BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004147
(771 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T7A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp At Ph 5.2
pdb|3T9A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp At Ph 7.0
pdb|3T9B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp At Ph 5.2
pdb|3T9C|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp And Inositol Hexakisphosphate
(Ip6)
pdb|3T9D|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp And 5- (Pp)-Ip5 (5-Ip7)
pdb|3T9E|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp, 5-(Pp)-Ip5 (5-Ip7) And Mgf3
(Transition State Mimic)
pdb|3T9F|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp And 1,5- (Pp)2-Ip4 (1,5-Ip8)
pdb|4HN2|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Amppnp And A Substrate Analog 5pa-Ip5
Length = 330
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/328 (56%), Positives = 241/328 (73%), Gaps = 7/328 (2%)
Query: 3 VHKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIA 62
++I +G+C M KK S PM +IL+R+ F V+ F ++VIL +P+E WP+CDCLI+
Sbjct: 4 TERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLIS 63
Query: 63 FYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVP 122
F+S G+PL+KA +YA LR PF++N+L Q+L+ DRR+VY L+ GI +PRYA++NR+
Sbjct: 64 FHSKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPN 123
Query: 123 YQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRS 182
+ IE ED VEV+G F KPFVEKPV +DH++ IYYP+SAGGG + LFRK+G+RS
Sbjct: 124 NPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRS 183
Query: 183 SEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGK 242
S + P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GK
Sbjct: 184 SVYSPE-SNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGK 242
Query: 243 EVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDA 302
EVRYPV+L EK +A +VC+AF+Q VCGFDLLR G+SYVCDVNG+SFVKNS KYYDD
Sbjct: 243 EVRYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDC 302
Query: 303 ACVLRKMFLEAKAPHLSSAIPPILPWKV 330
A +L + + AP +PW +
Sbjct: 303 AKILGNIVMRELAPQFH------IPWSI 324
>pdb|3T54|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Atp And Cadmium
pdb|3T99|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Diphosphoinositol Pentakisphosphate Kinase 2 (Ppip5k2)
In Complex With Adp And In The Absence Of Cadmium At Ph
7.0
Length = 334
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/326 (56%), Positives = 241/326 (73%), Gaps = 7/326 (2%)
Query: 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFY 64
++I +G+C M KK S PM +IL+R+ F V+ F ++VIL +P+E WP+CDCLI+F+
Sbjct: 10 RQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFH 69
Query: 65 SSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQ 124
S G+PL+KA +YA LR PF++N+L Q+L+ DRR+VY L+ GI +PRYA++NR+
Sbjct: 70 SKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNP 129
Query: 125 ELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSE 184
+ IE ED VEV+G F KPFVEKPV +DH++ IYYP+SAGGG + LFRK+G+RSS
Sbjct: 130 KECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSV 189
Query: 185 FHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244
+ P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKEV
Sbjct: 190 YSPE-SNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEV 248
Query: 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAAC 304
RYPV+L EK +A +VC+AF+Q VCGFDLLR G+SYVCDVNG+SFVKNS KYYDD A
Sbjct: 249 RYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAK 308
Query: 305 VLRKMFLEAKAPHLSSAIPPILPWKV 330
+L + + AP +PW +
Sbjct: 309 ILGNIVMRELAPQFH------IPWSI 328
>pdb|2O3I|A Chain A, X-Ray Crystal Structure Of Protein Cv_3147 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr68.
