Query 004147
Match_columns 771
No_of_seqs 189 out of 444
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 18:22:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1057 Arp2/3 complex-interac 100.0 1E-257 3E-262 2117.0 53.5 720 4-770 38-769 (1018)
2 COG0189 RimK Glutathione synth 100.0 4.8E-29 1E-33 266.5 14.5 255 12-295 34-294 (318)
3 PF08443 RimK: RimK-like ATP-g 99.9 1.9E-28 4.2E-33 242.0 7.1 171 95-295 2-174 (190)
4 PLN02941 inositol-tetrakisphos 99.9 1.6E-24 3.6E-29 232.7 20.7 266 4-309 19-323 (328)
5 PRK10446 ribosomal protein S6 99.9 1.2E-24 2.6E-29 228.4 17.9 249 8-290 2-265 (300)
6 TIGR00768 rimK_fam alpha-L-glu 99.9 3.4E-23 7.4E-28 210.6 16.2 246 9-290 2-256 (277)
7 TIGR02144 LysX_arch Lysine bio 99.9 8.5E-23 1.8E-27 209.9 15.8 235 22-290 11-254 (280)
8 PRK05246 glutathione synthetas 99.9 2.1E-22 4.5E-27 213.8 12.5 198 53-289 76-285 (316)
9 TIGR01380 glut_syn glutathione 99.9 4.5E-22 9.8E-27 211.5 12.1 199 52-289 74-284 (312)
10 PRK12458 glutathione synthetas 99.8 7.5E-21 1.6E-25 204.7 12.3 174 77-287 110-295 (338)
11 TIGR02291 rimK_rel_E_lig alpha 99.8 5.4E-18 1.2E-22 181.9 13.5 185 84-292 25-272 (317)
12 TIGR03103 trio_acet_GNAT GNAT- 99.7 3.6E-18 7.8E-23 194.6 10.1 178 84-292 285-524 (547)
13 PRK01372 ddl D-alanine--D-alan 99.7 8.4E-16 1.8E-20 160.5 21.3 247 6-290 4-270 (304)
14 PRK14016 cyanophycin synthetas 99.7 5.5E-17 1.2E-21 190.4 10.9 183 84-296 202-453 (727)
15 TIGR02068 cya_phycin_syn cyano 99.7 1E-16 2.2E-21 191.1 10.4 175 86-290 203-446 (864)
16 PRK02471 bifunctional glutamat 99.6 9.6E-16 2.1E-20 180.4 13.0 184 83-292 475-728 (752)
17 PF00328 His_Phos_2: Histidine 99.6 2.5E-14 5.4E-19 148.3 12.7 250 355-768 1-274 (347)
18 TIGR01435 glu_cys_lig_rel glut 99.5 2.1E-14 4.5E-19 168.3 11.0 178 85-290 464-712 (737)
19 PRK14571 D-alanyl-alanine synt 99.5 4.7E-13 1E-17 140.7 19.1 243 18-299 16-274 (299)
20 TIGR01205 D_ala_D_alaTIGR D-al 99.5 2.9E-13 6.4E-18 142.0 17.4 208 56-289 63-284 (315)
21 PRK14569 D-alanyl-alanine synt 99.5 7E-13 1.5E-17 140.0 16.8 246 6-290 3-265 (296)
22 PF02955 GSH-S_ATP: Prokaryoti 99.5 4.7E-14 1E-18 140.2 6.2 145 111-290 12-162 (173)
23 PRK06849 hypothetical protein; 99.4 4.7E-12 1E-16 137.7 14.2 194 57-287 77-273 (389)
24 PRK14572 D-alanyl-alanine synt 99.3 1.5E-11 3.4E-16 132.7 16.1 190 72-290 105-315 (347)
25 PRK12767 carbamoyl phosphate s 99.3 6.8E-12 1.5E-16 132.1 12.6 193 57-288 70-268 (326)
26 TIGR01142 purT phosphoribosylg 99.3 1E-11 2.2E-16 133.9 13.7 193 57-287 63-269 (380)
27 PRK01966 ddl D-alanyl-alanine 99.3 1.7E-11 3.7E-16 131.5 14.7 206 56-289 81-300 (333)
28 PRK14568 vanB D-alanine--D-lac 99.3 1.3E-10 2.8E-15 125.3 18.8 199 56-288 90-308 (343)
29 PRK14570 D-alanyl-alanine synt 99.3 1E-10 2.2E-15 127.9 16.8 192 72-289 104-315 (364)
30 PRK13790 phosphoribosylamine-- 99.2 8.8E-11 1.9E-15 128.5 12.9 190 72-288 42-248 (379)
31 TIGR01161 purK phosphoribosyla 99.2 2.8E-10 6E-15 122.4 14.2 194 57-288 61-263 (352)
32 PF13535 ATP-grasp_4: ATP-gras 99.2 1.2E-10 2.7E-15 111.2 10.3 162 93-288 1-177 (184)
33 PF05770 Ins134_P3_kin: Inosit 99.1 3.8E-10 8.3E-15 121.3 11.9 259 4-301 5-300 (307)
34 PRK09288 purT phosphoribosylgl 99.1 4.4E-10 9.5E-15 121.9 11.7 197 57-288 76-283 (395)
35 PRK00885 phosphoribosylamine-- 99.1 5.2E-10 1.1E-14 123.2 11.9 190 74-288 79-286 (420)
36 PRK07206 hypothetical protein; 99.1 1.7E-09 3.8E-14 118.2 14.7 207 57-287 71-285 (416)
37 PRK06019 phosphoribosylaminoim 99.0 2.4E-09 5.2E-14 116.7 14.6 206 56-301 63-276 (372)
38 PRK05586 biotin carboxylase; V 99.0 6.2E-09 1.3E-13 116.0 13.9 205 55-289 73-292 (447)
39 PRK08463 acetyl-CoA carboxylas 99.0 5E-09 1.1E-13 118.2 13.2 204 57-289 74-292 (478)
40 PRK02186 argininosuccinate lya 99.0 4.1E-09 8.9E-14 126.9 13.1 202 51-288 65-275 (887)
41 PRK05294 carB carbamoyl phosph 98.9 1E-08 2.2E-13 125.7 15.8 195 57-288 630-839 (1066)
42 PRK08654 pyruvate carboxylase 98.9 3.3E-09 7.1E-14 120.6 9.7 204 57-289 75-291 (499)
43 PF02655 ATP-grasp_3: ATP-gras 98.9 2.5E-09 5.4E-14 104.0 7.4 149 94-287 1-155 (161)
44 PRK08462 biotin carboxylase; V 98.9 2.9E-09 6.2E-14 118.2 8.8 197 57-288 77-293 (445)
45 PRK07178 pyruvate carboxylase 98.9 1.1E-08 2.4E-13 115.1 13.6 202 57-289 74-291 (472)
46 TIGR01369 CPSaseII_lrg carbamo 98.9 1.9E-08 4.2E-13 123.2 15.8 198 57-288 630-839 (1050)
47 TIGR00877 purD phosphoribosyla 98.9 1.1E-08 2.3E-13 112.6 11.6 191 72-288 79-288 (423)
48 PF14397 ATPgrasp_ST: Sugar-tr 98.9 9.3E-09 2E-13 109.3 10.7 187 86-289 16-257 (285)
49 PRK06111 acetyl-CoA carboxylas 98.9 1.2E-08 2.6E-13 112.9 11.9 188 74-289 92-292 (450)
50 PRK08591 acetyl-CoA carboxylas 98.8 6.4E-09 1.4E-13 115.4 8.8 203 57-288 75-291 (451)
51 PRK06395 phosphoribosylamine-- 98.8 2.6E-08 5.7E-13 111.5 11.8 204 57-287 66-290 (435)
52 PLN02948 phosphoribosylaminoim 98.8 6.7E-08 1.5E-12 111.9 15.6 199 57-290 84-290 (577)
53 PRK14573 bifunctional D-alanyl 98.7 1.8E-07 3.9E-12 111.8 16.9 193 72-289 543-755 (809)
54 PF07478 Dala_Dala_lig_C: D-al 98.7 3E-08 6.5E-13 100.6 8.9 159 103-290 1-175 (203)
55 TIGR00514 accC acetyl-CoA carb 98.7 6.2E-08 1.3E-12 108.0 12.1 201 56-288 74-291 (449)
56 TIGR01235 pyruv_carbox pyruvat 98.7 2.5E-08 5.4E-13 122.8 9.3 197 57-288 75-291 (1143)
57 PLN02257 phosphoribosylamine-- 98.7 1.3E-07 2.9E-12 105.9 13.9 185 72-287 77-287 (434)
58 PRK12815 carB carbamoyl phosph 98.7 1.7E-07 3.6E-12 115.4 15.9 195 57-288 631-837 (1068)
59 PF15632 ATPgrasp_Ter: ATP-gra 98.7 2E-07 4.4E-12 101.4 13.3 196 57-287 67-278 (329)
60 PRK12833 acetyl-CoA carboxylas 98.6 2.8E-07 6.1E-12 103.8 13.2 204 57-289 78-295 (467)
61 PRK06524 biotin carboxylase-li 98.6 2E-07 4.3E-12 106.0 11.7 184 73-287 118-320 (493)
62 COG1821 Predicted ATP-utilizin 98.6 2E-07 4.4E-12 97.9 10.4 151 72-288 94-254 (307)
63 PF02750 Synapsin_C: Synapsin, 98.6 2.1E-07 4.5E-12 94.6 10.1 168 86-291 1-179 (203)
64 PRK12999 pyruvate carboxylase; 98.6 1.3E-07 2.8E-12 116.8 10.4 198 57-288 79-295 (1146)
65 COG1181 DdlA D-alanine-D-alani 98.6 3.4E-07 7.4E-12 99.2 11.7 191 72-290 78-286 (317)
66 PRK05294 carB carbamoyl phosph 98.5 2.8E-07 6.1E-12 113.3 11.4 194 57-287 83-301 (1066)
67 PLN02735 carbamoyl-phosphate s 98.5 1.4E-06 3.1E-11 107.6 16.8 197 56-287 98-318 (1102)
68 cd07061 HP_HAP_like Histidine 98.5 1.2E-07 2.6E-12 96.6 6.3 50 494-547 27-78 (242)
69 PLN02735 carbamoyl-phosphate s 98.5 6.9E-07 1.5E-11 110.3 13.8 171 82-289 688-875 (1102)
70 PRK13789 phosphoribosylamine-- 98.5 1.7E-06 3.7E-11 96.8 15.7 189 75-289 86-294 (426)
71 TIGR01369 CPSaseII_lrg carbamo 98.4 1.5E-06 3.3E-11 106.9 11.6 196 56-288 81-300 (1050)
72 TIGR02712 urea_carbox urea car 98.3 4.4E-06 9.5E-11 104.1 14.2 189 73-289 90-291 (1201)
73 PF14398 ATPgrasp_YheCD: YheC/ 98.3 3.4E-06 7.5E-11 88.8 10.3 192 79-293 6-236 (262)
74 PRK12815 carB carbamoyl phosph 98.2 1.7E-05 3.6E-10 98.1 16.0 204 56-298 82-309 (1068)
75 PRK05784 phosphoribosylamine-- 98.2 1.3E-05 2.7E-10 91.6 12.3 200 57-287 70-307 (486)
76 PRK13278 purP 5-formaminoimida 97.8 0.00056 1.2E-08 75.7 16.7 175 84-290 111-312 (358)
77 COG2232 Predicted ATP-dependen 97.5 0.00034 7.5E-09 76.4 9.6 147 86-288 110-272 (389)
78 PRK13277 5-formaminoimidazole- 97.5 0.00048 1E-08 76.4 10.2 153 95-287 125-316 (366)
79 COG0439 AccC Biotin carboxylas 97.5 0.00019 4.2E-09 81.4 6.7 196 57-287 75-290 (449)
80 PF02786 CPSase_L_D2: Carbamoy 97.4 4.4E-05 9.6E-10 78.4 1.2 165 96-289 1-179 (211)
81 COG0027 PurT Formate-dependent 97.3 0.00064 1.4E-08 74.0 7.7 221 11-287 38-282 (394)
82 PF02222 ATP-grasp: ATP-grasp 96.8 0.0042 9.1E-08 62.4 8.2 151 104-287 1-158 (172)
83 KOG3895 Synaptic vesicle prote 96.5 0.0033 7.2E-08 69.2 5.3 198 78-318 182-394 (488)
84 COG0458 CarB Carbamoylphosphat 96.5 0.013 2.9E-07 65.8 9.9 193 57-292 71-293 (400)
85 COG0026 PurK Phosphoribosylami 96.0 0.093 2E-06 58.7 13.1 204 61-304 66-279 (375)
86 PF14305 ATPgrasp_TupA: TupA-l 95.8 0.39 8.3E-06 50.7 16.5 178 91-287 15-215 (239)
87 PF01071 GARS_A: Phosphoribosy 95.6 0.08 1.7E-06 54.5 9.9 164 96-287 2-186 (194)
88 COG3919 Predicted ATP-grasp en 93.7 0.16 3.5E-06 55.6 7.0 159 93-287 111-285 (415)
89 KOG3672 Histidine acid phospha 92.3 0.086 1.9E-06 59.2 2.6 62 496-564 179-244 (487)
90 COG0151 PurD Phosphoribosylami 91.0 0.48 1E-05 54.0 6.8 211 25-287 53-286 (428)
91 COG1038 PycA Pyruvate carboxyl 89.3 0.59 1.3E-05 56.8 5.9 181 83-292 108-301 (1149)
92 cd07040 HP Histidine phosphata 89.3 0.4 8.7E-06 44.6 3.7 38 494-543 34-71 (153)
93 KOG1057 Arp2/3 complex-interac 89.1 0.16 3.4E-06 61.1 1.0 43 727-769 797-840 (1018)
94 KOG3720 Lysosomal & prostatic 88.1 0.5 1.1E-05 53.6 4.1 55 491-548 73-133 (411)
95 PF14243 DUF4343: Domain of un 85.8 6.8 0.00015 37.9 9.9 82 192-290 32-117 (130)
96 KOG0238 3-Methylcrotonyl-CoA c 82.4 2.3 5E-05 49.7 5.8 187 74-292 88-291 (670)
97 PF03133 TTL: Tubulin-tyrosine 79.5 1.1 2.5E-05 47.5 2.2 55 146-218 67-127 (292)
98 PRK10172 phosphoanhydride phos 78.4 1.6 3.5E-05 50.1 3.1 52 494-547 81-135 (436)
99 PRK10172 phosphoanhydride phos 77.3 1.8 4E-05 49.7 3.1 49 494-547 119-175 (436)
100 TIGR03162 ribazole_cobC alpha- 77.2 2.3 5E-05 41.4 3.4 38 491-542 26-66 (177)
101 PF13549 ATP-grasp_5: ATP-gras 74.5 1.1 2.3E-05 47.1 0.2 47 96-155 11-57 (222)
102 KOG0369 Pyruvate carboxylase [ 74.1 5.6 0.00012 48.0 5.9 178 87-292 138-327 (1176)
103 COG4770 Acetyl/propionyl-CoA c 71.6 6.3 0.00014 46.8 5.5 181 83-292 102-295 (645)
104 KOG3720 Lysosomal & prostatic 70.9 2.7 5.9E-05 47.8 2.4 17 354-370 32-48 (411)
105 cd07067 HP_PGM_like Histidine 68.7 5.2 0.00011 37.7 3.4 37 494-542 34-70 (153)
106 TIGR01016 sucCoAbeta succinyl- 64.4 3.7 7.9E-05 45.9 1.7 42 98-152 6-48 (386)
107 TIGR03848 MSMEG_4193 probable 64.1 6.9 0.00015 39.4 3.5 35 494-542 35-69 (204)
108 PRK13463 phosphatase PhoE; Pro 64.1 7.2 0.00016 39.5 3.7 33 494-540 37-69 (203)
109 PRK03482 phosphoglycerate muta 61.9 8.6 0.00019 39.1 3.7 34 494-541 36-69 (215)
110 PHA02117 glutathionylspermidin 61.1 26 0.00056 40.2 7.6 65 146-228 309-379 (397)
111 PTZ00123 phosphoglycerate muta 59.9 9 0.0002 40.0 3.6 37 494-542 23-59 (236)
112 PRK15004 alpha-ribazole phosph 59.3 9.2 0.0002 38.4 3.4 34 494-541 35-68 (199)
113 PTZ00122 phosphoglycerate muta 56.0 12 0.00026 40.9 3.8 43 494-543 134-177 (299)
114 PF14403 CP_ATPgrasp_2: Circul 54.8 15 0.00032 42.7 4.4 193 6-235 185-429 (445)
115 PF00300 His_Phos_1: Histidine 54.3 9.6 0.00021 35.5 2.4 37 494-542 34-70 (158)
116 PRK14115 gpmA phosphoglyceromu 53.9 14 0.00029 39.2 3.7 37 494-542 35-71 (247)
117 PRK00696 sucC succinyl-CoA syn 53.6 7 0.00015 43.7 1.6 43 97-152 5-48 (388)
118 PRK01112 phosphoglyceromutase; 51.0 16 0.00034 38.2 3.6 35 494-542 36-70 (228)
119 PRK15416 lipopolysaccharide co 50.9 16 0.00035 38.2 3.6 34 494-540 88-121 (201)
120 PRK10173 glucose-1-phosphatase 49.3 14 0.0003 42.3 3.1 52 495-547 80-133 (413)
121 PRK10507 bifunctional glutathi 48.8 48 0.001 40.2 7.5 66 146-228 529-600 (619)
122 PRK13462 acid phosphatase; Pro 48.5 15 0.00033 37.5 3.0 33 494-538 40-72 (203)
123 cd02639 R3H_RRM R3H domain of 45.3 25 0.00053 30.3 3.3 34 235-268 11-44 (60)
124 PRK01295 phosphoglyceromutase; 45.2 23 0.00049 36.3 3.7 37 494-542 37-73 (206)
125 PRK14118 gpmA phosphoglyceromu 42.6 24 0.00052 36.6 3.4 37 494-542 35-71 (227)
126 PF08442 ATP-grasp_2: ATP-gras 42.3 10 0.00022 39.4 0.6 42 99-153 6-48 (202)
127 PTZ00322 6-phosphofructo-2-kin 40.8 23 0.00051 42.7 3.4 36 494-541 452-488 (664)
