..+...
T Consensus 48 ~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ 127 (368)
T COG2021 48 AEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVI 127 (368)
T ss_pred ccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcc
Confidence 3566899999984432211110 0123333 3344999999998764 21 222222110 122334
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHhhCCCceeEEEecCCccchh---------hhhcCCCCCcc
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDW 665 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~---------~~~~~~~~~~~ 665 (771)
.+.|...+-+.|++.-.| +++. ++|.||||+.++..+..+|+++..+|.++...... .......-|+|
T Consensus 128 ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~ 205 (368)
T COG2021 128 TIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPDW 205 (368)
T ss_pred cHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCCc
Confidence 578888888888777444 5555 99999999999999999999988777666533210 00011111222
Q ss_pred h------------------------------hhhhccCCCCccCCCC-CChhhHHHHh----------------------
Q 004141 666 C------------------------------YVESYGSKGKDSFTES-PSVEDLTRFH---------------------- 692 (771)
Q Consensus 666 ~------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------------- 692 (771)
. +.+.++......-... ......+.|.
T Consensus 206 n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~a 285 (368)
T COG2021 206 NGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRA 285 (368)
T ss_pred cCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 0 0111111000000000 0000111111
Q ss_pred --hcCccc-------ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe-CCCCccCCCCCChHHHHHHH
Q 004141 693 --SKSPIS-------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF-PNDVHGIERPQSDFESFLNI 762 (771)
Q Consensus 693 --~~sp~~-------~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~-~~~~H~~~~~~~~~~~~~~i 762 (771)
..++.. -+.++++|+|++.=+.|.+.|+++.+++.+.|+..+. ++++ ...||.-...+.. .+...|
T Consensus 286 ld~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~---~~~i~S~~GHDaFL~e~~-~~~~~i 361 (368)
T COG2021 286 LDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGA---LREIDSPYGHDAFLVESE-AVGPLI 361 (368)
T ss_pred HHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCc---eEEecCCCCchhhhcchh-hhhHHH
Confidence 112222 2677899999999999999999999999999998765 4333 3458864433322 344667
Q ss_pred HHHHHH
Q 004141 763 GLWFKK 768 (771)
Q Consensus 763 ~~fl~~ 768 (771)
..||+.
T Consensus 362 ~~fL~~ 367 (368)
T COG2021 362 RKFLAL 367 (368)
T ss_pred HHHhhc
Confidence 777653
No 198
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.83 E-value=7.8e-07 Score=95.94 Aligned_cols=198 Identities=13% Similarity=0.065 Sum_probs=133.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
+.+...+||||-++|+--+++. ...+|.-.....++.-. +... +...+.|+|-|-++|..+.+.+.+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~-----svRLWsl~t~s~~V~y~-GH~~------PVwdV~F~P~GyYFatas~D~tAr- 518 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDS-----SVRLWSLDTWSCLVIYK-GHLA------PVWDVQFAPRGYYFATASHDQTAR- 518 (707)
T ss_pred CceeeeeecccccceeeccCCc-----ceeeeecccceeEEEec-CCCc------ceeeEEecCCceEEEecCCCceee-
Confidence 5678889999999997665543 34556222222222221 2111 125788999997777776666543
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.|........+.+..+..-.+-+.|-|+-....++..+..+.+||+.+|...++- +.+...+..+++||+|++ |
T Consensus 519 -LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~----L 592 (707)
T KOG0263|consen 519 -LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRY----L 592 (707)
T ss_pred -eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCce----E
Confidence 5654444444444455454555667777666667778889999999999877773 345567899999999998 8
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+-.+ ....|-+||+ .++ ....+-.+.+.+.+..||.||..||..+.+
T Consensus 593 aSg~---------------ed~~I~iWDl-----------------~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 593 ASGD---------------EDGLIKIWDL-----------------ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred eecc---------------cCCcEEEEEc-----------------CCCcchhhhhcccCceeEEEEecCCCEEEecCCC
Confidence 8765 2336888888 554 456677778889999999999988866544
Q ss_pred CCCCCCCccccccceeeecCC
Q 004141 338 SSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+.|.+||+..
T Consensus 641 -----------nsV~lWD~~~ 650 (707)
T KOG0263|consen 641 -----------NSVRLWDLTK 650 (707)
T ss_pred -----------CeEEEEEchh
Confidence 4577777644
No 199
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.82 E-value=1.4e-07 Score=94.93 Aligned_cols=234 Identities=14% Similarity=0.105 Sum_probs=129.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh-hcCCC---------
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-QSLPG--------- 590 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~-~~~~~--------- 590 (771)
.+..++.|+.. ..+.+|++|.+.|.+...+.......+..|++.|+..+.+..+- ||..-. +....
T Consensus 77 a~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Py---yg~RkP~~Q~~s~l~~VsDl~ 152 (348)
T PF09752_consen 77 ARFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPY---YGQRKPKDQRRSSLRNVSDLF 152 (348)
T ss_pred eEEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEeccc---ccccChhHhhcccccchhHHH
Confidence 34456678754 34568999999996654333333344677888899999988554 433211 11100
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh-hc-CCCCCcchhh
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-VG-TTDIPDWCYV 668 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~-~~-~~~~~~~~~~ 668 (771)
..+...+.++...++|+.+++ ..+++|.|.||||.+|.++++..|..+..+-+.++......+ .+ .....+|...
T Consensus 153 ~~g~~~i~E~~~Ll~Wl~~~G---~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W~~L 229 (348)
T PF09752_consen 153 VMGRATILESRALLHWLEREG---YGPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINWDAL 229 (348)
T ss_pred HHHhHHHHHHHHHHHHHHhcC---CCceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCHHHH
Confidence 112334667778888998885 358999999999999999999998876655555543321111 11 1122234322
Q ss_pred hhc-cCCC--------CccCC---------CCCChhhHH-HHhhcCcccccCCCCC-----cEEEEeeCCCCccCcHHHH
Q 004141 669 ESY-GSKG--------KDSFT---------ESPSVEDLT-RFHSKSPISHISKVKT-----PTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 669 ~~~-~~~~--------~~~~~---------~~~~~~~~~-~~~~~sp~~~~~~i~~-----P~lii~G~~D~~vp~~~~~ 724 (771)
+.. .... ..... .....+... ....+.-..++.+..+ .+.++.+++|..||.++..
T Consensus 230 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~~v~ 309 (348)
T PF09752_consen 230 EKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRHGVL 309 (348)
T ss_pred HHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechhhcc
Confidence 111 0000 00000 000011111 1111222233444333 3888899999999987766
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
.+.+... .+++.++++ ||.-...-+...+.+.|.+=|
T Consensus 310 ~Lq~~WP----GsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf 346 (348)
T PF09752_consen 310 SLQEIWP----GSEVRYLPG-GHVSAYLLHQEAFRQAIYDAF 346 (348)
T ss_pred hHHHhCC----CCeEEEecC-CcEEEeeechHHHHHHHHHHh
Confidence 6555443 367778876 996443333334555666544
No 200
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.82 E-value=9.1e-08 Score=91.86 Aligned_cols=248 Identities=13% Similarity=0.165 Sum_probs=149.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+....|||||++|+..+-++ ++++| ..|+.++-..-.. ......-|....+++||.|.+.||..+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDG-----FiEVWny~~GKlrKDLkYQA-qd~fMMmd~aVlci~FSRDsEMlAsGs------ 282 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDG-----FIEVWNYTTGKLRKDLKYQA-QDNFMMMDDAVLCISFSRDSEMLASGS------ 282 (508)
T ss_pred chhheeeCCCCceEeeccccc-----eeeeehhccchhhhhhhhhh-hcceeecccceEEEeecccHHHhhccC------
Confidence 355679999999998755544 88899 4565544322110 000111233446899999998887743
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.+..|-+|.+.+|...+--.-....++..+.||.|+..
T Consensus 283 --------------------------------------qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq---- 320 (508)
T KOG0275|consen 283 --------------------------------------QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ---- 320 (508)
T ss_pred --------------------------------------cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcch----
Confidence 33578889888887543311234557889999999999
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+-.++.. .+.+.-+ .+|+ .+.+..+...+....|++||..|+-.+.
T Consensus 321 iLS~sfD~---------------tvRiHGl-----------------KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 321 ILSASFDQ---------------TVRIHGL-----------------KSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred hhcccccc---------------eEEEecc-----------------ccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 88776321 3334444 4454 4556666777899999999999998887
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC-CEEEEEeeeCCeeEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG-CTMLLSSIWGSSQVI 415 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg-~~l~~~~~~~~~~~l 415 (771)
+. .+.+|+.++++-........ .+. .+.++-.-|.+ ..+++ .+ ....+
T Consensus 369 Dg-----------tvkvW~~KtteC~~Tfk~~~-----------~d~------~vnsv~~~PKnpeh~iV-CN--rsntv 417 (508)
T KOG0275|consen 369 DG-----------TVKVWHGKTTECLSTFKPLG-----------TDY------PVNSVILLPKNPEHFIV-CN--RSNTV 417 (508)
T ss_pred Cc-----------cEEEecCcchhhhhhccCCC-----------Ccc------cceeEEEcCCCCceEEE-Ec--CCCeE
Confidence 64 37778877765421110000 000 11111222222 22222 11 23568
Q ss_pred EEEECCCCcEEEecCCC---CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 416 ISVNVSSGELLRITPAE---SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 416 ~~~d~~tg~~~~l~~~~---~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
|.+++.+.-++..+.+. +++-...+||.|.++|+..++ ..+|.+...++
T Consensus 418 ~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED----~vlYCF~~~sG 469 (508)
T KOG0275|consen 418 YIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED----GVLYCFSVLSG 469 (508)
T ss_pred EEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccC----cEEEEEEeecC
Confidence 99998654455555432 355567889999999998764 34666655444
No 201
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.80 E-value=7.9e-08 Score=95.48 Aligned_cols=274 Identities=11% Similarity=0.019 Sum_probs=151.3
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.|++|+++|-++. ..+.-+|.+.- +.. ..|- ..+......+....||||.++|+--...+ ...
T Consensus 232 FS~nGkyLAsaSk-------D~Taiiw~v~~--d~~--~kl~-~tlvgh~~~V~yi~wSPDdryLlaCg~~e-----~~~ 294 (519)
T KOG0293|consen 232 FSHNGKYLASASK-------DSTAIIWIVVY--DVH--FKLK-KTLVGHSQPVSYIMWSPDDRYLLACGFDE-----VLS 294 (519)
T ss_pred EcCCCeeEeeccC-------CceEEEEEEec--Ccc--eeee-eeeecccCceEEEEECCCCCeEEecCchH-----hee
Confidence 3788888887543 23456666443 221 1111 11111225688999999999997654333 455
Q ss_pred Ee--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC-Cccccc
Q 004141 129 LW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK-GQGDWE 205 (771)
Q Consensus 129 ~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 205 (771)
+| +.|..++......+. ...+.+|-|||.+++..+.+...- .| ..++.....+......+ ......
T Consensus 295 lwDv~tgd~~~~y~~~~~~--------S~~sc~W~pDg~~~V~Gs~dr~i~--~w-dlDgn~~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGF--------SVSSCAWCPDGFRFVTGSPDRTII--MW-DLDGNILGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred eccCCcchhhhhcccCcCC--------CcceeEEccCCceeEecCCCCcEE--Ee-cCCcchhhcccccccceeEEEEEc
Confidence 66 445544443322111 115788999999988766553211 11 11111111222111111 123344
Q ss_pred CCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004141 206 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
.|+...+.......|.+++.++...+.+ +..+..+.++..|-||+. +.+.- .+..|..+
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~dr~l--ise~~~its~~iS~d~k~-----~LvnL--------------~~qei~LW 422 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARVDRGL--ISEEQPITSFSISKDGKL-----ALVNL--------------QDQEIHLW 422 (519)
T ss_pred CCCcEEEEEecccceeeechhhhhhhcc--ccccCceeEEEEcCCCcE-----EEEEc--------------ccCeeEEe
Confidence 4544444444567888888887766656 566678899999999995 43331 22368888
Q ss_pred ecccccchhhhhhhhcCCCCCCc-ceecCCCCc---cccceeec-CCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 286 RVSLYKSEASELELKESSSEDLP-VVNLTESIS---SAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~---~~~~p~~S-pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
|+ +... +++-..+.. .+++ .|- -|.+.|+-.+. ..++|+|+..+|.
T Consensus 423 Dl-----------------~e~~lv~kY~Ghkq~~fiIrS-CFgg~~~~fiaSGSE-----------D~kvyIWhr~sgk 473 (519)
T KOG0293|consen 423 DL-----------------EENKLVRKYFGHKQGHFIIRS-CFGGGNDKFIASGSE-----------DSKVYIWHRISGK 473 (519)
T ss_pred ec-----------------chhhHHHHhhcccccceEEEe-ccCCCCcceEEecCC-----------CceEEEEEccCCc
Confidence 87 3221 122221111 1222 222 22233332222 3579999988887
Q ss_pred CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 361 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
.....++..- .+.-++|+|-....+.+++.++..+||...
T Consensus 474 ll~~LsGHs~-------------------~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 474 LLAVLSGHSK-------------------TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eeEeecCCcc-------------------eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 6544333311 244568999999898998899999999754
No 202
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.80 E-value=1.4e-07 Score=95.62 Aligned_cols=101 Identities=25% Similarity=0.390 Sum_probs=64.6
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHC--CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.|.|+++||.+.... .|......+... .|.|+.+|+|| +|.+. . . ..........+..+.+.. .
T Consensus 21 ~~~i~~~hg~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~g---~g~s~-~-----~-~~~~~~~~~~~~~~~~~~--~ 86 (282)
T COG0596 21 GPPLVLLHGFPGSSS--VWRPVFKVLPALAARYRVIAPDLRG---HGRSD-P-----A-GYSLSAYADDLAALLDAL--G 86 (282)
T ss_pred CCeEEEeCCCCCchh--hhHHHHHHhhccccceEEEEecccC---CCCCC-c-----c-cccHHHHHHHHHHHHHHh--C
Confidence 458999999876532 333322222221 19999999998 44442 0 0 111122233333444432 2
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
..++.++|||+||.+++.++.++|+.++++|+.++..
T Consensus 87 ~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 87 LEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CCceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 3449999999999999999999999999999888654
No 203
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.80 E-value=1.5e-07 Score=104.79 Aligned_cols=149 Identities=21% Similarity=0.245 Sum_probs=93.1
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC-----------cce-----EEEecCCcccccccCCCcccceee
Q 004141 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS-----------QLE-----KEFHVPQTVHGSVYADGWFEGISW 160 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~-----------~~~-----~~~~~~~~~~g~~~~~~~~~~~~w 160 (771)
.+.+.-+.|||||++||+.++.. +..+| ... ... +....-.+. +..+..+.|
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~-----~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H------~~DV~Dv~W 137 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDR-----LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH------DSDVLDVNW 137 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcc-----eEEEeeecccCCcccccccccccccceeeEEEEEecC------CCccceecc
Confidence 35678899999999999876653 76777 221 000 000000111 122368999
Q ss_pred cCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC
Q 004141 161 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL 240 (771)
Q Consensus 161 SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~ 240 (771)
|||+..|+..+-+ ..+.+||..+.+...+. .....
T Consensus 138 sp~~~~lvS~s~D--------------------------------------------nsViiwn~~tF~~~~vl-~~H~s 172 (942)
T KOG0973|consen 138 SPDDSLLVSVSLD--------------------------------------------NSVIIWNAKTFELLKVL-RGHQS 172 (942)
T ss_pred CCCccEEEEeccc--------------------------------------------ceEEEEccccceeeeee-ecccc
Confidence 9999999886433 67888988776544441 33444
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc---
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--- 317 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~--- 317 (771)
-+..++|-|-|++ ++..+. +| .|-++++. +.+-.+.+++...
T Consensus 173 ~VKGvs~DP~Gky----~ASqsd-------------Dr--tikvwrt~----------------dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 173 LVKGVSWDPIGKY----FASQSD-------------DR--TLKVWRTS----------------DWGIEKSITKPFEESP 217 (942)
T ss_pred cccceEECCccCe----eeeecC-------------Cc--eEEEEEcc----------------cceeeEeeccchhhCC
Confidence 6788999999998 887762 22 33333331 3344455554322
Q ss_pred ---cccceeecCCCCEEEEEecC
Q 004141 318 ---SAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 318 ---~~~~p~~SpDG~~l~f~~~~ 337 (771)
....+.|||||++|+..-.-
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred CcceeeecccCCCcCeecchhhc
Confidence 36789999999998865433
No 204
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.79 E-value=7.8e-07 Score=85.18 Aligned_cols=284 Identities=14% Similarity=0.145 Sum_probs=171.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+....|+|||..+|-. +..+.+.+| -.+..+....+ .+..|.| ..+.|++|+..|+..+.++...
T Consensus 48 geI~~~~F~P~gs~~aSg-----G~Dr~I~LWnv~gdceN~~~l-kgHsgAV------M~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASG-----GSDRAIVLWNVYGDCENFWVL-KGHSGAV------MELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred ceEEEEEECCCCCeEeec-----CCcceEEEEeccccccceeee-cccccee------EeeeeccCCCEEEEecCCceEE
Confidence 668889999999988753 344455667 23332222211 2333334 6899999999999888776543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCccc--CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY--AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~--~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.|+...++...+.+.+....+... -.+.|..+ .+....++.+||....+..++ .+.......+.|.-++..
T Consensus 116 --~wD~~tG~~~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--~~~kyqltAv~f~d~s~q-- 188 (338)
T KOG0265|consen 116 --GWDAETGKRIRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--FENKYQLTAVGFKDTSDQ-- 188 (338)
T ss_pred --EEecccceeeehhccccceeeecC-ccccCCeEEEecCCCceEEEEeecccchhhc--cccceeEEEEEecccccc--
Confidence 455555555555544444443333 12223332 233467999999988877777 566778889999999987
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
+.-.+ -+.+|-++|+- ...-.-.|+.+...+.....||+|..|.-.+
T Consensus 189 --v~sgg---------------Idn~ikvWd~r----------------~~d~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 189 --VISGG---------------IDNDIKVWDLR----------------KNDGLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred --eeecc---------------ccCceeeeccc----------------cCcceEEeecccCceeeEEeccCCCcccccc
Confidence 55443 12255666651 2233455667777899999999999988777
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
.+. .|.+||...-...+ ..+.+.+... -. ++.++-..+|||+++.+-+.+. ...+
T Consensus 236 Md~-----------tvrvwd~rp~~p~~------R~v~if~g~~-hn----feknlL~cswsp~~~~i~ags~---dr~v 290 (338)
T KOG0265|consen 236 MDN-----------TVRVWDVRPFAPSQ------RCVKIFQGHI-HN----FEKNLLKCSWSPNGTKITAGSA---DRFV 290 (338)
T ss_pred ccc-----------eEEEEEecccCCCC------ceEEEeecch-hh----hhhhcceeeccCCCCccccccc---cceE
Confidence 664 46677654322210 0111111100 00 1223456789999997765443 3458
Q ss_pred EEEECCCCcE-EEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEE
Q 004141 416 ISVNVSSGEL-LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 463 (771)
Q Consensus 416 ~~~d~~tg~~-~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~ 463 (771)
|.+|..+... ..|....+.+....|.|....|+..+++ .+||+.
T Consensus 291 yvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd----k~i~lg 335 (338)
T KOG0265|consen 291 YVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD----KTIYLG 335 (338)
T ss_pred EEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccC----ceeEee
Confidence 8888766443 3445455566777888877765544432 346664
No 205
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.78 E-value=2.5e-08 Score=101.11 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=76.8
Q ss_pred CCcEEEEEcCCCCCCCCCcchH-HHHH-HHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSK-SLAF-LSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~-~~~~-la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
..|++|++||..... ...|.. .... +...+|.|+++|+++.... .+.... . ......+++...+++|.+...+
T Consensus 35 ~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~--~y~~a~-~-~~~~v~~~la~~l~~L~~~~g~ 109 (275)
T cd00707 35 SRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANP--NYPQAV-N-NTRVVGAELAKFLDFLVDNTGL 109 (275)
T ss_pred CCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECcccccc--ChHHHH-H-hHHHHHHHHHHHHHHHHHhcCC
Confidence 468899999976543 133433 3333 4456899999999974211 000000 0 0011135677778888776556
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccc
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 652 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~ 652 (771)
+.++|.|+|||+||+++..++.++|++++.+++..|...
T Consensus 110 ~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 110 SLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred ChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 778999999999999999999999999999999888643
No 206
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.76 E-value=5.1e-08 Score=103.18 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=75.8
Q ss_pred CCcEEEEEcCCCCCCCCCcchH-HHHHHH-H-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSK-SLAFLS-S-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~-~~~~la-~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
..|++|++||.........|.. ....|. . ..|.|+++|++|. |.+...... .......+++.+.+++|.+...
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~---g~s~y~~a~-~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSR---AQQHYPTSA-AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCc---CCCCCcccc-ccHHHHHHHHHHHHHHHHHhhC
Confidence 3588999999765432234544 344443 2 3699999999983 332111000 1111123566677777766544
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
++.+++.|+||||||.+|..++..+|.++..+++..|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 678899999999999999999998899999999988864
No 207
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=1.4e-06 Score=84.00 Aligned_cols=296 Identities=13% Similarity=0.073 Sum_probs=156.0
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
+..-.-++|+++...|++-...+.|++|++..=..+..+.....++. .....++|+||-+-+++.-.++ ..-.+|.+
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~g-~~l~vyk~ 162 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKRG-NKLCVYKL 162 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEccC-CEEEEEEe
Confidence 44455666776666666666777888887743222222222222232 3467899999999988766543 33444544
Q ss_pred e--cCC-cceEEEecC----CcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004141 130 W--SQS-QLEKEFHVP----QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 130 ~--~~~-~~~~~~~~~----~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
. .+| -.-..+..+ ...|.. ..-++-..-.+++|+..+
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v-----~~i~iGiA~~~k~imsas------------------------------- 206 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQV-----DIINIGIAGNAKYIMSAS------------------------------- 206 (420)
T ss_pred eecccCCCCcccccccccccchhccc-----ceEEEeecCCceEEEEec-------------------------------
Confidence 4 111 111111111 000100 001233334444444432
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCcee
Q 004141 203 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 282 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l 282 (771)
....|++|++.+.....+ -.........+.||||+. |+..+...+ -.+
T Consensus 207 -------------~dt~i~lw~lkGq~L~~i--dtnq~~n~~aavSP~GRF----ia~~gFTpD-------------VkV 254 (420)
T KOG2096|consen 207 -------------LDTKICLWDLKGQLLQSI--DTNQSSNYDAAVSPDGRF----IAVSGFTPD-------------VKV 254 (420)
T ss_pred -------------CCCcEEEEecCCceeeee--ccccccccceeeCCCCcE----EEEecCCCC-------------ceE
Confidence 236899999996666666 233445667899999998 887763222 123
Q ss_pred EEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC--C-
Q 004141 283 YAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--N- 359 (771)
Q Consensus 283 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~--~- 359 (771)
|-.=. + +++..+ +-...-.|..+...+...+|||+.++++..+.+. ..+||-.|+.= +
T Consensus 255 wE~~f--~--kdG~fq------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG---------~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 255 WEPIF--T--KDGTFQ------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG---------KWRIWDTDVRYEAGQ 315 (420)
T ss_pred EEEEe--c--cCcchh------hhhhhheeccchhheeeeeeCCCcceeEEEecCC---------cEEEeeccceEecCC
Confidence 32221 0 011110 1122345666677789999999999999998774 35555444311 1
Q ss_pred CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC--CCCCcee
Q 004141 360 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP--AESNFSW 437 (771)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~--~~~~~~~ 437 (771)
..+.+-.+. .+... -....-.+..||.|+.|.++. +...++ +...+|+...-.. ....+..
T Consensus 316 Dpk~Lk~g~--------~pl~a-----ag~~p~RL~lsP~g~~lA~s~--gs~l~~--~~se~g~~~~~~e~~h~~~Is~ 378 (420)
T KOG2096|consen 316 DPKILKEGS--------APLHA-----AGSEPVRLELSPSGDSLAVSF--GSDLKV--FASEDGKDYPELEDIHSTTISS 378 (420)
T ss_pred CchHhhcCC--------cchhh-----cCCCceEEEeCCCCcEEEeec--CCceEE--EEcccCccchhHHHhhcCceee
Confidence 111111110 00000 001123667899999665543 333444 4555665443222 2235677
Q ss_pred eEEeecCCEEEEEEe
Q 004141 438 SLLTLDGDNIIAVSS 452 (771)
Q Consensus 438 ~~~s~dg~~l~~~~~ 452 (771)
..|+++|++++.+..
T Consensus 379 is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 379 ISYSSDGKYIATCGD 393 (420)
T ss_pred EEecCCCcEEeeecc
Confidence 899999998876653
No 208
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.75 E-value=1.5e-07 Score=87.85 Aligned_cols=221 Identities=13% Similarity=0.149 Sum_probs=112.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc-
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS- 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~- 594 (771)
.+|..+..|--.|+.. ..++.++||+..|.+.. ...|...+.+|+.+||.|+.+|.--.- |.+... ..++..
T Consensus 10 ~~~~~I~vwet~P~~~-~~~~~~tiliA~Gf~rr--mdh~agLA~YL~~NGFhViRyDsl~Hv--GlSsG~--I~eftms 82 (294)
T PF02273_consen 10 EDGRQIRVWETRPKNN-EPKRNNTILIAPGFARR--MDHFAGLAEYLSANGFHVIRYDSLNHV--GLSSGD--INEFTMS 82 (294)
T ss_dssp TTTEEEEEEEE---TT-S---S-EEEEE-TT-GG--GGGGHHHHHHHHTTT--EEEE---B-----------------HH
T ss_pred CCCCEEEEeccCCCCC-CcccCCeEEEecchhHH--HHHHHHHHHHHhhCCeEEEeccccccc--cCCCCC--hhhcchH
Confidence 4688899999889854 44567899999996544 447888999999999999999965321 111100 111211
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
...+++..+++|+.+++ ..+++|+-.|.-|-+|...+++ . ....+|...+++++..........++.-...-...
T Consensus 83 ~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i-~lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~~lp 157 (294)
T PF02273_consen 83 IGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-I-NLSFLITAVGVVNLRDTLEKALGYDYLQLPIEQLP 157 (294)
T ss_dssp HHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGGS-GGG--
T ss_pred HhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-c-CcceEEEEeeeeeHHHHHHHHhccchhhcchhhCC
Confidence 23578889999999775 5779999999999999999985 4 37777888899987533211000000000000000
Q ss_pred CCccCCCCCC-hhh-HHHH--hh----cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004141 675 GKDSFTESPS-VED-LTRF--HS----KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 746 (771)
Q Consensus 675 ~~~~~~~~~~-~~~-~~~~--~~----~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~ 746 (771)
..-.+.+... .+. .... .. .|....++.+.+|++..++++|.+|...+..++...+.. ..++++.++|+.
T Consensus 158 ~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s--~~~klysl~Gs~ 235 (294)
T PF02273_consen 158 EDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINS--NKCKLYSLPGSS 235 (294)
T ss_dssp SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT----EEEEEETT-S
T ss_pred CcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCC--CceeEEEecCcc
Confidence 0000000000 000 0000 01 123345778899999999999999977776666555433 358899999999
Q ss_pred ccCC
Q 004141 747 HGIE 750 (771)
Q Consensus 747 H~~~ 750 (771)
|.+.
T Consensus 236 HdL~ 239 (294)
T PF02273_consen 236 HDLG 239 (294)
T ss_dssp S-TT
T ss_pred chhh
Confidence 9875
No 209
>PTZ00420 coronin; Provisional
Probab=98.75 E-value=4.6e-06 Score=91.96 Aligned_cols=163 Identities=8% Similarity=0.045 Sum_probs=96.2
Q ss_pred ccceEEEeCCC-CCeEEEEecCCCCCCeEEEEecCCcc-eE----EEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004141 99 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWSQSQL-EK----EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
+.+...+|+|+ +..||..+.. +.-.+|.+..++.. .. +..+. +..+ .+..++|+|++..++..+.
T Consensus 75 ~~V~~lafsP~~~~lLASgS~D--gtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~------~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSED--LTIRVWEIPHNDESVKEIKDPQCILK-GHKK------KISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCCccccccccceEEee-cCCC------cEEEEEECCCCCeEEEEEe
Confidence 56889999997 6777665443 22233333222211 11 11111 1111 2368999999987765432
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
....|.+||+.+++.... ......+..+.|+|||+
T Consensus 146 -------------------------------------------~DgtIrIWDl~tg~~~~~--i~~~~~V~SlswspdG~ 180 (568)
T PTZ00420 146 -------------------------------------------FDSFVNIWDIENEKRAFQ--INMPKKLSSLKWNIKGN 180 (568)
T ss_pred -------------------------------------------CCCeEEEEECCCCcEEEE--EecCCcEEEEEECCCCC
Confidence 236789999988875433 22334678899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccc-----cceeecC
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSA-----FFPRFSP 326 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~-----~~p~~Sp 326 (771)
. |+..+ ....|.++|+ .+++. ..+..+.+.. ....||+
T Consensus 181 l----Lat~s---------------~D~~IrIwD~-----------------Rsg~~i~tl~gH~g~~~s~~v~~~~fs~ 224 (568)
T PTZ00420 181 L----LSGTC---------------VGKHMHIIDP-----------------RKQEIASSFHIHDGGKNTKNIWIDGLGG 224 (568)
T ss_pred E----EEEEe---------------cCCEEEEEEC-----------------CCCcEEEEEecccCCceeEEEEeeeEcC
Confidence 7 66554 2236888887 44433 3344443321 2224579
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
|+++|+..+.+. ....+|.+||+..
T Consensus 225 d~~~IlTtG~d~-------~~~R~VkLWDlr~ 249 (568)
T PTZ00420 225 DDNYILSTGFSK-------NNMREMKLWDLKN 249 (568)
T ss_pred CCCEEEEEEcCC-------CCccEEEEEECCC
Confidence 999888777553 1234699999875
No 210
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.74 E-value=1.7e-06 Score=89.17 Aligned_cols=265 Identities=13% Similarity=0.056 Sum_probs=136.7
Q ss_pred CCCCcceEEEEEee-chhhcccceeEEEEEEeecCCCCccceeecCCc--cccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004141 49 GNGNGTQAMFSISQ-PNLLANKRKKFMLSTVISKENENSVTFQWAPFP--VEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 49 ~s~dg~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~--~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.|+||+.++....- .-+.+++....+.++|+.+.. ....+...+-| .........++||||++|++ .+.. ....
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V-~n~~-p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLF-YQFS-PSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-EEeEEccCCCchhhccCccceEEECCCCCEEEE-ecCC-CCCE
Confidence 57899988766541 122344455677777764332 11122211100 00122447889999999854 4432 2345
Q ss_pred EEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCC-CCCCCCCccCCCCCCccc
Q 004141 126 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS-TKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 203 (771)
+-+++ ..++....+.++...+.....+. .....++||+.+.+..+...... .-.... .......... . .
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~vy~t~e~--~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~~~~~v~~r-----P-~ 200 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHIFPTAND--TFFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHPEDEYLINH-----P-A 200 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEecCC--ccEEEeecCceEEEEecCCCceE-EeeeeeecCCccccccC-----C-c
Confidence 66666 55555555665543332222222 34456789987766554432210 000000 0000000000 0 2
Q ss_pred ccC-CcCcccCCccCceEEEEEccCCceeeccC----CC----CCCccc---eEEEecCCCCCccEEEEEeecCcceeee
Q 004141 204 WEE-DWGETYAGKRQPSLFVININSGEVQAVKG----IP----KSLSVG---QVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 204 ~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~l~~----~~----~~~~~~---~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
|.+ |....++.. ...|+++|+.+.+...... +. ..+..+ .++++|||++ ++........
T Consensus 201 ~~~~dg~~~~vs~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~----lyV~~~~~~~---- 271 (352)
T TIGR02658 201 YSNKSGRLVWPTY-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR----IYLLADQRAK---- 271 (352)
T ss_pred eEcCCCcEEEEec-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE----EEEEecCCcc----
Confidence 233 433333333 3899999976655433310 11 122222 3899999997 6653421110
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccc
Q 004141 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 351 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l 351 (771)
+.+ .....+|+.+|+ .+++...-...........+||||+.++|..+.. ...|
T Consensus 272 ~th-k~~~~~V~ViD~-----------------~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~---------s~~V 324 (352)
T TIGR02658 272 WTH-KTASRFLFVVDA-----------------KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTG---------DKTL 324 (352)
T ss_pred ccc-cCCCCEEEEEEC-----------------CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCC---------CCcE
Confidence 000 012248999998 6666543222344677899999999667777653 2469
Q ss_pred eeeecCCCCC
Q 004141 352 HRIDWPTNGN 361 (771)
Q Consensus 352 ~~~d~~~~~~ 361 (771)
.++|..+++.
T Consensus 325 sViD~~t~k~ 334 (352)
T TIGR02658 325 YIFDAETGKE 334 (352)
T ss_pred EEEECcCCeE
Confidence 9999888764
No 211
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.73 E-value=1.6e-06 Score=94.77 Aligned_cols=264 Identities=14% Similarity=0.114 Sum_probs=148.0
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCC---
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE--- 122 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~--- 122 (771)
....||||++|+|+.+... .....++.+++.++ +. + ...+.. .....+.|++||+.++|++.....
T Consensus 128 ~~~~Spdg~~la~~~s~~G----~e~~~l~v~Dl~tg--~~--l-~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGG----SEWYTLRVFDLETG--KF--L-PDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEETTTSSEEEEEEEETT----SSEEEEEEEETTTT--EE--E-EEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeECCCCCEEEEEecCCC----CceEEEEEEECCCC--cC--c-CCcccc--cccceEEEeCCCCEEEEEEeCcccccc
Confidence 3456899999999987643 45567888887443 11 1 111111 112238999999999999876532
Q ss_pred ----CCeEEEEecCCc-ce-EEE-ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC
Q 004141 123 ----SPIQFELWSQSQ-LE-KEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 195 (771)
Q Consensus 123 ----~~~~~~~~~~~~-~~-~~~-~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (771)
..+++....+.. .. .++ ...... .++..+.+|+||++|+..+....
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~-------~~~~~~~~s~d~~~l~i~~~~~~-------------------- 249 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEP-------FWFVSVSRSKDGRYLFISSSSGT-------------------- 249 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCT-------TSEEEEEE-TTSSEEEEEEESSS--------------------
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCC-------cEEEEEEecCcccEEEEEEEccc--------------------
Confidence 233444333322 22 233 322211 01347889999999887655431
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCC-----ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceee
Q 004141 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSG-----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~-----~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~ 270 (771)
....+|++|+..+ +.+.+ .+.........-.. |.. +++.++.+.+
T Consensus 250 --------------------~~s~v~~~d~~~~~~~~~~~~~l--~~~~~~~~~~v~~~-~~~----~yi~Tn~~a~--- 299 (414)
T PF02897_consen 250 --------------------SESEVYLLDLDDGGSPDAKPKLL--SPREDGVEYYVDHH-GDR----LYILTNDDAP--- 299 (414)
T ss_dssp --------------------SEEEEEEEECCCTTTSS-SEEEE--EESSSS-EEEEEEE-TTE----EEEEE-TT-T---
T ss_pred --------------------cCCeEEEEeccccCCCcCCcEEE--eCCCCceEEEEEcc-CCE----EEEeeCCCCC---
Confidence 1278999999875 56666 33322222222122 666 8888865443
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc----ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004141 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
+..|+.+++ +... ...+..+.....--.++..+++|++....+
T Consensus 300 --------~~~l~~~~l-----------------~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-------- 346 (414)
T PF02897_consen 300 --------NGRLVAVDL-----------------ADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-------- 346 (414)
T ss_dssp --------T-EEEEEET-----------------TSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET--------
T ss_pred --------CcEEEEecc-----------------cccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC--------
Confidence 248999998 3322 224444433333345566788898888775
Q ss_pred ccccceeeecC-CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCc
Q 004141 347 ATDSLHRIDWP-TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGE 424 (771)
Q Consensus 347 ~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~d~~tg~ 424 (771)
+..+|.++++. +.....+... ..+ .+......+++..++|..+. -....+|.+|+.+++
T Consensus 347 ~~~~l~v~~~~~~~~~~~~~~p-----------~~g--------~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 347 GSSRLRVYDLDDGKESREIPLP-----------EAG--------SVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp TEEEEEEEETT-TEEEEEEESS-----------SSS--------EEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred CccEEEEEECCCCcEEeeecCC-----------cce--------EEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 36789999988 3222111000 000 11122334567777777654 345579999999999
Q ss_pred EEEec
Q 004141 425 LLRIT 429 (771)
Q Consensus 425 ~~~l~ 429 (771)
.+.+.
T Consensus 408 ~~~~k 412 (414)
T PF02897_consen 408 LTLLK 412 (414)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98875
No 212
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.71 E-value=3.4e-06 Score=90.44 Aligned_cols=239 Identities=15% Similarity=0.095 Sum_probs=157.9
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
...+|+--|.+|||.+.+- ..--.|.-....-..+...+..-.....|++|+....++..+..+-+||..+|-....-
T Consensus 311 ~t~~~N~tGDWiA~g~~kl-gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF- 388 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKL-GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF- 388 (893)
T ss_pred eEEEecccCCEEEEcCCcc-ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe-
Confidence 6889999999999976541 11112221111111222333344456779999766677778899999999988654431
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
+.....+..+.|+.+|+. |+-.+ -++.+..+|+. .....+.+|..
T Consensus 389 teHts~Vt~v~f~~~g~~----llssS---------------LDGtVRAwDlk----------------RYrNfRTft~P 433 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNV----LLSSS---------------LDGTVRAWDLK----------------RYRNFRTFTSP 433 (893)
T ss_pred ccCCCceEEEEEEecCCE----EEEee---------------cCCeEEeeeec----------------ccceeeeecCC
Confidence 566678899999999995 55544 33367777771 23344555544
Q ss_pred Cc-cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004141 316 IS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 316 ~~-~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
.. .....+..|-|. |++....+ ...|++|++++|+..-+.++... -+..+
T Consensus 434 ~p~QfscvavD~sGe-lV~AG~~d---------~F~IfvWS~qTGqllDiLsGHEg-------------------PVs~l 484 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGE-LVCAGAQD---------SFEIFVWSVQTGQLLDILSGHEG-------------------PVSGL 484 (893)
T ss_pred CceeeeEEEEcCCCC-EEEeeccc---------eEEEEEEEeecCeeeehhcCCCC-------------------cceee
Confidence 33 355667777788 56665443 57899999999997655544321 24567
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 395 ~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
+|+|+|. ++++.+++...++|-+=-..++++.+.-... +-...|.|||+.|..+..+ .+|-..+..
T Consensus 485 ~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd-vl~vsfrPdG~elaVaTld----gqItf~d~~ 550 (893)
T KOG0291|consen 485 SFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLEIRSD-VLAVSFRPDGKELAVATLD----GQITFFDIK 550 (893)
T ss_pred EEccccC-eEEeccccceEEEEEeeccCceeeeEeeccc-eeEEEEcCCCCeEEEEEec----ceEEEEEhh
Confidence 8999998 6688899999999987666677777755433 4557899999999876533 344444443
No 213
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.70 E-value=3e-07 Score=102.50 Aligned_cols=122 Identities=17% Similarity=0.141 Sum_probs=73.1
Q ss_pred CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-CcceecCCCC
Q 004141 238 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESI 316 (771)
Q Consensus 238 ~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~ 316 (771)
++..+..+.||||+.. +|-.+. +..|.+++. .+ ...+.|-.+.
T Consensus 128 H~~DV~Dv~Wsp~~~~----lvS~s~---------------DnsViiwn~-----------------~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 128 HDSDVLDVNWSPDDSL----LVSVSL---------------DNSVIIWNA-----------------KTFELLKVLRGHQ 171 (942)
T ss_pred CCCccceeccCCCccE----EEEecc---------------cceEEEEcc-----------------ccceeeeeeeccc
Confidence 4456778899999997 777762 225777775 33 3456666777
Q ss_pred ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC-CCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 317 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
..+....|.|-|++||..+.+. .|.+|+... +-.+.+++.... .+.. .....+.
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDr-----------tikvwrt~dw~i~k~It~pf~~------~~~~--------T~f~RlS 226 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDR-----------TLKVWRTSDWGIEKSITKPFEE------SPLT--------TFFLRLS 226 (942)
T ss_pred ccccceEECCccCeeeeecCCc-----------eEEEEEcccceeeEeeccchhh------CCCc--------ceeeecc
Confidence 7899999999999998888765 255555322 111222221110 0000 1235789
Q ss_pred cccCCCEEEEEeee-CCeeEEEEEEC
Q 004141 396 WLSDGCTMLLSSIW-GSSQVIISVNV 420 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~-~~~~~l~~~d~ 420 (771)
|||||++|.....- ++...+-.++.
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEec
Confidence 99999988654442 23333444444
No 214
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.67 E-value=1.9e-06 Score=83.32 Aligned_cols=210 Identities=13% Similarity=0.176 Sum_probs=112.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHH-HHHHHHCCcEE-EEECCCC---------CCCCChhh-
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS-LAFLSSVGYSL-LIVNYRG---------SLGFGEEA- 584 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~-~~~la~~G~~V-v~~d~rG---------~~~~g~~~- 584 (771)
.|...+.++..|+++.++.++|+|.++-|.... ...... ...+++.-..+ +.+.|+. ...|-...
T Consensus 19 ~~~~yri~i~~P~~~~~~~~YpVlY~lDGn~vf---~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~~r~~DyTp~~~ 95 (264)
T COG2819 19 TGRKYRIFIATPKNYPKPGGYPVLYMLDGNAVF---NALTEIMLRILADLPPPVIVGIGYETILVFDPNRRAYDYTPPSA 95 (264)
T ss_pred CCcEEEEEecCCCCCCCCCCCcEEEEecchhhh---chHHHHhhhhhhcCCCceEEEeccccccccccccccccCCCCCC
Confidence 467788899999988777779977777663221 111112 22233322222 2333332 11111100
Q ss_pred ---h----hcCCCCccccc--hhhHHHHHHHHH-HcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh
Q 004141 585 ---L----QSLPGKVGSQD--VNDVLTAIDHVI-DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 585 ---~----~~~~~~~~~~~--~~D~~~~i~~l~-~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~ 654 (771)
. .......|..+ .+.+..-+.-.+ ++..++.++.+|+|||+||.+++.....+|+.|...++.+|..-+.
T Consensus 96 ~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~ 175 (264)
T COG2819 96 NAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWH 175 (264)
T ss_pred CcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhC
Confidence 0 00011111111 233444444333 3456899999999999999999999999999999999999975211
Q ss_pred hhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEe--eCCCCc------cCcHHHHHH
Q 004141 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL--GAQDLR------VPVSNGLQY 726 (771)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~--G~~D~~------vp~~~~~~~ 726 (771)
+........-.... + ..++.|.. |+.|.. ....++.+.
T Consensus 176 --------------------------------n~~~l~~~~~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~ 221 (264)
T COG2819 176 --------------------------------NEAILREIESLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAEL 221 (264)
T ss_pred --------------------------------CHHHhccccccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHH
Confidence 11111111111111 2 33444444 444432 122344555
Q ss_pred HHHHHh-CCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 727 ARALRE-KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 727 ~~~l~~-~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
...+++ .|..+.+..+++.+|+-. -...+..++.|+.
T Consensus 222 ~~~~~~~~g~~~~f~~~~~~~H~~~----~~~~~~~al~~l~ 259 (264)
T COG2819 222 SSLLEKRTGARLVFQEEPLEHHGSV----IHASLPSALRFLD 259 (264)
T ss_pred HHHHhhccCCceEecccccccccch----HHHHHHHHHHhhh
Confidence 556666 677888999998888643 1233445555543
No 215
>PTZ00420 coronin; Provisional
Probab=98.67 E-value=6.5e-06 Score=90.75 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=95.6
Q ss_pred eCCCCCeEEEEecCC-CCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCC-CCeEEEEecCCCCCCCCccC
Q 004141 106 PSPSGSKLLVVRNPE-NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 106 ~SPdG~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD-g~~la~~~~~~~~~~~~~~~ 183 (771)
.+.+++++|+.-... ++...++.+|..+....+..+. +..+.| ..++|+|+ +..||..+.+
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~-gH~~~V------~~lafsP~~~~lLASgS~D---------- 96 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLK-GHTSSI------LDLQFNPCFSEILASGSED---------- 96 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEc-CCCCCE------EEEEEcCCCCCEEEEEeCC----------
Confidence 455677788766543 2444567777444333333322 111222 68999997 6767665432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce---------eeccCCCCCCccceEEEecCCCCC
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---------QAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---------~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
..|.+||+.++.. ..+ ......+..+.|+|++..
T Consensus 97 ----------------------------------gtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~P~g~~- 139 (568)
T PTZ00420 97 ----------------------------------LTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWNPMNYY- 139 (568)
T ss_pred ----------------------------------CeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEECCCCCe-
Confidence 5678888765321 122 223346788999999987
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEE
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
++.++- .+..|.++|+ .+++. ..+. ....+.+..|+|||+.|+.
T Consensus 140 ---iLaSgS--------------~DgtIrIWDl-----------------~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 140 ---IMCSSG--------------FDSFVNIWDI-----------------ENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ---EEEEEe--------------CCCeEEEEEC-----------------CCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 765541 2236788887 44442 3333 3456889999999998876
Q ss_pred EecCCCCCCCCccccccceeeecCCCCC
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
...+ ..|.+||+.++..
T Consensus 185 ~s~D-----------~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 185 TCVG-----------KHMHIIDPRKQEI 201 (568)
T ss_pred EecC-----------CEEEEEECCCCcE
Confidence 5543 3589999887654
No 216
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.65 E-value=2.3e-06 Score=86.82 Aligned_cols=260 Identities=13% Similarity=0.112 Sum_probs=146.1
Q ss_pred echhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEE
Q 004141 62 QPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEF 139 (771)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~ 139 (771)
...|+.+...+++.+|+. .+... ..|....+.+....|+.+|.+|+-..-.+ ..++|+ .+...+..
T Consensus 247 G~~LatG~~~G~~riw~~--~G~l~-----~tl~~HkgPI~slKWnk~G~yilS~~vD~-----ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNK--DGNLI-----STLGQHKGPIFSLKWNKKGTYILSGGVDG-----TTILWDAHTGTVKQQF 314 (524)
T ss_pred CCeEEEeecCcEEEEEec--Cchhh-----hhhhccCCceEEEEEcCCCCEEEeccCCc-----cEEEEeccCceEEEee
Confidence 333334445677777664 33222 22334446799999999999998654332 455663 35555554
Q ss_pred ecCCcccccccCCCccc---ceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCcc
Q 004141 140 HVPQTVHGSVYADGWFE---GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR 216 (771)
Q Consensus 140 ~~~~~~~g~~~~~~~~~---~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~ 216 (771)
.+.....-+| +|.. -.+=++||..-+|--..+.+. .....+........|.+...-++....
T Consensus 315 ~~~s~~~lDV---dW~~~~~F~ts~td~~i~V~kv~~~~P~------------~t~~GH~g~V~alk~n~tg~LLaS~Sd 379 (524)
T KOG0273|consen 315 EFHSAPALDV---DWQSNDEFATSSTDGCIHVCKVGEDRPV------------KTFIGHHGEVNALKWNPTGSLLASCSD 379 (524)
T ss_pred eeccCCccce---EEecCceEeecCCCceEEEEEecCCCcc------------eeeecccCceEEEEECCCCceEEEecC
Confidence 4422221111 1111 223456666544433322221 112223333444556666444455556
Q ss_pred CceEEEEEccC-CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 217 QPSLFVININS-GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 217 ~~~l~v~d~~~-~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
+..|-+|.... +....+ -.....+-.+.|||+|.. ..+......+ .....++.+-.+|+
T Consensus 380 D~TlkiWs~~~~~~~~~l--~~Hskei~t~~wsp~g~v-------~~n~~~~~~l---~sas~dstV~lwdv-------- 439 (524)
T KOG0273|consen 380 DGTLKIWSMGQSNSVHDL--QAHSKEIYTIKWSPTGPV-------TSNPNMNLML---ASASFDSTVKLWDV-------- 439 (524)
T ss_pred CCeeEeeecCCCcchhhh--hhhccceeeEeecCCCCc-------cCCCcCCceE---EEeecCCeEEEEEc--------
Confidence 67888888543 334444 333445677899999874 1111111111 11224456777887
Q ss_pred hhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 296 ELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
..+ ....|+.+...+.+.+|||||++||+-+.+. .+++|+.++++..+-..+.
T Consensus 440 ---------~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg-----------~V~iws~~~~~l~~s~~~~------ 493 (524)
T KOG0273|consen 440 ---------ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG-----------CVHIWSTKTGKLVKSYQGT------ 493 (524)
T ss_pred ---------cCCceeEeeccCCCceEEEEecCCCcEEEecCCCC-----------eeEeccccchheeEeecCC------
Confidence 444 4566788888899999999999999877664 3778887776653221111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~ 408 (771)
.++..++|+.+|..|....+
T Consensus 494 --------------~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 494 --------------GGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred --------------CeEEEEEEcCCCCEEEEEec
Confidence 13567899999987766554
No 217
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.2e-06 Score=90.67 Aligned_cols=231 Identities=16% Similarity=0.193 Sum_probs=145.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+..+.|+++|+.||.....+ .+.+|+..+.+++........+.| ++++|. +..+...
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g-----~v~iwD~~~~k~~~~~~~~h~~rv------g~laW~--~~~lssG-------- 276 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDG-----TVQIWDVKEQKKTRTLRGSHASRV------GSLAWN--SSVLSSG-------- 276 (484)
T ss_pred CceEEEEECCCCCEEEEeecCC-----eEEEEehhhccccccccCCcCcee------EEEecc--CceEEEe--------
Confidence 5688999999999999875544 666775444444444322222233 788998 3223221
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCCcc
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.+...|...|+...+. ..+ ......+....|++|++.
T Consensus 277 ------------------------------------sr~~~I~~~dvR~~~~~~~~~--~~H~qeVCgLkws~d~~~--- 315 (484)
T KOG0305|consen 277 ------------------------------------SRDGKILNHDVRISQHVVSTL--QGHRQEVCGLKWSPDGNQ--- 315 (484)
T ss_pred ------------------------------------cCCCcEEEEEEecchhhhhhh--hcccceeeeeEECCCCCe---
Confidence 1345677777655432 112 233446778999999998
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++-.++ +..++++|.. .......++++...+...+|+|=-+-|+-+..
T Consensus 316 -lASGgn---------------DN~~~Iwd~~----------------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 316 -LASGGN---------------DNVVFIWDGL----------------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred -eccCCC---------------ccceEeccCC----------------CccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 776653 2367777751 44566788889999999999997666554332
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVI 415 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l 415 (771)
. .....|..||..++........ +..+-++.||+..+.|+.+... .+...|
T Consensus 364 G--------s~D~~i~fwn~~~g~~i~~vdt--------------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 364 G--------SADRCIKFWNTNTGARIDSVDT--------------------GSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred C--------CcccEEEEEEcCCCcEeccccc--------------------CCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 2 3456799999887765322111 1235688999999988766543 234567
Q ss_pred EEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 416 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 416 ~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
|.+.- -..+..+.....-+....+||||..|+....
T Consensus 416 w~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 416 WKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred Eeccc-cceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 77653 2233444444444556678888887766554
No 218
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.64 E-value=3.8e-07 Score=95.52 Aligned_cols=70 Identities=9% Similarity=-0.007 Sum_probs=55.8
Q ss_pred cCCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCC-CEEEEEeCCCCcc--CCCCCChHHHHHHHHHHHHHh
Q 004141 700 ISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHG--IERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 700 ~~~i~-~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+.+|+ +|+|.+.|+.|.++|+.++..+.+.....+- +.+.++.+++||. +.....+.+.+..|.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 56788 9999999999999999999998887643322 3456777789996 445667778999999999864
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=3.3e-06 Score=82.94 Aligned_cols=214 Identities=16% Similarity=0.222 Sum_probs=117.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCcceEEEecCCcccccccCC---CcccceeecCCCCeEEEEec
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYAD---GWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~wSpDg~~la~~~~ 172 (771)
.++...+|-|-+..-+.+.-+. =+.+| ......+........++.++-+ -......|.+||..++-.+.
T Consensus 141 rnvtclawRPlsaselavgCr~-----gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRA-----GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred cceeEEEeccCCcceeeeeecc-----eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc
Confidence 4678899999877654444332 24455 2223333322222233333222 23468899999998887643
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLN 251 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg 251 (771)
+...|.+||+++|.-++| .+. -.+..-..|||||
T Consensus 216 -------------------------------------------gsssi~iWdpdtg~~~pL--~~~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 216 -------------------------------------------GSSSIMIWDPDTGQKIPL--IPKGLGGFSLLKWSPDG 250 (445)
T ss_pred -------------------------------------------CcceEEEEcCCCCCcccc--cccCCCceeeEEEcCCC
Confidence 337899999999998888 433 3355678999999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEE
Q 004141 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
.. |...+ -+. ...||... ++-...+-.-..+.+....|||+|+.|
T Consensus 251 d~----lfaAt-~da------------vfrlw~e~------------------q~wt~erw~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 251 DV----LFAAT-CDA------------VFRLWQEN------------------QSWTKERWILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred CE----EEEec-ccc------------eeeeehhc------------------ccceecceeccCCceeeeeecCCCCEE
Confidence 95 44433 211 11344222 112222222233478889999999999
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCC-ccceeeEEeccccc---CCCCCcccccCCCCCCccccCCCEEEEEe
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPVVQCA---EGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~---~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~ 407 (771)
.|..... ..||............ ..+...+..+.+-+ .... ..+-+.....++|-|-|.+|++.-
T Consensus 296 Lf~~sgs----------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag-~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 296 LFACSGS----------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAG-QRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred EEEEcCC----------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcC-cccccCccceeeECCCCCEEEEEE
Confidence 9988654 3466655443322111 11111111111110 0000 112233456788989898887655
Q ss_pred e
Q 004141 408 I 408 (771)
Q Consensus 408 ~ 408 (771)
.
T Consensus 365 K 365 (445)
T KOG2139|consen 365 K 365 (445)
T ss_pred c
Confidence 4
No 220
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.62 E-value=1.4e-06 Score=98.26 Aligned_cols=99 Identities=18% Similarity=0.117 Sum_probs=65.8
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh-------hcCCC------------Cccccc
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-------QSLPG------------KVGSQD 596 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~-------~~~~~------------~~~~~~ 596 (771)
..|+||++||.... ...|...+..|+++||.|+++|+||.+....... ..... ....+.
T Consensus 448 g~P~VVllHG~~g~--~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~ 525 (792)
T TIGR03502 448 GWPVVIYQHGITGA--KENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQS 525 (792)
T ss_pred CCcEEEEeCCCCCC--HHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHH
Confidence 46899999996654 3467788889999999999999999443311100 00000 011223
Q ss_pred hhhHHHHHHHHH------Hc----CCCCCCeEEEEEcChhHHHHHHHHhh
Q 004141 597 VNDVLTAIDHVI------DM----GLANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 597 ~~D~~~~i~~l~------~~----~~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
+.|+......+. .. ...+..+|.++||||||.++..++..
T Consensus 526 v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 526 ILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 456666555554 11 12456799999999999999999875
No 221
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.60 E-value=4.3e-07 Score=90.32 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=143.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+..+.|.|+|++|+..+..+ -|.+|.+....-.+ -...| |..+....||++|.+++......-.+
T Consensus 98 ~V~~v~WtPeGRRLltgs~SG-----EFtLWNg~~fnFEt--ilQaH-----Ds~Vr~m~ws~~g~wmiSgD~gG~iK-- 163 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSG-----EFTLWNGTSFNFET--ILQAH-----DSPVRTMKWSHNGTWMISGDKGGMIK-- 163 (464)
T ss_pred ceeeEEEcCCCceeEeecccc-----cEEEecCceeeHHH--Hhhhh-----cccceeEEEccCCCEEEEcCCCceEE--
Confidence 477899999999998876554 58888542111100 01112 22347999999999987755444322
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
+|......-......+..-.....|++.-..-+.-..+..|-+||....+..++. ......+..+.|.|.- . |+
T Consensus 164 yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~k-g----Li 237 (464)
T KOG0284|consen 164 YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTK-G----LI 237 (464)
T ss_pred ecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCcc-c----ee
Confidence 4432111110000011112223445554334444455689999998766554431 4556678899999974 4 66
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+++- ++.-+-.+|. .+++ +-.|..+...+....|+|+|.+|+..+.+.
T Consensus 238 asgs--------------kDnlVKlWDp-----------------rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 238 ASGS--------------KDNLVKLWDP-----------------RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred EEcc--------------CCceeEeecC-----------------CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 6652 2225667776 5554 455667788899999999999999888664
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
.+.++|+.+=+..+...+. ...+....|+|=...|+.+...++....|.+
T Consensus 287 -----------~~kv~DiR~mkEl~~~r~H-------------------kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 287 -----------SCKVFDIRTMKELFTYRGH-------------------KKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred -----------eEEEEehhHhHHHHHhhcc-------------------hhhheeeccccccccceeeccCCCceEEEec
Confidence 3667776632221111100 0124567899988888877777777777766
Q ss_pred E
Q 004141 419 N 419 (771)
Q Consensus 419 d 419 (771)
+
T Consensus 337 ~ 337 (464)
T KOG0284|consen 337 G 337 (464)
T ss_pred c
Confidence 6
No 222
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.58 E-value=1.5e-07 Score=91.76 Aligned_cols=168 Identities=19% Similarity=0.194 Sum_probs=81.5
Q ss_pred CCcEEEEEcCCCCCCCCCcchHH----HHHHHHCCcEEEEECCCCCC--CCChh---------h-hhcCCCCccc-----
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKS----LAFLSSVGYSLLIVNYRGSL--GFGEE---------A-LQSLPGKVGS----- 594 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~----~~~la~~G~~Vv~~d~rG~~--~~g~~---------~-~~~~~~~~~~----- 594 (771)
+++-|+++||.+.+. ..|... ...|.+.++..+.+|-+-.. +.+-. . .......|..
T Consensus 3 ~k~riLcLHG~~~na--~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYGQNA--EIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT--H--HHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCCcCH--HHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 457899999976653 233333 33444448898888854211 00000 0 0001111111
Q ss_pred cchhhHHHHHHHHHH----cCCCCCCeEEEEEcChhHHHHHHHHhhC--------CCceeEEEecCCccchhhhhcCCCC
Q 004141 595 QDVNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNLALMVGTTDI 662 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~p~~~~~~~~~~~~~ 662 (771)
....++..++++|.+ ++. =.+|+|+|.||.+|+.++... ...++.+|+.++.......
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GP----fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------ 150 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGP----FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------ 150 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-------
T ss_pred ccccCHHHHHHHHHHHHHhcCC----eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh------
Confidence 124455555555543 332 358999999999999888532 2347888888876421100
Q ss_pred CcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004141 663 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
........+|++|+|.++|.+|.+++++.++.+++.+... .+++.+
T Consensus 151 -------------------------------~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h 196 (212)
T PF03959_consen 151 -------------------------------YQELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEH 196 (212)
T ss_dssp -------------------------------GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEE
T ss_pred -------------------------------hhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEE
Confidence 0000123457899999999999999999999999999874 567777
Q ss_pred CCCCccCC
Q 004141 743 PNDVHGIE 750 (771)
Q Consensus 743 ~~~~H~~~ 750 (771)
+ +||.+.
T Consensus 197 ~-gGH~vP 203 (212)
T PF03959_consen 197 D-GGHHVP 203 (212)
T ss_dssp S-SSSS--
T ss_pred C-CCCcCc
Confidence 5 588765
No 223
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.58 E-value=2.1e-07 Score=100.16 Aligned_cols=192 Identities=16% Similarity=0.091 Sum_probs=121.3
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+.+||||.+.|+-.+++...+ .|+.......-....+..+...+.|.|.+=.-.+...+..-.+|..+...+.++
T Consensus 455 yg~sFsPd~rfLlScSED~svR--LWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi-- 530 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVR--LWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI-- 530 (707)
T ss_pred eeeeecccccceeeccCCccee--eeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh--
Confidence 6889999999999999988766 454332222222223333333444555532222333445556666666667666
Q ss_pred CCCCC-ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC
Q 004141 236 IPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 314 (771)
Q Consensus 236 ~~~~~-~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 314 (771)
..++. .++-+.|.|++.+ ++..+ ..+ .+..+|+. .+..++..+.
T Consensus 531 faghlsDV~cv~FHPNs~Y----~aTGS-------------sD~--tVRlWDv~----------------~G~~VRiF~G 575 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNY----VATGS-------------SDR--TVRLWDVS----------------TGNSVRIFTG 575 (707)
T ss_pred hcccccccceEEECCcccc----cccCC-------------CCc--eEEEEEcC----------------CCcEEEEecC
Confidence 44443 4556899999986 66544 112 45556651 4455666778
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004141 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
+.+.+.+.+|||+|++|+-.+.+ ..|.+||+.++.......+. ...+.++
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~ed-----------~~I~iWDl~~~~~v~~l~~H-------------------t~ti~Sl 625 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDED-----------GLIKIWDLANGSLVKQLKGH-------------------TGTIYSL 625 (707)
T ss_pred CCCceEEEEEcCCCceEeecccC-----------CcEEEEEcCCCcchhhhhcc-------------------cCceeEE
Confidence 88889999999999999876655 35899999887653221111 1245788
Q ss_pred ccccCCCEEEEEeeeCCeeEEEE
Q 004141 395 PWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 395 ~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
.||.||. ++++...++..++|-
T Consensus 626 sFS~dg~-vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 626 SFSRDGN-VLASGGADNSVRLWD 647 (707)
T ss_pred EEecCCC-EEEecCCCCeEEEEE
Confidence 9999998 555666667777773
No 224
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=1.1e-05 Score=76.53 Aligned_cols=150 Identities=15% Similarity=0.212 Sum_probs=91.6
Q ss_pred ccceEEEeCCC-CCeEEEEecCCCCCCeEEEEe-cC-CcceEEE-ecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 99 TGASAVVPSPS-GSKLLVVRNPENESPIQFELW-SQ-SQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
+.+...+|+|- |..||--+.. .-+.+| .. +..-... -+....... +..++|||+|+.||..+.+.
T Consensus 15 ~r~W~~awhp~~g~ilAscg~D-----k~vriw~~~~~~s~~ck~vld~~hkrs------VRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTD-----KAVRIWSTSSGDSWTCKTVLDDGHKRS------VRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred CcEEEEEeccCCceEEEeecCC-----ceEEEEecCCCCcEEEEEeccccchhe------eeeeeecCCCcEEEEeeccc
Confidence 46888999997 7655543322 255666 32 2222222 222222112 27999999999999886653
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC-CCCCccceEEEecCCCC
Q 004141 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~-~~~~~~~~~~wspDg~~ 253 (771)
...+|.-..++..-+.-+ ..+..+..++||++|..
T Consensus 84 --------------------------------------------t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~ 119 (312)
T KOG0645|consen 84 --------------------------------------------TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY 119 (312)
T ss_pred --------------------------------------------eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCE
Confidence 233333333333222101 22345778999999998
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCE
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~ 330 (771)
|+.-+ |...+|++.++ +..+. -.|.++...+....|.|.-..
T Consensus 120 ----LATCS---------------RDKSVWiWe~d----------------eddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 120 ----LATCS---------------RDKSVWIWEID----------------EDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred ----EEEee---------------CCCeEEEEEec----------------CCCcEEEEeeeccccccccEEEEcCCcce
Confidence 88877 55578888873 33443 456677777889999998776
Q ss_pred EEEEecCC
Q 004141 331 LVFLSAKS 338 (771)
Q Consensus 331 l~f~~~~~ 338 (771)
|+-.+.++
T Consensus 165 L~S~SYDn 172 (312)
T KOG0645|consen 165 LFSCSYDN 172 (312)
T ss_pred eEEeccCC
Confidence 76666654
No 225
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.57 E-value=1.2e-06 Score=84.80 Aligned_cols=169 Identities=21% Similarity=0.296 Sum_probs=102.7
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCCh--------------hhhhc--CCCC-c---
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE--------------EALQS--LPGK-V--- 592 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~--------------~~~~~--~~~~-~--- 592 (771)
...++|+|||-||-++. ..-|+...-.||++||+|.+++.|-....-. .|..- ...+ .
T Consensus 114 k~~k~PvvvFSHGLggs--Rt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLGGS--RTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCCccEEEEecccccc--hhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 36789999999996555 4468888889999999999999985322100 00000 0000 0
Q ss_pred -c----ccchhhHHHHHHHHHHc---------------------CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEe
Q 004141 593 -G----SQDVNDVLTAIDHVIDM---------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 646 (771)
Q Consensus 593 -~----~~~~~D~~~~i~~l~~~---------------------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 646 (771)
. ..-+.+|..|++-|.+- +.+|..+++++|||+||..++...+.+ ..|+++|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeeeee
Confidence 0 01145666666655431 125677899999999999998877765 45888886
Q ss_pred cCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHH
Q 004141 647 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 726 (771)
Q Consensus 647 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~ 726 (771)
... |++. ... ....+.+-|+|+|.-+ |-.- -+....
T Consensus 271 lD~---------------WM~P---------------l~~-----------~~~~~arqP~~finv~-~fQ~--~en~~v 306 (399)
T KOG3847|consen 271 LDA---------------WMFP---------------LDQ-----------LQYSQARQPTLFINVE-DFQW--NENLLV 306 (399)
T ss_pred eee---------------eecc---------------cch-----------hhhhhccCCeEEEEcc-cccc--hhHHHH
Confidence 544 2211 000 1233456788888833 2221 223344
Q ss_pred HHHHHhCCCCEEEEEeCCCCcc
Q 004141 727 ARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
.+.....+..-.++.+.|+-|.
T Consensus 307 mKki~~~n~g~~~it~~GsVHq 328 (399)
T KOG3847|consen 307 MKKIESQNEGNHVITLDGSVHQ 328 (399)
T ss_pred HHhhhCCCccceEEEEccceec
Confidence 4455554555577888888884
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.56 E-value=1.4e-06 Score=84.29 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=89.6
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004141 103 AVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
.-.|||+|++||..++.. +.+.+. .-+..++..+-..+ ..+.|+.|.-+|+.++.+
T Consensus 13 ~c~fSp~g~yiAs~~~yr-----lviRd~~tlq~~qlf~cldki----------~yieW~ads~~ilC~~yk-------- 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYR-----LVIRDSETLQLHQLFLCLDKI----------VYIEWKADSCHILCVAYK-------- 69 (447)
T ss_pred ceeECCCCCeeeeeeeeE-----EEEeccchhhHHHHHHHHHHh----------hheeeeccceeeeeeeec--------
Confidence 457999999999875432 333221 11222222221222 578899999999987543
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEE
Q 004141 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 261 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~ 261 (771)
++.+.+|++.-.+..--. -.+..+.....|||||+. |+..
T Consensus 70 -----------------------------------~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdgrh----iL~t 109 (447)
T KOG4497|consen 70 -----------------------------------DPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDGRH----ILLT 109 (447)
T ss_pred -----------------------------------cceEEEEEeecceeEEEe-ccCCCcceeeeECCCcce----Eeee
Confidence 367888988766543331 234556778899999998 8877
Q ss_pred eecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 262 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 262 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+. + . .+|-++.+ .+.....+..........+|.|||+..+..++++
T Consensus 110 se----F--------~--lriTVWSL-----------------~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 110 SE----F--------D--LRITVWSL-----------------NTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ec----c--------e--eEEEEEEe-----------------ccceeEEecccccCceeEEECCCCceeeeeeccc
Confidence 62 1 1 13444444 3444444444444557789999999998888775
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.54 E-value=1.4e-05 Score=77.54 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=62.6
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.+.-.+||+|..+++..... -.+.||+||++.-+...+..... -+..+.|.
T Consensus 320 g~g~lafs~Ds~y~aTrnd~---------~PnalW~Wdlq~l~l~avLiQk~--------------------piraf~Wd 370 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDK---------YPNALWLWDLQNLKLHAVLIQKH--------------------PIRAFEWD 370 (447)
T ss_pred ccceeeecCCceEEeeecCC---------CCceEEEEechhhhhhhhhhhcc--------------------ceeEEEeC
Confidence 46778999999877643322 24679999998755433322211 13345688
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 398 ~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
|.--+|++-. +..+||.+.+.+.....+......+....|-.+|..++....
T Consensus 371 P~~prL~vct---g~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 371 PGRPRLVVCT---GKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred CCCceEEEEc---CCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcC
Confidence 8777776543 456799988866444444443333444556667777665543
No 228
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.54 E-value=3.3e-06 Score=79.40 Aligned_cols=209 Identities=12% Similarity=0.048 Sum_probs=115.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-cceEEEecCCccccc
Q 004141 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGS 148 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 148 (771)
..+.+.+|++... +.+.-+... ++.....|||||+++++..+.+ .+-.++... +...........