pdb|2O3I|B Chain B, X-Ray Crystal Structure Of Protein Cv_3147 From
Chromobacterium Violaceum. Northeast Structural Genomics
Consortium Target Cvr68
Length = 405
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 487 QFYQDNGVNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSS-DEGRVQMSAAA--FAKGLL 543
QF Q G +A W S ++ G L + T LK+ + +G+V+ + A F + L
Sbjct: 199 QFGQFGG---LAXWXXSPAQLGGALPVRGTLSRALKLGRALQDGKVKTAEAXLDFLRREL 255
Query: 544 DLEGQLTPILVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKM 591
D++G+L +L S + S G D + +E+ + R + ++ S +
Sbjct: 256 DIKGKLLFGPATLASPEVSTAGGFDLGKVVLEDGERRCTVLYQNESLL 303
>pdb|4DY0|A Chain A, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY0|B Chain B, Crystal Structure Of Native Protease Nexin-1 With Heparin
pdb|4DY7|C Chain C, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|F Chain F, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 379
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 141 NRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIY 200
N W F+E P HG+ S++I P+ + + + + ++ + + V + I
Sbjct: 216 NDLWYNFIELPYHGESISMLIALPTESSTPLSAIIPHISTKTIDSWMSI-MVPKRVQVIL 274
Query: 201 EEFMPTGGTDVK 212
+F TD+K
Sbjct: 275 PKFTAVAQTDLK 286
>pdb|1QMN|A Chain A, Alpha1-Antichymotrypsin Serpin In The Delta Conformation
(Partial Loop Insertion)
Length = 401
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 513 LHSTYRHDLKIY--SSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNA 570
+H +++H L+ SSDE ++ M A F K L L + T L ++ D D+A
Sbjct: 93 IHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSA 152
Query: 571 SIEMEEAKARLNEIIKSGSK 590
+ AK +N+ +K+G++
Sbjct: 153 A-----AKKLINDYVKNGTR 167
>pdb|3DLW|A Chain A, Antichymotrypsin
Length = 411
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 513 LHSTYRHDLKIY--SSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNA 570
+H +++H L+ SSDE ++ M A F K L L + T L ++ D D+A
Sbjct: 103 IHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSA 162
Query: 571 SIEMEEAKARLNEIIKSGSK 590
+ AK +N+ +K+G++
Sbjct: 163 A-----AKKLINDYVKNGTR 177
>pdb|2ACH|A Chain A, Crystal Structure Of Cleaved Human Alpha1-antichymotrypsin
At 2.7 Angstroms Resolution And Its Comparison With
Other Serpins
Length = 360
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 513 LHSTYRHDLKIY--SSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNA 570
+H +++H L+ SSDE ++ M A F K L L + T L ++ D D+A
Sbjct: 92 IHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSA 151
Query: 571 SIEMEEAKARLNEIIKSGSK 590
+ AK +N+ +K+G++
Sbjct: 152 A-----AKKLINDYVKNGTR 166
>pdb|3CAA|A Chain A, Cleaved Antichymotrypsin A347r
Length = 341
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 513 LHSTYRHDLKIY--SSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNA 570
+H +++H L+ SSDE ++ M A F K L L + T L ++ D D+A
Sbjct: 73 IHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSA 132
Query: 571 SIEMEEAKARLNEIIKSGSK 590
+ AK +N+ +K+G++
Sbjct: 133 A-----AKKLINDYVKNGTR 147
>pdb|1AS4|A Chain A, Cleaved Antichymotrypsin A349r
Length = 341
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 513 LHSTYRHDLKIY--SSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNA 570
+H +++H L+ SSDE ++ M A F K L L + T L ++ D D+A
Sbjct: 73 IHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSA 132
Query: 571 SIEMEEAKARLNEIIKSGSK 590
+ AK +N+ +K+G++
Sbjct: 133 A-----AKKLINDYVKNGTR 147
>pdb|4CAA|A Chain A, Cleaved Antichymotrypsin T345r
Length = 341
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 513 LHSTYRHDLKIY--SSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLDGLDNA 570