128 PRK07238 bifunctional RNase H/ 38.7 29 0.00062 38.5 3.5 36 494-542 206-241 (372)
129 PRK10848 phosphohistidine phos 37.3 36 0.00079 33.6 3.6 37 494-542 31-67 (159)
130 PRK10173 glucose-1-phosphatase 36.7 27 0.00059 40.0 2.9 58 352-418 27-90 (413)
131 PRK14046 malate--CoA ligase su 36.5 19 0.00041 40.9 1.6 21 99-119 7-27 (392)
132 COG0406 phoE Broad specificity 36.2 23 0.00051 35.5 2.1 39 494-544 37-75 (208)
133 smart00855 PGAM Phosphoglycera 35.7 25 0.00054 33.5 2.1 38 494-542 34-71 (155)
134 PLN00124 succinyl-CoA ligase [ 33.3 20 0.00044 41.3 1.2 23 97-119 32-54 (422)
135 TIGR00249 sixA phosphohistidin 32.5 31 0.00068 33.7 2.2 37 494-542 31-67 (152)
136 COG1181 DdlA D-alanine-D-alani 31.6 15 0.00033 40.6 -0.1 83 132-227 75-159 (317)
137 COG2062 SixA Phosphohistidine 29.1 67 0.0014 32.7 3.9 38 494-543 34-71 (163)
138 PF03133 TTL: Tubulin-tyrosine 27.2 69 0.0015 34.1 3.9 31 268-298 237-268 (292)
139 KOG2156 Tubulin-tyrosine ligas 26.1 16 0.00035 43.2 -1.1 72 111-216 283-360 (662)
140 PRK14116 gpmA phosphoglyceromu 24.5 48 0.001 34.5 2.1 36 494-541 36-71 (228)
141 KOG1382 Multiple inositol poly 23.7 69 0.0015 37.6 3.3 50 494-551 141-191 (467)
142 PRK14119 gpmA phosphoglyceromu 23.7 53 0.0011 34.1 2.2 36 494-541 36-71 (228)
143 COG1759 5-formaminoimidazole-4 20.9 92 0.002 35.3 3.4 38 96-155 124-161 (361)
No 1
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=100.00 E-value=1.4e-257 Score=2117.03 Aligned_cols=720 Identities=57% Similarity=0.899 Sum_probs=675.1
Q ss_pred CCeeEEEEeecCCccCChhHHHHHHHHhhcCCeEEEEeCccccccCCCCCCCccceeeccccCCCChHHHHHHHHhcCCc
Q 004147 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPF 83 (771)
Q Consensus 4 ~~~~~iGvCam~~Ka~SkPm~~IL~rl~~~~~f~~iiF~d~~IL~~~ve~WP~cd~lIsf~s~GfpL~kai~y~~lr~p~ 83 (771)
.++|+||||||++|++||||++||+||..+++|++|||+|+|||+|||||||.|||||||||+||||+||++|++||+||
T Consensus 38 ~r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnPF 117 (1018)
T KOG1057|consen 38 ERQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNPF 117 (1018)
T ss_pred ccceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcCCe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 004147 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (771)
Q Consensus 84 ~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 163 (771)
+||||.||+++||||.||+||++.|||+|++.+++|++|++..++++|++|+|+|||++|.||||||||+||||||||||
T Consensus 118 viNdL~mQyll~DRR~Vy~iLe~~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~EDHNIYIYY 197 (1018)
T KOG1057|consen 118 VINDLDMQYLLQDRREVYSILEAEGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNIYIYY 197 (1018)
T ss_pred eeccccHHHHHHHHHHHHHHHHHcCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCcccccEEEEe
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCc
Q 004147 164 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKE 243 (771)
Q Consensus 164 p~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke 243 (771)
|+|+|||++|||||||||||+|+|++ .+|+.|||||||||+|+|||||||||||+|+|||+||||||||+|+||+||||
T Consensus 198 PsSaGGGsqrLFRKIgnRSS~y~P~~-~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSPvvDGkV~Rns~GKE 276 (1018)
T KOG1057|consen 198 PSSAGGGSQRLFRKIGNRSSEYHPDS-SVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPVVDGKVERNSDGKE 276 (1018)
T ss_pred cCCCCccHHHHHHHhcccccccCCcc-ccccccceehhhhcCCCCccceEEeeCcchhhhhhccCccccceeeecCCCce
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEecCCccccccccccHHHHHHHHHHHHHHhhCCCCCCCCC
Q 004147 244 VRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSSAIP 323 (771)
Q Consensus 244 ~r~pv~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syVcDVNGwSFVK~n~kYYddca~iL~~~~l~~~~~~~~~~~~ 323 (771)
+||||.||++||.||+|||.||+|+||||||||++|+|||||||||||||||+|||||||+||++|++.+.+++..+.+|
T Consensus 277 vRYpv~Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~G~SYVcDVNGfSFVKns~kYYDd~AkIL~~~~~~ak~~~~~~~iP 356 (1018)
T KOG1057|consen 277 VRYPVILNSSEKQIARKVCIAFKQTVCGFDLLRANGKSYVCDVNGFSFVKNSNKYYDDCAKILGKMNLSARALAPASQIP 356 (1018)
T ss_pred eeceeecChhhHHHHhHHHhhccccccchHHhhcCCceEEEeccceeeeecchhhhHHHHHHHhhhhhhhhccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888878888
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCCCccceEEEEEEEEcCCCCcCceeeEEechHHHHHHHHhhcCCCCccceeecc
Q 004147 324 PILPWKVNEPVQPTEGLTRQGSGLGTFGQSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKS 403 (771)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eLr~vv~ViRHgDRTPKQK~K~~~~~~~f~~l~~~~~~~~~~~e~klk~ 403 (771)
+++||..+++. ++..+ +++++++|||||||||||||||||||||++|++++|++||++|+|++ ++|+|||+
T Consensus 357 ~~~p~~~~~~~---~~~v~-----~~~g~~~elrcviaViRHgDRTPKQK~K~~vt~~~f~~L~ek~~G~~-~~e~klk~ 427 (1018)
T KOG1057|consen 357 WSLPGIRNEKV---EPWVP-----TSSGGMMELRCVIAVIRHGDRTPKQKMKLSVTSPKFLGLFEKYDGYK-KEETKLKS 427 (1018)
T ss_pred CCCcccccCCC---CCcee-----cCCCccceeeeeEEEEecCCCCccceeeEEeccHHHHHHHHhhCCcc-ccceeeCC
Confidence 88888766542 22332 45678999999999999999999999999999999999999999866 78999999
Q ss_pred HHhHHHHHHHHHhhccccCCCCCCCCccchhhhhhhhHHHHHHHhcCCCCCCcce-eecchhhhhhhcccccccCCCcce
Q 004147 404 AVQLQDLLDATRILVPRSRPGRESDSEAEDFEHSKKRIICVAILHLGGQFEKFFN-VQDVLLSIQCHLLLANLVSGQFID 482 (771)
Q Consensus 404 ~~~L~~~ld~~~~~l~~~~~~~~~~~~~~~~e~~~kl~ql~~vLe~~~~f~G~nr-vQlKp~~~~~~~~~~~~~~~~~~~ 482 (771)
|.|||+|||++|.++++.+ +..+++.|+..||+||++||||||||||||| |||||+.| ...++++++..+...
T Consensus 428 ~~QLq~vLd~ar~ll~e~~-----~~~~~die~~~KleQlk~vLE~~ghFsGinrKVQlk~l~~-~~~k~se~e~~r~~~ 501 (1018)
T KOG1057|consen 428 ANQLQEVLDAARLLLEEKE-----DKDAEDIEEAKKLEQLKNVLEMYGHFSGINRKVQLKPLKW-VYVKKSEGELEREPQ 501 (1018)
T ss_pred HHHHHHHHHHHHhhhcccc-----cCcccchhhHHHHHHHHHHHHhhCCCCCccceeeeeeccc-cCCCCCccccccCcc
Confidence 9999999999999998754 2233445667899999999999999999999 99999999 545555666666678
Q ss_pred eEEEEecc----cch---HHHHHHHhc---CCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhhhcccCCCCcc
Q 004147 483 FLIEQFYQ----DNG---VNEIAYWWG---SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPI 552 (771)
Q Consensus 483 ~~lI~KWG----~~g---Ae~LG~~fR---yp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~legeltPI 552 (771)
++||+||| ||| ||||||+|| |+|+|+|||||||||||||||||||||||||||||||||||+|||+||||
T Consensus 502 llliLKwGGelT~agr~QAeeLGr~FR~~~~gg~g~gllrLhst~rhDlKIYaSdEgRVqmtAaaFAkgLL~lEgelTpi 581 (1018)
T KOG1057|consen 502 LLLILKWGGELTHAGRYQAEELGRQFRCDYPGGQGLGLLRLHSTYRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPI 581 (1018)
T ss_pred eeEEeeeCCEecchhHhhHHHHHHHHHhcCCCCCCcceeeehhhhhccceeEecCcchHHHHHHHHHHHHHhhccCCcHH
Confidence 99999999 999 999999999 45789999999999999999999999999999999999999999999999
Q ss_pred eeeeEecCCcccCCCccchHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 004147 553 LVSLVSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQVR 632 (771)
Q Consensus 553 lv~~V~kd~~lLD~~~~a~~~m~~vK~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~l~~~~~~~~~ 632 (771)
|||||+||+.|||++++|++.|++||++||++|+.|.++ .++|+||..+ |+|+.++.+++++|+.++..++
T Consensus 582 LvqmVkkdn~LLD~~~~as~~m~~vK~~L~~ilq~~~~~-----~~e~~~~~~~----P~~~~~l~~~ve~vk~~~k~~~ 652 (1018)
T KOG1057|consen 582 LVQMVKKDNTLLDDDNAASSYMDKVKARLHEILQAGREF-----TPEFDWPELM----PNPSEVLTQVVELVKNPVKVCD 652 (1018)
T ss_pred HHHHHHhcchhhcCcchhHHHHHHHHHHHHHHHhcCCcC-----CCccchhhcC----CcHhHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999976 4778999763 7999999999999999999888
Q ss_pred HHhhhhhhhcccCCCCCCCCChhhhhhcCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHhccccCccccCCCCcch
Q 004147 633 QLAKDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDVY 712 (771)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~c~gE~~~L~~eRW~KL~~dF~~~k~~~fD~SKIpdiY 712 (771)
+++.... ++ ..++++.+|.+|+||+|+|+||++||+|||+|||+. +++||||||||||
T Consensus 653 e~~~~~~-------------~~--------~~i~v~~~~~r~~~~sE~~~Lm~~RW~Kl~rdf~~k-~~r~DiSKIpdiY 710 (1018)
T KOG1057|consen 653 ENFALIE-------------PL--------DHIDVERIQPRWPCHSETPDLMRERWEKLERDFYNK-RERFDISKIPDIY 710 (1018)
T ss_pred Hhhhccc-------------cc--------cceeeecccCCCCcCCCCHHHHHHHHHHHHHHHhhh-ccccCccccchHH
Confidence 7554311 12 137888889999999999999999999999999974 5999999999999
Q ss_pred hhhhhhhhcccccccccHHHHHHHHHHhcccccccccCCCchhhhhHHHHHhh-hccCC
Q 004147 713 DSCKYDLLHNAHLNLEGLDELFKVAQLLADGVIPNEYGINPKQKLKIGSKNSS-LNGKG 770 (771)
Q Consensus 713 D~iKYD~lHN~~l~l~~l~eLY~~ak~Lad~V~PqEYGI~~~eKl~IG~~i~~-LL~K~ 770 (771)
||||||+|||++|.++.+.|||.+||.|||+|+||||||+++||++||+.+|. ||+|-
T Consensus 711 D~~KYD~~HN~~l~~~~~~ely~~ak~lad~vip~eYgi~~~~kl~I~~~~~~~ll~Ki 769 (1018)
T KOG1057|consen 711 DTIKYDLLHNRQLLLNGFDELYKYAKLLADIVIPQEYGINPQEKLKIGQGICTPLLGKI 769 (1018)
T ss_pred hhhhHHhhcchhhhhccccHHHHHHHhhcccccccccCCCHHHhhhhhhhhcchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999 99983
No 2
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.8e-29 Score=266.54 Aligned_cols=255 Identities=22% Similarity=0.268 Sum_probs=193.7
Q ss_pred eecCCccCChhHHHHHHHHhhcCCeEEEEeCccccccCCCCCCCccceeeccccCCCCh-HHHHHHHHhcCCcccCCchh
Q 004147 12 CVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLVNELEP 90 (771)
Q Consensus 12 Cam~~Ka~SkPm~~IL~rl~~~~~f~~iiF~d~~IL~~~ve~WP~cd~lIsf~s~GfpL-~kai~y~~lr~p~~iNdl~~ 90 (771)
+.+..--++-++..+..+.....-.+++-+..+.+...+...=.-.|+++..-...+-. -.+++.++..|.++||+..+
T Consensus 34 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~viN~p~~ 113 (318)
T COG0189 34 AILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFATRFLRLAERKGVPVINDPQS 113 (318)
T ss_pred EEEcccccccccchhHHHHHhhhhhhccccccccccccccchhccCCEEEEecCCchhhHHHHHHHHHHcCCeEECCHHH
Confidence 33333444555555555544444455666777777666555555568888776655544 45677899999999999999
Q ss_pred hhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCCh
Q 004147 91 QHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGG 170 (771)
Q Consensus 91 q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG 170 (771)
...++||..+++.|+++|||+|.|+++.+. ++....-.+.++.|+|+||++|+ .|-|
T Consensus 114 i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~------------~~~~~~~~~~~g~pvVlKp~~Gs-----------~G~g 170 (318)
T COG0189 114 IRRCRNKLYTTQLLAKAGIPVPPTLITRDP------------DEAAEFVAEHLGFPVVLKPLDGS-----------GGRG 170 (318)
T ss_pred HHhhhhHHHHHHHHHhcCCCCCCEEEEcCH------------HHHHHHHHHhcCCCEEEeeCCCC-----------Cccc
Confidence 999999999999999999999999999752 12333334456689999999999 5555
Q ss_pred HHHHhhhcCCCcccccccccccccC--cceEEeeccCC-CCceeEEEEECCceeE--EEeeeCCCCCCeeeecCCCCcee
Q 004147 171 MKELFRKVGNRSSEFHPDVRRVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAH--AEARKSPVVDGVVMRNPDGKEVR 245 (771)
Q Consensus 171 ~~rLfrkign~sS~~~~~~~~~r~~--gsyIyEEFi~t-~G~DIKVytVG~~~vh--Ae~RKSP~~DG~vrrN~~gke~r 245 (771)
+ |+ +.|....+..-+..+... ..+|.||||++ .+.|+||+++|+.+++ |++|.++ .|+||+|.|+|+..
T Consensus 171 V---~~-v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~--~~~~R~N~a~Gg~~ 244 (318)
T COG0189 171 V---FL-VEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPA--SGDFRSNLARGGRA 244 (318)
T ss_pred e---EE-ecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEeeeccccC--CCCceeeccccccc
Confidence 4 33 444441111111123333 46999999999 6678888888888888 8899887 89999999999999
Q ss_pred eeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEecCCccccccc
Q 004147 246 YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNS 295 (771)
Q Consensus 246 ~pv~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syVcDVNGwSFVK~n 295 (771)
.+++||++++++|.|||.++|..++||||+++++|.||||||.-+-.++.