T Consensus 85 ~dk~ir~wd~r~~--k~~~~i~~~-----~eni~i~wsp~g~~~~~~~kdD----~it~id~r~~~~~~~~~~~~e~--- 150 (313)
T KOG1407|consen 85 GDKTIRIWDIRSG--KCTARIETK-----GENINITWSPDGEYIAVGNKDD----RITFIDARTYKIVNEEQFKFEV--- 150 (313)
T ss_pred CCceEEEEEeccC--cEEEEeecc-----CcceEEEEcCCCCEEEEecCcc----cEEEEEecccceeehhccccee---
Confidence 4456666666333 233222222 4577899999999999875433 233444222 111111222233
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004141 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
..++|+-++. +.|..+.- +.-+|.-+. .-.
T Consensus 151 -------ne~~w~~~nd-~Fflt~Gl-----------------------------------------G~v~ILsyp-sLk 180 (313)
T KOG1407|consen 151 -------NEISWNNSND-LFFLTNGL-----------------------------------------GCVEILSYP-SLK 180 (313)
T ss_pred -------eeeeecCCCC-EEEEecCC-----------------------------------------ceEEEEecc-ccc
Confidence 3788885554 66653321 112333333 111
Q ss_pred ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc
Q 004141 229 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 308 (771)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 308 (771)
.+..| .......--+.|+|||++ ++..+- +..+-++|++ +--=
T Consensus 181 pv~si--~AH~snCicI~f~p~Gry----fA~GsA---------------DAlvSLWD~~----------------ELiC 223 (313)
T KOG1407|consen 181 PVQSI--KAHPSNCICIEFDPDGRY----FATGSA---------------DALVSLWDVD----------------ELIC 223 (313)
T ss_pred ccccc--ccCCcceEEEEECCCCce----Eeeccc---------------cceeeccChh----------------Hhhh
Confidence 22233 222333446789999999 887651 1234445541 2222
Q ss_pred ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccccc
Q 004141 309 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 388 (771)
Q Consensus 309 ~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 388 (771)
.+.++.....++..+||.||++||-.+.+. -|-+.+.++|.. +.+ .+.++
T Consensus 224 ~R~isRldwpVRTlSFS~dg~~lASaSEDh-----------~IDIA~vetGd~---------~~e---I~~~~------- 273 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFSHDGRMLASASEDH-----------FIDIAEVETGDR---------VWE---IPCEG------- 273 (313)
T ss_pred heeeccccCceEEEEeccCcceeeccCccc-----------eEEeEecccCCe---------EEE---eeccC-------
Confidence 466777788899999999999999877653 255566666553 111 11111
Q ss_pred CCCCCCccccCCCEEEEEeeeC
Q 004141 389 SSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 389 ~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
....++|.|.-..|.|+.+..
T Consensus 274 -~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 274 -PTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred -CceeEEecCCCceeeEEecCC
Confidence 235789999988777776543
No 229
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.52 E-value=1.5e-05 Score=94.36 Aligned_cols=240 Identities=14% Similarity=0.097 Sum_probs=131.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc------c--eEEEecCCcccccccCCCcccceeecCC-CCeEEE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ------L--EKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAY 169 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~g~~~~~~~~~~~~wSpD-g~~la~ 169 (771)
+.+...+|+|||+.+|...... .+.+|+... . ..+.... ....+..++|+|. ++.|+.
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~-----~I~iwd~~~~~~~~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNK-----KIKIFECESIIKDGRDIHYPVVELA--------SRSKLSGICWNSYIKSQVAS 550 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCC-----EEEEEECCcccccccccccceEEec--------ccCceeeEEeccCCCCEEEE
Confidence 4578899999999998765433 445552111 0 0011111 0112368899885 666766
Q ss_pred EecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC-CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEe
Q 004141 170 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 248 (771)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ws 248 (771)
.+.+...+ .|+............+......+.|.+ +....+++..+..|.+||+.++..... ......+..+.|+
T Consensus 551 ~~~Dg~v~--lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--~~~~~~v~~v~~~ 626 (793)
T PLN00181 551 SNFEGVVQ--VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT--IKTKANICCVQFP 626 (793)
T ss_pred EeCCCeEE--EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE--EecCCCeEEEEEe
Confidence 65554332 344322222222223334444556765 333445666778999999988765433 2223356677885
Q ss_pred -cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc--ceecCCCCccccceeec
Q 004141 249 -PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFS 325 (771)
Q Consensus 249 -pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~p~~S 325 (771)
++|+. |++.+ .+..|+++|+ .... ...+..+...+....|+
T Consensus 627 ~~~g~~----latgs---------------~dg~I~iwD~-----------------~~~~~~~~~~~~h~~~V~~v~f~ 670 (793)
T PLN00181 627 SESGRS----LAFGS---------------ADHKVYYYDL-----------------RNPKLPLCTMIGHSKTVSYVRFV 670 (793)
T ss_pred CCCCCE----EEEEe---------------CCCeEEEEEC-----------------CCCCccceEecCCCCCEEEEEEe
Confidence 56776 66654 2347888887 3322 34455566677888897
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004141 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~ 405 (771)
|++.|+..+.+. .|.+||+..+... ... ..+.. |.| +...+..++|+++++.| +
T Consensus 671 -~~~~lvs~s~D~-----------~ikiWd~~~~~~~-~~~---~~l~~--------~~g-h~~~i~~v~~s~~~~~l-a 724 (793)
T PLN00181 671 -DSSTLVSSSTDN-----------TLKLWDLSMSISG-INE---TPLHS--------FMG-HTNVKNFVGLSVSDGYI-A 724 (793)
T ss_pred -CCCEEEEEECCC-----------EEEEEeCCCCccc-cCC---cceEE--------EcC-CCCCeeEEEEcCCCCEE-E
Confidence 788877666542 4778887643210 000 00000 111 01123456799999854 5
Q ss_pred EeeeCCeeEEEE
Q 004141 406 SSIWGSSQVIIS 417 (771)
Q Consensus 406 ~~~~~~~~~l~~ 417 (771)
+.+.++...+|.
T Consensus 725 sgs~D~~v~iw~ 736 (793)
T PLN00181 725 TGSETNEVFVYH 736 (793)
T ss_pred EEeCCCEEEEEE
Confidence 555566555654
No 230
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.51 E-value=2.7e-05 Score=78.24 Aligned_cols=237 Identities=16% Similarity=0.187 Sum_probs=135.5
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeec-CCCCeEEEEecCCCCCCCC
Q 004141 102 SAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN-SDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wS-pDg~~la~~~~~~~~~~~~ 180 (771)
..|+|.+....|.|+.-. ..+++.++..+....++..+. . .+..+. +||+ |++..
T Consensus 3 Egp~~d~~~g~l~~~D~~---~~~i~~~~~~~~~~~~~~~~~-~----------~G~~~~~~~g~-l~v~~--------- 58 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIP---GGRIYRVDPDTGEVEVIDLPG-P----------NGMAFDRPDGR-LYVAD--------- 58 (246)
T ss_dssp EEEEEETTTTEEEEEETT---TTEEEEEETTTTEEEEEESSS-E----------EEEEEECTTSE-EEEEE---------
T ss_pred cceEEECCCCEEEEEEcC---CCEEEEEECCCCeEEEEecCC-C----------ceEEEEccCCE-EEEEE---------
Confidence 368999977777776432 346888885455555555544 2 366777 6754 44432
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC----CCCccceEEEecCCCCCcc
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP----KSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~----~~~~~~~~~wspDg~~~~~ 256 (771)
...+.++|+.+++++.+...+ .......+++.|||+
T Consensus 59 ------------------------------------~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~---- 98 (246)
T PF08450_consen 59 ------------------------------------SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN---- 98 (246)
T ss_dssp ------------------------------------TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-----
T ss_pred ------------------------------------cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC----
Confidence 134456688888877763111 234567889999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+|+........ ......||+++. + ++.+.+..........+|||||+.|++...
T Consensus 99 -ly~t~~~~~~~~------~~~~g~v~~~~~-----------------~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 99 -LYVTDSGGGGAS------GIDPGSVYRIDP-----------------D-GKVTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp -EEEEEECCBCTT------CGGSEEEEEEET-----------------T-SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred -EEEEecCCCccc------cccccceEEECC-----------------C-CeEEEEecCcccccceEECCcchheeeccc
Confidence 777653221100 000157999996 4 566666555555678999999999887665
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
.. .+|++++++..... +.. ...+.+ ......+ +..++...+|+ |+++.. +...|+
T Consensus 154 ~~----------~~i~~~~~~~~~~~-~~~-~~~~~~---~~~~~g~-------pDG~~vD~~G~-l~va~~--~~~~I~ 208 (246)
T PF08450_consen 154 FN----------GRIWRFDLDADGGE-LSN-RRVFID---FPGGPGY-------PDGLAVDSDGN-LWVADW--GGGRIV 208 (246)
T ss_dssp TT----------TEEEEEEEETTTCC-EEE-EEEEEE----SSSSCE-------EEEEEEBTTS--EEEEEE--TTTEEE
T ss_pred cc----------ceeEEEeccccccc-eee-eeeEEE---cCCCCcC-------CCcceEcCCCC-EEEEEc--CCCEEE
Confidence 43 56999998654431 110 000111 0000001 23567777886 554432 345788
Q ss_pred EEECCCCcEEEecCCCCCceeeEEe-ecCCEEEEEEe
Q 004141 417 SVNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSS 452 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~s-~dg~~l~~~~~ 452 (771)
+++.++..+..+..+........|. ++.+.|+++.+
T Consensus 209 ~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 209 VFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 8898733344555443345556774 57788887654
No 231
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.50 E-value=7.7e-06 Score=78.23 Aligned_cols=225 Identities=12% Similarity=0.085 Sum_probs=142.9
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC------c
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG------E 229 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~------~ 229 (771)
....|++|.++|+..+.++.. -.|+.-...+....+-...|.-...|+|...-...+.-++.--++++.+. .
T Consensus 59 ~~~~ws~Dsr~ivSaSqDGkl--IvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 59 YAMDWSTDSRRIVSASQDGKL--IVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred eeeEecCCcCeEEeeccCCeE--EEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 678899999999888766532 34665556666666677888888888888544444444556666676543 1
Q ss_pred e-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-
Q 004141 230 V-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL- 307 (771)
Q Consensus 230 ~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~- 307 (771)
+ +.+ .........-.|-+|+. |+..+ .+...-++|+ ++|
T Consensus 137 v~r~l--~gHtgylScC~f~dD~~-----ilT~S---------------GD~TCalWDi-----------------e~g~ 177 (343)
T KOG0286|consen 137 VSREL--AGHTGYLSCCRFLDDNH-----ILTGS---------------GDMTCALWDI-----------------ETGQ 177 (343)
T ss_pred eeeee--cCccceeEEEEEcCCCc-----eEecC---------------CCceEEEEEc-----------------ccce
Confidence 2 223 22333455667877776 66655 3345666777 445
Q ss_pred cceecCCCCccccceeecC-CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccc
Q 004141 308 PVVNLTESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 386 (771)
Q Consensus 308 ~~~~lt~~~~~~~~p~~Sp-DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 386 (771)
....+..+.+.+.+..++| |+++++-.+-+ ..-++||+..+...+. |+|
T Consensus 178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD-----------~~aklWD~R~~~c~qt------------------F~g- 227 (343)
T KOG0286|consen 178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD-----------KSAKLWDVRSGQCVQT------------------FEG- 227 (343)
T ss_pred EEEEecCCcccEEEEecCCCCCCeEEecccc-----------cceeeeeccCcceeEe------------------ecc-
Confidence 4566777888899999999 99986644433 2467788877655332 332
Q ss_pred ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC--CCceeeEEeecCCEEEEEEeC
Q 004141 387 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 387 ~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~--~~~~~~~~s~dg~~l~~~~~~ 453 (771)
+...+..++|-|+|..+ .+.+.++..+||-+.. ..++....... ..+....||..|+.|++-+.+
T Consensus 228 hesDINsv~ffP~G~af-atGSDD~tcRlyDlRa-D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 228 HESDINSVRFFPSGDAF-ATGSDDATCRLYDLRA-DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred cccccceEEEccCCCee-eecCCCceeEEEeecC-CcEEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence 22346788999999744 5666677778885543 23333333222 245667899999877765543
No 232
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=4.4e-05 Score=79.33 Aligned_cols=294 Identities=14% Similarity=0.112 Sum_probs=158.3
Q ss_pred CCCCcceEE-EEEeechhhccc-ceeEEEEEEeecCCCCccceeecCCcc--cc-ccceEEEeCCCCCeEEEEecCCCCC
Q 004141 49 GNGNGTQAM-FSISQPNLLANK-RKKFMLSTVISKENENSVTFQWAPFPV--EM-TGASAVVPSPSGSKLLVVRNPENES 123 (771)
Q Consensus 49 ~s~dg~~v~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lt~~~~~~--~~-~~~~~~~~SPdG~~la~~~~~~~~~ 123 (771)
.||.-++|+ |+......+.++ ....+..||+.++- ..+ .|+. +. .--....||-|++++|=+....
T Consensus 257 fSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~-lkr-----sF~~~~~~~~~WP~frWS~DdKy~Arm~~~s--- 327 (698)
T KOG2314|consen 257 FSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL-LKR-----SFPVIKSPYLKWPIFRWSHDDKYFARMTGNS--- 327 (698)
T ss_pred cCCccceEEEecCCccccCcccCCCceEEEEEccccc-hhc-----ceeccCCCccccceEEeccCCceeEEeccce---
Confidence 356666544 444322222111 23567778885442 111 1221 11 1123478999999998664321
Q ss_pred CeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004141 124 PIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
-.+|+ . .. -.+.+. +-.+. .+..++|||-+..|||.......
T Consensus 328 isIyE--t-ps-f~lld~Kslki~-------gIr~FswsP~~~llAYwtpe~~~-------------------------- 370 (698)
T KOG2314|consen 328 ISIYE--T-PS-FMLLDKKSLKIS-------GIRDFSWSPTSNLLAYWTPETNN-------------------------- 370 (698)
T ss_pred EEEEe--c-Cc-eeeecccccCCc-------cccCcccCCCcceEEEEcccccC--------------------------
Confidence 12222 1 11 112221 11121 12589999999999997654321
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCccee-eeeeeeccCCce
Q 004141 203 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK-LGIKYCYNRPCA 281 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~-~g~~~~~~~~~~ 281 (771)
....+-++.+.++...+.. --.+.....+.|-..|++ |.|-..+....+ .|.. .+-+
T Consensus 371 -------------~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdy----LcvkvdR~tK~~~~g~f----~n~e 428 (698)
T KOG2314|consen 371 -------------IPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDY----LCVKVDRHTKSKVKGQF----SNLE 428 (698)
T ss_pred -------------CcceEEEEecCccceeeec-cceeeeccEEEeccCCcE----EEEEEEeeccccccceE----eeEE
Confidence 1134455555555443331 112335567899999998 988776554332 2222 1236
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 282 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
|++++= ..-.. ...+-...+...+|-|.|.+++.++.... ...+-.+...+...
T Consensus 429 Ifrire-----------------KdIpv-e~velke~vi~FaWEP~gdkF~vi~g~~~--------k~tvsfY~~e~~~~ 482 (698)
T KOG2314|consen 429 IFRIRE-----------------KDIPV-EVVELKESVIAFAWEPHGDKFAVISGNTV--------KNTVSFYAVETNIK 482 (698)
T ss_pred EEEeec-----------------cCCCc-eeeecchheeeeeeccCCCeEEEEEcccc--------ccceeEEEeecCCC
Confidence 776652 11111 11122345678899999999999987652 23344444443111
Q ss_pred -CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeeE
Q 004141 362 -FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSL 439 (771)
Q Consensus 362 -~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~ 439 (771)
-.+.... +. .....+.|||.|+.+++.+-......|+-+|++-...+.+.... ......-
T Consensus 483 ~~~lVk~~---------------dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~ve 544 (698)
T KOG2314|consen 483 KPSLVKEL---------------DK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVE 544 (698)
T ss_pred chhhhhhh---------------cc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccce
Confidence 1111110 00 12346789999998888776655667888887644444443222 2345567
Q ss_pred EeecCCEEEEEEeCC
Q 004141 440 LTLDGDNIIAVSSSP 454 (771)
Q Consensus 440 ~s~dg~~l~~~~~~~ 454 (771)
|+|.|++++...+..
T Consensus 545 WDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 545 WDPTGRYVVTSSSSW 559 (698)
T ss_pred ECCCCCEEEEeeehh
Confidence 899999998777655
No 233
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.50 E-value=1.9e-06 Score=89.49 Aligned_cols=248 Identities=14% Similarity=0.117 Sum_probs=132.6
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCC-----CChhhhhcCCCCcc
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG-----FGEEALQSLPGKVG 593 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~-----~g~~~~~~~~~~~~ 593 (771)
..+.+.++.|+.....++.|.+++.||...... ........++..++.++..+....++ +|............
T Consensus 31 ~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 108 (299)
T COG1073 31 IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKE--QSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFS 108 (299)
T ss_pred ceeeeEEEecCCCCccccCceEEeccCcccccc--CcchHHHHhhhceeEEeeeccccccccccccccccCccccccccc
Confidence 567888998886544478999999999665532 22226777888899988887511100 01000000000000
Q ss_pred -ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC---ceeEEEecCCccchhhhhcCCC----CC--
Q 004141 594 -SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVGTTD----IP-- 663 (771)
Q Consensus 594 -~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~p~~~~~~~~~~~~----~~-- 663 (771)
..........+..-........++....|.+.|+..+..++...+. ..+.++...+.-.......... ..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~~~~~ 188 (299)
T COG1073 109 AAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPELAREL 188 (299)
T ss_pred hhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHHHHhh
Confidence 0000000000000000111223678888888888888877776542 2222222211111000000000 00
Q ss_pred -cchhhhh-ccCC-CCccCCCCCChhhHHHHhhcCcccccCCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004141 664 -DWCYVES-YGSK-GKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 664 -~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
+...... +... ............ ...+...++...+.++. +|+|++||.+|..||..++..++...+.. +.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~ 265 (299)
T COG1073 189 IDYLITPGGFAPLPAPEAPLDTLPLR-AVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--PKKL 265 (299)
T ss_pred hhhhccCCCCCCCCcccccccccccc-hhhhccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC--CceE
Confidence 0000000 0000 000000111111 23355566667777777 69999999999999999999999988775 6788
Q ss_pred EEeCCCCccCCCCCCh--HHHHHHHHHHHHHhhC
Q 004141 740 IVFPNDVHGIERPQSD--FESFLNIGLWFKKYCK 771 (771)
Q Consensus 740 ~~~~~~~H~~~~~~~~--~~~~~~i~~fl~~~L~ 771 (771)
+.+++++|........ .+.+..+.+||.++|.
T Consensus 266 ~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l~ 299 (299)
T COG1073 266 LFVPGGGHIDLYDNPPAVEQALDKLAEFLERHLL 299 (299)
T ss_pred EEecCCccccccCccHHHHHHHHHHHHHHHHhcC
Confidence 8899999987643333 3789999999999874
No 234
>PRK10115 protease 2; Provisional
Probab=98.49 E-value=3.1e-05 Score=88.95 Aligned_cols=208 Identities=14% Similarity=0.113 Sum_probs=120.4
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--ee
Q 004141 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QA 232 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~ 232 (771)
+..+.|||||++|+|..+.. +....+|+++|+.+|+. ..
T Consensus 129 l~~~~~Spdg~~la~~~d~~---------------------------------------G~E~~~l~v~d~~tg~~l~~~ 169 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFL---------------------------------------SRRQYGIRFRNLETGNWYPEL 169 (686)
T ss_pred EeEEEECCCCCEEEEEecCC---------------------------------------CcEEEEEEEEECCCCCCCCcc
Confidence 35789999999999985543 22457999999998873 33
Q ss_pred ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC--cce
Q 004141 233 VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVV 310 (771)
Q Consensus 233 l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 310 (771)
+ +. . ...++|++||+. |+|+..... ..++.+||++++ .++ +.+
T Consensus 170 i---~~-~-~~~~~w~~D~~~----~~y~~~~~~---------~~~~~~v~~h~l-----------------gt~~~~d~ 214 (686)
T PRK10115 170 L---DN-V-EPSFVWANDSWT----FYYVRKHPV---------TLLPYQVWRHTI-----------------GTPASQDE 214 (686)
T ss_pred c---cC-c-ceEEEEeeCCCE----EEEEEecCC---------CCCCCEEEEEEC-----------------CCChhHCe
Confidence 3 11 1 246899999999 999886321 114468999998 555 344
Q ss_pred ecCCCC-cccc-ceeecCCCCEEEEEecCCCCCCCCccccccceeeec--CCCCCCCCccceeeEEecccccCCCCCccc
Q 004141 311 NLTESI-SSAF-FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW--PTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 386 (771)
Q Consensus 311 ~lt~~~-~~~~-~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 386 (771)
.|.... .... +...|.||++++..+... ..+.+++++. .+++...+. ....+..
T Consensus 215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--------~~~~~~l~~~~~~~~~~~~~~----------~~~~~~~---- 272 (686)
T PRK10115 215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASA--------TTSEVLLLDAELADAEPFVFL----------PRRKDHE---- 272 (686)
T ss_pred EEEeeCCCCEEEEEEEcCCCCEEEEEEECC--------ccccEEEEECcCCCCCceEEE----------ECCCCCE----
Confidence 454332 2122 333455999987555443 2356777764 222221111 1111110
Q ss_pred ccCCCCCCccccCCCEEEEEeeeC-CeeEEEEEECC-CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004141 387 YSSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 387 ~~~~~~~~~~s~Dg~~l~~~~~~~-~~~~l~~~d~~-tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~ 464 (771)
| .....+..+++.++.+ ....|+.+++. .++.+.+...........+...++.|++....... +++++++
T Consensus 273 ~-------~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~-~~l~~~~ 344 (686)
T PRK10115 273 Y-------SLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGL-TSLRQIN 344 (686)
T ss_pred E-------EEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCE-EEEEEEc
Confidence 1 1112235677777653 45578888887 46666666553322333445557777777655444 4466666
Q ss_pred ec
Q 004141 465 FV 466 (771)
Q Consensus 465 ~~ 466 (771)
..
T Consensus 345 ~~ 346 (686)
T PRK10115 345 RK 346 (686)
T ss_pred CC
Confidence 43
No 235
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=3e-05 Score=80.50 Aligned_cols=250 Identities=13% Similarity=0.158 Sum_probs=141.1
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
+..+.|||-|.+|+..-..+ ..+|-+..-.++-.. ..++ ..+.|||++++|+.-+..+...
T Consensus 213 etyv~wSP~GTYL~t~Hk~G------I~lWGG~~f~r~~RF~Hp~V----------q~idfSP~EkYLVT~s~~p~~~-- 274 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG------IALWGGESFDRIQRFYHPGV----------QFIDFSPNEKYLVTYSPEPIIV-- 274 (698)
T ss_pred eeeEEecCCceEEEEEeccc------eeeecCccHHHHHhccCCCc----------eeeecCCccceEEEecCCcccc--
Confidence 56789999999998776655 556754433333222 1233 4788999999998765443211
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCc--cceEEEecCCCCCccE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS--VGQVVWAPLNEGLHQY 257 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~--~~~~~wspDg~~~~~~ 257 (771)
+|+ .....+|++||+.+|...+--.+..... -.-+.||.|+|.
T Consensus 275 ---------------------------~~~----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy---- 319 (698)
T KOG2314|consen 275 ---------------------------EED----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY---- 319 (698)
T ss_pred ---------------------------Ccc----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCce----
Confidence 011 1134799999999998766521221211 124689999998
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++-..- ..|-+++.+ +-. ...-+-....+....|||-+.-|||-..
T Consensus 320 ~Arm~~----------------~sisIyEtp-----------------sf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 320 FARMTG----------------NSISIYETP-----------------SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred eEEecc----------------ceEEEEecC-----------------ceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 776541 134444321 000 0000112235778999999999999887
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC-----
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS----- 411 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~----- 411 (771)
... +...++-++.+.+....+. ..+..+ +.-.+.|-.+|++|.+...+..
T Consensus 367 e~~------~~parvtL~evPs~~~iRt----~nlfnV---------------sDckLhWQk~gdyLcvkvdR~tK~~~~ 421 (698)
T KOG2314|consen 367 ETN------NIPARVTLMEVPSKREIRT----KNLFNV---------------SDCKLHWQKSGDYLCVKVDRHTKSKVK 421 (698)
T ss_pred ccc------CCcceEEEEecCccceeee----ccceee---------------eccEEEeccCCcEEEEEEEeecccccc
Confidence 652 2234566666666544221 111111 1224569999999998876432
Q ss_pred ----eeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEE-eCCCCCCeEEE
Q 004141 412 ----SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS-SSPVDVPQVKY 462 (771)
Q Consensus 412 ----~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~-~~~~~p~~l~~ 462 (771)
+..|++++-..=-+..+.-.. .+-...|.|.|+.++... +......++|-
T Consensus 422 g~f~n~eIfrireKdIpve~velke-~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~ 476 (698)
T KOG2314|consen 422 GQFSNLEIFRIREKDIPVEVVELKE-SVIAFAWEPHGDKFAVISGNTVKNTVSFYA 476 (698)
T ss_pred ceEeeEEEEEeeccCCCceeeecch-heeeeeeccCCCeEEEEEccccccceeEEE
Confidence 224666654322233332222 234457889998876554 33333333443
No 236
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.48 E-value=4e-06 Score=77.86 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC--C------CceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004141 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--P------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p------~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
+....+|+.+++..| +|+|+|.|+.++.++++.. . ..|+.+|+++++.....
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~---------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK---------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc----------------
Confidence 334446777787676 7999999999999998721 1 13677787777632100
Q ss_pred cCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004141 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
. . .-..+...+++|.|-+.|+.|.++|...+..|++.+.++ .++..| +||.+..
T Consensus 152 -----------~--~--------~~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a----~vl~Hp-ggH~VP~ 205 (230)
T KOG2551|consen 152 -----------K--L--------DESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA----TVLEHP-GGHIVPN 205 (230)
T ss_pred -----------h--h--------hhhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC----eEEecC-CCccCCC
Confidence 0 0 001223467899999999999999999999999998874 455554 5897754
Q ss_pred CCChHHHHHHHHHHHHHhh
Q 004141 752 PQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 752 ~~~~~~~~~~i~~fl~~~L 770 (771)
.. ...+.+.+||...+
T Consensus 206 ~~---~~~~~i~~fi~~~~ 221 (230)
T KOG2551|consen 206 KA---KYKEKIADFIQSFL 221 (230)
T ss_pred ch---HHHHHHHHHHHHHH
Confidence 33 66788999988654
No 237
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.48 E-value=2.2e-05 Score=77.39 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=126.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+.+|+...+|.-. +++...+|.+..+...-.++.....+ .+..||.||.+||...
T Consensus 65 ~svFavsl~P~~~l~aTGG--gDD~AflW~~~~ge~~~eltgHKDSV----------t~~~FshdgtlLATGd------- 125 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGG--GDDLAFLWDISTGEFAGELTGHKDSV----------TCCSFSHDGTLLATGD------- 125 (399)
T ss_pred CceEEEEeCCCCceEEecC--CCceEEEEEccCCcceeEecCCCCce----------EEEEEccCceEEEecC-------
Confidence 5688899999666555321 11333344444333323333322233 5899999999888731
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~ 257 (771)
-...|.++...+|..+.. +. .-..+.-..|.|-+..
T Consensus 126 -------------------------------------msG~v~v~~~stg~~~~~--~~~e~~dieWl~WHp~a~i---- 162 (399)
T KOG0296|consen 126 -------------------------------------MSGKVLVFKVSTGGEQWK--LDQEVEDIEWLKWHPRAHI---- 162 (399)
T ss_pred -------------------------------------CCccEEEEEcccCceEEE--eecccCceEEEEecccccE----
Confidence 346789999988877665 33 2234667789998774
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|++.+ ..+.||.+.++ +.+..+.+..+...+..-.|+||||+|+-...+
T Consensus 163 llAG~---------------~DGsvWmw~ip----------------~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 163 LLAGS---------------TDGSVWMWQIP----------------SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEeec---------------CCCcEEEEECC----------------CcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 44443 34579999983 336667777777778888999999999877655
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
. .|.+||+.++..... +.+.. .. -.+-..++.++..+ +..+.++ ..+.
T Consensus 212 g-----------ti~~Wn~ktg~p~~~---------~~~~e---~~------~~~~~~~~~~~~~~-~~g~~e~--~~~~ 259 (399)
T KOG0296|consen 212 G-----------TIIVWNPKTGQPLHK---------ITQAE---GL------ELPCISLNLAGSTL-TKGNSEG--VACG 259 (399)
T ss_pred c-----------eEEEEecCCCceeEE---------ecccc---cC------cCCcccccccccee-EeccCCc--cEEE
Confidence 3 489999999865221 11111 00 01233455566533 4443333 3555
Q ss_pred EECCCCcEEEecC
Q 004141 418 VNVSSGELLRITP 430 (771)
Q Consensus 418 ~d~~tg~~~~l~~ 430 (771)
++..+|++.....
T Consensus 260 ~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 260 VNNGSGKVVNCNN 272 (399)
T ss_pred EccccceEEEecC
Confidence 5666777776655
No 238
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.47 E-value=2.7e-06 Score=86.66 Aligned_cols=221 Identities=16% Similarity=0.158 Sum_probs=136.0
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.+++...|.| .|..|+ +..-+..-.+|.+++.+...+.... ...+ ..++||+||+.++..+.+
T Consensus 215 kgvsai~~fp~~~hLlL--S~gmD~~vklW~vy~~~~~lrtf~gH~k~V----------rd~~~s~~g~~fLS~sfD--- 279 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLL--SGGMDGLVKLWNVYDDRRCLRTFKGHRKPV----------RDASFNNCGTSFLSASFD--- 279 (503)
T ss_pred cccchhhhccceeeEEE--ecCCCceEEEEEEecCcceehhhhcchhhh----------hhhhccccCCeeeeeecc---
Confidence 5688899999 555443 3332355567777754444333322 2223 689999999999887544
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..|-+||+++|++..- ...+..+.-+.+.||+..
T Consensus 280 -----------------------------------------~~lKlwDtETG~~~~~--f~~~~~~~cvkf~pd~~n--- 313 (503)
T KOG0282|consen 280 -----------------------------------------RFLKLWDTETGQVLSR--FHLDKVPTCVKFHPDNQN--- 313 (503)
T ss_pred -----------------------------------------eeeeeeccccceEEEE--EecCCCceeeecCCCCCc---
Confidence 4678899999987665 344445677889999977
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-CCCCccccceeecCCCCEEEEEe
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
+++++- -+..|..+|+ .+++..+- -.+.+.+....|=++|++++..+
T Consensus 314 -~fl~G~--------------sd~ki~~wDi-----------------Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 314 -IFLVGG--------------SDKKIRQWDI-----------------RSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred -EEEEec--------------CCCcEEEEec-----------------cchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 887762 3347999998 66765443 23456788899999999877766
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccc----------------------ee------eEEecccccCCCCCcccc
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK----------------------IV------DVIPVVQCAEGDCFPGLY 387 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~----------------------~~------~~~~~~~~~~~~~f~g~~ 387 (771)
.+. .+.+|++...-....... .+ .+.+.....+...|.|..
T Consensus 362 Ddk-----------s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 362 DDK-----------SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred cCc-----------cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 553 244555444332211000 00 112222223334566655
Q ss_pred cCCC-CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004141 388 SSSI-LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 388 ~~~~-~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
..+. -.+.|||||++| ++.+ +...++.+|.+|-++.
T Consensus 431 vaGys~~v~fSpDG~~l-~SGd--sdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTL-CSGD--SDGKVNFWDWKTTKLV 467 (503)
T ss_pred ccCceeeEEEcCCCCeE-Eeec--CCccEEEeechhhhhh
Confidence 4443 367899999966 4443 3445666676665544
No 239
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.44 E-value=6.8e-05 Score=74.64 Aligned_cols=236 Identities=16% Similarity=0.169 Sum_probs=132.1
Q ss_pred cceEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 100 GASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..-.++.+| ++.-++|.+..+ ...+.++ .+++..+.+..+.+-| -++--.|||||++| |+.|...
T Consensus 6 RgH~~a~~p~~~~avafaRRPG---~~~~v~D~~~g~~~~~~~a~~gRH-------FyGHg~fs~dG~~L-ytTEnd~-- 72 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG---TFALVFDCRTGQLLQRLWAPPGRH-------FYGHGVFSPDGRLL-YTTENDY-- 72 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC---cEEEEEEcCCCceeeEEcCCCCCE-------EecCEEEcCCCCEE-EEecccc--
Confidence 345678899 555555554433 3455556 5666665555444443 12467899999966 4444331
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC-CCCCCccceEEEecCCCCCcc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~-~~~~~~~~~~~wspDg~~~~~ 256 (771)
..++..|-|||... ..+++.. ....+..-++.|.|||+.
T Consensus 73 ------------------------------------~~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~t--- 112 (305)
T PF07433_consen 73 ------------------------------------ETGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGET--- 112 (305)
T ss_pred ------------------------------------CCCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCE---
Confidence 12568899999983 3444421 233456678899999987
Q ss_pred EEEEEeecC---c----ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-ee--cCC--CCccccceee
Q 004141 257 YLVFVGWSS---E----TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN--LTE--SISSAFFPRF 324 (771)
Q Consensus 257 ~l~~~~~~~---~----~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~--lt~--~~~~~~~p~~ 324 (771)
|+.. |-. . ..++.+ .... ..|.++|. .+|++ .+ |.. +..+++..++
T Consensus 113 -LvVA-NGGI~Thpd~GR~kLNl--~tM~-psL~~ld~-----------------~sG~ll~q~~Lp~~~~~lSiRHLa~ 170 (305)
T PF07433_consen 113 -LVVA-NGGIETHPDSGRAKLNL--DTMQ-PSLVYLDA-----------------RSGALLEQVELPPDLHQLSIRHLAV 170 (305)
T ss_pred -EEEE-cCCCccCcccCceecCh--hhcC-CceEEEec-----------------CCCceeeeeecCccccccceeeEEe
Confidence 7764 311 1 112211 1122 35777876 66653 33 533 4457999999
Q ss_pred cCCCCEEEEEecCCCCCCCCcccccc-ceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004141 325 SPDGKFLVFLSAKSSVDSGAHSATDS-LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 325 SpDG~~l~f~~~~~~~~~g~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l 403 (771)
++||.- +|..+-. |+.....- |.+. ..++..++....... ...+. ..+.++++++||..+
T Consensus 171 ~~~G~V-~~a~Q~q----g~~~~~~PLva~~--~~g~~~~~~~~p~~~--------~~~l~----~Y~gSIa~~~~g~~i 231 (305)
T PF07433_consen 171 DGDGTV-AFAMQYQ----GDPGDAPPLVALH--RRGGALRLLPAPEEQ--------WRRLN----GYIGSIAADRDGRLI 231 (305)
T ss_pred cCCCcE-EEEEecC----CCCCccCCeEEEE--cCCCcceeccCChHH--------HHhhC----CceEEEEEeCCCCEE
Confidence 999984 4444333 32222222 2222 222322111111000 00111 134578899999988
Q ss_pred EEEeeeCCeeEEEEEECCCCcEEEecCC
Q 004141 404 LLSSIWGSSQVIISVNVSSGELLRITPA 431 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~~tg~~~~l~~~ 431 (771)
++++...+...+| |..+|++.....-
T Consensus 232 a~tsPrGg~~~~~--d~~tg~~~~~~~l 257 (305)
T PF07433_consen 232 AVTSPRGGRVAVW--DAATGRLLGSVPL 257 (305)
T ss_pred EEECCCCCEEEEE--ECCCCCEeecccc
Confidence 8888777766666 8889988766543
No 240
>PRK04940 hypothetical protein; Provisional
Probab=98.42 E-value=4.3e-06 Score=76.68 Aligned_cols=119 Identities=10% Similarity=0.104 Sum_probs=73.9
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcC
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 695 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (771)
++++|+|.|+||+.|.+++.++. + .+|+++|.+....... ...+. ... +. .-.......+..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~----------~~ig~-~~~-y~-~~~~~h~~eL~~-- 121 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENME----------GKIDR-PEE-YA-DIATKCVTNFRE-- 121 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHH----------HHhCC-Ccc-hh-hhhHHHHHHhhh--
Confidence 46999999999999999999874 3 4567788875432110 00111 000 11 001111122220
Q ss_pred cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 696 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 696 p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+-.-..+++..+.|++.+..++.+.+... .+..+.+|++|.|... .+.+..|++|++
T Consensus 122 ------~~p~r~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~~f---e~~l~~I~~F~~ 178 (180)
T PRK04940 122 ------KNRDRCLVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFKNI---SPHLQRIKAFKT 178 (180)
T ss_pred ------cCcccEEEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCCCH---HHHHHHHHHHHh
Confidence 11234699999999999887776655432 2577899999988643 357888999985
No 241
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.39 E-value=1e-06 Score=86.06 Aligned_cols=178 Identities=16% Similarity=0.243 Sum_probs=107.2
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..||.++...++.-.+...+...-+||++-|..+-... ..+.-=++.||.|+.+|.+| ++.+.. .+ +..
T Consensus 221 s~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEv----G~m~tP~~lgYsvLGwNhPG---FagSTG--~P--~p~ 289 (517)
T KOG1553|consen 221 SSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEV----GVMNTPAQLGYSVLGWNHPG---FAGSTG--LP--YPV 289 (517)
T ss_pred ecCCcchhheeecCCCCCCCCCceEEEEecCCccceEe----eeecChHHhCceeeccCCCC---ccccCC--CC--Ccc
Confidence 44566777766654322233445678888884432111 11222357899999999998 444321 11 223
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
++.+.+.+.+++.++.-....+.|.++|+|.||+.++++|..+|+ ++++|+.+.+-|+..+.- ...+.. +..
T Consensus 290 n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLAl-~rMP~~-----~~g- 361 (517)
T KOG1553|consen 290 NTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLAL-FRMPTF-----FSG- 361 (517)
T ss_pred cchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHHh-hhchHH-----HHH-
Confidence 445666677888888766778999999999999999999999997 789998877655433211 111110 000
Q ss_pred CCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccC
Q 004141 675 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp 719 (771)
. -..........+-...+.+.+.|+++|--.+|+++.
T Consensus 362 -------i-V~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 362 -------I-VEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred -------H-HHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 0 001112222333334455667788888877777754
No 242
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.2e-05 Score=83.21 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=147.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
-+.....|| ....+|+.... .+|+-. ..+....+.+.. .. ...+.|+++|++||...
T Consensus 178 fY~nlldWs-s~n~laValg~-----~vylW~~~s~~v~~l~~~~~~~----------vtSv~ws~~G~~LavG~----- 236 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALGQ-----SVYLWSASSGSVTELCSFGEEL----------VTSVKWSPDGSHLAVGT----- 236 (484)
T ss_pred HhhhHhhcc-cCCeEEEEecc-----eEEEEecCCCceEEeEecCCCc----------eEEEEECCCCCEEEEee-----
Confidence 345667899 45566654332 255333 455656666653 22 26999999999999853
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
....+.+||....+-.+-........++..+|. +.
T Consensus 237 ---------------------------------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~---- 271 (484)
T KOG0305|consen 237 ---------------------------------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SS---- 271 (484)
T ss_pred ---------------------------------------cCCeEEEEehhhccccccccCCcCceeEEEecc--Cc----
Confidence 346889999876654333112245678899998 22
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-ecCCCCccccceeecCCCCEEEEEe
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
++-.+ .+...|..+|+. ...... .+..+...+-...|++||+++|-..
T Consensus 272 -~lssG--------------sr~~~I~~~dvR----------------~~~~~~~~~~~H~qeVCgLkws~d~~~lASGg 320 (484)
T KOG0305|consen 272 -VLSSG--------------SRDGKILNHDVR----------------ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGG 320 (484)
T ss_pred -eEEEe--------------cCCCcEEEEEEe----------------cchhhhhhhhcccceeeeeEECCCCCeeccCC
Confidence 44333 234467777762 111222 2556666788899999999988555
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
++ +.+++||....+.+....+.. ..+..++|+|=-+-|+.+........|
T Consensus 321 nD-----------N~~~Iwd~~~~~p~~~~~~H~-------------------aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 321 ND-----------NVVFIWDGLSPEPKFTFTEHT-------------------AAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred Cc-----------cceEeccCCCccccEEEeccc-------------------eeeeEeeeCCCccCceEEcCCCcccEE
Confidence 44 458888874433321111111 123456788876668777654445567
Q ss_pred EEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004141 416 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 416 ~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 465 (771)
..+|..+|+...-......+....|++..+.|+.+.-.+.. +|-+.+.
T Consensus 371 ~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n--~i~lw~~ 418 (484)
T KOG0305|consen 371 KFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSEN--QITLWKY 418 (484)
T ss_pred EEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCC--cEEEEec
Confidence 77788888877766666678888999999998876643333 3444333
No 243
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.37 E-value=0.00035 Score=70.45 Aligned_cols=264 Identities=15% Similarity=0.133 Sum_probs=142.3
Q ss_pred cceEEEeCCCCCeEEEEec-----CCCCCCeEEEEecCCcc--eEEEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004141 100 GASAVVPSPSGSKLLVVRN-----PENESPIQFELWSQSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
-......||||+.++.... ..+++.+++.+|+...+ ...+.++.....-+ --.-..+..|+|||++++-.-
T Consensus 37 ~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~--~~~~~~~~ls~dgk~~~V~N~ 114 (342)
T PF06433_consen 37 FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV--VPYKNMFALSADGKFLYVQNF 114 (342)
T ss_dssp SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B--S--GGGEEE-TTSSEEEEEEE
T ss_pred cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee--cccccceEEccCCcEEEEEcc
Confidence 3556788999999975432 23467789999965544 44445554311000 001247789999998876422
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
. ....+-|+|++.+++..- ++-..|..-+-+.++
T Consensus 115 T------------------------------------------Pa~SVtVVDl~~~kvv~e--i~~PGC~~iyP~~~~-- 148 (342)
T PF06433_consen 115 T------------------------------------------PATSVTVVDLAAKKVVGE--IDTPGCWLIYPSGNR-- 148 (342)
T ss_dssp S------------------------------------------SSEEEEEEETTTTEEEEE--EEGTSEEEEEEEETT--
T ss_pred C------------------------------------------CCCeEEEEECCCCceeee--ecCCCEEEEEecCCC--
Confidence 2 237899999999987655 233333222222222
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-ecC---C--CCccccceeecC
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLT---E--SISSAFFPRFSP 326 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~lt---~--~~~~~~~p~~Sp 326 (771)
+ +. + .|. ++.+..+.++ +.|+.. +.+ . ...-...|.++.
T Consensus 149 ~----F~--~-----------lC~--DGsl~~v~Ld----------------~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 149 G----FS--M-----------LCG--DGSLLTVTLD----------------ADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp E----EE--E-----------EET--TSCEEEEEET----------------STSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred c----eE--E-----------Eec--CCceEEEEEC----------------CCCCEeEeeccccCCCCcccccccceEC
Confidence 1 22 1 253 3356666663 233322 211 1 112245677888
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc--CCCCCcccccCCCCCCccccCCCEEE
Q 004141 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~g~~~~~~~~~~~s~Dg~~l~ 404 (771)
++.+++|.+... .+|..|+.+.+.... ....++... .++-.|| +....++.+..++||
T Consensus 194 ~~~~~~F~Sy~G-----------~v~~~dlsg~~~~~~-----~~~~~~t~~e~~~~WrPG----G~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 194 DGGRLYFVSYEG-----------NVYSADLSGDSAKFG-----KPWSLLTDAEKADGWRPG----GWQLIAYHAASGRLY 253 (342)
T ss_dssp TTTEEEEEBTTS-----------EEEEEEETTSSEEEE-----EEEESS-HHHHHTTEEE-----SSS-EEEETTTTEEE
T ss_pred CCCeEEEEecCC-----------EEEEEeccCCccccc-----CcccccCccccccCcCCc----ceeeeeeccccCeEE
Confidence 888899998763 588899877653211 111111111 1233444 334567777777787
Q ss_pred EEeeeC-------CeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004141 405 LSSIWG-------SSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 405 ~~~~~~-------~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~ 469 (771)
+....+ ....||.+|+++++.. ++.... ......++.|.+=+++..+.. -..|+++|..+++
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~~--~~~l~v~D~~tGk 323 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSAG--DGTLDVYDAATGK 323 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEETT--TTEEEEEETTT--
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcCC--CCeEEEEeCcCCc
Confidence 765432 3457999999998755 443222 233466777877666655442 3568888876654
No 244
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.36 E-value=8.6e-06 Score=82.07 Aligned_cols=111 Identities=18% Similarity=0.250 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHH---CCcEEEEECCCCCCCCChhhhhcCCCCccccchhh----HHHHHHHHHH
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND----VLTAIDHVID 609 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~---~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D----~~~~i~~l~~ 609 (771)
+++||++.|.|+. ...|...+..|.+ ..|.|+++.+.|......... ...+......+| ..+.++.++.
T Consensus 2 ~~li~~IPGNPGl--v~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~--~~~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGL--VEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSK--FSPNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCCh--HHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccccc--ccCCCCccCHHHHHHHHHHHHHHHhh
Confidence 5789999998886 3456666666653 489999999998433222100 001111122333 3344444444
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHhhCC---CceeEEEecCCcc
Q 004141 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLC 651 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~p~~ 651 (771)
.......++.|+|||.|+++++.++.+.+ ..+..+++..|.+
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 32114578999999999999999999988 6788888888864
No 245
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.36 E-value=7.1e-06 Score=83.73 Aligned_cols=211 Identities=14% Similarity=0.135 Sum_probs=121.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....||++|+.++-.+.+. .+.+|+ .|+.........-. .++.|.||+..++++..
T Consensus 259 k~Vrd~~~s~~g~~fLS~sfD~-----~lKlwDtETG~~~~~f~~~~~~----------~cvkf~pd~~n~fl~G~---- 319 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASFDR-----FLKLWDTETGQVLSRFHLDKVP----------TCVKFHPDNQNIFLVGG---- 319 (503)
T ss_pred hhhhhhhccccCCeeeeeecce-----eeeeeccccceEEEEEecCCCc----------eeeecCCCCCcEEEEec----
Confidence 5688899999999998776654 667774 33333333332222 58999999987877632
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~ 255 (771)
.+..|..||+.++++.+- ...+ ..+..+.|-++|++
T Consensus 320 ---------------------------------------sd~ki~~wDiRs~kvvqe--Yd~hLg~i~~i~F~~~g~r-- 356 (503)
T KOG0282|consen 320 ---------------------------------------SDKKIRQWDIRSGKVVQE--YDRHLGAILDITFVDEGRR-- 356 (503)
T ss_pred ---------------------------------------CCCcEEEEeccchHHHHH--HHhhhhheeeeEEccCCce--
Confidence 346788888888875443 2222 24566778888887
Q ss_pred cEEEEEeecCccee----------------------------eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC
Q 004141 256 QYLVFVGWSSETRK----------------------------LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 307 (771)
Q Consensus 256 ~~l~~~~~~~~~~~----------------------------~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 307 (771)
.+.++....-+- .++..|.+-...|+++.+.. .-.-.
T Consensus 357 --FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~-------------~~r~n 421 (503)
T KOG0282|consen 357 --FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP-------------PFRLN 421 (503)
T ss_pred --EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc-------------ccccC
Confidence 555543221000 11111112222333332200 00001
Q ss_pred cceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcc
Q 004141 308 PVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 385 (771)
Q Consensus 308 ~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 385 (771)
..++...+ .+......|||||++|+....+ ..++.|||.+-+........+
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsd-----------G~v~~wdwkt~kl~~~lkah~---------------- 474 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD-----------GKVNFWDWKTTKLVSKLKAHD---------------- 474 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCCeEEeecCC-----------ccEEEeechhhhhhhccccCC----------------
Confidence 11111111 3445678999999999876654 359999998866532221111
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 386 ~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
.-.....|.|-....+++..++|...+|
T Consensus 475 ---~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 475 ---QPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred ---cceEEEEecCCCcceeEecccCceeEec
Confidence 1133567888877778888888877665
No 246
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.34 E-value=2.1e-05 Score=83.25 Aligned_cols=196 Identities=16% Similarity=0.217 Sum_probs=108.9
Q ss_pred eEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCC
Q 004141 112 KLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 190 (771)
Q Consensus 112 ~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 190 (771)
.|.++.+++ ..++..++ ...+....+......| ..+.+||||++++.. ..
T Consensus 6 ~l~~V~~~~--~~~v~viD~~t~~~~~~i~~~~~~h---------~~~~~s~Dgr~~yv~-~r----------------- 56 (369)
T PF02239_consen 6 NLFYVVERG--SGSVAVIDGATNKVVARIPTGGAPH---------AGLKFSPDGRYLYVA-NR----------------- 56 (369)
T ss_dssp GEEEEEEGG--GTEEEEEETTT-SEEEEEE-STTEE---------EEEE-TT-SSEEEEE-ET-----------------
T ss_pred cEEEEEecC--CCEEEEEECCCCeEEEEEcCCCCce---------eEEEecCCCCEEEEE-cC-----------------
Confidence 344554442 34566777 4444455555434444 467899999986554 22
Q ss_pred CCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceee
Q 004141 191 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 191 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~ 270 (771)
...|.++|+.++++..- ........++++||||++ ++...+
T Consensus 57 --------------------------dg~vsviD~~~~~~v~~--i~~G~~~~~i~~s~DG~~----~~v~n~------- 97 (369)
T PF02239_consen 57 --------------------------DGTVSVIDLATGKVVAT--IKVGGNPRGIAVSPDGKY----VYVANY------- 97 (369)
T ss_dssp --------------------------TSEEEEEETTSSSEEEE--EE-SSEEEEEEE--TTTE----EEEEEE-------
T ss_pred --------------------------CCeEEEEECCcccEEEE--EecCCCcceEEEcCCCCE----EEEEec-------
Confidence 25799999999886544 344456778999999996 654432
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-ecCCC-------CccccceeecCCCCEEEEEecCCCCCC
Q 004141 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDS 342 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~-------~~~~~~p~~SpDG~~l~f~~~~~~~~~ 342 (771)
.+..+.++|. ++.+.. .+... ...+....-||+...+++.-.+.
T Consensus 98 -------~~~~v~v~D~-----------------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~---- 149 (369)
T PF02239_consen 98 -------EPGTVSVIDA-----------------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT---- 149 (369)
T ss_dssp -------ETTEEEEEET-----------------TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT----
T ss_pred -------CCCceeEecc-----------------ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC----
Confidence 2237888886 554432 23211 11234556688888766666553
Q ss_pred CCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 004141 343 GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 343 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
.+|+++|......... ..+. -+.|+ ....|+||+++++...... ..+-.+|.++
T Consensus 150 ------~~I~vVdy~d~~~~~~--------~~i~---~g~~~-------~D~~~dpdgry~~va~~~s--n~i~viD~~~ 203 (369)
T PF02239_consen 150 ------GEIWVVDYSDPKNLKV--------TTIK---VGRFP-------HDGGFDPDGRYFLVAANGS--NKIAVIDTKT 203 (369)
T ss_dssp ------TEEEEEETTTSSCEEE--------EEEE-----TTE-------EEEEE-TTSSEEEEEEGGG--TEEEEEETTT
T ss_pred ------CeEEEEEeccccccce--------eeec---ccccc-------cccccCcccceeeeccccc--ceeEEEeecc
Confidence 4799998765432111 0010 12222 3557999999887665433 3777889988
Q ss_pred CcEEEec
Q 004141 423 GELLRIT 429 (771)
Q Consensus 423 g~~~~l~ 429 (771)
+++..+.
T Consensus 204 ~k~v~~i 210 (369)
T PF02239_consen 204 GKLVALI 210 (369)
T ss_dssp TEEEEEE
T ss_pred ceEEEEe
Confidence 8777654
No 247
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=2.4e-05 Score=86.10 Aligned_cols=232 Identities=15% Similarity=0.129 Sum_probs=138.4
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc
Q 004141 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 234 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~ 234 (771)
+..++|.|||+.|.....++..+ .|......+.+...+. .-.-...+..+.+..+++..+..+.++....++..-+.
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir--~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIR--KWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceE--EeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCcccee
Confidence 36889999999776655444333 1221111011111110 00001112222234556667788888888887765331
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC
Q 004141 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 314 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 314 (771)
+.-...+...+++-+|+. +++.+. +..|-+++++ +++..+.+..
T Consensus 93 -~Rftlp~r~~~v~g~g~~----iaagsd---------------D~~vK~~~~~----------------D~s~~~~lrg 136 (933)
T KOG1274|consen 93 -ARFTLPIRDLAVSGSGKM----IAAGSD---------------DTAVKLLNLD----------------DSSQEKVLRG 136 (933)
T ss_pred -eeeeccceEEEEecCCcE----EEeecC---------------ceeEEEEecc----------------ccchheeecc
Confidence 344556778899999998 998872 2357777763 5566777888
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004141 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
+.+.+....++|.|..||..+-+. .|.+||++++.......+.. ++..|- -......+
T Consensus 137 h~apVl~l~~~p~~~fLAvss~dG-----------~v~iw~~~~~~~~~tl~~v~---------k~n~~~--~s~i~~~~ 194 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSSCDG-----------KVQIWDLQDGILSKTLTGVD---------KDNEFI--LSRICTRL 194 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEecCc-----------eEEEEEcccchhhhhcccCC---------cccccc--ccceeeee
Confidence 888999999999999998887653 58899998766533222211 011111 11224578
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC---CCceeeEEeecCCEEEEE
Q 004141 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE---SNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 395 ~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~---~~~~~~~~s~dg~~l~~~ 450 (771)
+|+|+|.++++... ++. +..++.++.+...-.... ..+....|||.|++|++.
T Consensus 195 aW~Pk~g~la~~~~-d~~--Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 195 AWHPKGGTLAVPPV-DNT--VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred eecCCCCeEEeecc-CCe--EEEEccCCceeheeecccccccceEEEEEcCCCcEEeee
Confidence 99999887776653 333 444455566544332222 236678899998877654
No 248
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.33 E-value=1.7e-05 Score=82.97 Aligned_cols=104 Identities=17% Similarity=0.306 Sum_probs=64.4
Q ss_pred CCCCcEEEEEcCCCCCCCCCcch--HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHH---
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI--- 608 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~--~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~--- 608 (771)
..++|.||.-.-.++..+-..|. ..+......|..|+.+-+.-.+. ..+.++|+..+....+
T Consensus 66 ~~krP~vViDPRAGHGpGIGGFK~dSevG~AL~~GHPvYFV~F~p~P~-------------pgQTl~DV~~ae~~Fv~~V 132 (581)
T PF11339_consen 66 PTKRPFVVIDPRAGHGPGIGGFKPDSEVGVALRAGHPVYFVGFFPEPE-------------PGQTLEDVMRAEAAFVEEV 132 (581)
T ss_pred CCCCCeEEeCCCCCCCCCccCCCcccHHHHHHHcCCCeEEEEecCCCC-------------CCCcHHHHHHHHHHHHHHH
Confidence 35678777654322222222232 23444446799888887654222 2335778776654333
Q ss_pred -HcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEe-cCCcc
Q 004141 609 -DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA-RNPLC 651 (771)
Q Consensus 609 -~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~-~~p~~ 651 (771)
+.. -+..|..|+|.|.||+.++++|+.+|+.+.-+|+ .+|+.
T Consensus 133 ~~~h-p~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPls 176 (581)
T PF11339_consen 133 AERH-PDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLS 176 (581)
T ss_pred HHhC-CCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcc
Confidence 322 2334899999999999999999999999876654 44543
No 249
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.32 E-value=5.2e-06 Score=82.82 Aligned_cols=240 Identities=10% Similarity=0.093 Sum_probs=150.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+....||++|.+++-... ...+.+| ..-+..+.++.... +.+.+++|||...+++-.+++...+
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~-----gG~iKyWqpnmnnVk~~~ahh~--------eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDK-----GGMIKYWQPNMNNVKIIQAHHA--------EAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred ccceeEEEccCCCEEEEcCC-----CceEEecccchhhhHHhhHhhh--------hhhheeccCCCCceeEEecCCCeEE
Confidence 34788999999999964322 2377778 33333344332111 1237999999888888877777554
Q ss_pred CCCccCCCCCCCCCCccCCCCC-CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWK-GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.|+........... ...|. ....|-|.-|...++.+.+-+-+||..+|....-. ....-.+..+.|+|+|.+
T Consensus 206 --iWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl-h~HKntVl~~~f~~n~N~--- 278 (464)
T KOG0284|consen 206 --IWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL-HGHKNTVLAVKFNPNGNW--- 278 (464)
T ss_pred --EEeccCCchhheec-cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh-hhccceEEEEEEcCCCCe---
Confidence 44433233333332 33333 45667777788888888888999999988754431 344557889999999987
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ +++.+-++|+. .-.++.....+...+.+..|+|--..|.....
T Consensus 279 -Llt~s---------------kD~~~kv~DiR----------------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 279 -LLTGS---------------KDQSCKVFDIR----------------TMKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred -eEEcc---------------CCceEEEEehh----------------HhHHHHHhhcchhhheeeccccccccceeecc
Confidence 88776 44567777871 12345556667777899999998877754443
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
-+ .+|..+.+...+....... .+...+-+++|.|=|. |+.+.+.+.....|
T Consensus 327 ~D----------gsvvh~~v~~~~p~~~i~~------------------AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw 377 (464)
T KOG0284|consen 327 SD----------GSVVHWVVGLEEPLGEIPP------------------AHDGEIWSLAYHPLGH-ILATGSNDRTVRFW 377 (464)
T ss_pred CC----------CceEEEeccccccccCCCc------------------ccccceeeeeccccce-eEeecCCCcceeee
Confidence 22 3466665553332211110 1222456788999996 66776666666666
Q ss_pred EEE
Q 004141 417 SVN 419 (771)
Q Consensus 417 ~~d 419 (771)
.-+
T Consensus 378 ~r~ 380 (464)
T KOG0284|consen 378 TRN 380 (464)
T ss_pred ccC
Confidence 543
No 250
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.30 E-value=1.3e-06 Score=69.38 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=46.3
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChh
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE 583 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~ 583 (771)
|.+|....+.|+. . ++.+|+++||.... ...|...++.|+++||.|+++|+|| +|.+
T Consensus 1 G~~L~~~~w~p~~---~-~k~~v~i~HG~~eh--~~ry~~~a~~L~~~G~~V~~~D~rG---hG~S 57 (79)
T PF12146_consen 1 GTKLFYRRWKPEN---P-PKAVVVIVHGFGEH--SGRYAHLAEFLAEQGYAVFAYDHRG---HGRS 57 (79)
T ss_pred CcEEEEEEecCCC---C-CCEEEEEeCCcHHH--HHHHHHHHHHHHhCCCEEEEECCCc---CCCC
Confidence 5678888998873 2 68999999996544 3368889999999999999999999 5554
No 251
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.30 E-value=0.00014 Score=71.96 Aligned_cols=277 Identities=13% Similarity=0.022 Sum_probs=141.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+....||-||.+||..--. +.-.+|.+..++....+...-.++ .-+.|.|-+..|++.+++...
T Consensus 107 DSVt~~~FshdgtlLATGdms--G~v~v~~~stg~~~~~~~~e~~di----------eWl~WHp~a~illAG~~DGsv-- 172 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMS--GKVLVFKVSTGGEQWKLDQEVEDI----------EWLKWHPRAHILLAGSTDGSV-- 172 (399)
T ss_pred CceEEEEEccCceEEEecCCC--ccEEEEEcccCceEEEeecccCce----------EEEEecccccEEEeecCCCcE--
Confidence 558889999999999863221 222233322333333332122222 588999999888887766542
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
..|.......-+....+.....-..|.||+...+.+..+..|.+||+.++.+.............-...+.+|. +
T Consensus 173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~-----~ 247 (399)
T KOG0296|consen 173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS-----T 247 (399)
T ss_pred EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc-----e
Confidence 12222222222233334444456678899777777778899999999999865542111111122234445554 4
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc---cccceeecCCCCEEEEEe
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS---SAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~---~~~~p~~SpDG~~l~f~~ 335 (771)
++..+...... .+.+....+..+. ++..+.-...... ++.+..||.+=...|-.+
T Consensus 248 ~~~g~~e~~~~----~~~~~sgKVv~~~------------------n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~ 305 (399)
T KOG0296|consen 248 LTKGNSEGVAC----GVNNGSGKVVNCN------------------NGTVPELKPSQEELDESVESIPSSSKLPLAACGS 305 (399)
T ss_pred eEeccCCccEE----EEccccceEEEec------------------CCCCccccccchhhhhhhhhcccccccchhhccc
Confidence 44443222110 0111111222222 1101111111122 233334443322222222
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
. ...|.+||+.....+.+-..... +..+.|-+ ..+|+ ++..++ .+
T Consensus 306 v-----------dG~i~iyD~a~~~~R~~c~he~~--------------------V~~l~w~~-t~~l~-t~c~~g--~v 350 (399)
T KOG0296|consen 306 V-----------DGTIAIYDLAASTLRHICEHEDG--------------------VTKLKWLN-TDYLL-TACANG--KV 350 (399)
T ss_pred c-----------cceEEEEecccchhheeccCCCc--------------------eEEEEEcC-cchhe-eeccCc--eE
Confidence 2 34688999888776554433322 34556876 44454 443344 46
Q ss_pred EEEECCCCcEEEe-cCCCCCceeeEEeecCCEEEEEE
Q 004141 416 ISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 416 ~~~d~~tg~~~~l-~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
+.+|..+|+++.. +.....+...+++++++.++.++
T Consensus 351 ~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 351 RQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred EeeeccccceEEEEecCchheeEEEEcCCCcEEEEec
Confidence 6668889987754 44444445567788887766554
No 252
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=7.5e-05 Score=72.40 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=62.1
Q ss_pred CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh-hhhhhhcCCCCCCcceecCCCCcc
Q 004141 240 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA-SELELKESSSEDLPVVNLTESISS 318 (771)
Q Consensus 240 ~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~lt~~~~~ 318 (771)
..+..++|||++++ ++.++.... -.||-.|+.=...++ ..| ..+. ..|-...+.
T Consensus 279 saV~~~aFsn~S~r----~vtvSkDG~-------------wriwdtdVrY~~~qDpk~L-------k~g~-~pl~aag~~ 333 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTR----AVTVSKDGK-------------WRIWDTDVRYEAGQDPKIL-------KEGS-APLHAAGSE 333 (420)
T ss_pred hheeeeeeCCCcce----eEEEecCCc-------------EEEeeccceEecCCCchHh-------hcCC-cchhhcCCC
Confidence 35678899999999 998873221 134444431000011 111 1121 223223333
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004141 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
......||.|+.|+.... ..|.++...+|+... .|..+....+..++|++
T Consensus 334 p~RL~lsP~g~~lA~s~g------------s~l~~~~se~g~~~~------------------~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSFG------------SDLKVFASEDGKDYP------------------ELEDIHSTTISSISYSS 383 (420)
T ss_pred ceEEEeCCCCcEEEeecC------------CceEEEEcccCccch------------------hHHHhhcCceeeEEecC
Confidence 446789999998886553 348888776655421 12222334567889999
Q ss_pred CCCEEE
Q 004141 399 DGCTML 404 (771)
Q Consensus 399 Dg~~l~ 404 (771)
||++++
T Consensus 384 ~g~~~a 389 (420)
T KOG2096|consen 384 DGKYIA 389 (420)
T ss_pred CCcEEe
Confidence 999764
No 253
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.28 E-value=4.6e-06 Score=80.40 Aligned_cols=252 Identities=13% Similarity=0.107 Sum_probs=158.4
Q ss_pred cCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcccee---ecCCccccccceEEEeCCCCCe
Q 004141 36 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQ---WAPFPVEMTGASAVVPSPSGSK 112 (771)
Q Consensus 36 ~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt---~~~~~~~~~~~~~~~~SPdG~~ 112 (771)
+-..+..|.+ ||||.+++-. ...++|-+|+..++.- ...|. ...|-.-...+....||.|...
T Consensus 212 ~KSh~EcA~F----SPDgqyLvsg---------SvDGFiEVWny~~GKl-rKDLkYQAqd~fMMmd~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 212 QKSHVECARF----SPDGQYLVSG---------SVDGFIEVWNYTTGKL-RKDLKYQAQDNFMMMDDAVLCISFSRDSEM 277 (508)
T ss_pred cccchhheee----CCCCceEeec---------cccceeeeehhccchh-hhhhhhhhhcceeecccceEEEeecccHHH
Confidence 3334444454 4588877643 2345666655533311 11111 1123222345788999999999
Q ss_pred EEEEecCCCCCCeEEEEecCCcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004141 113 LLVVRNPENESPIQFELWSQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 113 la~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
+|.-+.+ +.-.+|.+..+.-.++.-. ...++ .+++||.|+..|+..+.+.+.+ ..-...++.-+.
T Consensus 278 lAsGsqD--GkIKvWri~tG~ClRrFdrAHtkGv----------t~l~FSrD~SqiLS~sfD~tvR--iHGlKSGK~LKE 343 (508)
T KOG0275|consen 278 LASGSQD--GKIKVWRIETGQCLRRFDRAHTKGV----------TCLSFSRDNSQILSASFDQTVR--IHGLKSGKCLKE 343 (508)
T ss_pred hhccCcC--CcEEEEEEecchHHHHhhhhhccCe----------eEEEEccCcchhhcccccceEE--EeccccchhHHH
Confidence 9865443 3444555544433333321 13344 5999999999999887765433 111223334455
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceee
Q 004141 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~ 270 (771)
...+.++.....|..|+...+....+..+-+|+..+++.... .+.+.+..+.++..-|.+.. -..+.
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe----h~iVC-------- 411 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE----HFIVC-------- 411 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc----eEEEE--------
Confidence 667888999999999988888888889999999988765332 12345556777777776654 33333
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC---ccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004141 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI---SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~---~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
|+...||++++ .+.-.+.++.+. +..-....||.|.+|+-+..+.
T Consensus 412 ------Nrsntv~imn~-----------------qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~--------- 459 (508)
T KOG0275|consen 412 ------NRSNTVYIMNM-----------------QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG--------- 459 (508)
T ss_pred ------cCCCeEEEEec-----------------cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc---------
Confidence 45668999998 556666666543 3456678999999998777653
Q ss_pred cccceeeecCCCCC
Q 004141 348 TDSLHRIDWPTNGN 361 (771)
Q Consensus 348 ~~~l~~~d~~~~~~ 361 (771)
.||-+...+|+.
T Consensus 460 --vlYCF~~~sG~L 471 (508)
T KOG0275|consen 460 --VLYCFSVLSGKL 471 (508)
T ss_pred --EEEEEEeecCce
Confidence 588888877775
No 254
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.27 E-value=6.2e-05 Score=71.27 Aligned_cols=183 Identities=13% Similarity=0.105 Sum_probs=115.4
Q ss_pred cccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004141 210 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
..+++..+..+.+||+.+|+.... ......+..+.|+++|.. ++++.... . ...+.|..+|+..
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~--~k~~~~Vk~~~F~~~gn~----~l~~tD~~----m------g~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLAT--WKTNSPVKRVDFSFGGNL----ILASTDKQ----M------GYTCFVSVFDIRD 129 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEE--eecCCeeEEEeeccCCcE----EEEEehhh----c------CcceEEEEEEccC
Confidence 455677788999999999998777 566667888999999998 88876321 1 2334677777621
Q ss_pred ccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004141 290 YKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
. .+...+.+ ...+......+....|+|-|+.|+....+ ..|-.||+.+|....-...
T Consensus 130 ~----------~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~-----------G~is~~da~~g~~~v~s~~- 187 (327)
T KOG0643|consen 130 D----------SSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED-----------GSISIYDARTGKELVDSDE- 187 (327)
T ss_pred C----------hhhhcccCceEEecCCccceeeeeecccCCEEEEecCC-----------CcEEEEEcccCceeeechh-
Confidence 0 00012333 44555555678899999999998865544 3588999888754211100
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEE
Q 004141 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNII 448 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~ 448 (771)
++...+..+++|+|.. .+++++.+....|+ |..+-++.+--.....+...+++|--+.++
T Consensus 188 -----------------~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~--D~~tl~v~Kty~te~PvN~aaisP~~d~Vi 247 (327)
T KOG0643|consen 188 -----------------EHSSKINDLQFSRDRT-YFITGSKDTTAKLV--DVRTLEVLKTYTTERPVNTAAISPLLDHVI 247 (327)
T ss_pred -----------------hhccccccccccCCcc-eEEecccCccceee--eccceeeEEEeeecccccceecccccceEE
Confidence 1223567889999986 44566656666666 554544443333333345566777666555
Q ss_pred EE
Q 004141 449 AV 450 (771)
Q Consensus 449 ~~ 450 (771)
+.
T Consensus 248 lg 249 (327)
T KOG0643|consen 248 LG 249 (327)
T ss_pred ec
Confidence 43
No 255
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.26 E-value=3.3e-05 Score=72.31 Aligned_cols=176 Identities=14% Similarity=0.197 Sum_probs=116.2
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--c
Q 004141 54 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--S 131 (771)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~ 131 (771)
+.++|+.+...|.++...+-+++++++....++..+...+ +++....|--..+.|+-..+. + ...+| .