+H +++H L+ SSDE ++ M A F K L L + T L ++ D D+A
Sbjct: 73 IHQSFQHLLRTLNQSSDELQLSMGNAMFVKEQLSLLDRFTEDAKRLYGSEAFATDFQDSA 132
Query: 571 SIEMEEAKARLNEIIKSGSK 590
+ AK +N+ +K+G++
Sbjct: 133 A-----AKKLINDYVKNGTR 147
>pdb|2Z2A|A Chain A, Thr109gly Dihydroorotase From E. Coli
pdb|2Z2A|B Chain B, Thr109gly Dihydroorotase From E. Coli
Length = 347
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 100 VYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE 137
V E++EK G+P+ LV+ EV + ++D F E F+E
Sbjct: 125 VLERMEKIGMPL----LVHGEVTHADIDIFDREARFIE 158
>pdb|1XGE|A Chain A, Dihydroorotase From Escherichia Coli: Loop Movement And
Cooperativity Between Subunits
pdb|1XGE|B Chain B, Dihydroorotase From Escherichia Coli: Loop Movement And
Cooperativity Between Subunits
pdb|2EG6|A Chain A, The Crystal Structure Of The Ligand-free Dihydroorotase
From E. Coli
pdb|2EG6|B Chain B, The Crystal Structure Of The Ligand-free Dihydroorotase
From E. Coli
pdb|2EG7|A Chain A, The Crystal Structure Of E. Coli Dihydroorotase Complexed
With Hddp
pdb|2EG7|B Chain B, The Crystal Structure Of E. Coli Dihydroorotase Complexed
With Hddp
pdb|2EG8|A Chain A, The Crystal Structure Of E. Coli Dihydroorotase Complexed
With 5- Fluoroorotic Acid
pdb|2EG8|B Chain B, The Crystal Structure Of E. Coli Dihydroorotase Complexed
With 5- Fluoroorotic Acid
Length = 347
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 100 VYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE 137
V E++EK G+P+ LV+ EV + ++D F E F+E
Sbjct: 125 VLERMEKIGMPL----LVHGEVTHADIDIFDREARFIE 158
>pdb|2Z29|A Chain A, Thr109ala Dihydroorotase From E. Coli
pdb|2Z29|B Chain B, Thr109ala Dihydroorotase From E. Coli
Length = 347
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 100 VYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE 137
V E++EK G+P+ LV+ EV + ++D F E F+E
Sbjct: 125 VLERMEKIGMPL----LVHGEVTHADIDIFDREARFIE 158
>pdb|2Z26|A Chain A, Thr110ala Dihydroorotase From E. Coli
pdb|2Z26|B Chain B, Thr110ala Dihydroorotase From E. Coli
Length = 347
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 100 VYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE 137
V E++EK G+P+ LV+ EV + ++D F E F+E
Sbjct: 125 VLERMEKIGMPL----LVHGEVTHADIDIFDREARFIE 158
>pdb|2Z24|A Chain A, Thr110ser Dihydroorotase From E. Coli
pdb|2Z24|B Chain B, Thr110ser Dihydroorotase From E. Coli
Length = 347
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 100 VYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE 137
V E++EK G+P+ LV+ EV + ++D F E F+E
Sbjct: 125 VLERMEKIGMPL----LVHGEVTHADIDIFDREARFIE 158
>pdb|2E25|A Chain A, The Crystal Structure Of The T109s Mutant Of E. Coli
Dihydroorotase Complexed With An Inhibitor
5-fluoroorotate
pdb|2Z27|A Chain A, Thr109ser Dihydroorotase From E. Coli
pdb|2Z27|B Chain B, Thr109ser Dihydroorotase From E. Coli
Length = 347
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 100 VYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE 137
V E++EK G+P+ LV+ EV + ++D F E F+E
Sbjct: 125 VLERMEKIGMPL----LVHGEVTHADIDIFDREARFIE 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,189,429
Number of Sequences: 62578
Number of extensions: 1004205
Number of successful extensions: 2288
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2284
Number of HSP's gapped (non-prelim): 24
length of query: 771
length of database: 14,973,337
effective HSP length: 106
effective length of query: 665
effective length of database: 8,340,069
effective search space: 5546145885
effective search space used: 5546145885
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)