T Consensus 245 e~~~l~~e~~elA~kaa~~lGl~~~GVDiie~~~g~~V~EVN~sP~~~~~ 294 (318)
T COG0189 245 EPCELTEEEEELAVKAAPALGLGLVGVDIIEDKDGLYVTEVNVSPTGKGE 294 (318)
T ss_pred cccCCCHHHHHHHHHHHHHhCCeEEEEEEEecCCCcEEEEEeCCCccccc
Confidence 99999999999999999999999999999999999999999986656664
No 3
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.95 E-value=1.9e-28 Score=242.04 Aligned_cols=171 Identities=30% Similarity=0.438 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHH
Q 004147 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 174 (771)
Q Consensus 95 ~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rL 174 (771)
.||..++++|+++|||+|+|.+++.. . +...+++-.+ ++|+|+||+.|. .|-|+. +
T Consensus 2 ~dK~~~~~~l~~~gipvP~t~~~~~~--~-------~~~~~~~~~~---~~p~ViKp~~g~-----------~G~gV~-~ 57 (190)
T PF08443_consen 2 EDKLLTLQLLAKAGIPVPETRVTNSP--E-------EAKEFIEELG---GFPVVIKPLRGS-----------SGRGVF-L 57 (190)
T ss_dssp HBHHHHHHHHHHTT-----EEEESSH--H-------HHHHHHHHH-----SSEEEE-SB------------------E-E
T ss_pred CCHHHHHHHHHHCCcCCCCEEEECCH--H-------HHHHHHHHhc---CCCEEEeeCCCC-----------CCCEEE-E
Confidence 58999999999999999999999752 1 2233443221 589999999997 555553 3
Q ss_pred hhhcCCCccccccccccc-ccCcceEEeeccCC-CCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH
Q 004147 175 FRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP 252 (771)
Q Consensus 175 frkign~sS~~~~~~~~~-r~~gsyIyEEFi~t-~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~ 252 (771)
++......+..+ .+ ..+..+++||||+. .|.|+|||+||+++++|+.|.++ +|+||+|.+.|+...++.|++
T Consensus 58 i~~~~~~~~~l~----~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~--~~d~r~n~~~g~~~~~~~l~~ 131 (190)
T PF08443_consen 58 INSPDELESLLD----AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSP--EGDFRTNLSRGGKVEPYDLPE 131 (190)
T ss_dssp EESHCHHHHHHH---------TTT-EEEE----SS---EEEEEETTEEEEEEE--------------------EE----H
T ss_pred ecCHHHHHHHHH----HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecC--cccchhhhccCceEEEecCCH
Confidence 332221111111 22 25677899999999 56999999999999999999998 899999999888899999999
Q ss_pred HHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEecCCccccccc
Q 004147 253 NEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNS 295 (771)
Q Consensus 253 eEk~iA~ka~~afgq~VcGfDLLRs~g~syVcDVNGwSFVK~n 295 (771)
+++++|.++++++|+++|||||+++++++||||||.++-++..
T Consensus 132 e~~~~a~~~~~~lgl~~~giDi~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 132 EIKELALKAARALGLDFAGIDILDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEETT---TTH
T ss_pred HHHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEecCCchHhHH
Confidence 9999999999999999999999999999999999999877654
No 4
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.92 E-value=1.6e-24 Score=232.67 Aligned_cols=266 Identities=20% Similarity=0.222 Sum_probs=189.3
Q ss_pred CCeeEEEEeecCCccCChhHHHHHHHHhhcCCeEEEEeCccccccCCCCCCCccceeeccccCCCChHHHHHHHH-hcCC
Q 004147 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYAT-LRKP 82 (771)
Q Consensus 4 ~~~~~iGvCam~~Ka~SkPm~~IL~rl~~~~~f~~iiF~d~~IL~~~ve~WP~cd~lIsf~s~GfpL~kai~y~~-lr~p 82 (771)
.+..+||-|--.||.+|==-..|+....+.| ++++.-..+.=|+ +..| .|+.|-....-.=-....+|.. -.+.
T Consensus 19 ~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~G-i~~v~Id~~~pl~---~qgp-fDvilhK~~~~~~~~~~~~~~~e~pgv 93 (328)
T PLN02941 19 QKRFVVGYALTPKKVKSFLQPSLEALARSKG-IDLVAIDPSRPLS---EQGP-FDVILHKLYGKEWRQQLEEYREKHPDV 93 (328)
T ss_pred CCceEEEEEECHHHHHHHhhHHHHHHHHHCC-CeEEEecCCCCcc---ccCC-cCEEEEecCCHHHHHHHHHHHHHCCCc
Confidence 3578999888888888766666777776665 6666555443222 1223 3777755422110223344443 4557
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCC-------CCCCCEEEEeccCCCcccccccccccee--eecCeeccCcEEEeecc
Q 004147 83 FLVNELEPQHLLHDRRKVYEQLEKYG-------IPVPRYALVNREVPYQELDYFIEEEDFV--EVHGNRFWKPFVEKPVH 153 (771)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~~qiL~~~g-------IP~P~t~~~~r~~p~~~~~~~~e~~d~i--~v~g~~~~kPfVeKpv~ 153 (771)
.+||.+.++..+.||..++++|++.| ||+|+++++.... ..+ ...-..++.|+|.||+.
T Consensus 94 ~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~------------~al~~~~~~~~l~~P~V~KPl~ 161 (328)
T PLN02941 94 TVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDE------------SSIPDAVALAGLKFPLVAKPLV 161 (328)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHH------------HHHHHHHHHhcCCCCEEEeecc
Confidence 99999999999999999999999999 9999999997631 111 01123478999999999
Q ss_pred ccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCC
Q 004147 154 GDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG 233 (771)
Q Consensus 154 GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG 233 (771)
|.. ++.| +....|.+..+.-. .+..|+.||||+-+|.|+||||||++ ++|+.|+| .+
T Consensus 162 g~G--------ss~g----h~m~lv~~~~~L~~-------l~~p~~lQEfVnh~g~d~RVfVvGd~-v~~~~R~S---~~ 218 (328)
T PLN02941 162 ADG--------SAKS----HKMSLAYDQEGLSK-------LEPPLVLQEFVNHGGVLFKVYVVGDY-VKCVRRFS---LP 218 (328)
T ss_pred cCC--------Cccc----cceEEecCHHHHHh-------cCCcEEEEEecCCCCEEEEEEEECCE-EEEEEecC---Cc
Confidence 930 1133 23333433322111 33469999999999999999999999 59999998 55
Q ss_pred eee---ecCCCC----------------ce-------eeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeC---CCcEEE
Q 004147 234 VVM---RNPDGK----------------EV-------RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE---GRSYVC 284 (771)
Q Consensus 234 ~vr---rN~~gk----------------e~-------r~pv~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~---g~syVc 284 (771)
.|+ .|++.| +. ..+...+++-+++|.++++++|+.++||||++.. ++.||+
T Consensus 219 n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~Vi 298 (328)
T PLN02941 219 DVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVI 298 (328)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEE
Confidence 676 888866 32 4455667789999999999999999999999995 356799
Q ss_pred ecCCccccccccccHHHHHHHHHHH
Q 004147 285 DVNGWSFVKNSYKYYDDAACVLRKM 309 (771)
Q Consensus 285 DVNGwSFVK~n~kYYddca~iL~~~ 309 (771)
|||+++-+|+-..|+..-.+.|.++
T Consensus 299 dVN~fP~~k~~p~~~~~l~~~~~~~ 323 (328)
T PLN02941 299 DINYFPGYAKMPGYETVLTDFLLSL 323 (328)
T ss_pred EecCCCccccCCchHHHHHHHHHHH
Confidence 9999999999999995544444333
No 5
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=228.41 Aligned_cols=249 Identities=20% Similarity=0.261 Sum_probs=179.2
Q ss_pred EEEEeecCCccCChhHHHHHHHHhhcCCeEEEEeCcccc---ccCC-------CCCCCccceeeccccC--CCChHHHHH
Q 004147 8 TIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVI---LEDP-------IEKWPICDCLIAFYSS--GYPLEKAES 75 (771)
Q Consensus 8 ~iGvCam~~Ka~SkPm~~IL~rl~~~~~f~~iiF~d~~I---L~~~-------ve~WP~cd~lIsf~s~--GfpL~kai~ 75 (771)
++||-+.+....| -+.+++-+.+.| ++++++.-+.+ ++.. ......+|+.+..... ++.-....+
T Consensus 2 ~~~i~~~~~s~~s--~~~~~~a~~~~g-~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~ 78 (300)
T PRK10446 2 KIAILSRDGTLYS--CKRLREAAIQRG-HLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALR 78 (300)
T ss_pred eEEEEecCCcchh--HHHHHHHHHHcC-CeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHH
Confidence 4666666655444 345555555555 66666654321 1111 0123457888874322 132234466
Q ss_pred HHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEeeccc
Q 004147 76 YATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHG 154 (771)
Q Consensus 76 y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~G 154 (771)
.++..+|+++|+..+..+++||..++++|+++|||+|+|.++... . +..+.++ .+ +.|+|+||.+|
T Consensus 79 ~le~~g~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~~~~~~--~-------~~~~~~~~~~----~~P~VvKP~~g 145 (300)
T PRK10446 79 QFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSP--D-------DTSDLIDMVG----GAPLVVKLVEG 145 (300)
T ss_pred HHHHCCCceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEEEeCCH--H-------HHHHHHHHhC----CCCEEEEECCC
Confidence 788999999999999999999999999999999999999988531 1 1112221 11 47999999999
Q ss_pred cCcceeEEeccCCCChHHHHhhhcCCCccccccccccc-ccCcceEEeeccCC-CCceeEEEEECCceeEEEeeeCCCCC
Q 004147 155 DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVD 232 (771)
Q Consensus 155 edHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~-r~~gsyIyEEFi~t-~G~DIKVytVG~~~vhAe~RKSP~~D 232 (771)
. .|.|+. +++...+....++ .+ ..+..+|+||||+. .|.|+||+++|+++++|+.|.++ .
T Consensus 146 ~-----------~g~GV~-~v~~~~~~~~~~~----~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~--~ 207 (300)
T PRK10446 146 T-----------QGIGVV-LAETRQAAESVID----AFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAK--E 207 (300)
T ss_pred C-----------CcccEE-EEcCHHHHHHHHH----HHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecC--C
Confidence 7 555553 2221111011111 11 23457999999987 79999999999999999999886 6
Q ss_pred CeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEecCCcc
Q 004147 233 GVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWS 290 (771)
Q Consensus 233 G~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syVcDVNGwS 290 (771)
|+|+.|.+.|+..++..|+++++++|.++++++|..++|||++.+.+++||+|||..+
T Consensus 208 ~~~~~n~~~g~~~~~~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~~g~~vlEvN~~p 265 (300)
T PRK10446 208 GDFRSNLHRGGAASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASP 265 (300)
T ss_pred CchhheeccCCeeccCCCCHHHHHHHHHHHHHhCCCEEEEEEEEcCCCcEEEEEECCC
Confidence 7899999988888999999999999999999999999999999997779999999654
No 6
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.90 E-value=3.4e-23 Score=210.59 Aligned_cols=246 Identities=20% Similarity=0.234 Sum_probs=176.0
Q ss_pred EEEeecCCccCChhHHHHHHHHhhcCCeEEEEeCcc---ccccCCCCCCCccceeeccccCCCChHHHHHHHHhcCCccc
Q 004147 9 IGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDK---VILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLV 85 (771)
Q Consensus 9 iGvCam~~Ka~SkPm~~IL~rl~~~~~f~~iiF~d~---~IL~~~ve~WP~cd~lIsf~s~GfpL~kai~y~~lr~p~~i 85 (771)
|||++=.... =++.+.+.+.+.| +++.+|.-. +-++..-..||.+|+.+.....+.+-..+.+.++..+.+++
T Consensus 2 ~~~~~~~~~~---~~~~l~~a~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~ 77 (277)
T TIGR00768 2 LAILYDRIRL---DEKMLKEAAEELG-IDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESLGVPVI 77 (277)
T ss_pred EEEEEcCCCH---HHHHHHHHHHHcC-CceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHCCCeee
Confidence 6777654333 4455555555555 566666532 22222223488999988765333333356677778888899
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEecc
Q 004147 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (771)
Q Consensus 86 Ndl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~ 165 (771)
|+..+..+++||..+++.|+++|||+|+|..+... . +...++. .++.|+|+||..|.
T Consensus 78 ~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~~~~~~--~-------~~~~~~~----~~~~p~vvKP~~g~---------- 134 (277)
T TIGR00768 78 NSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSP--E-------EALKLIE----EIGFPVVLKPVFGS---------- 134 (277)
T ss_pred CCHHHHHHHhhHHHHHHHHHHCCCCCCCEEEeCCH--H-------HHHHHHH----hcCCCEEEEECcCC----------
Confidence 99999999999999999999999999999988542 1 1112221 24579999999986
Q ss_pred CCCChHHHHhhhcCCCcccccccccccc----cCcceEEeeccCC-CCceeEEEEECCceeEEEeeeCCCCCCeeeecCC
Q 004147 166 SAGGGMKELFRKVGNRSSEFHPDVRRVR----REGSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPD 240 (771)
Q Consensus 166 ~~GgG~~rLfrkign~sS~~~~~~~~~r----~~gsyIyEEFi~t-~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~ 240 (771)
.|.|+. + +.+...... -...++ ..+.||+||||+. .|.|+||+++|+++++++.|. + .+.|+.|.+
T Consensus 135 -~g~gv~-~---i~~~~~l~~-~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~-~--~~~~~~n~~ 205 (277)
T TIGR00768 135 -WGRLVS-L---ARDKQAAET-LLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRI-T--SGHWRTNLA 205 (277)
T ss_pred -CCCceE-E---EcCHHHHHH-HHHHHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEc-C--CCchhhhhh
Confidence 333332 1 111111100 000111 2257999999997 469999999999999999887 3 677999999
Q ss_pred CCceeeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeC-CCcEEEecCCcc
Q 004147 241 GKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCE-GRSYVCDVNGWS 290 (771)
Q Consensus 241 gke~r~pv~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~-g~syVcDVNGwS 290 (771)
.++...++.|+++.+++|.++++++|..+||||++.+. |++||+|||..+
T Consensus 206 ~g~~~~~~~l~~~~~~~a~~~~~~l~~~~~~vD~~~~~~g~~~viEiN~~p 256 (277)
T TIGR00768 206 RGGKAEPCPLTEEIEELAIKAAKALGLDVVGIDLLESEDRGLLVNEVNPNP 256 (277)
T ss_pred cCCeeeecCCCHHHHHHHHHHHHHhCCCeEEEEEEEcCCCCeEEEEEcCCc
Confidence 88888899999999999999999999999999999985 489999999764
No 7
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.89 E-value=8.5e-23 Score=209.87 Aligned_cols=235 Identities=19% Similarity=0.204 Sum_probs=169.7
Q ss_pred hHHHHHHHHhhcCCeEEE-EeCcc--ccccCCCCCCCccceeeccc-cCCCChHHHHHHHHhcCCcccCCchhhhHhhhH
Q 004147 22 PMGQILDRLQAFGEFEVI-HFGDK--VILEDPIEKWPICDCLIAFY-SSGYPLEKAESYATLRKPFLVNELEPQHLLHDR 97 (771)
Q Consensus 22 Pm~~IL~rl~~~~~f~~i-iF~d~--~IL~~~ve~WP~cd~lIsf~-s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR 97 (771)
.++.+..-|.+.| +++. +.-++ +-++++...|..+|+.|-.. +.+.++ .....++..+..++|+..+...++||
T Consensus 11 ~~~~l~~al~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~-~~~~~le~~g~~~~n~~~~~~~~~dK 88 (280)
T TIGR02144 11 DEKMLIEELEKLG-LPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRAL-YSARLLEALGVPVINSSHVIEACGDK 88 (280)
T ss_pred HHHHHHHHHHHcC-CceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHH-HHHHHHHHCCCcEECcHHHHHHHhhH
Confidence 3566666666655 3333 33333 23455667999999988653 223222 33455678888899999999999999
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhh
Q 004147 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRK 177 (771)
Q Consensus 98 ~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrk 177 (771)
..++++|+++|||+|+|.++... . +..+.. ..+++|+|+||..|. .|-|+. +
T Consensus 89 ~~~~~~l~~~gip~P~t~~~~~~--~-------~~~~~~----~~~~~P~vvKP~~g~-----------~g~gv~-~--- 140 (280)
T TIGR02144 89 IFTYLKLAKAGVPTPRTYLAFDR--E-------AALKLA----EALGYPVVLKPVIGS-----------WGRLVA-L--- 140 (280)
T ss_pred HHHHHHHHHCCcCCCCeEeeCCH--H-------HHHHHH----HHcCCCEEEEECcCC-----------CcCCEE-E---
Confidence 99999999999999999988532 1 011111 234689999999986 333432 1
Q ss_pred cCCCcccccc--ccccc--ccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHH
Q 004147 178 VGNRSSEFHP--DVRRV--RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN 253 (771)
Q Consensus 178 ign~sS~~~~--~~~~~--r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~e 253 (771)
+.+....... ....+ ..+..+|+||||+..|.|++|+++|+.++|++.|.+ +.|+.|.+.|+...++.++++
T Consensus 141 v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~----~~~~~~~~~g~~~~~~~~~~~ 216 (280)
T TIGR02144 141 IRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS----NHWRTNTARGGKAEPCPLDEE 216 (280)
T ss_pred ECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC----CchhhhhhcCCceeccCCCHH
Confidence 2211111000 00011 134569999999987999999999999999999976 569999987788889999999
Q ss_pred HHHHHHHHHHHhcCceeeEeEEee-CCCcEEEecCCcc
Q 004147 254 EKQMAREVCIAFRQAVCGFDLLRC-EGRSYVCDVNGWS 290 (771)
Q Consensus 254 Ek~iA~ka~~afgq~VcGfDLLRs-~g~syVcDVNGwS 290 (771)
.+++|.++++++|..++|||++.+ +|++||+|||.++
T Consensus 217 ~~~~a~~~~~~lg~~~~~vD~~~~~~g~~~v~EvN~~p 254 (280)
T TIGR02144 217 VEELAVKAAEAVGGGVVAIDIFESKERGLLVNEVNHVP 254 (280)
T ss_pred HHHHHHHHHHHhCCCeEEEEEEEcCCCCEEEEEEeCCc
Confidence 999999999999999999999998 4579999999864
No 8
>PRK05246 glutathione synthetase; Provisional
Probab=99.88 E-value=2.1e-22 Score=213.81 Aligned_cols=198 Identities=15% Similarity=0.178 Sum_probs=149.0
Q ss_pred CCCccceeeccccCCCCh-----HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccc
Q 004147 53 KWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELD 127 (771)
Q Consensus 53 ~WP~cd~lIsf~s~GfpL-----~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~ 127 (771)
.||..|+.+.....-|.. ...+++++.++..++|+......+.||+.+++++. ++|+|.++... .