T Consensus 104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght-----g~Ir~v~wc~eD~~iLSSadd--~---tVRLWD~r 173 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT-----GGIRTVLWCHEDKCILSSADD--K---TVRLWDHR 173 (334)
T ss_pred eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC-----CcceeEEEeccCceEEeeccC--C---ceEEEEec
Confidence 4678988888899999999999999887766665554444 678888897777777654332 2 35556 3
Q ss_pred CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcc
Q 004141 132 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 211 (771)
Q Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 211 (771)
.+...+.+.....+ .++..|+||+.|-.. .
T Consensus 174 Tgt~v~sL~~~s~V----------tSlEvs~dG~ilTia-~--------------------------------------- 203 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPV----------TSLEVSQDGRILTIA-Y--------------------------------------- 203 (334)
T ss_pred cCcEEEEEecCCCC----------cceeeccCCCEEEEe-c---------------------------------------
Confidence 45555555655555 589999999966543 1
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004141 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
...|-.||..+=.+.+- ..-...+.+++.+|+-. ++..+ +....+|.+|.
T Consensus 204 -----gssV~Fwdaksf~~lKs--~k~P~nV~SASL~P~k~-----~fVaG--------------ged~~~~kfDy---- 253 (334)
T KOG0278|consen 204 -----GSSVKFWDAKSFGLLKS--YKMPCNVESASLHPKKE-----FFVAG--------------GEDFKVYKFDY---- 253 (334)
T ss_pred -----CceeEEeccccccceee--ccCccccccccccCCCc-----eEEec--------------CcceEEEEEec----
Confidence 13455566655333222 12233467788999874 44433 23447888887
Q ss_pred chhhhhhhhcCCCCCCcceec--CCCCccccceeecCCCCEEE
Q 004141 292 SEASELELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l--t~~~~~~~~p~~SpDG~~l~ 332 (771)
.+++..-. ..+.+.+..++|||||..-+
T Consensus 254 -------------~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 254 -------------NTGEEIGSYNKGHFGPVHCVRFSPDGELYA 283 (334)
T ss_pred -------------cCCceeeecccCCCCceEEEEECCCCceee
Confidence 66665444 45667799999999998433
No 256
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.8e-05 Score=73.89 Aligned_cols=171 Identities=13% Similarity=0.169 Sum_probs=97.5
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccc
Q 004141 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHG 147 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 147 (771)
..++.+++||+....-+. .+... .-..++|.|.|-.+|..... +.-.+|.+- -++.+-....+....+
T Consensus 119 S~D~tvrLWDlR~~~cqg-~l~~~-------~~pi~AfDp~GLifA~~~~~--~~IkLyD~Rs~dkgPF~tf~i~~~~~- 187 (311)
T KOG1446|consen 119 SLDKTVRLWDLRVKKCQG-LLNLS-------GRPIAAFDPEGLIFALANGS--ELIKLYDLRSFDKGPFTTFSITDNDE- 187 (311)
T ss_pred ccCCeEEeeEecCCCCce-EEecC-------CCcceeECCCCcEEEEecCC--CeEEEEEecccCCCCceeEccCCCCc-
Confidence 345677777775332211 11111 23468999999766654332 234455555 3344444433332111
Q ss_pred cccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC
Q 004141 148 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 227 (771)
Q Consensus 148 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~ 227 (771)
-.+..+.||||||.|+...+ ...++++|.=.
T Consensus 188 -----~ew~~l~FS~dGK~iLlsT~--------------------------------------------~s~~~~lDAf~ 218 (311)
T KOG1446|consen 188 -----AEWTDLEFSPDGKSILLSTN--------------------------------------------ASFIYLLDAFD 218 (311)
T ss_pred -----cceeeeEEcCCCCEEEEEeC--------------------------------------------CCcEEEEEccC
Confidence 12368999999999988633 35788899877
Q ss_pred Cceeec-cCCCCC-CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004141 228 GEVQAV-KGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 228 ~~~~~l-~~~~~~-~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
|.+..- .+.+.. ....++.|+|||+. |+-.+ .++.|+++++ +
T Consensus 219 G~~~~tfs~~~~~~~~~~~a~ftPds~F----vl~gs---------------~dg~i~vw~~-----------------~ 262 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLPLSATFTPDSKF----VLSGS---------------DDGTIHVWNL-----------------E 262 (311)
T ss_pred CcEeeeEeeccCCCCcceeEEECCCCcE----EEEec---------------CCCcEEEEEc-----------------C
Confidence 775433 111111 12357899999995 54443 2346777777 5
Q ss_pred CCcce-ecCC-CCccccceeecCCCCEEEEEecC
Q 004141 306 DLPVV-NLTE-SISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 306 ~~~~~-~lt~-~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
++..+ .+.. ..+.+..++|+|- +..|++..
T Consensus 263 tg~~v~~~~~~~~~~~~~~~fnP~--~~mf~sa~ 294 (311)
T KOG1446|consen 263 TGKKVAVLRGPNGGPVSCVRFNPR--YAMFVSAS 294 (311)
T ss_pred CCcEeeEecCCCCCCccccccCCc--eeeeeecC
Confidence 55543 3333 3455777889994 45565544
No 257
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.26 E-value=1.1e-05 Score=82.79 Aligned_cols=260 Identities=15% Similarity=0.155 Sum_probs=133.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CC---cceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QS---QLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~---~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
..+++.++-|.|.+++--+-. ..+.+|+ .| ..+..-.+ +...| .+..++|||.|..|+.++..
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h-------~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETH-------QINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred eEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCccccc-------ccceeeecCCCCeEEEEecC
Confidence 457888999999998753322 2344552 11 11111111 12222 23689999999999998755
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC--CceeeccCCCCCCccceEEEecCC
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLN 251 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspDg 251 (771)
...+ ++.+| |-.+..-...+-|+.|+.. |-+- .+....|.|+.
T Consensus 236 aqak-------------------------l~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia---------~lt~g~whP~~ 280 (641)
T KOG0772|consen 236 AQAK-------------------------LLDRD-GFEIVEFSKGDQYIRDMYNTKGHIA---------ELTCGCWHPDN 280 (641)
T ss_pred ccee-------------------------EEccC-CceeeeeeccchhhhhhhccCCcee---------eeeccccccCc
Confidence 4322 12233 2222222344555555432 2222 23345799999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec----CCC--Cccccceeec
Q 004141 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL----TES--ISSAFFPRFS 325 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l----t~~--~~~~~~p~~S 325 (771)
+. .+.++.. ++.|.+|++. +..+..++ ... .-.+.+..|+
T Consensus 281 k~----~FlT~s~--------------DgtlRiWdv~----------------~~k~q~qVik~k~~~g~Rv~~tsC~~n 326 (641)
T KOG0772|consen 281 KE----EFLTCSY--------------DGTLRIWDVN----------------NTKSQLQVIKTKPAGGKRVPVTSCAWN 326 (641)
T ss_pred cc----ceEEecC--------------CCcEEEEecC----------------CchhheeEEeeccCCCcccCceeeecC
Confidence 98 6665522 2245555542 22221111 111 1246789999
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004141 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~ 405 (771)
|||+.||-.-.+. .|-.|+..+...... .. -++...+| ..+..+.||+||++| +
T Consensus 327 rdg~~iAagc~DG-----------SIQ~W~~~~~~v~p~-------~~----vk~AH~~g---~~Itsi~FS~dg~~L-l 380 (641)
T KOG0772|consen 327 RDGKLIAAGCLDG-----------SIQIWDKGSRTVRPV-------MK----VKDAHLPG---QDITSISFSYDGNYL-L 380 (641)
T ss_pred CCcchhhhcccCC-----------ceeeeecCCcccccc-------eE----eeeccCCC---CceeEEEeccccchh-h
Confidence 9999877544332 355555422111110 00 01122221 246788999999966 4
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecC--CCCCceeeEEeecCCEEEEEEeCC--CCCCeEEEEEe
Q 004141 406 SSIWGSSQVIISVNVSSGELLRITP--AESNFSWSLLTLDGDNIIAVSSSP--VDVPQVKYGYF 465 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~--~~~~~~~~~~s~dg~~l~~~~~~~--~~p~~l~~~~~ 465 (771)
+...++...+|-++.-..-+...+. .........|||+.+.|+.-.+.+ ..+..|++++.
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 5555666667755432211111111 111224468999988777655444 34456777764
No 258
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=1.9e-05 Score=86.88 Aligned_cols=154 Identities=12% Similarity=0.140 Sum_probs=97.9
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeec-c
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-K 234 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l-~ 234 (771)
..++++-+|++||+.+++...+ .....+.........+....-.+.|.|...-+.+...+..+++||++.+.+... +
T Consensus 100 r~~~v~g~g~~iaagsdD~~vK--~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~ 177 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDDTAVK--LLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT 177 (933)
T ss_pred eEEEEecCCcEEEeecCceeEE--EEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence 5889999999999998776433 122222233334444555555677888755455566688999999998875443 2
Q ss_pred CCCC------CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc
Q 004141 235 GIPK------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 308 (771)
Q Consensus 235 ~~~~------~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 308 (771)
++.. ......++|+|+|.. +++..-++ .|-+++. ++.+
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~Pk~g~----la~~~~d~---------------~Vkvy~r-----------------~~we 221 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHPKGGT----LAVPPVDN---------------TVKVYSR-----------------KGWE 221 (933)
T ss_pred cCCccccccccceeeeeeecCCCCe----EEeeccCC---------------eEEEEcc-----------------CCce
Confidence 2221 224568999999887 88776322 3445544 3332
Q ss_pred -ceecCCC-Cc-cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 309 -VVNLTES-IS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 309 -~~~lt~~-~~-~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
...|... .. ......|||.|++||-...+ .+|.+||+++
T Consensus 222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~-----------g~I~vWnv~t 263 (933)
T KOG1274|consen 222 LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD-----------GQILVWNVDT 263 (933)
T ss_pred eheeecccccccceEEEEEcCCCcEEeeeccC-----------CcEEEEeccc
Confidence 2223222 11 26678999999999977665 3588898886
No 259
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=98.25 E-value=3e-05 Score=79.84 Aligned_cols=148 Identities=17% Similarity=0.204 Sum_probs=85.0
Q ss_pred chhhHHHHHHHHHHcCCCCC--CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh--c-CCCCCcchhhhh
Q 004141 596 DVNDVLTAIDHVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV--G-TTDIPDWCYVES 670 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~--~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~--~-~~~~~~~~~~~~ 670 (771)
.+-|++.|+.++..+..-.. -++.++|+|+||+++...+.-.|-.+.+++--++.+-..... + ..+...+.....
T Consensus 162 qAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~ 241 (403)
T PF11144_consen 162 QAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGE 241 (403)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccccccc
Confidence 34577788888877633233 489999999999999999988999999988766654321110 0 011000000000
Q ss_pred c--c-CCCCccCCCC--------CChhhHHHHhhc---Cc--ccccCCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHh
Q 004141 671 Y--G-SKGKDSFTES--------PSVEDLTRFHSK---SP--ISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALRE 732 (771)
Q Consensus 671 ~--~-~~~~~~~~~~--------~~~~~~~~~~~~---sp--~~~~~~i--~~P~lii~G~~D~~vp~~~~~~~~~~l~~ 732 (771)
+ . ......+... |..-..+.+.-. ++ +..-.+. ++-.+..|+..|+.+|.++-.++++.+++
T Consensus 242 ~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~ 321 (403)
T PF11144_consen 242 FFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKN 321 (403)
T ss_pred ccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHH
Confidence 0 0 0000000000 000000111111 11 1111112 24466679999999999999999999999
Q ss_pred CCCCEEEEEeC
Q 004141 733 KGVETKVIVFP 743 (771)
Q Consensus 733 ~g~~~~~~~~~ 743 (771)
.|.+++++.+.
T Consensus 322 lgfda~l~lIk 332 (403)
T PF11144_consen 322 LGFDATLHLIK 332 (403)
T ss_pred cCCCeEEEEec
Confidence 99999999883
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=0.0002 Score=74.96 Aligned_cols=252 Identities=15% Similarity=0.190 Sum_probs=140.9
Q ss_pred eEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCC--eEEEEecCC
Q 004141 43 AWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS--KLLVVRNPE 120 (771)
Q Consensus 43 ~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~--~la~~~~~~ 120 (771)
+| .|..|.|-...++... ..+..+++.........|.. .++....+||.+. .+|+..-..
T Consensus 128 ~W-~~qfs~dEsl~arlv~----------nev~f~~~~~f~~~~~kl~~-------~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 128 GW-VPQFSIDESLAARLVS----------NEVQFYDLGSFKTIQHKLSV-------SGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred Cc-ccccccchhhhhhhhc----------ceEEEEecCCccceeeeeec-------cceeeEEecCCCCCceEEEEccCC
Confidence 35 5666777666665442 35555555443322223322 3466777777644 566544444
Q ss_pred CCCCeEEEEecCC---cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCC
Q 004141 121 NESPIQFELWSQS---QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 197 (771)
Q Consensus 121 ~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (771)
++......++.-. ....+-.-..-..+. -...|.+-|+-|+.++....++. ..+
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadk-------vqm~WN~~gt~LLvLastdVDkt----------------n~S 246 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADK-------VQMKWNKLGTALLVLASTDVDKT----------------NAS 246 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccce-------eEEEeccCCceEEEEEEEeecCC----------------Ccc
Confidence 4666666666222 111111111111112 27889999999998875443221 111
Q ss_pred CCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeecc
Q 004141 198 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 277 (771)
Q Consensus 198 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~ 277 (771)
|. +...||.++.++.....- ......+.++.|+|+|+. .+.+- |+
T Consensus 247 YY----------------GEq~Lyll~t~g~s~~V~--L~k~GPVhdv~W~~s~~E----F~Vvy--------Gf----- 291 (566)
T KOG2315|consen 247 YY----------------GEQTLYLLATQGESVSVP--LLKEGPVHDVTWSPSGRE----FAVVY--------GF----- 291 (566)
T ss_pred cc----------------ccceEEEEEecCceEEEe--cCCCCCceEEEECCCCCE----EEEEE--------ec-----
Confidence 11 237899999985444333 566778899999999998 65542 11
Q ss_pred CCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004141 278 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 278 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
-+..+-++|+ .+..+-.+.+ +.-....|||-|+.|++..-.+ -..++-+||..
T Consensus 292 MPAkvtifnl-----------------r~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGN--------L~G~mEvwDv~ 344 (566)
T KOG2315|consen 292 MPAKVTIFNL-----------------RGKPVFDFPE--GPRNTAFFNPHGNIILLAGFGN--------LPGDMEVWDVP 344 (566)
T ss_pred ccceEEEEcC-----------------CCCEeEeCCC--CCccceEECCCCCEEEEeecCC--------CCCceEEEecc
Confidence 1235556665 3333333333 3334578999999999887654 23467888877
Q ss_pred CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-----CCeeEEEEE
Q 004141 358 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-----GSSQVIISV 418 (771)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-----~~~~~l~~~ 418 (771)
+-+ .+..-.. ..-.-+.|+|||.+++-++.. ++...||.+
T Consensus 345 n~K--~i~~~~a-------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 345 NRK--LIAKFKA-------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred chh--hcccccc-------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 632 2221110 012345799999988765542 344456655
No 261
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=2.3e-05 Score=78.91 Aligned_cols=210 Identities=15% Similarity=0.146 Sum_probs=116.7
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.....++++||+.||....++ .+.+|+=.....+... ...|+.| ..+.|||||+.|++++.
T Consensus 146 ~~k~vaf~~~gs~latgg~dg-----~lRv~~~Ps~~t~l~e-~~~~~eV------~DL~FS~dgk~lasig~------- 206 (398)
T KOG0771|consen 146 QQKVVAFNGDGSKLATGGTDG-----TLRVWEWPSMLTILEE-IAHHAEV------KDLDFSPDGKFLASIGA------- 206 (398)
T ss_pred cceEEEEcCCCCEeeeccccc-----eEEEEecCcchhhhhh-HhhcCcc------ccceeCCCCcEEEEecC-------
Confidence 346789999999999764433 5666631111111111 1223333 79999999999999832
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
....||++++|. +..+++...+.......|+-|+.+. .|
T Consensus 207 --------------------------------------d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~--~l 246 (398)
T KOG0771|consen 207 --------------------------------------DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQE--TL 246 (398)
T ss_pred --------------------------------------CceEEEEeccCchhhhcCCcccchhhhhceecccCCCc--eE
Confidence 367889988883 3334222334456677888887331 12
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
...+...... +... +.+..++- .+-...++.......+.+...|+||+.++..+++.
T Consensus 247 ~laa~~~~~~--~v~~-----~~~~~w~~----------------~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 247 RLAASQFPGG--GVRL-----CDISLWSG----------------SNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred EEEEecCCCC--ceeE-----EEeeeecc----------------ccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 2222111100 0100 12222221 02234455555666789999999999999888764
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
.+-+++..+=+..++. |..+...+..+.|+||.+.+.- .+.+....+..+
T Consensus 304 -----------sVai~~~~~lq~~~~v------------------k~aH~~~VT~ltF~Pdsr~~~s-vSs~~~~~v~~l 353 (398)
T KOG0771|consen 304 -----------SVAIYDAKSLQRLQYV------------------KEAHLGFVTGLTFSPDSRYLAS-VSSDNEAAVTKL 353 (398)
T ss_pred -----------cEEEEEeceeeeeEee------------------hhhheeeeeeEEEcCCcCcccc-cccCCceeEEEE
Confidence 2555554332211111 1112224567889999987654 444556666666
Q ss_pred ECC
Q 004141 419 NVS 421 (771)
Q Consensus 419 d~~ 421 (771)
..+
T Consensus 354 ~vd 356 (398)
T KOG0771|consen 354 AVD 356 (398)
T ss_pred eec
Confidence 553
No 262
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.22 E-value=0.00014 Score=86.35 Aligned_cols=210 Identities=14% Similarity=0.109 Sum_probs=113.0
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceee-cCCCCeEEEEecCC
Q 004141 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISW-NSDETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~w-SpDg~~la~~~~~~ 174 (771)
..+...+|+| +|..|+..+... .+.+|+ .+.....+..... ..++.| +++|+.|+..+.
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~~~~----------v~~v~~~~~~g~~latgs~-- 638 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSIGTIKTKAN----------ICCVQFPSESGRSLAFGSA-- 638 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEEEEEecCCC----------eEEEEEeCCCCCEEEEEeC--
Confidence 5578899997 778776654432 556663 2222222221111 147788 457888887532
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCC
Q 004141 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~ 252 (771)
...|++||+..++. ..+ ......+..+.|+ |+.
T Consensus 639 ------------------------------------------dg~I~iwD~~~~~~~~~~~--~~h~~~V~~v~f~-~~~ 673 (793)
T PLN00181 639 ------------------------------------------DHKVYYYDLRNPKLPLCTM--IGHSKTVSYVRFV-DSS 673 (793)
T ss_pred ------------------------------------------CCeEEEEECCCCCccceEe--cCCCCCEEEEEEe-CCC
Confidence 36789999876542 233 2334467788897 676
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. |+..+ .+..|.++|+.... ..........+..+...+....|+|+|++|+
T Consensus 674 ~----lvs~s---------------~D~~ikiWd~~~~~----------~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 674 T----LVSSS---------------TDNTLKLWDLSMSI----------SGINETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred E----EEEEE---------------CCCEEEEEeCCCCc----------cccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 6 66655 22356667762000 0001123345555555667789999999888
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~ 412 (771)
..+.+. .+++|+........ .........+....... ....+..++|++++..| ++...++.
T Consensus 725 sgs~D~-----------~v~iw~~~~~~~~~--s~~~~~~~~~~~~~~~~----~~~~V~~v~ws~~~~~l-va~~~dG~ 786 (793)
T PLN00181 725 TGSETN-----------EVFVYHKAFPMPVL--SYKFKTIDPVSGLEVDD----ASQFISSVCWRGQSSTL-VAANSTGN 786 (793)
T ss_pred EEeCCC-----------EEEEEECCCCCceE--EEecccCCcccccccCC----CCcEEEEEEEcCCCCeE-EEecCCCc
Confidence 777553 47777755432110 00000000000000000 00124678899999865 45555666
Q ss_pred eEEEE
Q 004141 413 QVIIS 417 (771)
Q Consensus 413 ~~l~~ 417 (771)
..||.
T Consensus 787 I~i~~ 791 (793)
T PLN00181 787 IKILE 791 (793)
T ss_pred EEEEe
Confidence 66663
No 263
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.19 E-value=1.7e-05 Score=80.98 Aligned_cols=90 Identities=14% Similarity=0.241 Sum_probs=63.3
Q ss_pred hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHh
Q 004141 556 SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 556 ~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
...+.++.++|..|++++.++.. .+.. ..++.....+.+..+++.+.+.. ..++|-++|+|.||.+...+++
T Consensus 129 ~s~V~~l~~~g~~vfvIsw~nPd-~~~~-----~~~~edYi~e~l~~aid~v~~it--g~~~InliGyCvGGtl~~~ala 200 (445)
T COG3243 129 KSLVRWLLEQGLDVFVISWRNPD-ASLA-----AKNLEDYILEGLSEAIDTVKDIT--GQKDINLIGYCVGGTLLAAALA 200 (445)
T ss_pred ccHHHHHHHcCCceEEEeccCch-Hhhh-----hccHHHHHHHHHHHHHHHHHHHh--CccccceeeEecchHHHHHHHH
Confidence 45788999999999999988632 1111 11222223466677888877763 3478999999999999999988
Q ss_pred hCCCc-eeEEEecCCccch
Q 004141 636 QAPDK-FVAAAARNPLCNL 653 (771)
Q Consensus 636 ~~p~~-~~~~v~~~p~~~~ 653 (771)
.++.+ ++.++......|+
T Consensus 201 ~~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 201 LMAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred hhhhcccccceeeecchhh
Confidence 88776 7777665554443
No 264
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.14 E-value=0.00095 Score=68.16 Aligned_cols=190 Identities=16% Similarity=0.102 Sum_probs=98.9
Q ss_pred eEEEEEccCCce-eeccCCCC---CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 219 SLFVININSGEV-QAVKGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 219 ~l~v~d~~~~~~-~~l~~~~~---~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.+++++++.+.. +.+..... ..........|||. ++|..-.... .+... ......||+++.
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-----~wfgt~~~~~--~~~~~-~~~~G~lyr~~p------- 150 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-----IWFGDMGYFD--LGKSE-ERPTGSLYRVDP------- 150 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-----EEEeCCCccc--cCccc-cCCcceEEEEcC-------
Confidence 345555555554 44421111 12455678899987 8887643100 01100 012237999985
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 295 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
.++..+.+..........+|||||++|++..... ..|+++++..... .+... . ..
T Consensus 151 ----------~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~----------~~i~r~~~d~~~g-~~~~~-~---~~ 205 (307)
T COG3386 151 ----------DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA----------NRIHRYDLDPATG-PIGGR-R---GF 205 (307)
T ss_pred ----------CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC----------CeEEEEecCcccC-ccCCc-c---eE
Confidence 5555555555566678899999999998887653 5799998864111 11110 0 00
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEE-eecCCEEEEEEeC
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLL-TLDGDNIIAVSSS 453 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~-s~dg~~l~~~~~~ 453 (771)
+... ..+| .....+.-.||. |+.... .+...+-+++.+...+..+..+......+.| .++.+.|++++..
T Consensus 206 ~~~~---~~~G----~PDG~~vDadG~-lw~~a~-~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 206 VDFD---EEPG----LPDGMAVDADGN-LWVAAV-WGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEcc---CCCC----CCCceEEeCCCC-EEEecc-cCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 1000 0111 122344444554 333322 2224566777774445555544333333444 4567888877766
Q ss_pred CCCC
Q 004141 454 PVDV 457 (771)
Q Consensus 454 ~~~p 457 (771)
...+
T Consensus 277 ~~~~ 280 (307)
T COG3386 277 SGMS 280 (307)
T ss_pred CCCC
Confidence 6555
No 265
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.12 E-value=3.7e-05 Score=75.97 Aligned_cols=209 Identities=13% Similarity=0.090 Sum_probs=111.2
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHH-HCCc----EEEEECCCCCCCCChhhhh----c----CCC-Cc---cccchhhH
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLS-SVGY----SLLIVNYRGSLGFGEEALQ----S----LPG-KV---GSQDVNDV 600 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la-~~G~----~Vv~~d~rG~~~~g~~~~~----~----~~~-~~---~~~~~~D~ 600 (771)
-..||+||..++ ...+..++..+. +.|. .++.++--|.-.+...+.. . ... +. ......-+
T Consensus 12 tPTifihG~~gt--~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl 89 (255)
T PF06028_consen 12 TPTIFIHGYGGT--ANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWL 89 (255)
T ss_dssp EEEEEE--TTGG--CCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHH
T ss_pred CcEEEECCCCCC--hhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHH
Confidence 447899996655 557888888886 6664 2444444443222111110 0 011 11 11123446
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC-----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004141 601 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
..++.+|.++..+ +++-++||||||..++.++..+.. .+..+|.+++.++...... ..... .....
T Consensus 90 ~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~--~~~~~---~~~~~-- 160 (255)
T PF06028_consen 90 KKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMN--DDQNQ---NDLNK-- 160 (255)
T ss_dssp HHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCS--C-TTT---T-CST--
T ss_pred HHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcccccc--ccchh---hhhcc--
Confidence 6777888887644 789999999999999999887521 3555565555444221100 00000 00000
Q ss_pred CccCCCCCC--hhhHHHHhhcCcccccCCCCCcEEEEeeC------CCCccCcHHHHHHHHHHHhCCCCEEEEEeCC--C
Q 004141 676 KDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN--D 745 (771)
Q Consensus 676 ~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~lii~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~ 745 (771)
.+ |. ......+...- ...+ .-.+.+|-|.|. .|..||...++.+...++......+-..+.| +
T Consensus 161 ----~g-p~~~~~~y~~l~~~~-~~~~-p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a 233 (255)
T PF06028_consen 161 ----NG-PKSMTPMYQDLLKNR-RKNF-PKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDA 233 (255)
T ss_dssp ----T--BSS--HHHHHHHHTH-GGGS-TTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGG
T ss_pred ----cC-CcccCHHHHHHHHHH-HhhC-CCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCC
Confidence 00 11 11111111110 0011 123679999998 8999999999988888877666666666665 5
Q ss_pred CccCCCCCChHHHHHHHHHHH
Q 004141 746 VHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~fl 766 (771)
.|.-. +++. ++.+.|..||
T Consensus 234 ~HS~L-heN~-~V~~~I~~FL 252 (255)
T PF06028_consen 234 QHSQL-HENP-QVDKLIIQFL 252 (255)
T ss_dssp SCCGG-GCCH-HHHHHHHHHH
T ss_pred ccccC-CCCH-HHHHHHHHHh
Confidence 78644 3443 6777787776
No 266
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.12 E-value=0.00024 Score=63.79 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=90.8
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004141 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
+.....+|..+.+...+... ++.++|++||.|+.++++++.+....++++++.+|.---...
T Consensus 38 w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~--------------- 99 (181)
T COG3545 38 WEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE--------------- 99 (181)
T ss_pred CCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc---------------
Confidence 44445778777776555442 455999999999999999998776689999998886311000
Q ss_pred cCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004141 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
.........+|.. ..++.-|.++++..+|+.+++++++.+.+++-. .++...++||....
T Consensus 100 --------------~~~~~~~tf~~~p-~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-----~lv~~g~~GHiN~~ 159 (181)
T COG3545 100 --------------IRPKHLMTFDPIP-REPLPFPSVVVASRNDPYVSYEHAEDLANAWGS-----ALVDVGEGGHINAE 159 (181)
T ss_pred --------------cchhhccccCCCc-cccCCCceeEEEecCCCCCCHHHHHHHHHhccH-----hheecccccccchh
Confidence 0000111111211 123345899999999999999999999988865 57788888995432
Q ss_pred --CCChHHHHHHHHHHHHH
Q 004141 752 --PQSDFESFLNIGLWFKK 768 (771)
Q Consensus 752 --~~~~~~~~~~i~~fl~~ 768 (771)
.....+.+..+..++.+
T Consensus 160 sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 160 SGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred hcCCCcHHHHHHHHHHhhh
Confidence 23333445555555543
No 267
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.11 E-value=4e-05 Score=70.52 Aligned_cols=180 Identities=18% Similarity=0.249 Sum_probs=103.8
Q ss_pred EEEEEcC-CCCCCCCCcc-hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 539 LIVVLHG-GPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 539 ~vv~~HG-g~~~~~~~~~-~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
++|++-| |++. .+ ...+..|+++|+.|+.+|-.- | +. ..+...+...|+.+.+++..++ ...+
T Consensus 4 ~~v~~SGDgGw~----~~d~~~a~~l~~~G~~VvGvdsl~---Y---fw---~~rtP~~~a~Dl~~~i~~y~~~--w~~~ 68 (192)
T PF06057_consen 4 LAVFFSGDGGWR----DLDKQIAEALAKQGVPVVGVDSLR---Y---FW---SERTPEQTAADLARIIRHYRAR--WGRK 68 (192)
T ss_pred EEEEEeCCCCch----hhhHHHHHHHHHCCCeEEEechHH---H---Hh---hhCCHHHHHHHHHHHHHHHHHH--hCCc
Confidence 5677777 3332 33 346778999999999999542 1 11 1222334477888888877776 3568
Q ss_pred eEEEEEcChhHHHHHHHHhhCCC----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHh
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
++.|+|+|+|+-+.-.+..+.|. +++.+++.+|......-. ...+|. +. .... .
T Consensus 69 ~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFei---hv~~wl-----g~---------~~~~-----~ 126 (192)
T PF06057_consen 69 RVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFEI---HVSGWL-----GM---------GGDD-----A 126 (192)
T ss_pred eEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEEE---Ehhhhc-----CC---------CCCc-----c
Confidence 99999999999888777776664 577788877753211000 000110 10 0000 0
Q ss_pred hcCcccccCCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 693 SKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 693 ~~sp~~~~~~i~-~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
...+...+.++. .|++.|+|++|.-. +...++. ..++.+..||+.| |... -....+.|++-++
T Consensus 127 ~~~~~pei~~l~~~~v~CiyG~~E~d~-------~cp~l~~--~~~~~i~lpGgHH-fd~d--y~~La~~Il~~l~ 190 (192)
T PF06057_consen 127 AYPVIPEIAKLPPAPVQCIYGEDEDDS-------LCPSLRQ--PGVEVIALPGGHH-FDGD--YDALAKRILDALK 190 (192)
T ss_pred cCCchHHHHhCCCCeEEEEEcCCCCCC-------cCccccC--CCcEEEEcCCCcC-CCCC--HHHHHHHHHHHHh
Confidence 011223344554 58999999988652 2222443 2478889988544 5422 2234455555443
No 268
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.11 E-value=0.0021 Score=64.18 Aligned_cols=222 Identities=16% Similarity=0.121 Sum_probs=124.4
Q ss_pred CcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec
Q 004141 52 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS 131 (771)
Q Consensus 52 dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~ 131 (771)
++.-|+|..+-. .+++++|..+. +..+....+ ...---..-+|||||++|+...+.-+....++-+|+
T Consensus 16 ~~~avafaRRPG--------~~~~v~D~~~g--~~~~~~~a~--~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 16 RPEAVAFARRPG--------TFALVFDCRTG--QLLQRLWAP--PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred CCeEEEEEeCCC--------cEEEEEEcCCC--ceeeEEcCC--CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 566777765432 36666665322 333222222 111113367999999998555444345566777773
Q ss_pred -CCcceEEEecCC---cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004141 132 -QSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 132 -~~~~~~~~~~~~---~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
....+++-..+. +.| .+.|.|||+.|+.. +......|.. ++
T Consensus 84 ~~~~~~ri~E~~s~GIGPH----------el~l~pDG~tLvVA-NGGI~Thpd~-------GR----------------- 128 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPH----------ELLLMPDGETLVVA-NGGIETHPDS-------GR----------------- 128 (305)
T ss_pred CcCCcEEEeEecCCCcChh----------hEEEcCCCCEEEEE-cCCCccCccc-------Cc-----------------
Confidence 334555544432 333 78899999988764 3221111100 00
Q ss_pred cCcccCCccCceEEEEEccCCceeeccCCC---CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004141 208 WGETYAGKRQPSLFVININSGEVQAVKGIP---KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~---~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
.++.....++.|..+|..+|++..--..+ ...++..++|.+||. ++|.....++.. ....-|..
T Consensus 129 -~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-----V~~a~Q~qg~~~-------~~~PLva~ 195 (305)
T PF07433_consen 129 -AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-----VAFAMQYQGDPG-------DAPPLVAL 195 (305)
T ss_pred -eecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-----EEEEEecCCCCC-------ccCCeEEE
Confidence 01222335689999999999853321022 345889999999997 555443222211 11223444
Q ss_pred EecccccchhhhhhhhcCCCCCCcceecC-------CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004141 285 VRVSLYKSEASELELKESSSEDLPVVNLT-------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-------~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
.+. ++..+.+. .-.+.+.+.++++||..++.++.+. ..+.+||..
T Consensus 196 ~~~------------------g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG----------g~~~~~d~~ 247 (305)
T PF07433_consen 196 HRR------------------GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG----------GRVAVWDAA 247 (305)
T ss_pred EcC------------------CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC----------CEEEEEECC
Confidence 432 22222222 1235688999999999998888763 457778888
Q ss_pred CCCC
Q 004141 358 TNGN 361 (771)
Q Consensus 358 ~~~~ 361 (771)
++..
T Consensus 248 tg~~ 251 (305)
T PF07433_consen 248 TGRL 251 (305)
T ss_pred CCCE
Confidence 8775
No 269
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.11 E-value=0.00013 Score=69.22 Aligned_cols=215 Identities=12% Similarity=0.064 Sum_probs=114.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCC-Ce--EEEEecC------CcceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 100 GASAVVPSPSGSKLLVVRNPENES-PI--QFELWSQ------SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~-~~--~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
.+....||++|.++++..+..-+. +. ++.+... .++...+..+... ....-|+|-|+.|++.
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk---------it~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK---------ITSALWGPLGETIIAG 165 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc---------eeeeeecccCCEEEEe
Confidence 467788999999999887654222 22 3333311 1222223322221 1477899999999885
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecC
Q 004141 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 250 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspD 250 (771)
- ....|-.||+.+|+...-........+....+|||
T Consensus 166 h--------------------------------------------e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d 201 (327)
T KOG0643|consen 166 H--------------------------------------------EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD 201 (327)
T ss_pred c--------------------------------------------CCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence 2 33678889998885443321333447889999999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCE
Q 004141 251 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 251 g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~ 330 (771)
... .+..+ ++..-.++|. .+-++..-......+...++||--..
T Consensus 202 ~T~----FiT~s---------------~Dttakl~D~-----------------~tl~v~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 202 RTY----FITGS---------------KDTTAKLVDV-----------------RTLEVLKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred cce----EEecc---------------cCccceeeec-----------------cceeeEEEeeecccccceecccccce
Confidence 986 55444 2223344454 23333222223445677889998777
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
++.....+ -+|+.|...+. -.-......++-.++-+...|.+ .-+.+++++|||+ .|.+...+
T Consensus 246 VilgGGqe--------------A~dVTTT~~r~-GKFEArFyh~i~eEEigrvkGHF-GPINsvAfhPdGk-sYsSGGED 308 (327)
T KOG0643|consen 246 VILGGGQE--------------AMDVTTTSTRA-GKFEARFYHLIFEEEIGRVKGHF-GPINSVAFHPDGK-SYSSGGED 308 (327)
T ss_pred EEecCCce--------------eeeeeeecccc-cchhhhHHHHHHHHHhccccccc-cCcceeEECCCCc-ccccCCCC
Confidence 76554332 12222211110 00000000111111111112211 1367899999998 66666667
Q ss_pred CeeEEEEEEC
Q 004141 411 SSQVIISVNV 420 (771)
Q Consensus 411 ~~~~l~~~d~ 420 (771)
+..+|..++.
T Consensus 309 G~VR~h~Fd~ 318 (327)
T KOG0643|consen 309 GYVRLHHFDS 318 (327)
T ss_pred ceEEEEEecc
Confidence 7777776653
No 270
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.11 E-value=0.00012 Score=77.10 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=87.0
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..|-+||+.+++.+.-. ......+.+++|||||++ ++.+. .+..|+++..
T Consensus 698 yd~Ti~lWDl~~~~~~~~l-~gHtdqIf~~AWSpdGr~----~AtVc---------------KDg~~rVy~P-------- 749 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYSRL-VGHTDQIFGIAWSPDGRR----IATVC---------------KDGTLRVYEP-------- 749 (1012)
T ss_pred ccceeeeeehhhhhhhhee-ccCcCceeEEEECCCCcc----eeeee---------------cCceEEEeCC--------
Confidence 4578999999988754321 344557889999999999 99887 3346777774
Q ss_pred hhhhhcCCCCCCcceecCCCCc----cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 296 ELELKESSSEDLPVVNLTESIS----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~----~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
.++ .+++.++.+ ......|.=||+.|+....+. ....+|-+||.++-....+....-++
T Consensus 750 ---------rs~-e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk-------~SeRQv~~Y~Aq~l~~~pl~t~~lDv 812 (1012)
T KOG1445|consen 750 ---------RSR-EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK-------SSERQVQMYDAQTLDLRPLYTQVLDV 812 (1012)
T ss_pred ---------CCC-CCccccCCCCccCcceeEEEEecCcEEEEecccc-------cchhhhhhhhhhhccCCcceeeeecc
Confidence 222 233443333 245678999999998887775 34567888887664433332222111
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
.+ +.--+.+-+|...|+++...+....+|.+
T Consensus 813 ap----------------s~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 813 AP----------------SPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred cC----------------ccccccccCCCceEEEecCCCceEEEEEe
Confidence 11 22234566788877665443333344433
No 271
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=98.09 E-value=0.00027 Score=73.20 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=103.0
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecC-CccchhhhhcC--CCCC-cchh-hhhccCCCCccCCCCCC
Q 004141 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGT--TDIP-DWCY-VESYGSKGKDSFTESPS 684 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~-p~~~~~~~~~~--~~~~-~~~~-~~~~~~~~~~~~~~~~~ 684 (771)
...++.++.+|.|.|==|+.+...++ ..++++|++... ++.++...... .... .|.+ ...|...+..... ..
T Consensus 166 ~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l--~t 242 (367)
T PF10142_consen 166 KFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQL--DT 242 (367)
T ss_pred hcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhc--CC
Confidence 34567899999999999999988888 467888877432 33333211100 0000 1110 0111111111111 22
Q ss_pred hhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHH
Q 004141 685 VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764 (771)
Q Consensus 685 ~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 764 (771)
.+......-.+|+.+.++++.|-||+.|..|++..+..+.-++..|.. +..+.++|+++|.+.. .+..+.+..
T Consensus 243 p~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G---~K~lr~vPN~~H~~~~----~~~~~~l~~ 315 (367)
T PF10142_consen 243 PEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG---EKYLRYVPNAGHSLIG----SDVVQSLRA 315 (367)
T ss_pred HHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC---CeeEEeCCCCCcccch----HHHHHHHHH
Confidence 344455667789999999999999999999999999999999999975 4688999999998875 577888999
Q ss_pred HHHHhh
Q 004141 765 WFKKYC 770 (771)
Q Consensus 765 fl~~~L 770 (771)
|+...+
T Consensus 316 f~~~~~ 321 (367)
T PF10142_consen 316 FYNRIQ 321 (367)
T ss_pred HHHHHH
Confidence 988754
No 272
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.08 E-value=0.00043 Score=67.20 Aligned_cols=236 Identities=15% Similarity=0.147 Sum_probs=127.3
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCccc
Q 004141 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVH 146 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 146 (771)
...+.+..||+.+-+ -.+-| ......+...+||+||++|+..+... ...+| ..|...+.+.++..+
T Consensus 42 c~nG~vvI~D~~T~~-iar~l-----saH~~pi~sl~WS~dgr~LltsS~D~-----si~lwDl~~gs~l~rirf~spv- 109 (405)
T KOG1273|consen 42 CANGRVVIYDFDTFR-IARML-----SAHVRPITSLCWSRDGRKLLTSSRDW-----SIKLWDLLKGSPLKRIRFDSPV- 109 (405)
T ss_pred ccCCcEEEEEccccc-hhhhh-----hccccceeEEEecCCCCEeeeecCCc-----eeEEEeccCCCceeEEEccCcc-
Confidence 344566666664432 12222 22234588999999999998766543 34445 344455555555544
Q ss_pred ccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004141 147 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 147 g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
....|.|-.+..+.+.-.. ..-+++++.
T Consensus 110 ---------~~~q~hp~k~n~~va~~~~-------------------------------------------~sp~vi~~s 137 (405)
T KOG1273|consen 110 ---------WGAQWHPRKRNKCVATIME-------------------------------------------ESPVVIDFS 137 (405)
T ss_pred ---------ceeeeccccCCeEEEEEec-------------------------------------------CCcEEEEec
Confidence 4778888655554443221 113445554
Q ss_pred CCceeeccCCCCC----CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC
Q 004141 227 SGEVQAVKGIPKS----LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 227 ~~~~~~l~~~~~~----~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
.++-+.|. ...+ .......|.+-|+. |+... ..+.|..+|.
T Consensus 138 ~~~h~~Lp-~d~d~dln~sas~~~fdr~g~y----IitGt---------------sKGkllv~~a--------------- 182 (405)
T KOG1273|consen 138 DPKHSVLP-KDDDGDLNSSASHGVFDRRGKY----IITGT---------------SKGKLLVYDA--------------- 182 (405)
T ss_pred CCceeecc-CCCccccccccccccccCCCCE----EEEec---------------CcceEEEEec---------------
Confidence 44444442 1111 12222357777885 55432 2235667775
Q ss_pred CCCCCcce---ecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC---CC-CCCCCc--cceeeEEe
Q 004141 303 SSEDLPVV---NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP---TN-GNFSSL--EKIVDVIP 373 (771)
Q Consensus 303 ~~~~~~~~---~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~---~~-~~~~~~--~~~~~~~~ 373 (771)
.+-+++ +++. -..+.+..+|-.|+.|++...+. -|..++.. .. ....++ ....+++.
T Consensus 183 --~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDR-----------vIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 183 --ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDR-----------VIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred --chheeeeeeeech-heeeeEEEEeccCcEEEEecCCc-----------eEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 443321 2222 23477889999999998877664 24444432 11 111111 01111111
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004141 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
-. .=...+||.||.+++..+ .....||.+....|.+.++..+..
T Consensus 249 k~--------------~Wk~ccfs~dgeYv~a~s--~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 249 KL--------------QWKKCCFSGDGEYVCAGS--ARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred hh--------------hhhheeecCCccEEEecc--ccceeEEEEecCCcceeeeecCCc
Confidence 00 012567899999887665 344569999988999998876543
No 273
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.08 E-value=0.00028 Score=70.60 Aligned_cols=175 Identities=17% Similarity=0.107 Sum_probs=98.1
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
..+++||||+.+|++.... ....|++....+.....+
T Consensus 27 ~s~AvS~dg~~~A~v~~~~-----------------------------------------~~~~L~~~~~~~~~~~~~-- 63 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGD-----------------------------------------GGRSLYVGPAGGPVRPVL-- 63 (253)
T ss_pred cceEECCCCCeEEEEEEcC-----------------------------------------CCCEEEEEcCCCcceeec--
Confidence 6899999999999997221 346888887654443333
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
.. .....|+|+++|. +.++...... ..++..+.. .......+...
T Consensus 64 -~g-~~l~~PS~d~~g~-----~W~v~~~~~~------------~~~~~~~~~----------------g~~~~~~v~~~ 108 (253)
T PF10647_consen 64 -TG-GSLTRPSWDPDGW-----VWTVDDGSGG------------VRVVRDSAS----------------GTGEPVEVDWP 108 (253)
T ss_pred -cC-CccccccccCCCC-----EEEEEcCCCc------------eEEEEecCC----------------CcceeEEeccc
Confidence 22 2677899999965 5555421111 112221110 11222223222
Q ss_pred C--ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC---CCCccceeeEEecccccCCCCCcccccCC
Q 004141 316 I--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN---FSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 316 ~--~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
. ..+.+.++||||.+++++..... ..+|++.-+..+.. ..+.... .+ ... . ...
T Consensus 109 ~~~~~I~~l~vSpDG~RvA~v~~~~~--------~~~v~va~V~r~~~g~~~~l~~~~-~~---~~~----~-----~~~ 167 (253)
T PF10647_consen 109 GLRGRITALRVSPDGTRVAVVVEDGG--------GGRVYVAGVVRDGDGVPRRLTGPR-RV---APP----L-----LSD 167 (253)
T ss_pred ccCCceEEEEECCCCcEEEEEEecCC--------CCeEEEEEEEeCCCCCcceeccce-Ee---ccc----c-----cCc
Confidence 1 16889999999999999997751 35677765532222 1221111 10 000 0 012
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004141 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 391 ~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
...+.|++++..+++....+..... .+..+++..+.+..
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l~~ 206 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPLPS 206 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCCceeE-EEEccCCcccccCC
Confidence 4578999999866555544443333 46666777777633
No 274
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.06 E-value=0.00014 Score=71.85 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=112.8
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..+.++|-....+..|+ ......+..++|-|-+.. -+.++= +.|+ -||..+-..
T Consensus 118 nddvVriy~ksst~pt~Lk-s~sQrnvtclawRPlsas----elavgC-----r~gI--------ciW~~s~tl------ 173 (445)
T KOG2139|consen 118 NDDVVRIYDKSSTCPTKLK-SVSQRNVTCLAWRPLSAS----ELAVGC-----RAGI--------CIWSDSRTL------ 173 (445)
T ss_pred cCcEEEEeccCCCCCceec-chhhcceeEEEeccCCcc----eeeeee-----ccee--------EEEEcCccc------
Confidence 4567777887766666663 344456788999998876 444441 1111 244444210
Q ss_pred hhhhhcCC-CCCCcceecCCCC--ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004141 296 ELELKESS-SEDLPVVNLTESI--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 296 ~~~~~~~~-~~~~~~~~lt~~~--~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++. .-. .-+...-++..+. ..+.+.+|.+||..|+-.+-.+ ..|.+||.+++...++...
T Consensus 174 n~~--r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gs----------ssi~iWdpdtg~~~pL~~~----- 236 (445)
T KOG2139|consen 174 NAN--RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGS----------SSIMIWDPDTGQKIPLIPK----- 236 (445)
T ss_pred ccc--cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCc----------ceEEEEcCCCCCccccccc-----
Confidence 000 000 0011111222222 3488999999999998777543 5799999999887665311
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
.. .+...+.|||||..| |.+..+....||.-+.. -..++.....+.+....|+|+|..|+|+.+
T Consensus 237 ---------gl-----gg~slLkwSPdgd~l-faAt~davfrlw~e~q~-wt~erw~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 237 ---------GL-----GGFSLLKWSPDGDVL-FAATCDAVFRLWQENQS-WTKERWILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ---------CC-----CceeeEEEcCCCCEE-EEecccceeeeehhccc-ceecceeccCCceeeeeecCCCCEEEEEEc
Confidence 00 134467899999966 45555666778743321 112222222334555689999999999987
Q ss_pred CCCCCCeEEEEEeccc
Q 004141 453 SPVDVPQVKYGYFVDK 468 (771)
Q Consensus 453 ~~~~p~~l~~~~~~~~ 468 (771)
.. +.||...+..+
T Consensus 301 gs---p~lysl~f~~~ 313 (445)
T KOG2139|consen 301 GS---PRLYSLTFDGE 313 (445)
T ss_pred CC---ceEEEEeecCC
Confidence 44 56887776543
No 275
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=98.02 E-value=1.5e-05 Score=90.43 Aligned_cols=126 Identities=24% Similarity=0.292 Sum_probs=82.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cc--hHHHHHHHHCCcEEEEECCC-CCCCCChhhhhcCCCCccccc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY--SKSLAFLSSVGYSLLIVNYR-GSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~--~~~~~~la~~G~~Vv~~d~r-G~~~~g~~~~~~~~~~~~~~~ 596 (771)
+..-+|.|......+ .|++|++|||+...... .+ ......+..+..+|+.++|| |.-|+....-...++++ .
T Consensus 97 LylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~---g 172 (545)
T KOG1516|consen 97 LYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNL---G 172 (545)
T ss_pred ceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcc---c
Confidence 455688887432223 89999999987654432 12 22333455667999999999 33222222111223444 3
Q ss_pred hhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCc
Q 004141 597 VNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPL 650 (771)
Q Consensus 597 ~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~ 650 (771)
..|+..|++|+.++ ..-|+++|.|+|||.||..+..++... ..+|..+|..++.
T Consensus 173 l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 173 LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 67999999999875 346999999999999999998776531 2466666666654
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=0.00082 Score=70.50 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=88.7
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccce
Q 004141 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFP 322 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p 322 (771)
+..|.+-|.. |+..+..+- .+.+-. +-....||.+++ ++... +.|. ..+.+.+.
T Consensus 222 qm~WN~~gt~----LLvLastdV-Dktn~S--YYGEq~Lyll~t-----------------~g~s~~V~L~-k~GPVhdv 276 (566)
T KOG2315|consen 222 QMKWNKLGTA----LLVLASTDV-DKTNAS--YYGEQTLYLLAT-----------------QGESVSVPLL-KEGPVHDV 276 (566)
T ss_pred EEEeccCCce----EEEEEEEee-cCCCcc--ccccceEEEEEe-----------------cCceEEEecC-CCCCceEE
Confidence 6789999988 766542221 122222 234568999998 53333 3333 46678999
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004141 323 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 323 ~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~ 402 (771)
.|||+|+.++.+..-- ...+-++|+...-...+.++. ....-|+|.|+.
T Consensus 277 ~W~~s~~EF~VvyGfM---------PAkvtifnlr~~~v~df~egp----------------------RN~~~fnp~g~i 325 (566)
T KOG2315|consen 277 TWSPSGREFAVVYGFM---------PAKVTIFNLRGKPVFDFPEGP----------------------RNTAFFNPHGNI 325 (566)
T ss_pred EECCCCCEEEEEEecc---------cceEEEEcCCCCEeEeCCCCC----------------------ccceEECCCCCE
Confidence 9999999887666321 234666676553221111111 134569999998
Q ss_pred EEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeeEEeecCCEEEEEEeC
Q 004141 403 MLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~dg~~l~~~~~~ 453 (771)
|++..-..=...+-.+|+.+ .+.|.... .+-....|+|||.+++.+..+
T Consensus 326 i~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPN--RKLIAKFKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EEEeecCCCCCceEEEeccc--hhhccccccCCceEEEEcCCCcEEEEEecc
Confidence 77765433223344446654 33343322 234567899999999876544
No 277
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.01 E-value=0.00012 Score=75.18 Aligned_cols=214 Identities=11% Similarity=0.088 Sum_probs=127.1
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcc--ccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEE--ecCCcc
Q 004141 70 RKKFMLSTVISKENENSVTFQWAPFPV--EMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF--HVPQTV 145 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~--~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 145 (771)
.++.+.+|++...+.+. .+ +.+++ ..+.+..-..+|||+.|++-.+ ...+.||+-..+...+ .++...
T Consensus 438 GkgcVKVWdis~pg~k~-Pv--sqLdcl~rdnyiRSckL~pdgrtLivGGe-----astlsiWDLAapTprikaeltssa 509 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKS-PV--SQLDCLNRDNYIRSCKLLPDGRTLIVGGE-----ASTLSIWDLAAPTPRIKAELTSSA 509 (705)
T ss_pred CCCeEEEeeccCCCCCC-cc--ccccccCcccceeeeEecCCCceEEeccc-----cceeeeeeccCCCcchhhhcCCcc
Confidence 44567777775554321 11 11221 1245777889999999986432 3345566322221111 111110
Q ss_pred cccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc
Q 004141 146 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 225 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 225 (771)
. ....++.|||.| |.|......+- ..|+.-.......++.+..-..-+..+.|+-.++++.-++.+.-||+
T Consensus 510 p-------aCyALa~spDak-vcFsccsdGnI-~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 510 P-------ACYALAISPDAK-VCFSCCSDGNI-AVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred h-------hhhhhhcCCccc-eeeeeccCCcE-EEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 0 114778999986 77766433221 13443222222223333332334456667667778888899999999
Q ss_pred cCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004141 226 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
..+....- ..-...+.++..+|.|.+ |+..- .+++++++.. .
T Consensus 581 regrqlqq--hdF~SQIfSLg~cP~~dW----lavGM---------------ens~vevlh~-----------------s 622 (705)
T KOG0639|consen 581 REGRQLQQ--HDFSSQIFSLGYCPTGDW----LAVGM---------------ENSNVEVLHT-----------------S 622 (705)
T ss_pred hhhhhhhh--hhhhhhheecccCCCccc----eeeec---------------ccCcEEEEec-----------------C
Confidence 87643222 233346788899999999 87643 3457888886 5
Q ss_pred CCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 306 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 306 ~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
..+.-+|.-++..+.+..|++-|++++-+..++
T Consensus 623 kp~kyqlhlheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 623 KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred CccceeecccccEEEEEEecccCceeeecCchh
Confidence 556677888888899999999999877666554
No 278
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.01 E-value=0.0014 Score=71.02 Aligned_cols=270 Identities=11% Similarity=0.063 Sum_probs=146.4
Q ss_pred CccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004141 94 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 94 ~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
++.....+....+|.|...++-.++ .-+.+| +..+..+.+.+. .+ -+..|=|.++.|+...
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~------~SikiWn~~t~kciRTi~~~-y~----------l~~~Fvpgd~~Iv~G~ 431 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAG------ESIKIWNRDTLKCIRTITCG-YI----------LASKFVPGDRYIVLGT 431 (888)
T ss_pred eccchhheeEEEeecCceeeeecCC------CcEEEEEccCcceeEEeccc-cE----------EEEEecCCCceEEEec
Confidence 3445567888999988765543222 235667 223333433332 33 3777889888887765
Q ss_pred cCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-----CCceee-cc-----CCCCCC
Q 004141 172 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-----SGEVQA-VK-----GIPKSL 240 (771)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-----~~~~~~-l~-----~~~~~~ 240 (771)
..+... .++......-.....+..-.......+|..-.+++..+..+-.||.. .|..++ |. -..-+.
T Consensus 432 k~Gel~--vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 432 KNGELQ--VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED 509 (888)
T ss_pred cCCceE--EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence 443211 12211111111111122222334455665444556666777777642 122211 10 011122
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 320 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 320 (771)
.+-.+.+||||+. |+..- .+...+||.+|. -.=...|..+.-.+.
T Consensus 510 dvL~v~~Spdgk~----LaVsL-------------LdnTVkVyflDt------------------lKFflsLYGHkLPV~ 554 (888)
T KOG0306|consen 510 DVLCVSVSPDGKL----LAVSL-------------LDNTVKVYFLDT------------------LKFFLSLYGHKLPVL 554 (888)
T ss_pred cEEEEEEcCCCcE----EEEEe-------------ccCeEEEEEecc------------------eeeeeeeccccccee
Confidence 4567899999997 77654 344457888872 233456777777899
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004141 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg 400 (771)
+...|||++.|+..+.+.. +.+|-++=|.-..-.-. +..++..+.|.|+.
T Consensus 555 smDIS~DSklivTgSADKn-----------VKiWGLdFGDCHKS~fA-------------------HdDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 555 SMDISPDSKLIVTGSADKN-----------VKIWGLDFGDCHKSFFA-------------------HDDSVMSVQFLPKT 604 (888)
T ss_pred EEeccCCcCeEEeccCCCc-----------eEEeccccchhhhhhhc-------------------ccCceeEEEEcccc
Confidence 9999999999988877652 44444444443221111 11245567788865
Q ss_pred CEEEEEeeeCCeeEEEEEECCCC-cEEEecCCCCCceeeEEeecCCEEEEE
Q 004141 401 CTMLLSSIWGSSQVIISVNVSSG-ELLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~~tg-~~~~l~~~~~~~~~~~~s~dg~~l~~~ 450 (771)
+++|+...++...-| |-+.= .++.+......+.-.+.+|+|+.++-.
T Consensus 605 -~~FFt~gKD~kvKqW--Dg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~ 652 (888)
T KOG0306|consen 605 -HLFFTCGKDGKVKQW--DGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSS 652 (888)
T ss_pred -eeEEEecCcceEEee--chhhhhhheeeccchheeeeeEEcCCCCeEEec
Confidence 588888766554444 42221 233343333344445677888866543
No 279
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.99 E-value=4.2e-05 Score=76.68 Aligned_cols=278 Identities=12% Similarity=0.059 Sum_probs=149.6
Q ss_pred CCcc--eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 51 GNGT--QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 51 ~dg~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
++|+ -+.|..+...|.++.....|.+|++..+..... +.+....+.+....+-++++.++-.++. +..++|.
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~----~tLaGs~g~it~~d~d~~~~~~iAas~d--~~~r~Wn 247 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELI----STLAGSLGNITSIDFDSDNKHVIAASND--KNLRLWN 247 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhh----hhhhccCCCcceeeecCCCceEEeecCC--Cceeeee
Confidence 4554 344555555677777777777776644432222 2233344678899999999987654433 4455555
Q ss_pred EecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004141 129 LWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
++.......++- ..++| .+..|.-....++-.+.+.+.+ .|+.......+. ....+....+...+
T Consensus 248 vd~~r~~~TLsG----HtdkV------t~ak~~~~~~~vVsgs~DRtiK--~WDl~k~~C~kt-~l~~S~cnDI~~~~-- 312 (459)
T KOG0288|consen 248 VDSLRLRHTLSG----HTDKV------TAAKFKLSHSRVVSGSADRTIK--LWDLQKAYCSKT-VLPGSQCNDIVCSI-- 312 (459)
T ss_pred ccchhhhhhhcc----cccce------eeehhhccccceeeccccchhh--hhhhhhhheecc-ccccccccceEecc--
Confidence 542211111211 11222 4566666665555555544433 333211110000 00111111111110
Q ss_pred CcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004141 209 GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
-....+.....|..||..++..+.. .+....+.++..|+||.. |...+ ++..|-++|+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~s--v~~gg~vtSl~ls~~g~~----lLsss---------------RDdtl~viDl- 370 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRS--VPLGGRVTSLDLSMDGLE----LLSSS---------------RDDTLKVIDL- 370 (459)
T ss_pred eeeeecccccceEEEeccCCceeeE--eecCcceeeEeeccCCeE----Eeeec---------------CCCceeeeec-
Confidence 0011122345588999888877666 566668899999999998 77655 3335667776
Q ss_pred cccchhhhhhhhcCCCCCCcceecCCCCc-----cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004141 289 LYKSEASELELKESSSEDLPVVNLTESIS-----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-----~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
.+.+++....-.+ ......|||||++++-.+.+ ..||+|++.+++...
T Consensus 371 ----------------Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d-----------gsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 371 ----------------RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD-----------GSVYIWSVFTGKLEK 423 (459)
T ss_pred ----------------ccccEEEEeeccccccccccceeEECCCCceeeeccCC-----------CcEEEEEccCceEEE
Confidence 4444443322111 25668999999998866655 359999999887532
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+.. ..... + .+....|.|-|+.|+.. +......||
T Consensus 424 ~l~----------~s~s~--~-----aI~s~~W~~sG~~Llsa-dk~~~v~lW 458 (459)
T KOG0288|consen 424 VLS----------LSTSN--A-----AITSLSWNPSGSGLLSA-DKQKAVTLW 458 (459)
T ss_pred Eec----------cCCCC--c-----ceEEEEEcCCCchhhcc-cCCcceEec
Confidence 211 11111 1 24577899999877543 333333444
No 280
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.97 E-value=0.00019 Score=73.66 Aligned_cols=226 Identities=13% Similarity=0.108 Sum_probs=138.3
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+-+.++|-.-+.+ |.. ....+.+|+ .++...+.+++.-. -|..+.....+|||+.|+...+
T Consensus 422 VcAvtIS~~trhV-yTg-----GkgcVKVWdis~pg~k~PvsqLdcl~-----rdnyiRSckL~pdgrtLivGGe----- 485 (705)
T KOG0639|consen 422 VCAVTISNPTRHV-YTG-----GKGCVKVWDISQPGNKSPVSQLDCLN-----RDNYIRSCKLLPDGRTLIVGGE----- 485 (705)
T ss_pred EEEEEecCCccee-Eec-----CCCeEEEeeccCCCCCCccccccccC-----cccceeeeEecCCCceEEeccc-----
Confidence 4566777777766 432 222444552 23322233222110 1233468889999999988532
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCcc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~~ 256 (771)
...|-+||++...++.-..++. ......++.|||.+
T Consensus 486 ---------------------------------------astlsiWDLAapTprikaeltssapaCyALa~spDak---- 522 (705)
T KOG0639|consen 486 ---------------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK---- 522 (705)
T ss_pred ---------------------------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc----
Confidence 2678899998876544311222 22344678999998
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
+.|.. |.+. .|.++||- +-..++++..+...+....+|+||.+|.....
T Consensus 523 -vcFsc------------csdG--nI~vwDLh----------------nq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 523 -VCFSC------------CSDG--NIAVWDLH----------------NQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred -eeeee------------ccCC--cEEEEEcc----------------cceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 88987 4333 57777771 33456778777778889999999999864333
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+ +.+..||+..+...+. -+| ...+.++..+|.+..|++-.. +.+++
T Consensus 572 D-----------ntvRcWDlregrqlqq----------------hdF----~SQIfSLg~cP~~dWlavGMe---ns~ve 617 (705)
T KOG0639|consen 572 D-----------NTVRCWDLREGRQLQQ----------------HDF----SSQIFSLGYCPTGDWLAVGME---NSNVE 617 (705)
T ss_pred c-----------cceeehhhhhhhhhhh----------------hhh----hhhheecccCCCccceeeecc---cCcEE
Confidence 3 4578888876543211 111 124567788999998876543 23456
Q ss_pred EEECCCCcEEEecCCCCCceeeEEeecCCEEEEE
Q 004141 417 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~ 450 (771)
.+.....+..+|.....-+-..-|++.|++++-+
T Consensus 618 vlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 618 VLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred EEecCCccceeecccccEEEEEEecccCceeeec
Confidence 6666555666777666544456678888876644
No 281
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.95 E-value=7.2e-05 Score=75.07 Aligned_cols=270 Identities=12% Similarity=0.104 Sum_probs=144.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+....+.|-++...++-. +...++.+| ..+....+...-.+..| .+..+.+.+|+++++-.+.+...+
T Consensus 176 gev~~v~~l~~sdtlatg-----g~Dr~Ik~W~v~~~k~~~~~tLaGs~g------~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATG-----GSDRIIKLWNVLGEKSELISTLAGSLG------NITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred cccceeEEccCcchhhhc-----chhhhhhhhhcccchhhhhhhhhccCC------CcceeeecCCCceEEeecCCCcee
Confidence 456677888876666542 344466677 33322111111112222 237889999999988877666433
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.|+.........+..+....-...|...-...+.+..+.+|-.||+..+...+-. .+.. ....+.-+ ..
T Consensus 245 --~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~S-~cnDI~~~---~~---- 313 (459)
T KOG0288|consen 245 --LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV-LPGS-QCNDIVCS---IS---- 313 (459)
T ss_pred --eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc-cccc-cccceEec---ce----
Confidence 3432222111111112111111112111111333445567778888775543321 2222 22233333 11
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.++++ ..+..|..+|. .++..++-.+..+.+.+...|+||..|...+.+
T Consensus 314 ~~~Sg--------------H~DkkvRfwD~-----------------Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 314 DVISG--------------HFDKKVRFWDI-----------------RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred eeeec--------------ccccceEEEec-----------------cCCceeeEeecCcceeeEeeccCCeEEeeecCC
Confidence 33332 12235777776 555555544555678999999999998777655
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC-CCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~-~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+ .|-++|+.+.+.++..... |..+. ......||||+.+++.-+ ....+|
T Consensus 363 d-----------tl~viDlRt~eI~~~~sA~----------------g~k~asDwtrvvfSpd~~YvaAGS---~dgsv~ 412 (459)
T KOG0288|consen 363 D-----------TLKVIDLRTKEIRQTFSAE----------------GFKCASDWTRVVFSPDGSYVAAGS---ADGSVY 412 (459)
T ss_pred C-----------ceeeeecccccEEEEeecc----------------ccccccccceeEECCCCceeeecc---CCCcEE
Confidence 4 3778888776543321111 11111 235778999999765433 234577
Q ss_pred EEECCCCcEEEecCCCC---CceeeEEeecCCEEEEEE
Q 004141 417 SVNVSSGELLRITPAES---NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~---~~~~~~~s~dg~~l~~~~ 451 (771)
.+++.+|+++.+..... .+....|++.|..++.+.
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 77888999887754433 244567778777776543
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.95 E-value=0.02 Score=69.30 Aligned_cols=133 Identities=13% Similarity=0.099 Sum_probs=69.3
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE-EecccccCCCCCc-ccccCCCCCCcc
Q 004141 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV-IPVVQCAEGDCFP-GLYSSSILSNPW 396 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~-g~~~~~~~~~~~ 396 (771)
....+|+|||++|++.... ..+|.++|+.+++...+..+.... .........+... ...-..+..+++
T Consensus 742 P~GIavspdG~~LYVADs~----------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav 811 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSE----------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC 811 (1057)
T ss_pred ccEEEEeCCCCEEEEEECC----------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeE
Confidence 4567899999988766543 357999998876532111100000 0000000000000 000012456788
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--------------CceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004141 397 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--------------NFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 397 s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--------------~~~~~~~s~dg~~l~~~~~~~~~p~~l~~ 462 (771)
++||+ ||++.. ....|..+|.+++.+..+..... ......++++|+ ++++. + ...+|.+
T Consensus 812 d~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaD-t--~Nn~Irv 884 (1057)
T PLN02919 812 AKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVAD-T--NNSLIRY 884 (1057)
T ss_pred eCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEE-C--CCCEEEE
Confidence 99997 555543 34567888988888776643210 123346777776 44433 2 2335777
Q ss_pred EEeccc
Q 004141 463 GYFVDK 468 (771)
Q Consensus 463 ~~~~~~ 468 (771)
+++.++
T Consensus 885 id~~~~ 890 (1057)
T PLN02919 885 LDLNKG 890 (1057)
T ss_pred EECCCC
Confidence 776554
No 283
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.95 E-value=9.3e-05 Score=69.35 Aligned_cols=194 Identities=8% Similarity=0.078 Sum_probs=116.0
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCC-CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTK-GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 234 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~ 234 (771)
...+||.|.++|+.....+..+. ++..... .......+..-.....|...-...+.......+.+||..+|+..+-
T Consensus 104 k~~af~~ds~~lltgg~ekllrv--fdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s- 180 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRV--FDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS- 180 (334)
T ss_pred eeEEecccchhhhccchHHHhhh--hhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEE-
Confidence 47889999999988766553331 2111111 1111112333333444543333444445667899999999987665
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC
Q 004141 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 314 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 314 (771)
+.-...+.++..|+||+ |+.++. .+.|--+|. .+-....-..
T Consensus 181 -L~~~s~VtSlEvs~dG~-----ilTia~---------------gssV~Fwda-----------------ksf~~lKs~k 222 (334)
T KOG0278|consen 181 -LEFNSPVTSLEVSQDGR-----ILTIAY---------------GSSVKFWDA-----------------KSFGLLKSYK 222 (334)
T ss_pred -EecCCCCcceeeccCCC-----EEEEec---------------CceeEEecc-----------------ccccceeecc
Confidence 45555688999999999 555541 124555664 2222221122
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004141 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
-+..+.+.+.+|+-. ++....+ ...+|++|..+++.+..- ..+.|. -+..+
T Consensus 223 ~P~nV~SASL~P~k~-~fVaGge----------d~~~~kfDy~TgeEi~~~-------------nkgh~g-----pVhcV 273 (334)
T KOG0278|consen 223 MPCNVESASLHPKKE-FFVAGGE----------DFKVYKFDYNTGEEIGSY-------------NKGHFG-----PVHCV 273 (334)
T ss_pred CccccccccccCCCc-eEEecCc----------ceEEEEEeccCCceeeec-------------ccCCCC-----ceEEE
Confidence 334578889999874 3333322 356899999998864331 011111 23456
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 395 PWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 395 ~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
.|||||. ++.+.+.++..+||....
T Consensus 274 rFSPdGE-~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 274 RFSPDGE-LYASGSEDGTIRLWQTTP 298 (334)
T ss_pred EECCCCc-eeeccCCCceEEEEEecC
Confidence 8999997 888888999999998765
No 284
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.93 E-value=0.0005 Score=75.50 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=66.7
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004141 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
+..|+.+ +-++....+..+.+|++...+...+ ......+..++|.|-..+ +|++- | -++
T Consensus 374 DlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~--F~HndfVTcVaFnPvDDr-----yFiSG-----------S--LD~ 432 (712)
T KOG0283|consen 374 DLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKV--FSHNDFVTCVAFNPVDDR-----YFISG-----------S--LDG 432 (712)
T ss_pred ecccccC-CeeEeccccccEEeecCCCcceeeE--EecCCeeEEEEecccCCC-----cEeec-----------c--ccc
Confidence 4445554 4556666778999999998888777 677778999999996654 23331 1 223
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 281 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.|.++++ ...++.--++-...+....|+|||+..+..+..