T Consensus 76 ~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~N~p~~l~~~~dK~~~~~l~~----~vP~T~~~~~~--~---- 145 (316)
T PRK05246 76 PLADFDVILMRKDPPFDMEYIYATYLLERAERPGTLVVNKPQSLRDANEKLFTLWFPE----LMPPTLVTRDK--A---- 145 (316)
T ss_pred ccccCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEECCHHHHHhCccHHHHHhhhc----cCCCEEEeCCH--H----
Confidence 467788888553333331 24677888889999999999999999999999866 89999987542 1
Q ss_pred ccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc--cCcceEEeeccC
Q 004147 128 YFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFMP 205 (771)
Q Consensus 128 ~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r--~~gsyIyEEFi~ 205 (771)
+..++++-. .|+|+||+.|+ .|.|+-++ ++ ....+..-...+. ....||+|+||+
T Consensus 146 ---~~~~~~~~~-----~~vVlKP~~G~-----------~G~gV~~i-~~---~~~~~~~~~~~l~~~~~~~~lvQ~~I~ 202 (316)
T PRK05246 146 ---EIRAFRAEH-----GDIILKPLDGM-----------GGAGIFRV-KA---DDPNLGSILETLTEHGREPVMAQRYLP 202 (316)
T ss_pred ---HHHHHHHHC-----CCEEEEECCCC-----------CccceEEE-eC---CCccHHHHHHHHHHccCCeEEEEeccc
Confidence 112333322 38999999998 55554322 11 1111110000122 245899999999
Q ss_pred C-CCceeEEEEECCceeE-EEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHH---HHhcCceeeEeEEeeCCC
Q 004147 206 T-GGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCEGR 280 (771)
Q Consensus 206 t-~G~DIKVytVG~~~vh-Ae~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~---~afgq~VcGfDLLRs~g~ 280 (771)
. .+.|+||+++|++++| |+.|.++ .|+||+|.|.|+...++.||++++++|.+++ ++.|+.+||||++ +
T Consensus 203 ~~~~~D~Rv~vv~g~vv~~a~~R~~~--~~~~rtN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli----~ 276 (316)
T PRK05246 203 EIKEGDKRILLVDGEPVGYALARIPA--GGETRGNLAAGGRGEATPLTERDREICAAIGPELKERGLIFVGIDVI----G 276 (316)
T ss_pred cCCCCCEEEEEECCEEhhheeEecCC--CCCcccCccCCceEeccCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe----C
Confidence 8 5789999999999999 9999987 7899999999999999999999999999999 5779999999999 3
Q ss_pred cEEEecCCc
Q 004147 281 SYVCDVNGW 289 (771)
Q Consensus 281 syVcDVNGw 289 (771)
.||+|||..
T Consensus 277 ~~l~EvN~~ 285 (316)
T PRK05246 277 DYLTEINVT 285 (316)
T ss_pred CEEEEEeCC
Confidence 589999944
No 9
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.87 E-value=4.5e-22 Score=211.48 Aligned_cols=199 Identities=15% Similarity=0.188 Sum_probs=149.2
Q ss_pred CCCCccceeeccccCCCCh-----HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccc
Q 004147 52 EKWPICDCLIAFYSSGYPL-----EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQEL 126 (771)
Q Consensus 52 e~WP~cd~lIsf~s~GfpL-----~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~ 126 (771)
-.|+..|+++-.-...|.. ...+++++..+..++|+........||..+++++. |+|+|++.+.. .
T Consensus 74 ~~l~~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~viN~p~~i~~~~dK~~~~~~~~----~vP~T~v~~~~--~--- 144 (312)
T TIGR01380 74 LSLGELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVINSPQGLRDANEKLFTLQFPK----VIPPTLVTRDK--A--- 144 (312)
T ss_pred cccccCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEEeCHHHHHhhhhHHHHhhCcC----CCCCEEEeCCH--H---
Confidence 4577788888664333321 34688888889999999999999999999988863 89999987532 1
Q ss_pred cccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc--cCcceEEeecc
Q 004147 127 DYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFM 204 (771)
Q Consensus 127 ~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r--~~gsyIyEEFi 204 (771)
+..++++-. .|+|+||+.|+ .|.|+-+ +......+..-+.... ....|++||||
T Consensus 145 ----~~~~~~~~~-----g~vVvKPl~G~-----------~G~gv~~----v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI 200 (312)
T TIGR01380 145 ----EIRAFLAEH-----GDIVLKPLDGM-----------GGEGIFR----LDPGDPNFNSILETMTQRGREPVMAQRYL 200 (312)
T ss_pred ----HHHHHHHHc-----CCEEEEECCCC-----------CCceEEE----EcCCCccHHHHHHHHHhccCCcEEEEecc
Confidence 112333212 28999999998 5555532 2211111110000111 24579999999
Q ss_pred CC-CCceeEEEEECCcee-EEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHH---HHhcCceeeEeEEeeCC
Q 004147 205 PT-GGTDVKVYTVGPEYA-HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVC---IAFRQAVCGFDLLRCEG 279 (771)
Q Consensus 205 ~t-~G~DIKVytVG~~~v-hAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~---~afgq~VcGfDLLRs~g 279 (771)
++ .+.|+||++||++++ ||+.|.++ +|+||.|.+.|+...+++||++++++|.+++ +++|+.+||||++
T Consensus 201 ~~~~~~D~Rv~vv~g~vv~~ai~R~~~--~gd~r~N~~~Gg~~~~~~l~~e~~~ia~~~~~~~~~~gl~~agVDii---- 274 (312)
T TIGR01380 201 PEIKEGDKRILLIDGEPIGAAVARIPA--GGEFRGNLAVGGRGEATELSERDREICADVAPELKRRGLLFVGIDVI---- 274 (312)
T ss_pred ccccCCCEEEEEECCeEEEEEEEecCC--CCCccccccCCceeeccCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe----
Confidence 98 779999999999975 69999886 8899999999999999999999999999998 7789999999999
Q ss_pred CcEEEecCCc
Q 004147 280 RSYVCDVNGW 289 (771)
Q Consensus 280 ~syVcDVNGw 289 (771)
++||+|||..
T Consensus 275 g~~v~EvN~~ 284 (312)
T TIGR01380 275 GGYLTEVNVT 284 (312)
T ss_pred CCEEEEEecC
Confidence 4799999964
No 10
>PRK12458 glutathione synthetase; Provisional
Probab=99.84 E-value=7.5e-21 Score=204.72 Aligned_cols=174 Identities=19% Similarity=0.227 Sum_probs=132.9
Q ss_pred HHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccC
Q 004147 77 ATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (771)
Q Consensus 77 ~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ged 156 (771)
++..+.+++|+......+.||...+++++ +++|+|++.+.. . +..++++-.| +.|+|+||++|+
T Consensus 110 ~e~~g~~viN~p~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~--~-------~~~~~~~~~~---~~pvVvKPl~G~- 173 (338)
T PRK12458 110 AARDGVLVVNDPDGLRIANNKLYFQSFPE---EVRPTTHISRNK--E-------YIREFLEESP---GDKMILKPLQGS- 173 (338)
T ss_pred HHhCCCeEecCHHHHHhccCHHHHHhhcc---CCCCCEEEeCCH--H-------HHHHHHHHcC---CCeEEEEECCCC-
Confidence 35678999999999999999999876544 799999988531 1 1123332111 136999999997
Q ss_pred cceeEEeccCCCChHHHHhhhcC--CCcccccccccccccCcceEEeeccCC-CCceeEEEEECCcee------EEEeee
Q 004147 157 HSIMIYYPSSAGGGMKELFRKVG--NRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYTVGPEYA------HAEARK 227 (771)
Q Consensus 157 Hni~IYyp~~~GgG~~rLfrkig--n~sS~~~~~~~~~r~~gsyIyEEFi~t-~G~DIKVytVG~~~v------hAe~RK 227 (771)
.|.|+.+ +..-. |..+.++ .+...+.+|+||||++ .+.|+||++||++++ ||+.|.
T Consensus 174 ----------gG~gV~~-v~~~~~~~~~~ile----~~~~~~~~ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a~~R~ 238 (338)
T PRK12458 174 ----------GGQGVFL-IEKSAQSNLNQILE----FYSGDGYVIAQEYLPGAEEGDVRILLLNGEPLERDGHYAAMRRV 238 (338)
T ss_pred ----------CccCeEE-EecCChhhHHHHHH----HHhhCCCEEEEEcccCCCCCCEEEEEECCEEEeeccceeEEEEe
Confidence 4445432 11100 0111111 2223568999999998 678999999999999 999998
Q ss_pred CCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh---cCceeeEeEEeeCCCcEEEecC
Q 004147 228 SPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF---RQAVCGFDLLRCEGRSYVCDVN 287 (771)
Q Consensus 228 SP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~af---gq~VcGfDLLRs~g~syVcDVN 287 (771)
+. .|+||+|.+-|+...++.||++++++|.+++.++ |+.+||||++ +++|+|||
T Consensus 239 ~~--~~d~RsN~~~Gg~~~~~~l~~~~~~ia~~~~~~l~~~GL~~~gVDli----~~~l~EIN 295 (338)
T PRK12458 239 PA--GGDVRSNVHAGGSVVKHTLTKEELELCEAIRPKLVRDGLFFVGLDIV----GDKLVEVN 295 (338)
T ss_pred cC--CCCeeecccCCCcccCcCCCHHHHHHHHHHHHHHhhcCCeEEeEEEE----CCEEEEEe
Confidence 76 7999999998888899999999999999999988 9999999999 46899999
No 11
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.75 E-value=5.4e-18 Score=181.86 Aligned_cols=185 Identities=17% Similarity=0.148 Sum_probs=132.8
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEeeccccCcceeEE
Q 004147 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVHGDDHSIMIY 162 (771)
Q Consensus 84 ~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~GedHni~IY 162 (771)
-.||=+-..++.||..+.++|+++|||+|+|.++....- ..++..+ +.+ ..|+|+||++|+
T Consensus 25 ~~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~--------~~~~l~~~~~~---~~~VVVKPl~Gs------- 86 (317)
T TIGR02291 25 RYNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQA--------EVKTIHNIVKD---HPDFVIKPAQGS------- 86 (317)
T ss_pred hcCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchh--------hHHHHHHHHcc---CCCEEEEECCCC-------
Confidence 457778888999999999999999999999998865310 1122222 222 237999999999
Q ss_pred eccCCCChHHHHhhhcCCCc------cccccc-c--------ccc-ccC--cceEEeeccCC-----------CCceeEE
Q 004147 163 YPSSAGGGMKELFRKVGNRS------SEFHPD-V--------RRV-RRE--GSYIYEEFMPT-----------GGTDVKV 213 (771)
Q Consensus 163 yp~~~GgG~~rLfrkign~s------S~~~~~-~--------~~~-r~~--gsyIyEEFi~t-----------~G~DIKV 213 (771)
+|-|.. +.....+.. ..+.++ + ..+ ... ..+.|+||+-. .+.||||
T Consensus 87 ----~GrGI~-~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV 161 (317)
T TIGR02291 87 ----GGKGIL-VITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRI 161 (317)
T ss_pred ----CccCeE-EEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEE
Confidence 887874 333211100 000000 0 001 112 22445566533 2389999
Q ss_pred EEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCC--------------------------------HHHHHHHHHH
Q 004147 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT--------------------------------PNEKQMAREV 261 (771)
Q Consensus 214 ytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt--------------------------------~eEk~iA~ka 261 (771)
+|||++.++||.|.+. -.|.|+.|.|.|++..++.|. ++-.++|.+|
T Consensus 162 ~vv~~~~vaa~~R~~~-~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A 240 (317)
T TIGR02291 162 IVFKGYPVMAMMRLPT-RASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASC 240 (317)
T ss_pred EEECCEEEEEEEEccC-ccCCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHH
Confidence 9999999999999762 257899999999999999886 6888999999
Q ss_pred HHHhcCceeeEeEEee-CCCcEEEecCCcccc
Q 004147 262 CIAFRQAVCGFDLLRC-EGRSYVCDVNGWSFV 292 (771)
Q Consensus 262 ~~afgq~VcGfDLLRs-~g~syVcDVNGwSFV 292 (771)
++++|..++|+|++.+ +++++|+|||+-+-+
T Consensus 241 ~~~~g~~~~GvDii~~~~~g~~VlEVN~~Pg~ 272 (317)
T TIGR02291 241 WELTGLGYMGVDMVLDKEEGPLVLELNARPGL 272 (317)
T ss_pred HHhcCCCeEEEEEEEeCCCCEEEEEeCCCCCC
Confidence 9999999999999986 789999999976544
No 12
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.74 E-value=3.6e-18 Score=194.59 Aligned_cols=178 Identities=22% Similarity=0.322 Sum_probs=133.5
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 004147 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (771)
Q Consensus 84 ~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 163 (771)
.+|+..+..++.||..+.++|+++|||+|++.++... . +..++++ .++ |+|+||++|+
T Consensus 285 ~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~~~~~--~-------~~~~~~~----~~G-~vVVKP~~G~-------- 342 (547)
T TIGR03103 285 ELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNG--E-------AVEAFLA----EHG-AVVVKPVRGE-------- 342 (547)
T ss_pred CCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCH--H-------HHHHHHH----HhC-CEEEEECCCC--------
Confidence 6788899999999999999999999999999998642 1 1112222 233 7999999997
Q ss_pred ccCCCChHHHHhhhcCCCcccccccccc-cccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCC--CCe------
Q 004147 164 PSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 234 (771)
Q Consensus 164 p~~~GgG~~rLfrkign~sS~~~~~~~~-~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~--DG~------ 234 (771)
+|.|+. + .+.+.... ..-+.. .+....+|.|||++ |.|+||+|||+++++|+.|..|-| ||.
T Consensus 343 ---~G~Gv~-v--~v~~~~eL-~~a~~~a~~~~~~vlvEe~i~--G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~L 413 (547)
T TIGR03103 343 ---QGKGIS-V--DVRTPDDL-EAAIAKARQFCDRVLLERYVP--GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDL 413 (547)
T ss_pred ---CCcCeE-E--ecCCHHHH-HHHHHHHHhcCCcEEEEEecc--CCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHH
Confidence 566653 2 12222111 100001 12445799999994 999999999999999999999854 442
Q ss_pred ------------------------------------------------eeecCCCCceeeee--eCCHHHHHHHHHHHHH
Q 004147 235 ------------------------------------------------VMRNPDGKEVRYPV--LLTPNEKQMAREVCIA 264 (771)
Q Consensus 235 ------------------------------------------------vrrN~~gke~r~pv--~Lt~eEk~iA~ka~~a 264 (771)
.++|+|-|+....| .+.++.+++|.++|++
T Consensus 414 ie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~ 493 (547)
T TIGR03103 414 IEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARA 493 (547)
T ss_pred HHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHH
Confidence 25788877777777 7999999999999999
Q ss_pred hcCceeeEeEEeeC-CCc--EEEecCCcccc
Q 004147 265 FRQAVCGFDLLRCE-GRS--YVCDVNGWSFV 292 (771)
Q Consensus 265 fgq~VcGfDLLRs~-g~s--yVcDVNGwSFV 292 (771)
+|+.||||||+... .+| +|||||--+-.
T Consensus 494 ~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl 524 (547)
T TIGR03103 494 LDIPVVGIDFLVPDVTGPDYVIIEANERPGL 524 (547)
T ss_pred hCCCeEEEEEEeccCCCCCeEEEEecCCccc
Confidence 99999999999873 455 79999966544
No 13
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.71 E-value=8.4e-16 Score=160.54 Aligned_cols=247 Identities=17% Similarity=0.191 Sum_probs=163.9
Q ss_pred eeEEEEee------cCCccCChhHHHHHHHHhhcCCeEEEEeC-ccccccCCCCCCCccceeeccccCCCChH-HHHHHH
Q 004147 6 KITIGVCV------MEKKVFSAPMGQILDRLQAFGEFEVIHFG-DKVILEDPIEKWPICDCLIAFYSSGYPLE-KAESYA 77 (771)
Q Consensus 6 ~~~iGvCa------m~~Ka~SkPm~~IL~rl~~~~~f~~iiF~-d~~IL~~~ve~WP~cd~lIsf~s~GfpL~-kai~y~ 77 (771)
+++|+||+ -+....|. +.|.+=|.+.| +++++.. ++.+++. -.|..+|+.+..+...+..+ .+-..+
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~--~~i~~al~~~g-~~v~~i~~~~~~~~~--~~~~~~D~v~~~~~g~~~~~~~~~~~l 78 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSG--AAVLAALREAG-YDAHPIDPGEDIAAQ--LKELGFDRVFNALHGRGGEDGTIQGLL 78 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhH--HHHHHHHHHCC-CEEEEEecCcchHHH--hccCCCCEEEEecCCCCCCccHHHHHH
Confidence 45788888 44433442 66777776644 6665553 3333221 22456898887653222221 233455
Q ss_pred HhcCCcccC-CchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccC
Q 004147 78 TLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (771)
Q Consensus 78 ~lr~p~~iN-dl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ged 156 (771)
+..+...+| +..+..++.||..+.++|+++|||+|++..+... ++.... -..++.|+|+||..|.
T Consensus 79 e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~------------~~~~~~-~~~~~~P~ivKP~~g~- 144 (304)
T PRK01372 79 ELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWIVLTRE------------EDLLAA-IDKLGLPLVVKPAREG- 144 (304)
T ss_pred HHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCc------------chHHHH-HhhcCCCEEEeeCCCC-
Confidence 667766664 5789999999999999999999999999998752 111111 1235689999999985
Q ss_pred cceeEEeccCCCChHHHHhhhcCCCcccccccccc-cccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCC--
Q 004147 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG-- 233 (771)
Q Consensus 157 Hni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~-~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG-- 233 (771)
.|.|+. ++.|.....+ -... ......+|+||||+ |+++.|.++|+.+.++..+..+ .|
T Consensus 145 ----------~s~Gv~----~v~~~~el~~-~~~~~~~~~~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~--~~~~ 205 (304)
T PRK01372 145 ----------SSVGVS----KVKEEDELQA-ALELAFKYDDEVLVEKYIK--GRELTVAVLGGKALPVIEIVPA--GEFY 205 (304)
T ss_pred ----------CCCCEE----EeCCHHHHHH-HHHHHHhcCCcEEEEcccC--CEEEEEEEECCCccceEEEEec--CCEE
Confidence 333432 2322221111 0000 12356799999997 8999999999999888887764 33
Q ss_pred eeeecCCCCceee--eeeCCHHH----HHHHHHHHHHhcC-ceeeEeEEeeC-CCcEEEecCCcc
Q 004147 234 VVMRNPDGKEVRY--PVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCE-GRSYVCDVNGWS 290 (771)
Q Consensus 234 ~vrrN~~gke~r~--pv~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs~-g~syVcDVNGwS 290 (771)
.++.+.+.++..+ |..+++++ +++|.++++++|. .+|+||++.++ |++||+|||..+
T Consensus 206 ~~~~~~~~g~~~~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p 270 (304)
T PRK01372 206 DYEAKYLAGGTQYICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQP 270 (304)
T ss_pred eeeccccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCC
Confidence 4677777665443 33577653 6789999999998 48999999996 679999999643
No 14
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.69 E-value=5.5e-17 Score=190.36 Aligned_cols=183 Identities=21% Similarity=0.319 Sum_probs=136.6
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 004147 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (771)
Q Consensus 84 ~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 163 (771)
.-++..+..++.||..+.++|+++|||+|++.++... ++..+. -..+++|+|+||.+|.
T Consensus 202 ~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~------------~~a~~~-a~~iG~PvVVKP~~G~-------- 260 (727)
T PRK14016 202 DQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSA------------EDAWEA-AEEIGYPVVVKPLDGN-------- 260 (727)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCH------------HHHHHH-HHHcCCCEEEEECCCC--------
Confidence 4677788899999999999999999999999988542 222221 1245689999999997
Q ss_pred ccCCCChHHHHhhhcCCCcccccccccc-cccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCC--CCe------
Q 004147 164 PSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV------ 234 (771)
Q Consensus 164 p~~~GgG~~rLfrkign~sS~~~~~~~~-~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~--DG~------ 234 (771)
+|.|+. + ++.+....-. -... .+....+|+||||+ |.|+||++||+++++|+.|.+|-+ ||.
T Consensus 261 ---~G~GV~-~--~v~~~~el~~-a~~~a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~L 331 (727)
T PRK14016 261 ---HGRGVT-V--NITTREEIEA-AYAVASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIREL 331 (727)
T ss_pred ---CCCceE-E--ecCCHHHHHH-HHHHHHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHH
Confidence 455553 2 1221111100 0001 12346799999996 999999999999999999999855 332
Q ss_pred -------------------------------------------------ee--ecCCCCceeeeee--CCHHHHHHHHHH
Q 004147 235 -------------------------------------------------VM--RNPDGKEVRYPVL--LTPNEKQMAREV 261 (771)
Q Consensus 235 -------------------------------------------------vr--rN~~gke~r~pv~--Lt~eEk~iA~ka 261 (771)
+| .|.+.|+....+. ++|+.+++|.+|
T Consensus 332 i~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~a 411 (727)
T PRK14016 332 IEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERA 411 (727)
T ss_pred HHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHH
Confidence 23 4888788888885 999999999999
Q ss_pred HHHhcCceeeEeEEeeC-------CCcEEEecCCcccccccc
Q 004147 262 CIAFRQAVCGFDLLRCE-------GRSYVCDVNGWSFVKNSY 296 (771)
Q Consensus 262 ~~afgq~VcGfDLLRs~-------g~syVcDVNGwSFVK~n~ 296 (771)
|+++|+.||||||+... .+..|||||.-+-+....
T Consensus 412 a~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~~ 453 (727)
T PRK14016 412 AKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMHL 453 (727)
T ss_pred HHhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcchhhcc
Confidence 99999999999999853 456899999887776533
No 15
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.67 E-value=1e-16 Score=191.13 Aligned_cols=175 Identities=22% Similarity=0.296 Sum_probs=129.4
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEecc
Q 004147 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (771)
Q Consensus 86 Ndl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~ 165 (771)
++..+..+++||..+.++|+++|||+|++.++... ++..+. -..+++|+|+||.+|.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~------------~ea~~~-~~~ig~PvVVKP~~g~---------- 259 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSA------------EDAWEA-AQDLGYPVVIKPYDGN---------- 259 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCH------------HHHHHH-HHHcCCCEEEEECCCC----------
Confidence 56677889999999999999999999999988542 122221 1235689999999996
Q ss_pred CCCChHHHHhhhcCCCcccccccccc-cccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCC-----------
Q 004147 166 SAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG----------- 233 (771)
Q Consensus 166 ~~GgG~~rLfrkign~sS~~~~~~~~-~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG----------- 233 (771)
+|.|+. + .+.+....-. -... ......+|+||||+ |+|+||++||+++++|+.|.+|.|-|
T Consensus 260 -~G~GV~-l--~v~s~~el~~-a~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~ 332 (864)
T TIGR02068 260 -HGRGVT-I--NILTRDEIES-AYEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIE 332 (864)
T ss_pred -CccCEE-E--EeCCHHHHHH-HHHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHH
Confidence 444442 2 1111111100 0001 12346799999995 89999999999999999999997655
Q ss_pred ------------------------------------------------eeeecCCCCceeeee--eCCHHHHHHHHHHHH
Q 004147 234 ------------------------------------------------VVMRNPDGKEVRYPV--LLTPNEKQMAREVCI 263 (771)
Q Consensus 234 ------------------------------------------------~vrrN~~gke~r~pv--~Lt~eEk~iA~ka~~ 263 (771)
..++|.+-|+...-+ .++|+.+++|.+||+
T Consensus 333 ~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~ 412 (864)
T TIGR02068 333 QINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAK 412 (864)
T ss_pred HhccCcccCccccCCccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHH
Confidence 225677778877767 999999999999999
Q ss_pred HhcCceeeEeEEee-------CCCcEEEecCCcc
Q 004147 264 AFRQAVCGFDLLRC-------EGRSYVCDVNGWS 290 (771)
Q Consensus 264 afgq~VcGfDLLRs-------~g~syVcDVNGwS 290 (771)
++|+.||||||+-. ..+..|||||+-+
T Consensus 413 ~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~~p 446 (864)
T TIGR02068 413 IIGLDIAGVDIVTEDISRPLRDTDGAIVEVNAAP 446 (864)
T ss_pred HhCCCeEEEEEEecCCCCCccccCcEEEEEcCCc
Confidence 99999999999763 1234799999664
No 16
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.64 E-value=9.6e-16 Score=180.43 Aligned_cols=184 Identities=18% Similarity=0.180 Sum_probs=127.1
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 004147 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (771)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 162 (771)
...|.+.+-.+++||..+.++|+++|||+|++.++... ++....-....++|+|+||++|.
T Consensus 475 t~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~~~~~~------------e~a~~~~~~~~g~PvVVKP~~g~------- 535 (752)
T PRK02471 475 TSKDNYISPLIMENKVVTKKILAEAGFPVPAGDEFTSL------------EEALADYSLFADKAIVVKPKSTN------- 535 (752)
T ss_pred cCCCHHHHHHHhhCHHHHHHHHHHCCcCCCCEEEEcCH------------HHHHHHHHHhcCCCEEEEECCCC-------
Confidence 45677777788899999999999999999999888531 12221111112589999999998
Q ss_pred eccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeee------
Q 004147 163 YPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM------ 236 (771)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vr------ 236 (771)
.|-|+. +++.+.+.......-....+.+..+|+||||+ |+|+||+|||+++++|+.|.+|.|.|+=+
T Consensus 536 ----~G~GV~-~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~--G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eL 608 (752)
T PRK02471 536 ----FGLGIS-IFKEPASLEDYEKALEIAFREDSSVLVEEFIV--GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVREL 608 (752)
T ss_pred ----CcCCeE-EecCcCCHHHHHHHHHHHHhcCCcEEEEeccc--CCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHH
Confidence 666664 55444333322221000123456799999995 99999999999999999999996644311
Q ss_pred ---ec--------------------------------------------------CCCCceee--eeeCCHHHHHHHHHH
Q 004147 237 ---RN--------------------------------------------------PDGKEVRY--PVLLTPNEKQMAREV 261 (771)
Q Consensus 237 ---rN--------------------------------------------------~~gke~r~--pv~Lt~eEk~iA~ka 261 (771)
.| .+-|+... -=.+.++-+++|.+|
T Consensus 609 i~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~a 688 (752)
T PRK02471 609 VAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKA 688 (752)
T ss_pred HHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHH
Confidence 11 11111111 114667779999999
Q ss_pred HHHhcCceeeEeEEeeC-------C--CcEEEecCCcccc
Q 004147 262 CIAFRQAVCGFDLLRCE-------G--RSYVCDVNGWSFV 292 (771)
Q Consensus 262 ~~afgq~VcGfDLLRs~-------g--~syVcDVNGwSFV 292 (771)
|+++|+.||||||+-.+ . +-.|||||+-+-.
T Consensus 689 a~~igl~~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l 728 (752)
T PRK02471 689 AKALGAKICGVDLIIPDLTQPASPEHPNYGIIELNFNPAM 728 (752)
T ss_pred HHhcCCCEEEEEEEeCCCcccccccCCCeEEEEecCCCch
Confidence 99999999999999653 1 4568999976543
No 17
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=99.55 E-value=2.5e-14 Score=148.27 Aligned_cols=250 Identities=23% Similarity=0.264 Sum_probs=150.1
Q ss_pred ceEEEEEEEEcCCCCcCceeeEEechHHHHHHHHhhcCCCCccceeeccHHhHHHHHHHHHhhccccCCCCCCCCccchh
Q 004147 355 ELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRPGRESDSEAEDF 434 (771)
Q Consensus 355 eLr~vv~ViRHgDRTPKQK~K~~~~~~~f~~l~~~~~~~~~~~e~klk~~~~L~~~ld~~~~~l~~~~~~~~~~~~~~~~ 434 (771)
||+.|+.|+|||||||-.+++..++.+.+..+..
T Consensus 1 ~L~~v~v~~RHG~R~P~~~~~~~~~~~~~~~~~~---------------------------------------------- 34 (347)
T PF00328_consen 1 ELEQVQVLHRHGDRTPLSSFPKDVTEWWDCELES---------------------------------------------- 34 (347)
T ss_dssp EEEEEEEEEE--SBB-SHHHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred CEEEEEEEEeCcCCcCCCCCCccccccccchhhh----------------------------------------------
Confidence 6999999999999999988776655555444442
Q ss_pred hhhhhhHHHHHHHhcCCCCCCcceeecchhhhhhhcccccccCCCcceeEEEEecc---cch---HHHHHHHhc--CCCC
Q 004147 435 EHSKKRIICVAILHLGGQFEKFFNVQDVLLSIQCHLLLANLVSGQFIDFLIEQFYQ---DNG---VNEIAYWWG--SHSE 506 (771)
Q Consensus 435 e~~~kl~ql~~vLe~~~~f~G~nrvQlKp~~~~~~~~~~~~~~~~~~~~~lI~KWG---~~g---Ae~LG~~fR--yp~~ 506 (771)
.+...+.+++|+|.+ +| . ......+|| +.| ...||+.|| |+
T Consensus 35 --------~~~~~~~~~~~~~~~-~~-----~---------------~~~~~~~~g~LT~~G~~q~~~lG~~lr~~Y~-- 83 (347)
T PF00328_consen 35 --------SAMSPETPGPFPGNY-IQ-----N---------------EFNWPCKWGQLTPRGMEQHYQLGKRLRERYP-- 83 (347)
T ss_dssp --------HHHHHTGGSGGGGTT--------T---------------CCGSSSCTTSBTHHHHHHHHHHHHHHHHHHH--
T ss_pred --------hhcccCCCCCccccc-cc-----c---------------ccccCCCCCcccchhhhHHHHHHHHHHHHHH--
Confidence 222233345566542 22 0 112234788 777 889999999 96
Q ss_pred CCchhhhhhcccccceEeecCCchhHhhHHHHHhhhhcccC-----------CCCcceeeeEecCCcccCCCccchHHHH
Q 004147 507 GTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG-----------QLTPILVSLVSKDSSMLDGLDNASIEME 575 (771)
Q Consensus 507 ~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~leg-----------eltPIlv~~V~kd~~lLD~~~~a~~~m~ 575 (771)
+|+.-+.+. .++.|+||+..||++||+||+.||....+ .-.|+-+..+.......++..
T Consensus 84 --~l~~~~~~~-~~v~vrSt~~~Rt~~Sa~af~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 153 (347)
T PF00328_consen 84 --GLFPDNYNP-EQVYVRSTNKQRTIQSAQAFLQGLYPPSGEPFPDITQPPNSWQPIPVHTIPEIKKNDDDIL------- 153 (347)
T ss_dssp --TSSTSSS-T-TTEEEEEESSHHHHHHHHHHHHHHSHTTSS-ECTTTSCTSCTCTEEEEEEECCHCGTTSSS-------
T ss_pred --Hhccccccc-cceeEEEeccchHHHHHHHHHHHHhCCCccccccccccccCCCCcceeeccccccccchhc-------
Confidence 676666666 99999999999999999999999997766 233444443332000111110
Q ss_pred HHHHHHHHHHhcCCCccCCCCCCCCCCcccCCCCCCCHHHHHHHHHH----HHHHHHHHHHHHhhhhhhhcccCCCCCCC
Q 004147 576 EAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVK----LTKKVTEQVRQLAKDEDEDLAETNPYDVI 651 (771)
Q Consensus 576 ~vK~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (771)
+ .....|....+ .-......+..........