T Consensus 433 KvRiWsI-----------------~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 433 KVRLWSI-----------------SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred ceEEeec-----------------CcCeeEeehhhhhhheeEEeccCCceEEEEEec
Confidence 5555665 334444444445668899999999987765554
No 285
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.92 E-value=0.00016 Score=72.52 Aligned_cols=174 Identities=16% Similarity=0.197 Sum_probs=94.6
Q ss_pred CccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCC----cc-----cccc-cCCCcccceeecCC
Q 004141 94 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQ----TV-----HGSV-YADGWFEGISWNSD 163 (771)
Q Consensus 94 ~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~g~~-~~~~~~~~~~wSpD 163 (771)
+......+....|||+|..||-..+.+ ...+|..+. .+.++... .. +... .-.+....++||||
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g-----~v~lWk~~~-~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGG-----EVFLWKQGD-VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD 134 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCc-----eEEEEEecC-cCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence 333445688899999999998654332 455663221 11100000 00 0000 01122368899999
Q ss_pred CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccc
Q 004141 164 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVG 243 (771)
Q Consensus 164 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~ 243 (771)
+..+++.+ ..+.+++||+..|....+. ......+.
T Consensus 135 ~~~l~s~s--------------------------------------------~dns~~l~Dv~~G~l~~~~-~dh~~yvq 169 (434)
T KOG1009|consen 135 SNFLVSGS--------------------------------------------VDNSVRLWDVHAGQLLAIL-DDHEHYVQ 169 (434)
T ss_pred Cceeeeee--------------------------------------------ccceEEEEEeccceeEeec-cccccccc
Confidence 99988854 3478899999999887763 34556788
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc---ccc
Q 004141 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS---SAF 320 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~---~~~ 320 (771)
.++|-|-++. |+..+....++..+ .+-...++.+..+ .+..+.....-+...+|..+.. ..+
T Consensus 170 gvawDpl~qy----v~s~s~dr~~~~~~----~~~~~~~~~~~~~-------~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 170 GVAWDPLNQY----VASKSSDRHPEGFS----AKLKQVIKRHGLD-------IMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eeecchhhhh----hhhhccCcccceee----eeeeeeeeeeeee-------EeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999887 77655322111111 1111123322210 0111111112234445544322 367
Q ss_pred ceeecCCCCEEEE
Q 004141 321 FPRFSPDGKFLVF 333 (771)
Q Consensus 321 ~p~~SpDG~~l~f 333 (771)
.++|||||..|+-
T Consensus 235 RlsfTPdG~llvt 247 (434)
T KOG1009|consen 235 RLSFTPDGSLLVT 247 (434)
T ss_pred hcccCCCCcEEEc
Confidence 7999999997664
No 286
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.91 E-value=0.00054 Score=63.38 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=76.4
Q ss_pred CcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCC-CCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 537 DPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSL-GFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vv~~d~rG~~-~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.-.|||+-| -+... ......+..+|-+.+|..+.+.++.+. |||.. ....+.+|+..+++++...++
T Consensus 36 ~~~vvfiGG-LgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~--------slk~D~edl~~l~~Hi~~~~f- 105 (299)
T KOG4840|consen 36 SVKVVFIGG-LGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF--------SLKDDVEDLKCLLEHIQLCGF- 105 (299)
T ss_pred EEEEEEEcc-cCCCccccccHHHHHHHHhhccceeeeeeccccccccccc--------cccccHHHHHHHHHHhhccCc-
Confidence 355666655 33221 123345677888999999999988653 24432 223468999999998876542
Q ss_pred CCCeEEEEEcChhHHHHHHHHhh--CCCceeEEEecCCccchh
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCNLA 654 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~p~~~~~ 654 (771)
...|+|+|||-|.+-.++++.+ .+..++++|+.+|+.|..
T Consensus 106 -St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 106 -STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred -ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 4589999999999999988843 256788999999999875
No 287
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.91 E-value=0.0026 Score=66.04 Aligned_cols=179 Identities=15% Similarity=0.082 Sum_probs=104.2
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..+.++.+..+.+.... +--.....++.|.+.|+. |.+....+. +.+-. +-..+.||++++
T Consensus 202 a~~~i~sIp~~s~l~tk-~lfk~~~~qLkW~~~g~~----ll~l~~t~~--ksnKs--yfgesnLyl~~~---------- 262 (561)
T COG5354 202 AMVRILSIPKNSVLVTK-NLFKVSGVQLKWQVLGKY----LLVLVMTHT--KSNKS--YFGESNLYLLRI---------- 262 (561)
T ss_pred cEEEEEEccCCCeeeee-eeEeecccEEEEecCCce----EEEEEEEee--ecccc--eeccceEEEEee----------
Confidence 45556665544443331 223345668899999998 888664332 11111 123468999998
Q ss_pred hhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc
Q 004141 298 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 377 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 377 (771)
....++..-...+.+.+..|+|+++.++.++.-. ...+...|+.++-...+.++
T Consensus 263 -------~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~---------pa~~s~~~lr~Nl~~~~Pe~---------- 316 (561)
T COG5354 263 -------TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM---------PASVSVFDLRGNLRFYFPEQ---------- 316 (561)
T ss_pred -------cccccceeccccccceeeeecccCCceeEEeccc---------ccceeecccccceEEecCCc----------
Confidence 4333333224466789999999999999888322 23456666665311111111
Q ss_pred cCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe-cCCCCCceeeEEeecCCEEEEEEeCC
Q 004141 378 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 378 ~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~dg~~l~~~~~~~ 454 (771)
--..+.|||.++++++..-..-...+-.++..+ +...+ .......+..-|+||+..+.....++
T Consensus 317 ------------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~-rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 317 ------------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG-RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred ------------ccccccccCcccEEEEecCCccccceEEeccCC-ceEEEEEeecCCceEeeccCCceEEEecCCCc
Confidence 123567999999988865544344555667654 44444 22223345677899998766554433
No 288
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.89 E-value=0.00014 Score=77.04 Aligned_cols=169 Identities=15% Similarity=0.177 Sum_probs=99.6
Q ss_pred CCcEEEEEcCCCCCCCCCc-chHHHHHHHHCC--cEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH--c
Q 004141 536 CDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVG--YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID--M 610 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~-~~~~~~~la~~G--~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~--~ 610 (771)
-.|+++++||.+....... +..+-..|.-.| .-|..+|++...+ . ..-....+-+..+.++.+. .
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~ig--G--------~nI~h~ae~~vSf~r~kvlei~ 244 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIG--G--------ANIKHAAEYSVSFDRYKVLEIT 244 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCC--C--------cchHHHHHHHHHHhhhhhhhhh
Confidence 4688999999882221222 222333333333 4456677763211 0 0000112333344443222 2
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHhhCCCc-eeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHH
Q 004141 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 689 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~-~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (771)
+......|.|+|.|||+.++.+......|. +.++|++.=..+- .+ +. .+..
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~------vd----------gp------rgir------ 296 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDT------VD----------GP------RGIR------ 296 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccC------CC----------cc------cCCc------
Confidence 335567899999999988888777654443 5666654211110 00 00 0001
Q ss_pred HHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004141 690 RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 690 ~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
-+.+-.++.|+|++.|.+|..+++...+++.++++.. ++++++.+++|.+..+
T Consensus 297 -------DE~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA~---~elhVI~~adhsmaip 349 (784)
T KOG3253|consen 297 -------DEALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQAE---VELHVIGGADHSMAIP 349 (784)
T ss_pred -------chhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhcc---ceEEEecCCCccccCC
Confidence 1223356789999999999999999999999988874 8899999999998743
No 289
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.89 E-value=0.00056 Score=73.86 Aligned_cols=155 Identities=14% Similarity=0.199 Sum_probs=98.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
........+||++.|+.+.+. ++..+| ..+...+..-. .| .++.-...|+|.|..|+-..-+..
T Consensus 63 d~ita~~l~~d~~~L~~a~rs-----~llrv~~L~tgk~irswKa---~H-----e~Pvi~ma~~~~g~LlAtggaD~~- 128 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRS-----QLLRVWSLPTGKLIRSWKA---IH-----EAPVITMAFDPTGTLLATGGADGR- 128 (775)
T ss_pred hhhheeeecCCccEEEEeecc-----ceEEEEEcccchHhHhHhh---cc-----CCCeEEEEEcCCCceEEeccccce-
Confidence 456788999999988776543 477777 44443333322 11 011246789999976666544433
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCc--ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE--TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~--~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
.+.|+.........+..+........|.++|.. ++++..+..+++||+..+..-..+-......+.+..+++|+..
T Consensus 129 -v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~- 206 (775)
T KOG0319|consen 129 -VKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE- 206 (775)
T ss_pred -EEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce-
Confidence 235665444444455555555556678887753 4566678899999998665411111334456789999999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
+++++ |+.-++++|+
T Consensus 207 ---~ls~~---------------RDkvi~vwd~ 221 (775)
T KOG0319|consen 207 ---LLSVG---------------RDKVIIVWDL 221 (775)
T ss_pred ---EEEec---------------cCcEEEEeeh
Confidence 88887 4456888887
No 290
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.89 E-value=0.00031 Score=67.94 Aligned_cols=281 Identities=12% Similarity=0.086 Sum_probs=149.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCcceEEEecCCc-ccccc---cCC-CcccceeecCCCCeEEEE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQT-VHGSV---YAD-GWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~g~~---~~~-~~~~~~~wSpDg~~la~~ 170 (771)
+.....+|||||..+|.-+.. .+-.|+.+. .....+.+...... .|-.| |.. +....+.|.|-+..|+..
T Consensus 113 ~~cR~aafs~DG~lvATGsaD--~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSAD--ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cceeeeeeCCCCcEEEccCCc--ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 446788999999988864432 122233332 01111111111000 01000 111 234789999999988888
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---CCccceEEE
Q 004141 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVW 247 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---~~~~~~~~w 247 (771)
+.+...+-..+.....+...+............|-|.+.-.+++...+.+.++|+++-+.-.-. .|. ...+.++.+
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-nPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-NPDDQHTGAITQVRY 269 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-CcccccccceeEEEe
Confidence 8777655322221111111111111222234456666555677888899999999987654432 222 346889999
Q ss_pred ecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee-cC--CCCccccceee
Q 004141 248 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LT--ESISSAFFPRF 324 (771)
Q Consensus 248 spDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-lt--~~~~~~~~p~~ 324 (771)
|+.|+ |+.++. .++.|-++|= -++.+.+ +- .+...+.+..|
T Consensus 270 s~t~~-----lYvTaS--------------kDG~IklwDG-----------------VS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 270 SSTGS-----LYVTAS--------------KDGAIKLWDG-----------------VSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred cCCcc-----EEEEec--------------cCCcEEeecc-----------------ccHHHHHHHHhhcCCceeeeEEE
Confidence 99998 666652 3346777773 3444322 21 23345889999
Q ss_pred cCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEE
Q 004141 325 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 325 SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~ 404 (771)
+.+||+|.-...+ +-+++|.+.++...+.-.+.... . .-. ......|.....+++
T Consensus 314 tkn~kyiLsSG~D-----------S~vkLWEi~t~R~l~~YtGAg~t-g------rq~-------~rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 314 TKNGKYILSSGKD-----------STVKLWEISTGRMLKEYTGAGTT-G------RQK-------HRTQAVFNHTEDYVL 368 (430)
T ss_pred ccCCeEEeecCCc-----------ceeeeeeecCCceEEEEecCCcc-c------chh-------hhhhhhhcCccceEE
Confidence 9999988654444 34667777776653222111000 0 000 012334554555555
Q ss_pred EEeeeCCeeEEEEEECCCCcEEEecCC--CCCceeeEEeecCC
Q 004141 405 LSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGD 445 (771)
Q Consensus 405 ~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~dg~ 445 (771)
|- ......|..+|..++....+... .+...+...||.+-
T Consensus 369 ~p--DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 369 FP--DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred cc--ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC
Confidence 43 33455688888777765555432 23344555555443
No 291
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.88 E-value=0.00089 Score=65.16 Aligned_cols=231 Identities=14% Similarity=0.168 Sum_probs=134.2
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--Cc--chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--SS--YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~--~~--~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.++..++-- +.+++|+||-.|.-+.+... .. ....++.+.++ |.|+-+|-+|...-. ..++..+.-.
T Consensus 33 ~v~V~V~Gd----~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gA----p~~p~~y~yP 103 (326)
T KOG2931|consen 33 VVHVTVYGD----PKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGA----PSFPEGYPYP 103 (326)
T ss_pred cEEEEEecC----CCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCC----ccCCCCCCCC
Confidence 467667642 33367889999985443211 11 12345666666 999999999853322 2234343334
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh---------------hcCC
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------------VGTT 660 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~---------------~~~~ 660 (771)
..+++.+.+-.+.+.. .-+-|.-+|--.|+++-..+|..||+++-++|++++......+ .+.+
T Consensus 104 smd~LAd~l~~VL~~f--~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwiew~~~K~~s~~l~~~Gmt 181 (326)
T KOG2931|consen 104 SMDDLADMLPEVLDHF--GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIEWAYNKVSSNLLYYYGMT 181 (326)
T ss_pred CHHHHHHHHHHHHHhc--CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHHHHHHHHHHHHHHhhchh
Confidence 5677777777776663 4467899999999999999999999999999999875532211 0111
Q ss_pred -CCCcchhhhhccCCCCcc-----------CCCCCChhhHHHH----hhcCccc-ccC----CCCCcEEEEeeCCCCccC
Q 004141 661 -DIPDWCYVESYGSKGKDS-----------FTESPSVEDLTRF----HSKSPIS-HIS----KVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 661 -~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~----~~~sp~~-~~~----~i~~P~lii~G~~D~~vp 719 (771)
...++.+...|+.+.... +.......+...+ .....+. ... .++||+|++.|+.-+.+
T Consensus 182 ~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~tlkc~vllvvGd~Sp~~- 260 (326)
T KOG2931|consen 182 QGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTTLKCPVLLVVGDNSPHV- 260 (326)
T ss_pred hhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCccccccEEEEecCCCchh-
Confidence 112222233333322111 1111221222221 1111111 111 45699999999998887
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
+...++..+|... ...++.+.++|-.....+. ....+.+.-|+
T Consensus 261 -~~vv~~n~~Ldp~--~ttllk~~d~g~l~~e~qP-~kl~ea~~~Fl 303 (326)
T KOG2931|consen 261 -SAVVECNSKLDPT--YTTLLKMADCGGLVQEEQP-GKLAEAFKYFL 303 (326)
T ss_pred -hhhhhhhcccCcc--cceEEEEcccCCcccccCc-hHHHHHHHHHH
Confidence 6667777766543 4778888888765443232 24444444444
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.86 E-value=0.00086 Score=67.36 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=96.7
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEe-cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWA-PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ws-pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
...|+.++.++++.+.+. .+. ....++. +||+ |++.. . ..+.++|+
T Consensus 21 ~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~-----l~v~~-~---------------~~~~~~d~-------- 67 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGR-----LYVAD-S---------------GGIAVVDP-------- 67 (246)
T ss_dssp TTEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSE-----EEEEE-T---------------TCEEEEET--------
T ss_pred CCEEEEEECCCCeEEEEe-cCC---CceEEEEccCCE-----EEEEE-c---------------CceEEEec--------
Confidence 378999999999877652 222 4455666 6654 54443 1 14555587
Q ss_pred hhhhhcCCCCCCcceecCCC------CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee
Q 004141 296 ELELKESSSEDLPVVNLTES------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 369 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~------~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 369 (771)
.+++.+.+... .......++.|||+ |+|.......... .....||+++.. ++...+....
T Consensus 68 ---------~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~--~~~g~v~~~~~~-~~~~~~~~~~- 133 (246)
T PF08450_consen 68 ---------DTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASG--IDPGSVYRIDPD-GKVTVVADGL- 133 (246)
T ss_dssp ---------TTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTC--GGSEEEEEEETT-SEEEEEEEEE-
T ss_pred ---------CCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcccc--ccccceEEECCC-CeEEEEecCc-
Confidence 66665554332 23467789999999 7777655421100 111569999876 4432221111
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC--CCcE---EEec-CCCC--CceeeEEe
Q 004141 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS--SGEL---LRIT-PAES--NFSWSLLT 441 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~--tg~~---~~l~-~~~~--~~~~~~~s 441 (771)
. ....++|+||++.||++.+..+ .||+++++ ++++ +.+. .... ......++
T Consensus 134 ------------~-------~pNGi~~s~dg~~lyv~ds~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 134 ------------G-------FPNGIAFSPDGKTLYVADSFNG--RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp ------------S-------SEEEEEEETTSSEEEEEETTTT--EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred ------------c-------cccceEECCcchheeecccccc--eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 1 1346789999998988665444 46666653 4422 2221 1221 13334556
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 442 LDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 442 ~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.+|+ |+.+.. ....|++++..
T Consensus 193 ~~G~-l~va~~---~~~~I~~~~p~ 213 (246)
T PF08450_consen 193 SDGN-LWVADW---GGGRIVVFDPD 213 (246)
T ss_dssp TTS--EEEEEE---TTTEEEEEETT
T ss_pred CCCC-EEEEEc---CCCEEEEECCC
Confidence 6665 444433 44567777644
No 293
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=97.85 E-value=0.00077 Score=65.18 Aligned_cols=162 Identities=10% Similarity=0.009 Sum_probs=97.6
Q ss_pred cCceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004141 216 RQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
.+..|++|++.+... -.+ .-....+..+.|.+||.. |+-.+ .+..++.+|.
T Consensus 67 ~Dr~I~LWnv~gdceN~~~l--kgHsgAVM~l~~~~d~s~----i~S~g---------------tDk~v~~wD~------ 119 (338)
T KOG0265|consen 67 SDRAIVLWNVYGDCENFWVL--KGHSGAVMELHGMRDGSH----ILSCG---------------TDKTVRGWDA------ 119 (338)
T ss_pred CcceEEEEeccccccceeee--ccccceeEeeeeccCCCE----EEEec---------------CCceEEEEec------
Confidence 346889998765432 223 233446788999999997 76665 3348999998
Q ss_pred hhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004141 294 ASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++|+. ++...+...+.+..-+.-|-.|+-...++ .++.+||....+..+..+...+
T Consensus 120 -----------~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD----------~t~kl~D~R~k~~~~t~~~kyq-- 176 (338)
T KOG0265|consen 120 -----------ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD----------GTLKLWDIRKKEAIKTFENKYQ-- 176 (338)
T ss_pred -----------ccceeeehhccccceeeecCccccCCeEEEecCCC----------ceEEEEeecccchhhcccccee--
Confidence 66654 45555555566666666777777666554 4688889887665444322221
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEE
Q 004141 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNII 448 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~dg~~l~ 448 (771)
+..+.|..++..+ ++..-++..++| |+..++...+..+.. .+.....+++|..++
T Consensus 177 ------------------ltAv~f~d~s~qv-~sggIdn~ikvW--d~r~~d~~~~lsGh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 177 ------------------LTAVGFKDTSDQV-ISGGIDNDIKVW--DLRKNDGLYTLSGHADTITGLSLSRYGSFLL 232 (338)
T ss_pred ------------------EEEEEecccccce-eeccccCceeee--ccccCcceEEeecccCceeeEEeccCCCccc
Confidence 3456787777655 444444444555 554555555544433 344455666766543
No 294
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.84 E-value=0.00011 Score=71.84 Aligned_cols=102 Identities=18% Similarity=0.305 Sum_probs=59.9
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHH--------HHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFL--------SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 609 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~l--------a~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 609 (771)
..|||+||..++ ...+......+ ....+.++.+||..... . ..+.......+-+..+++.+.+
T Consensus 5 ~pVlFIhG~~Gs--~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s---~----~~g~~l~~q~~~~~~~i~~i~~ 75 (225)
T PF07819_consen 5 IPVLFIHGNAGS--YKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELS---A----FHGRTLQRQAEFLAEAIKYILE 75 (225)
T ss_pred CEEEEECcCCCC--HhHHHHHHHHHhhhhhhccCccceeEEEeccCcccc---c----cccccHHHHHHHHHHHHHHHHH
Confidence 569999996554 22333333322 12357889999875211 0 1111111223445556666655
Q ss_pred cC---CCCCCeEEEEEcChhHHHHHHHHhhCC---CceeEEEecC
Q 004141 610 MG---LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARN 648 (771)
Q Consensus 610 ~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~ 648 (771)
.. ...+++|.|+||||||.++-.++...+ +.++.+|..+
T Consensus 76 ~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~ 120 (225)
T PF07819_consen 76 LYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLG 120 (225)
T ss_pred hhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEc
Confidence 42 356789999999999999988876543 3567766544
No 295
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.84 E-value=0.007 Score=61.63 Aligned_cols=206 Identities=14% Similarity=0.152 Sum_probs=123.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC-cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....++|+-..++..+... ++.+| ... ....+... | ++....++-.|.|++|+..++++
T Consensus 262 kki~~v~~~~~~~~v~~aSad~-----~i~vws~~~~s~~~~~~~----h-----~~~V~~ls~h~tgeYllsAs~d~-- 325 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADE-----IIRVWSVPLSSEPTSSRP----H-----EEPVTGLSLHPTGEYLLSASNDG-- 325 (506)
T ss_pred eEEEEEEeccchhheeecCCcc-----eEEeeccccccCcccccc----c-----cccceeeeeccCCcEEEEecCCc--
Confidence 4577888999988776554433 66677 222 11122221 1 11125788889999998876554
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCCCCccceEEEecCCCCCc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.....|..+|.. ..+..-..+..+.+.+|.|||
T Consensus 326 ------------------------------------------~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---- 359 (506)
T KOG0289|consen 326 ------------------------------------------TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---- 359 (506)
T ss_pred ------------------------------------------eEEEEEccCCcEEEEEeeccccceeEEeeEcCCc----
Confidence 222334444432 222101123457788999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
++|..- ..++.|-++|+. ......++..+.+.+....||.+|=+||...
T Consensus 360 --Lifgtg-------------t~d~~vkiwdlk----------------s~~~~a~Fpght~~vk~i~FsENGY~Lat~a 408 (506)
T KOG0289|consen 360 --LIFGTG-------------TPDGVVKIWDLK----------------SQTNVAKFPGHTGPVKAISFSENGYWLATAA 408 (506)
T ss_pred --eEEecc-------------CCCceEEEEEcC----------------CccccccCCCCCCceeEEEeccCceEEEEEe
Confidence 556541 234477788872 3335666777788899999999999999888
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
++. .+.+||+..-+..+. ++. ..+. .+.+++|-.-|++|... +....+
T Consensus 409 dd~-----------~V~lwDLRKl~n~kt----------~~l---~~~~-----~v~s~~fD~SGt~L~~~---g~~l~V 456 (506)
T KOG0289|consen 409 DDG-----------SVKLWDLRKLKNFKT----------IQL---DEKK-----EVNSLSFDQSGTYLGIA---GSDLQV 456 (506)
T ss_pred cCC-----------eEEEEEehhhcccce----------eec---cccc-----cceeEEEcCCCCeEEee---cceeEE
Confidence 764 288888865442110 000 0010 14466777778877654 456778
Q ss_pred EEEECCCCcEEEec
Q 004141 416 ISVNVSSGELLRIT 429 (771)
Q Consensus 416 ~~~d~~tg~~~~l~ 429 (771)
|.+.-.+.+.+.+.
T Consensus 457 y~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 457 YICKKKTKSWTEIK 470 (506)
T ss_pred EEEecccccceeee
Confidence 88887777766654
No 296
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.80 E-value=0.0015 Score=67.39 Aligned_cols=232 Identities=11% Similarity=0.049 Sum_probs=134.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+....|--||+.+|-- +. .|.-++|.+....-.+.+-.....+ ....|+|++..++..+.++
T Consensus 69 ~~v~s~~fR~DG~LlaaG-D~-sG~V~vfD~k~r~iLR~~~ah~apv----------~~~~f~~~d~t~l~s~sDd---- 132 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAG-DE-SGHVKVFDMKSRVILRQLYAHQAPV----------HVTKFSPQDNTMLVSGSDD---- 132 (487)
T ss_pred cceeEEEeecCCeEEEcc-CC-cCcEEEeccccHHHHHHHhhccCce----------eEEEecccCCeEEEecCCC----
Confidence 457788999999988742 21 1333444311111111111122233 3778999888777654432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
..+-+||+.+..+ ++.-......+...+|+|-... |
T Consensus 133 ---------------------------------------~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~h----i 168 (487)
T KOG0310|consen 133 ---------------------------------------KVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDH----I 168 (487)
T ss_pred ---------------------------------------ceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCe----E
Confidence 4566788888876 3321445557888899999998 8
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-CCCCccccceeecCCCCEEEEEecC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
++++- .+..|..+|+ .....+.+ .++...+.+..+-|.|+.|+..+
T Consensus 169 vvtGs--------------YDg~vrl~Dt-----------------R~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-- 215 (487)
T KOG0310|consen 169 VVTGS--------------YDGKVRLWDT-----------------RSLTSRVVELNHGCPVESVLALPSGSLIASAG-- 215 (487)
T ss_pred EEecC--------------CCceEEEEEe-----------------ccCCceeEEecCCCceeeEEEcCCCCEEEEcC--
Confidence 88872 2235666665 22212222 23445688899999999888554
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
++.+.+||+.+|......... +.-.+..+++..|+.+|+ +.+-++...+|.
T Consensus 216 ----------Gn~vkVWDl~~G~qll~~~~~------------------H~KtVTcL~l~s~~~rLl-S~sLD~~VKVfd 266 (487)
T KOG0310|consen 216 ----------GNSVKVWDLTTGGQLLTSMFN------------------HNKTVTCLRLASDSTRLL-SGSLDRHVKVFD 266 (487)
T ss_pred ----------CCeEEEEEecCCceehhhhhc------------------ccceEEEEEeecCCceEe-ecccccceEEEE
Confidence 356899999866542211110 001234566777887774 555566667774
Q ss_pred EECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCC
Q 004141 418 VNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 418 ~d~~tg~~~-~l~~~~~~~~~~~~s~dg~~l~~~~~~~~ 455 (771)
..+-++. .+.-+ +.+-...+++|+..+++-.++..
T Consensus 267 --~t~~Kvv~s~~~~-~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 267 --TTNYKVVHSWKYP-GPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred --ccceEEEEeeecc-cceeeEEecCCCceEEEecccce
Confidence 3232322 22222 23344677888888887665543
No 297
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.78 E-value=0.00088 Score=66.23 Aligned_cols=232 Identities=13% Similarity=0.194 Sum_probs=115.4
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--Cc-ch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--SS-YS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~--~~-~~-~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.++..++-- ..+++|+||-.|--+.+... .. +. ..++.+ ...|.|+-+|.+|..+-... ++..+.-.
T Consensus 10 ~v~V~v~G~----~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i-~~~f~i~Hi~aPGqe~ga~~----~p~~y~yP 80 (283)
T PF03096_consen 10 SVHVTVQGD----PKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEI-LQNFCIYHIDAPGQEEGAAT----LPEGYQYP 80 (283)
T ss_dssp EEEEEEESS------TTS-EEEEE--TT--HHHHCHHHHCSHHHHHH-HTTSEEEEEE-TTTSTT---------TT----
T ss_pred EEEEEEEec----CCCCCceEEEeccccccchHHHHHHhcchhHHHH-hhceEEEEEeCCCCCCCccc----cccccccc
Confidence 466666642 23468999999974432111 11 11 233444 45699999999996542222 23232223
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh---------------cCC
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---------------GTT 660 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~---------------~~~ 660 (771)
.++++.+.+..+.+.. .-+.+.-+|--+|+++-+.+|..+|+++-++|+++|......+. +.+
T Consensus 81 smd~LAe~l~~Vl~~f--~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~L~~~gmt 158 (283)
T PF03096_consen 81 SMDQLAEMLPEVLDHF--GLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWLLYSYGMT 158 (283)
T ss_dssp -HHHHHCTHHHHHHHH--T---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH-------CTT
T ss_pred CHHHHHHHHHHHHHhC--CccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhcccccccccc
Confidence 4555555555555552 33569999999999999999999999999999999876432211 111
Q ss_pred CC-CcchhhhhccCCCCc-----------cCCCCCChhhHHHHh----hc-CcccccCCCCCcEEEEeeCCCCccCcHHH
Q 004141 661 DI-PDWCYVESYGSKGKD-----------SFTESPSVEDLTRFH----SK-SPISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 661 ~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~----~~-sp~~~~~~i~~P~lii~G~~D~~vp~~~~ 723 (771)
.. .+......|+..... .+.....+.+...+. .. +.....+...||+|++.|+.-+.+ +.+
T Consensus 159 ~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp~~--~~v 236 (283)
T PF03096_consen 159 SSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSPHV--DDV 236 (283)
T ss_dssp S-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTSTTH--HHH
T ss_pred cchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCcch--hhH
Confidence 10 011111111110000 000111111111111 11 111234556799999999999887 777
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 724 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
.++..+|.. ...+++.++++|=... .+......+.+.-|++
T Consensus 237 v~~ns~Ldp--~~ttllkv~dcGglV~-eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 237 VEMNSKLDP--TKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp HHHHHHS-C--CCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHH
T ss_pred HHHHhhcCc--ccceEEEecccCCccc-ccCcHHHHHHHHHHHc
Confidence 888888854 3588999999865332 3333345555555554
No 298
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.011 Score=63.38 Aligned_cols=187 Identities=12% Similarity=0.052 Sum_probs=115.7
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...+.++|..+.+...- .+-......++++||++. ++... .. ++...+..+|-
T Consensus 95 ~~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~----vYV~n-~~-----------~~~~~vsvid~--------- 147 (381)
T COG3391 95 SNTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKY----VYVAN-AG-----------NGNNTVSVIDA--------- 147 (381)
T ss_pred CCeEEEEcCcccceeeE--eeeccCCceEEECCCCCE----EEEEe-cc-----------cCCceEEEEeC---------
Confidence 36788899776665444 333336778999999997 66554 11 13457888886
Q ss_pred hhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004141 297 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
.++...............+++|||++++-.... ...|.++|..+....+ .... ...
T Consensus 148 --------~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~----------~~~v~vi~~~~~~v~~-~~~~-~~~---- 203 (381)
T COG3391 148 --------ATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSD----------DNTVSVIDTSGNSVVR-GSVG-SLV---- 203 (381)
T ss_pred --------CCCeEEEEEecCCCcceEEECCCCCeEEEEecC----------CCeEEEEeCCCcceec-cccc-ccc----
Confidence 544433222222233778999999987665522 3568888865544322 1100 000
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeeEEeecCCEEEEEEeCC
Q 004141 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~dg~~l~~~~~~~ 454 (771)
..+ .......+++||++++..........+..+|..++.+........ ......++|+|+.++.....
T Consensus 204 ----~~~-----~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~- 273 (381)
T COG3391 204 ----GVG-----TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ- 273 (381)
T ss_pred ----ccC-----CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-
Confidence 011 124567799999988777654444689999999988887632222 23346788999988877654
Q ss_pred CCCCeEEEEEec
Q 004141 455 VDVPQVKYGYFV 466 (771)
Q Consensus 455 ~~p~~l~~~~~~ 466 (771)
...+++++..
T Consensus 274 --~~~V~vid~~ 283 (381)
T COG3391 274 --GGTVSVIDGA 283 (381)
T ss_pred --CCeEEEEeCC
Confidence 5667777654
No 299
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.75 E-value=0.0031 Score=63.12 Aligned_cols=108 Identities=13% Similarity=0.011 Sum_probs=60.5
Q ss_pred eEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCC
Q 004141 43 AWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE 122 (771)
Q Consensus 43 ~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~ 122 (771)
....+.+|+||+.+++... ......|+.... + +....+... .....|+|+|+|...++.. .. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~------~~~~~~L~~~~~--~-~~~~~~~~g------~~l~~PS~d~~g~~W~v~~-~~-~ 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE------GDGGRSLYVGPA--G-GPVRPVLTG------GSLTRPSWDPDGWVWTVDD-GS-G 87 (253)
T ss_pred cccceEECCCCCeEEEEEE------cCCCCEEEEEcC--C-CcceeeccC------CccccccccCCCCEEEEEc-CC-C
Confidence 3557778999999999871 124457777442 2 223322211 3578899999976554433 22 1
Q ss_pred CCeEEEEecCCcce-EEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 123 SPIQFELWSQSQLE-KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 123 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
...++.....+... ..++.... .+ .+..+.+||||+++|++.+..
T Consensus 88 ~~~~~~~~~~g~~~~~~v~~~~~-~~------~I~~l~vSpDG~RvA~v~~~~ 133 (253)
T PF10647_consen 88 GVRVVRDSASGTGEPVEVDWPGL-RG------RITALRVSPDGTRVAVVVEDG 133 (253)
T ss_pred ceEEEEecCCCcceeEEeccccc-CC------ceEEEEECCCCcEEEEEEecC
Confidence 11222111223222 22222211 11 237999999999999997654
No 300
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.75 E-value=0.00022 Score=73.86 Aligned_cols=57 Identities=18% Similarity=0.380 Sum_probs=40.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEE-EecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
+.+..-+|||||.-|+.+.+++ +..+| ..|-.+.. .+....+ .+.+|.|+...++|-
T Consensus 105 ~A~~~gRW~~dGtgLlt~GEDG-----~iKiWSrsGMLRStl~Q~~~~v----------~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAGEDG-----VIKIWSRSGMLRSTVVQNEESI----------RCARWAPNSNSIVFC 163 (737)
T ss_pred hhhhhcccCCCCceeeeecCCc-----eEEEEeccchHHHHHhhcCcee----------EEEEECCCCCceEEe
Confidence 5577789999999998765444 88999 44443322 2223333 699999999999996
No 301
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.75 E-value=0.00027 Score=70.63 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=74.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-----chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-----YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-----~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
|+..+++..+.-+ ..++..-|+++-|.+....... .........+.|..|+.+||||-+ .+.. ..+
T Consensus 120 D~~~IDt~~I~~~---~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg---~S~G---~~s 190 (365)
T PF05677_consen 120 DGVKIDTMAIHQP---EAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVG---SSTG---PPS 190 (365)
T ss_pred CCEEEEEEEeeCC---CCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccc---cCCC---CCC
Confidence 6788888776522 2345567888888554322100 122344455789999999999944 3311 111
Q ss_pred ccccchhhHHHHHHHHHHcC-CCCCCeEEEEEcChhHHHHHHHHhhC
Q 004141 592 VGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQA 637 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~ 637 (771)
....+.|..++++||.++. .+.+++|.+.|||.||.++..++.++
T Consensus 191 -~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 191 -RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred -HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 1234788889999998743 47889999999999999998766654
No 302
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.71 E-value=0.0004 Score=69.36 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=58.6
Q ss_pred CCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 702 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 702 ~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
...+|-|++.++.|.+++.++.+++.+..++.|.+++...+.+..|.-....+..++++.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 45689999999999999999999999999999999999999999998777777778888888773
No 303
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.70 E-value=0.0011 Score=71.81 Aligned_cols=194 Identities=13% Similarity=0.145 Sum_probs=116.1
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-------CCcceE--------EEecCCcccccccCCCcccceeecC
Q 004141 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWS-------QSQLEK--------EFHVPQTVHGSVYADGWFEGISWNS 162 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-------~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~wSp 162 (771)
.+.++..+.+||++..+..+.+. ...+|+ .|..++ ...++..+ .++++||
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDk-----tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv----------L~v~~Sp 518 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADK-----TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV----------LCVSVSP 518 (888)
T ss_pred ccceeeeeecCCCCceEEecCCc-----EEEEEeEEEEeccCcccceeeeeccceEEeccccE----------EEEEEcC
Confidence 35688899999999998765543 333331 233323 23333333 6999999
Q ss_pred CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCcc
Q 004141 163 DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSV 242 (771)
Q Consensus 163 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~ 242 (771)
||+.||..--+. .-.+|-+| +=+...-. -.....+
T Consensus 519 dgk~LaVsLLdn------------------------------------------TVkVyflD--tlKFflsL-YGHkLPV 553 (888)
T KOG0306|consen 519 DGKLLAVSLLDN------------------------------------------TVKVYFLD--TLKFFLSL-YGHKLPV 553 (888)
T ss_pred CCcEEEEEeccC------------------------------------------eEEEEEec--ceeeeeee-cccccce
Confidence 999998863221 12344444 33322210 2345567
Q ss_pred ceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccc
Q 004141 243 GQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFF 321 (771)
Q Consensus 243 ~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~ 321 (771)
.....|||++- |+..+ .+++-.||=+|+ |.+ +-+..+..++.+
T Consensus 554 ~smDIS~DSkl----ivTgS-------------ADKnVKiWGLdF-------------------GDCHKS~fAHdDSvm~ 597 (888)
T KOG0306|consen 554 LSMDISPDSKL----IVTGS-------------ADKNVKIWGLDF-------------------GDCHKSFFAHDDSVMS 597 (888)
T ss_pred eEEeccCCcCe----EEecc-------------CCCceEEecccc-------------------chhhhhhhcccCceeE
Confidence 78899999997 77665 345557888876 554 456677888999
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCC
Q 004141 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~ 401 (771)
+.|-|+ ..+.|....+ ..+..||-..=+..+...+. .. -+.-.+-+|+|.
T Consensus 598 V~F~P~-~~~FFt~gKD----------~kvKqWDg~kFe~iq~L~~H--------------~~-----ev~cLav~~~G~ 647 (888)
T KOG0306|consen 598 VQFLPK-THLFFTCGKD----------GKVKQWDGEKFEEIQKLDGH--------------HS-----EVWCLAVSPNGS 647 (888)
T ss_pred EEEccc-ceeEEEecCc----------ceEEeechhhhhhheeeccc--------------hh-----eeeeeEEcCCCC
Confidence 999995 5677777664 23555653221211111110 00 122345689998
Q ss_pred EEEEEeeeCCeeEEEEE
Q 004141 402 TMLLSSIWGSSQVIISV 418 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~ 418 (771)
. +++++.+...++|.-
T Consensus 648 ~-vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 648 F-VVSSSHDKSIRLWER 663 (888)
T ss_pred e-EEeccCCceeEeeec
Confidence 4 467766677777753
No 304
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.002 Score=62.76 Aligned_cols=186 Identities=11% Similarity=0.105 Sum_probs=105.7
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+..||+.|.+||... .+..+.+||..+-.+-++.
T Consensus 27 ~~~~Fs~~G~~lAvGc--------------------------------------------~nG~vvI~D~~T~~iar~l- 61 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGC--------------------------------------------ANGRVVIYDFDTFRIARML- 61 (405)
T ss_pred ceEEeccCcceeeeec--------------------------------------------cCCcEEEEEccccchhhhh-
Confidence 4889999999999853 3367889999887765552
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
...-..+.+++||+||+. |+..+ ++..|-.+|+- .+.-..++. -
T Consensus 62 saH~~pi~sl~WS~dgr~----LltsS---------------~D~si~lwDl~----------------~gs~l~rir-f 105 (405)
T KOG1273|consen 62 SAHVRPITSLCWSRDGRK----LLTSS---------------RDWSIKLWDLL----------------KGSPLKRIR-F 105 (405)
T ss_pred hccccceeEEEecCCCCE----eeeec---------------CCceeEEEecc----------------CCCceeEEE-c
Confidence 334447889999999998 88776 34467778871 333333332 1
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
...+....|.|-.+..+....-+ ..-+++++.......+..+. +++.. .+.....
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~----------~sp~vi~~s~~~h~~Lp~d~-----------d~dln----~sas~~~ 160 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIME----------ESPVVIDFSDPKHSVLPKDD-----------DGDLN----SSASHGV 160 (405)
T ss_pred cCccceeeeccccCCeEEEEEec----------CCcEEEEecCCceeeccCCC-----------ccccc----ccccccc
Confidence 23456677777554444333322 11344454443333332221 11110 0112234
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcEE---EecCCCCCceeeEEeecCCEEEEEE
Q 004141 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGELL---RITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~---~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
|.+-|++|+.. +. +..|-.++..|-+.. +++.. ..+-...++..|+.+++-.
T Consensus 161 fdr~g~yIitG-ts--KGkllv~~a~t~e~vas~rits~-~~IK~I~~s~~g~~liiNt 215 (405)
T KOG1273|consen 161 FDRRGKYIITG-TS--KGKLLVYDAETLECVASFRITSV-QAIKQIIVSRKGRFLIINT 215 (405)
T ss_pred ccCCCCEEEEe-cC--cceEEEEecchheeeeeeeechh-eeeeEEEEeccCcEEEEec
Confidence 77889877543 33 344555566565433 33331 2345567888888777643
No 305
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.00017 Score=63.69 Aligned_cols=114 Identities=20% Similarity=0.290 Sum_probs=79.3
Q ss_pred HHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCC
Q 004141 604 IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP 683 (771)
Q Consensus 604 i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (771)
-+|++++. =+.+..+-|.||||+.|+.+..++|+++..+|+.+++.+...+++..-..+
T Consensus 91 erYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyddD------------------- 149 (227)
T COG4947 91 ERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDDD------------------- 149 (227)
T ss_pred HHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccCc-------------------
Confidence 35777663 245678899999999999999999999999999999998876543221111
Q ss_pred ChhhHHHHhhcCcccccCCC----------CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004141 684 SVEDLTRFHSKSPISHISKV----------KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 747 (771)
Q Consensus 684 ~~~~~~~~~~~sp~~~~~~i----------~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H 747 (771)
.+ ..+|..++..+ ++-+.+..|..|+..+ +.+.+-+.|.++.++..+.+..+..|
T Consensus 150 ------v~-ynsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dKqipaw~~~WggvaH 214 (227)
T COG4947 150 ------VY-YNSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDKQIPAWMHVWGGVAH 214 (227)
T ss_pred ------ee-ecChhhhccCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccccccHHHHHhccccc
Confidence 01 12333333322 2457778899888874 45678888888877777777755555
No 306
>COG3150 Predicted esterase [General function prediction only]
Probab=97.68 E-value=0.00077 Score=59.70 Aligned_cols=142 Identities=17% Similarity=0.219 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccch-hhhhcCCCCCc-chhhhhccCC
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-ALMVGTTDIPD-WCYVESYGSK 674 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~-~~~~~~~~~~~-~~~~~~~~~~ 674 (771)
.....+-++.++++. .....+|+|-|.||+.|.+++.++. ++++ +.+|.+.. ..|.+..+.+. |..-+.+.
T Consensus 42 p~~a~~ele~~i~~~--~~~~p~ivGssLGGY~At~l~~~~G--irav-~~NPav~P~e~l~gylg~~en~ytg~~y~-- 114 (191)
T COG3150 42 PQQALKELEKAVQEL--GDESPLIVGSSLGGYYATWLGFLCG--IRAV-VFNPAVRPYELLTGYLGRPENPYTGQEYV-- 114 (191)
T ss_pred HHHHHHHHHHHHHHc--CCCCceEEeecchHHHHHHHHHHhC--Chhh-hcCCCcCchhhhhhhcCCCCCCCCcceEE--
Confidence 344455555555542 1234899999999999999998864 4443 34554422 12211111111 10000000
Q ss_pred CCccCCCCCChhhHHHHhhcCcccccCCCCCc-EEEEeeCC-CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004141 675 GKDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFLLGAQ-DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~lii~G~~-D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
. ........ ....+..++.| .|.+.... |++....++.+.+... ...+..|+.|.|...
T Consensus 115 -----l---e~~hI~~l----~~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-------~~~V~dgg~H~F~~f 175 (191)
T COG3150 115 -----L---ESRHIATL----CVLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPC-------YEIVWDGGDHKFKGF 175 (191)
T ss_pred -----e---ehhhHHHH----HHhhccccCCCcEEEeecccccHHHHHHHHHHHhhhh-------hheeecCCCccccch
Confidence 0 00111111 11223344444 55555444 9988777766666654 345777889988654
Q ss_pred CChHHHHHHHHHHHH
Q 004141 753 QSDFESFLNIGLWFK 767 (771)
Q Consensus 753 ~~~~~~~~~i~~fl~ 767 (771)
. ..++.|..|..
T Consensus 176 ~---~~l~~i~aF~g 187 (191)
T COG3150 176 S---RHLQRIKAFKG 187 (191)
T ss_pred H---HhHHHHHHHhc
Confidence 3 55778888864
No 307
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.67 E-value=4.3e-05 Score=79.07 Aligned_cols=114 Identities=15% Similarity=0.183 Sum_probs=62.5
Q ss_pred CCCCcEEEEEcCCCCCCCCCcch-HHHHHHHH---CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 609 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~-~~~~~la~---~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 609 (771)
...+|++|++||.........|. .....+.. ..+.|+++|+...... .+..... ........+...|..|..
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~~--n~~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAVA--NTRLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchhh--hHHHHHHHHHHHHHHHHh
Confidence 34689999999976554223333 34444433 5899999998631100 0000000 000012334455666665
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHhhCCC--ceeEEEecCCcc
Q 004141 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLC 651 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~p~~ 651 (771)
...++.++|.|+|||+||++|..++..... ++..+..+.|..
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 445789999999999999999988887665 788888877764
No 308
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.013 Score=56.78 Aligned_cols=238 Identities=13% Similarity=0.069 Sum_probs=116.4
Q ss_pred ceEEEeCCCCCe-EEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSK-LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~-la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....+++|.-.+ ++|.+..+ ...+.++ .+.+...+.....+-| .|+--.|||||++ +|..+....
T Consensus 70 ~Hgi~~~p~~~ravafARrPG---tf~~vfD~~~~~~pv~~~s~~~RH-------fyGHGvfs~dG~~-LYATEndfd-- 136 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPG---TFAMVFDPNGAQEPVTLVSQEGRH-------FYGHGVFSPDGRL-LYATENDFD-- 136 (366)
T ss_pred cCCeecCCCCcceEEEEecCC---ceEEEECCCCCcCcEEEecccCce-------eecccccCCCCcE-EEeecCCCC--
Confidence 345778886555 55544432 2233444 3333333333333333 2345579999985 466554421
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC-CCCCccceEEEecCCCCCccE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~-~~~~~~~~~~wspDg~~~~~~ 257 (771)
..+..|-++|... ...++-.. .......++.|.+||+.
T Consensus 137 ------------------------------------~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrt---- 175 (366)
T COG3490 137 ------------------------------------PNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRT---- 175 (366)
T ss_pred ------------------------------------CCCceEEEEeccc-ccceecccccCCcCcceeEEecCCcE----
Confidence 1457888899763 34444212 22346678999999997
Q ss_pred EEEEee--cCcc--eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecC--CCCccccceeecCCC
Q 004141 258 LVFVGW--SSET--RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLT--ESISSAFFPRFSPDG 328 (771)
Q Consensus 258 l~~~~~--~~~~--~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt--~~~~~~~~p~~SpDG 328 (771)
|+...- +..+ .|.-+..+...+ .|.++|. .+|++ ..|. ....+++....-+||
T Consensus 176 lvvanGGIethpdfgR~~lNldsMeP-Slvlld~-----------------atG~liekh~Lp~~l~~lSiRHld~g~dg 237 (366)
T COG3490 176 LVVANGGIETHPDFGRTELNLDSMEP-SLVLLDA-----------------ATGNLIEKHTLPASLRQLSIRHLDIGRDG 237 (366)
T ss_pred EEEeCCceecccccCccccchhhcCc-cEEEEec-----------------cccchhhhccCchhhhhcceeeeeeCCCC
Confidence 766531 1111 111111111222 4667774 33432 2333 223467888899999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004141 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~ 408 (771)
+. +|..+-. |+.+....|.-.-..++..+.+....... ..|. ..+.+++-..+...+.+++.
T Consensus 238 tv-wfgcQy~----G~~~d~ppLvg~~~~g~~l~~~~~pee~~---------~~~a----nYigsiA~n~~~glV~lTSP 299 (366)
T COG3490 238 TV-WFGCQYR----GPRNDLPPLVGHFRKGEPLEFLDLPEEQT---------AAFA----NYIGSIAANRRDGLVALTSP 299 (366)
T ss_pred cE-EEEEEee----CCCccCCcceeeccCCCcCcccCCCHHHH---------HHHH----hhhhheeecccCCeEEEecC
Confidence 84 4544322 43333334444333333322221111100 0010 11234444444444545544
Q ss_pred eCCeeEEEEEECCCCcEEEecC
Q 004141 409 WGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 409 ~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
.+ +..+.+|.+||.+.....
T Consensus 300 ~G--N~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 300 RG--NRAVIWDAATGAVVSEAA 319 (366)
T ss_pred CC--CeEEEEEcCCCcEEeccc
Confidence 33 345667999999886543
No 309
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.67 E-value=0.002 Score=66.32 Aligned_cols=207 Identities=11% Similarity=0.131 Sum_probs=117.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-chHHHHHHHHCCcEEEEECCCCCCCC-Chhhh---------
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVGYSLLIVNYRGSLGF-GEEAL--------- 585 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-~~~~~~~la~~G~~Vv~~d~rG~~~~-g~~~~--------- 585 (771)
++.++- .+|+|.. ..+...+||++||.+....+.. ...+-..|.+.|+.++++.++.-... -....
T Consensus 70 ~~~~fl-aL~~~~~--~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a 146 (310)
T PF12048_consen 70 GEERFL-ALWRPAN--SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSA 146 (310)
T ss_pred CCEEEE-EEEeccc--CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCC
Confidence 344454 4666653 5667889999999666554433 34455678999999999887751100 00000
Q ss_pred --hcCCCC-----------------ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC-ceeEEE
Q 004141 586 --QSLPGK-----------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAA 645 (771)
Q Consensus 586 --~~~~~~-----------------~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~~~v 645 (771)
...... .-.....-+.+++.++.+++ ..+|+|+||..|++.++.++...+. .+.++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV 223 (310)
T PF12048_consen 147 GDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAARYLAEKPPPMPDALV 223 (310)
T ss_pred CCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHHHHHhcCCCcccCeEE
Confidence 000000 00011223445556666554 3559999999999999999987654 478888
Q ss_pred ecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHH
Q 004141 646 ARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 725 (771)
Q Consensus 646 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~ 725 (771)
++++..... .. .......+.+++.|+|=|++.....+ .....
T Consensus 224 ~I~a~~p~~-------------------------------~~-----n~~l~~~la~l~iPvLDi~~~~~~~~--~~~a~ 265 (310)
T PF12048_consen 224 LINAYWPQP-------------------------------DR-----NPALAEQLAQLKIPVLDIYSADNPAS--QQTAK 265 (310)
T ss_pred EEeCCCCcc-------------------------------hh-----hhhHHHHhhccCCCEEEEecCCChHH--HHHHH
Confidence 887753110 00 01112345678899999998773332 22222
Q ss_pred HHHHHHh-C-CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 726 YARALRE-K-GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 726 ~~~~l~~-~-g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
..+.+.. . ....+-+.+.+..|.... ......++|..|++++
T Consensus 266 ~R~~~a~r~~~~~YrQ~~L~~~~~~~~~--~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 266 QRKQAAKRNKKPDYRQIQLPGLPDNPSG--WQEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHHHHhccCCCceeEecCCCCCChhh--HHHHHHHHHHHHHHhh
Confidence 2222222 2 233555566666664432 2223788999999875
No 310
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.65 E-value=0.0034 Score=61.49 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=67.6
Q ss_pred cccccCCcCcccCCccCceEEEEEc-cCCceeec-c-CCCC----CCccceEEEecCCCCCccEEEEEeecCcceeeeee
Q 004141 201 QGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAV-K-GIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 273 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~-~~~~~~~l-~-~~~~----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~ 273 (771)
...|++| |+++....+..|.++|+ ..|.--.+ + .+.+ ...+..+++||-.... ++..+
T Consensus 163 sL~Fs~D-GeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~---~a~gs----------- 227 (406)
T KOG2919|consen 163 SLQFSPD-GEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKT---LAVGS----------- 227 (406)
T ss_pred eEEecCC-CCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcc---eeeec-----------
Confidence 3446667 44444445678888887 33332111 1 0111 2346678999965541 55544
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccccccee
Q 004141 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 353 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~ 353 (771)
+.+...||..+ ..+.+..|-.+.+.+....|-+||.+|+..++. +..|..
T Consensus 228 --Y~q~~giy~~~------------------~~~pl~llggh~gGvThL~~~edGn~lfsGaRk----------~dkIl~ 277 (406)
T KOG2919|consen 228 --YGQRVGIYNDD------------------GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK----------DDKILC 277 (406)
T ss_pred --ccceeeeEecC------------------CCCceeeecccCCCeeeEEeccCcCeecccccC----------CCeEEE
Confidence 22333566655 445566667778889999999999987544433 356888
Q ss_pred eecCC
Q 004141 354 IDWPT 358 (771)
Q Consensus 354 ~d~~~ 358 (771)
||+..
T Consensus 278 WDiR~ 282 (406)
T KOG2919|consen 278 WDIRY 282 (406)
T ss_pred Eeehh
Confidence 88754
No 311
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.63 E-value=0.0047 Score=67.04 Aligned_cols=297 Identities=10% Similarity=0.043 Sum_probs=152.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CcceEEEecCCcccccccCCCcccceeecCC-----CCeEEEEe
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSD-----ETLIAYVA 171 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD-----g~~la~~~ 171 (771)
..+....+++|+..++++.++. +..+|+- .+..++..+..... +..+-++ |.++..++
T Consensus 193 S~vtsL~~~~d~~~~ls~~RDk-----vi~vwd~~~~~~l~~lp~ye~~E----------~vv~l~~~~~~~~~~~~TaG 257 (775)
T KOG0319|consen 193 SAVTSLAFSEDSLELLSVGRDK-----VIIVWDLVQYKKLKTLPLYESLE----------SVVRLREELGGKGEYIITAG 257 (775)
T ss_pred hheeeeeeccCCceEEEeccCc-----EEEEeehhhhhhhheechhhhee----------eEEEechhcCCcceEEEEec
Confidence 4578899999999998875544 7888843 23334444433442 3333333 33444444
Q ss_pred cCCCCCCCCccCCCCCCCCCCccCC-CCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceE-EEec
Q 004141 172 EEPSPSKPTFSLGSTKGGSSDKDCN-SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQV-VWAP 249 (771)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~-~wsp 249 (771)
+....+ +|.........+..... .-.......+.-+..+......+|+++|.++.++..-. ...+..+.+. .|-|
T Consensus 258 ~~g~~~--~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-vG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 258 GSGVVQ--YWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-VGYNDEILDMKFLGP 334 (775)
T ss_pred CCceEE--EEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh-cCCchhheeeeecCC
Confidence 333221 22211111110000000 00111222222233333445688999998888764431 2222234444 3677
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC
Q 004141 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 329 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~ 329 (771)
+.+. |+..+|. .+|.++++ .+..+.-+..+...+.+...+-+|-
T Consensus 335 e~~~----laVATNs---------------~~lr~y~~-----------------~~~~c~ii~GH~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 335 EESH----LAVATNS---------------PELRLYTL-----------------PTSYCQIIPGHTEAVLSLDVWSSGD 378 (775)
T ss_pred ccce----EEEEeCC---------------CceEEEec-----------------CCCceEEEeCchhheeeeeecccCc
Confidence 7776 7777643 24555576 5666666666666666666445565
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCC------------------------CCCCCCccceeeEEecccccC--CCCC
Q 004141 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPT------------------------NGNFSSLEKIVDVIPVVQCAE--GDCF 383 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~------------------------~~~~~~~~~~~~~~~~~~~~~--~~~f 383 (771)
.|+..+.+. ...||++|-.. +....++.+.+-++++|..++ +..|
T Consensus 379 llat~sKD~---------svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 379 LLATGSKDK---------SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred EEEEecCCc---------eEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 555544443 22344442111 111122333445677777665 2233
Q ss_pred ccc---------ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE-ecCCCCCceeeEEeecCCEEEEEEeC
Q 004141 384 PGL---------YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 384 ~g~---------~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~~~~~~~~~s~dg~~l~~~~~~ 453 (771)
|-. ++-.+..++.+|+.+ |+.+.+.+....||.++ .+.+.- |....-.+....|++..+ +++++|+
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le--~~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~Sg 525 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLE--QLRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSG 525 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeeccc--CceEEEEeeCCccceEEEEeccccc-eeEeccC
Confidence 321 233467888999987 77888888888999776 344443 333333444556776544 4455544
Q ss_pred CCCCCeEEEE
Q 004141 454 PVDVPQVKYG 463 (771)
Q Consensus 454 ~~~p~~l~~~ 463 (771)
- ..-.||-+
T Consensus 526 D-~TvKIW~i 534 (775)
T KOG0319|consen 526 D-KTVKIWSI 534 (775)
T ss_pred C-ceEEEEEe
Confidence 3 33445543
No 312
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.63 E-value=6.4e-05 Score=50.62 Aligned_cols=29 Identities=38% Similarity=0.592 Sum_probs=24.1
Q ss_pred eecCCCCccccceeecCCCCEEEEEecCC
Q 004141 310 VNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 310 ~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++++........|.|||||++|+|.+++.
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCC
Confidence 56777888899999999999999999886
No 313
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.63 E-value=0.0035 Score=70.93 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=61.0
Q ss_pred CeEEEEecCCCCCCeEEEEe-cCCcceEE-EecCCcccccccCCCcccceeecCCCCeEEE-EecCCCCCCCCccCCCCC
Q 004141 111 SKLLVVRNPENESPIQFELW-SQSQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAY-VAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~-~~~~~~~~~~~~~~~~~~ 187 (771)
.+|||+.+.. + .+..++ ++.+.+.+ +.....+ -.|.|||||++||| ++.....
T Consensus 319 tkiAfv~~~~-~--~L~~~D~dG~n~~~ve~~~~~~i----------~sP~~SPDG~~vAY~ts~e~~~----------- 374 (912)
T TIGR02171 319 AKLAFRNDVT-G--NLAYIDYTKGASRAVEIEDTISV----------YHPDISPDGKKVAFCTGIEGLP----------- 374 (912)
T ss_pred eeEEEEEcCC-C--eEEEEecCCCCceEEEecCCCce----------ecCcCCCCCCEEEEEEeecCCC-----------
Confidence 4799987643 1 688888 55566555 4443333 48999999999999 6544311
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004141 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+.+.||+.|+.+.. +..|. -....+-.......|... |+|++.-
T Consensus 375 ----------------------------g~s~vYv~~L~t~~~~~vkl~--ve~aaiprwrv~e~gdt~---ivyv~~a 420 (912)
T TIGR02171 375 ----------------------------GKSSVYVRNLNASGSGLVKLP--VENAAIPRWRVLENGDTV---IVYVSDA 420 (912)
T ss_pred ----------------------------CCceEEEEehhccCCCceEee--cccccccceEecCCCCeE---EEEEcCC
Confidence 34789999987654 34441 122233334456777764 8888743
No 314
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.62 E-value=0.0011 Score=69.14 Aligned_cols=159 Identities=23% Similarity=0.290 Sum_probs=86.6
Q ss_pred cCCccCceEEEEEccCCceeeccC---CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004141 212 YAGKRQPSLFVININSGEVQAVKG---IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~---~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
+.+....+++++|....++.+|-+ .-....+....|-|.++. ++.++... | .||.+|..
T Consensus 189 lIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~----~Fl~a~~s-----G---------nlyly~~~ 250 (636)
T KOG2394|consen 189 LIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDS----LFLVAHAS-----G---------NLYLYDKE 250 (636)
T ss_pred EEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCc----eEEEEEec-----C---------ceEEeecc
Confidence 334455677777766555555410 111235677899998888 77776322 2 34444320
Q ss_pred c--c--------cchhhhhhhhcCCC--CCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004141 289 L--Y--------KSEASELELKESSS--EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 289 ~--~--------~~~~~~~~~~~~~~--~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
- . .++....++.+.+. .-..+.+..-..+.+....|||||++||.++++. -|.++|.
T Consensus 251 ~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDG-----------fLRvF~f 319 (636)
T KOG2394|consen 251 IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDG-----------FLRIFDF 319 (636)
T ss_pred ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCc-----------eEEEeec
Confidence 0 0 00000111111111 1122233334455788899999999999999884 2666676
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
.+.+..-+.. ..|- ++--++||||||+|+ +...++-..+|.+.
T Consensus 320 dt~eLlg~mk--------------SYFG-----GLLCvcWSPDGKyIv-tGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 320 DTQELLGVMK--------------SYFG-----GLLCVCWSPDGKYIV-TGGEDDLVTVWSFE 362 (636)
T ss_pred cHHHHHHHHH--------------hhcc-----ceEEEEEcCCccEEE-ecCCcceEEEEEec
Confidence 6644322211 1233 344579999999774 44455566777654
No 315
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.61 E-value=0.0051 Score=70.39 Aligned_cols=224 Identities=16% Similarity=0.216 Sum_probs=125.1
Q ss_pred cceEEEeCCCCCeEEEEecCCC-----CCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPEN-----ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
....+..+|+|+.++|+...-+ ....+|... ... .+........ ..+.|||||+.+++.....
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-~~~-~~~~~~~~~~----------~~~~~spdg~~~~~~~~~~ 81 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSD-GKT-VRLLTFGGGV----------SELRWSPDGSVLAFVSTDG 81 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEEe-ccc-ccccccCCcc----------cccccCCCCCEEEEEeccC
Confidence 4667899999999999987511 223344322 111 1112212222 5889999999999986222
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004141 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
. ...++|+++.. + .+ ......+....|+|+|+.
T Consensus 82 ~----------------------------------------~~~~l~l~~~~-g---~~--~~~~~~v~~~~~~~~g~~- 114 (620)
T COG1506 82 G----------------------------------------RVAQLYLVDVG-G---LI--TKTAFGVSDARWSPDGDR- 114 (620)
T ss_pred C----------------------------------------CcceEEEEecC-C---ce--eeeecccccceeCCCCCe-
Confidence 1 24789999988 4 33 233456778899999999
Q ss_pred ccEEEEEeecCcceeeee----------eeec-c-CCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccce
Q 004141 255 HQYLVFVGWSSETRKLGI----------KYCY-N-RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFP 322 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~----------~~~~-~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p 322 (771)
+++..-.....+.+. .+.. . ...++|.+|. .+ ....+......+..+
T Consensus 115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~-----------------~~-~~~~~~~~~~~~~~~ 173 (620)
T COG1506 115 ---IAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDI-----------------ES-KLIKLGLGNLDVVSF 173 (620)
T ss_pred ---EEEEecccccccCCceeeeecccceeecCCCCcccceEEEcc-----------------Cc-ccccccCCCCceeee
Confidence 998432222111111 1111 1 3457888886 33 555555666667778
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004141 323 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 323 ~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~ 402 (771)
+++++++.++......... ......+.....++....++.+.. +...+.|.+||+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~gk~ 229 (620)
T COG1506 174 ATDGDGRLVASIRLDDDAD----PWVTNLYVLIEGNGELESLTPGEG--------------------SISKLAFDADGKS 229 (620)
T ss_pred eeCCCCceeEEeeeccccC----CceEeeEEEecCCCceEEEcCCCc--------------------eeeeeeeCCCCCe
Confidence 8888888777776654210 111223333323333333322211 2346678899997
Q ss_pred EEEEeeeCC-----eeEEEEEECCCCcEEE
Q 004141 403 MLLSSIWGS-----SQVIISVNVSSGELLR 427 (771)
Q Consensus 403 l~~~~~~~~-----~~~l~~~d~~tg~~~~ 427 (771)
+++...... ...++.++...++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 259 (620)
T COG1506 230 IALLGTESDRGLAEGDFILLLDGELGEVDG 259 (620)
T ss_pred eEEeccCCccCccccceEEEEeccccccce
Confidence 776665332 1235555534454444
No 316
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.61 E-value=0.0074 Score=62.64 Aligned_cols=154 Identities=17% Similarity=0.096 Sum_probs=85.4
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
....+|+|.++.....+ ......+.-+.+||||.. |+..+ .+..||++.++.
T Consensus 427 ~G~w~V~d~e~~~lv~~--~~d~~~ls~v~ysp~G~~----lAvgs---------------~d~~iyiy~Vs~------- 478 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTI--HTDNEQLSVVRYSPDGAF----LAVGS---------------HDNHIYIYRVSA------- 478 (626)
T ss_pred cceEEEEecccceeEEE--EecCCceEEEEEcCCCCE----EEEec---------------CCCeEEEEEECC-------
Confidence 36789999998776666 333556778899999998 88876 223555555531
Q ss_pred hhhhcCCCCCCcceecCCCC-ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe-c
Q 004141 297 LELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP-V 374 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~~-~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~-~ 374 (771)
++....++-... ..+....||+|+++|.-.+.+ .+|..| ..++..+++.-. ++.- .
T Consensus 479 --------~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d-----------~eiLyW--~~~~~~~~ts~k-DvkW~t 536 (626)
T KOG2106|consen 479 --------NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD-----------YEILYW--KPSECKQITSVK-DVKWAT 536 (626)
T ss_pred --------CCcEEEEeeeecCceeEEeeecCCCceEEeccCc-----------eEEEEE--ccccCcccceec-ceeeee
Confidence 334444443222 457889999999987654432 455555 344444444311 1000 0
Q ss_pred ccccC-CCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 375 VQCAE-GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 375 ~~~~~-~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
..+.- -.-|-|.....+...+-|.+.+ |+.+....+..+||++...
T Consensus 537 ~~c~lGF~v~g~s~~t~i~a~~rs~~~~-~lA~gdd~g~v~lf~yPc~ 583 (626)
T KOG2106|consen 537 YTCTLGFEVFGGSDGTDINAVARSHCEK-LLASGDDFGKVHLFSYPCS 583 (626)
T ss_pred eEEEEEEEEecccCCchHHHhhhhhhhh-hhhccccCceEEEEccccC
Confidence 00000 0001111222234445565655 5566666778888887653
No 317
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.59 E-value=0.00024 Score=70.23 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=86.5
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..|+++|+..+.+..- .--...-..++|+| +. ..|++ .+.+..||.+|.-
T Consensus 208 sDrsIvLyD~R~~~Pl~K--Vi~~mRTN~IswnP--ea----fnF~~-------------a~ED~nlY~~DmR------- 259 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKK--VILTMRTNTICWNP--EA----FNFVA-------------ANEDHNLYTYDMR------- 259 (433)
T ss_pred cCCceEEEecccCCccce--eeeeccccceecCc--cc----cceee-------------ccccccceehhhh-------
Confidence 457899999987765332 12233455789999 33 55665 2355589999971
Q ss_pred hhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 296 ELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
.-..+..+. ++-..+.++.|||.|+-++-.+.+. .|.++....+..+.+-...
T Consensus 260 ---------~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-----------sIRIf~~~~~~SRdiYhtk------ 313 (433)
T KOG0268|consen 260 ---------NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-----------SIRIFPVNHGHSRDIYHTK------ 313 (433)
T ss_pred ---------hhcccchhhcccceeEEEeccCCCcchhccccccc-----------eEEEeecCCCcchhhhhHh------
Confidence 112222222 2334588999999999998777765 3666665554443221110
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
-...+..+.||-|+++| ++.+++++.+||.-+.
T Consensus 314 ------------RMq~V~~Vk~S~Dskyi-~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 314 ------------RMQHVFCVKYSMDSKYI-ISGSDDGNVRLWKAKA 346 (433)
T ss_pred ------------hhheeeEEEEeccccEE-EecCCCcceeeeecch
Confidence 01134567899999855 6777888889998654
No 318
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.58 E-value=0.01 Score=61.88 Aligned_cols=170 Identities=12% Similarity=0.194 Sum_probs=97.2
Q ss_pred ccceEEEeCCC--CCeEEEEecCCCCCCeEEEEe--cCCcceEEEec--CCcccccccCCCcccceeecCCCCeEEEEec
Q 004141 99 TGASAVVPSPS--GSKLLVVRNPENESPIQFELW--SQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPd--G~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
.++...+|||- +..|||..-...+......++ ..+.....-.+ ..++ .+.|.+.|++|.+...