T Consensus 154 ---------------------------~--------~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 188 (347)
T PF00328_consen 154 ---------------------------L--------PNYDNCPAYNEIDSENEKEQSEEIDKWNQDFQES---------- 188 (347)
T ss_dssp ---------------------------S--------TSHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred ---------------------------c--------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------
Confidence 0 00111221111 1111111111111110000
Q ss_pred CChhhhhhcCCCcchhhhhccCCCCCCCCHHHHHHHHHHHHHHHhccccCccccCCCCcchhhhhhhhhcccccccccHH
Q 004147 652 PPYDQAKALGKTNIDVDRIAAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLD 731 (771)
Q Consensus 652 ~~~~~~~~l~~~~~~~~~~~~~~~c~gE~~~L~~eRW~KL~~dF~~~k~~~fD~SKIpdiYD~iKYD~lHN~~l~l~~l~ 731 (771)
+. ..+.. .|+|++...+...|..++..+|.. ...+.+.+|++|+.+++|++++..+ ..+.
T Consensus 189 --~~---------~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 248 (347)
T PF00328_consen 189 --LA---------KRLQK-----VIPGEDNLTFFDVWAIFDDCLYEQ--IYNDGSPFPEWFTDMKEDALQLEYL--EDLK 248 (347)
T ss_dssp --HH---------HHHHH-----HSTTCEECTHHHHHHHHHHHHHHH--HHHTT-GGGGGSCHTSHHHHHHHHH--HHHH
T ss_pred --hh---------hhhcc-----ccCccccccchhhhhhhhhhhhhh--ccCCCCCCchhhcccchHHHHHHhh--hhHH
Confidence 00 00001 066777777889999999999864 2689999999999999999998773 3445
Q ss_pred HHHHHHHHhcccccccccCCCchhhhhHHHHHhh-hcc
Q 004147 732 ELFKVAQLLADGVIPNEYGINPKQKLKIGSKNSS-LNG 768 (771)
Q Consensus 732 eLY~~ak~Lad~V~PqEYGI~~~eKl~IG~~i~~-LL~ 768 (771)
++|.. ||.+++....+|..++. |++
T Consensus 249 ~~~~~------------~~~~~~~~~~~~~~ll~~ll~ 274 (347)
T PF00328_consen 249 EYYQY------------YGYSDEIARLQGGPLLNELLR 274 (347)
T ss_dssp HHHHH------------CSTTHHHHHHHHHHHHHHHHH
T ss_pred HHhhc------------ccCCchHHHHHHhHHHHHHHH
Confidence 55655 99999988888887776 553
No 18
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.53 E-value=2.1e-14 Score=168.27 Aligned_cols=178 Identities=23% Similarity=0.323 Sum_probs=119.3
Q ss_pred cCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeec-cCcEEEeeccccCcceeEEe
Q 004147 85 VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF-WKPFVEKPVHGDDHSIMIYY 163 (771)
Q Consensus 85 iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~-~kPfVeKpv~GedHni~IYy 163 (771)
..+..+-.++.||..+-++|+++|||+|...++.+. ++....- ..+ ++|+|+||++|.
T Consensus 464 ~tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~~~~~~------------~~a~~~~-~~~~g~PVVVKP~~g~-------- 522 (737)
T TIGR01435 464 KDNYVSPLIMENKVVTKKVLAEAGFRVPFGDEFSSQ------------ALALEAF-SLFENKAIVVKPKSTN-------- 522 (737)
T ss_pred CccHHHHHHhcCHHHHHHHHHHcCcCCCCEEEECCH------------HHHHHHH-HHhcCCCEEEeeCCCC--------
Confidence 344555688899999999999999999999888542 1111110 112 479999999997
Q ss_pred ccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCC--CCe--ee--
Q 004147 164 PSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV--DGV--VM-- 236 (771)
Q Consensus 164 p~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~--DG~--vr-- 236 (771)
+|-|+. +++...+. .++...+. .++.+..+|+||||+ |+|+||+|+|+++++|+.|.+|-| ||+ ++
T Consensus 523 ---~G~GVs-i~~~~~~~-eel~~Al~~A~~~~~~VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eL 595 (737)
T TIGR01435 523 ---YGLGIT-IFKNGFTL-EDFQEALNIAFSEDSSVIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVREL 595 (737)
T ss_pred ---CcCCeE-EecCcCCH-HHHHHHHHHHHhcCCeEEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHH
Confidence 565653 33322111 11111111 234566799999996 999999999999999999999877 543 11
Q ss_pred ---ecC---CCCcee-----------------------------------------------eee-eCCHHHHHHHHHHH
Q 004147 237 ---RNP---DGKEVR-----------------------------------------------YPV-LLTPNEKQMAREVC 262 (771)
Q Consensus 237 ---rN~---~gke~r-----------------------------------------------~pv-~Lt~eEk~iA~ka~ 262 (771)
.|. .|.+.+ -.+ .+.++-+++|.+||
T Consensus 596 I~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa 675 (737)
T TIGR01435 596 VAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIA 675 (737)
T ss_pred HHHhccCcccCCcccCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHH
Confidence 121 122211 122 44567799999999
Q ss_pred HHhcCceeeEeEEeeC-CC--------cEEEecCCcc
Q 004147 263 IAFRQAVCGFDLLRCE-GR--------SYVCDVNGWS 290 (771)
Q Consensus 263 ~afgq~VcGfDLLRs~-g~--------syVcDVNGwS 290 (771)
+|+|+.||||||+-.. .. --|||||--+
T Consensus 676 ~algl~i~GVDii~~di~~p~~~~~~~~~iiEvN~~P 712 (737)
T TIGR01435 676 TAVGAAICGVDLIIPDETIPDTDKHAIWGVIEANFNP 712 (737)
T ss_pred HhcCCCEEEEEEEecCCCCCccccccceEEEEEcCCc
Confidence 9999999999999541 11 2389999543
No 19
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.52 E-value=4.7e-13 Score=140.66 Aligned_cols=243 Identities=16% Similarity=0.201 Sum_probs=152.8
Q ss_pred cCChhHHHHHHHHhhcCCeEEEEeCcc-ccccCCCCCCCccceeeccccCCCCh-HHHHHHHHhcCCccc-CCchhhhHh
Q 004147 18 VFSAPMGQILDRLQAFGEFEVIHFGDK-VILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLL 94 (771)
Q Consensus 18 a~SkPm~~IL~rl~~~~~f~~iiF~d~-~IL~~~ve~WP~cd~lIsf~s~GfpL-~kai~y~~lr~p~~i-Ndl~~q~~l 94 (771)
+.-+--++|++-|.+.| ++++.+... ..+.. ...=+.+|+.+....-.+-. ..+-++++..+.+.+ ++..+..++
T Consensus 16 ~sl~s~~~i~~al~~~g-~~~~~i~~~~~~~~~-~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~ 93 (299)
T PRK14571 16 ISLRSGERVKKALEKLG-YEVTVFDVDEDFLKK-VDQLKSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMIC 93 (299)
T ss_pred chHHHHHHHHHHHHHcC-CeEEEEccCchHHHH-hhhccCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHH
Confidence 33345567777777754 566555432 11111 11112457666553211111 245667778886555 569999999
Q ss_pred hhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHH
Q 004147 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 174 (771)
Q Consensus 95 ~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rL 174 (771)
+||..+.++|+ +|||+|++..+... . ....+++|+|+||.+|. .|-|+.
T Consensus 94 ~DK~~~k~~l~-~~ip~p~~~~~~~~-------------~----~~~~l~~P~vvKP~~g~-----------~s~Gv~-- 142 (299)
T PRK14571 94 FDKLLTYRFLK-GTVEIPDFVEIKEF-------------M----KTSPLGYPCVVKPRREG-----------SSIGVF-- 142 (299)
T ss_pred cCHHHHHHHHh-cCCCCCCEEEEech-------------h----hhhhcCCCEEEecCCCC-----------CcCCEE--
Confidence 99999999998 58999999888431 0 11235689999999985 233432
Q ss_pred hhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCc---eeEEEeeeCCCCCC--eeeecCCCCcee--e
Q 004147 175 FRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVVDG--VVMRNPDGKEVR--Y 246 (771)
Q Consensus 175 frkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~---~vhAe~RKSP~~DG--~vrrN~~gke~r--~ 246 (771)
++.|...... .+. .++....+|+||||+ |+++.|-++|.. .+.+....-|. ++ .+..+.++++.. .
T Consensus 143 --~v~~~~el~~-~~~~~~~~~~~vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~~~-~~~~~~~~k~~~g~~~~~~ 216 (299)
T PRK14571 143 --ICESDEEFQH-ALKEDLPRYGSVIVQEYIP--GREMTVSILETEKGFEVLPILELRPK-RRFYDYVAKYTKGETEFIL 216 (299)
T ss_pred --EECCHHHHHH-HHHHHHhhCCcEEEEcccc--ceEEEEEEEcCCCCeeeeceEEEecC-CCccccccccCCCCeeEEe
Confidence 1222221111 000 122345799999996 899999999853 35555443331 22 134444445444 3
Q ss_pred eeeCCHHH----HHHHHHHHHHhcC-ceeeEeEEeeCCCcEEEecCCccccccccccH
Q 004147 247 PVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYY 299 (771)
Q Consensus 247 pv~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs~g~syVcDVNGwSFVK~n~kYY 299 (771)
|..|+++. +++|.++++++|. .+|+||++..+|++||+|||.-+-......+.
T Consensus 217 p~~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~~~~~viEiN~~Pg~~~~s~~~ 274 (299)
T PRK14571 217 PAPLNPEEERLVKETALKAFVEAGCRGFGRVDGIFSDGRFYFLEINTVPGLTELSDLP 274 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEECCcEEEEEeeCCCCCCccCHHH
Confidence 56688764 5689999999995 79999999888899999999887666544444
No 20
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.52 E-value=2.9e-13 Score=141.95 Aligned_cols=208 Identities=15% Similarity=0.183 Sum_probs=130.6
Q ss_pred ccceeeccccCCCC-hHHHHHHHHhcCCcccC-CchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 004147 56 ICDCLIAFYSSGYP-LEKAESYATLRKPFLVN-ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (771)
Q Consensus 56 ~cd~lIsf~s~Gfp-L~kai~y~~lr~p~~iN-dl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (771)
.+|+.+......+. ...+-+.++..+.+.+| +..+..+++||..+.++|+++|||+|++.++.++ +. +..
T Consensus 63 ~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~-~~-------~~~ 134 (315)
T TIGR01205 63 GIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQN-RA-------SAD 134 (315)
T ss_pred CCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEecc-cc-------cch
Confidence 36777764321111 12556677888866666 5899999999999999999999999999998732 11 000
Q ss_pred ce-eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 004147 134 DF-VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 211 (771)
Q Consensus 134 d~-i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DI 211 (771)
+. +.-....++.|+|+||..|. .|.|+. ++.|...... -+. ....+..+|+||||+ |+++
T Consensus 135 ~~~~~~~~~~~~~P~vvKP~~~~-----------~s~Gv~----~v~~~~el~~-~~~~~~~~~~~~lvEe~i~--G~e~ 196 (315)
T TIGR01205 135 ELECEQVAEPLGFPVIVKPAREG-----------SSVGVS----KVKSEEELQA-ALDEAFEYDEEVLVEQFIK--GREL 196 (315)
T ss_pred hhhHHHHHHhcCCCEEEEeCCCC-----------CccCEE----EECCHHHHHH-HHHHHHhcCCcEEEEcCCC--CEEE
Confidence 00 00001235689999999975 222321 1222211111 000 112456799999995 9999
Q ss_pred EEEEEC-CceeEEEeeeCCCCC-CeeeecCCCCcee--eeeeCCHHH----HHHHHHHHHHhcC-ceeeEeEEeeC-CCc
Q 004147 212 KVYTVG-PEYAHAEARKSPVVD-GVVMRNPDGKEVR--YPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCE-GRS 281 (771)
Q Consensus 212 KVytVG-~~~vhAe~RKSP~~D-G~vrrN~~gke~r--~pv~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs~-g~s 281 (771)
.|.++| +.....+.+-..... -.+..+.+.++.. .|..+++++ +++|.++++++|. .+++||++.+. |++
T Consensus 197 ~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~ 276 (315)
T TIGR01205 197 EVSILGNEEALPIIEIVPEIEGFYDYEAKYLDGSTEYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEI 276 (315)
T ss_pred EEEEECCCCccceEEecCCCCCeeCcccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCE
Confidence 999999 543344443221100 0133343433333 344677754 7899999999998 69999999985 579
Q ss_pred EEEecCCc
Q 004147 282 YVCDVNGW 289 (771)
Q Consensus 282 yVcDVNGw 289 (771)
||+|||.-
T Consensus 277 ~viEvN~~ 284 (315)
T TIGR01205 277 YLNEINTI 284 (315)
T ss_pred EEEEeeCC
Confidence 99999954
No 21
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.48 E-value=7e-13 Score=140.01 Aligned_cols=246 Identities=16% Similarity=0.179 Sum_probs=152.8
Q ss_pred eeEEEEeec----CCccCChhHHHHHHHHhhcCCeEEEEeCc--cccccCCCCCCCccc-eeeccccCCCChHHHHHHHH
Q 004147 6 KITIGVCVM----EKKVFSAPMGQILDRLQAFGEFEVIHFGD--KVILEDPIEKWPICD-CLIAFYSSGYPLEKAESYAT 78 (771)
Q Consensus 6 ~~~iGvCam----~~Ka~SkPm~~IL~rl~~~~~f~~iiF~d--~~IL~~~ve~WP~cd-~lIsf~s~GfpL~kai~y~~ 78 (771)
+++|+|-+= ++-..-+-.++|++-|.+- .++++.+.- ..++..-.+.. +| +++++|+..--...+-+.++
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~-g~~~~~~~~~~~~~~~~l~~~~--~d~vf~~lhG~~ge~~~i~~~le 79 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQ-GYDAVGVDASGKELVAKLLELK--PDKCFVALHGEDGENGRVSALLE 79 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHc-CCEEEEEcCCchhHHHHhhccC--CCEEEEeCCCCCCCChHHHHHHH
Confidence 456666542 2333335677888888774 477776642 22222211222 44 34455543222335666777
Q ss_pred hcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCc
Q 004147 79 LRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 157 (771)
Q Consensus 79 lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedH 157 (771)
..+ ||+-++..+..+++||..+.++|+++|||||++.++... ... -..+++|+|+||.+|.
T Consensus 80 ~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~~~~~~------------~~~----~~~~~~P~vVKP~~gg-- 141 (296)
T PRK14569 80 MLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAKFLTDK------------LVA----EDEISFPVAVKPSSGG-- 141 (296)
T ss_pred HcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeEEEchh------------hhh----HhhcCCCEEEEeCCCC--
Confidence 888 667788999999999999999999999999999887531 001 1346789999999974
Q ss_pred ceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeee
Q 004147 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMR 237 (771)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrr 237 (771)
.|-|+. ++.|...... -+........+|+||||+ |+++.|.++|+....+....++ +..+..