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~-----------qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV-----------QLKWQVLGKYLLVLVM 242 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc-----------EEEEecCCceEEEEEE
Confidence 45788999996 445677654433444334444 11222111111 2233 7899999999999876
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
...... .++. +...||++++....++.. ......+.+++|+|+++
T Consensus 243 t~~ksn-----------------Ksyf----------------gesnLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~ 287 (561)
T COG5354 243 THTKSN-----------------KSYF----------------GESNLYLLRITERSIPVE--KDLKDPVHDFTWEPLSS 287 (561)
T ss_pred Eeeecc-----------------ccee----------------ccceEEEEeeccccccee--ccccccceeeeecccCC
Confidence 543110 0000 237899999885554443 23345688999999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
+ .+.++-- -+..+-..|+ .+.-.-.+. ...-..+.|||.+++|+
T Consensus 288 ~----F~vi~g~-------------~pa~~s~~~l-----------------r~Nl~~~~P--e~~rNT~~fsp~~r~il 331 (561)
T COG5354 288 R----FAVISGY-------------MPASVSVFDL-----------------RGNLRFYFP--EQKRNTIFFSPHERYIL 331 (561)
T ss_pred c----eeEEecc-------------cccceeeccc-----------------ccceEEecC--CcccccccccCcccEEE
Confidence 9 7776511 2224555555 333212222 22234578999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+..-+.. ...+-++|..+
T Consensus 332 ~agF~nl--------~gni~i~~~~~ 349 (561)
T COG5354 332 FAGFDNL--------QGNIEIFDPAG 349 (561)
T ss_pred EecCCcc--------ccceEEeccCC
Confidence 9776542 23466666544
No 319
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.57 E-value=0.00096 Score=66.20 Aligned_cols=250 Identities=14% Similarity=0.127 Sum_probs=140.1
Q ss_pred ceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC--ceeecc
Q 004141 157 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVK 234 (771)
Q Consensus 157 ~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--~~~~l~ 234 (771)
..-+.|+...++..+++.+.+ .|+...++.......+..-...+.|...+.....-..+-.+.+||.++- ..+.+
T Consensus 113 ~v~~hp~~~~v~~as~d~tik--v~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~- 189 (406)
T KOG0295|consen 113 RVIFHPSEALVVSASEDATIK--VFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL- 189 (406)
T ss_pred eeeeccCceEEEEecCCceEE--EEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh-
Confidence 444556554444433444332 1222222222222333333344555555333333333444788887763 23333
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecC
Q 004141 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT 313 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt 313 (771)
...+..+..+.+-|-|.. |+-.+ ++..|..+++ +++. ..+++
T Consensus 190 -~gh~h~vS~V~f~P~gd~----ilS~s---------------rD~tik~We~-----------------~tg~cv~t~~ 232 (406)
T KOG0295|consen 190 -IGHEHGVSSVFFLPLGDH----ILSCS---------------RDNTIKAWEC-----------------DTGYCVKTFP 232 (406)
T ss_pred -cCcccceeeEEEEecCCe----eeecc---------------cccceeEEec-----------------ccceeEEecc
Confidence 455667889999999987 77655 4446778887 5565 45667
Q ss_pred CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004141 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
.+..-+...+.+-||+.|+-.+++. .|.+|-+.+++-+.+..+...+++.+........| ++..
T Consensus 233 ~h~ewvr~v~v~~DGti~As~s~dq-----------tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~-----~i~~ 296 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQDGTIIASCSNDQ-----------TLRVWVVATKQCKAELREHEHPVECIAWAPESSYP-----SISE 296 (406)
T ss_pred CchHhEEEEEecCCeeEEEecCCCc-----------eEEEEEeccchhhhhhhccccceEEEEecccccCc-----chhh
Confidence 6666788999999999877666553 46667667765444433333333333222222222 2222
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 394 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 394 ~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
..-+.|+..++++.+++...++| |+.+|... .|......+...+|+|.|++|+-++.+ ..|.+.++...
T Consensus 297 at~~~~~~~~l~s~SrDktIk~w--dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD----ktlrvwdl~~~ 366 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIW--DVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD----KTLRVWDLKNL 366 (406)
T ss_pred ccCCCCCccEEEeecccceEEEE--eccCCeEEEEEecccceeeeeEEcCCCeEEEEEecC----CcEEEEEeccc
Confidence 33344566677888888777777 55577533 333444456778999999988766643 23556666544
No 320
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.56 E-value=0.00032 Score=76.87 Aligned_cols=111 Identities=21% Similarity=0.191 Sum_probs=67.1
Q ss_pred CcEEEEEcCCCCCCCCC--cchHHHHHHHHCCcEEEEECCCCCCCCChhhhh------cCCCCccccchhhHHHHHHHHH
Q 004141 537 DPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ------SLPGKVGSQDVNDVLTAIDHVI 608 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~------~~~~~~~~~~~~D~~~~i~~l~ 608 (771)
.|++|++-| -+..... ..........+.|-.|++.++|- ||.+... .+..-...+.++|+...++++.
T Consensus 29 gpifl~~gg-E~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~ 104 (434)
T PF05577_consen 29 GPIFLYIGG-EGPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK 104 (434)
T ss_dssp SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence 788888754 2221100 01122333456799999999997 6665421 1111122345789999999988
Q ss_pred HcC-CCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 609 DMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 609 ~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
.+. ..+..+++++|.|+||.+|+++-.++|+.+.++++.++++
T Consensus 105 ~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv 148 (434)
T PF05577_consen 105 KKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPV 148 (434)
T ss_dssp HHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--C
T ss_pred HhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEecccee
Confidence 653 2355699999999999999999999999999998887655
No 321
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.56 E-value=0.0059 Score=65.66 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=99.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-c--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-S--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+...++|.+.++||..+..+ .+++| . +--...++..+. |..+.+++|++.|+ |..+.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g-----~IEiwN~~~~w~~~~vi~g~~--------drsIE~L~W~e~~R-LFS~g---- 87 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDG-----NIEIWNLSNNWFLEPVIHGPE--------DRSIESLAWAEGGR-LFSSG---- 87 (691)
T ss_pred cceEEEEEeccCCceeeeccCC-----cEEEEccCCCceeeEEEecCC--------CCceeeEEEccCCe-EEeec----
Confidence 4578899999999999877654 56677 2 223344444422 22347999995554 54431
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
....|.-||+.+++.+.-. -.....+.+.+.+|-++.
T Consensus 88 ----------------------------------------~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~-- 124 (691)
T KOG2048|consen 88 ----------------------------------------LSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTI-- 124 (691)
T ss_pred ----------------------------------------CCceEEEEecccCceeEEe-cCCCcceeEEEeCCccce--
Confidence 3468899999988876552 223335667777787775
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCEEE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
++.. |.+ +.|+.++. ..+.. +.|-...+.+.+..|+|+|.+|+
T Consensus 125 --l~Ig-------------cdd--Gvl~~~s~-----------------~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 125 --LAIG-------------CDD--GVLYDFSI-----------------GPDKITYKRSLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred --EEee-------------cCC--ceEEEEec-----------------CCceEEEEeecccccceEEEEEecCCccEEE
Confidence 5544 323 26666665 44432 22333346788999999999998
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
-.+.+ ..|.+||...+..
T Consensus 171 ~Gs~D-----------g~Iriwd~~~~~t 188 (691)
T KOG2048|consen 171 GGSID-----------GVIRIWDVKSGQT 188 (691)
T ss_pred ecccC-----------ceEEEEEcCCCce
Confidence 65544 3478888877664
No 322
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.54 E-value=0.00023 Score=68.53 Aligned_cols=89 Identities=25% Similarity=0.448 Sum_probs=53.4
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCcE---EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~~---Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
|||+||.... ....|......|.++||. |++++|-..... ....... .......++.++|+.+++. ...
T Consensus 4 VVlVHG~~~~-~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~--~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa- 75 (219)
T PF01674_consen 4 VVLVHGTGGN-AYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGS--PSVQNAH--MSCESAKQLRAFIDAVLAY--TGA- 75 (219)
T ss_dssp EEEE--TTTT-TCGGCCHHHHHHHHTT--CCCEEEE--S-CCHH--THHHHHH--B-HHHHHHHHHHHHHHHHH--HT--
T ss_pred EEEECCCCcc-hhhCHHHHHHHHHHcCCCcceeEeccCCCCCCC--Ccccccc--cchhhHHHHHHHHHHHHHh--hCC-
Confidence 8999996542 245788899999999999 899998542210 1111000 1112346777778877765 235
Q ss_pred eEEEEEcChhHHHHHHHHhh
Q 004141 617 KVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~ 636 (771)
+|-|+||||||.++-+++.-
T Consensus 76 kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp -EEEEEETCHHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHHH
Confidence 89999999999999888753
No 323
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.54 E-value=0.0028 Score=69.60 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=69.7
Q ss_pred CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 213 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
..-....|.++|..+.++.+.- ......+.++.|||||++ |+..+ -++.|..+|+
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f-~gh~nritd~~FS~DgrW----lisas---------------mD~tIr~wDl----- 605 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREF-WGHGNRITDMTFSPDGRW----LISAS---------------MDSTIRTWDL----- 605 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHh-hccccceeeeEeCCCCcE----EEEee---------------cCCcEEEEec-----
Confidence 3445678999999888765551 223447889999999999 99887 3457999998
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeee
Q 004141 293 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d 355 (771)
.++...-...-...+.+.+|||.|..||....+. ..||+|.
T Consensus 606 ------------pt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~----------~gIylWs 646 (910)
T KOG1539|consen 606 ------------PTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQ----------NGIYLWS 646 (910)
T ss_pred ------------cCcceeeeEecCCcceeeEECCCCCEEEEEEecC----------ceEEEEE
Confidence 5555443333345578899999999999887663 3478774
No 324
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.51 E-value=0.0063 Score=58.06 Aligned_cols=209 Identities=17% Similarity=0.179 Sum_probs=110.2
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCC-----cEEEEECCCCCCCC----ChhhhhcC-------CCCccccchhh
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG-----YSLLIVNYRGSLGF----GEEALQSL-------PGKVGSQDVND 599 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G-----~~Vv~~d~rG~~~~----g~~~~~~~-------~~~~~~~~~~D 599 (771)
..| .||+||.++.. ..+...+..|...+ -.++.+|--|+-.. .....+.. ....+.....=
T Consensus 45 ~iP-TIfIhGsgG~a--sS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIP-TIFIHGSGGTA--SSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccc-eEEEecCCCCh--hHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 345 67899966653 35556666665554 45667776664221 11111100 00011111233
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC-----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004141 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
+..++.+|.++.. -.++-++||||||.....++..+.+ .+...|.+++.++...........+
T Consensus 122 lk~~msyL~~~Y~--i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~---------- 189 (288)
T COG4814 122 LKKAMSYLQKHYN--IPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTD---------- 189 (288)
T ss_pred HHHHHHHHHHhcC--CceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchhe----------
Confidence 5567788888864 4679999999999999999886521 2444454444433111111000000
Q ss_pred CCccCCCCC--ChhhHHHHhhcCcccccCCC--CCcEEEEeeCCC------CccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 675 GKDSFTESP--SVEDLTRFHSKSPISHISKV--KTPTIFLLGAQD------LRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 675 ~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i--~~P~lii~G~~D------~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.....+ .......|+.. ...++ .+-+|+|.|+-| -.||...+...+..|...+...+-.+|+|
T Consensus 190 ---v~~~~~~~~~t~y~~y~~~----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~G 262 (288)
T COG4814 190 ---VLKDGPGLIKTPYYDYIAK----NYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKG 262 (288)
T ss_pred ---eeccCccccCcHHHHHHHh----cceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeC
Confidence 000000 00011111111 11112 356999999865 45888888888888887766655545554
Q ss_pred --CCccCCCCCChHHHHHHHHHHHHH
Q 004141 745 --DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 745 --~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+.|.-. +++. .+...+..||-+
T Consensus 263 k~a~Hs~l-hen~-~v~~yv~~FLw~ 286 (288)
T COG4814 263 KDARHSKL-HENP-TVAKYVKNFLWE 286 (288)
T ss_pred Ccchhhcc-CCCh-hHHHHHHHHhhc
Confidence 568644 3333 566777777743
No 325
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.51 E-value=0.00086 Score=66.51 Aligned_cols=211 Identities=13% Similarity=0.068 Sum_probs=125.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc-c---eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ-L---EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
..+..++|+..|+.||-.+.+- . ..+|+..+ . +.+...... .+.+.|-|-|.+|+..+.+.
T Consensus 151 ~sv~di~~~a~Gk~l~tcSsDl--~---~~LWd~~~~~~c~ks~~gh~h~----------vS~V~f~P~gd~ilS~srD~ 215 (406)
T KOG0295|consen 151 DSVFDISFDASGKYLATCSSDL--S---AKLWDFDTFFRCIKSLIGHEHG----------VSSVFFLPLGDHILSCSRDN 215 (406)
T ss_pred cceeEEEEecCccEEEecCCcc--c---hhheeHHHHHHHHHHhcCcccc----------eeeEEEEecCCeeeeccccc
Confidence 4588899999999988765432 1 33442221 1 111111222 26889999999998887776
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004141 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
..+ .|....+-.......+..|..-+....|+.-.........|.+|-+++++.+.+. ...+..+.-.+|.|....-
T Consensus 216 tik--~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l-R~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 216 TIK--AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL-REHEHPVECIAWAPESSYP 292 (406)
T ss_pred cee--EEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh-hccccceEEEEecccccCc
Confidence 654 3433333333444555667766666777544445556789999999988654442 3334445556676653220
Q ss_pred ccEEEEEeecCcceeeeeee--eccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEE
Q 004141 255 HQYLVFVGWSSETRKLGIKY--CYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~--~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
.|-+.+ +...|..+ ...++..|-.+|+ .++. +-.|..+..-+.+.+|||-|++|
T Consensus 293 --~i~~at----~~~~~~~~l~s~SrDktIk~wdv-----------------~tg~cL~tL~ghdnwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 293 --SISEAT----GSTNGGQVLGSGSRDKTIKIWDV-----------------STGMCLFTLVGHDNWVRGVAFSPGGKYI 349 (406)
T ss_pred --chhhcc----CCCCCccEEEeecccceEEEEec-----------------cCCeEEEEEecccceeeeeEEcCCCeEE
Confidence 011100 00000001 1124456777787 5554 35566777779999999999999
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+-...+. .|.+||+++.+-
T Consensus 350 ~ScaDDk-----------tlrvwdl~~~~c 368 (406)
T KOG0295|consen 350 LSCADDK-----------TLRVWDLKNLQC 368 (406)
T ss_pred EEEecCC-----------cEEEEEecccee
Confidence 8887664 488999887654
No 326
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.50 E-value=0.023 Score=57.13 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=83.4
Q ss_pred CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCc
Q 004141 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESIS 317 (771)
Q Consensus 239 ~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~ 317 (771)
...+.++.|++ ... ++-++|.+ .|..+|+ .++. ...++ ...
T Consensus 260 t~~Vs~V~w~d-~~v----~yS~SwDH---------------TIk~WDl-----------------etg~~~~~~~-~~k 301 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATV----IYSVSWDH---------------TIKVWDL-----------------ETGGLKSTLT-TNK 301 (423)
T ss_pred ccceeeEEEcC-CCc----eEeecccc---------------eEEEEEe-----------------ecccceeeee-cCc
Confidence 34678899998 333 55555533 5788888 4444 34444 344
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.......+|.-+.|+-.+.+ ..|.++|..++....+.. .|-| +..-+..+.|+
T Consensus 302 sl~~i~~~~~~~Ll~~gssd-----------r~irl~DPR~~~gs~v~~---------------s~~g-H~nwVssvkws 354 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSSD-----------RHIRLWDPRTGDGSVVSQ---------------SLIG-HKNWVSSVKWS 354 (423)
T ss_pred ceeEeecccccceeeecCCC-----------CceeecCCCCCCCceeEE---------------eeec-chhhhhheecC
Confidence 56778889988877655544 358899987765422111 1112 11236688999
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC
Q 004141 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 432 (771)
Q Consensus 398 ~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~ 432 (771)
|-..+++++.+.++...||-+.-..+-+..|....
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~ 389 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN 389 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccCC
Confidence 99999999999999999997665555566665543
No 327
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.50 E-value=0.0035 Score=65.40 Aligned_cols=167 Identities=12% Similarity=0.099 Sum_probs=101.4
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+-.|||||.-|+.+.++ ..|-+|.-.+--...+
T Consensus 108 ~~gRW~~dGtgLlt~GED--------------------------------------------G~iKiWSrsGMLRStl-- 141 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGED--------------------------------------------GVIKIWSRSGMLRSTV-- 141 (737)
T ss_pred hhcccCCCCceeeeecCC--------------------------------------------ceEEEEeccchHHHHH--
Confidence 577899999999887554 3556666433222223
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
......+..++|.|++.. ++|.. ..++++-.+. ...++.+-..+
T Consensus 142 ~Q~~~~v~c~~W~p~S~~----vl~c~----------------g~h~~IKpL~----------------~n~k~i~WkAH 185 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNS----IVFCQ----------------GGHISIKPLA----------------ANSKIIRWRAH 185 (737)
T ss_pred hhcCceeEEEEECCCCCc----eEEec----------------CCeEEEeecc----------------cccceeEEecc
Confidence 334456778999999999 99974 1278887772 33455666678
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
.+-+.+..|||....|+-...+ .+-.+||..+... .++.. ..+ -+.+++
T Consensus 186 DGiiL~~~W~~~s~lI~sgGED-----------~kfKvWD~~G~~L--f~S~~------------~ey------~ITSva 234 (737)
T KOG1524|consen 186 DGLVLSLSWSTQSNIIASGGED-----------FRFKIWDAQGANL--FTSAA------------EEY------AITSVA 234 (737)
T ss_pred CcEEEEeecCccccceeecCCc-----------eeEEeecccCccc--ccCCh------------hcc------ceeeee
Confidence 8889999999998876643322 3455666443222 22111 111 256888
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-CCCCceeeEEeecCCEEEEEE
Q 004141 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~dg~~l~~~~ 451 (771)
|.|| + +|.. |.++. -++.. ..+.+....||+||.++.+..
T Consensus 235 ~npd-~-~~~v---------~S~nt-----~R~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 235 FNPE-K-DYLL---------WSYNT-----ARFSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred eccc-c-ceee---------eeeee-----eeecCCCccceEEEEEcCCCceeeccc
Confidence 9999 3 4332 22221 11322 233455678888888776544
No 328
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=97.49 E-value=0.00021 Score=76.60 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=64.6
Q ss_pred CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH
Q 004141 553 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH 632 (771)
Q Consensus 553 ~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 632 (771)
..|...++.|.+.||.+ ..|++| +|.+|+... .....++++.+.++.+.+.. ...+|.|+||||||.++..
T Consensus 108 ~~~~~li~~L~~~GY~~-~~dL~g---~gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~ 178 (440)
T PLN02733 108 YYFHDMIEQLIKWGYKE-GKTLFG---FGYDFRQSN---RLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKC 178 (440)
T ss_pred HHHHHHHHHHHHcCCcc-CCCccc---CCCCccccc---cHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHH
Confidence 45778899999999876 789998 666665421 11223566777777766552 3468999999999999999
Q ss_pred HHhhCCCc----eeEEEecCCcc
Q 004141 633 LIGQAPDK----FVAAAARNPLC 651 (771)
Q Consensus 633 ~a~~~p~~----~~~~v~~~p~~ 651 (771)
++..+|+. ++.+|++++..
T Consensus 179 fl~~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 179 FMSLHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred HHHHCCHhHHhHhccEEEECCCC
Confidence 99888763 56667666533
No 329
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.49 E-value=0.027 Score=58.64 Aligned_cols=260 Identities=12% Similarity=0.094 Sum_probs=135.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+...+|.++|+-|- . ++...+.+| .++. +++.......| .+.++.--.||+.|- ...+. +
T Consensus 247 k~Vl~v~F~engdviT--g----DS~G~i~Iw~~~~~--~~~k~~~aH~g------gv~~L~~lr~GtllS-GgKDR--k 309 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVIT--G----DSGGNILIWSKGTN--RISKQVHAHDG------GVFSLCMLRDGTLLS-GGKDR--K 309 (626)
T ss_pred eEEEEEEEcCCCCEEe--e----cCCceEEEEeCCCc--eEEeEeeecCC------ceEEEEEecCccEee-cCccc--e
Confidence 4578889999998653 1 333467778 3332 22211111112 225777888887554 22211 1
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
-..|+....+..+. +-+......-..-+..++.+++..++.|..=.++++-...+. -.......++-.|+...
T Consensus 310 i~~Wd~~y~k~r~~-elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~--gh~delwgla~hps~~q---- 382 (626)
T KOG2106|consen 310 IILWDDNYRKLRET-ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ--GHGDELWGLATHPSKNQ---- 382 (626)
T ss_pred EEeccccccccccc-cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE--ecccceeeEEcCCChhh----
Confidence 23344222211111 101111111112233355777777777777677666433331 11124556777888776
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
++..+- ..++.+++- .--+-.++.. .......|.|-| .|+.-...
T Consensus 383 ~~T~gq---------------dk~v~lW~~-----------------~k~~wt~~~~--d~~~~~~fhpsg-~va~Gt~~ 427 (626)
T KOG2106|consen 383 LLTCGQ---------------DKHVRLWND-----------------HKLEWTKIIE--DPAECADFHPSG-VVAVGTAT 427 (626)
T ss_pred eeeccC---------------cceEEEccC-----------------CceeEEEEec--CceeEeeccCcc-eEEEeecc
Confidence 665541 123444431 1122233333 235667899999 66654433
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
.+.+++|.++.....+-... ..+.-+.|+|||..|.+. +.++...||+
T Consensus 428 -----------G~w~V~d~e~~~lv~~~~d~--------------------~~ls~v~ysp~G~~lAvg-s~d~~iyiy~ 475 (626)
T KOG2106|consen 428 -----------GRWFVLDTETQDLVTIHTDN--------------------EQLSVVRYSPDGAFLAVG-SHDNHIYIYR 475 (626)
T ss_pred -----------ceEEEEecccceeEEEEecC--------------------CceEEEEEcCCCCEEEEe-cCCCeEEEEE
Confidence 35778887764432221110 124567899999977554 5567778999
Q ss_pred EECCCCcEEEecCCCC-CceeeEEeecCCEEEE
Q 004141 418 VNVSSGELLRITPAES-NFSWSLLTLDGDNIIA 449 (771)
Q Consensus 418 ~d~~tg~~~~l~~~~~-~~~~~~~s~dg~~l~~ 449 (771)
++.++.+..++-.-.+ .+....||+|++.+.-
T Consensus 476 Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred ECCCCcEEEEeeeecCceeEEeeecCCCceEEe
Confidence 9987767666644332 3344578888886653
No 330
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.49 E-value=0.003 Score=69.60 Aligned_cols=199 Identities=17% Similarity=0.153 Sum_probs=106.7
Q ss_pred ccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CcceEEEecCCcccccccCCCcccceeecC-CCCeEEEEecC
Q 004141 97 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEE 173 (771)
Q Consensus 97 ~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~wSp-Dg~~la~~~~~ 173 (771)
..+.+...+||.++ +|+-.+.+. ...+|.- .+..+++....-+ .+++|.| |.++++-.+
T Consensus 368 Ht~DILDlSWSKn~-fLLSSSMDK-----TVRLWh~~~~~CL~~F~HndfV----------TcVaFnPvDDryFiSGS-- 429 (712)
T KOG0283|consen 368 HTADILDLSWSKNN-FLLSSSMDK-----TVRLWHPGRKECLKVFSHNDFV----------TCVAFNPVDDRYFISGS-- 429 (712)
T ss_pred cchhheecccccCC-eeEeccccc-----cEEeecCCCcceeeEEecCCee----------EEEEecccCCCcEeecc--
Confidence 33457788888876 343444333 4566622 2223344333333 6999999 566555432
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
-+.-+.+|++...++..- ..-...+..+.++|||+.
T Consensus 430 ------------------------------------------LD~KvRiWsI~d~~Vv~W--~Dl~~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 430 ------------------------------------------LDGKVRLWSISDKKVVDW--NDLRDLITAVCYSPDGKG 465 (712)
T ss_pred ------------------------------------------cccceEEeecCcCeeEee--hhhhhhheeEEeccCCce
Confidence 234567777776666555 344456889999999996
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC----CccccceeecCCC-
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES----ISSAFFPRFSPDG- 328 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~----~~~~~~p~~SpDG- 328 (771)
.+..+ ++..+.+|... +. +. .......++.. ...+....|.|--
T Consensus 466 ----avIGt-------------~~G~C~fY~t~--~l-------k~-----~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 466 ----AVIGT-------------FNGYCRFYDTE--GL-------KL-----VSDFHIRLHNKKKKQGKRITGLQFFPGDP 514 (712)
T ss_pred ----EEEEE-------------eccEEEEEEcc--CC-------eE-----EEeeeEeeccCccccCceeeeeEecCCCC
Confidence 55544 33333444321 00 00 00011111110 1135556665422
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC-CCCCCccccCCCEEEEEe
Q 004141 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~-~~~~~~~s~Dg~~l~~~~ 407 (771)
..|+.++++ ++|.++|+......... .|.... +.....|+.||++|+..+
T Consensus 515 ~~vLVTSnD-----------SrIRI~d~~~~~lv~Kf------------------KG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 515 DEVLVTSND-----------SRIRIYDGRDKDLVHKF------------------KGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred CeEEEecCC-----------CceEEEeccchhhhhhh------------------cccccCCcceeeeEccCCCEEEEee
Confidence 256666665 46899987554443222 221111 234667999999998776
Q ss_pred eeCCeeEEEEE
Q 004141 408 IWGSSQVIISV 418 (771)
Q Consensus 408 ~~~~~~~l~~~ 418 (771)
.+....||.+
T Consensus 566 -eDs~VYiW~~ 575 (712)
T KOG0283|consen 566 -EDSWVYIWKN 575 (712)
T ss_pred -cCceEEEEeC
Confidence 4555556654
No 331
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0018 Score=65.59 Aligned_cols=209 Identities=12% Similarity=0.100 Sum_probs=110.5
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
+.+.++|+.|..+-.= +.++|..+..-++.+..++.++.++.+.-.. . -.+...-+.+...
T Consensus 132 ~~~a~v~~~l~~~g~~-------------k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t--~----l~e~~~~~eV~DL 192 (398)
T KOG0771|consen 132 ETAANVYQKLVDFGQQ-------------KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT--I----LEEIAHHAEVKDL 192 (398)
T ss_pred hhhhhHhHHHhhcCcc-------------eEEEEcCCCCEeeeccccceEEEEecCcchh--h----hhhHhhcCccccc
Confidence 3566677666543322 2333333333344445556777765422211 0 1112222457789
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCC---CeEEEEecCCCCCCCCc
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDE---TLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg---~~la~~~~~~~~~~~~~ 181 (771)
.|||||+.|+++... ...+|.+.++-...+.++... |.-|....|+-|+ ...++....+...
T Consensus 193 ~FS~dgk~lasig~d---~~~VW~~~~g~~~a~~t~~~k--------~~~~~~cRF~~d~~~~~l~laa~~~~~~~---- 257 (398)
T KOG0771|consen 193 DFSPDGKFLASIGAD---SARVWSVNTGAALARKTPFSK--------DEMFSSCRFSVDNAQETLRLAASQFPGGG---- 257 (398)
T ss_pred eeCCCCcEEEEecCC---ceEEEEeccCchhhhcCCccc--------chhhhhceecccCCCceEEEEEecCCCCc----
Confidence 999999999998653 233443333323333333222 2235678899887 3233322221110
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-CCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004141 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
.....+.+|+-. -...++. +.....+..+.-|+||+. ++.
T Consensus 258 ---------------------------------v~~~~~~~w~~~~~l~~~~~--~~~~~siSsl~VS~dGkf----~Al 298 (398)
T KOG0771|consen 258 ---------------------------------VRLCDISLWSGSNFLRLRKK--IKRFKSISSLAVSDDGKF----LAL 298 (398)
T ss_pred ---------------------------------eeEEEeeeeccccccchhhh--hhccCcceeEEEcCCCcE----EEE
Confidence 011334444322 1122223 444557889999999997 887
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC--CCCccccceeecCCCCEEEEEecCC
Q 004141 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+.+ ..+-+++. ..-+..++. .+...+....||||.++++-++.+.
T Consensus 299 GT~d---------------GsVai~~~-----------------~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 299 GTMD---------------GSVAIYDA-----------------KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred eccC---------------CcEEEEEe-----------------ceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 7642 24555554 233333332 2445789999999999998777654
No 332
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.47 E-value=0.0013 Score=71.73 Aligned_cols=131 Identities=16% Similarity=0.158 Sum_probs=78.6
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH----------------HHHHHHHCCcEEEEECCC-CCCCC
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK----------------SLAFLSSVGYSLLIVNYR-GSLGF 580 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~----------------~~~~la~~G~~Vv~~d~r-G~~~~ 580 (771)
+..+..|++...+ .....|+|++++|||+.+....... ....+. +-..++.+|.+ | .|+
T Consensus 60 ~~~lFyw~~~s~~--~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~-~~~~~l~iDqP~G-~G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRN--GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWN-NEAYVIYVDQPAG-VGF 135 (462)
T ss_pred CceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccc-cccCeEEEeCCCC-cCc
Confidence 4568888888764 3456899999999998653211000 000111 22577788865 5 233
Q ss_pred ChhhhhcCCCCccccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHhhC----------CCceeEEEecCC
Q 004141 581 GEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQA----------PDKFVAAAARNP 649 (771)
Q Consensus 581 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~----------p~~~~~~v~~~p 649 (771)
+...... .........+|+..+++.+.++ +.....++.|+|+||||..+..++.+- .-.++++++.+|
T Consensus 136 S~~~~~~-~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 136 SYADKAD-YDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred ccCCCCC-CCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 3321111 0111122367777777765544 334568899999999999888776541 113688988888
Q ss_pred ccch
Q 004141 650 LCNL 653 (771)
Q Consensus 650 ~~~~ 653 (771)
.++.
T Consensus 215 ~~dp 218 (462)
T PTZ00472 215 LTDP 218 (462)
T ss_pred ccCh
Confidence 7754
No 333
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.002 Score=60.89 Aligned_cols=252 Identities=11% Similarity=0.046 Sum_probs=134.0
Q ss_pred eEEEeCCC-CCeEEEEecC-C--CCCCeEEEEe-cCCcceEEEe---cCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 102 SAVVPSPS-GSKLLVVRNP-E--NESPIQFELW-SQSQLEKEFH---VPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 102 ~~~~~SPd-G~~la~~~~~-~--~~~~~~~~~~-~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
....|||= ..+||..... - .+...++++. ++....++.. ..... -.++||+.-..+++++..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~L----------fdV~Wse~~e~~~~~a~G 81 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGL----------FDVAWSENHENQVIAASG 81 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccce----------eEeeecCCCcceEEEEec
Confidence 46788882 2234443322 1 1455677776 3333233222 12222 388999988888877643
Q ss_pred CCCCCCCccCCCC-CCCCCCccCCCCCCcccccCCcCccc-CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCC
Q 004141 174 PSPSKPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLN 251 (771)
Q Consensus 174 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg 251 (771)
... ...|+.... ......+.++.-.....|.+-+++.+ +..-+..|-+|+...++-...- ......+-++.|||--
T Consensus 82 DGS-Lrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 82 DGS-LRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHI 159 (311)
T ss_pred Cce-EEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCC
Confidence 321 112331111 11222333333333333444333332 2233567777877655433221 3455678899999976
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEE
Q 004141 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
.. ++-... .++.+-++|+. ..|+...+..+...+....||.-...+
T Consensus 160 ~n----lfas~S--------------gd~~l~lwdvr----------------~~gk~~~i~ah~~Eil~cdw~ky~~~v 205 (311)
T KOG0277|consen 160 PN----LFASAS--------------GDGTLRLWDVR----------------SPGKFMSIEAHNSEILCCDWSKYNHNV 205 (311)
T ss_pred CC----eEEEcc--------------CCceEEEEEec----------------CCCceeEEEeccceeEeecccccCCcE
Confidence 65 544331 22344444442 335554466666678888999877777
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~ 411 (771)
++++..+ .-|+.||+..=.. .+ ..+. + +...+..+.|||-...|+.+.+.+.
T Consensus 206 l~Tg~vd----------~~vr~wDir~~r~-pl-------~eL~-----g-----h~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 206 LATGGVD----------NLVRGWDIRNLRT-PL-------FELN-----G-----HGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred EEecCCC----------ceEEEEehhhccc-cc-------eeec-----C-----CceEEEEEecCcchhhHhhhccccc
Confidence 7776543 3577888754221 11 0000 0 0012457789999998999998888
Q ss_pred eeEEEEEECCCCcEEE
Q 004141 412 SQVIISVNVSSGELLR 427 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~ 427 (771)
..+||......+.++.
T Consensus 258 T~riw~~~~~ds~~e~ 273 (311)
T KOG0277|consen 258 TVRIWDPERQDSAIET 273 (311)
T ss_pred eEEecccccchhhhhh
Confidence 8888865543443333
No 334
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.44 E-value=0.0061 Score=61.34 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=88.6
Q ss_pred CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCC
Q 004141 238 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI 316 (771)
Q Consensus 238 ~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~ 316 (771)
....++.+.|.|-... +++++- .+..|.++++ .+|+ ...|. +.
T Consensus 130 H~rrVg~V~wHPtA~N----VLlsag--------------~Dn~v~iWnv-----------------~tgeali~l~-hp 173 (472)
T KOG0303|consen 130 HQRRVGLVQWHPTAPN----VLLSAG--------------SDNTVSIWNV-----------------GTGEALITLD-HP 173 (472)
T ss_pred cceeEEEEeecccchh----hHhhcc--------------CCceEEEEec-----------------cCCceeeecC-CC
Confidence 3446888999999887 777651 2237888887 6665 45555 77
Q ss_pred ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcc
Q 004141 317 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~ 396 (771)
..+.+..|+-||+.|+....+. .|.++|..+++.... +. ...+ .......|
T Consensus 174 d~i~S~sfn~dGs~l~TtckDK-----------kvRv~dpr~~~~v~e--~~---------~heG-------~k~~Raif 224 (472)
T KOG0303|consen 174 DMVYSMSFNRDGSLLCTTCKDK-----------KVRVIDPRRGTVVSE--GV---------AHEG-------AKPARAIF 224 (472)
T ss_pred CeEEEEEeccCCceeeeecccc-----------eeEEEcCCCCcEeee--cc---------cccC-------CCcceeEE
Confidence 7899999999999998777654 588999877664211 10 0001 12345668
Q ss_pred ccCCCEEEEEee--eCCeeEEEEEECCC----CcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004141 397 LSDGCTMLLSSI--WGSSQVIISVNVSS----GELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 397 s~Dg~~l~~~~~--~~~~~~l~~~d~~t----g~~~~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
..+|+ | +++. ..+..++-.+|.+. +-.+.|..+.+ +-.+.+++|.+.||.+.
T Consensus 225 l~~g~-i-~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG-vl~PFyD~dt~ivYl~G 282 (472)
T KOG0303|consen 225 LASGK-I-FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG-VLLPFYDPDTSIVYLCG 282 (472)
T ss_pred eccCc-e-eeeccccccccceeccCcccccCcceeEEeccCCc-eEEeeecCCCCEEEEEe
Confidence 88988 4 4443 22333444445432 12333333333 44566777777666554
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.44 E-value=0.011 Score=64.89 Aligned_cols=40 Identities=8% Similarity=-0.125 Sum_probs=25.1
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
...+-++|.++-++..- +.-........++|||++ +++++
T Consensus 214 ~~~vSvID~etmeV~~q--V~Vdgnpd~v~~spdGk~----afvTs 253 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQ--VMVDGNLDNVDTDYDGKY----AFSTC 253 (635)
T ss_pred eEEEEEEECccceEEEE--EEeCCCcccceECCCCCE----EEEec
Confidence 46777888887655332 122224566789999996 65554
No 336
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.41 E-value=0.0043 Score=65.91 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=73.1
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 320 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 320 (771)
.+.++.|.|=... ++.++ ..+..|-++|+. +....-+|..+.+.+.
T Consensus 679 KI~slRfHPLAad----vLa~a--------------syd~Ti~lWDl~----------------~~~~~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 679 KITSLRFHPLAAD----VLAVA--------------SYDSTIELWDLA----------------NAKLYSRLVGHTDQIF 724 (1012)
T ss_pred eEEEEEecchhhh----Hhhhh--------------hccceeeeeehh----------------hhhhhheeccCcCcee
Confidence 4667778775544 43333 133467777871 3445677888888999
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004141 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg 400 (771)
+.+|||||+.|+.+-.+. .|++++...++. .+.++...+ ...-..+.|.=||
T Consensus 725 ~~AWSpdGr~~AtVcKDg-----------~~rVy~Prs~e~-pv~Eg~gpv----------------gtRgARi~wacdg 776 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDG-----------TLRVYEPRSREQ-PVYEGKGPV----------------GTRGARILWACDG 776 (1012)
T ss_pred EEEECCCCcceeeeecCc-----------eEEEeCCCCCCC-ccccCCCCc----------------cCcceeEEEEecC
Confidence 999999999999887653 488887665443 222222110 0112356798899
Q ss_pred CEEEEEeeeC-CeeEEEEEECCC
Q 004141 401 CTMLLSSIWG-SSQVIISVNVSS 422 (771)
Q Consensus 401 ~~l~~~~~~~-~~~~l~~~d~~t 422 (771)
+.|+++.-.. +..+|-++|..+
T Consensus 777 r~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 777 RIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred cEEEEecccccchhhhhhhhhhh
Confidence 9887765433 233344445433
No 337
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.41 E-value=0.00025 Score=47.69 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=24.2
Q ss_pred ceeecCCccccccceEEEeCCCCCeEEEEecCCC-CCCeEE
Q 004141 88 TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-ESPIQF 127 (771)
Q Consensus 88 ~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-~~~~~~ 127 (771)
|+|..+ +.+..|+|||||++|+|++++.+ +..+||
T Consensus 3 ~~t~~~-----~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSP-----GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SS-----SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCC-----ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455554 56889999999999999998762 444444
No 338
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.31 E-value=0.0014 Score=65.33 Aligned_cols=143 Identities=18% Similarity=0.188 Sum_probs=91.4
Q ss_pred ceEEEEEccCCceeec-cCC-CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 218 PSLFVININSGEVQAV-KGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l-~~~-~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+||++|+..=++..- ..+ +...+...++.++.+-+ |+|-+. ...++|+++|+.
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y----lAyp~s-------------~t~GdV~l~d~~------- 161 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY----LAYPGS-------------TTSGDVVLFDTI------- 161 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCce----EEecCC-------------CCCceEEEEEcc-------
Confidence 4699999987654332 112 22223444444445556 888752 234588898872
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
+-.....+..+.+.....+|||||+.||..+... .-|.++....|+... +
T Consensus 162 ---------nl~~v~~I~aH~~~lAalafs~~G~llATASeKG----------TVIRVf~v~~G~kl~--e--------- 211 (391)
T KOG2110|consen 162 ---------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKG----------TVIRVFSVPEGQKLY--E--------- 211 (391)
T ss_pred ---------cceeeeEEEecCCceeEEEECCCCCEEEEeccCc----------eEEEEEEcCCccEee--e---------
Confidence 2233445557788889999999999999988764 346677766655311 0
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
=..|.++.++.+++|+||+..|..+ +.....++|.++..
T Consensus 212 ------FRRG~~~~~IySL~Fs~ds~~L~~s-S~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 212 ------FRRGTYPVSIYSLSFSPDSQFLAAS-SNTETVHIFKLEKV 250 (391)
T ss_pred ------eeCCceeeEEEEEEECCCCCeEEEe-cCCCeEEEEEeccc
Confidence 0123455567899999999966544 45677889988753
No 339
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.0049 Score=63.04 Aligned_cols=78 Identities=17% Similarity=0.095 Sum_probs=45.4
Q ss_pred ccceeecCCCCEEEEEecC---CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 319 AFFPRFSPDGKFLVFLSAK---SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~---~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
....+..|||+ |+|.... ... ........||++|..++..+.+.... .....++
T Consensus 113 ~ND~~v~pdG~-~wfgt~~~~~~~~--~~~~~~G~lyr~~p~g~~~~l~~~~~--------------------~~~NGla 169 (307)
T COG3386 113 PNDGVVDPDGR-IWFGDMGYFDLGK--SEERPTGSLYRVDPDGGVVRLLDDDL--------------------TIPNGLA 169 (307)
T ss_pred CCceeEcCCCC-EEEeCCCccccCc--cccCCcceEEEEcCCCCEEEeecCcE--------------------EecCceE
Confidence 34568899998 6777766 110 11112237999986433332221111 0236889
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 396 WLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
||||++++|++-+.. ..|++++.+
T Consensus 170 ~SpDg~tly~aDT~~--~~i~r~~~d 193 (307)
T COG3386 170 FSPDGKTLYVADTPA--NRIHRYDLD 193 (307)
T ss_pred ECCCCCEEEEEeCCC--CeEEEEecC
Confidence 999999888876544 356666554
No 340
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.0097 Score=63.11 Aligned_cols=261 Identities=15% Similarity=0.135 Sum_probs=136.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEE-ecCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV-AEEPSP 176 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~-~~~~~~ 176 (771)
.+..++..|.|.+||--++. + .+.+| .+|...+.+.+...+ .+++|+|.+..=+.+ +....
T Consensus 402 ~Vr~iSvdp~G~wlasGsdD--G---tvriWEi~TgRcvr~~~~d~~I----------~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDD--G---TVRIWEIATGRCVRTVQFDSEI----------RSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eEEEEEecCCcceeeecCCC--C---cEEEEEeecceEEEEEeeccee----------EEEEecCCCCceeEEEEecCc-
Confidence 46778899999999865443 3 45555 456666666665554 699999998763332 22211
Q ss_pred CCCCccCCCC------CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc------CCceeeccCCCCCCccce
Q 004141 177 SKPTFSLGST------KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ------SGEVQAVKGIPKSLSVGQ 244 (771)
Q Consensus 177 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~------~~~~~~l~~~~~~~~~~~ 244 (771)
........+ .+...+.... . . .....++..|.-. .+ +... +.....+.+
T Consensus 466 -~~ivnp~~G~~~e~~~t~ell~~~~--~---~----------~~p~~~~~~W~~~~~~e~~~~-v~~~--I~~~k~i~~ 526 (733)
T KOG0650|consen 466 -VLIVNPIFGDRLEVGPTKELLASAP--N---E----------SEPDAAVVTWSRASLDELEKG-VCIV--IKHPKSIRQ 526 (733)
T ss_pred -eEEeCccccchhhhcchhhhhhcCC--C---c----------cCCcccceeechhhhhhhccc-eEEE--EecCCccce
Confidence 000111111 0000000000 0 0 0011234444322 22 2222 344456889
Q ss_pred EEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceee
Q 004141 245 VVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRF 324 (771)
Q Consensus 245 ~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~ 324 (771)
+.|.-+|.+ |+.+.-.. .+..+++.+|+ .......+....+.+....|
T Consensus 527 vtWHrkGDY----latV~~~~------------~~~~VliHQLS----------------K~~sQ~PF~kskG~vq~v~F 574 (733)
T KOG0650|consen 527 VTWHRKGDY----LATVMPDS------------GNKSVLIHQLS----------------KRKSQSPFRKSKGLVQRVKF 574 (733)
T ss_pred eeeecCCce----EEEeccCC------------CcceEEEEecc----------------cccccCchhhcCCceeEEEe
Confidence 999999999 99887332 23378888873 22222344455667888999
Q ss_pred cCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC-CCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004141 325 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 325 SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l 403 (771)
.|---+|+..+.+ .+.+||+..+... .+.++. ..+..++.+|.|.-|
T Consensus 575 HPs~p~lfVaTq~------------~vRiYdL~kqelvKkL~tg~--------------------kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 575 HPSKPYLFVATQR------------SVRIYDLSKQELVKKLLTGS--------------------KWISSMSIHPNGDNL 622 (733)
T ss_pred cCCCceEEEEecc------------ceEEEehhHHHHHHHHhcCC--------------------eeeeeeeecCCCCeE
Confidence 9988777655543 3888888764431 111111 135577788988888
Q ss_pred EEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004141 404 LLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~ 462 (771)
++.+. +...--|-+|+.+.-.+.+......+ ...+-.+++=+|+..+.+..-.++.
T Consensus 623 i~gs~-d~k~~WfDldlsskPyk~lr~H~~av--r~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 623 ILGSY-DKKMCWFDLDLSSKPYKTLRLHEKAV--RSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred EEecC-CCeeEEEEcccCcchhHHhhhhhhhh--hhhhhccccceeeeecCCCcEEEEe
Confidence 76653 33333333455444444443322211 2223344444554444444443443
No 341
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.091 Score=48.91 Aligned_cols=130 Identities=16% Similarity=0.188 Sum_probs=69.6
Q ss_pred CCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004141 278 RPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 278 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
.++.||+-|- ..| ....++.+.+.+.. -+|-.|-.++-.+.+ ..|..||+
T Consensus 161 gdc~iy~tdc-----------------~~g~~~~a~sghtghila-lyswn~~m~~sgsqd-----------ktirfwdl 211 (350)
T KOG0641|consen 161 GDCKIYITDC-----------------GRGQGFHALSGHTGHILA-LYSWNGAMFASGSQD-----------KTIRFWDL 211 (350)
T ss_pred CcceEEEeec-----------------CCCCcceeecCCcccEEE-EEEecCcEEEccCCC-----------ceEEEEee
Confidence 4568999987 333 35566666665443 223345544433333 34777776
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc-EEEecCCCCCc
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNF 435 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~~~~~~ 435 (771)
.-....+ ++.. +..-.|+-...+..++.-|.|+ |+.+...++.--|| |+.+|. +++.-+...++
T Consensus 212 rv~~~v~----------~l~~--~~~~~glessavaav~vdpsgr-ll~sg~~dssc~ly--dirg~r~iq~f~phsadi 276 (350)
T KOG0641|consen 212 RVNSCVN----------TLDN--DFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLY--DIRGGRMIQRFHPHSADI 276 (350)
T ss_pred eccceee----------eccC--cccCCCcccceeEEEEECCCcc-eeeeccCCCceEEE--EeeCCceeeeeCCCccce
Confidence 5433211 1110 0011112222345667778887 55665555555666 555665 44555555566
Q ss_pred eeeEEeecCCEEEEEE
Q 004141 436 SWSLLTLDGDNIIAVS 451 (771)
Q Consensus 436 ~~~~~s~dg~~l~~~~ 451 (771)
....|||...+++..+
T Consensus 277 r~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCS 292 (350)
T ss_pred eEEEeCCCceEEEEec
Confidence 6778888777666544
No 342
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.27 E-value=0.046 Score=64.91 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=49.3
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|.||+-+ |+..... -+-+.-...++|-|.|.. |+.+....+ + ..|..+.-
T Consensus 236 ~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPsG~l----IA~~q~~~~-~-----------~~VvFfEr--------- 288 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPSGNL----IASSQRLPD-R-----------HDVVFFER--------- 288 (928)
T ss_pred eeEEEEECCC-ceEEecc-ccCCCccCCccCCCCCCE----EEEEEEcCC-C-----------cEEEEEec---------
Confidence 4678888876 4544442 122334567899999997 777653111 1 13333332
Q ss_pred hhhhcCCCCCCcc--eec--CCCCccccceeecCCCCEEEEEec
Q 004141 297 LELKESSSEDLPV--VNL--TESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 297 ~~~~~~~~~~~~~--~~l--t~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
+|-+. -.| ......+....||+|+..||..-.
T Consensus 289 --------NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 289 --------NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred --------CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 22111 112 233445788999999999988663
No 343
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.27 E-value=0.0094 Score=60.76 Aligned_cols=190 Identities=12% Similarity=0.120 Sum_probs=112.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecC---CcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP---QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.+......|.|++++..++++ .|.+.+-.....++.+. .++ .+.+..|.||| |+|.......
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~-----~w~Fsd~~~g~~lt~vs~~~s~v--------~~ts~~fHpDg--Lifgtgt~d~ 369 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDG-----TWAFSDISSGSQLTVVSDETSDV--------EYTSAAFHPDG--LIFGTGTPDG 369 (506)
T ss_pred cceeeeeccCCcEEEEecCCc-----eEEEEEccCCcEEEEEeeccccc--------eeEEeeEcCCc--eEEeccCCCc
Confidence 367778899999998877655 55555322223333321 222 23588999999 4454433332
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
....|+........++..+......+.|++++=...+...+..+.+||+..-+ .+.+. .+....+..+.|-+.|+.
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~-l~~~~~v~s~~fD~SGt~-- 446 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ-LDEKKEVNSLSFDQSGTY-- 446 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee-ccccccceeEEEcCCCCe--
Confidence 23356544444445555566666677788874344444455669999986544 22222 344446778889888987
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+..+ ..-+||.++- ++- .-.+...+....+....++|..+.++++-.+
T Consensus 447 --L~~~g---------------~~l~Vy~~~k-----~~k---------~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 447 --LGIAG---------------SDLQVYICKK-----KTK---------SWTEIKELADHSGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred --EEeec---------------ceeEEEEEec-----ccc---------cceeeehhhhcccccceeeecccceEEeecc
Confidence 77654 1226777763 000 1123444555555667788888888777666
Q ss_pred cCC
Q 004141 336 AKS 338 (771)
Q Consensus 336 ~~~ 338 (771)
++.
T Consensus 496 md~ 498 (506)
T KOG0289|consen 496 MDA 498 (506)
T ss_pred chh
Confidence 553
No 344
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.26 E-value=0.013 Score=63.23 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=103.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..++.-+.||||++||+..-. ...+|.+...+ ..+++.+....... -.-..+.|+-|+.++++++.
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~~---~~~iy~L~~~~-~vk~~~v~~~~~~~----~~a~~i~ftid~~k~~~~s~------ 448 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTVS---RTKIYRLQPDP-NVKVINVDDVPLAL----LDASAISFTIDKNKLFLVSK------ 448 (691)
T ss_pred cceeeeccCCCCCEEEEeecc---ceEEEEeccCc-ceeEEEeccchhhh----ccceeeEEEecCceEEEEec------
Confidence 457778899999999996532 23477776322 23333321111000 00147889999999999862
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC---CCCCCccceEEEecCCCCCc
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG---IPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~---~~~~~~~~~~~wspDg~~~~ 255 (771)
...+|.++++++...+.+.+ .+....+..++-||||++
T Consensus 449 -------------------------------------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~y-- 489 (691)
T KOG2048|consen 449 -------------------------------------NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNY-- 489 (691)
T ss_pred -------------------------------------ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCE--
Confidence 22567777777766555521 222346778899999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCC-CEEEE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDG-KFLVF 333 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG-~~l~f 333 (771)
|+..+ ..+.|+++++ ++.+.+.|. .-...++...++|.- +.|+.
T Consensus 490 --iaa~~---------------t~g~I~v~nl-----------------~~~~~~~l~~rln~~vTa~~~~~~~~~~lvv 535 (691)
T KOG2048|consen 490 --IAAIS---------------TRGQIFVYNL-----------------ETLESHLLKVRLNIDVTAAAFSPFVRNRLVV 535 (691)
T ss_pred --EEEEe---------------ccceEEEEEc-----------------ccceeecchhccCcceeeeeccccccCcEEE
Confidence 99876 3348999998 777776665 333456777888544 45554
Q ss_pred EecCCCCCCCCccccccceeeecCCCC
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
... .+|++-+|++..+
T Consensus 536 ats-----------~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 536 ATS-----------NNQVFEFDIEARN 551 (691)
T ss_pred Eec-----------CCeEEEEecchhh
Confidence 443 3579999985444
No 345
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.25 E-value=0.013 Score=66.63 Aligned_cols=98 Identities=12% Similarity=0.019 Sum_probs=57.8
Q ss_pred eEEEEEeechhhcccceeEEEEEEeecCCCCccce-eecCCccccccceEEEeCCCCCeEEE-EecCC-CCCCeEEEEec
Q 004141 55 QAMFSISQPNLLANKRKKFMLSTVISKENENSVTF-QWAPFPVEMTGASAVVPSPSGSKLLV-VRNPE-NESPIQFELWS 131 (771)
Q Consensus 55 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~~~~~~~~~SPdG~~la~-~~~~~-~~~~~~~~~~~ 131 (771)
+|+|..+.+ +.|.+.|. ++.+++.+ +... ..+..|.|||||++||| ++-.. .++..+|+...
T Consensus 320 kiAfv~~~~--------~~L~~~D~--dG~n~~~ve~~~~-----~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L 384 (912)
T TIGR02171 320 KLAFRNDVT--------GNLAYIDY--TKGASRAVEIEDT-----ISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNL 384 (912)
T ss_pred eEEEEEcCC--------CeEEEEec--CCCCceEEEecCC-----CceecCcCCCCCCEEEEEEeecCCCCCceEEEEeh
Confidence 677775421 27777665 44455555 4343 45788999999999999 54332 15677888772
Q ss_pred --CC-cceEEEecCCcccccccCCCcccceeecCCCC-eEEEEecCCCCC
Q 004141 132 --QS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEEPSPS 177 (771)
Q Consensus 132 --~~-~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~~~~~~ 177 (771)
.+ .+.++ ++.... +......+.|. .|+|++....++
T Consensus 385 ~t~~~~~vkl-~ve~aa---------iprwrv~e~gdt~ivyv~~a~nn~ 424 (912)
T TIGR02171 385 NASGSGLVKL-PVENAA---------IPRWRVLENGDTVIVYVSDASNNK 424 (912)
T ss_pred hccCCCceEe-eccccc---------ccceEecCCCCeEEEEEcCCCCCc
Confidence 22 22222 332221 13555667554 588888766554
No 346
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.25 E-value=0.036 Score=56.97 Aligned_cols=151 Identities=16% Similarity=0.130 Sum_probs=95.4
Q ss_pred ceEEEEEccC--CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 218 PSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..|.+||+.+ .++.... -.....+..++|+|=+.. |+.++. -+..|.++|+-
T Consensus 250 ~~L~iwD~R~~~~~~~~~~-~ah~~~vn~~~fnp~~~~----ilAT~S--------------~D~tV~LwDlR------- 303 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSV-KAHSAEVNCVAFNPFNEF----ILATGS--------------ADKTVALWDLR------- 303 (422)
T ss_pred CeEEEEEcCCCCCCCcccc-cccCCceeEEEeCCCCCc----eEEecc--------------CCCcEEEeech-------
Confidence 6899999884 3333331 223456788999998887 766652 23368888872
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee--EEe
Q 004141 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD--VIP 373 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~ 373 (771)
+ -......+..+...+..+.|||.-..+.-.+..+ .+|.+||+..-+..+......+ ..-
T Consensus 304 n--------L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D----------~rl~vWDls~ig~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 304 N--------LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD----------RRLNVWDLSRIGEEQSPEDAEDGPPEL 365 (422)
T ss_pred h--------cccCceeccCCCcceEEEEeCCCCCceeEecccC----------CcEEEEeccccccccChhhhccCCcce
Confidence 1 1224555666777899999999998876666443 4688999865443332111100 000
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
++.. |-+...+..+.|.|+.-.++.+.+.++..+||.+.
T Consensus 366 lF~H-------gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 366 LFIH-------GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eEEe-------cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0000 01223467889999999999999988888888764
No 347
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.24 E-value=0.075 Score=51.97 Aligned_cols=110 Identities=22% Similarity=0.280 Sum_probs=69.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.++..+|||.-..++..+.- ++.-.+|++...|....-. ..... ++....+||.||.+++..+
T Consensus 29 sIS~l~FSP~~~~~~~A~SW-D~tVR~wevq~~g~~~~ka--~~~~~------~PvL~v~WsddgskVf~g~-------- 91 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSW-DGTVRIWEVQNSGQLVPKA--QQSHD------GPVLDVCWSDDGSKVFSGG-------- 91 (347)
T ss_pred chheeEeccccCceEEeccc-CCceEEEEEecCCcccchh--hhccC------CCeEEEEEccCCceEEeec--------
Confidence 47889999955555433333 3666778777544332211 11111 2236899999998766543
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
.+.++-+||+.++++..+ -..+..+....|-+-..+ +.|+
T Consensus 92 ------------------------------------~Dk~~k~wDL~S~Q~~~v--~~Hd~pvkt~~wv~~~~~--~cl~ 131 (347)
T KOG0647|consen 92 ------------------------------------CDKQAKLWDLASGQVSQV--AAHDAPVKTCHWVPGMNY--QCLV 131 (347)
T ss_pred ------------------------------------cCCceEEEEccCCCeeee--eecccceeEEEEecCCCc--ceeE
Confidence 235778999999999998 566777888888776552 2256
Q ss_pred EEeecCc
Q 004141 260 FVGWSSE 266 (771)
Q Consensus 260 ~~~~~~~ 266 (771)
..+|+..
T Consensus 132 TGSWDKT 138 (347)
T KOG0647|consen 132 TGSWDKT 138 (347)
T ss_pred ecccccc
Confidence 6666443
No 348
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.24 E-value=0.041 Score=53.62 Aligned_cols=56 Identities=21% Similarity=0.455 Sum_probs=36.2
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC---cceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 103 AVVPSPSGSKLLVVRNPENESPIQFELW-SQS---QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
..+.+.||+.||.+.+. .+++. ... ....-.+++.+.+- ....++||||+..|||+
T Consensus 2 ~~~~~~~Gk~lAi~qd~------~iEiRsa~Ddf~si~~kcqVpkD~~P------QWRkl~WSpD~tlLa~a 61 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQ------CIEIRSAKDDFSSIIGKCQVPKDPNP------QWRKLAWSPDCTLLAYA 61 (282)
T ss_pred ceeecCCCcEEEEEecc------EEEEEeccCCchheeEEEecCCCCCc------hheEEEECCCCcEEEEE
Confidence 35779999999998654 45555 221 22233345444421 22588999999999996
No 349
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.24 E-value=0.058 Score=58.50 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=72.6
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 320 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 320 (771)
.+..++.||+|+- |+ ++.+... -....|++++.. .-.+...|..+.-.+.
T Consensus 527 Ev~~l~~s~~gnl----iA-SaCKS~~---------~ehAvI~lw~t~----------------~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 527 EVYALAISPTGNL----IA-SACKSSL---------KEHAVIRLWNTA----------------NWLQVQELEGHSLTVT 576 (764)
T ss_pred eEEEEEecCCCCE----Ee-ehhhhCC---------ccceEEEEEecc----------------chhhhheecccceEEE
Confidence 4557788888884 44 4422221 123467777751 2233456777888899
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004141 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg 400 (771)
..+|||||++|+-.+.+. ...||.. ..+..-... + .+-..+..-+-...|+||+
T Consensus 577 ~l~FSpdg~~LLsvsRDR---------t~sl~~~--~~~~~~e~~---------f------a~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDR---------TVSLYEV--QEDIKDEFR---------F------ACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred EEEECCCCcEEEEeecCc---------eEEeeee--ecccchhhh---------h------ccccccceEEEEcccCccc
Confidence 999999999999998876 2345543 111110000 0 0000011123356899999
Q ss_pred CEEEEEeeeCCeeEEEEEEC
Q 004141 401 CTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~ 420 (771)
++ +++++++....+|...-
T Consensus 631 ~~-FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 631 KY-FATASRDKKVKVWEEPD 649 (764)
T ss_pred ce-eEEecCCceEEEEeccC
Confidence 97 67777788888888753
No 350
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.21 E-value=0.0013 Score=65.24 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=63.6
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHH-HHHHHHcCCCCCCe
Q 004141 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPSK 617 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~r 617 (771)
.|+++|+++++ ...|..+++.+....+.|+.++++|... . ......++++.+. ++.+.+.. ...+
T Consensus 2 ~lf~~p~~gG~--~~~y~~la~~l~~~~~~v~~i~~~~~~~---~-------~~~~~si~~la~~y~~~I~~~~--~~gp 67 (229)
T PF00975_consen 2 PLFCFPPAGGS--ASSYRPLARALPDDVIGVYGIEYPGRGD---D-------EPPPDSIEELASRYAEAIRARQ--PEGP 67 (229)
T ss_dssp EEEEESSTTCS--GGGGHHHHHHHTTTEEEEEEECSTTSCT---T-------SHEESSHHHHHHHHHHHHHHHT--SSSS
T ss_pred eEEEEcCCccC--HHHHHHHHHhCCCCeEEEEEEecCCCCC---C-------CCCCCCHHHHHHHHHHHhhhhC--CCCC
Confidence 58899997765 4578888888865569999999998431 0 1112234444433 33444432 2238
Q ss_pred EEEEEcChhHHHHHHHHhhC---CCceeEEEecCC
Q 004141 618 VTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNP 649 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~p 649 (771)
+.|+|||+||.+|..+|.+- ...+..++++.+
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 99999999999999988642 334667776663
No 351
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.18 E-value=0.069 Score=52.49 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=90.2
Q ss_pred cccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCC--eEEEE
Q 004141 39 SIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS--KLLVV 116 (771)
Q Consensus 39 ~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~--~la~~ 116 (771)
.+..-..|+++ -|..=+.+.+.+-++.+..+-.|.++|+..... + +.+-...+.+....|+|+-. .|+-.
T Consensus 32 ~l~~lF~~~aH--~~sitavAVs~~~~aSGssDetI~IYDm~k~~q----l--g~ll~HagsitaL~F~~~~S~shLlS~ 103 (362)
T KOG0294|consen 32 TLKPLFAFSAH--AGSITALAVSGPYVASGSSDETIHIYDMRKRKQ----L--GILLSHAGSITALKFYPPLSKSHLLSG 103 (362)
T ss_pred eeecccccccc--ccceeEEEecceeEeccCCCCcEEEEeccchhh----h--cceeccccceEEEEecCCcchhheeee
Confidence 33333445544 444445556667777777778889988754321 1 11122236688888888876 56554
Q ss_pred ecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCC
Q 004141 117 RNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 196 (771)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (771)
++++ .+.+|+.+.-..+-.+ ....+.| ..++..|-||.-+-+.
T Consensus 104 sdDG-----~i~iw~~~~W~~~~sl-K~H~~~V------t~lsiHPS~KLALsVg------------------------- 146 (362)
T KOG0294|consen 104 SDDG-----HIIIWRVGSWELLKSL-KAHKGQV------TDLSIHPSGKLALSVG------------------------- 146 (362)
T ss_pred cCCC-----cEEEEEcCCeEEeeee-ccccccc------ceeEecCCCceEEEEc-------------------------
Confidence 4433 5667754444222222 1122223 6899999997444432
Q ss_pred CCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 197 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 197 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
++..|..||+-.|+.-.+ .+-.-....+.|+|.|.+ .+.+.
T Consensus 147 -------------------~D~~lr~WNLV~Gr~a~v--~~L~~~at~v~w~~~Gd~----F~v~~ 187 (362)
T KOG0294|consen 147 -------------------GDQVLRTWNLVRGRVAFV--LNLKNKATLVSWSPQGDH----FVVSG 187 (362)
T ss_pred -------------------CCceeeeehhhcCcccee--eccCCcceeeEEcCCCCE----EEEEe
Confidence 236788899887775554 233334455899999998 66665
No 352
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=97.18 E-value=0.013 Score=56.58 Aligned_cols=192 Identities=15% Similarity=0.141 Sum_probs=103.7
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhH
Q 004141 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 600 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~ 600 (771)
.|+..|+ ++. .||.+-||.+....+ .|+...+.|+++||.|++.-|.-.-.|.. ........+
T Consensus 8 ~wvl~P~-----~P~-gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~---------~A~~~~~~f 72 (250)
T PF07082_consen 8 SWVLIPP-----RPK-GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQA---------IAREVWERF 72 (250)
T ss_pred cEEEeCC-----CCC-EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHH---------HHHHHHHHH
Confidence 3666665 233 455555766544333 67788999999999999999975322211 111123455
Q ss_pred HHHHHHHHHcCCCCCC--eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCcc
Q 004141 601 LTAIDHVIDMGLANPS--KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 678 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~~--ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (771)
..+++.+..+...+.. +++-+|||+|+-+-+.+...++..-++-++++= -+.. ....++- .+.+.... .
T Consensus 73 ~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSF-NN~~---a~~aIP~---~~~l~~~l--~ 143 (250)
T PF07082_consen 73 ERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISF-NNFP---ADEAIPL---LEQLAPAL--R 143 (250)
T ss_pred HHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEec-CChH---HHhhCch---Hhhhcccc--c
Confidence 5666666665443332 688899999999988877665433343333221 1100 0001111 11111111 1
Q ss_pred CCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC-EEEEEeCCCCcc
Q 004141 679 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE-TKVIVFPNDVHG 748 (771)
Q Consensus 679 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~-~~~~~~~~~~H~ 748 (771)
..-.|.++....+.+.+- .-...|+|-=.+|.+ .++..+.+.|+.+... ++....+| .|-
T Consensus 144 ~EF~PsP~ET~~li~~~Y------~~~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 144 LEFTPSPEETRRLIRESY------QVRRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred cCccCCHHHHHHHHHHhc------CCccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 122233343333322211 123467777777766 5778888888876333 56666764 784
No 353
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.03 Score=53.34 Aligned_cols=129 Identities=14% Similarity=0.163 Sum_probs=65.1
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH-CC--cEEEEECCCCCCCCChhhhhcCCCC-cc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VG--YSLLIVNYRGSLGFGEEALQSLPGK-VG 593 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G--~~Vv~~d~rG~~~~g~~~~~~~~~~-~~ 593 (771)
|.+.+-..+.|--.......+.|+++.|.|+.. ..|...+..|.. .+ +.+..+..-|......+-++..... ..
T Consensus 10 gl~~si~~~~~~v~~~~~~~~li~~IpGNPG~~--gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~e 87 (301)
T KOG3975|consen 10 GLPTSILTLKPWVTKSGEDKPLIVWIPGNPGLL--GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEE 87 (301)
T ss_pred CCcccceeeeeeeccCCCCceEEEEecCCCCch--hHHHHHHHHHHHhcccccceeEEeccccccCCccccccccccccc
Confidence 333443344443223456789999999988763 245455554432 22 3355555444222211111111111 00
Q ss_pred ccch-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC--ceeEEEecCC
Q 004141 594 SQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 649 (771)
Q Consensus 594 ~~~~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~p 649 (771)
.... +.+..-++++.+.- ....++.++|||-|+++++.+....-. .+..+++.-|
T Consensus 88 ifsL~~QV~HKlaFik~~~-Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFP 145 (301)
T KOG3975|consen 88 IFSLQDQVDHKLAFIKEYV-PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFP 145 (301)
T ss_pred ccchhhHHHHHHHHHHHhC-CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecc
Confidence 1112 23334455554432 345789999999999999988763222 2344455445
No 354
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.14 E-value=0.00019 Score=74.49 Aligned_cols=92 Identities=15% Similarity=0.260 Sum_probs=56.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||||++||.++.++ .+.|- +..+ +..+-.... +.+.+++||||||+|+...++...
T Consensus 291 g~in~f~FS~DG~~LA~VSqDG-----fLRvF~fdt~e---Llg~mkSYF------GGLLCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDG-----FLRIFDFDTQE---LLGVMKSYF------GGLLCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred ccccceeEcCCCceEEEEecCc-----eEEEeeccHHH---HHHHHHhhc------cceEEEEEcCCccEEEecCCcceE
Confidence 4578899999999999998765 44443 2211 111111111 122599999999999998877643
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
. +|......-...-..+++|...+.|++
T Consensus 357 t--VwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 357 T--VWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred E--EEEeccceEEEeccccccceeeEeecc
Confidence 2 333222222233445778887777764
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.12 Score=55.36 Aligned_cols=210 Identities=14% Similarity=0.140 Sum_probs=124.3
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
......+++|.+++ +.+.. ...+..++ ..........+.... ..+.++||+++++......
T Consensus 76 p~~i~v~~~~~~vy-v~~~~--~~~v~vid~~~~~~~~~~~vG~~P----------~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 76 PAGVAVNPAGNKVY-VTTGD--SNTVSVIDTATNTVLGSIPVGLGP----------VGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred ccceeeCCCCCeEE-EecCC--CCeEEEEcCcccceeeEeeeccCC----------ceEEECCCCCEEEEEeccc-----
Confidence 45678899999874 44432 33455665 222223333333333 4899999999886652210
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
....+.++|..++++... .+........+++|||+. ++
T Consensus 138 ------------------------------------~~~~vsvid~~t~~~~~~--~~vG~~P~~~a~~p~g~~----vy 175 (381)
T COG3391 138 ------------------------------------GNNTVSVIDAATNKVTAT--IPVGNTPTGVAVDPDGNK----VY 175 (381)
T ss_pred ------------------------------------CCceEEEEeCCCCeEEEE--EecCCCcceEEECCCCCe----EE
Confidence 247889999988887665 333334478899999996 55
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee-----cCCCCccccceeecCCCCEEEEE
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-----LTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
... . ....|..+|. ++....+ .-..........++|||++++ +
T Consensus 176 v~~-~-------------~~~~v~vi~~-----------------~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~y-V 223 (381)
T COG3391 176 VTN-S-------------DDNTVSVIDT-----------------SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVY-V 223 (381)
T ss_pred EEe-c-------------CCCeEEEEeC-----------------CCcceeccccccccccCCCCceEEECCCCCEEE-E
Confidence 443 2 2236888886 4444443 111223356789999999764 4
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 414 (771)
.... +....+.++|..++........ ..+ . .......+|+|+.++..... ...
T Consensus 224 ~~~~-------~~~~~v~~id~~~~~v~~~~~~---------~~~-~--------~~~~v~~~p~g~~~yv~~~~--~~~ 276 (381)
T COG3391 224 ANDG-------SGSNNVLKIDTATGNVTATDLP---------VGS-G--------APRGVAVDPAGKAAYVANSQ--GGT 276 (381)
T ss_pred Eecc-------CCCceEEEEeCCCceEEEeccc---------ccc-C--------CCCceeECCCCCEEEEEecC--CCe
Confidence 4432 1134688888776554221000 000 0 12355788999988776544 456
Q ss_pred EEEEECCCCcEEEec
Q 004141 415 IISVNVSSGELLRIT 429 (771)
Q Consensus 415 l~~~d~~tg~~~~l~ 429 (771)
+..+|..+..+....