T Consensus 142 ---------ss~Gv~----~v~~~~eL~~-a~~~~~~~~~~lvEefI~--G~E~tv~vl~~~~~~~~~i~~~--~~~~~~ 203 (296)
T PRK14569 142 ---------SSIATF----KVKSIQELKH-AYEEASKYGEVMIEQWVT--GKEITVAIVNDEVYSSVWIEPQ--NEFYDY 203 (296)
T ss_pred ---------CCcCeE----EcCCHHHHHH-HHHHHHhcCCEEEEcccc--cEEEEEEEECCcCcceEEEecC--CCcCCh
Confidence 222321 2222211111 000111234689999995 8999999999876555544332 222211
Q ss_pred -cCCCCceee--eeeCC----HHHHHHHHHHHHHhcC-ceeeEeEEee-CCCcEEEecCCcc
Q 004147 238 -NPDGKEVRY--PVLLT----PNEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVNGWS 290 (771)
Q Consensus 238 -N~~gke~r~--pv~Lt----~eEk~iA~ka~~afgq-~VcGfDLLRs-~g~syVcDVNGwS 290 (771)
+.+.+...+ |..++ .+-+++|.++++++|. .+|+||++-+ +|.+||+|||.-+
T Consensus 204 ~~k~~~~~~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~P 265 (296)
T PRK14569 204 ESKYSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSP 265 (296)
T ss_pred hhccCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCC
Confidence 122233333 44454 3567889999999995 6999999887 5679999999443
No 22
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.47 E-value=4.7e-14 Score=140.19 Aligned_cols=145 Identities=22% Similarity=0.329 Sum_probs=89.8
Q ss_pred CCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc
Q 004147 111 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 190 (771)
Q Consensus 111 ~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~ 190 (771)
+|.|++.... .+..++++-.| . +|+||+.|. .|-|+-++-+.-.|.++.++
T Consensus 12 ~P~T~vs~~~---------~~i~~f~~~~~----~-~VlKPl~g~-----------gG~gV~~i~~~~~n~~~i~e---- 62 (173)
T PF02955_consen 12 IPPTLVSRDK---------EEIRAFIEEHG----D-IVLKPLDGM-----------GGRGVFRISRDDPNLNSILE---- 62 (173)
T ss_dssp S--EEEES-H---------HHHHHHHHHHS----S-EEEEESS-------------TTTT-EEE-TT-TTHHHHHH----
T ss_pred CcCEEEECCH---------HHHHHHHHHCC----C-EEEEECCCC-----------CCcCEEEEcCCCCCHHHHHH----
Confidence 5888887532 12344554344 2 999999997 34444322222122222222
Q ss_pred ccccC--cceEEeeccCC-CCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh--
Q 004147 191 RVRRE--GSYIYEEFMPT-GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-- 265 (771)
Q Consensus 191 ~~r~~--gsyIyEEFi~t-~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~af-- 265 (771)
..-.+ ..++.|+|+++ ..-|.|+++++++++||..|.+. .|+||.|.+-|+...++.||++|.+||.+++..+
T Consensus 63 ~~~~~~~~~~mvQ~flp~i~~GDkRii~~nG~~~~av~R~P~--~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~ 140 (173)
T PF02955_consen 63 TLTKNGERPVMVQPFLPEIKEGDKRIILFNGEPSHAVRRIPA--KGDFRSNLAAGGSAEPAELTEREREICEQIGPKLRE 140 (173)
T ss_dssp HHTTTTTS-EEEEE--GGGGG-EEEEEEETTEE-SEEEEE----SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccEEEEeccccccCCCEEEEEECCEEhHHeecCCC--CCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhh
Confidence 22233 45999999998 54599999999999999999987 9999999998888899999999999999999877
Q ss_pred -cCceeeEeEEeeCCCcEEEecCCcc
Q 004147 266 -RQAVCGFDLLRCEGRSYVCDVNGWS 290 (771)
Q Consensus 266 -gq~VcGfDLLRs~g~syVcDVNGwS 290 (771)
|+.++|+|++ +.|+.|||=.|
T Consensus 141 ~Gl~f~GiDvi----g~~l~EiNvts 162 (173)
T PF02955_consen 141 DGLLFVGIDVI----GDKLTEINVTS 162 (173)
T ss_dssp TT--EEEEEEE----TTEEEEEE-SS
T ss_pred cCcEEEEEecc----ccceEEEeccC
Confidence 7899999999 46999999655
No 23
>PRK06849 hypothetical protein; Provisional
Probab=99.37 E-value=4.7e-12 Score=137.75 Aligned_cols=194 Identities=16% Similarity=0.239 Sum_probs=128.2
Q ss_pred cceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (771)
+|++|+..+..+.+.++.+.++..-.+..++.+....++||...++.++++|||+|+|..+... ++..
T Consensus 77 id~vIP~~e~~~~~a~~~~~l~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~------------~~l~ 144 (389)
T PRK06849 77 IDLLIPTCEEVFYLSHAKEELSAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTYLITDP------------EAIR 144 (389)
T ss_pred CCEEEECChHHHhHHhhhhhhcCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEeCCH------------HHHH
Confidence 4677776655555555555444444567899999999999999999999999999999998642 1111
Q ss_pred eecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE
Q 004147 137 EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV 216 (771)
Q Consensus 137 ~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytV 216 (771)
.......++|+|+||+.|. .|.|+.+ +.+. ..+. .+ ....+..+|+||||+-....+-+++.
T Consensus 145 ~~~~~~~~~P~vlKP~~~~-----------~~~~v~~----~~~~-~~l~-~~-~~~~~~~~ivQe~I~G~e~~~~~~~~ 206 (389)
T PRK06849 145 NFMFKTPHTPYVLKPIYSR-----------FVRRVDL----LPKE-AALK-EL-PISKDNPWVMQEFIQGKEYCSYSIVR 206 (389)
T ss_pred HHhhcCCCCcEEEEeCccc-----------CCCeEEE----ecCH-HHhc-cc-ccCCCCCeEEEEEecCCeEEEEEEEE
Confidence 1111112589999999986 3444432 2221 1111 00 11234569999999965555777778
Q ss_pred CCceeEEEeeeCCCCCCeeeecCCCC-ceeeeeeCCHHHHHHHHHHHHHhcCc-eeeEeEEee-CCCcEEEecC
Q 004147 217 GPEYAHAEARKSPVVDGVVMRNPDGK-EVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVN 287 (771)
Q Consensus 217 G~~~vhAe~RKSP~~DG~vrrN~~gk-e~r~pv~Lt~eEk~iA~ka~~afgq~-VcGfDLLRs-~g~syVcDVN 287 (771)
++++++...... .... .++ .+.+.....++-.++|.++++++|.. +++||++.+ +|+.|++|||
T Consensus 207 ~G~v~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~G~~~~df~~~~~g~~~~iEiN 273 (389)
T PRK06849 207 SGELRAHSCYKP-----EYCA--GSGAQIAFQPINHPRIEEFVTHFVKELNYTGQISFDFIETENGDAYPIECN 273 (389)
T ss_pred CCEEEEEEEeec-----cccC--CCCceeEeEECCcHHHHHHHHHHHHhcCceeEEEEEEEECCCCCEEEEEec
Confidence 887665443321 1111 121 12222234788899999999999977 999999998 6789999999
No 24
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.35 E-value=1.5e-11 Score=132.69 Aligned_cols=190 Identities=14% Similarity=0.160 Sum_probs=123.3
Q ss_pred HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 004147 72 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (771)
Q Consensus 72 kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (771)
....+++..+ ||+-++..+..+++||..+.++|+++|||+|++..+.+..- +...++.+.. -..++.|+|+|
T Consensus 105 ~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~------~~~~~~~~~~-~~~l~~PvvVK 177 (347)
T PRK14572 105 RIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFFELEKLKY------LNSPRKTLLK-LESLGFPQFLK 177 (347)
T ss_pred HHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEEcccc------ccChHHHHHH-HHhcCCCEEEe
Confidence 3566777887 55567889999999999999999999999999999865310 0001111111 12357899999
Q ss_pred ecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECC----ce---eE
Q 004147 151 PVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP----EY---AH 222 (771)
Q Consensus 151 pv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~----~~---vh 222 (771)
|++|. ..+|++.. +. ..|-+.+.. .+..+..+|+||||+ |+++.|-++|. +. +.
T Consensus 178 P~~ggsS~GV~~v~--~~----~el~~a~~~----------~~~~~~~vlVEefI~--G~E~sv~vi~~~~~g~~~~~~l 239 (347)
T PRK14572 178 PVEGGSSVSTYKIT--NA----EQLMTLLAL----------IFESDSKVMSQSFLS--GTEVSCGVLERYRGGKRNPIAL 239 (347)
T ss_pred cCCCCCCCCEEEEC--CH----HHHHHHHHH----------HHhcCCCEEEEcCcc--cEEEEEEEEeCccCCCCCceec
Confidence 99974 33333322 21 112111110 112355789999995 89999999973 21 11
Q ss_pred --EEeeeCCCCCCe---eeecCCCCce--eeeeeCCHH----HHHHHHHHHHHhcCc-eeeEeEEeeCCCcEEEecCCcc
Q 004147 223 --AEARKSPVVDGV---VMRNPDGKEV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNGWS 290 (771)
Q Consensus 223 --Ae~RKSP~~DG~---vrrN~~gke~--r~pv~Lt~e----Ek~iA~ka~~afgq~-VcGfDLLRs~g~syVcDVNGwS 290 (771)
.|-+ | .|. ++...+.++. ..|..|+++ -+++|.++++++|.. ++++|++-++|++||+|||.-+
T Consensus 240 ~~~ei~--~--~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~~~~vlEiNt~P 315 (347)
T PRK14572 240 PATEIV--P--GGEFFDFESKYKQGGSEEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVDGEPHILETNTLP 315 (347)
T ss_pred ccEEEe--c--CCCccCHHHccCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEECCcEEEEeeeCCC
Confidence 2222 2 222 3333333332 246667765 588999999999965 9999999988889999999554
No 25
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.34 E-value=6.8e-12 Score=132.09 Aligned_cols=193 Identities=23% Similarity=0.297 Sum_probs=124.8
Q ss_pred cceeeccccCCCCh-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 004147 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (771)
Q Consensus 57 cd~lIsf~s~GfpL-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (771)
+|.+|+.+....++ .+..+.++..+ +++.|+.+...+++||....++|+++|||+|++..+... ++
T Consensus 70 id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~~ 137 (326)
T PRK12767 70 IDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSYLPESL------------ED 137 (326)
T ss_pred CCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEEcccCH------------HH
Confidence 45666543323222 22223334444 467899999999999999999999999999999887542 12
Q ss_pred eee-ecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 004147 135 FVE-VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (771)
Q Consensus 135 ~i~-v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKV 213 (771)
... ..-..++.|+|+||.+|. .|.|+. + +.|.. ++.. .++....+|.||||.-..-.+-+
T Consensus 138 ~~~~~~~~~~~~P~viKP~~g~-----------~s~gv~-~---v~~~~-el~~---~~~~~~~~lvqeyi~G~e~~v~~ 198 (326)
T PRK12767 138 FKAALAKGELQFPLFVKPRDGS-----------ASIGVF-K---VNDKE-ELEF---LLEYVPNLIIQEFIEGQEYTVDV 198 (326)
T ss_pred HHhhhhcccCCCCEEEEeCCCC-----------CccCeE-E---eCCHH-HHHH---HHHhCCCeEEEeccCCceEEEEE
Confidence 111 011235689999999886 333332 1 22211 1110 22233489999999434455566
Q ss_pred EEE-CCceeEEEeeeC-CCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEEEecCC
Q 004147 214 YTV-GPEYAHAEARKS-PVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNG 288 (771)
Q Consensus 214 ytV-G~~~vhAe~RKS-P~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~afgq-~VcGfDLLRs~g~syVcDVNG 288 (771)
|+. ++++++...++. ....| ......+...++-+++|.++++++|. .+++||++...|++||+|+|.
T Consensus 199 ~~~~~G~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~g~~~viEiNp 268 (326)
T PRK12767 199 LCDLNGEVISIVPRKRIEVRAG--------ETSKGVTVKDPELFKLAERLAEALGARGPLNIQCFVTDGEPYLFEINP 268 (326)
T ss_pred EEcCCCCEEEEEEeeeeeecCC--------ceeEEEEcCCHHHHHHHHHHHHhcCCeeeEEEEEEEECCeEEEEEEeC
Confidence 666 677777666653 11111 11222334568889999999999999 599999999999999999995
No 26
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.33 E-value=1e-11 Score=133.91 Aligned_cols=193 Identities=19% Similarity=0.270 Sum_probs=122.6
Q ss_pred cceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL-~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
||.+++-+. .++. .+++.++..+.++.++.++..+++||....+.| +++|||+|++..+... ++.
T Consensus 63 id~v~~~~e-~v~~-~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~~~~~~------------~~~ 128 (380)
T TIGR01142 63 PDYIVPEIE-AIAT-DALFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLPTSRYMFADSL------------DEL 128 (380)
T ss_pred CCEEEeccC-ccCH-HHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCCCCCceEeCCH------------HHH
Confidence 555554332 2443 345567777777889999999999999999975 8999999999988642 122
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccccc-----ccCcceEEeeccCCCCce
Q 004147 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-----RREGSYIYEEFMPTGGTD 210 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~-----r~~gsyIyEEFi~t~G~D 210 (771)
... ...+++|+|+||++|. .|.|+. +.+ |... +..-.... ..++.+|+||||+ .+..
T Consensus 129 ~~~-~~~~g~P~VvKP~~g~-----------~s~gv~-~v~---~~~e-l~~~~~~~~~~~~~~~~~~ivEe~i~-~~~E 190 (380)
T TIGR01142 129 REA-VEKIGYPCVVKPVMSS-----------SGKGQS-VVR---GPED-IEKAWEYAQEGARGGAGRVIVEEFID-FDYE 190 (380)
T ss_pred HHH-HHHcCCCEEEEECCCc-----------CCCCeE-EEC---CHHH-HHHHHHHHHhhccCCCCCEEEEEecC-CCEE
Confidence 111 1235689999999986 233332 111 1111 00000000 1245799999996 3578
Q ss_pred eEEEEE---CCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHhcC-ceeeEeEEeeCCCcE
Q 004147 211 VKVYTV---GPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRCEGRSY 282 (771)
Q Consensus 211 IKVytV---G~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs~g~sy 282 (771)
+-|.++ +++.+.. .| .+.+..+..-.+...|..|+++. +++|.++++++|. .++++|++-+++++|
T Consensus 191 ~sv~~~~~~~g~~~~~----~~--~~~~~~~~~~~~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~~~~ 264 (380)
T TIGR01142 191 ITLLTVRHVDGNTTFC----AP--IGHRQIDGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGDEVI 264 (380)
T ss_pred EEEEEEEcCCCCEEEe----cC--cceEEeCCeeEEEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCcEE
Confidence 888776 3332221 12 12222222212334677788764 5788899999997 788999999988999
Q ss_pred EEecC
Q 004147 283 VCDVN 287 (771)
Q Consensus 283 VcDVN 287 (771)
|+|||
T Consensus 265 viEin 269 (380)
T TIGR01142 265 FSEVS 269 (380)
T ss_pred EEEee
Confidence 99999
No 27
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.32 E-value=1.7e-11 Score=131.51 Aligned_cols=206 Identities=18% Similarity=0.246 Sum_probs=127.9
Q ss_pred ccceeeccccCCCChH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 004147 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (771)
.+|+.+.-..-.+..+ ...++++..+ ||+=++..+..+++||..+.++|+++|||+|++..+.... +..
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~~~~~~~---------~~~ 151 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGD---------WEE 151 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEEeccc---------cch
Confidence 5677665532212222 3556777777 5666788999999999999999999999999999986531 000
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 004147 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (771)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIK 212 (771)
..+..-...++.|+|+||.+|. .+.|+. ++.+.. ++..-+. ..+.+..+|+||||+ |+++.
T Consensus 152 ~~~~~~~~~~~~P~vVKP~~~g-----------sS~Gv~----~v~~~~-el~~a~~~~~~~~~~vlvEefI~--G~E~~ 213 (333)
T PRK01966 152 ASLAEIEAKLGLPVFVKPANLG-----------SSVGIS----KVKNEE-ELAAALDLAFEYDRKVLVEQGIK--GREIE 213 (333)
T ss_pred hhHHHHHHhcCCCEEEEeCCCC-----------CccCEE----EECCHH-HHHHHHHHHHhcCCcEEEEcCcC--CEEEE
Confidence 0111011246789999999975 233332 122111 1111011 123467899999998 89999
Q ss_pred EEEECCc-eeEEEeeeCCCCCCee--eecC-CC-CceeeeeeCCHH----HHHHHHHHHHHhcC-ceeeEeEEee-CCCc
Q 004147 213 VYTVGPE-YAHAEARKSPVVDGVV--MRNP-DG-KEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRC-EGRS 281 (771)
Q Consensus 213 VytVG~~-~vhAe~RKSP~~DG~v--rrN~-~g-ke~r~pv~Lt~e----Ek~iA~ka~~afgq-~VcGfDLLRs-~g~s 281 (771)
|-++|.+ .+......-+. ++-+ .... .| .+...|..|+++ -+++|.++++++|. .+|.+|++-. +|++
T Consensus 214 v~vl~~~~~~~~~~ei~~~-~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~ 292 (333)
T PRK01966 214 CAVLGNDPKASVPGEIVKP-DDFYDYEAKYLDGSAELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEI 292 (333)
T ss_pred EEEECCCCeEcccEEEecC-CceEcHHHccCCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCE
Confidence 9999952 11111111110 1111 1111 12 233456777765 46899999999996 7999999987 4568
Q ss_pred EEEecCCc
Q 004147 282 YVCDVNGW 289 (771)
Q Consensus 282 yVcDVNGw 289 (771)
||+|||--
T Consensus 293 ~vlEiNt~ 300 (333)
T PRK01966 293 YLNEINTM 300 (333)
T ss_pred EEEEeeCC
Confidence 99999944
No 28
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.28 E-value=1.3e-10 Score=125.26 Aligned_cols=199 Identities=15% Similarity=0.248 Sum_probs=129.1
Q ss_pred ccceeeccccCCCChH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 004147 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (771)
.+|+.+.-..-++--+ ....++++.+ ||+-++..+..+++||..+.++|+++|||+|++.++.+..