T Consensus 277 V~vid~~~~~v~~~~ 291 (381)
T COG3391 277 VSVIDGATDRVVKTG 291 (381)
T ss_pred EEEEeCCCCceeeee
Confidence 788888776666543
No 356
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.10 E-value=0.019 Score=56.03 Aligned_cols=208 Identities=13% Similarity=0.153 Sum_probs=120.6
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc--cceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS--VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
+.++-..|.|.....-|..+.+.+.+.++|......+. .-++ +...+...+|.|.|.+|+...+.. ...+
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q------d~~~vrsiSfHPsGefllvgTdHp--~~rl 242 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ------DTEPVRSISFHPSGEFLLVGTDHP--TLRL 242 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh------ccceeeeEeecCCCceEEEecCCC--ceeE
Confidence 34566788888888888888888899988875442211 1111 224588999999999998754432 2233
Q ss_pred EEEecCCcceEEEec-CCc-ccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004141 127 FELWSQSQLEKEFHV-PQT-VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 127 ~~~~~~~~~~~~~~~-~~~-~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
|.+. ...-.+.. +.+ ..+.| .++..|+.|+ |+..+.
T Consensus 243 Ydv~---T~QcfvsanPd~qht~ai------~~V~Ys~t~~-lYvTaS-------------------------------- 280 (430)
T KOG0640|consen 243 YDVN---TYQCFVSANPDDQHTGAI------TQVRYSSTGS-LYVTAS-------------------------------- 280 (430)
T ss_pred Eecc---ceeEeeecCcccccccce------eEEEecCCcc-EEEEec--------------------------------
Confidence 3333 11111111 222 22223 5788999887 333221
Q ss_pred cCCcCcccCCccCceEEEEEccCCceee-ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004141 205 EEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
++..|-+||--+++... +....+...+.++.|+.+||+ |+-.+ .++-++
T Consensus 281 -----------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky----iLsSG---------------~DS~vk 330 (430)
T KOG0640|consen 281 -----------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY----ILSSG---------------KDSTVK 330 (430)
T ss_pred -----------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE----EeecC---------------Ccceee
Confidence 34678888866655433 322234457889999999998 87665 233455
Q ss_pred EEecccccchhhhhhhhcCCCCCCccee-cCCC-----CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004141 284 AVRVSLYKSEASELELKESSSEDLPVVN-LTES-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-lt~~-----~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
++.+ .++.... -|.. ........|.....++.|.... ...|..||..
T Consensus 331 LWEi-----------------~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa----------s~slcsWdaR 383 (430)
T KOG0640|consen 331 LWEI-----------------STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA----------SNSLCSWDAR 383 (430)
T ss_pred eeee-----------------cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc----------cCceeecccc
Confidence 5555 3343322 2211 1123456777777777665544 2457888877
Q ss_pred CCCCCC
Q 004141 358 TNGNFS 363 (771)
Q Consensus 358 ~~~~~~ 363 (771)
++....
T Consensus 384 tadr~~ 389 (430)
T KOG0640|consen 384 TADRVA 389 (430)
T ss_pred chhhhh
Confidence 655433
No 357
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.10 E-value=0.047 Score=55.24 Aligned_cols=216 Identities=10% Similarity=0.054 Sum_probs=117.0
Q ss_pred cCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEE
Q 004141 36 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLV 115 (771)
Q Consensus 36 ~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~ 115 (771)
.|+.-..+|=...-.-+.+.||+.+.... .+-..++.+...|.-..+. ..+....+.+....|+|-....+
T Consensus 27 dIrVs~~tWDS~fcavNPkfiAvi~easg------Ggaf~ViPl~k~Gr~d~~~--P~v~GHt~~vLDi~w~PfnD~vI- 97 (472)
T KOG0303|consen 27 DIRVSRVTWDSSFCAVNPKFVAVIIEASG------GGAFLVIPLVKTGRMDASY--PLVCGHTAPVLDIDWCPFNDCVI- 97 (472)
T ss_pred ceeeeeeeccccccccCCceEEEEEecCC------CcceeecccccccccCCCC--CCccCccccccccccCccCCcee-
Confidence 33333333333333346778888775432 2233444443332111111 11223446688899999777653
Q ss_pred EecCCCCCCeEEEEecCCcceEEE----ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004141 116 VRNPENESPIQFELWSQSQLEKEF----HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
.+..++...-+|.+.+++-.+.++ .+. +....| +-+.|.|--.-++..+
T Consensus 98 ASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrV------g~V~wHPtA~NVLlsa-------------------- 150 (472)
T KOG0303|consen 98 ASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRV------GLVQWHPTAPNVLLSA-------------------- 150 (472)
T ss_pred ecCCCCceEEEEECCCcccccCcccceEEEe-ecceeE------EEEeecccchhhHhhc--------------------
Confidence 233332334455555554333322 111 111111 5677888655554432
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004141 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
...+.+.+||+.+|+...- +.....+.+..|+-||.. |+.++
T Consensus 151 -----------------------g~Dn~v~iWnv~tgeali~--l~hpd~i~S~sfn~dGs~----l~Ttc--------- 192 (472)
T KOG0303|consen 151 -----------------------GSDNTVSIWNVGTGEALIT--LDHPDMVYSMSFNRDGSL----LCTTC--------- 192 (472)
T ss_pred -----------------------cCCceEEEEeccCCceeee--cCCCCeEEEEEeccCCce----eeeec---------
Confidence 2458999999999985444 345557889999999998 77765
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCc-cccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004141 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~-~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
++..|.++|. ..++...-- .+.+ ......|-.+|+ |+.+.-.. .+..
T Consensus 193 ------kDKkvRv~dp-----------------r~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr-------~seR 241 (472)
T KOG0303|consen 193 ------KDKKVRVIDP-----------------RRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSR-------MSER 241 (472)
T ss_pred ------ccceeEEEcC-----------------CCCcEeeecccccCCCcceeEEeccCc-eeeecccc-------cccc
Confidence 3347888886 445433221 2333 255678888888 44433322 2345
Q ss_pred cceeeec
Q 004141 350 SLHRIDW 356 (771)
Q Consensus 350 ~l~~~d~ 356 (771)
++-+||.
T Consensus 242 q~aLwdp 248 (472)
T KOG0303|consen 242 QIALWDP 248 (472)
T ss_pred ceeccCc
Confidence 6667764
No 358
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.09 E-value=0.053 Score=52.60 Aligned_cols=241 Identities=13% Similarity=0.172 Sum_probs=136.4
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEE-EecCCCC-----
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLV-VRNPENE----- 122 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~-~~~~~~~----- 122 (771)
...|...|.|......|. ...++.+..++.+++.. ....|--..+.+...+-||-.++|+- +.++.++
T Consensus 20 qtad~d~icFlvgTnslK---~dNqVhll~~d~e~s~l---~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~ 93 (370)
T KOG1007|consen 20 QTADRDHICFLVGTNSLK---EDNQVHLLRLDSEGSEL---LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLT 93 (370)
T ss_pred cccCccceEEEEeccccC---CcceeEEEEecCccchh---hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCccee
Confidence 345777788877655543 33577776675555422 22233333467888888997766544 3333222
Q ss_pred CCeEEEEe-cCCc-----ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCC-CCCCc--
Q 004141 123 SPIQFELW-SQSQ-----LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG-GSSDK-- 193 (771)
Q Consensus 123 ~~~~~~~~-~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~-~~~~~-- 193 (771)
...+|.+. .-+. ...+..++...+|++ .++.|-|++.+|+...+... ..|.....++ .....
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i------~cvew~Pns~klasm~dn~i---~l~~l~ess~~vaev~ss 164 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKI------NCVEWEPNSDKLASMDDNNI---VLWSLDESSKIVAEVLSS 164 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCce------eeEEEcCCCCeeEEeccCce---EEEEcccCcchheeeccc
Confidence 23466666 2222 122223444455555 79999999999998764321 1233222222 11000
Q ss_pred ---cCCCCCCcccccC-CcCcccCCccCceEEEEEccCCceee-ccCCCCCCccceEEEecCCCCCccEEEEEeecCcce
Q 004141 194 ---DCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR 268 (771)
Q Consensus 194 ---~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~ 268 (771)
..........|+| .-|.++.......|.-||+.+-+... +. -...-.+..+.|.|+-+. ++.+.-
T Consensus 165 ~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~----~lvt~g----- 234 (370)
T KOG1007|consen 165 ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQH----ILVTCG----- 234 (370)
T ss_pred ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh-hhhcceeeeccCCCCceE----EEEEcC-----
Confidence 0111112455777 44666666777899999987654322 21 112224667889998766 666542
Q ss_pred eeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 269 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 269 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
..+.|.++|.-. ....++.|.++..-+..++|.|--.+|+.....+
T Consensus 235 ---------DdgyvriWD~R~---------------tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 235 ---------DDGYVRIWDTRK---------------TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred ---------CCccEEEEeccC---------------CCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 223566666510 2234566777777789999999888888776554
No 359
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.08 E-value=0.028 Score=60.83 Aligned_cols=119 Identities=20% Similarity=0.270 Sum_probs=77.7
Q ss_pred cccCCC-cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004141 148 SVYADG-WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 148 ~~~~~~-~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
++|+.+ .+.+++.||+|+.||....... +....|++|+..
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~---------------------------------------~ehAvI~lw~t~ 560 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSL---------------------------------------KEHAVIRLWNTA 560 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCC---------------------------------------ccceEEEEEecc
Confidence 346655 5568889999998877543321 134789999977
Q ss_pred CCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004141 227 SGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 227 ~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
+-.. ..| ......+.+.+|||||++ |+-++. +|.-.||...-+ ...
T Consensus 561 ~W~~~~~L--~~HsLTVT~l~FSpdg~~----LLsvsR-------------DRt~sl~~~~~~--------------~~~ 607 (764)
T KOG1063|consen 561 NWLQVQEL--EGHSLTVTRLAFSPDGRY----LLSVSR-------------DRTVSLYEVQED--------------IKD 607 (764)
T ss_pred chhhhhee--cccceEEEEEEECCCCcE----EEEeec-------------CceEEeeeeecc--------------cch
Confidence 6443 345 456678999999999999 998872 233355554210 000
Q ss_pred CCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 306 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 306 ~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.-....+..+..-+....|+||+++++..|++.
T Consensus 608 e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 608 EFRFACLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred hhhhccccccceEEEEcccCcccceeEEecCCc
Confidence 111223445566688999999999987777664
No 360
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.07 E-value=0.0024 Score=64.10 Aligned_cols=118 Identities=19% Similarity=0.339 Sum_probs=80.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC---C------cEEEEECCCCCCCCChhhhhc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---G------YSLLIVNYRGSLGFGEEALQS 587 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~---G------~~Vv~~d~rG~~~~g~~~~~~ 587 (771)
.|+.+|-.-..|+..+..++.-.++++||.|++ ...|...+..|... | |.|++|..+| ||-+..
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGs--v~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPG---ygwSd~-- 204 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGS--VREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPG---YGWSDA-- 204 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEEecCCCch--HHHHHhhhhhhcCccccCCccceeEEEeccCCCC---cccCcC--
Confidence 588898887777654444444458889999887 33555666666433 3 8899999999 554321
Q ss_pred CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEE
Q 004141 588 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA 645 (771)
Q Consensus 588 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v 645 (771)
+.+.|-. ...+...++-|.-+ +.-++..|-|.-+|..++..++..+|+.+.+.-
T Consensus 205 -~sk~GFn-~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlH 258 (469)
T KOG2565|consen 205 -PSKTGFN-AAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLH 258 (469)
T ss_pred -CccCCcc-HHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhh
Confidence 2222222 34444555544444 345789999999999999999999999876643
No 361
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=97.06 E-value=0.0032 Score=62.04 Aligned_cols=112 Identities=9% Similarity=0.164 Sum_probs=63.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCc--EEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~--~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
....++||+||..... .......++.....|| .++.+.++..+.. ..+. ............+...++.|.+.
T Consensus 16 ~~~~vlvfVHGyn~~f-~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~--~d~~~a~~s~~~l~~~L~~L~~~-- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSF-EDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYF--YDRESARFSGPALARFLRDLARA-- 89 (233)
T ss_pred CCCeEEEEEeCCCCCH-HHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhh--hhhhhHHHHHHHHHHHHHHHHhc--
Confidence 4568999999954321 1122233344444444 7888888863321 1110 01111112234555555555555
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhC----C-----CceeEEEecCCccc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQA----P-----DKFVAAAARNPLCN 652 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~----p-----~~~~~~v~~~p~~~ 652 (771)
....+|.|++||||+.+.+.++... + ..+..+++.+|-++
T Consensus 90 ~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 90 PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 2468999999999999999876541 1 24566777766554
No 362
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.078 Score=50.27 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=37.5
Q ss_pred CCCCCccccCC---CEEEEEeeeCCeeEEEEEECCCCcEE--EecCCCCCceeeEEeecCCEEEEEE
Q 004141 390 SILSNPWLSDG---CTMLLSSIWGSSQVIISVNVSSGELL--RITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 390 ~~~~~~~s~Dg---~~l~~~~~~~~~~~l~~~d~~tg~~~--~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
-++.++|.|.- +.-+.+.++++..-||..+.+.++.+ .|..-........||..|+.|....
T Consensus 209 wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 209 WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence 35677888753 34456667788888998885444322 2222222344568899988665543
No 363
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.0035 Score=71.49 Aligned_cols=288 Identities=16% Similarity=0.174 Sum_probs=145.1
Q ss_pred cceEEEeCCCCCeEEEEecC---------CCCCCeEEEEe-cCCc--ceEEEecCCcccccccCCCcccceeecCCCCe-
Q 004141 100 GASAVVPSPSGSKLLVVRNP---------ENESPIQFELW-SQSQ--LEKEFHVPQTVHGSVYADGWFEGISWNSDETL- 166 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~---------~~~~~~~~~~~-~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~- 166 (771)
.....+|||++..+.-+... .+.+-.+|.++ .+.. .+.+ +.+-.+..|..+.|++-|..
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~--------~s~~s~~rF~kL~W~~~g~~~ 79 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPV--------GSLQSSNRFNKLAWGSYGSHS 79 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccc--------ccccccccceeeeecccCCCc
Confidence 34568999999522211110 01334566666 2222 1222 22223345679999998888
Q ss_pred ---EEEEecCCCCCCCCccCCCC-CC-----CCCCccCCCCCCcccccCCcC-cccCCccCceEEEEEccCCceeeccCC
Q 004141 167 ---IAYVAEEPSPSKPTFSLGST-KG-----GSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKGI 236 (771)
Q Consensus 167 ---la~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~~~~~~l~~~ 236 (771)
||=..+++... .|+.... +. ......+........|.+..+ ....+..+.+|++||+..-+ +.. +
T Consensus 80 ~GlIaGG~edG~I~--ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~--~ 154 (1049)
T KOG0307|consen 80 HGLIAGGLEDGNIV--LYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE-TPF--T 154 (1049)
T ss_pred cceeeccccCCceE--EecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC-CCC--C
Confidence 55443443221 2221110 00 112223333444466777776 45566778999999997632 222 1
Q ss_pred C----CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec
Q 004141 237 P----KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL 312 (771)
Q Consensus 237 ~----~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (771)
+ ....+..++|.-.-.. |.-.+. -.....++|+. .......+
T Consensus 155 ~~~~~~~~eI~~lsWNrkvqh----ILAS~s--------------~sg~~~iWDlr----------------~~~pii~l 200 (1049)
T KOG0307|consen 155 PGSQAPPSEIKCLSWNRKVSH----ILASGS--------------PSGRAVIWDLR----------------KKKPIIKL 200 (1049)
T ss_pred CCCCCCcccceEeccchhhhH----HhhccC--------------CCCCceecccc----------------CCCccccc
Confidence 2 1123445566554444 333321 11244555551 33445666
Q ss_pred CCCCc--cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCC
Q 004141 313 TESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 313 t~~~~--~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
+...+ .+....|.||+.+-+.+..++. ....|-+||+.--.. ..++.. .+..+
T Consensus 201 s~~~~~~~~S~l~WhP~~aTql~~As~dd-------~~PviqlWDlR~ass---------P~k~~~---------~H~~G 255 (1049)
T KOG0307|consen 201 SDTPGRMHCSVLAWHPDHATQLLVASGDD-------SAPVIQLWDLRFASS---------PLKILE---------GHQRG 255 (1049)
T ss_pred ccCCCccceeeeeeCCCCceeeeeecCCC-------CCceeEeecccccCC---------chhhhc---------ccccc
Confidence 65544 3778999999966555554442 123466666533211 001110 12235
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE-ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004141 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 391 ~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~ 462 (771)
+-.+.|++.+.++++++..++ +++.+|.+||++.- +...........|++..-.+ +..++....-.||-
T Consensus 256 ilslsWc~~D~~lllSsgkD~--~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~-~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDN--RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSV-MAAASFDGKISIYS 325 (1049)
T ss_pred eeeeccCCCCchhhhcccCCC--CeeEecCCCceEeeecCCCCcceeeeeecCCCcch-hhhheeccceeeee
Confidence 668899998877888776554 56667888888663 33222223334555543322 22333444444443
No 364
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.02 E-value=0.46 Score=52.33 Aligned_cols=262 Identities=11% Similarity=0.102 Sum_probs=134.7
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe-EE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI-QF 127 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~-~~ 127 (771)
+|+|.+.+||+.+... .....|...++.++.--+..++ +.....+|.+||+.+.|++..+...++ +|
T Consensus 136 ~s~D~~~la~s~D~~G----~e~y~lr~kdL~tg~~~~d~i~--------~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~ 203 (682)
T COG1770 136 ISPDHNLLAYSVDVLG----DEQYTLRFKDLATGEELPDEIT--------NTSGSFAWAADGKTLFYTRLDENHRPDKVW 203 (682)
T ss_pred eCCCCceEEEEEeccc----ccEEEEEEEecccccccchhhc--------ccccceEEecCCCeEEEEEEcCCCCcceEE
Confidence 5789999999987543 4456677777754432222221 125578999999999999887654443 33
Q ss_pred EEecCC--cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 128 ELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 128 ~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
.-.-++ ...+++....+. ..+-.+.=|-.+++|+......
T Consensus 204 ~h~~gt~~~~d~lvyeE~d~-------~f~~~v~~s~s~~yi~i~~~~~------------------------------- 245 (682)
T COG1770 204 RHRLGTPGSSDELVYEEKDD-------RFFLSVGRSRSEAYIVISLGSH------------------------------- 245 (682)
T ss_pred EEecCCCCCcceEEEEcCCC-------cEEEEeeeccCCceEEEEcCCC-------------------------------
Confidence 222222 223333221111 1223445556666666543221
Q ss_pred CCcCcccCCccCceEEEEEccC--CceeeccCCCCCCccceEEEec--CCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004141 206 EDWGETYAGKRQPSLFVININS--GEVQAVKGIPKSLSVGQVVWAP--LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wsp--Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
....+++++.+. ++++.+ .+... ...++. -|.. .+..+|..+ .+..
T Consensus 246 ----------~tsE~~ll~a~~p~~~p~vv--~pr~~---g~eY~~eh~~d~----f~i~sN~~g-----------knf~ 295 (682)
T COG1770 246 ----------ITSEVRLLDADDPEAEPKVV--LPREN---GVEYSVEHGGDR----FYILSNADG-----------KNFK 295 (682)
T ss_pred ----------cceeEEEEecCCCCCceEEE--EEcCC---CcEEeeeecCcE----EEEEecCCC-----------cceE
Confidence 235677777654 344555 23221 112222 2444 566665443 1224
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 282 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
|+...+.. ....-+.+..+.....--.++-=.++|+..-++. +..+|++++.++++.
T Consensus 296 l~~ap~~~---------------~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~--------glp~v~v~~~~~~~~ 352 (682)
T COG1770 296 LVRAPVSA---------------DKSNWRELIPHREDVRLEGVDLFADHLVLLERQE--------GLPRVVVRDRKTGEE 352 (682)
T ss_pred EEEccCCC---------------ChhcCeeeeccCCCceeeeeeeeccEEEEEeccc--------CCceEEEEecCCCce
Confidence 55544300 1111222333333333334555567788777664 246788999887776
Q ss_pred CCCccceeeEEecccccCCCCCcccccCCC-CCCccccCCCEEEEEeee-CCeeEEEEEECCCCcEEEecCC
Q 004141 362 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSI-LSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITPA 431 (771)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~-~~~~~s~Dg~~l~~~~~~-~~~~~l~~~d~~tg~~~~l~~~ 431 (771)
..+.-.. .. |...+ .+.-| |...|-+..+. .-..+++.+|+.+++.+.|...
T Consensus 353 ~~i~f~~------------~a----y~~~l~~~~e~--~s~~lR~~ysS~ttP~~~~~~dm~t~er~~Lkqq 406 (682)
T COG1770 353 RGIAFDD------------EA----YSAGLSGNPEF--DSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQ 406 (682)
T ss_pred eeEEecc------------hh----hhccccCCCCC--CCccEEEEeecccccceeEEeeccCCcEEEEEec
Confidence 4432211 00 11111 12222 34445554443 3345799999999999888643
No 365
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.99 E-value=0.076 Score=64.41 Aligned_cols=91 Identities=9% Similarity=-0.008 Sum_probs=49.3
Q ss_pred cceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc-ccCCCCCcccccCCCCCCcccc
Q 004141 320 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ-CAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
...+++|++..|+..... ..+|+++|..++....+..... ...... ......| ..+..++++|
T Consensus 686 ~gVa~dp~~g~LyVad~~----------~~~I~v~d~~~g~v~~~~G~G~-~~~~~g~~~~~~~~-----~~P~GIavsp 749 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG----------QHQIWEYNISDGVTRVFSGDGY-ERNLNGSSGTSTSF-----AQPSGISLSP 749 (1057)
T ss_pred eEEEEecCCCeEEEEECC----------CCeEEEEECCCCeEEEEecCCc-cccCCCCccccccc-----cCccEEEEeC
Confidence 457899977766554432 3568999876654321111000 000000 0000011 1345678999
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004141 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 399 Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
||+.||++... ...|..+|++++..+.+
T Consensus 750 dG~~LYVADs~--n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 750 DLKELYIADSE--SSSIRALDLKTGGSRLL 777 (1057)
T ss_pred CCCEEEEEECC--CCeEEEEECCCCcEEEE
Confidence 99988776543 34688889888776543
No 366
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0049 Score=70.32 Aligned_cols=253 Identities=12% Similarity=0.157 Sum_probs=136.0
Q ss_pred cceEEEeCCCCCeE--EEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCC-eEEEEecCC
Q 004141 100 GASAVVPSPSGSKL--LVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEEP 174 (771)
Q Consensus 100 ~~~~~~~SPdG~~l--a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~~~ 174 (771)
.-...+|++.|..- +.+...++|.-.+|.... .+....++..-...+|.| .++.|+|... .||-.++++
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V------~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPV------LGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCce------eeeeccccCCceeeccCCCC
Confidence 45668999999882 112222223333333331 122222222223445555 7899999877 666665554
Q ss_pred CCCCCCccCCCCCCCCCCcc--CCCCCCcccccCCcCccc-CCccCceEEEEEccCCce-eeccCCCCCCccceEEEecC
Q 004141 175 SPSKPTFSLGSTKGGSSDKD--CNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPL 250 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspD 250 (771)
..- .|+....+....... ...-+.-+.|...--..+ .+.......+||+...+. ..+..+........++|.||
T Consensus 140 eI~--iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 140 EIL--IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred cEE--EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 332 343222111111100 001111222322211112 233445788999987643 33322223334668899999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCE
Q 004141 251 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 251 g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~ 330 (771)
+.. -+.++.+++ +..-|-.+|+-. .+...+.++.+...+.+..|++.+..
T Consensus 218 ~aT----ql~~As~dd-----------~~PviqlWDlR~---------------assP~k~~~~H~~GilslsWc~~D~~ 267 (1049)
T KOG0307|consen 218 HAT----QLLVASGDD-----------SAPVIQLWDLRF---------------ASSPLKILEGHQRGILSLSWCPQDPR 267 (1049)
T ss_pred Cce----eeeeecCCC-----------CCceeEeecccc---------------cCCchhhhcccccceeeeccCCCCch
Confidence 976 444443222 222344555411 45566777888888999999999977
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
++..+..+ .+++.|+.++++.. .-+....+ ....+.|.|-.-.++..++.+
T Consensus 268 lllSsgkD----------~~ii~wN~~tgEvl----------~~~p~~~n---------W~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 268 LLLSSGKD----------NRIICWNPNTGEVL----------GELPAQGN---------WCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred hhhcccCC----------CCeeEecCCCceEe----------eecCCCCc---------ceeeeeecCCCcchhhhheec
Confidence 87777654 57999998887641 11111111 133567888776677777778
Q ss_pred CeeEEEEEE
Q 004141 411 SSQVIISVN 419 (771)
Q Consensus 411 ~~~~l~~~d 419 (771)
+...||.+-
T Consensus 319 gkI~I~sl~ 327 (1049)
T KOG0307|consen 319 GKISIYSLQ 327 (1049)
T ss_pred cceeeeeee
Confidence 888888764
No 367
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=96.97 E-value=0.0013 Score=68.28 Aligned_cols=126 Identities=23% Similarity=0.211 Sum_probs=79.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHH-HCCcEEEEECCCCCCCCChhh---hhcCCCCcccc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS-SVGYSLLIVNYRGSLGFGEEA---LQSLPGKVGSQ 595 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la-~~G~~Vv~~d~rG~~~~g~~~---~~~~~~~~~~~ 595 (771)
|..-++.|. . ...+.-++|+++||++-.+.....- ....|+ ....+|+.++||-. .+|-=+ ....+++.|
T Consensus 121 LYlNVW~P~-~-~p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG-~FGFL~l~~~~eaPGNmG-- 195 (601)
T KOG4389|consen 121 LYLNVWAPA-A-DPYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVG-AFGFLYLPGHPEAPGNMG-- 195 (601)
T ss_pred eEEEEeccC-C-CCCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeec-cceEEecCCCCCCCCccc--
Confidence 333456673 1 2223349999999887665554332 233444 45578899999932 233211 123345554
Q ss_pred chhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCccc
Q 004141 596 DVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 652 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~~ 652 (771)
.-|..-|++|+.++ ..-|+++|.|+|.|+|+.-+.+.+..- ..+|+.+|+.++..+
T Consensus 196 -l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 196 -LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred -hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 67888899999876 336999999999999998766544321 236788888777554
No 368
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.95 E-value=0.11 Score=52.15 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=62.5
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..+++++|+.+-+..... ..++..+..++|||||.. |+..+..+ .-|.++.++
T Consensus 152 ~GdV~l~d~~nl~~v~~I-~aH~~~lAalafs~~G~l----lATASeKG--------------TVIRVf~v~-------- 204 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTI-NAHKGPLAALAFSPDGTL----LATASEKG--------------TVIRVFSVP-------- 204 (391)
T ss_pred CceEEEEEcccceeeeEE-EecCCceeEEEECCCCCE----EEEeccCc--------------eEEEEEEcC--------
Confidence 368999998765544431 244556788899999998 88877322 234444542
Q ss_pred hhhhcCCCCCCcceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 297 LELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
++.....+..+ ...+.+.+||||++.|.-.++.+ .-+|+.++...
T Consensus 205 --------~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te---------TVHiFKL~~~~ 251 (391)
T KOG2110|consen 205 --------EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE---------TVHIFKLEKVS 251 (391)
T ss_pred --------CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC---------eEEEEEecccc
Confidence 33333333322 33578999999999988877664 35566665433
No 369
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.94 E-value=0.01 Score=65.44 Aligned_cols=90 Identities=20% Similarity=0.141 Sum_probs=60.2
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004141 279 PCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
...|.++|. .+... +.+-.+...+....||||||+|+..+.+. .|.+||+.
T Consensus 555 df~I~vvD~-----------------~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-----------tIr~wDlp 606 (910)
T KOG1539|consen 555 DFSIRVVDV-----------------VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-----------TIRTWDLP 606 (910)
T ss_pred ceeEEEEEc-----------------hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-----------cEEEEecc
Confidence 347889997 55554 44455667789999999999999999874 49999999
Q ss_pred CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 358 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
++... +-+... .-..++.+||+|..|+-+.... ..||.+
T Consensus 607 t~~lI----------D~~~vd----------~~~~sls~SPngD~LAT~Hvd~--~gIylW 645 (910)
T KOG1539|consen 607 TGTLI----------DGLLVD----------SPCTSLSFSPNGDFLATVHVDQ--NGIYLW 645 (910)
T ss_pred Cccee----------eeEecC----------CcceeeEECCCCCEEEEEEecC--ceEEEE
Confidence 87752 111100 0124678999999775544332 344444
No 370
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.93 E-value=0.11 Score=49.11 Aligned_cols=198 Identities=15% Similarity=0.107 Sum_probs=115.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+.+..|.-||++.+.- ++.....+| ..|...+....... ......-|-|..+++--..++..
T Consensus 18 gaV~avryN~dGnY~ltc-----GsdrtvrLWNp~rg~liktYsghG~---------EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTC-----GSDRTVRLWNPLRGALIKTYSGHGH---------EVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cceEEEEEccCCCEEEEc-----CCCceEEeecccccceeeeecCCCc---------eeeeccccccccccccCCCCceE
Confidence 568899999999998765 334477888 34444433322111 11355666677666554333211
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~ 255 (771)
.+|+...++-.+++..+....+.+.|.++-.-.+.+.-...+.+||-.+..+.++.-+.. ...+.++..+ +..
T Consensus 84 --~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he-- 157 (307)
T KOG0316|consen 84 --QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE-- 157 (307)
T ss_pred --EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE--
Confidence 245555555556666666666777788877666677778899999987765444420111 1234444333 232
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC--CccccceeecCCCCEEEE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f 333 (771)
|+-.+ -+..+..+|+ .-|. ++.+ ...+.+..||+||+-+.-
T Consensus 158 --IvaGS---------------~DGtvRtydi-----------------R~G~---l~sDy~g~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 158 --IVAGS---------------VDGTVRTYDI-----------------RKGT---LSSDYFGHPITSVSFSKDGNCSLA 200 (307)
T ss_pred --EEeec---------------cCCcEEEEEe-----------------ecce---eehhhcCCcceeEEecCCCCEEEE
Confidence 55443 2235566665 2222 2222 224788999999997765
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCC
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 364 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 364 (771)
.+.+ ..|.++|-.+|+..+.
T Consensus 201 ~~l~-----------stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 201 SSLD-----------STLRLLDKETGKLLKS 220 (307)
T ss_pred eecc-----------ceeeecccchhHHHHH
Confidence 5554 3588899888876443
No 371
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.93 E-value=0.27 Score=58.57 Aligned_cols=110 Identities=13% Similarity=0.087 Sum_probs=62.1
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.....+|=.||+++|..+-... .| ....|.+|+=+ |......+ ..+| -...++|-
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~--~~---~~R~iRVy~Re-G~L~stSE---------------~v~g----Le~~l~Wr 265 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPE--TG---SRRVIRVYSRE-GELQSTSE---------------PVDG----LEGALSWR 265 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcC--CC---ceeEEEEECCC-ceEEeccc---------------cCCC----ccCCccCC
Confidence 3456789999999988876431 01 14566777633 33221111 1111 13578999
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEec----CCCCCceeeEEeecCCEEEEEEe
Q 004141 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRIT----PAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 398 ~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~----~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
|.|..|+-+....+...+..+..++-+--..+ .....+....|+.|+..|++...
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 99996655554445555666665442222222 22234556788888888777664
No 372
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.92 E-value=0.05 Score=54.70 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=89.7
Q ss_pred CcccCCccCceEEEEEccCCceeec--cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004141 209 GETYAGKRQPSLFVININSGEVQAV--KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l--~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
|.++++.....|++|...+|....- +-+....++..+.|||..+. ++++.. -+..|.++|
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~----vfaScS--------------~DgsIrIWD 286 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG----VFASCS--------------CDGSIRIWD 286 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc----eEEeee--------------cCceEEEEE
Confidence 3444555667889998888764332 11335568889999999987 777652 122566666
Q ss_pred cccccchhhhhhhhcCCCCCC---cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004141 287 VSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
+ ..+ .+.....+...+.-..|+-+-..||+...+ ..|.+||+..=+..+
T Consensus 287 i-----------------Rs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd-----------Gt~~iwDLR~~~~~~ 338 (440)
T KOG0302|consen 287 I-----------------RSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD-----------GTLSIWDLRQFKSGQ 338 (440)
T ss_pred e-----------------cCCCccceeEeeccCCceeeEEccCCcceeeecCCC-----------ceEEEEEhhhccCCC
Confidence 6 222 122223445567778999887766655443 246777775432211
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
. +.. |. .+..-+.++.|+|....++..+..+....||-+.+
T Consensus 339 p------VA~---------fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 339 P------VAT---------FK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred c------cee---------EE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 0 110 10 01123568899998888888777777777775544
No 373
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.90 E-value=0.041 Score=54.16 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=22.2
Q ss_pred EEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 223 ININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 223 ~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
+.-.++.+-.+. .....++.++.|.+||.+ |+..+
T Consensus 235 y~~~~~~pl~ll-ggh~gGvThL~~~edGn~----lfsGa 269 (406)
T KOG2919|consen 235 YNDDGRRPLQLL-GGHGGGVTHLQWCEDGNK----LFSGA 269 (406)
T ss_pred EecCCCCceeee-cccCCCeeeEEeccCcCe----ecccc
Confidence 333344444442 244557889999999997 65544
No 374
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.90 E-value=0.047 Score=56.75 Aligned_cols=186 Identities=12% Similarity=0.119 Sum_probs=114.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+....|+|++.+++....++ + +..+|+ .+... .+++. +..+. ..+.+|+|-..+|++...
T Consensus 111 apv~~~~f~~~d~t~l~s~sDd-~---v~k~~d~s~a~v-~~~l~-~htDY------VR~g~~~~~~~hivvtGs----- 173 (487)
T KOG0310|consen 111 APVHVTKFSPQDNTMLVSGSDD-K---VVKYWDLSTAYV-QAELS-GHTDY------VRCGDISPANDHIVVTGS----- 173 (487)
T ss_pred CceeEEEecccCCeEEEecCCC-c---eEEEEEcCCcEE-EEEec-CCcce------eEeeccccCCCeEEEecC-----
Confidence 3467788999999886543332 3 445552 22222 33332 11122 279999999888888621
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.+..|.+||........++ ......+..+.+-|.|..
T Consensus 174 --------------------------------------YDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lpsgs~---- 210 (487)
T KOG0310|consen 174 --------------------------------------YDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPSGSL---- 210 (487)
T ss_pred --------------------------------------CCceEEEEEeccCCceeEE-ecCCCceeeEEEcCCCCE----
Confidence 3467888888766433332 456667888999999887
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ ...+-+||+- .+++. .....+...+.+.++..|++.|+-.+-
T Consensus 211 iasAg----------------Gn~vkVWDl~----------------~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL 258 (487)
T KOG0310|consen 211 IASAG----------------GNSVKVWDLT----------------TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL 258 (487)
T ss_pred EEEcC----------------CCeEEEEEec----------------CCceehhhhhcccceEEEEEeecCCceEeeccc
Confidence 66554 2267888871 34443 333347778999999999999987776
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~ 407 (771)
+. ++-++|..+-+ ++.-+ .|| ..+-+.+.|||+..+++--
T Consensus 259 D~-----------~VKVfd~t~~K----------vv~s~------~~~----~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 259 DR-----------HVKVFDTTNYK----------VVHSW------KYP----GPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred cc-----------ceEEEEccceE----------EEEee------ecc----cceeeEEecCCCceEEEec
Confidence 64 35556533211 11111 222 2455777889888877643
No 375
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.089 Score=49.90 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=82.3
Q ss_pred ceEEEEEccCCc-eeeccCCCCCCccceEEEecC---CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004141 218 PSLFVININSGE-VQAVKGIPKSLSVGQVVWAPL---NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspD---g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
-.|+.++-+++- ..++. .....++.++.|+|- |. ++-..--...+|+--.-|.| .-.||..+-
T Consensus 128 vsvl~~~~~g~w~t~ki~-~aH~~GvnsVswapa~~~g~-----~~~~~~~~~~krlvSgGcDn-~VkiW~~~~------ 194 (299)
T KOG1332|consen 128 VSVLTYDSSGGWTTSKIV-FAHEIGVNSVSWAPASAPGS-----LVDQGPAAKVKRLVSGGCDN-LVKIWKFDS------ 194 (299)
T ss_pred EEEEEEcCCCCccchhhh-hccccccceeeecCcCCCcc-----ccccCcccccceeeccCCcc-ceeeeecCC------
Confidence 455555555332 22231 456678899999996 52 21111111122322222433 224555542
Q ss_pred hhhhhhhcCCCCC-CcceecCCCCccccceeecCCC----CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004141 294 ASELELKESSSED-LPVVNLTESISSAFFPRFSPDG----KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 294 ~~~~~~~~~~~~~-~~~~~lt~~~~~~~~p~~SpDG----~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
.. .....|..+..-++.++|.|.- .+||-.+++. ..-||..+.+.+.-+..
T Consensus 195 -----------~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg---------~viIwt~~~e~e~wk~t---- 250 (299)
T KOG1332|consen 195 -----------DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG---------TVIIWTKDEEYEPWKKT---- 250 (299)
T ss_pred -----------cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC---------cEEEEEecCccCccccc----
Confidence 11 1234477777778888998864 4566666553 22344444222221100
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004141 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
+ -..|| .-+.+++||.-|..| ..+..++...||.=++ .|+.+++..
T Consensus 251 --l--------l~~f~----~~~w~vSWS~sGn~L-aVs~GdNkvtlwke~~-~Gkw~~v~~ 296 (299)
T KOG1332|consen 251 --L--------LEEFP----DVVWRVSWSLSGNIL-AVSGGDNKVTLWKENV-DGKWEEVGE 296 (299)
T ss_pred --c--------cccCC----cceEEEEEeccccEE-EEecCCcEEEEEEeCC-CCcEEEccc
Confidence 0 01233 124577899999855 4445566778888776 467766643
No 376
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.86 E-value=0.14 Score=56.43 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=28.0
Q ss_pred ceEEEEEccC-----CceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 218 PSLFVININS-----GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 218 ~~l~v~d~~~-----~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
..+-++|..+ .++... ++-..++..+..||||++ ++...
T Consensus 296 n~V~VID~~t~~~~~~~v~~y--IPVGKsPHGV~vSPDGky----lyVan 339 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRY--VPVPKNPHGVNTSPDGKY----FIANG 339 (635)
T ss_pred CEEEEEECCccccCCcceEEE--EECCCCccceEECCCCCE----EEEeC
Confidence 4677888877 345554 455567788999999997 66654
No 377
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.1 Score=48.63 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=83.4
Q ss_pred CCccCceEEEEEccCCceeec-cCCCC-----CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004141 213 AGKRQPSLFVININSGEVQAV-KGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l-~~~~~-----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
.+.....|..||+.-...... ...-. ...+..++.-|.|+. |+ ++- .++.-.++|
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl----l~-sg~--------------~dssc~lyd 259 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL----LA-SGH--------------ADSSCMLYD 259 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce----ee-ecc--------------CCCceEEEE
Confidence 344567888899865544333 11111 124567788898884 44 331 223445566
Q ss_pred cccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004141 287 VSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
+ .++. .++...+...++.++|||-.-++...+.+ ..|.+-|+++.-..++.
T Consensus 260 i-----------------rg~r~iq~f~phsadir~vrfsp~a~yllt~syd-----------~~ikltdlqgdla~el~ 311 (350)
T KOG0641|consen 260 I-----------------RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD-----------MKIKLTDLQGDLAHELP 311 (350)
T ss_pred e-----------------eCCceeeeeCCCccceeEEEeCCCceEEEEeccc-----------ceEEEeecccchhhcCc
Confidence 6 5554 45666777789999999998888877765 35788888775544432
Q ss_pred cceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 366 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
.-. +...++. .-...|.|..- -+++++.+....||.++
T Consensus 312 ~~v------v~ehkdk---------~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 312 IMV------VAEHKDK---------AIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred eEE------EEeccCc---------eEEEEecCccc-eeeeccCcceEEEeccC
Confidence 111 1111111 12446777653 33455555666788664
No 378
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.84 E-value=0.0096 Score=65.07 Aligned_cols=134 Identities=19% Similarity=0.163 Sum_probs=76.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc---------ch--------HHHHHHHHCCcEEEEECCCCCCC
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---------YS--------KSLAFLSSVGYSLLIVNYRGSLG 579 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~---------~~--------~~~~~la~~G~~Vv~~d~rG~~~ 579 (771)
.+..+..|++...+ ..+..|+||++.|||+.+.... .. ....-+ .+-..++.+|.+-..|
T Consensus 22 ~~~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW-~~~an~l~iD~PvGtG 98 (415)
T PF00450_consen 22 ENAHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSW-NKFANLLFIDQPVGTG 98 (415)
T ss_dssp TTEEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-G-GGTSEEEEE--STTST
T ss_pred CCcEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccc-ccccceEEEeecCceE
Confidence 45678888887664 4567899999999998753110 00 000011 1237888999775555
Q ss_pred CChhhhhcCCCCccccchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHhh----C------CCceeEEEecC
Q 004141 580 FGEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAARN 648 (771)
Q Consensus 580 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~~~v~~~ 648 (771)
|...........-.....+|+..+++.... .+.....++.|+|.|+||..+-.+|.. . +-.++++++.+
T Consensus 99 fS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGn 178 (415)
T PF00450_consen 99 FSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGN 178 (415)
T ss_dssp T-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEES
T ss_pred EeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecC
Confidence 654322211111112335677777765444 344566799999999999987766642 2 23479999999
Q ss_pred Cccch
Q 004141 649 PLCNL 653 (771)
Q Consensus 649 p~~~~ 653 (771)
|+++.
T Consensus 179 g~~dp 183 (415)
T PF00450_consen 179 GWIDP 183 (415)
T ss_dssp E-SBH
T ss_pred ccccc
Confidence 98875
No 379
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.76 E-value=0.086 Score=56.85 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=52.9
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
.|||+++..... ..+.++|.+ +|+....|. .....+..++||.||++.|-- +.....++
T Consensus 21 kPDGsqL~lAAg----------~rlliyD~n-dG~llqtLK-----gHKDtVycVAys~dGkrFASG-----~aDK~VI~ 79 (1081)
T KOG1538|consen 21 KPDGTQLILAAG----------SRLLVYDTS-DGTLLQPLK-----GHKDTVYCVAYAKDGKRFASG-----SADKSVII 79 (1081)
T ss_pred CCCCceEEEecC----------CEEEEEeCC-Ccccccccc-----cccceEEEEEEccCCceeccC-----CCceeEEE
Confidence 468888887642 356777764 333332222 222457889999999988753 33347778
Q ss_pred ecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 130 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 130 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
|.....-.+-....+. +.+.+|.|-...|+.-
T Consensus 80 W~~klEG~LkYSH~D~---------IQCMsFNP~~h~LasC 111 (1081)
T KOG1538|consen 80 WTSKLEGILKYSHNDA---------IQCMSFNPITHQLASC 111 (1081)
T ss_pred ecccccceeeeccCCe---------eeEeecCchHHHhhhc
Confidence 8422111111111111 2688999998888764
No 380
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=96.72 E-value=0.031 Score=56.66 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=46.8
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccc
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA 319 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~ 319 (771)
.+-..+|+||+.. +++.+ -...++.+|+ ..|. ...+.++...+
T Consensus 125 diydL~Ws~d~~~----l~s~s---------------~dns~~l~Dv-----------------~~G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 125 DIYDLAWSPDSNF----LVSGS---------------VDNSVRLWDV-----------------HAGQLLAILDDHEHYV 168 (434)
T ss_pred chhhhhccCCCce----eeeee---------------ccceEEEEEe-----------------ccceeEeecccccccc
Confidence 4567899999998 88876 2236777887 4454 45566677788
Q ss_pred cceeecCCCCEEEEEecCC
Q 004141 320 FFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~ 338 (771)
...+|.|-+++++-.+.+.
T Consensus 169 qgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ceeecchhhhhhhhhccCc
Confidence 9999999999998777664
No 381
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.085 Score=58.95 Aligned_cols=257 Identities=13% Similarity=0.121 Sum_probs=136.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.++-..+|.|.--+|+..--.+ ++.+|+ .+.....++ .| ||...++.|.|++-.++...++...
T Consensus 10 sRvKglsFHP~rPwILtslHsG-----~IQlWDYRM~tli~rFd----eH-----dGpVRgv~FH~~qplFVSGGDDykI 75 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSG-----VIQLWDYRMGTLIDRFD----EH-----DGPVRGVDFHPTQPLFVSGGDDYKI 75 (1202)
T ss_pred ccccceecCCCCCEEEEeecCc-----eeeeehhhhhhHHhhhh----cc-----CCccceeeecCCCCeEEecCCccEE
Confidence 4566789999988887543322 566663 233222111 12 2334899999999755444444333
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..|+............+..|.....|-...--.++...+..|.+|+..+++...+. +.....+.-+.|.|....
T Consensus 76 --kVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhptEDl--- 149 (1202)
T KOG0292|consen 76 --KVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHPTEDL--- 149 (1202)
T ss_pred --EEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeeccCCccce---
Confidence 34544333333334445555544334333333455557789999999998876653 555667888899998775
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC--------C----cc-eecCCCCcccccee
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED--------L----PV-VNLTESISSAFFPR 323 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~--------~----~~-~~lt~~~~~~~~p~ 323 (771)
||-.+ -+..|.++|+++..++...+-.-++...+ | -. ..|..+...+...+
T Consensus 150 -IVSaS---------------LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 150 -IVSAS---------------LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred -EEEec---------------ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 66554 33467788875442222111100000000 0 01 12333455567777
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004141 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l 403 (771)
|.|.=--|+-.+.+. ...||+|+-...- + + +.-.|.| .++.++-|.|.-. |
T Consensus 214 fhpTlpliVSG~DDR---------qVKlWrmnetKaW---------E-v--------DtcrgH~-nnVssvlfhp~q~-l 264 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADDR---------QVKLWRMNETKAW---------E-V--------DTCRGHY-NNVSSVLFHPHQD-L 264 (1202)
T ss_pred ecCCcceEEecCCcc---------eeeEEEeccccce---------e-e--------hhhhccc-CCcceEEecCccc-e
Confidence 887655444333332 3457776532111 0 0 1111222 2456677887655 6
Q ss_pred EEEeeeCCeeEEEEEEC
Q 004141 404 LLSSIWGSSQVIISVNV 420 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~ 420 (771)
+++.+.+...++|-++-
T Consensus 265 IlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred eEecCCCccEEEEeccc
Confidence 66776676667774443
No 382
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.68 E-value=0.16 Score=50.24 Aligned_cols=200 Identities=14% Similarity=0.204 Sum_probs=96.6
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
++++|.||.++|+.+.+.+ ..|+.++.++.-.+++.
T Consensus 25 SGLTy~pd~~tLfaV~d~~-------------------------------------------~~i~els~~G~vlr~i~- 60 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEP-------------------------------------------GEIYELSLDGKVLRRIP- 60 (248)
T ss_dssp EEEEEETTTTEEEEEETTT-------------------------------------------TEEEEEETT--EEEEEE-
T ss_pred cccEEcCCCCeEEEEECCC-------------------------------------------CEEEEEcCCCCEEEEEe-
Confidence 7999999999998886543 67899998765555553
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC--
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-- 313 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-- 313 (771)
..+......+++.-+|+ ++.+. .|...|+.++++... ..+ .....+.++
T Consensus 61 l~g~~D~EgI~y~g~~~-----~vl~~--------------Er~~~L~~~~~~~~~---~~~-------~~~~~~~~~l~ 111 (248)
T PF06977_consen 61 LDGFGDYEGITYLGNGR-----YVLSE--------------ERDQRLYIFTIDDDT---TSL-------DRADVQKISLG 111 (248)
T ss_dssp -SS-SSEEEEEE-STTE-----EEEEE--------------TTTTEEEEEEE-------TT---------EEEEEEEE--
T ss_pred CCCCCCceeEEEECCCE-----EEEEE--------------cCCCcEEEEEEeccc---ccc-------chhhceEEecc
Confidence 33334566778876664 44443 244478888773200 000 001112221
Q ss_pred ---CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCC
Q 004141 314 ---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 314 ---~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
.++......+|+|.++.|+.+..+. ...||.++...+.. .+. +.......... .....
T Consensus 112 ~~~~~N~G~EGla~D~~~~~L~v~kE~~---------P~~l~~~~~~~~~~-~~~-----~~~~~~~~~~~----~~~~d 172 (248)
T PF06977_consen 112 FPNKGNKGFEGLAYDPKTNRLFVAKERK---------PKRLYEVNGFPGGF-DLF-----VSDDQDLDDDK----LFVRD 172 (248)
T ss_dssp -S---SS--EEEEEETTTTEEEEEEESS---------SEEEEEEESTT-SS---E-----EEE-HHHH-HT------SS-
T ss_pred cccCCCcceEEEEEcCCCCEEEEEeCCC---------ChhhEEEccccCcc-cee-----ecccccccccc----ceecc
Confidence 1233478899999999988776543 24577666422111 000 00000000000 11123
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCCC---------CceeeEEeecCCEEEEEE
Q 004141 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAES---------NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 391 ~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~~---------~~~~~~~s~dg~~l~~~~ 451 (771)
+..+.+.|....|++.+.. ...|..+|. +|++. .+.-..+ ......++++| .||.+.
T Consensus 173 ~S~l~~~p~t~~lliLS~e--s~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvs 239 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDE--SRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLYIVS 239 (248)
T ss_dssp --EEEEETTTTEEEEEETT--TTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEE
T ss_pred ccceEEcCCCCeEEEEECC--CCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCC-CEEEEc
Confidence 4566777777777777543 345777885 45543 3322221 23446777776 465555
No 383
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.031 Score=53.20 Aligned_cols=174 Identities=13% Similarity=0.195 Sum_probs=107.2
Q ss_pred cCceEEEEEcc-CCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 216 RQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 216 ~~~~l~v~d~~-~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
+...|++++++ .+.++.+.-.....+...++||+.-.. +++++- .++.|.++|+.-
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~----~~~~a~--------------GDGSLrl~d~~~----- 92 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHEN----QVIAAS--------------GDGSLRLFDLTM----- 92 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcc----eEEEEe--------------cCceEEEeccCC-----
Confidence 56899999996 333433311223446778999999888 888762 333566666521
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 295 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
..+.+..+.++...+.+..|++--++++.++.-+ ..|.+|+..-.+..+.
T Consensus 93 ----------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD----------~TiKLW~~~r~~Sv~T---------- 142 (311)
T KOG0277|consen 93 ----------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD----------GTIKLWDPNRPNSVQT---------- 142 (311)
T ss_pred ----------CCcchhHHHhhhhheEEeccccccceeEEeeccC----------CceEeecCCCCcceEe----------
Confidence 3445566667788899999999887776666332 2355555433332111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
|.| ...-+....|||-..-++.+.+.++..+||-++.. |+...|.......-...|+.-...++++..
T Consensus 143 --------f~g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 143 --------FNG-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-GKFMSIEAHNSEILCCDWSKYNHNVLATGG 210 (311)
T ss_pred --------ecC-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-CceeEEEeccceeEeecccccCCcEEEecC
Confidence 222 11124567899877778888888888899988875 555556555433333455665555665543
No 384
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.62 E-value=0.11 Score=50.48 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=85.7
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecC-C----
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT-E---- 314 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt-~---- 314 (771)
.+.-+.|.|++++ |+-+.. .+|..++++ ++.+ ...+. .
T Consensus 125 ~i~cvew~Pns~k----lasm~d----------------n~i~l~~l~----------------ess~~vaev~ss~s~e 168 (370)
T KOG1007|consen 125 KINCVEWEPNSDK----LASMDD----------------NNIVLWSLD----------------ESSKIVAEVLSSESAE 168 (370)
T ss_pred ceeeEEEcCCCCe----eEEecc----------------CceEEEEcc----------------cCcchheeeccccccc
Confidence 4567789999999 887751 256677763 2222 11111 1
Q ss_pred CCccccceeecC--CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCC
Q 004141 315 SISSAFFPRFSP--DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 392 (771)
Q Consensus 315 ~~~~~~~p~~Sp--DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 392 (771)
......+-+||| ||..++.++.. .|+.||+.+.....-... .+...+.
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt~d~------------tl~~~D~RT~~~~~sI~d------------------AHgq~vr 218 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATTSDS------------TLQFWDLRTMKKNNSIED------------------AHGQRVR 218 (370)
T ss_pred ccceecccccCCCCccceEEEeCCC------------cEEEEEccchhhhcchhh------------------hhcceee
Confidence 122356789998 89988876643 488899876443111110 1112345
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004141 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 393 ~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
.+.|.|+-..++++...++..+||-....+-.++.+....-.+-...|.+..++|+.+.
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 77899999999988888888888855443333444444332222334555555555443
No 385
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.026 Score=52.10 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=66.9
Q ss_pred EEEecCCCCCCCCCcEEEEEcCCCCCCCC--------------CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004141 524 IFVSSSHKKDCSCDPLIVVLHGGPHSVSL--------------SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 524 ~~~~P~~~~~~~~~p~vv~~HGg~~~~~~--------------~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
+++..++. -..+..++|++||.+..... ....+.+....+.||-|++.|.--...+-....+ +
T Consensus 89 FiF~s~~~-lt~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~n--p 165 (297)
T KOG3967|consen 89 FIFMSEDA-LTNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRN--P 165 (297)
T ss_pred eEEEChhH-hcCccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccC--c
Confidence 34444332 23345689999996532211 1122456666789999999986532222222111 1
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC
Q 004141 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
..+-...++.+.....+++.. ..++.|+++.||+||..++.++.+.|+
T Consensus 166 ~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 166 QKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred chhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 112223455555555555543 467889999999999999999999875
No 386
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.57 E-value=0.14 Score=51.23 Aligned_cols=229 Identities=10% Similarity=0.098 Sum_probs=133.3
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCc
Q 004141 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQT 144 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (771)
+.++..++.+-.||+.++.- .+| ++.....+..+++|+---++.-..+. + ...-|+-.. .+++....+
T Consensus 166 f~tgs~DrtikIwDlatg~L---klt---ltGhi~~vr~vavS~rHpYlFs~ged--k---~VKCwDLe~-nkvIR~YhG 233 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLATGQL---KLT---LTGHIETVRGVAVSKRHPYLFSAGED--K---QVKCWDLEY-NKVIRHYHG 233 (460)
T ss_pred EEecCCCceeEEEEcccCeE---EEe---ecchhheeeeeeecccCceEEEecCC--C---eeEEEechh-hhhHHHhcc
Confidence 44555667777778854421 222 22234567788999877777433222 2 334442111 112221111
Q ss_pred ccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004141 145 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 145 ~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
....| .++...|--..|+..+.+...+ .|+............+......+.+.+--++.+++..+..|.+||
T Consensus 234 HlS~V------~~L~lhPTldvl~t~grDst~R--vWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 234 HLSGV------YCLDLHPTLDVLVTGGRDSTIR--VWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred cccee------EEEeccccceeEEecCCcceEE--EeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 11111 4778888877777766655443 455433333334444444455555665556777788889999999
Q ss_pred ccCCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCC
Q 004141 225 INSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 303 (771)
Q Consensus 225 ~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 303 (771)
+..|+. ..+ +.....+...+..|+-.. ++-.+ ...|-.++++
T Consensus 306 l~agkt~~tl--t~hkksvral~lhP~e~~----fASas----------------~dnik~w~~p--------------- 348 (460)
T KOG0285|consen 306 LRAGKTMITL--THHKKSVRALCLHPKENL----FASAS----------------PDNIKQWKLP--------------- 348 (460)
T ss_pred eccCceeEee--ecccceeeEEecCCchhh----hhccC----------------CccceeccCC---------------
Confidence 987764 444 677778888888987654 33222 1146666663
Q ss_pred CCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004141 304 SEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 304 ~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
++.-+..|+.+...+.......||= ++...+ ...|+.|||.+|-..|
T Consensus 349 -~g~f~~nlsgh~~iintl~~nsD~v--~~~G~d----------ng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 349 -EGEFLQNLSGHNAIINTLSVNSDGV--LVSGGD----------NGSIMFWDWKSGHNYQ 395 (460)
T ss_pred -ccchhhccccccceeeeeeeccCce--EEEcCC----------ceEEEEEecCcCcccc
Confidence 4445666777777777777777773 333333 2469999999876644
No 387
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.54 E-value=0.038 Score=59.45 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=37.0
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcc-eEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL-EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
.+...+|-|||++|+...... +++.+ .+|.. ..+-..... ..+++||.||+++|..+
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-----lliyD~ndG~llqtLKgHKDt----------VycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-----LLVYDTSDGTLLQPLKGHKDT----------VYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecCCE-----EEEEeCCCcccccccccccce----------EEEEEEccCCceeccCC
Confidence 367899999999998775443 66666 33332 222211112 26999999999888754
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.54 E-value=0.13 Score=50.20 Aligned_cols=183 Identities=14% Similarity=0.111 Sum_probs=99.9
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecC---CcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 103 AVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVP---QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.=+|||||++|+-..+..+.+..++-+++ .....++-..+ -+.| .+.|.+||+.|+.+. ..-...
T Consensus 118 HGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH----------ev~lm~DGrtlvvan-GGIeth 186 (366)
T COG3490 118 HGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH----------EVTLMADGRTLVVAN-GGIETH 186 (366)
T ss_pred ccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc----------eeEEecCCcEEEEeC-Cceecc
Confidence 45799999988554444444555666663 22333333322 2333 789999999887753 211111
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee-eccCCC---CCCccceEEEecCCCCC
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIP---KSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~-~l~~~~---~~~~~~~~~wspDg~~~ 254 (771)
|.+.. -+.......+.|.++|..+|++. +.+ .| ...++..+..-+||+
T Consensus 187 pdfgR-------------------------~~lNldsMePSlvlld~atG~liekh~-Lp~~l~~lSiRHld~g~dgt-- 238 (366)
T COG3490 187 PDFGR-------------------------TELNLDSMEPSLVLLDAATGNLIEKHT-LPASLRQLSIRHLDIGRDGT-- 238 (366)
T ss_pred cccCc-------------------------cccchhhcCccEEEEeccccchhhhcc-CchhhhhcceeeeeeCCCCc--
Confidence 11100 12222335689999997777643 222 33 234788889999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC-------CccccceeecCC
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-------ISSAFFPRFSPD 327 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-------~~~~~~p~~SpD 327 (771)
|+|...-.+++. ...-|.-.-. .+...+.|.-. ...+.+.+..-+
T Consensus 239 ---vwfgcQy~G~~~--------d~ppLvg~~~-----------------~g~~l~~~~~pee~~~~~anYigsiA~n~~ 290 (366)
T COG3490 239 ---VWFGCQYRGPRN--------DLPPLVGHFR-----------------KGEPLEFLDLPEEQTAAFANYIGSIAANRR 290 (366)
T ss_pred ---EEEEEEeeCCCc--------cCCcceeecc-----------------CCCcCcccCCCHHHHHHHHhhhhheeeccc
Confidence 787664333211 1112222221 22222222111 224667777766
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004141 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
-..++.++.+ .+...+||.++|...
T Consensus 291 ~glV~lTSP~----------GN~~vi~da~tG~vv 315 (366)
T COG3490 291 DGLVALTSPR----------GNRAVIWDAATGAVV 315 (366)
T ss_pred CCeEEEecCC----------CCeEEEEEcCCCcEE
Confidence 6666666654 256889999998763
No 389
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=96.54 E-value=0.15 Score=52.71 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=88.6
Q ss_pred cccCCccCceEEEEEccCCce--eecc----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004141 210 ETYAGKRQPSLFVININSGEV--QAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~--~~l~----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
.++.+.....|++||+..... ..+. -......+..++|+|-.+. |+-.. ..++.|.
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~----lF~sv--------------~dd~~L~ 253 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED----LFGSV--------------GDDGKLM 253 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh----hheee--------------cCCCeEE
Confidence 344444568899999865432 1110 0223446778899997775 43322 1345788
Q ss_pred EEecccccchhhhhhhhcCCCCC--Ccc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 284 AVRVSLYKSEASELELKESSSED--LPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~--~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
++|+ -+ .+. ...-.+.+.+.+.+|+|-+..|+-+... ...|.+||+..=.
T Consensus 254 iwD~-----------------R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~----------D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 254 IWDT-----------------RSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA----------DKTVALWDLRNLN 306 (422)
T ss_pred EEEc-----------------CCCCCCCcccccccCCceeEEEeCCCCCceEEeccC----------CCcEEEeechhcc
Confidence 8887 32 222 2223345668899999977766544432 2458888876532
Q ss_pred CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 361 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
....+ |.+ +...+..+.|||+...++.++..+++..+|-+..-
T Consensus 307 ~~lh~-----------------~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 307 KPLHT-----------------FEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred cCcee-----------------ccC-CCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 21111 111 11235578899999999999988888778866543
No 390
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.53 E-value=0.055 Score=50.92 Aligned_cols=236 Identities=14% Similarity=0.102 Sum_probs=120.5
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
....|.-||++.+--..+++.+ .|........+....+..-.-+...+-|-.......+...+++||+++|++.+--
T Consensus 21 ~avryN~dGnY~ltcGsdrtvr--LWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~- 97 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVR--LWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF- 97 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEE--eecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-
Confidence 5778888888776655555433 4443322222221111111111122223233344556789999999999875441
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE- 314 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~- 314 (771)
-.....+..+.|.-+.. +++.+. -++.+..+|-- +.+-++.++..
T Consensus 98 rgH~aqVNtV~fNeesS-----Vv~Sgs--------------fD~s~r~wDCR---------------S~s~ePiQilde 143 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESS-----VVASGS--------------FDSSVRLWDCR---------------SRSFEPIQILDE 143 (307)
T ss_pred ccccceeeEEEecCcce-----EEEecc--------------ccceeEEEEcc---------------cCCCCccchhhh
Confidence 23344677888887665 666652 22245555531 03344444433
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004141 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
....+.+...+ +..|+-.+.+ ..+..+|+..|.... +. ....+...
T Consensus 144 a~D~V~Si~v~--~heIvaGS~D-----------GtvRtydiR~G~l~s-----------------Dy----~g~pit~v 189 (307)
T KOG0316|consen 144 AKDGVSSIDVA--EHEIVAGSVD-----------GTVRTYDIRKGTLSS-----------------DY----FGHPITSV 189 (307)
T ss_pred hcCceeEEEec--ccEEEeeccC-----------CcEEEEEeecceeeh-----------------hh----cCCcceeE
Confidence 33345555554 3445444433 246677776655311 00 11235678
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCC--ceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESN--FSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 395 ~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~--~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+||+||.-++.++- + ..|-.+|..||++-..-.+... +-....-.+....++..+ .-..+|+.++..+
T Consensus 190 s~s~d~nc~La~~l-~--stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgS---EDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 190 SFSKDGNCSLASSL-D--STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS---EDGKVYFWDLVDE 259 (307)
T ss_pred EecCCCCEEEEeec-c--ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEecc---CCceEEEEEeccc
Confidence 99999997766543 2 3466678888886544332221 111111113344444443 2344677776544
No 391
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.0097 Score=60.21 Aligned_cols=113 Identities=11% Similarity=0.113 Sum_probs=67.6
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC--cEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG--YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G--~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
..+-++||+||..... ...-...++-....| .+.+.+..+..+ .-.......+-..+...++...+++|.+...
T Consensus 114 ~~k~vlvFvHGfNntf-~dav~R~aqI~~d~g~~~~pVvFSWPS~g---~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~ 189 (377)
T COG4782 114 SAKTVLVFVHGFNNTF-EDAVYRTAQIVHDSGNDGVPVVFSWPSRG---SLLGYNYDRESTNYSRPALERLLRYLATDKP 189 (377)
T ss_pred CCCeEEEEEcccCCch-hHHHHHHHHHHhhcCCCcceEEEEcCCCC---eeeecccchhhhhhhHHHHHHHHHHHHhCCC
Confidence 4567999999954432 222223444444444 344555555311 1100011112223346778888888887743
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhC--------CCceeEEEecCCccch
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNL 653 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~p~~~~ 653 (771)
..+|.|+.||||.++++..+.+- +..|+-+|+.+|=.|.
T Consensus 190 --~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 190 --VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred --CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 57899999999999999776541 3357888888886654
No 392
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.50 E-value=0.029 Score=57.85 Aligned_cols=215 Identities=13% Similarity=0.109 Sum_probs=114.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+...+-+|+|.+|+- .... ++-.+|.+. .|....+... ...+ .++.||-||++|+..+.+....
T Consensus 82 g~v~al~s~n~G~~l~a-g~i~-g~lYlWels-sG~LL~v~~aHYQ~I----------TcL~fs~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLA-GTIS-GNLYLWELS-SGILLNVLSAHYQSI----------TCLKFSDDGSHIITGSKDGAVL 148 (476)
T ss_pred cceeeeecCCCceEEEe-eccc-CcEEEEEec-cccHHHHHHhhccce----------eEEEEeCCCcEEEecCCCccEE
Confidence 55778888999998853 3222 333444443 3443322221 2233 5889999999888777665432
Q ss_pred CCCccCC----CCCC-----CCCCccCCCCCCcc--cccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEE
Q 004141 178 KPTFSLG----STKG-----GSSDKDCNSWKGQG--DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVV 246 (771)
Q Consensus 178 ~~~~~~~----~~~~-----~~~~~~~~~~~~~~--~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ 246 (771)
.|... .... ...+.++.-...++ .+.+--...++...+..+.+||+..|.+..- ..-+..+..++
T Consensus 149 --vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt--i~fp~si~av~ 224 (476)
T KOG0646|consen 149 --VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT--ITFPSSIKAVA 224 (476)
T ss_pred --EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE--EecCCcceeEE
Confidence 22210 0011 11122221111111 1111113444555678899999999975433 34455677888
Q ss_pred EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC-CCCCCcceecCCCCc--ccccee
Q 004141 247 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES-SSEDLPVVNLTESIS--SAFFPR 323 (771)
Q Consensus 247 wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~lt~~~~--~~~~p~ 323 (771)
..|-++ .+|++.+. +.||..++-.-+.++...+ .+. ...+.+...+..+.+ .+...+
T Consensus 225 lDpae~-----~~yiGt~~--------------G~I~~~~~~~~~~~~~~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 225 LDPAER-----VVYIGTEE--------------GKIFQNLLFKLSGQSAGVN-QKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred Eccccc-----EEEecCCc--------------ceEEeeehhcCCccccccc-ccccccccceeeeeccccCCcceeEEE
Confidence 999776 66766433 3566666522111111111 011 112223444555555 688899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.|-||+.|+-.+.+ .++.+||..+.+.
T Consensus 285 is~DgtlLlSGd~d-----------g~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 285 ISTDGTLLLSGDED-----------GKVCVWDIYSKQC 311 (476)
T ss_pred EecCccEEEeeCCC-----------CCEEEEecchHHH
Confidence 99999987754443 3588888776554
No 393
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.49 E-value=0.034 Score=61.03 Aligned_cols=129 Identities=14% Similarity=0.213 Sum_probs=76.4
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCc
Q 004141 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQT 144 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (771)
+..+.+++.+..||+..... ++.+.+ ....+..++|||.-... |++..++| ++.+|+-.++.+-...-..
T Consensus 149 liSGSQDg~vK~~DlR~~~S--~~t~~~----nSESiRDV~fsp~~~~~-F~s~~dsG---~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKS--KSTFRS----NSESIRDVKFSPGYGNK-FASIHDSG---YLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred EEecCCCceEEEEeeecccc--cccccc----cchhhhceeeccCCCce-EEEecCCc---eEEEeeccCchhHHHHhhc
Confidence 44566778888888865533 222222 23458889999955443 44443334 5555543333222111111
Q ss_pred ccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004141 145 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 145 ~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
..|.| .++.|+|++.+||..+ ++..+.+||
T Consensus 219 H~GpV------~c~nwhPnr~~lATGG--------------------------------------------RDK~vkiWd 248 (839)
T KOG0269|consen 219 HNGPV------LCLNWHPNREWLATGG--------------------------------------------RDKMVKIWD 248 (839)
T ss_pred ccCce------EEEeecCCCceeeecC--------------------------------------------CCccEEEEe
Confidence 22222 6899999999998853 235788899
Q ss_pred ccCCceeeccCCCCCCccceEEEecCCCC
Q 004141 225 INSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
..+++...+.-+..-..++.+.|-|+-..
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccc
Confidence 88776544421333456788999999876
No 394
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=96.49 E-value=0.019 Score=72.79 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=63.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.++++||.++. ...|......| ..++.|+.++.+|. +... .....++++.+.+...+... ....
T Consensus 1068 ~~~l~~lh~~~g~--~~~~~~l~~~l-~~~~~v~~~~~~g~---~~~~-------~~~~~l~~la~~~~~~i~~~-~~~~ 1133 (1296)
T PRK10252 1068 GPTLFCFHPASGF--AWQFSVLSRYL-DPQWSIYGIQSPRP---DGPM-------QTATSLDEVCEAHLATLLEQ-QPHG 1133 (1296)
T ss_pred CCCeEEecCCCCc--hHHHHHHHHhc-CCCCcEEEEECCCC---CCCC-------CCCCCHHHHHHHHHHHHHhh-CCCC
Confidence 3668999997665 33566666666 45699999999984 2210 11123444444333333221 1134
Q ss_pred eEEEEEcChhHHHHHHHHhh---CCCceeEEEecCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNP 649 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~---~p~~~~~~v~~~p 649 (771)
++.++|||+||.++..++.+ .++.+..+++..+
T Consensus 1134 p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1134 PYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred CEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 79999999999999999885 4677777776654
No 395
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.43 E-value=0.39 Score=48.23 Aligned_cols=200 Identities=14% Similarity=0.124 Sum_probs=115.3
Q ss_pred ccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 97 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 97 ~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
..+.+..+++-|-.++++..+.+ ....|| ..|++...+. .-..+ .++.+|+---+|+...++
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~LkltltGhi~~v----------r~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLTLTGHIETV----------RGVAVSKRHPYLFSAGED 214 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEeecchhhee----------eeeeecccCceEEEecCC
Confidence 34567778888887777654433 255566 3444332222 11122 588899888888777766
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
+..+ -|+..+.+-.+....+.+-..-...-|-....+++..+..+.+||+.+....... ......+.++..-|-.-+
T Consensus 215 k~VK--CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-~GH~~~V~~V~~~~~dpq 291 (460)
T KOG0285|consen 215 KQVK--CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-SGHTNPVASVMCQPTDPQ 291 (460)
T ss_pred CeeE--EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe-cCCCCcceeEEeecCCCc
Confidence 6443 1222111111111111111111112222334556667889999999887544441 334556778888876665
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEE
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
|+..+ -++.|..+|+- .+.....||.+..+++.....|+-..+|-
T Consensus 292 ----vit~S---------------~D~tvrlWDl~----------------agkt~~tlt~hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 292 ----VITGS---------------HDSTVRLWDLR----------------AGKTMITLTHHKKSVRALCLHPKENLFAS 336 (460)
T ss_pred ----eEEec---------------CCceEEEeeec----------------cCceeEeeecccceeeEEecCCchhhhhc
Confidence 77665 33468888872 55667889999999999999998765443
Q ss_pred EecCCCCCCCCccccccceeeecCCCCC
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.+.+ .|..+++.-|..
T Consensus 337 as~d------------nik~w~~p~g~f 352 (460)
T KOG0285|consen 337 ASPD------------NIKQWKLPEGEF 352 (460)
T ss_pred cCCc------------cceeccCCccch
Confidence 3322 355666655543
No 396
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.41 E-value=0.19 Score=52.08 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=38.0
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC--CCCceeeEEeecCCEEEEEE
Q 004141 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 392 ~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~dg~~l~~~~ 451 (771)
.+++-.|... |+.+.++.+..+||.+.-.-..+..|..- .+.+....|+.+|+.|++..
T Consensus 384 tsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 384 TSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred eeeEecccCc-eEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 3444455554 77888899999999987543344444322 23445567888999776653
No 397
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.36 E-value=0.18 Score=49.85 Aligned_cols=168 Identities=18% Similarity=0.249 Sum_probs=86.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...+..+|.||.++|+.+.+. ...++.+...|+..+.+.+.. .+ .+.++++.-+|+ ++.+.++
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~---~~~i~els~~G~vlr~i~l~g--~~------D~EgI~y~g~~~-~vl~~Er----- 84 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDE---PGEIYELSLDGKVLRRIPLDG--FG------DYEGITYLGNGR-YVLSEER----- 84 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETT---TTEEEEEETT--EEEEEE-SS---S------SEEEEEE-STTE-EEEEETT-----
T ss_pred CCccccEEcCCCCeEEEEECC---CCEEEEEcCCCCEEEEEeCCC--CC------CceeEEEECCCE-EEEEEcC-----
Confidence 347889999999998877664 467888886666666666532 11 226888887775 3333332
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC--Cc-----eeecc-CCC--CCCccceEEEe
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS--GE-----VQAVK-GIP--KSLSVGQVVWA 248 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~--~~-----~~~l~-~~~--~~~~~~~~~ws 248 (771)
...|+++++.. .. .+.+. +.+ .+.+...++|.
T Consensus 85 --------------------------------------~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D 126 (248)
T PF06977_consen 85 --------------------------------------DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD 126 (248)
T ss_dssp --------------------------------------TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE
T ss_pred --------------------------------------CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc
Confidence 35677776622 21 12221 223 34567899999
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC---CCCccccceeec
Q 004141 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT---ESISSAFFPRFS 325 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt---~~~~~~~~p~~S 325 (771)
|.+++ |+.+. +..| ..||.++.... ...+ .......+. .......+..+.
T Consensus 127 ~~~~~----L~v~k-E~~P------------~~l~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 127 PKTNR----LFVAK-ERKP------------KRLYEVNGFPG---GFDL-------FVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp TTTTE----EEEEE-ESSS------------EEEEEEESTT----SS---------EEEE-HHHH-HT--SS---EEEEE
T ss_pred CCCCE----EEEEe-CCCC------------hhhEEEccccC---ccce-------eeccccccccccceeccccceEEc
Confidence 99987 77664 3333 24565553000 0000 000000000 011234667788
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
|....|+.+|... ..|..+|.++
T Consensus 180 p~t~~lliLS~es----------~~l~~~d~~G 202 (248)
T PF06977_consen 180 PRTGHLLILSDES----------RLLLELDRQG 202 (248)
T ss_dssp TTTTEEEEEETTT----------TEEEEE-TT-
T ss_pred CCCCeEEEEECCC----------CeEEEECCCC
Confidence 8888888888764 4577777443
No 398
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.36 E-value=0.019 Score=58.81 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=61.3
Q ss_pred HHHHCCcEEEEECCCCCCC---CChhhh-hc--CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHH
Q 004141 561 FLSSVGYSLLIVNYRGSLG---FGEEAL-QS--LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 634 (771)
Q Consensus 561 ~la~~G~~Vv~~d~rG~~~---~g~~~~-~~--~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a 634 (771)
...+.+..+|.++.|--++ +|.... +. +..-..++..+|....+.+|++........|+++|.|+||++++++=
T Consensus 106 ~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfR 185 (492)
T KOG2183|consen 106 LAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFR 185 (492)
T ss_pred hhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHH
Confidence 3346788899999885211 222211 00 00111234578888888898887556678899999999999999999
Q ss_pred hhCCCceeEEEe-cCCcc
Q 004141 635 GQAPDKFVAAAA-RNPLC 651 (771)
Q Consensus 635 ~~~p~~~~~~v~-~~p~~ 651 (771)
.++|..+.++.+ .+|+.
T Consensus 186 lKYPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 186 LKYPHIVLGALAASAPVL 203 (492)
T ss_pred hcChhhhhhhhhccCceE
Confidence 999987766554 44544
No 399
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.32 E-value=0.1 Score=56.45 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=22.0
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecC
Q 004141 281 ALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.|..+|+ ++++. +++.-. .+..+.||+||+.+++++..
T Consensus 127 ~i~~yDw-----------------~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 127 FICFYDW-----------------ETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp EEEEE-T-----------------TT--EEEEESS---E-EEEEE-TTSSEEEEE-S-
T ss_pred CEEEEEh-----------------hHcceeeEEecC--CCcEEEEECCCCEEEEEeCC
Confidence 4888888 55543 444322 26789999999999998755
No 400
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=96.31 E-value=0.01 Score=62.88 Aligned_cols=91 Identities=22% Similarity=0.271 Sum_probs=65.3
Q ss_pred CCCcEEEEEcCCCCCCCCC-cchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC-
Q 004141 535 SCDPLIVVLHGGPHSVSLS-SYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG- 611 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~-~~~~~~-~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~- 611 (771)
..+-+|+.+|||++.+... ....+. ++..+.|+.|+.+||.-.++ .......+++.-|.-|++.+.
T Consensus 394 ~S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPE-----------aPFPRaleEv~fAYcW~inn~a 462 (880)
T KOG4388|consen 394 RSRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPE-----------APFPRALEEVFFAYCWAINNCA 462 (880)
T ss_pred CCceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCC-----------CCCCcHHHHHHHHHHHHhcCHH
Confidence 3456899999998765332 222333 34457899999999987544 233445889999999999863
Q ss_pred --CCCCCeEEEEEcChhHHHHHHHHhh
Q 004141 612 --LANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 612 --~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
....+||++.|.|.||.+.+..+.+
T Consensus 463 llG~TgEriv~aGDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 463 LLGSTGERIVLAGDSAGGNLCFTVALR 489 (880)
T ss_pred HhCcccceEEEeccCCCcceeehhHHH
Confidence 2457899999999999987766543
No 401
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=96.27 E-value=0.0087 Score=50.45 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=48.1
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 704 ~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
..|+|++.++.|+..|.+.++.+.++|.. .+++.+++.||+.... ...-..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~~-~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYAG-GSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceecC-CChHHHHHHHHHHH
Confidence 48999999999999999999999999875 5899999999987642 22345667777775
No 402
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.24 E-value=0.58 Score=48.60 Aligned_cols=205 Identities=12% Similarity=0.106 Sum_probs=100.1
Q ss_pred ccceEEEeCCCCC-eEEEEecCCCCCCeEEEEec-CCcceEEEecCCcccccccCCCcccceeecCCCC-eEEEEecCCC
Q 004141 99 TGASAVVPSPSGS-KLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~-~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~~~~ 175 (771)
+.+...+|.|.-. +++ +.....|.-.+|.+.. ......+.-. ....+ ..+++.|+|-.. +|+-.+.+++
T Consensus 187 ~Rit~l~fHPt~~~~lv-a~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~------~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLV-AVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSG------PVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceEEEEecccCcceEE-EEccCCCcEEEEecCCCCCccCceEEe-ccCCc------cccceEecCCChhheeeeccCce
Confidence 4578889999887 444 3333335444555431 1111111111 11111 237899999654 4544555555
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCC
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
.+...+................|.....+..+-+..+.+.....+-+||+.++. ...+ .-.+-.+.++++.|--.+
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~--~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL--RLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh--hhhhcccceeecCCCCch
Confidence 443222211111111111112222222233332333333333456667765443 3334 233447889999998887
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc--ceecCCCCccccceeecCCCCEE
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
+..++- .+ ....++|+-. + .+.. ..-...+...+.+..|||+|-.|
T Consensus 337 ----~laT~s-------------~D-~T~kIWD~R~-------l-------~~K~sp~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 337 ----FLATAS-------------LD-QTAKIWDLRQ-------L-------RGKASPFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred ----heeecc-------------cC-cceeeeehhh-------h-------cCCCCcceecccccceeeeeEEcCCCCce
Confidence 444331 11 1233444310 0 1111 12334566679999999999888
Q ss_pred EEEecCCCCCCCCccccccceeeec
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
+....+. .|.++|.
T Consensus 385 ~TT~~D~-----------~IRv~ds 398 (498)
T KOG4328|consen 385 LTTCQDN-----------EIRVFDS 398 (498)
T ss_pred EeeccCC-----------ceEEeec
Confidence 8877664 4777775
No 403
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.15 Score=54.54 Aligned_cols=102 Identities=12% Similarity=0.160 Sum_probs=57.4
Q ss_pred cccceeecCCCCeEEEEecCCCCCCCCccCCCC-CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-e
Q 004141 154 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-Q 231 (771)
Q Consensus 154 ~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~ 231 (771)
.+..+.|.-+|.+|+.+.-....+.-+...... ..+..+.....-.....|-|---..+ ...+..+.++|+..+++ +
T Consensus 523 ~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lf-VaTq~~vRiYdL~kqelvK 601 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLF-VATQRSVRIYDLSKQELVK 601 (733)
T ss_pred ccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEE-EEeccceEEEehhHHHHHH
Confidence 346889999999999988765544323221111 11111111111111222333321111 22346788888877653 4
Q ss_pred eccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 232 AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 232 ~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
.| .++...+..++.+|.|.. |+..+
T Consensus 602 kL--~tg~kwiS~msihp~GDn----li~gs 626 (733)
T KOG0650|consen 602 KL--LTGSKWISSMSIHPNGDN----LILGS 626 (733)
T ss_pred HH--hcCCeeeeeeeecCCCCe----EEEec
Confidence 44 556667888999999998 88876
No 404
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=96.21 E-value=0.1 Score=54.44 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=83.6
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
+....|||.-+.++.+...+ + +..+|+-........... .|. .+..+++|||-...|+....
T Consensus 167 vRll~ys~skr~lL~~asd~-G---~VtlwDv~g~sp~~~~~~-~Hs-----AP~~gicfspsne~l~vsVG-------- 228 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDK-G---AVTLWDVQGMSPIFHASE-AHS-----APCRGICFSPSNEALLVSVG-------- 228 (673)
T ss_pred EEEeecccccceeeEeeccC-C---eEEEEeccCCCcccchhh-hcc-----CCcCcceecCCccceEEEec--------
Confidence 56889999999988776544 3 666774322233332211 110 01258999998776655321
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
-+..|+++|....+...- +..+.....++|+++|.. |+.
T Consensus 229 -----------------------------------~Dkki~~yD~~s~~s~~~--l~y~~Plstvaf~~~G~~----L~a 267 (673)
T KOG4378|consen 229 -----------------------------------YDKKINIYDIRSQASTDR--LTYSHPLSTVAFSECGTY----LCA 267 (673)
T ss_pred -----------------------------------ccceEEEeecccccccce--eeecCCcceeeecCCceE----EEe
Confidence 235789999876543332 234446678999999986 665
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCC
Q 004141 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD 327 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpD 327 (771)
.. -.+.|+.+|+-. ....+..+..+..++...+|=|-
T Consensus 268 G~---------------s~G~~i~YD~R~---------------~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 268 GN---------------SKGELIAYDMRS---------------TKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ec---------------CCceEEEEeccc---------------CCCCceEeeecccceeEEEeeec
Confidence 43 334899999831 22334556666666777777553
No 405
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.18 E-value=0.13 Score=50.69 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=67.3
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeec
Q 004141 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAV 233 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l 233 (771)
+.+-+|++|++.||...+ ..++.++...+.. .+..
T Consensus 13 itchAwn~drt~iAv~~~--------------------------------------------~~evhiy~~~~~~~w~~~ 48 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPN--------------------------------------------NHEVHIYSMLGADLWEPA 48 (361)
T ss_pred eeeeeecCCCceEEeccC--------------------------------------------CceEEEEEecCCCCceec
Confidence 368899999999998532 2345555544444 2222
Q ss_pred c-CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---c
Q 004141 234 K-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---V 309 (771)
Q Consensus 234 ~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~ 309 (771)
- -...+..+..+.|+|-+.+ |+-.+ .+|+..+|... .+++ .
T Consensus 49 htls~Hd~~vtgvdWap~snr----Ivtcs-------------~drnayVw~~~------------------~~~~Wkpt 93 (361)
T KOG1523|consen 49 HTLSEHDKIVTGVDWAPKSNR----IVTCS-------------HDRNAYVWTQP------------------SGGTWKPT 93 (361)
T ss_pred eehhhhCcceeEEeecCCCCc----eeEcc-------------CCCCccccccC------------------CCCeeccc
Confidence 1 0344557778999999998 98876 23545666553 2222 2
Q ss_pred eecCCCCccccceeecCCCCEEEEEec
Q 004141 310 VNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 310 ~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
-.|...++....+.|||.+.++|..+.
T Consensus 94 lvLlRiNrAAt~V~WsP~enkFAVgSg 120 (361)
T KOG1523|consen 94 LVLLRINRAATCVKWSPKENKFAVGSG 120 (361)
T ss_pred eeEEEeccceeeEeecCcCceEEeccC
Confidence 334456778899999999999887664
No 406
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.16 E-value=0.14 Score=52.17 Aligned_cols=160 Identities=9% Similarity=0.073 Sum_probs=81.7
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccc-cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEE---ecCCcc
Q 004141 70 RKKFMLSTVISKENENSVTFQWAPFPVEMT-GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF---HVPQTV 145 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~-~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 145 (771)
..+.+..+.++..|...++-+ ..|-.+.. -...++++.++.+++|++..+ .++.+...+...+.. .+....
T Consensus 155 ~DGsl~~v~Ld~~Gk~~~~~t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G----~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 155 GDGSLLTVTLDADGKEAQKST-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEG----NVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp TTSCEEEEEETSTSSEEEEEE-EESSTTTS-B-S--EEETTTTEEEEEBTTS----EEEEEEETTSSEEEEEEEESS-HH
T ss_pred cCCceEEEEECCCCCEeEeec-cccCCCCcccccccceECCCCeEEEEecCC----EEEEEeccCCcccccCcccccCcc
Confidence 445566666655554443222 22322111 234678888888888987655 577777433332222 211111
Q ss_pred -cccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004141 146 -HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 146 -~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
...-+-.+.+.-+++.+...+|+......... --......||++|
T Consensus 230 e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~g----------------------------------sHKdpgteVWv~D 275 (342)
T PF06433_consen 230 EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEG----------------------------------SHKDPGTEVWVYD 275 (342)
T ss_dssp HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-----------------------------------TTS-EEEEEEEE
T ss_pred ccccCcCCcceeeeeeccccCeEEEEecCCCCC----------------------------------CccCCceEEEEEE
Confidence 00001111223466766666665544322110 0011346899999
Q ss_pred ccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004141 225 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
+++++...- ++-+..+.++..|.|.+= ++|.... ....|+++|.
T Consensus 276 ~~t~krv~R--i~l~~~~~Si~Vsqd~~P----~L~~~~~-------------~~~~l~v~D~ 319 (342)
T PF06433_consen 276 LKTHKRVAR--IPLEHPIDSIAVSQDDKP----LLYALSA-------------GDGTLDVYDA 319 (342)
T ss_dssp TTTTEEEEE--EEEEEEESEEEEESSSS-----EEEEEET-------------TTTEEEEEET
T ss_pred CCCCeEEEE--EeCCCccceEEEccCCCc----EEEEEcC-------------CCCeEEEEeC
Confidence 999986544 343334567888999987 7776522 2347999998
No 407
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.11 E-value=1.3 Score=43.68 Aligned_cols=230 Identities=12% Similarity=0.055 Sum_probs=112.4
Q ss_pred eEEEEEeechhh-cccceeEEEEEEeecCCC-CccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC
Q 004141 55 QAMFSISQPNLL-ANKRKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ 132 (771)
Q Consensus 55 ~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~ 132 (771)
-|+|+..+.++. .++-.+.++.|.+...+. .++-.... .+.+....||-||.++ |+..-+ +...+|.+- .
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~-----~~PvL~v~WsddgskV-f~g~~D-k~~k~wDL~-S 103 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSH-----DGPVLDVCWSDDGSKV-FSGGCD-KQAKLWDLA-S 103 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhcc-----CCCeEEEEEccCCceE-EeeccC-CceEEEEcc-C
Confidence 344554333332 344455667777755422 11111111 1458899999999877 554433 333344333 3
Q ss_pred CcceEEEecCCcccccccCCCcccceeecCCCC--eEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc--
Q 004141 133 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDET--LIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW-- 208 (771)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-- 208 (771)
++..++-.....+ ....|=+... -|+..+-+++.+ +|+...........- .+-+|..|-
T Consensus 104 ~Q~~~v~~Hd~pv----------kt~~wv~~~~~~cl~TGSWDKTlK--fWD~R~~~pv~t~~L-----PeRvYa~Dv~~ 166 (347)
T KOG0647|consen 104 GQVSQVAAHDAPV----------KTCHWVPGMNYQCLVTGSWDKTLK--FWDTRSSNPVATLQL-----PERVYAADVLY 166 (347)
T ss_pred CCeeeeeecccce----------eEEEEecCCCcceeEeccccccee--ecccCCCCeeeeeec-----cceeeehhccC
Confidence 3444443333333 4666666554 455556565544 454221111110000 011122221
Q ss_pred CcccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004141 209 GETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
--..+.....+|.+++|+++.. +++. .+-......++.-+|.+. .+..+-+ ....|..+|
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~d~~~----~alGsiE-------------Grv~iq~id 228 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIE-SPLKWQTRCVACFQDKDG----FALGSIE-------------GRVAIQYID 228 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhc-CcccceeeEEEEEecCCc----eEeeeec-------------ceEEEEecC
Confidence 1123444567899999976632 3332 455667788888889887 6555422 222455555
Q ss_pred cccccchhhhhhhhcCCCCCCcceec----CCCCccccceeecCCCCEEEEEecCC
Q 004141 287 VSLYKSEASELELKESSSEDLPVVNL----TESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l----t~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
-+.+ + +.-+-++.+- ...-..+.+..|.|.-.+|+....+.
T Consensus 229 ~~~~--~---------~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG 273 (347)
T KOG0647|consen 229 DPNP--K---------DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDG 273 (347)
T ss_pred CCCc--c---------CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCc
Confidence 3100 0 0000112221 11234578899999888888777663
No 408
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.97 E-value=0.05 Score=54.41 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=49.0
Q ss_pred ceEEEEEccCC-ceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 218 PSLFVININSG-EVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~-~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..||.+|...= .+..+ ..+ ...+.++.|||-|+. +|..+ +++ .|.++..
T Consensus 251 ~nlY~~DmR~l~~p~~v--~~dhvsAV~dVdfsptG~E----fvsgs-------------yDk--sIRIf~~-------- 301 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNV--HKDHVSAVMDVDFSPTGQE----FVSGS-------------YDK--SIRIFPV-------- 301 (433)
T ss_pred ccceehhhhhhcccchh--hcccceeEEEeccCCCcch----hcccc-------------ccc--eEEEeec--------
Confidence 67888886421 12222 122 224668899999998 77766 233 4444544
Q ss_pred hhhhhcCCCCCCcceecC--CCCccccceeecCCCCEEEEEecC
Q 004141 296 ELELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt--~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
..+..+.+. ..-..+..+.||-|.++|+-.+.+
T Consensus 302 ---------~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 302 ---------NHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred ---------CCCcchhhhhHhhhheeeEEEEeccccEEEecCCC
Confidence 334433332 223358899999999988655554
No 409
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.97 E-value=0.48 Score=50.60 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=63.0
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.+.+..|+-||=.++..... .+++++|+.+.....+-. . ...+| +-.+.|.
T Consensus 230 svTal~F~d~gL~~aVGts~-----------G~v~iyDLRa~~pl~~kd-h-----------~~e~p------i~~l~~~ 280 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTST-----------GSVLIYDLRASKPLLVKD-H-----------GYELP------IKKLDWQ 280 (703)
T ss_pred cceEEEecCCceeEEeeccC-----------CcEEEEEcccCCceeecc-c-----------CCccc------eeeeccc
Confidence 47788899888877765543 369999998866533211 1 11222 3455664
Q ss_pred cC--CCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 398 SD--GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 398 ~D--g~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
+. ...| ++. ......|| |..+|+.-.......++....+-++++.+++.-.++.. .+.|+-++.
T Consensus 281 ~~~~q~~v-~S~-Dk~~~kiW--d~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m-~~yyiP~LG 346 (703)
T KOG2321|consen 281 DTDQQNKV-VSM-DKRILKIW--DECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKM-HTYYIPSLG 346 (703)
T ss_pred ccCCCceE-Eec-chHHhhhc--ccccCCceeeccccCCcCceeeecCCceEEEecCCCcc-eeEEccccC
Confidence 43 2223 332 22223344 77777765544444445545566677766655555544 345554554
No 410
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=95.96 E-value=0.69 Score=45.90 Aligned_cols=220 Identities=15% Similarity=0.113 Sum_probs=104.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+..-+|++|++++|...+.. ...||.+. +.+.-...+... .| |....++.|+|...+|+-.+.++..-
T Consensus 12 pitchAwn~drt~iAv~~~~~--evhiy~~~-~~~~w~~~htls-~H-----d~~vtgvdWap~snrIvtcs~drnay-- 80 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNH--EVHIYSML-GADLWEPAHTLS-EH-----DKIVTGVDWAPKSNRIVTCSHDRNAY-- 80 (361)
T ss_pred ceeeeeecCCCceEEeccCCc--eEEEEEec-CCCCceeceehh-hh-----CcceeEEeecCCCCceeEccCCCCcc--
Confidence 366779999999999876542 23344433 333222222211 11 11236899999999998876554321
Q ss_pred CccCC-CCCCCCC--CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee---eccCCCCCCccceEEEecCCCC
Q 004141 180 TFSLG-STKGGSS--DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 180 ~~~~~-~~~~~~~--~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~---~l~~~~~~~~~~~~~wspDg~~ 253 (771)
.|... .....+. ......-..-+.|+|.-..-.++.+...|-|+=.+..+-= +..+.|-...+....|.|++-.
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 12210 0000000 0000000001225555444445555555555555444311 1111343446778899998865
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEE
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
|+..+-+.. | |-...|+-+++..| ....| ..+..=|+ ........+-+....|||+|..|+
T Consensus 161 ----laaGs~D~k--------~--rVfSayIK~Vdekp-ap~pW---gsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 161 ----LAAGSTDGK--------C--RVFSAYIKGVDEKP-APTPW---GSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred ----ecccccCcc--------e--eEEEEeeeccccCC-CCCCC---ccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 554431110 0 11133444442110 00000 00000010 111223345578899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCCC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
|.+.+. .+.+.|....
T Consensus 223 wv~Hds-----------~v~~~da~~p 238 (361)
T KOG1523|consen 223 WVGHDS-----------TVSFVDAAGP 238 (361)
T ss_pred EecCCC-----------ceEEeecCCC
Confidence 999885 2666665543
No 411
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.95 E-value=1.5 Score=43.70 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=65.2
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCc---ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004141 280 CALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
++|-++|+ ...+ +..+..+...+...+.+-+|..||..+... .-|.++|.
T Consensus 159 GqvQi~dL-----------------~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG----------TLIRIFdt 211 (346)
T KOG2111|consen 159 GQVQIVDL-----------------ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG----------TLIRIFDT 211 (346)
T ss_pred ceEEEEEh-----------------hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc----------EEEEEEEc
Confidence 47888888 3333 355666777888999999999999888763 34777888
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
.+|+..+-. ....+ ...+..++||||+..|.++ +..++.+||.+..
T Consensus 212 ~~g~~l~E~----------RRG~d-------~A~iy~iaFSp~~s~Lavs-SdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 212 EDGTLLQEL----------RRGVD-------RADIYCIAFSPNSSWLAVS-SDKGTLHIFSLRD 257 (346)
T ss_pred CCCcEeeee----------ecCCc-------hheEEEEEeCCCccEEEEE-cCCCeEEEEEeec
Confidence 777653211 11000 0134567899999877554 5688889998864
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.92 E-value=1.3 Score=43.87 Aligned_cols=173 Identities=12% Similarity=0.123 Sum_probs=92.9
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
+++.|+||.+.|+-+.+. ..+|.-++.++.-++.++
T Consensus 89 S~LTynp~~rtLFav~n~-------------------------------------------p~~iVElt~~GdlirtiP- 124 (316)
T COG3204 89 SSLTYNPDTRTLFAVTNK-------------------------------------------PAAIVELTKEGDLIRTIP- 124 (316)
T ss_pred cceeeCCCcceEEEecCC-------------------------------------------CceEEEEecCCceEEEec-
Confidence 799999999988776443 367888887777666663
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc------c
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP------V 309 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~------~ 309 (771)
...-.....+.|.-+|+ .+.+. + |..+||.+.++. ++.. .
T Consensus 125 L~g~~DpE~Ieyig~n~-----fvi~d-E-------------R~~~l~~~~vd~---------------~t~~~~~~~~~ 170 (316)
T COG3204 125 LTGFSDPETIEYIGGNQ-----FVIVD-E-------------RDRALYLFTVDA---------------DTTVISAKVQK 170 (316)
T ss_pred ccccCChhHeEEecCCE-----EEEEe-h-------------hcceEEEEEEcC---------------CccEEeccceE
Confidence 33333556677887665 23332 1 233555554421 1111 1
Q ss_pred eecCC--C-CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC-CCCccceeeEEecccccCCCCCcc
Q 004141 310 VNLTE--S-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPG 385 (771)
Q Consensus 310 ~~lt~--~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g 385 (771)
..|-. . +......+|+|....|+|...++ ...||.++...... ..+.... ..-..
T Consensus 171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~---------P~~I~~~~~~~~~l~~~~~~~~------------~~~~~ 229 (316)
T COG3204 171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN---------PIGIFEVTQSPSSLSVHASLDP------------TADRD 229 (316)
T ss_pred EeccccCCCCcCceeeecCCCCceEEEEEccC---------CcEEEEEecCCcccccccccCc------------ccccc
Confidence 11211 1 33467899999999998888775 24577776222111 0011110 00111
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 386 ~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
++-..+.++.+.+....|++.+.. ...|..+|..+.-+..+.
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~E--Sr~l~Evd~~G~~~~~ls 271 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDE--SRRLLEVDLSGEVIELLS 271 (316)
T ss_pred eEeeccccceecCCCCcEEEEecC--CceEEEEecCCCeeeeEE
Confidence 233345566676555555555432 234667777544344443
No 413
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=95.91 E-value=0.024 Score=59.35 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=65.9
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcE---EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~---Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.+|++||.... ...+......+...|+. +..+++.+.... .......+.+.+-++.+.... ..
T Consensus 61 pivlVhG~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~ql~~~V~~~l~~~--ga 126 (336)
T COG1075 61 PIVLVHGLGGG--YGNFLPLDYRLAILGWLTNGVYAFELSGGDGT----------YSLAVRGEQLFAYVDEVLAKT--GA 126 (336)
T ss_pred eEEEEccCcCC--cchhhhhhhhhcchHHHhcccccccccccCCC----------ccccccHHHHHHHHHHHHhhc--CC
Confidence 58999996332 33455555567777777 788887753111 111122455555555555542 34
Q ss_pred CeEEEEEcChhHHHHHHHHhhCC--CceeEEEecCCcc
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLC 651 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p--~~~~~~v~~~p~~ 651 (771)
.++.++||||||..+.+++...+ .+++.++..++.-
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 78999999999999999988877 7888888777643
No 414
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.85 E-value=0.029 Score=55.53 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=63.4
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHH-HHHHHcCCCCCC
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~~ 616 (771)
|+++++|+..+. ...|..+...|... ..|+..+.+|.+... .....++++.+.. +.+.+.. ...
T Consensus 1 ~pLF~fhp~~G~--~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~----------~~~~~l~~~a~~yv~~Ir~~Q--P~G 65 (257)
T COG3319 1 PPLFCFHPAGGS--VLAYAPLAAALGPL-LPVYGLQAPGYGAGE----------QPFASLDDMAAAYVAAIRRVQ--PEG 65 (257)
T ss_pred CCEEEEcCCCCc--HHHHHHHHHHhccC-ceeeccccCcccccc----------cccCCHHHHHHHHHHHHHHhC--CCC
Confidence 568999996554 34566677777665 889999998843211 1122355555443 3333321 245
Q ss_pred eEEEEEcChhHHHHHHHHhhC---CCceeEEEecCCccc
Q 004141 617 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 652 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~p~~~ 652 (771)
.+.|.|+|+||.+|..+|.+- .+.++.++++.++..
T Consensus 66 Py~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 799999999999999888752 335666666655544
No 415
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.85 E-value=0.11 Score=57.09 Aligned_cols=142 Identities=11% Similarity=0.046 Sum_probs=92.2
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..+-.||+...+-+... .....++.++.|||--.. ..+...+ .+.|-.+|+-
T Consensus 154 QDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~----~F~s~~d--------------sG~lqlWDlR------- 207 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGN----KFASIHD--------------SGYLQLWDLR------- 207 (839)
T ss_pred CCceEEEEeeecccccccc-cccchhhhceeeccCCCc----eEEEecC--------------CceEEEeecc-------
Confidence 4467888998777655552 223447889999996543 3333322 2245566651
Q ss_pred hhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 296 ELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
... -..+++.+.+.+....|+|++.+||...++ ..+.+||+.++....+. ++..
T Consensus 208 ---------qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-----------K~vkiWd~t~~~~~~~~-----tInT 262 (839)
T KOG0269|consen 208 ---------QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-----------KMVKIWDMTDSRAKPKH-----TINT 262 (839)
T ss_pred ---------CchhHHHHhhcccCceEEEeecCCCceeeecCCC-----------ccEEEEeccCCCcccee-----EEee
Confidence 233 347789999999999999999999877744 35888888776654321 1111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
+ ..+..+.|-|+-.+.+.+.+-.+...++.+|+.
T Consensus 263 i-------------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 263 I-------------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred c-------------ceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 1 124577899988877777765566667777764
No 416
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.82 E-value=1 Score=47.27 Aligned_cols=139 Identities=13% Similarity=0.139 Sum_probs=82.1
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..+|.+..+.++....-.+.+..-.+.-+.+||-.+. ++.++- ..+.+.+||+
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~----lL~~as--------------d~G~VtlwDv--------- 194 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF----LLSIAS--------------DKGAVTLWDV--------- 194 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeecccccce----eeEeec--------------cCCeEEEEec---------
Confidence 4577777777764322211333445667789998887 766552 2235667776
Q ss_pred hhhhcCCCCCCc--ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 297 LELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 297 ~~~~~~~~~~~~--~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
++.. ...+..+...+....|||-...|+..-.- ..+|+++|...... +...
T Consensus 195 --------~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~----------Dkki~~yD~~s~~s---~~~l------ 247 (673)
T KOG4378|consen 195 --------QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY----------DKKINIYDIRSQAS---TDRL------ 247 (673)
T ss_pred --------cCCCcccchhhhccCCcCcceecCCccceEEEecc----------cceEEEeecccccc---ccee------
Confidence 3332 22333455567889999987655433311 35799999765332 1111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
.|..-+..++|+++|.+|+.-. .+.+|+.+|+.+.
T Consensus 248 -----------~y~~Plstvaf~~~G~~L~aG~---s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 248 -----------TYSHPLSTVAFSECGTYLCAGN---SKGELIAYDMRST 282 (673)
T ss_pred -----------eecCCcceeeecCCceEEEeec---CCceEEEEecccC
Confidence 1222356889999998665433 3557888888543
No 417
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.82 E-value=2.1 Score=42.31 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=36.8
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004141 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 399 Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~ 469 (771)
++ .+++... .+. ++.+|+.+|+.. ...... ........+++.|++... -..++..++.+++
T Consensus 173 ~~-~v~~~~~-~g~--~~~~d~~tg~~~-w~~~~~-~~~~~~~~~~~~l~~~~~----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 173 DG-RVYVSSG-DGR--VVAVDLATGEKL-WSKPIS-GIYSLPSVDGGTLYVTSS----DGRLYALDLKTGK 233 (238)
T ss_dssp TT-EEEEECC-TSS--EEEEETTTTEEE-EEECSS--ECECEECCCTEEEEEET----TTEEEEEETTTTE
T ss_pred CC-EEEEEcC-CCe--EEEEECCCCCEE-EEecCC-CccCCceeeCCEEEEEeC----CCEEEEEECCCCC
Confidence 44 5655543 332 677799999855 333322 122235678888877662 3778998887654
No 418
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.81 E-value=0.4 Score=50.88 Aligned_cols=122 Identities=19% Similarity=0.230 Sum_probs=74.7
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEE-EEECCCCCCCCChhhhhcCCCCccccc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSL-LIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V-v~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+.++- +.+-| ++-+.|+.|++-|--.. ..|.. .-.|...|... +.-|.|-.+| ++. .|..+
T Consensus 275 reEi~-yYFnP----GD~KPPL~VYFSGyR~a---EGFEg-y~MMk~Lg~PfLL~~DpRleGG---aFY------lGs~e 336 (511)
T TIGR03712 275 RQEFI-YYFNP----GDFKPPLNVYFSGYRPA---EGFEG-YFMMKRLGAPFLLIGDPRLEGG---AFY------LGSDE 336 (511)
T ss_pred CCeeE-EecCC----cCCCCCeEEeeccCccc---Ccchh-HHHHHhcCCCeEEeeccccccc---eee------eCcHH
Confidence 44453 34445 45567999999983322 22321 12334556654 5567776332 221 22222
Q ss_pred h-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC
Q 004141 597 V-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 659 (771)
Q Consensus 597 ~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~ 659 (771)
. +.+...|+.-.+.-..+.+.+.|.|.|||.+-|+.++++. ...|+|+.-|.+++-.+..-
T Consensus 337 yE~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~NLGtiA~n 398 (511)
T TIGR03712 337 YEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVNLGTIASR 398 (511)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccchhhhhcc
Confidence 2 2344555544444447888999999999999999999864 35688999999988766543
No 419
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.81 E-value=0.044 Score=57.90 Aligned_cols=136 Identities=18% Similarity=0.222 Sum_probs=87.3
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcC-CCCCCCCC--cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHG-GPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 588 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HG-g~~~~~~~--~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~ 588 (771)
.+.+..+....=++|.+..+. ....|+.+++-| |+....+. .-........+.|..|+..++|- ||.+..-..
T Consensus 62 hF~~~~~~~~Qq~~y~n~~~~-~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~ 137 (514)
T KOG2182|consen 62 HFDSSNGKFFQQRFYNNNQWA-KPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGD 137 (514)
T ss_pred hhhcchhhhhhhheeeccccc-cCCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCC
Confidence 343444444444555555432 334588888877 33321111 11234555678899999999997 665432111
Q ss_pred CC------CccccchhhHHHHHHHHHHcCC-CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 589 PG------KVGSQDVNDVLTAIDHVIDMGL-ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 589 ~~------~~~~~~~~D~~~~i~~l~~~~~-~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
.. -...+.++|+..+|+.+..+.. .+..+++.+|.|+-|.+++++=.++|+++.+.|+.++.+
T Consensus 138 ~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 138 LSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred CcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 11 1123457788888888877643 455699999999999999999999999998888776544
No 420
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.75 E-value=4.2 Score=47.98 Aligned_cols=85 Identities=8% Similarity=0.121 Sum_probs=50.7
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|.|||.+ |...... .+.......++|-|.|.. |+.+... ...+.|..+.-
T Consensus 222 RkirV~drE-g~Lns~s-e~~~~l~~~LsWkPsgs~----iA~iq~~------------~sd~~IvffEr---------- 273 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTS-EPVEGLQHSLSWKPSGSL----IAAIQCK------------TSDSDIVFFER---------- 273 (1265)
T ss_pred eeEEEeccc-chhhccc-CcccccccceeecCCCCe----Eeeeeec------------CCCCcEEEEec----------
Confidence 578888877 5443331 344445678899999987 7766522 22234555543
Q ss_pred hhhcCCCCCCcc----eecCCCCccccceeecCCCCEEEEEecC
Q 004141 298 ELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 298 ~~~~~~~~~~~~----~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+|-+. .+.......+....|+.++..|+.....
T Consensus 274 -------NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 274 -------NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred -------CCccccccccCCcccccchheeeecCCCCceeeeecc
Confidence 22211 1122223337889999999988876544
No 421
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=95.68 E-value=0.14 Score=55.75 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=66.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
....+-+|-...+||-. .+-+.+++ +......++..... .+.+++||+||+++|-.-..
T Consensus 40 ~~gLa~~p~Sgl~aYpA-----GCvVVlfn~~~~tQ~hlvnssRk---------~~t~vAfS~~GryvatGEcG------ 99 (1080)
T KOG1408|consen 40 ANGLASVPCSGLCAYPA-----GCVVVLFNVDSCTQSHLVNSSRK---------PLTCVAFSQNGRYVATGECG------ 99 (1080)
T ss_pred CCcccccccccceeecc-----CcEEEEEcccccchhheecccCc---------ceeEEEEcCCCcEEEecccC------
Confidence 34456677777788752 23344444 33333344443222 24799999999988773111
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
..+.+-||+++.-. +-.+ ......+.-++|||.+++ |
T Consensus 100 ------------------------------------~~pa~kVw~la~h~vVAEf--vdHKY~vtcvaFsp~~ky----v 137 (1080)
T KOG1408|consen 100 ------------------------------------RTPASKVWSLAFHGVVAEF--VDHKYNVTCVAFSPGNKY----V 137 (1080)
T ss_pred ------------------------------------CCccceeeeeccccchhhh--hhccccceeeeecCCCcE----E
Confidence 34677889987654 3333 456678889999999998 9
Q ss_pred EEEeecCc
Q 004141 259 VFVGWSSE 266 (771)
Q Consensus 259 ~~~~~~~~ 266 (771)
+-++..++
T Consensus 138 vSVGsQHD 145 (1080)
T KOG1408|consen 138 VSVGSQHD 145 (1080)
T ss_pred Eeeccccc
Confidence 98875544
No 422
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.62 E-value=0.66 Score=49.65 Aligned_cols=113 Identities=10% Similarity=-0.031 Sum_probs=64.1
Q ss_pred CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc--
Q 004141 240 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-- 317 (771)
Q Consensus 240 ~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-- 317 (771)
..+..+.|+-||-. ++..+ ..+++|++|| -+.++-.+-.+..
T Consensus 229 ~svTal~F~d~gL~----~aVGt---------------s~G~v~iyDL-----------------Ra~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 229 PSVTALKFRDDGLH----VAVGT---------------STGSVLIYDL-----------------RASKPLLVKDHGYEL 272 (703)
T ss_pred CcceEEEecCCcee----EEeec---------------cCCcEEEEEc-----------------ccCCceeecccCCcc
Confidence 35778889988876 66544 4458999998 4444433333332
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.+....|-+.+..=..++.+. .-|.+||-.+|+.....+ +...+..+|+-
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk----------~~~kiWd~~~Gk~~asiE--------------------pt~~lND~C~~ 322 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDK----------RILKIWDECTGKPMASIE--------------------PTSDLNDFCFV 322 (703)
T ss_pred ceeeecccccCCCceEEecch----------HHhhhcccccCCceeecc--------------------ccCCcCceeee
Confidence 245556644422222233332 235667766666422111 11235677888
Q ss_pred cCCCEEEEEeeeCCeeEEEEEE
Q 004141 398 SDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 398 ~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
|++. ++|.+........|.|.
T Consensus 323 p~sG-m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 323 PGSG-MFFTANESSKMHTYYIP 343 (703)
T ss_pred cCCc-eEEEecCCCcceeEEcc
Confidence 8887 66777767666666654
No 423
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=0.45 Score=53.51 Aligned_cols=233 Identities=11% Similarity=-0.004 Sum_probs=138.4
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+++|.|.--+|+..-..+..+ .|+........++..+......+.|-+..---+++..+..|-||+....+..--.
T Consensus 13 KglsFHP~rPwILtslHsG~IQ--lWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL- 89 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQ--LWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL- 89 (1202)
T ss_pred cceecCCCCCEEEEeecCceee--eehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-
Confidence 4889999999998876555443 4544344444455555555555566555333334445678888888765542220
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE 314 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~ 314 (771)
...-..+....|.+.=-+ |+-.+ .+..|.+++. .+.. .-.||.
T Consensus 90 ~GHlDYVRt~~FHheyPW----IlSAS---------------DDQTIrIWNw-----------------qsr~~iavltG 133 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPW----ILSAS---------------DDQTIRIWNW-----------------QSRKCIAVLTG 133 (1202)
T ss_pred ccccceeEEeeccCCCce----EEEcc---------------CCCeEEEEec-----------------cCCceEEEEec
Confidence 233346777888888777 77665 3346777776 5554 567889
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc------------------eeeEEeccc
Q 004141 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK------------------IVDVIPVVQ 376 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~------------------~~~~~~~~~ 376 (771)
++..+...+|.|....|+-.|-+. .+.+||..+=..+....+ .+.+++.+-
T Consensus 134 HnHYVMcAqFhptEDlIVSaSLDQ-----------TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTEDLIVSASLDQ-----------TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred CceEEEeeccCCccceEEEecccc-----------eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 999999999999888888888765 367777665443333222 111222211
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE--ecCCCCCceeeEEeecCCEEE
Q 004141 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR--ITPAESNFSWSLLTLDGDNII 448 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~--l~~~~~~~~~~~~s~dg~~l~ 448 (771)
.. ++.++.-.+|.|--- |+++..++....||+++.. ...+. .......++...|.|..+.|+
T Consensus 203 EG--------HDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnet-KaWEvDtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 203 EG--------HDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET-KAWEVDTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred cc--------cccccceEEecCCcc-eEEecCCcceeeEEEeccc-cceeehhhhcccCCcceEEecCccceeE
Confidence 11 223455556666544 6677777777889998853 32221 112222445555665555443
No 424
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=95.59 E-value=2.1 Score=48.41 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=40.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
..+...+||+||.+|+- ++...++.+| .+...++... +..-+ ..+.||||+..-+.+.++
T Consensus 252 ~~V~~L~fS~~G~~LlS-----GG~E~VLv~Wq~~T~~kqfLPRLgs~I----------~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLS-----GGREGVLVLWQLETGKKQFLPRLGSPI----------LHIVVSPDSDLYSLVLED 313 (792)
T ss_pred cccceeEEecCCceEee-----cccceEEEEEeecCCCcccccccCCee----------EEEEEcCCCCeEEEEecC
Confidence 45788999999999864 3566789999 3333344433 23222 689999999987776543
No 425
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=95.57 E-value=0.86 Score=44.61 Aligned_cols=170 Identities=10% Similarity=0.079 Sum_probs=88.6
Q ss_pred ceEEEEEccCCc----eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004141 218 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~~----~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
..--+||+++|. -++| +..+..+..++|+-+|.. +|++- ..++.+..+||
T Consensus 173 TTCTiWdie~~~~~~vkTQL--IAHDKEV~DIaf~~~s~~-----~FASv-------------gaDGSvRmFDL------ 226 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQL--IAHDKEVYDIAFLKGSRD-----VFASV-------------GADGSVRMFDL------ 226 (364)
T ss_pred CeEEEEEEeeccccceeeEE--EecCcceeEEEeccCccc-----eEEEe-------------cCCCcEEEEEe------
Confidence 456788988873 3556 677888999999997775 44441 13345666666
Q ss_pred hhhhhhhcCCCCCCcc-eecCCCCc---cccceeecCC-CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004141 294 ASELELKESSSEDLPV-VNLTESIS---SAFFPRFSPD-GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~-~~lt~~~~---~~~~p~~SpD-G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
..-+. +-+.++.. .....+|++. =+++|....+ ..++.++|+.--..-.
T Consensus 227 -----------R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d----------S~~V~iLDiR~P~tpv----- 280 (364)
T KOG0290|consen 227 -----------RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD----------SNKVVILDIRVPCTPV----- 280 (364)
T ss_pred -----------cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC----------CceEEEEEecCCCcce-----
Confidence 22222 11222211 1223344442 2334433332 3456666654322210
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC---cEEEec-CCCCCceeeEEee-c
Q 004141 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG---ELLRIT-PAESNFSWSLLTL-D 443 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg---~~~~l~-~~~~~~~~~~~s~-d 443 (771)
..+- .+...+..++|.|.++.-+.+...+...-||-++..-+ +--.+. ...+.+....|++ .
T Consensus 281 ---a~L~----------~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 281 ---ARLR----------NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQ 347 (364)
T ss_pred ---ehhh----------cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccC
Confidence 0000 02235678899999988888877666666775543222 100111 1122355566764 6
Q ss_pred CCEEEEEEe
Q 004141 444 GDNIIAVSS 452 (771)
Q Consensus 444 g~~l~~~~~ 452 (771)
++++.++..
T Consensus 348 ~Dwiai~~~ 356 (364)
T KOG0290|consen 348 PDWIAICFG 356 (364)
T ss_pred CCEEEEEec
Confidence 677766553
No 426
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=95.45 E-value=0.12 Score=55.57 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=81.4
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHH---------H------HCCcEEEEECCCCCCCC
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL---------S------SVGYSLLIVNYRGSLGF 580 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~l---------a------~~G~~Vv~~d~rG~~~~ 580 (771)
..+..+..|++.... .....|+||++-|||+.+.........-.| . ..-..++-.|.+-..||
T Consensus 54 ~~~~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~PvGvGF 131 (454)
T KOG1282|consen 54 SEGRQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQPVGVGF 131 (454)
T ss_pred CCCceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEecCCcCCc
Confidence 357789999987652 445679999999999876432211111111 0 11145677776644445
Q ss_pred ChhhhhcCCCCccccchhhHHHHH-HHHHHcCCCCCCeEEEEEcChhHHHHHHHHhh----C------CCceeEEEecCC
Q 004141 581 GEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAARNP 649 (771)
Q Consensus 581 g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~~~v~~~p 649 (771)
.-+-.......-.....+|...++ +|+.+.+......+.|.|.|++|..+-.+|.. . .-.++++++.+|
T Consensus 132 SYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg 211 (454)
T KOG1282|consen 132 SYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNG 211 (454)
T ss_pred cccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecCc
Confidence 332211111111112356666665 56666666667889999999999766665542 2 124789999999
Q ss_pred ccch
Q 004141 650 LCNL 653 (771)
Q Consensus 650 ~~~~ 653 (771)
+.+.
T Consensus 212 ~td~ 215 (454)
T KOG1282|consen 212 LTDP 215 (454)
T ss_pred ccCc
Confidence 8764
No 427
>KOG4328 consensus WD40 protein [Function unknown]
Probab=95.40 E-value=0.32 Score=50.44 Aligned_cols=170 Identities=13% Similarity=0.078 Sum_probs=100.6
Q ss_pred cCceEEEEEccCCc---eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 216 RQPSLFVININSGE---VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 216 ~~~~l~v~d~~~~~---~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
+..+|-+||+.+.+ .....+++....++...|+|-... -+|.+. .++.|...|+
T Consensus 208 K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~ssS--------------yDGtiR~~D~----- 264 (498)
T KOG4328|consen 208 KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS----QIYSSS--------------YDGTIRLQDF----- 264 (498)
T ss_pred CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh----heeeec--------------cCceeeeeee-----
Confidence 44788899985332 222223777778899999998766 555441 3346888888
Q ss_pred hhhhhhhhcCCCCCCcceec-CC--CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC--CCccc
Q 004141 293 EASELELKESSSEDLPVVNL-TE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF--SSLEK 367 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~l-t~--~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~~~~~ 367 (771)
+++....+ +. ......+..|+.+...++|..+-. .+.++|+.+++.. .+..
T Consensus 265 ------------~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-----------~f~~iD~R~~~s~~~~~~l- 320 (498)
T KOG4328|consen 265 ------------EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-----------NFNVIDLRTDGSEYENLRL- 320 (498)
T ss_pred ------------cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-----------ceEEEEeecCCccchhhhh-
Confidence 44433222 22 233456677888877777776542 3556776665541 1110
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-Ee--cCCCCCceeeEEeecC
Q 004141 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RI--TPAESNFSWSLLTLDG 444 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l--~~~~~~~~~~~~s~dg 444 (771)
...-+.++++.|--.+++.+++.++...||-+.--.++.. .| ....-.+...-|||.+
T Consensus 321 -------------------h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 321 -------------------HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred -------------------hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 1112456677777777888887777777885432223322 12 1222245667899999
Q ss_pred CEEEEEE
Q 004141 445 DNIIAVS 451 (771)
Q Consensus 445 ~~l~~~~ 451 (771)
..|+.++
T Consensus 382 gtl~TT~ 388 (498)
T KOG4328|consen 382 GTLLTTC 388 (498)
T ss_pred CceEeec
Confidence 8876655
No 428
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=95.21 E-value=0.15 Score=55.21 Aligned_cols=132 Identities=20% Similarity=0.272 Sum_probs=75.8
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHH--------------HH------HHCCcEEEEECCCCC
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLA--------------FL------SSVGYSLLIVNYRGS 577 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~--------------~l------a~~G~~Vv~~d~rG~ 577 (771)
+..+..|++...+ .....|+|+++-|||+.+.......... .+ -.+-..++.+|.+-.
T Consensus 49 ~~~lfy~f~es~~--~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anllfiDqPvG 126 (433)
T PLN03016 49 NVQFFYYFIKSEN--NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMANIIFLDQPVG 126 (433)
T ss_pred CeEEEEEEEecCC--CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcCcEEEecCCCC
Confidence 4567888887653 3457899999999988643111000000 01 012267888887654
Q ss_pred CCCChhhhhcCCCCccc-cchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHhh----C------CCceeEEE
Q 004141 578 LGFGEEALQSLPGKVGS-QDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAA 645 (771)
Q Consensus 578 ~~~g~~~~~~~~~~~~~-~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~~~v 645 (771)
.||...... ...... ..++++..++....+ .+.....++.|+|.|+||..+-.+|.. . +-.+++++
T Consensus 127 tGfSy~~~~--~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~ 204 (433)
T PLN03016 127 SGFSYSKTP--IDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYM 204 (433)
T ss_pred CCccCCCCC--CCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeE
Confidence 555432111 111111 123566666654433 344456789999999999877666542 1 12478999
Q ss_pred ecCCccch
Q 004141 646 ARNPLCNL 653 (771)
Q Consensus 646 ~~~p~~~~ 653 (771)
+.+|..+.
T Consensus 205 iGNg~t~~ 212 (433)
T PLN03016 205 LGNPVTYM 212 (433)
T ss_pred ecCCCcCc
Confidence 99987654
No 429
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=95.19 E-value=0.03 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.5
Q ss_pred CCeEEEEEcChhHHHHHHHHhh
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
..+|.++|||+||.++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3589999999999999877653
No 430
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.18 E-value=3.3 Score=41.11 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=36.9
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCC-cEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG-ELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 391 ~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg-~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
+..++|+|=-.++ ++...+|-..+| |+.+. ++.++..-...++...|+.||..|+...+
T Consensus 235 VNai~Fhp~~~tf-aTgGsDG~V~~W--d~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 235 VNAIAFHPIHGTF-ATGGSDGIVNIW--DLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eceeEeccccceE-EecCCCceEEEc--cCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 4567788775544 444445555555 55443 35555555445777899999998877654
No 431
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=95.15 E-value=0.034 Score=54.13 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC----CceeEEEecCC
Q 004141 601 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARNP 649 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p----~~~~~~v~~~p 649 (771)
..|++++.+...-.+++|.+.|||.||.+|.+++...+ +++..+....+
T Consensus 69 ~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 45555554421112446999999999999999988743 45666664443
No 432
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=0.066 Score=59.42 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=31.8
Q ss_pred chhhHHHHHHHHHHcC----CCC---CCeEEEEEcChhHHHHHHHHhhCCCceeE
Q 004141 596 DVNDVLTAIDHVIDMG----LAN---PSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~----~~d---~~ri~l~G~S~GG~~a~~~a~~~p~~~~~ 643 (771)
..+=+.+||+++.+.. ..+ |..|.++||||||.+|..++. +|..+.+
T Consensus 155 QtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~t-lkn~~~~ 208 (973)
T KOG3724|consen 155 QTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLT-LKNEVQG 208 (973)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHh-hhhhccc
Confidence 3555667777776532 223 677999999999999977665 3544443
No 433
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=95.07 E-value=2.8 Score=42.76 Aligned_cols=99 Identities=13% Similarity=0.167 Sum_probs=64.7
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
-+..|.+||+.++....- .........+..+|..+. |+..+ .. .+|.++|.-.
T Consensus 279 wDHTIk~WDletg~~~~~--~~~~ksl~~i~~~~~~~L----l~~gs-------------sd--r~irl~DPR~------ 331 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKST--LTTNKSLNCISYSPLSKL----LASGS-------------SD--RHIRLWDPRT------ 331 (423)
T ss_pred ccceEEEEEeecccceee--eecCcceeEeecccccce----eeecC-------------CC--CceeecCCCC------
Confidence 457899999998876544 344456777889998886 66544 22 2677787521
Q ss_pred hhhhhcCCCCCCc--ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 296 ELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 296 ~~~~~~~~~~~~~--~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.++. ..++..+..-+.+..|||-..++ |++... .+.+.+||+.+..
T Consensus 332 ---------~~gs~v~~s~~gH~nwVssvkwsp~~~~~-~~S~S~---------D~t~klWDvRS~k 379 (423)
T KOG0313|consen 332 ---------GDGSVVSQSLIGHKNWVSSVKWSPTNEFQ-LVSGSY---------DNTVKLWDVRSTK 379 (423)
T ss_pred ---------CCCceeEEeeecchhhhhheecCCCCceE-EEEEec---------CCeEEEEEeccCC
Confidence 2233 34567777789999999987765 343221 2457778876644
No 434
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.93 E-value=1.6 Score=51.14 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=34.3
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
+....|--|+..|.++...+ .+++++ ......-+..+..++ ...+||||++.++++....
T Consensus 71 i~s~~fl~d~~~i~v~~~~G----~iilvd~et~~~eivg~vd~GI----------~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALG----DIILVDPETLELEIVGNVDNGI----------SAASWSPDEELLALITGRQ 131 (1265)
T ss_pred eEEEEEecccceEEEEecCC----cEEEEcccccceeeeeeccCce----------EEEeecCCCcEEEEEeCCc
Confidence 44555556666665554332 244444 222222223333444 6999999999999987654
No 435
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.88 E-value=5.7 Score=41.56 Aligned_cols=98 Identities=20% Similarity=0.155 Sum_probs=52.7
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCc-----cccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCC
Q 004141 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAH-----SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~-----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
+....+.+++|||++|+.+....-...|.. ....+|+.+|..+.+.. ... -..++-..+... ....
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~--~~y~ld~~~~~~-----~~~~ 216 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAE--YAYPLDPPPTAP-----GDNG 216 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc--ceE--EEEeCCcccccc-----CCCC
Confidence 345788999999998766655431111111 11256788887663311 000 011111100000 1124
Q ss_pred CCCCccccCCCEEEEEee----eCCeeEEEEEECCC
Q 004141 391 ILSNPWLSDGCTMLLSSI----WGSSQVIISVNVSS 422 (771)
Q Consensus 391 ~~~~~~s~Dg~~l~~~~~----~~~~~~l~~~d~~t 422 (771)
+..+.+.+|++.|++-.. .....+||.+++..
T Consensus 217 isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 217 ISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred ceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 667889999997766655 23456899999754
No 436
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=94.75 E-value=0.61 Score=52.39 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=59.9
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC-cceEE--EecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS-QLEKE--FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~-~~~~~--~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
....++||.|+.+|-.-.. | + +.+| +-+ ..... +.+. -.|..| .+++||+||.+|+-..
T Consensus 208 ~t~~~~spn~~~~Aa~d~d--G--r-I~vw~d~~~~~~~~t~t~lH-WH~~~V------~~L~fS~~G~~LlSGG----- 270 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD--G--R-ILVWRDFGSSDDSETCTLLH-WHHDEV------NSLSFSSDGAYLLSGG----- 270 (792)
T ss_pred ceeEEeccccceEEEeccC--C--c-EEEEeccccccccccceEEE-eccccc------ceeEEecCCceEeecc-----
Confidence 4568899999999864322 2 2 5566 433 11111 1111 111222 6999999999887632
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEG 253 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~ 253 (771)
....|.+|.+++++.+-| |. ...+..+.||||+..
T Consensus 271 ---------------------------------------~E~VLv~Wq~~T~~kqfL---PRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 271 ---------------------------------------REGVLVLWQLETGKKQFL---PRLGSPILHIVVSPDSDL 306 (792)
T ss_pred ---------------------------------------cceEEEEEeecCCCcccc---cccCCeeEEEEEcCCCCe
Confidence 337899999999994444 43 346788999999996
No 437
>PLN02209 serine carboxypeptidase
Probab=94.67 E-value=0.29 Score=53.04 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=76.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHH--------------HHH------HHCCcEEEEECCCC
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL--------------AFL------SSVGYSLLIVNYRG 576 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~--------------~~l------a~~G~~Vv~~d~rG 576 (771)
.+..+..|++.... .....|+|+++-|||+.+......... ..+ -.+-..++.+|.+-
T Consensus 50 ~~~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anllfiDqPv 127 (437)
T PLN02209 50 ENVQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTANIIFLDQPV 127 (437)
T ss_pred CCeEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcCcEEEecCCC
Confidence 35567777776553 345679999999998765321110000 001 01225788888765
Q ss_pred CCCCChhhhhcCCCCccccchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHhh----C------CCceeEEE
Q 004141 577 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAA 645 (771)
Q Consensus 577 ~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~~~v 645 (771)
..||......... .....+.+|+..+++...+ .+.....++.|+|.|+||..+-.+|.. . +-.+++++
T Consensus 128 GtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~ 206 (437)
T PLN02209 128 GSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYV 206 (437)
T ss_pred CCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeEE
Confidence 5555432111010 1111235666666654444 344455689999999999877666542 1 12468899
Q ss_pred ecCCccch
Q 004141 646 ARNPLCNL 653 (771)
Q Consensus 646 ~~~p~~~~ 653 (771)
+.+|..+.
T Consensus 207 igng~td~ 214 (437)
T PLN02209 207 LGNPITHI 214 (437)
T ss_pred ecCcccCh
Confidence 99987764
No 438
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.61 E-value=0.18 Score=52.14 Aligned_cols=135 Identities=15% Similarity=0.090 Sum_probs=74.3
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec--C
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL--T 313 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l--t 313 (771)
-.....+..++.|||+++ ++-.+ ..+.|..+++..+.+..+.++.......-+..... .
T Consensus 139 ~~H~~s~~~vals~d~~~----~fsas---------------k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~ 199 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKR----VFSAS---------------KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRK 199 (479)
T ss_pred ccccCcceEEEeeccccc----eeecC---------------CCcceeeeehhcCcccccccccchhhhhccCCCCcccc
Confidence 345557788999999996 55444 22355555543222222222211000001111111 2
Q ss_pred CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004141 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
.+...+...+.|+||++||+...+ ..+.+|+..+.+..+..++... .+.+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d-----------~~v~Iw~~~t~ehv~~~~ghr~-------------------~V~~ 249 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRD-----------RHVQIWDCDTLEHVKVFKGHRG-------------------AVSS 249 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCC-----------ceEEEecCcccchhhccccccc-------------------ceee
Confidence 344457788999999999986654 3577899888777554333221 2445
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 394 NPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 394 ~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
++|-..-..| |+.+.+....+|.++.
T Consensus 250 L~fr~gt~~l-ys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 250 LAFRKGTSEL-YSASADRSVKVWSIDQ 275 (479)
T ss_pred eeeecCccce-eeeecCCceEEEehhH
Confidence 5665444445 4555566677776653
No 439
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.53 E-value=2.4 Score=46.73 Aligned_cols=57 Identities=9% Similarity=0.093 Sum_probs=33.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEE
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
.+.+.+|.-||++|+.+..++. +++=.-+|+ |+..-. .+. -.....||||.+.++|.
T Consensus 117 vV~SmsWn~dG~kIcIvYeDGa----vIVGsvdGN--RIwgKeLkg~--------~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVYEDGA----VIVGSVDGN--RIWGKELKGQ--------LLAHVLWSEDLEQALFK 174 (1189)
T ss_pred EEEEEEEcCCCcEEEEEEccCC----EEEEeeccc--eecchhcchh--------eccceeecccHHHHHhh
Confidence 3678899999999999877541 222222221 121110 000 01367799999988885
No 440
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.52 E-value=5.7 Score=39.65 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=50.5
Q ss_pred CceEEEEEccCCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 217 QPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 217 ~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
+.+|.+|+...=+. ..+ -+....+..++..|.|| |+.+- .++..|..++|
T Consensus 106 DG~i~iw~~~~W~~~~sl--K~H~~~Vt~lsiHPS~K-----LALsV--------------g~D~~lr~WNL-------- 156 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSL--KAHKGQVTDLSIHPSGK-----LALSV--------------GGDQVLRTWNL-------- 156 (362)
T ss_pred CCcEEEEEcCCeEEeeee--cccccccceeEecCCCc-----eEEEE--------------cCCceeeeehh--------
Confidence 36788888654322 223 23344588999999999 55543 13346777777
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
-.|..-.+..-......+.|+|.|.+++....+
T Consensus 157 ---------V~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 157 ---------VRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred ---------hcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence 444332222222334558999999988776654
No 441
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.48 E-value=3.9 Score=40.64 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=40.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLI 167 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~l 167 (771)
..++..+|+||-+.|..+-+ +..++.++...|+..+.+.+.. .+ ....+.|.-+|+++
T Consensus 86 ~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g-~~-------DpE~Ieyig~n~fv 143 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTG-FS-------DPETIEYIGGNQFV 143 (316)
T ss_pred ccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccc-cC-------ChhHeEEecCCEEE
Confidence 45889999999999955543 5578999998888877776643 21 11477787777644
No 442
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.48 E-value=2.4 Score=41.44 Aligned_cols=176 Identities=17% Similarity=0.129 Sum_probs=103.2
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
....|-.+|..+|++..+. +........+..-|||.. .+.- ....|-++|-
T Consensus 81 g~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~-----Witd---------------~~~aI~R~dp-------- 131 (353)
T COG4257 81 GTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSA-----WITD---------------TGLAIGRLDP-------- 131 (353)
T ss_pred ccccceecCCCCCceEEEe-cCCCCCCceEEECCCCCe-----eEec---------------CcceeEEecC--------
Confidence 3467888999999998884 455556777788899874 3321 1115777775
Q ss_pred hhhhhcCCCCCCcceecC--C--CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 296 ELELKESSSEDLPVVNLT--E--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt--~--~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
++.+.++.+ . .......++|.++|. |.|+.+. |.+. ++|-.++ +
T Consensus 132 ---------kt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~-----G~yG------rLdPa~~-----------~ 179 (353)
T COG4257 132 ---------KTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQI-----GAYG------RLDPARN-----------V 179 (353)
T ss_pred ---------cccceEEeecccccCCCcccceeeCCCcc-EEEeecc-----ccce------ecCcccC-----------c
Confidence 566554433 2 234567899999998 7888775 3211 2222221 1
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeeEEeecCCEEEE
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIA 449 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~dg~~l~~ 449 (771)
+.++..+.. ...+.+|-.|||. ++|++-.+ ..|.+||..++..+.+..... ..+...++..-+.+..
T Consensus 180 i~vfpaPqG--------~gpyGi~atpdGs-vwyaslag--naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wi 248 (353)
T COG4257 180 ISVFPAPQG--------GGPYGICATPDGS-VWYASLAG--NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWI 248 (353)
T ss_pred eeeeccCCC--------CCCcceEECCCCc-EEEEeccc--cceEEcccccCCcceecCCCcccccccccccCccCcEEE
Confidence 222222111 1346778899997 66665433 358888998887777765443 2233344443344554
Q ss_pred EEeCCCCCCeEEEEEec
Q 004141 450 VSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 450 ~~~~~~~p~~l~~~~~~ 466 (771)
+. -...++++++..
T Consensus 249 tt---wg~g~l~rfdPs 262 (353)
T COG4257 249 TT---WGTGSLHRFDPS 262 (353)
T ss_pred ec---cCCceeeEeCcc
Confidence 42 233457776643
No 443
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=94.46 E-value=0.62 Score=45.60 Aligned_cols=156 Identities=12% Similarity=0.142 Sum_probs=96.7
Q ss_pred CCccCceEEEEEccCCceee---cc-----------CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccC
Q 004141 213 AGKRQPSLFVININSGEVQA---VK-----------GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 278 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~---l~-----------~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~ 278 (771)
.+..+..|.+||++...-.. +. .......+..+.|-|-... +..++. .
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG----mFtssS--------------F 122 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG----MFTSSS--------------F 122 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc----eeeccc--------------c
Confidence 34467889999987543111 10 1122346778889887666 555441 2
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC--EEEEEecCCCCCCCCccccccceeeec
Q 004141 279 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK--FLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~--~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
+..|-++|. ++-+......-++.+.+-+|||=.. .|+-...+ ..++.+.|+
T Consensus 123 DhtlKVWDt-----------------nTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr----------~~~VrLCDi 175 (397)
T KOG4283|consen 123 DHTLKVWDT-----------------NTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTR----------DVQVRLCDI 175 (397)
T ss_pred cceEEEeec-----------------ccceeeEEeecCceeehhhcChhhhcceEEEEecC----------CCcEEEEec
Confidence 225666775 4444333333445566777887554 23333333 257888899
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 432 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~ 432 (771)
++|...-...+.. ..+-.+.|||-...++++.+.++..+||-|...+|-...+....
T Consensus 176 ~SGs~sH~LsGHr-------------------~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 176 ASGSFSHTLSGHR-------------------DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred cCCcceeeecccc-------------------CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 8887543332221 13456789999999999999999999999888877776665433
No 444
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=94.40 E-value=0.3 Score=53.38 Aligned_cols=87 Identities=10% Similarity=0.109 Sum_probs=54.7
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..+.++|++.-+...|- .........++||++|++ ++..- .+ .+....+|.+.
T Consensus 58 CvVVlfn~~~~tQ~hlv-nssRk~~t~vAfS~~Gry----vatGE--cG---------~~pa~kVw~la----------- 110 (1080)
T KOG1408|consen 58 CVVVLFNVDSCTQSHLV-NSSRKPLTCVAFSQNGRY----VATGE--CG---------RTPASKVWSLA----------- 110 (1080)
T ss_pred cEEEEEcccccchhhee-cccCcceeEEEEcCCCcE----EEecc--cC---------CCccceeeeec-----------
Confidence 56667777665444441 122235678899999997 65431 11 02223444443
Q ss_pred hhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 298 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
..+....+.++...+...+|||-+++|+-+....
T Consensus 111 -------~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQH 144 (1080)
T KOG1408|consen 111 -------FHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQH 144 (1080)
T ss_pred -------cccchhhhhhccccceeeeecCCCcEEEeecccc
Confidence 3345566777888899999999999998776554
No 445
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=94.38 E-value=0.13 Score=56.36 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=78.2
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCC----hhhh--hcCCC
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFG----EEAL--QSLPG 590 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~~~~g----~~~~--~~~~~ 590 (771)
.|..-+++|.+.. ++ ++.+=||++.. ...+.. .+..-.++||+++.-|- |..+.. .++. .....
T Consensus 16 ~i~fev~LP~~WN--gR---~~~~GgGG~~G-~i~~~~~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~ 88 (474)
T PF07519_consen 16 NIRFEVWLPDNWN--GR---FLQVGGGGFAG-GINYADGKASMATALARGYATASTDS-GHQGSAGSDDASFGNNPEALL 88 (474)
T ss_pred eEEEEEECChhhc--cC---eEEECCCeeeC-cccccccccccchhhhcCeEEEEecC-CCCCCcccccccccCCHHHHH
Confidence 4666677887432 11 44444444432 222211 13344588999999993 211111 1111 00011
Q ss_pred CccccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh
Q 004141 591 KVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~ 654 (771)
+++...+.+...+-+.|++. +...+++-+..|.|-||.-+++.|.++|+.|.++++.+|..++.
T Consensus 89 dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~ 153 (474)
T PF07519_consen 89 DFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWT 153 (474)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHH
Confidence 22333344555555666665 33568899999999999999999999999999999999988764
No 446
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.31 E-value=0.18 Score=55.11 Aligned_cols=177 Identities=12% Similarity=0.081 Sum_probs=95.3
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC
Q 004141 54 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS 133 (771)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~ 133 (771)
+-|.|..++.-++.+...+.|.+||+.. ....+.||.. ......+.|+|-|.+.|--+.. . =+.+|+..
T Consensus 74 eSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtgh-----~~~~~sv~f~P~~~~~a~gStd--t---d~~iwD~R 142 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTGH-----LLNITSVDFHPYGEFFASGSTD--T---DLKIWDIR 142 (825)
T ss_pred eeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhcc-----ccCcceeeeccceEEecccccc--c---cceehhhh
Confidence 3466666677778888888999999842 2233444332 2345667799999877432221 1 24455322
Q ss_pred --cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcc
Q 004141 134 --QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 211 (771)
Q Consensus 134 --~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 211 (771)
........ ..+. ...+.|+|||++++-..++...+ .|+...++-.+.+..+........+.+.---+
T Consensus 143 k~Gc~~~~~s---~~~v------v~~l~lsP~Gr~v~~g~ed~tvk--i~d~~agk~~~ef~~~e~~v~sle~hp~e~Ll 211 (825)
T KOG0267|consen 143 KKGCSHTYKS---HTRV------VDVLRLSPDGRWVASGGEDNTVK--IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLL 211 (825)
T ss_pred ccCceeeecC---Ccce------eEEEeecCCCceeeccCCcceee--eecccccccccccccccccccccccCchhhhh
Confidence 11222221 1111 15789999999998877744333 34432222222222222222222232221122
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004141 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
..+..+..+-.||+++=++..-. -+....+....|.|||+.
T Consensus 212 a~Gs~d~tv~f~dletfe~I~s~-~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 212 APGSSDRTVRFWDLETFEVISSG-KPETDGVRSLAFNPDGKI 252 (825)
T ss_pred ccCCCCceeeeeccceeEEeecc-CCccCCceeeeecCCcee
Confidence 33445678889998764443321 233456778899999984
No 447
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=94.30 E-value=0.88 Score=46.17 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=83.3
Q ss_pred CcceEEEEEeech-hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe
Q 004141 52 NGTQAMFSISQPN-LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW 130 (771)
Q Consensus 52 dg~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~ 130 (771)
.|--|.++..... |.++...+.|+++-... +.- .+...||......+...+|||.-+.+.+...-+ +.-.||.+.
T Consensus 213 EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W--~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D-gsIrIWDiR 288 (440)
T KOG0302|consen 213 EGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSW--KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD-GSIRIWDIR 288 (440)
T ss_pred cceeeecccccccccccCccccceEeeeecc-Cce--eecCccccccccchhhhccCCccCceEEeeecC-ceEEEEEec
Confidence 3444444443222 66666777777765543 221 122234444446688899999999886544333 444455444
Q ss_pred cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCc
Q 004141 131 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 210 (771)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 210 (771)
.+.+...+.. ....++| .-++|+-+...||+..
T Consensus 289 s~~~~~~~~~--kAh~sDV------NVISWnr~~~lLasG~--------------------------------------- 321 (440)
T KOG0302|consen 289 SGPKKAAVST--KAHNSDV------NVISWNRREPLLASGG--------------------------------------- 321 (440)
T ss_pred CCCccceeEe--eccCCce------eeEEccCCcceeeecC---------------------------------------
Confidence 3322222222 1111222 6889999988777743
Q ss_pred ccCCccCceEEEEEccC---CceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 211 TYAGKRQPSLFVININS---GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 211 ~~~~~~~~~l~v~d~~~---~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
....+-+||+.. +++...- .-....+.++.|+|.... ++.++
T Consensus 322 -----DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e~s----~iaas 366 (440)
T KOG0302|consen 322 -----DDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHEDS----VIAAS 366 (440)
T ss_pred -----CCceEEEEEhhhccCCCcceeE-EeccCCeeEEEeccccCc----eEEec
Confidence 235778888753 3222210 233457889999998776 55554
No 448
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=94.17 E-value=6.5 Score=41.95 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=73.8
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..+.+|++..+...... ......+..+.|+|+++. ++.... ....|..+|.
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----~~~~~~--------------~d~~i~~wd~---------- 228 (466)
T COG2319 178 GTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGL----LIASGS--------------SDGTIRLWDL---------- 228 (466)
T ss_pred CceEEEEcCCCceEEee-ccCCCceEEEEEcCCcce----EEEEec--------------CCCcEEEEEC----------
Confidence 67888888775544441 223556788999999984 444411 1113434465
Q ss_pred hhhcCCCCCCccee--cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 298 ELKESSSEDLPVVN--LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 298 ~~~~~~~~~~~~~~--lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
..+.... +..+.... ...|+|++..++..+.+ ..+.+++...... . +...
T Consensus 229 -------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d-----------~~~~~~~~~~~~~-~-------~~~~- 280 (466)
T COG2319 229 -------STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD-----------GTIRLWDLRSSSS-L-------LRTL- 280 (466)
T ss_pred -------CCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC-----------CcEEEeeecCCCc-E-------EEEE-
Confidence 3333322 33333332 23899999666523322 3467777655443 0 0000
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
.. . ...+....|.|++..++. ...++...+| +..++.....
T Consensus 281 ~~-~--------~~~v~~~~~~~~~~~~~~-~~~d~~~~~~--~~~~~~~~~~ 321 (466)
T COG2319 281 SG-H--------SSSVLSVAFSPDGKLLAS-GSSDGTVRLW--DLETGKLLSS 321 (466)
T ss_pred ec-C--------CccEEEEEECCCCCEEEE-eeCCCcEEEE--EcCCCceEEE
Confidence 00 0 012334578888886766 4444555566 7666654433
No 449
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=94.15 E-value=0.062 Score=57.62 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=54.4
Q ss_pred cchHHHHHHHHCCcEE----EE--ECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhH
Q 004141 554 SYSKSLAFLSSVGYSL----LI--VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 627 (771)
Q Consensus 554 ~~~~~~~~la~~G~~V----v~--~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG 627 (771)
.|...++.|.+.||.. ++ .|.|-+.. ....-...+...|+.+.+. ...+|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~------------~~~~~~~~lk~~ie~~~~~---~~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPA------------ERDEYFTKLKQLIEEAYKK---NGKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchh------------hHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCCCc
Confidence 5778899999988753 22 45554221 0011134555555555544 26799999999999
Q ss_pred HHHHHHHhhCCC------ceeEEEecCCcc
Q 004141 628 FLTTHLIGQAPD------KFVAAAARNPLC 651 (771)
Q Consensus 628 ~~a~~~a~~~p~------~~~~~v~~~p~~ 651 (771)
.++..++...+. .+++.|.+++..
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p~ 160 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTPF 160 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCCC
Confidence 999998887643 477888777543
No 450
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.12 E-value=3.1 Score=46.06 Aligned_cols=121 Identities=7% Similarity=0.000 Sum_probs=62.6
Q ss_pred HHHHHHhhcCccccceEEEecC------CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccc
Q 004141 28 SKLLQDFTNISSIDKAWTFNSG------NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGA 101 (771)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~------s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~ 101 (771)
.-+|.++..||+.....++|.. ...++.+++- ...+.++++. ..++..+.++... ..+..
T Consensus 14 ~p~~~~l~~i~~~~~~~~~~~~v~lTc~dst~~~l~~G---------sS~G~lyl~~--R~~~~~~~~~~~~---~~~~~ 79 (726)
T KOG3621|consen 14 APLTEVLERIPALLQPGFFPARVKLTCVDATEEYLAMG---------SSAGSVYLYN--RHTGEMRKLKNEG---ATGIT 79 (726)
T ss_pred cchhhhhhhhhhhhccccCcceEEEEEeecCCceEEEe---------cccceEEEEe--cCchhhhcccccC---ccceE
Confidence 3466677777777665555531 2233344433 3345566643 3444444444322 11335
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEecCC--cceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 102 SAVVPSPSGSKLLVVRNPENESPIQFELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
.....|++...+|+.... +.-.++.+.... ....++.......-. ..++.||+||+++++.
T Consensus 80 ~~~~vs~~e~lvAagt~~--g~V~v~ql~~~~p~~~~~~t~~d~~~~~r------VTal~Ws~~~~k~ysG 142 (726)
T KOG3621|consen 80 CVRSVSSVEYLVAAGTAS--GRVSVFQLNKELPRDLDYVTPCDKSHKCR------VTALEWSKNGMKLYSG 142 (726)
T ss_pred EEEEecchhHhhhhhcCC--ceEEeehhhccCCCcceeeccccccCCce------EEEEEecccccEEeec
Confidence 566789998888875443 222233333211 122233332211112 2699999999999874
No 451
>PRK13613 lipoprotein LpqB; Provisional
Probab=94.05 E-value=4.1 Score=46.04 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=58.9
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCC----ccceeecCCccccccceEEEeCCCCCeEEEEecCCC
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN 121 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~ 121 (771)
.+.+|.||..+|+... ....+++-.+. .+.. ...+... .....|+|.++| .+..+ +...
T Consensus 367 s~avS~~g~~~A~v~~--------~~~~l~vg~~~-~~~~~~~~~~~~~~~------~~Lt~PS~d~~g-~vWtv-d~~~ 429 (599)
T PRK13613 367 RVAVSRDESRAAGISA--------DGDSVYVGSLT-PGASIGVHSWGVTAD------GRLTSPSWDGRG-DLWVV-DRDP 429 (599)
T ss_pred ceEEcCCCceEEEEcC--------CCcEEEEeccC-CCCccccccceeecc------CcccCCcCcCCC-CEEEe-cCCC
Confidence 5566889999998742 12355553331 1212 1122222 346789999999 66544 4432
Q ss_pred CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 122 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
...+++.+. ..++... ++.. ...| ..+..+..|+||.++|.+.+..
T Consensus 430 ~~~~vl~v~~~~G~~~~-V~~~-~l~g-----~~I~~lrvSrDG~RvAvv~~~~ 476 (599)
T PRK13613 430 ADPRLLWLLQGDGEPVE-VRTP-ELDG-----HRVVAVRVARDGVRVALIVEKD 476 (599)
T ss_pred CCceEEEEEcCCCcEEE-eecc-ccCC-----CEeEEEEECCCccEEEEEEecC
Confidence 334444444 5454433 2222 1111 1348999999999999997643
No 452
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=93.94 E-value=7.1 Score=38.55 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=67.6
Q ss_pred cCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC-ceeEEEecccccch
Q 004141 216 RQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP-CALYAVRVSLYKSE 293 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~-~~l~~~d~~~~~~~ 293 (771)
...++.+.|+++|..... ..+ ...+-.+.|||-.++ +++++--++.-|+ ++..|. +-+..+|.
T Consensus 166 r~~~VrLCDi~SGs~sH~--LsGHr~~vlaV~Wsp~~e~----vLatgsaDg~irl---WDiRrasgcf~~lD~------ 230 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHT--LSGHRDGVLAVEWSPSSEW----VLATGSADGAIRL---WDIRRASGCFRVLDQ------ 230 (397)
T ss_pred CCCcEEEEeccCCcceee--eccccCceEEEEeccCcee----EEEecCCCceEEE---EEeecccceeEEeec------
Confidence 347889999999988776 343 346778999999998 8887733321110 111111 12333443
Q ss_pred hhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004141 294 ASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
.++... +.-+.+.+.+.+.+|+.||.+++....++ ++.+|+...|...
T Consensus 231 ----------hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-----------r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 231 ----------HNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-----------RIRVWNMESGRNT 281 (397)
T ss_pred ----------ccCccCccccccccccceeeeeeecccchhhhhccCcc-----------ceEEeecccCccc
Confidence 122221 11233456688999999999988766553 4777777666653
No 453
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.90 E-value=2.8 Score=44.74 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=43.9
Q ss_pred ccceEEEecCCCCCccEEEEEeecCccee---eee--eeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRK---LGI--KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~---~g~--~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
....+.|.|||+ |++..-...... .+. .........|++++. ++++.+.+...
T Consensus 125 ~~~~l~~gpDG~-----LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p-----------------dg~~~e~~a~G 182 (367)
T TIGR02604 125 SLNSLAWGPDGW-----LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP-----------------DGGKLRVVAHG 182 (367)
T ss_pred cccCceECCCCC-----EEEecccCCCceeccCCCccCcccccCceEEEEec-----------------CCCeEEEEecC
Confidence 456789999996 776432111000 000 000112357999997 77777777766
Q ss_pred CccccceeecCCCCEEEEEec
Q 004141 316 ISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~ 336 (771)
.......+|+|+|+. ++..+
T Consensus 183 ~rnp~Gl~~d~~G~l-~~tdn 202 (367)
T TIGR02604 183 FQNPYGHSVDSWGDV-FFCDN 202 (367)
T ss_pred cCCCccceECCCCCE-EEEcc
Confidence 666778999999984 44444
No 454
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=0.24 Score=47.67 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=23.6
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeE
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~ 643 (771)
-.+.+|+|-||||.+|..+...++.-++-
T Consensus 194 ~g~~~~~g~Smgg~~a~~vgS~~q~Pva~ 222 (371)
T KOG1551|consen 194 LGNLNLVGRSMGGDIANQVGSLHQKPVAT 222 (371)
T ss_pred cccceeeeeecccHHHHhhcccCCCCccc
Confidence 46799999999999999998877654433
No 455
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.50 E-value=0.53 Score=51.05 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=85.0
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCC--CCCCCCccCCCCCCcccccCCcCccc-CCccCceEEEEEccCCceee
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGST--KGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQA 232 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~~~~~~ 232 (771)
..+..--+|+.|+..+.+.+.+ .|..... -.......+..|..-..+-..-.+++ .+.-...|++||+.++..+.
T Consensus 77 NDiiL~~~~~tlIS~SsDtTVK--~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l 154 (735)
T KOG0308|consen 77 NDIILCGNGKTLISASSDTTVK--VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL 154 (735)
T ss_pred hhHHhhcCCCceEEecCCceEE--EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhh
Confidence 4555666777776666555443 2332111 11223334555555444422212333 23346799999999885422
Q ss_pred cc--------CCC--CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC
Q 004141 233 VK--------GIP--KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 233 l~--------~~~--~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
+. .+. ...++.+++-.+.|. ++..+ .....|..+|.-
T Consensus 155 ~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-----~ivsG--------------gtek~lr~wDpr-------------- 201 (735)
T KOG0308|consen 155 VASFNNVTVNSLGSGPKDSIYSLAMNQTGT-----IIVSG--------------GTEKDLRLWDPR-------------- 201 (735)
T ss_pred hhhccccccccCCCCCccceeeeecCCcce-----EEEec--------------CcccceEEeccc--------------
Confidence 21 000 111233444444442 33222 122367777751
Q ss_pred CCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 303 SSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 303 ~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
...+..+|..+...++....++||++++-.+.+. .|.+||+..
T Consensus 202 --t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg-----------tIrlWdLgq 244 (735)
T KOG0308|consen 202 --TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG-----------TIRLWDLGQ 244 (735)
T ss_pred --cccceeeeeccccceEEEEEcCCCCeEeecCCCc-----------eEEeeeccc
Confidence 3345667777777899999999999998877663 477888754
No 456
>PRK13614 lipoprotein LpqB; Provisional
Probab=93.44 E-value=9.1 Score=42.92 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=52.3
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeec---CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW---PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
.+...+.|+||.+++.+...+ | ..+|++.-+ ..|..+.++... .+. ......++
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~~----g----~~~V~va~V~R~~~G~P~~L~~~~----~~~-----------~~~~~~sl 491 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQN----G----KSRVQVAGIVRNEDGTPRELTAPI----TLA-----------ADSDADTG 491 (573)
T ss_pred eeEEEEECCCccEEEEEEEeC----C----ccEEEEEEEEeCCCCCeEEccCce----ecc-----------cCCCccee
Confidence 488999999999999988654 2 234655332 223323332211 000 00134578
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 395 ~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
.|..|+..++.....++....+.+.+..|..+.+.
T Consensus 492 ~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~l~ 526 (573)
T PRK13614 492 AWVGDSTVVVTKASATSNVVPELLSVDAGQPQQLA 526 (573)
T ss_pred EEcCCCEEEEEeccCCCcceEEEEEeCCCCcccCC
Confidence 89988875555555555666777777666655433
No 457
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.43 E-value=9.3 Score=38.26 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=59.1
Q ss_pred cCceEEEEEccCCce---eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 216 RQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~---~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
+..+|-+.|+...+. ..+ ...+..+.-++.+-||.. |+..+. ...-|.++|.
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I--~AH~s~Iacv~Ln~~Gt~----vATaSt--------------kGTLIRIFdt----- 211 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSII--NAHDSDIACVALNLQGTL----VATAST--------------KGTLIRIFDT----- 211 (346)
T ss_pred ccceEEEEEhhhcCcCCceEE--EcccCceeEEEEcCCccE----EEEecc--------------CcEEEEEEEc-----
Confidence 347888999876655 455 455667888999999997 776652 2235677776
Q ss_pred hhhhhhhhcCCCCCCc-ceecCCC--CccccceeecCCCCEEEEEecCC
Q 004141 293 EASELELKESSSEDLP-VVNLTES--ISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+|+ ...+..+ ...+...+||||+++|+..|...
T Consensus 212 ------------~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 212 ------------EDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred ------------CCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 4444 3334332 23477899999999999888764
No 458
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=93.36 E-value=0.14 Score=48.59 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=52.7
Q ss_pred CcEEEEECCCCCCCCChh-hhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC----C--
Q 004141 566 GYSLLIVNYRGSLGFGEE-ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----P-- 638 (771)
Q Consensus 566 G~~Vv~~d~rG~~~~g~~-~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~----p-- 638 (771)
-..|++|-||-..-.... ...............|+.+|.++.+++.. +...++|+|||.|+.+...++... |
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~ 123 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEEIAGDPLR 123 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHHhcCchHH
Confidence 478999999954322111 00000111223347899999998777642 345899999999999999998764 2
Q ss_pred -CceeEEEecCCcc
Q 004141 639 -DKFVAAAARNPLC 651 (771)
Q Consensus 639 -~~~~~~v~~~p~~ 651 (771)
.++++-++..++.
T Consensus 124 ~rLVAAYliG~~v~ 137 (207)
T PF11288_consen 124 KRLVAAYLIGYPVT 137 (207)
T ss_pred hhhheeeecCcccc
Confidence 2345555554543
No 459
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.35 E-value=6.7 Score=41.83 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=39.8
Q ss_pred CCCCccccCCCEEEEEeeeC-----------------CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 391 ILSNPWLSDGCTMLLSSIWG-----------------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 391 ~~~~~~s~Dg~~l~~~~~~~-----------------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
...+.|.|||+ ||++.... ....+++++.++++.+.+...........|+++|+. +++-.
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l-~~tdn 202 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDV-FFCDN 202 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCE-EEEcc
Confidence 45788999996 77755421 013699999999888877655433344678887764 44443
No 460
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=93.29 E-value=0.19 Score=45.16 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-------CCceeEEEecCCcc
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-------PDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-------p~~~~~~v~~~p~~ 651 (771)
.+.+...++.+.++.. ..+|.+.|||+||.+|..++... +..+.+....+|.+
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 4456666666666643 47899999999999999887642 14466666666654
No 461
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=2.5 Score=43.77 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=57.9
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 704 ~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
..+.+.+.+..|.++|..+.+++.+..++.|+.++.+-+.++.|..........+++.+.+|++..
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~ 290 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSV 290 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhc
Confidence 467788889999999999999999999999999999999999998766666778899999999864
No 462
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=93.00 E-value=2.8 Score=45.68 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=26.9
Q ss_pred cCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCC
Q 004141 216 RQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~ 253 (771)
++..+..||+++++..... .......+.+.+|.|+..-
T Consensus 120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~ 158 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPA 158 (720)
T ss_pred CCceeeeeeeccceeecceeecccccccchhhhccCCCc
Confidence 4478889999888765441 1344557788999999884
No 463
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=92.89 E-value=14 Score=41.46 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=54.4
Q ss_pred cCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 216 RQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.+..|.+|++++++...+ .. ....+..+... +.. ++..+ ....|-++|+
T Consensus 309 ~D~tVkVW~v~n~~~l~l--~~~h~~~V~~v~~~--~~~----lvsgs---------------~d~~v~VW~~------- 358 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNL--LRGHTGPVNCVQLD--EPL----LVSGS---------------YDGTVKVWDP------- 358 (537)
T ss_pred CCceEEEEeccCcceEEE--eccccccEEEEEec--CCE----EEEEe---------------cCceEEEEEh-------
Confidence 457999999999988777 33 34455555554 443 44443 1125666666
Q ss_pred hhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004141 295 SELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 295 ~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
..++ ...|+.+.+.+.+..+.+. ..++-.+.+ ..|.+||+.+.
T Consensus 359 ----------~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D-----------~~IkvWdl~~~ 402 (537)
T KOG0274|consen 359 ----------RTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD-----------TTIKVWDLRTK 402 (537)
T ss_pred ----------hhceeeeeecCCcceEEEEEecCc-ceEEeeeec-----------cceEeecCCch
Confidence 4444 4566777777776655443 444444433 23667776665
No 464
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=5.4 Score=43.54 Aligned_cols=238 Identities=10% Similarity=0.070 Sum_probs=121.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+-.+.+.|---+++-.--. +.-+||.. ......+.+++..-. .....|=+--.+|+..+++-..+
T Consensus 15 RVKsVd~HPtePw~la~Lyn--G~V~IWny-etqtmVksfeV~~~P---------vRa~kfiaRknWiv~GsDD~~Ir-- 80 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYN--GDVQIWNY-ETQTMVKSFEVSEVP---------VRAAKFIARKNWIVTGSDDMQIR-- 80 (794)
T ss_pred ceeeeecCCCCceEEEeeec--CeeEEEec-ccceeeeeeeecccc---------hhhheeeeccceEEEecCCceEE--
Confidence 45567777777766543322 32333322 222334444432111 13445555555566555444322
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCCCccE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.+......+...+..+..+...+..-|-.--.++...+-.|-+||.+.+= .+.. ......+.+++|.|.....
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf--eGH~HyVMqv~fnPkD~nt--- 155 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF--EGHEHYVMQVAFNPKDPNT--- 155 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE--cCcceEEEEEEecCCCccc---
Confidence 12222222233334455555444433333333444456677778877652 2333 3345578899999955430
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.+-. |.++ .|-++.+. .......|..+...+....+=|-|.+=+.++..
T Consensus 156 FaS~-------------sLDr--TVKVWslg----------------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga 204 (794)
T KOG0276|consen 156 FASA-------------SLDR--TVKVWSLG----------------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA 204 (794)
T ss_pred eeee-------------eccc--cEEEEEcC----------------CCCCceeeeccccCcceEEeccCCCcceEEecC
Confidence 3332 2344 34444441 233345677777778888888877655555543
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+ ...|.+||.++..-.+..++.. .++...+|.|.=. |+.+.+.++..+||
T Consensus 205 D---------D~tiKvWDyQtk~CV~TLeGHt-------------------~Nvs~v~fhp~lp-iiisgsEDGTvriW 254 (794)
T KOG0276|consen 205 D---------DLTIKVWDYQTKSCVQTLEGHT-------------------NNVSFVFFHPELP-IIISGSEDGTVRIW 254 (794)
T ss_pred C---------CceEEEeecchHHHHHHhhccc-------------------ccceEEEecCCCc-EEEEecCCccEEEe
Confidence 3 2457888888765544333321 1234445555433 66666667777766
No 465
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=92.74 E-value=15 Score=40.07 Aligned_cols=95 Identities=18% Similarity=0.183 Sum_probs=60.2
Q ss_pred ceEEEEEccCCceeecc--CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 218 PSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~--~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
-+-++++...++++++. -++-...+...+++|+.++ ++... .++.|..+|.
T Consensus 236 ~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k----LvlGC---------------~DgSiiLyD~-------- 288 (545)
T PF11768_consen 236 ADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK----LVLGC---------------EDGSIILYDT-------- 288 (545)
T ss_pred eEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce----EEEEe---------------cCCeEEEEEc--------
Confidence 34566666666665542 1344445677899999998 87765 3347888885
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
. .....++...-.....+|.|||..++..+.+ .+|..+|..-+.
T Consensus 289 ---------~-~~~t~~~ka~~~P~~iaWHp~gai~~V~s~q-----------GelQ~FD~ALsp 332 (545)
T PF11768_consen 289 ---------T-RGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQ-----------GELQCFDMALSP 332 (545)
T ss_pred ---------C-CCeeeeeeecccceEEEEcCCCcEEEEEcCC-----------ceEEEEEeecCc
Confidence 2 2334444444557788999999977665544 246677755433
No 466
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=18 Score=39.68 Aligned_cols=169 Identities=14% Similarity=0.161 Sum_probs=87.9
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCc--ceEEEecCCcc
Q 004141 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQ--LEKEFHVPQTV 145 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~ 145 (771)
+.+.+|.++..++.. +..++.- ....+...+..|.--+++..+++- ++.+|+ .+. ..+.... ..
T Consensus 74 sDD~~IrVfnynt~e-kV~~FeA-----H~DyIR~iavHPt~P~vLtsSDDm-----~iKlW~we~~wa~~qtfeG--H~ 140 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTGE-KVKTFEA-----HSDYIRSIAVHPTLPYVLTSSDDM-----TIKLWDWENEWACEQTFEG--HE 140 (794)
T ss_pred cCCceEEEEecccce-eeEEeec-----cccceeeeeecCCCCeEEecCCcc-----EEEEeeccCceeeeeEEcC--cc
Confidence 444556665553331 2333322 235677888888777666554432 566662 222 2222221 11
Q ss_pred cccccCCCcccceeecC-CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC--cCcccCCccCceEEE
Q 004141 146 HGSVYADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED--WGETYAGKRQPSLFV 222 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~g~~~~~~~~~~l~v 222 (771)
| ....++|.| |-..+|..+-+.+.+ .|..........+..+..-.+-+.|-+- ---.+++..+..|-+
T Consensus 141 H-------yVMqv~fnPkD~ntFaS~sLDrTVK--VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 141 H-------YVMQVAFNPKDPNTFASASLDRTVK--VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKV 211 (794)
T ss_pred e-------EEEEEEecCCCccceeeeeccccEE--EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEE
Confidence 1 125888999 566677766666544 4443322222333333333333334332 224456667789999
Q ss_pred EEccCCceeeccCCCCC-CccceEEEecCCCCCccEEEEEeecCc
Q 004141 223 ININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 223 ~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~~~l~~~~~~~~ 266 (771)
||-.+....+. ..+. ..+..+.|.|.=. |+.++.+++
T Consensus 212 WDyQtk~CV~T--LeGHt~Nvs~v~fhp~lp-----iiisgsEDG 249 (794)
T KOG0276|consen 212 WDYQTKSCVQT--LEGHTNNVSFVFFHPELP-----IIISGSEDG 249 (794)
T ss_pred eecchHHHHHH--hhcccccceEEEecCCCc-----EEEEecCCc
Confidence 99998875554 2332 2455666777544 444444444
No 467
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=92.71 E-value=0.26 Score=45.07 Aligned_cols=39 Identities=26% Similarity=0.183 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP 638 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p 638 (771)
..+...++....+ ....+|.++|||+||.+|..++....
T Consensus 12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3444444444333 24578999999999999999887653
No 468
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.58 E-value=1.1 Score=48.87 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=90.2
Q ss_pred CCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc---eeeccCCCCCCccceEEE-ecCCCCCccEEEEEeecCc
Q 004141 191 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE---VQAVKGIPKSLSVGQVVW-APLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 191 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~---~~~l~~~~~~~~~~~~~w-spDg~~~~~~l~~~~~~~~ 266 (771)
....+..|..+.....+....+....+..+-+|+...+. ...| -....++.-++. .++.. ++.++
T Consensus 68 sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti--r~H~DYVkcla~~ak~~~-----lvaSg---- 136 (735)
T KOG0308|consen 68 SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI--RTHKDYVKCLAYIAKNNE-----LVASG---- 136 (735)
T ss_pred hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh--hcccchheeeeecccCce-----eEEec----
Confidence 444577788777777775556666778899999987664 1222 223335666666 55544 44443
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc------ee-----cC-CCCccccceeecCCCCEEEEE
Q 004141 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV------VN-----LT-ESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~-----lt-~~~~~~~~p~~SpDG~~l~f~ 334 (771)
.-+..|+++|+ +++.. .+ +. ....++.+.+-.+.|..|+
T Consensus 137 ----------GLD~~IflWDi-----------------n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv-- 187 (735)
T KOG0308|consen 137 ----------GLDRKIFLWDI-----------------NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV-- 187 (735)
T ss_pred ----------CCCccEEEEEc-----------------cCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE--
Confidence 12237888888 44422 11 11 1222355556666664333
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 414 (771)
+. +....|.+||-.+.+...-..+. ..++..+..++||.+++ +++.++..+
T Consensus 188 sG---------gtek~lr~wDprt~~kimkLrGH-------------------TdNVr~ll~~dDGt~~l-s~sSDgtIr 238 (735)
T KOG0308|consen 188 SG---------GTEKDLRLWDPRTCKKIMKLRGH-------------------TDNVRVLLVNDDGTRLL-SASSDGTIR 238 (735)
T ss_pred ec---------CcccceEEeccccccceeeeecc-------------------ccceEEEEEcCCCCeEe-ecCCCceEE
Confidence 21 11356888888776642211111 11344555788998875 555677778
Q ss_pred EEEEEC
Q 004141 415 IISVNV 420 (771)
Q Consensus 415 l~~~d~ 420 (771)
||-+..
T Consensus 239 lWdLgq 244 (735)
T KOG0308|consen 239 LWDLGQ 244 (735)
T ss_pred eeeccc
Confidence 886543
No 469
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=92.57 E-value=2.8 Score=43.07 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=52.9
Q ss_pred eEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhh
Q 004141 219 SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298 (771)
Q Consensus 219 ~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~ 298 (771)
.+.++....+..+.+ ..+-..+.+++||||++. |++. . |+.+|++...+
T Consensus 133 ~~di~s~~~~~~~~~--lGhvSml~dVavS~D~~~----Iita-D--------------RDEkIRvs~yp---------- 181 (390)
T KOG3914|consen 133 SFDILSADSGRCEPI--LGHVSMLLDVAVSPDDQF----IITA-D--------------RDEKIRVSRYP---------- 181 (390)
T ss_pred eeeeecccccCcchh--hhhhhhhheeeecCCCCE----EEEe-c--------------CCceEEEEecC----------
Confidence 344444444555555 344446789999999986 5554 2 44467776653
Q ss_pred hhcCCCCCCccee-cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 299 LKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 299 ~~~~~~~~~~~~~-lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+.-.... ...+...+..+..-++ ..|+-.+ +...|++||+.+|..
T Consensus 182 ------a~f~IesfclGH~eFVS~isl~~~-~~LlS~s-----------GD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 182 ------ATFVIESFCLGHKEFVSTISLTDN-YLLLSGS-----------GDKTLRLWDITSGKL 227 (390)
T ss_pred ------cccchhhhccccHhheeeeeeccC-ceeeecC-----------CCCcEEEEecccCCc
Confidence 2222211 2234444666665543 3333222 235799999988775
No 470
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.57 E-value=9.7 Score=42.55 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=55.7
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.+.+|.||..+++... ...++... .++..+.+... .....|+|.++| .+..+.+.. ..
T Consensus 338 s~avS~dg~~~A~v~~---------~~~l~vg~---~~~~~~~~~~~------~~Lt~PS~d~~g-~vWtv~~g~---~~ 395 (557)
T PRK13615 338 AATLSADGRQAAVRNA---------SGVWSVGD---GDRDAVLLDTR------PGLVAPSLDAQG-YVWSTPASD---PR 395 (557)
T ss_pred cceEcCCCceEEEEcC---------CceEEEec---CCCcceeeccC------CccccCcCcCCC-CEEEEeCCC---ce
Confidence 4556778888888732 12344422 22233333222 346789999999 676554322 22
Q ss_pred EEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 126 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
.+... ..|.... +..+... ++.+..+..|+||.++|.+.+..
T Consensus 396 ~l~~~~~~G~~~~-v~v~~~~------~~~I~~lrvSrDG~R~Avi~~~~ 438 (557)
T PRK13615 396 GLVAWGPDGVGHP-VAVSWTA------TGRVVSLEVARDGARVLVQLETG 438 (557)
T ss_pred EEEEecCCCceEE-eeccccC------CCeeEEEEeCCCccEEEEEEecC
Confidence 33333 3344432 2333322 23348999999999999987643
No 471
>PLN02606 palmitoyl-protein thioesterase
Probab=92.51 E-value=1.2 Score=44.78 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=57.0
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+.| ||+.||-+.......+....+.+.+ .|.-+..+. .|. +. .. .+.....+.+..+-+.|.+.+..
T Consensus 26 ~~P-vViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~---~~--~~----s~~~~~~~Qv~~vce~l~~~~~L- 93 (306)
T PLN02606 26 SVP-FVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGN---GV--QD----SLFMPLRQQASIACEKIKQMKEL- 93 (306)
T ss_pred CCC-EEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECC---Cc--cc----ccccCHHHHHHHHHHHHhcchhh-
Confidence 456 6677997644444466666666642 366555554 231 11 01 11111123333333334332222
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCC--ceeEEEecCC
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 649 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~p 649 (771)
.+-+-++|+|.||.+.-.++.+.|+ .++-.|..++
T Consensus 94 ~~G~naIGfSQGglflRa~ierc~~~p~V~nlISlgg 130 (306)
T PLN02606 94 SEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGG 130 (306)
T ss_pred cCceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecC
Confidence 2358999999999999999998876 3666665543
No 472
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.38 E-value=6.3 Score=42.67 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=61.4
Q ss_pred CccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 214 GKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 214 ~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
+.....++++++.+|+++.-.-+.. ...+....|+.+-. .+|+. ....++..++.
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-----ciyS~--------------~ad~~v~~~~~----- 131 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-----CIYSV--------------GADLKVVYILE----- 131 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC-----ceEec--------------CCceeEEEEec-----
Confidence 4456789999999998766521122 22445555655544 34433 13335666665
Q ss_pred hhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004141 293 EASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
......+.-. ....+.+...||||+.|+..+ .+|-++|+++++..
T Consensus 132 ------------~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-------------~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 132 ------------KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-------------RQIKVLDIETKEVV 177 (541)
T ss_pred ------------ccceeeeeeccCCCccceEEEcCCCCEEEecc-------------ceEEEEEccCceEE
Confidence 4444444332 334578899999999887554 35899999887753
No 473
>PRK13614 lipoprotein LpqB; Provisional
Probab=92.31 E-value=7.1 Score=43.73 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=36.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
....++.|+||+.+|++.. ....++..+.++..+.+... ... ..++|+++| .+..+
T Consensus 344 ~~~s~avS~~g~~~A~~~~---~~~~l~~~~~g~~~~~~~~g-~~L----------t~PS~d~~g-~vWtv 399 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNG---SRTTLYTVSPGQPARALTSG-STL----------TRPSFSPQD-WVWTA 399 (573)
T ss_pred cccceeecCCCceEEEecC---CCcEEEEecCCCcceeeecC-CCc----------cCCcccCCC-CEEEe
Confidence 4667899999999999833 23466666655544444432 222 589999998 55443
No 474
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=92.26 E-value=12 Score=36.56 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=46.5
Q ss_pred CCCccccceeecCCCC-EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCC
Q 004141 314 ESISSAFFPRFSPDGK-FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 392 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~-~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 392 (771)
.+.+.++...|||-|- -|.|.+.. ...+++.|+.+....++.- ...+..|. .-...+.
T Consensus 248 ~hnGa~R~c~Fsl~g~lDLLf~sEh----------fs~~hv~D~R~~~~~q~I~----------i~~d~~~~-~~tq~if 306 (344)
T KOG4532|consen 248 HHNGAFRVCRFSLYGLLDLLFISEH----------FSRVHVVDTRNYVNHQVIV----------IPDDVERK-HNTQHIF 306 (344)
T ss_pred CCCCceEEEEecCCCcceEEEEecC----------cceEEEEEcccCceeeEEe----------cCcccccc-ccccccc
Confidence 4677899999998664 35666643 3568899988766533211 11111111 0001234
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 004141 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 393 ~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
.-.|+.++..++..+. .+++.+++.+
T Consensus 307 gt~f~~~n~s~~v~~e----~~~ae~ni~s 332 (344)
T KOG4532|consen 307 GTNFNNENESNDVKNE----LQGAEYNILS 332 (344)
T ss_pred cccccCCCcccccccc----hhhheeeccc
Confidence 5567777776665443 3456666544
No 475
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=92.19 E-value=0.99 Score=44.98 Aligned_cols=144 Identities=16% Similarity=0.132 Sum_probs=83.7
Q ss_pred cCceEEEEEccCCceeecc---CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 216 RQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~---~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
.+-.||-...+++ .+.+. ....+......+|+-|-....-++|..+ +.+.|+++|+
T Consensus 64 ~rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G---------------~~GvIrVid~----- 122 (385)
T KOG1034|consen 64 NRVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG---------------YLGVIRVIDV----- 122 (385)
T ss_pred cEEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec---------------ceeEEEEEec-----
Confidence 4455666655552 22221 1112223445688887653222233332 3347999998
Q ss_pred hhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 293 EASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
..++ ...+..+.+.+...++-|+--.|+.....+ ..|.+|++++..-..+..+...
T Consensus 123 ------------~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD----------~svRlwnI~~~~Cv~VfGG~eg- 179 (385)
T KOG1034|consen 123 ------------VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD----------HSVRLWNIQTDVCVAVFGGVEG- 179 (385)
T ss_pred ------------chhhhccceeccCccchhhhcCCCCCcEEEEecCC----------ceEEEEeccCCeEEEEeccccc-
Confidence 5554 456777888899999999987777766554 3488888887665433222210
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
+...+-++.|+.||.+| ++..-+....+|+++
T Consensus 180 ---------------HrdeVLSvD~~~~gd~i-~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 180 ---------------HRDEVLSVDFSLDGDRI-ASCGMDHSLKLWRLN 211 (385)
T ss_pred ---------------ccCcEEEEEEcCCCCee-eccCCcceEEEEecC
Confidence 11124477899999965 444444555666655
No 476
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=92.01 E-value=0.27 Score=53.96 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=53.7
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhC-CC-------CEEEEEeCCCCccCCCC-CChHHHHHHHHHHHHH
Q 004141 704 KTPTIFLLGAQDLRVPVSNGLQYARALREK-GV-------ETKVIVFPNDVHGIERP-QSDFESFLNIGLWFKK 768 (771)
Q Consensus 704 ~~P~lii~G~~D~~vp~~~~~~~~~~l~~~-g~-------~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~fl~~ 768 (771)
--.+|+.||..|..+|+..+..+|+++.+. +. -.++.++||.+|+...+ ....+.+..+.+|.++
T Consensus 353 GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 368999999999999999999999998765 21 26899999999987654 3345789999999875
No 477
>PRK13615 lipoprotein LpqB; Provisional
Probab=91.91 E-value=8.7 Score=42.92 Aligned_cols=160 Identities=9% Similarity=-0.039 Sum_probs=87.3
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 102 SAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
..++.|+||+.+|++... ..+.+...+ ..+.+.. .... ..|+|+++| .+..+.+..
T Consensus 337 ~s~avS~dg~~~A~v~~~-----~~l~vg~~~~~~~~~~~-~~~L----------t~PS~d~~g-~vWtv~~g~------ 393 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS-----GVWSVGDGDRDAVLLDT-RPGL----------VAPSLDAQG-YVWSTPASD------ 393 (557)
T ss_pred ccceEcCCCceEEEEcCC-----ceEEEecCCCcceeecc-CCcc----------ccCcCcCCC-CEEEEeCCC------
Confidence 678999999999998431 245555333 3333322 2222 589999999 555432211
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCccEEE
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
...+.... .+|+...+. .......+..+..|+||-+ ++
T Consensus 394 ------------------------------------~~~l~~~~-~~G~~~~v~v~~~~~~~I~~lrvSrDG~R----~A 432 (557)
T PRK13615 394 ------------------------------------PRGLVAWG-PDGVGHPVAVSWTATGRVVSLEVARDGAR----VL 432 (557)
T ss_pred ------------------------------------ceEEEEec-CCCceEEeeccccCCCeeEEEEeCCCccE----EE
Confidence 11222221 223333331 0112335788999999999 98
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-------CCCCccccceeecCCCCEEE
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-------t~~~~~~~~p~~SpDG~~l~ 332 (771)
++....+ ..+|++.-+-. .++..+.| ........+..|..|++ |+
T Consensus 433 vi~~~~g------------~~~V~va~V~R---------------~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~-la 484 (557)
T PRK13615 433 VQLETGA------------GPQLLVASIVR---------------DGGVPTSLTTTPLELLASPGTPLDATWVDELD-VA 484 (557)
T ss_pred EEEecCC------------CCEEEEEEEEe---------------CCCcceEeeeccEEcccCcCcceeeEEcCCCE-EE
Confidence 8864322 12455433310 12222333 33344678899999887 66
Q ss_pred EEecCCCCCCCCccccccceeeecCCCC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.+.... | ...+++++.+.+..
T Consensus 485 Vl~~~~----~---~~~~v~~v~v~g~~ 505 (557)
T PRK13615 485 TLTLAP----D---GERQVELHQVGGPS 505 (557)
T ss_pred EEeccC----C---CCceEEEEECCCcc
Confidence 666432 1 23557777776433
No 478
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.84 E-value=6.4 Score=41.11 Aligned_cols=161 Identities=12% Similarity=0.148 Sum_probs=94.3
Q ss_pred ccccCCcCc-ccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004141 202 GDWEEDWGE-TYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 202 ~~~~~d~g~-~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
..|...|.. +..+.....+.+||+++|++... ++ ....+....|.|..-. ++..+- ..
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s--~~~~~k~Vq~l~wh~~~p~----~LLsGs--------------~D 308 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS--ITHHGKKVQTLEWHPYEPS----VLLSGS--------------YD 308 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEcCCCCccee--hhhcCCceeEEEecCCCce----EEEecc--------------cc
Confidence 345555543 33555678999999999999888 44 4557889999998776 555541 22
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004141 280 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
..+.+.|.-. ....+..-+. .+.+....|.|-....+|.+.++ | .|+-+|+...
T Consensus 309 ~~V~l~D~R~-------------~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tdd----G------~v~~~D~R~~ 362 (463)
T KOG0270|consen 309 GTVALKDCRD-------------PSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDD----G------TVYYFDIRNP 362 (463)
T ss_pred ceEEeeeccC-------------ccccCceEEe---ccceEEEEecCCCceeEEEecCC----c------eEEeeecCCC
Confidence 2455555410 0012222221 23466778888777777777554 3 4777776554
Q ss_pred CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004141 360 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
+. .+-+- . ++...+..+++++.-..++.+.+......||.++....+..
T Consensus 363 ~~-~vwt~-------~----------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 363 GK-PVWTL-------K----------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred CC-ceeEE-------E----------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence 31 11000 0 11223556666665556766666667778888877655433
No 479
>PRK13613 lipoprotein LpqB; Provisional
Probab=91.62 E-value=9.2 Score=43.32 Aligned_cols=86 Identities=20% Similarity=0.172 Sum_probs=49.4
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC--CCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
.+...+.|+||.+++.+.... | ..+|++--+.. .+...++.-. .+.. . .....++.
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~----g----~~~v~va~V~R~~~G~~~l~~~~-~l~~---~----------l~~v~~~~ 513 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKD----G----RRSLQIGRIVRDAKAVVSVEEFR-SLAP---E----------LEDVTDMS 513 (599)
T ss_pred EeEEEEECCCccEEEEEEecC----C----CcEEEEEEEEeCCCCcEEeeccE-Eecc---C----------CCccceeE
Confidence 688999999999999998653 1 23455433321 2222222111 0000 0 01245788
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcE
Q 004141 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGEL 425 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~ 425 (771)
|..++..++......+...+|.+++++...
T Consensus 514 W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~ 543 (599)
T PRK13613 514 WAGDSQLVVLGREEGGVQQARYVQVDGSTP 543 (599)
T ss_pred EcCCCEEEEEeccCCCCcceEEEecCCcCc
Confidence 998887444444444566799999875544
No 480
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.57 E-value=5.8 Score=39.37 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=53.8
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..--+||+++|++..+. +..+.......-.|..+ |+.++.++. ...++|+-
T Consensus 294 RTAnlwDVEtge~v~~L-tGHd~ELtHcstHptQr-----LVvTsSrDt--------------TFRLWDFR--------- 344 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNIL-TGHDSELTHCSTHPTQR-----LVVTSSRDT--------------TFRLWDFR--------- 344 (481)
T ss_pred ccceeeeeccCceeccc-cCcchhccccccCCcce-----EEEEeccCc--------------eeEeccch---------
Confidence 45568999999987662 33444455666677655 666663332 23333431
Q ss_pred hhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 298 ELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 298 ~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+.- ....+..+...+.+..|.-|.+ ++-.+.+ ..+.+||+..
T Consensus 345 -------eaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD-----------rTvKvWdLrN 387 (481)
T KOG0300|consen 345 -------EAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD-----------RTVKVWDLRN 387 (481)
T ss_pred -------hhcceeeeecccccceeEEEEecCCc-eeecCCC-----------ceEEEeeecc
Confidence 111 2233344556788899988866 4444433 3477788754
No 481
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=91.56 E-value=4.6 Score=43.97 Aligned_cols=153 Identities=12% Similarity=0.050 Sum_probs=81.4
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+.+|.++...+++...|.-.-.+..+-.+.||-...+ .+++-...-..+... ..+-.+++.
T Consensus 182 draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~----qi~tVE~s~s~~g~~------~~d~ciYE~-------- 243 (545)
T PF11768_consen 182 DRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPY----QIHTVEQSISVKGEP------SADSCIYEC-------- 243 (545)
T ss_pred hhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCc----EEEEEEEecCCCCCc------eeEEEEEEe--------
Confidence 45788888888887777621122334456778864444 555432221111000 002222332
Q ss_pred hhhhhcCCCCCCcceecC----CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 296 ELELKESSSEDLPVVNLT----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt----~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
...+.+++. .-...+...++||+.++|+..-.+. .|.++|...+..+.. ..
T Consensus 244 ---------~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg-----------SiiLyD~~~~~t~~~-ka---- 298 (545)
T PF11768_consen 244 ---------SRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG-----------SIILYDTTRGVTLLA-KA---- 298 (545)
T ss_pred ---------ecCceeEEEEEEEecCCcceEEecCcccceEEEEecCC-----------eEEEEEcCCCeeeee-ee----
Confidence 112222221 2234577889999999998877663 488888765433211 00
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
.| .+..++|.|||. +++..+..|...+|-+-+..=+.+.+
T Consensus 299 ----------~~------~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 299 ----------EF------IPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred ----------cc------cceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeec
Confidence 11 135678999998 55555556666666444433333333
No 482
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=91.56 E-value=0.9 Score=43.72 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=48.5
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHH-HHHHHHcCCCCCCeEEEEEcChhHHHHHH
Q 004141 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPSKVTVVGGSHGGFLTTH 632 (771)
Q Consensus 554 ~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 632 (771)
.|......+. ..+.|+.++++|.. ... ......+++... ++.+... ....++.++|||+||.++..
T Consensus 14 ~~~~~~~~l~-~~~~v~~~~~~g~~---~~~-------~~~~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a~~ 80 (212)
T smart00824 14 EYARLAAALR-GRRDVSALPLPGFG---PGE-------PLPASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLAHA 80 (212)
T ss_pred HHHHHHHhcC-CCccEEEecCCCCC---CCC-------CCCCCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHHHH
Confidence 4555566664 46899999998842 210 111123333332 2233322 23457999999999999988
Q ss_pred HHhh---CCCceeEEEecCC
Q 004141 633 LIGQ---APDKFVAAAARNP 649 (771)
Q Consensus 633 ~a~~---~p~~~~~~v~~~p 649 (771)
++.+ .+..+..+++..+
T Consensus 81 ~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 81 VAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred HHHHHHhCCCCCcEEEEEcc
Confidence 8775 3445666665543
No 483
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=91.49 E-value=0.36 Score=51.62 Aligned_cols=111 Identities=19% Similarity=0.159 Sum_probs=59.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-----------------HHHHHHHCCcEEEEECCCCCCCCChh
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----------------SLAFLSSVGYSLLIVNYRGSLGFGEE 583 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-----------------~~~~la~~G~~Vv~~d~rG~~~~g~~ 583 (771)
+..|.+.+++ ...++|+|+++.|||+.+....... ...-+... -.+|-+|.+-.+||..+
T Consensus 87 ~ffy~fe~~n--dp~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a 163 (498)
T COG2939 87 FFFYTFESPN--DPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRA 163 (498)
T ss_pred EEEEEecCCC--CCCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCcccc
Confidence 5566666542 5668999999999998753211110 00011111 35677775544556554
Q ss_pred hhhcCCCCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHh
Q 004141 584 ALQSLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 584 ~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
.......+ ....-+|+..+.+.+.+. ..-...+.+|+|.|+||+-+..+|.
T Consensus 164 ~~~e~~~d-~~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~ 217 (498)
T COG2939 164 LGDEKKKD-FEGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAH 217 (498)
T ss_pred cccccccc-hhccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHH
Confidence 11111111 111234555555444332 1112247899999999998887775
No 484
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.47 E-value=2.4 Score=41.90 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=72.2
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEE--EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVV--WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~--wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..|..+|+.+|+...-..... ...... -.++++. +++.. ....|+.+|+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~----v~~~~---------------~~~~l~~~d~-------- 53 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGP--GIGGPVATAVPDGGR----VYVAS---------------GDGNLYALDA-------- 53 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSS--SCSSEEETEEEETTE----EEEEE---------------TTSEEEEEET--------
T ss_pred CEEEEEECCCCCEEEEEECCC--CCCCccceEEEeCCE----EEEEc---------------CCCEEEEEEC--------
Confidence 578899998887654421211 123333 3446664 54442 3348999997
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
.+|+...-.........+. ..++..|++...+ .+|+.+|..+|+..-. ..
T Consensus 54 ---------~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~-----------~~l~~~d~~tG~~~W~---------~~ 103 (238)
T PF13360_consen 54 ---------KTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSD-----------GSLYALDAKTGKVLWS---------IY 103 (238)
T ss_dssp ---------TTSEEEEEEECSSCGGSGE-EEETTEEEEEETT-----------SEEEEEETTTSCEEEE---------EE
T ss_pred ---------CCCCEEEEeecccccccee-eecccccccccce-----------eeeEecccCCcceeee---------ec
Confidence 6666432222222222222 3345556655522 2699999888775210 00
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
.... .... .........+++.+++... ...|+.+|+++|++.
T Consensus 104 ~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 104 LTSS-PPAG-----VRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLL 145 (238)
T ss_dssp E-SS-CTCS-----TB--SEEEEETTEEEEEET---CSEEEEEETTTTEEE
T ss_pred cccc-cccc-----cccccCceEecCEEEEEec---cCcEEEEecCCCcEE
Confidence 0000 0000 0112233334666766543 467999999999874
No 485
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=16 Score=42.87 Aligned_cols=74 Identities=16% Similarity=0.068 Sum_probs=40.9
Q ss_pred CccccCCC-EEEEEeeeCC-eeEEEEEECCCC-cEEEecCCCCCc-eeeEEeecCCEEEEEEeCC-CCCCeEEEEEecc
Q 004141 394 NPWLSDGC-TMLLSSIWGS-SQVIISVNVSSG-ELLRITPAESNF-SWSLLTLDGDNIIAVSSSP-VDVPQVKYGYFVD 467 (771)
Q Consensus 394 ~~~s~Dg~-~l~~~~~~~~-~~~l~~~d~~tg-~~~~l~~~~~~~-~~~~~s~dg~~l~~~~~~~-~~p~~l~~~~~~~ 467 (771)
+.++.|+. .+++.....+ ..++..+....+ ....++.+...+ ....++.+.+.++|.+... -+-..+|.+++..
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~ 423 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGS 423 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEccc
Confidence 45666764 3333333344 566777776666 556666554422 2334456778888877553 2334456555543
No 486
>PF03283 PAE: Pectinacetylesterase
Probab=91.21 E-value=0.14 Score=53.75 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHh
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
...+.+++++|..++.-++++|.|.|.|+||+.++..+-
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 456778899999886677899999999999999987654
No 487
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=91.10 E-value=0.37 Score=52.76 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=46.6
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC-CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH
Q 004141 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG-KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH 632 (771)
Q Consensus 554 ~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~-~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 632 (771)
.|..+++.|+..||. -.+++|. .-+|+..... +....-+..+...|+.+.+.. ..++|+|+||||||.+++.
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~gA---PYDWRls~~~le~rd~YF~rLK~lIE~ay~~n--ggkKVVLV~HSMGglv~ly 229 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYMA---AYDWRLSFQNTEVRDQTLSRLKSNIELMVATN--GGKKVVVVPHSMGVLYFLH 229 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceeec---ccccccCccchhhhhHHHHHHHHHHHHHHHHc--CCCeEEEEEeCCchHHHHH
Confidence 356789999999997 5666663 3344432110 000111334455555554431 2578999999999999998
Q ss_pred HHh
Q 004141 633 LIG 635 (771)
Q Consensus 633 ~a~ 635 (771)
++.
T Consensus 230 FL~ 232 (642)
T PLN02517 230 FMK 232 (642)
T ss_pred HHH
Confidence 775
No 488
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=90.83 E-value=6.8 Score=39.35 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=67.7
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
....|+++|+.+++...-. ......+..+.+.|+..+ |+..+.+ +..|.++++
T Consensus 113 ~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~q----lvls~Sk--------------D~svRlwnI-------- 165 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQ----LVLSASK--------------DHSVRLWNI-------- 165 (385)
T ss_pred ceeEEEEEecchhhhccce-eccCccchhhhcCCCCCc----EEEEecC--------------CceEEEEec--------
Confidence 4589999999888754331 344557888899999988 7776632 235677776
Q ss_pred hhhhhcCCCCCCcceecCC----CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 296 ELELKESSSEDLPVVNLTE----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~----~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.+.....+.. +...+.+..||+||.+|+-...+. +|.+|+++..+
T Consensus 166 ---------~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh-----------slk~W~l~~~~ 214 (385)
T KOG1034|consen 166 ---------QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH-----------SLKLWRLNVKE 214 (385)
T ss_pred ---------cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc-----------eEEEEecChhH
Confidence 5565555443 344688999999999988766654 46677666443
No 489
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=90.83 E-value=0.93 Score=36.63 Aligned_cols=68 Identities=9% Similarity=-0.021 Sum_probs=45.0
Q ss_pred cccCCCEEEEEeee---------------CCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeE
Q 004141 396 WLSDGCTMLLSSIW---------------GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQV 460 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~---------------~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l 460 (771)
..+|+..|||+.+. ....+|+++|+.|++.+.|..+-......++++|++.++++.. ...+|
T Consensus 5 v~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et---~~~Ri 81 (89)
T PF03088_consen 5 VDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET---GRYRI 81 (89)
T ss_dssp E-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG---GGTEE
T ss_pred EecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec---cCceE
Confidence 45564457776642 3456899999999999888766555567899999999988774 44567
Q ss_pred EEEEec
Q 004141 461 KYGYFV 466 (771)
Q Consensus 461 ~~~~~~ 466 (771)
.++.+.
T Consensus 82 ~rywl~ 87 (89)
T PF03088_consen 82 LRYWLK 87 (89)
T ss_dssp EEEESS
T ss_pred EEEEEe
Confidence 666654
No 490
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=90.82 E-value=25 Score=37.34 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=86.7
Q ss_pred ceEEEEEccC--CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 218 PSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..+.+|+..+ .....+ ......+..+.|+|+++. ++..+. ....+..+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~-------- 185 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTL--EGHSESVTSLAFSPDGKL----LASGSS--------------LDGTIKLWDL-------- 185 (466)
T ss_pred ccEEEEEecCCCeEEEEE--ecCcccEEEEEECCCCCE----EEecCC--------------CCCceEEEEc--------
Confidence 5788888876 344444 334445668999999986 655531 1235777776
Q ss_pred hhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 296 ELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
..+ ....+..+...+....|+|+|+.++.....+ ..|..||...+..... .
T Consensus 186 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d----------~~i~~wd~~~~~~~~~---------~ 237 (466)
T COG2319 186 ---------RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD----------GTIRLWDLSTGKLLRS---------T 237 (466)
T ss_pred ---------CCCceEEeeccCCCceEEEEEcCCcceEEEEecCC----------CcEEEEECCCCcEEee---------e
Confidence 332 3334444566788899999998333331221 2344556553222110 0
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEE
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIA 449 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~ 449 (771)
+ .+.. ... ...|++++..+ +....++...+|.+.........+......+....+.+++..++.
T Consensus 238 ~--------~~~~-~~~-~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 238 L--------SGHS-DSV-VSSFSPDGSLL-ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred c--------CCCC-cce-eEeECCCCCEE-EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 0 0000 000 11689999544 455556666666554322213333122233444567777776666
No 491
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.63 E-value=24 Score=36.87 Aligned_cols=146 Identities=15% Similarity=0.160 Sum_probs=77.9
Q ss_pred eEEEeCCCCCeEEEEecCC---CCCCeEEEEecCCcceEEEecCCcc----c--ccccCCCcccceeecCCCCeEEEEec
Q 004141 102 SAVVPSPSGSKLLVVRNPE---NESPIQFELWSQSQLEKEFHVPQTV----H--GSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~--g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
...++.++|... +..+.. .....|+.+..+|...+.+.++... . ...-.+..|.+++++|||+.|+.+.+
T Consensus 88 Egi~~~~~g~~~-is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 88 EGIAVPPDGSFW-ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred hHeEEecCCCEE-EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 345666777644 333321 1226788888556665544443322 1 23345567889999999998888766
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc------eeeccCCC---CCCccc
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE------VQAVKGIP---KSLSVG 243 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~------~~~l~~~~---~~~~~~ 243 (771)
....... . ...........|+.+|..+.. ..++...+ ....+.
T Consensus 167 ~~l~~d~----------~------------------~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~is 218 (326)
T PF13449_consen 167 SPLKQDG----------P------------------RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGIS 218 (326)
T ss_pred ccccCCC----------c------------------ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCce
Confidence 5421100 0 000001123567777776522 12221000 456788
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004141 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
.+.+-+|++- |+.-..... + .....+||.+++.
T Consensus 219 d~~al~d~~l----LvLER~~~~----~----~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 219 DIAALPDGRL----LVLERDFSP----G----TGNYKRIYRVDLS 251 (326)
T ss_pred eEEEECCCcE----EEEEccCCC----C----ccceEEEEEEEcc
Confidence 8999999985 554321110 0 1233489999973
No 492
>PLN02454 triacylglycerol lipase
Probab=90.45 E-value=0.76 Score=48.53 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC--------CCceeEEEecCCcc
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~p~~ 651 (771)
.+++...|+.+++...-..-+|.+.|||+||.+|+.+|... ...+.+++..+|-+
T Consensus 209 r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di~~~g~~~~~~~V~~~TFGsPRV 271 (414)
T PLN02454 209 RSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDIVENGVSGADIPVTAIVFGSPQV 271 (414)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHHHHhcccccCCceEEEEeCCCcc
Confidence 56777888888776432223599999999999999887531 11245666666754
No 493
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=90.17 E-value=7.5 Score=40.33 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=80.6
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC----ccceEEEecCCCCCccEEEEEeecCc-cee--eeee
Q 004141 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL----SVGQVVWAPLNEGLHQYLVFVGWSSE-TRK--LGIK 273 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~----~~~~~~wspDg~~~~~~l~~~~~~~~-~~~--~g~~ 273 (771)
...|....|+.++....--|++++.+++..+.+. .+.+. -..++...++|. |+|+..... .+| .-..
T Consensus 119 Gl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~-~~~~G~~~kf~N~ldI~~~g~-----vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 119 GIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLA-DEAEGKPFKFLNDLDIDPEGV-----VYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred eEEeccCCCeEEEEecceeeEEECCCCCcceecc-ccccCeeeeecCceeEcCCCe-----EEEeccccccchhheEEee
Confidence 3456666667777777788888898998877773 11111 234667788554 777543221 111 1112
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccccccee
Q 004141 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 353 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~ 353 (771)
.+-....+++.+|. .+...+.|-+.-......+.|||++.++|..... .+|.+
T Consensus 193 l~g~~~GRl~~YD~-----------------~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~----------~ri~r 245 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDP-----------------STKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT----------ARIKR 245 (376)
T ss_pred ecCCCccceEEecC-----------------cccchhhhhhcccccccccCCCCCCEEEEEeecc----------ceeee
Confidence 22335568899986 6677777777777788899999999998887543 45666
Q ss_pred eecCCC
Q 004141 354 IDWPTN 359 (771)
Q Consensus 354 ~d~~~~ 359 (771)
+-+++.
T Consensus 246 ywi~g~ 251 (376)
T KOG1520|consen 246 YWIKGP 251 (376)
T ss_pred eEecCC
Confidence 655543
No 494
>PLN02633 palmitoyl protein thioesterase family protein
Probab=89.92 E-value=2.9 Score=42.31 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=57.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.+.| +|+.||-+............+.+.+ -|.-+.++..-. + ... .+.....+.+..+-+.|.+.+..
T Consensus 24 ~~~P-~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~ig~-~-----~~~----s~~~~~~~Qve~vce~l~~~~~l 92 (314)
T PLN02633 24 VSVP-FIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEIGN-G-----VGD----SWLMPLTQQAEIACEKVKQMKEL 92 (314)
T ss_pred CCCC-eEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEECC-C-----ccc----cceeCHHHHHHHHHHHHhhchhh
Confidence 3456 5667997655444455556666644 256665554321 1 111 11111223333333333332222
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCC--ceeEEEecCC
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 649 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~p 649 (771)
.+-+-++|+|.||.++-.++.+.|+ .++..|..++
T Consensus 93 -~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 93 -SQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred -hCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 2348999999999999999998876 3676665553
No 495
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=89.91 E-value=0.57 Score=46.23 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-----CCceeEEEecCCcc
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLC 651 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~p~~ 651 (771)
+++...+..++++. ...+|.+.|||+||.+|..++... +..+.+....+|.+
T Consensus 112 ~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~v 168 (229)
T cd00519 112 NQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRV 168 (229)
T ss_pred HHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCC
Confidence 34445555444442 356899999999999999877642 33466666666654
No 496
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.86 E-value=13 Score=38.06 Aligned_cols=58 Identities=10% Similarity=0.209 Sum_probs=29.5
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCC----CcEEEecCCCCCcee-eEEeecC---CEEEEEEeC
Q 004141 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSS----GELLRITPAESNFSW-SLLTLDG---DNIIAVSSS 453 (771)
Q Consensus 393 ~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~t----g~~~~l~~~~~~~~~-~~~s~dg---~~l~~~~~~ 453 (771)
.....++|. |||+.- ....|+.++..+ .+.+.|..+.....+ ..++.+. +.|++.++.
T Consensus 190 g~~~D~~G~-ly~~~~--~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 190 GMAIDPNGN-LYFTDV--EQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEEETTTE-EEEEEC--CCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred eEEECCCCc-EEEecC--CCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 345566664 666554 344688888765 355666554442222 3444444 566666643
No 497
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=89.51 E-value=3.8 Score=42.95 Aligned_cols=85 Identities=20% Similarity=0.148 Sum_probs=52.8
Q ss_pred cCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 216 RQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.++.|.+|.+......... -.|+ .+..++=+|+|.. |+-.+ -...||++.+
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg--~v~al~s~n~G~~----l~ag~---------------i~g~lYlWel------- 110 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPG--PVHALASSNLGYF----LLAGT---------------ISGNLYLWEL------- 110 (476)
T ss_pred cCccccccccCchhhhhhhccccc--ceeeeecCCCceE----EEeec---------------ccCcEEEEEe-------
Confidence 4567777776544321110 0222 2445677888885 55432 1227888888
Q ss_pred hhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCC
Q 004141 295 SELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+|.. ..+..+-..+...+||-||+.|+..+.+.
T Consensus 111 ----------ssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 111 ----------SSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred ----------ccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc
Confidence 66764 45555666788999999999887666553
No 498
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=89.50 E-value=0.87 Score=45.52 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=85.9
Q ss_pred cccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004141 210 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
-.+.+..+..+.+||+++|++.... +..-..+-.+.|+- .. ++..+. ++...+|.++.
T Consensus 249 viisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~n--g~----mvtcSk-------------DrsiaVWdm~s-- 306 (499)
T KOG0281|consen 249 VIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFSN--GY----MVTCSK-------------DRSIAVWDMAS-- 306 (499)
T ss_pred EEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEeC--CE----EEEecC-------------CceeEEEeccC--
Confidence 4456678899999999999876552 33333455667762 22 444441 22234554443
Q ss_pred ccchhhhhhhhcCCCCCC-c-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004141 290 YKSEASELELKESSSEDL-P-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~-~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
.+. . .+.|..+...+..+.|+ .|+|+-.+.+. .|.+|+..+.+..+...+
T Consensus 307 ---------------ps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDR-----------TikvW~~st~efvRtl~g 358 (499)
T KOG0281|consen 307 ---------------PTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR-----------TIKVWSTSTCEFVRTLNG 358 (499)
T ss_pred ---------------chHHHHHHHHhhhhhheeeeccc--cceEEEecCCc-----------eEEEEeccceeeehhhhc
Confidence 111 1 23455566667777774 57888777553 488899888776443322
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004141 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
. -.|+- +.--.|+ ++++.+.+...+|| |+..|..-++..+..
T Consensus 359 H--------------kRGIA-------ClQYr~r-lvVSGSSDntIRlw--di~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 359 H--------------KRGIA-------CLQYRDR-LVVSGSSDNTIRLW--DIECGACLRVLEGHE 400 (499)
T ss_pred c--------------cccce-------ehhccCe-EEEecCCCceEEEE--eccccHHHHHHhchH
Confidence 2 11211 2222454 66777666666666 666787666655443
No 499
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.48 E-value=35 Score=37.19 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=16.4
Q ss_pred eEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004141 438 SLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 438 ~~~s~dg~~l~~~~~~~~~p~~l~~~~ 464 (771)
..|++ .+.|++.-.++..+-+|.++.
T Consensus 235 la~dp-~G~Lw~~e~Gp~~~DEiN~I~ 260 (454)
T TIGR03606 235 LAFTP-DGTLYASEQGPNSDDELNIIV 260 (454)
T ss_pred eEECC-CCCEEEEecCCCCCcEEEEec
Confidence 34556 345777777777777766654
No 500
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=89.41 E-value=0.86 Score=45.47 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=45.9
Q ss_pred CCCCcEEEEEcCCCCCCCCC-cchHHHHHHH--HCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHH-HHHHH
Q 004141 534 CSCDPLIVVLHGGPHSVSLS-SYSKSLAFLS--SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVID 609 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la--~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~ 609 (771)
..+.| ||+.||-+.+.... .+......+. --|.-|.+++.-. + ...+..+... ..+.+..+.+ +.+.+
T Consensus 3 ~~~~P-vViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig~-~-~~~D~~~s~f-----~~v~~Qv~~vc~~l~~ 74 (279)
T PF02089_consen 3 PSPLP-VVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIGN-D-PSEDVENSFF-----GNVNDQVEQVCEQLAN 74 (279)
T ss_dssp TSS---EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SSS-S-HHHHHHHHHH-----SHHHHHHHHHHHHHHH
T ss_pred CCCCc-EEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEECC-C-cchhhhhhHH-----HHHHHHHHHHHHHHhh
Confidence 34556 66779966543222 3333333322 2477777776522 1 0011111111 1133333333 33333
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHhhCCC-ceeEEEecCC
Q 004141 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 649 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~p 649 (771)
.+.+. +-+.++|+|.||.+.-.++.+.++ .++-.|..++
T Consensus 75 ~p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 75 DPELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp -GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred Chhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 33232 469999999999999999988764 4666666553
Done!