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~~~~~~~------------ 157 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFWTVTADE------------ 157 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEECCc------------
Confidence 3666554432223333 5667778888 6677899999999999999999999999999999986520
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 004147 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (771)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIK 212 (771)
+ + ....+++|+|+||.+|. .+-|+. ++.|... +..-+. ..+.+..+|+||||+ |+++-
T Consensus 158 ~-~--~~~~l~~P~iVKP~~~g-----------sS~Gv~----~v~~~~e-L~~a~~~a~~~~~~vlVEe~I~--G~E~s 216 (343)
T PRK14568 158 R-P--DAATLTYPVFVKPARSG-----------SSFGVS----KVNSADE-LDYAIESARQYDSKVLIEEAVV--GSEVG 216 (343)
T ss_pred h-h--hhhhcCCCEEEEeCCCC-----------CCCCEE----EeCCHHH-HHHHHHHHHhcCCcEEEECCcC--CEEEE
Confidence 0 1 11346789999999974 222332 1222111 110000 123456789999996 89999
Q ss_pred EEEECCc---eeEEEeeeCCCCCCeeeec----CC----CCceeeeeeCCHH----HHHHHHHHHHHhcC-ceeeEeEEe
Q 004147 213 VYTVGPE---YAHAEARKSPVVDGVVMRN----PD----GKEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLR 276 (771)
Q Consensus 213 VytVG~~---~vhAe~RKSP~~DG~vrrN----~~----gke~r~pv~Lt~e----Ek~iA~ka~~afgq-~VcGfDLLR 276 (771)
|-++|.. .+....+..+. .|.++.. .. ......|..|+++ -+++|.++++++|. .+|.||++-
T Consensus 217 v~vl~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l 295 (343)
T PRK14568 217 CAVLGNGADLVVGEVDQIRLS-HGFFRIHQENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFL 295 (343)
T ss_pred EEEEcCCCCcceecceEEecC-CCccchhhhhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 9888753 22222333321 2333211 11 1123467778765 46899999999999 799999998
Q ss_pred e-CCCcEEEecCC
Q 004147 277 C-EGRSYVCDVNG 288 (771)
Q Consensus 277 s-~g~syVcDVNG 288 (771)
+ +|.+||+|||-
T Consensus 296 ~~~g~~~llEINt 308 (343)
T PRK14568 296 QEDGTVVLNEVNT 308 (343)
T ss_pred eCCCCEEEEEeeC
Confidence 7 56688999994
No 29
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.26 E-value=1e-10 Score=127.93 Aligned_cols=192 Identities=14% Similarity=0.166 Sum_probs=121.5
Q ss_pred HHHHHHHhcCCcccCCc-hhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 004147 72 KAESYATLRKPFLVNEL-EPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (771)
Q Consensus 72 kai~y~~lr~p~~iNdl-~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (771)
.+..++++.+.+.++.- .+..+++||..+.++|+++|||||++..+.+... +...++...-....++.|+|+|
T Consensus 104 ~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~------~~~~~~~~~~~~~~lg~PviVK 177 (364)
T PRK14570 104 AIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDY------FLDKEGIKKDIKEVLGYPVIVK 177 (364)
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEecccc------ccchHHHHHHHHHhcCCCEEEE
Confidence 66788999997666665 6999999999999999999999999887754210 0011111111112467899999
Q ss_pred eccc-cCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEE---Eee
Q 004147 151 PVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHA---EAR 226 (771)
Q Consensus 151 pv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhA---e~R 226 (771)
|..+ +..+|.+-.... .|-..+. ..++.+..+|+||||. |+++.|-++|+....+ ...
T Consensus 178 P~~~GsS~Gv~~v~~~~------el~~al~----------~a~~~~~~vlVEefI~--GrEi~v~Vlg~~~~~v~~~~Ei 239 (364)
T PRK14570 178 PAVLGSSIGINVAYNEN------QIEKCIE----------EAFKYDLTVVIEKFIE--AREIECSVIGNEQIKIFTPGEI 239 (364)
T ss_pred eCCCCCCCcEEEeCCHH------HHHHHHH----------HHHhCCCCEEEECCcC--CEEEEEEEECCCCceEeeeEEE
Confidence 9985 323332221111 1111110 0123455689999997 9999999999753221 111
Q ss_pred eCCCCCCee---ee--cCC-CCcee--eeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEee--CCCcEEEecCCc
Q 004147 227 KSPVVDGVV---MR--NPD-GKEVR--YPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRC--EGRSYVCDVNGW 289 (771)
Q Consensus 227 KSP~~DG~v---rr--N~~-gke~r--~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs--~g~syVcDVNGw 289 (771)
... ++.| +. ..+ |+... -|..|++ +-+++|.++++++|. .+|.||++-+ +|.+||+|||--
T Consensus 240 ~~~--~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~g~~yvlEiNt~ 315 (364)
T PRK14570 240 VVQ--DFIFYDYDAKYSTIPGNSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDTGLIYLNEINTI 315 (364)
T ss_pred EeC--CCCccCHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCCCcEEEEEeeCC
Confidence 110 1111 11 111 33222 2556665 678899999999999 6999999887 367999999944
No 30
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.21 E-value=8.8e-11 Score=128.49 Aligned_cols=190 Identities=16% Similarity=0.188 Sum_probs=121.1
Q ss_pred HHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 004147 72 KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (771)
Q Consensus 72 kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (771)
....+++..+. +.-.+..+..+.+||..+.++|+++|||+|++..+... ++....- ..+++|+|+|
T Consensus 42 ~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~~~------------~ea~~~~-~~~g~PvVvK 108 (379)
T PRK13790 42 GLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERK------------KDALTYI-ENCELPVVVK 108 (379)
T ss_pred HHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEECCH------------HHHHHHH-HhcCCCEEEE
Confidence 44667778884 44467788899999999999999999999998877532 1222211 1356899999
Q ss_pred ecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeE--EEeee
Q 004147 151 PVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAH--AEARK 227 (771)
Q Consensus 151 pv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vh--Ae~RK 227 (771)
|..+. -.++.+...... ....++.+ + ....++.+|+||||.-.--.|-+++-|..++. +..++
T Consensus 109 p~~~~~gkGV~iv~~~~e---l~~a~~~~------~-----~~~~~~~vlvEe~i~G~E~sv~~~~~g~~~~~~~~~~~~ 174 (379)
T PRK13790 109 KDGLAAGKGVIIADTIEA---ARSAIEIM------Y-----GDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQD 174 (379)
T ss_pred eCCCCCCCCEEEECCHHH---HHHHHHHH------H-----hcCCCCeEEEEEcccCceEEEEEEeeCCEEEeccccccc
Confidence 99875 133332222111 11111111 0 01234579999999766677888887765432 22332
Q ss_pred CC-CCCCeeeecCCCCceeeee-eCCHHH-----HHHHHHHHHHh---cCceee---EeEEeeCCCcEEEecCC
Q 004147 228 SP-VVDGVVMRNPDGKEVRYPV-LLTPNE-----KQMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVNG 288 (771)
Q Consensus 228 SP-~~DG~vrrN~~gke~r~pv-~Lt~eE-----k~iA~ka~~af---gq~VcG---fDLLRs~g~syVcDVNG 288 (771)
.. ..+|+..-|+.|-+.-.|+ .++++. ++||.++++++ |..++| +|++-+.+++||+|||.
T Consensus 175 ~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g~~viEiN~ 248 (379)
T PRK13790 175 HKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNA 248 (379)
T ss_pred ccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCeEEEEEEc
Confidence 21 2366666666433333344 467654 68899999998 545566 59988888899999996
No 31
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.17 E-value=2.8e-10 Score=122.44 Aligned_cols=194 Identities=20% Similarity=0.302 Sum_probs=120.1
Q ss_pred cceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (771)
||++ ++-...+|. .++++++..+..+.++.++..+++||....+.|+++|||+|++..+... ++..
T Consensus 61 ~dvi-t~e~e~i~~-~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~~~ 126 (352)
T TIGR01161 61 CDVI-TFEFEHVDV-EALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDE------------EELD 126 (352)
T ss_pred CCEE-EeCcCcCCH-HHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCH------------HHHH
Confidence 5653 444445554 4556677776667899999999999999999999999999999998642 1111
Q ss_pred eecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE
Q 004147 137 EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV 216 (771)
Q Consensus 137 ~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytV 216 (771)
.. -..+++|+|+||.+|. +.|.|+. . +.|.+. +..-...+ .+..+|.||||+- |..+-|.++
T Consensus 127 ~~-~~~~g~P~vvKp~~~g----------~~g~Gv~-~---v~~~~e-l~~a~~~~-~~~~~lvEe~I~~-~~E~sv~~~ 188 (352)
T TIGR01161 127 AA-LQELGFPVVLKARTGG----------YDGRGQY-R---IRNEAD-LPQAAKEL-GDRECIVEEFVPF-ERELSVIVA 188 (352)
T ss_pred HH-HHHcCCCEEEEeCCCC----------CCCCCEE-E---ECCHHH-HHHHHHhc-CCCcEEEEecCCC-CeEEEEEEE
Confidence 11 1234689999999863 0122332 1 222111 11000011 2347999999973 677777665
Q ss_pred C---CceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCC-cEEEecC
Q 004147 217 G---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVCDVN 287 (771)
Q Consensus 217 G---~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~g~-syVcDVN 287 (771)
. +++.. -|.... ..++-.......|..+++ +-+++|.++++++|. .++++|++.+.++ +||+|||
T Consensus 189 ~~~~G~~~~-----~~~~~~-~~~~g~~~~~~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~dg~~~v~Ein 262 (352)
T TIGR01161 189 RSADGETAF-----YPVVEN-IHQDGILRYVVAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPDGRLLINELA 262 (352)
T ss_pred EcCCCCEEE-----ECCccc-EEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCCCcEEEEEec
Confidence 2 23221 232221 112111111223555654 357889999999998 4999999998555 9999999
Q ss_pred C
Q 004147 288 G 288 (771)
Q Consensus 288 G 288 (771)
-
T Consensus 263 p 263 (352)
T TIGR01161 263 P 263 (352)
T ss_pred C
Confidence 4
No 32
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.17 E-value=1.2e-10 Score=111.23 Aligned_cols=162 Identities=23% Similarity=0.299 Sum_probs=95.0
Q ss_pred HhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHH
Q 004147 93 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMK 172 (771)
Q Consensus 93 ~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~ 172 (771)
++.||...++++.+.|||+|++..+.... +..+.+. .++.|+|+||..|. .|.|+.
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~~~~~~~~---------~~~~~~~----~~~~p~vvKp~~g~-----------gs~gv~ 56 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKTRIVDSEE---------ELRAFAE----DLGFPFVVKPVDGS-----------GSRGVF 56 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----EEEECSHH---------HHHHHHH----HSSSSEEEEESS-S-----------TTTT-E
T ss_pred CCCCHHHHHHHHHHcCcCCCCEEEECCHH---------HHHHHHH----HcCCCEEEEcCccc-----------cCCCEE
Confidence 36799999999999999999999986530 1122222 22379999999996 233332
Q ss_pred HHhhhcCCCccccccccccc-----ccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCC---Cce
Q 004147 173 ELFRKVGNRSSEFHPDVRRV-----RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDG---KEV 244 (771)
Q Consensus 173 rLfrkign~sS~~~~~~~~~-----r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~g---ke~ 244 (771)
+ +.|.+.... -...+ ...+.||.||||+...-.+.+++.+++.+.+...+.- .....+. ...
T Consensus 57 -~---~~~~~~l~~-~~~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~ 126 (184)
T PF13535_consen 57 -I---VHSPEELEA-ALAEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYV-----RQSPGHFSGGVPT 126 (184)
T ss_dssp -E---ESSHHHHHH-HHHHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEE-----EEETCCCSSSEEE
T ss_pred -E---eCCHHHHHH-HHHHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEe-----cccccccccceee
Confidence 1 211111111 00111 1357899999999655677777788886555444331 1112221 233
Q ss_pred eeeeeC----CHHHHHHHHHHHHHhcC--ceeeEeEEeeCCC-cEEEecCC
Q 004147 245 RYPVLL----TPNEKQMAREVCIAFRQ--AVCGFDLLRCEGR-SYVCDVNG 288 (771)
Q Consensus 245 r~pv~L----t~eEk~iA~ka~~afgq--~VcGfDLLRs~g~-syVcDVNG 288 (771)
.+.... .++-++.+.++++++|. .++++|++...++ .|++|||.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~g~~~~iEiN~ 177 (184)
T PF13535_consen 127 GYSVPSEPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPDGELYFIEINP 177 (184)
T ss_dssp EEEES--CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETCCEEEEEEEES
T ss_pred eeecccccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCCCCEEEEEECc
Confidence 333322 27788899999999997 9999999999767 58999995
No 33
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=99.11 E-value=3.8e-10 Score=121.30 Aligned_cols=259 Identities=22% Similarity=0.353 Sum_probs=153.1
Q ss_pred CCeeEEEEeecCCccCChhHHHHHHHHhhcCCeEEEEeCccccccCCCCCCCccceeeccccCCCChHHHHHHHHhcC-C
Q 004147 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRK-P 82 (771)
Q Consensus 4 ~~~~~iGvCam~~Ka~SkPm~~IL~rl~~~~~f~~iiF~d~~IL~~~ve~WP~cd~lIsf~s~GfpL~kai~y~~lr~-p 82 (771)
.+..+||.|--.+|.+|==-+.. --+.+...+++|=-. ++.|+++==-.||+|=-..+.-=.....+|.+.+- .
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~~-~~~~~~~gi~~v~id----~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v 79 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPSF-IDLARSRGIDFVPID----LSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEV 79 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCHH-CCCCCCCTTEEEEEE----CCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTS
T ss_pred ccceEEEEEECHHHHHHhhHHHH-HHHHHhcCCEEEEcC----CCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCe
Confidence 46789998887777654322222 233444457766544 34455444337999987776433356677777632 4
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhC-------CCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc-
Q 004147 83 FLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG- 154 (771)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~~qiL~~~-------gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G- 154 (771)
.+|..+++++.+.||...|++|++. +|.+|+.+++..+ +. +..+. +.-.-+..|+|.||+-+
T Consensus 80 ~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~-~~-------~~~~~--l~~agL~fPlI~KPlvA~ 149 (307)
T PF05770_consen 80 VVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSD-AE-------SLPEL--LKEAGLKFPLICKPLVAC 149 (307)
T ss_dssp EEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSS-HC-------CHHHH--HHCTTS-SSEEEEESB-S
T ss_pred EEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCC-HH-------HHHHH--HHHCCCcccEEeeehhhc
Confidence 7788899999999999999988874 7899999999854 11 11122 22334789999999984
Q ss_pred ---cCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeC-CC
Q 004147 155 ---DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS-PV 230 (771)
Q Consensus 155 ---edHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKS-P~ 230 (771)
+-|...|-|... |-.. + ....+.||||.-+|.=-||||||+. ++...|+| |-
T Consensus 150 Gsa~SH~Maivf~~~---gL~~-----------L---------~~P~VlQeFVNHggvLfKVyVvGd~-v~~v~R~SLpn 205 (307)
T PF05770_consen 150 GSADSHKMAIVFNEE---GLKD-----------L---------KPPCVLQEFVNHGGVLFKVYVVGDK-VFVVKRPSLPN 205 (307)
T ss_dssp STSCCCEEEEE-SGG---GGTT----------------------SSEEEEE----TTEEEEEEEETTE-EEEEEEE----
T ss_pred CCccceEEEEEECHH---HHhh-----------c---------CCCEEEEEeecCCCEEEEEEEecCE-EEEEECCCCCC
Confidence 457777777543 2221 1 1235999999999999999999977 55566666 32
Q ss_pred C-CCee-------e----ecCCCCce-------eeeeeCC--HHHHHHHHHHHHHhcCceeeEeEEeeCC---CcEEEec
Q 004147 231 V-DGVV-------M----RNPDGKEV-------RYPVLLT--PNEKQMAREVCIAFRQAVCGFDLLRCEG---RSYVCDV 286 (771)
Q Consensus 231 ~-DG~v-------r----rN~~gke~-------r~pv~Lt--~eEk~iA~ka~~afgq~VcGfDLLRs~g---~syVcDV 286 (771)
+ .|.. . ++.+-... ...+.+. +.-+++|..+-+++|++..|||++|.++ +.||+||
T Consensus 206 ~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDI 285 (307)
T PF05770_consen 206 VSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDI 285 (307)
T ss_dssp --SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEE
T ss_pred CCcccccccccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEe
Confidence 2 1111 1 11110000 0112221 2347899999999999999999999854 4789999
Q ss_pred CCccccccccccHHH
Q 004147 287 NGWSFVKNSYKYYDD 301 (771)
Q Consensus 287 NGwSFVK~n~kYYdd 301 (771)
|=|+=+|+-..|+..
T Consensus 286 NyFPgY~~vp~f~~~ 300 (307)
T PF05770_consen 286 NYFPGYKKVPDFESV 300 (307)
T ss_dssp EES--TTTSCTHHHH
T ss_pred ccCCCccCCCChHHH
Confidence 999888998999843
No 34
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.10 E-value=4.4e-10 Score=121.87 Aligned_cols=197 Identities=17% Similarity=0.246 Sum_probs=120.9
Q ss_pred cceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHH-hCCCCCCCEEEEeccCCCccccccccccce
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLE-KYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~-~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
||.+|+.... ++... ++.+...+..+..+.++..+++||....+.|. ++|||+|++..+... ++.
T Consensus 76 id~vi~~~e~-~~~~~-~~~l~~~g~~~~~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~~~~s~------------~~l 141 (395)
T PRK09288 76 PDYIVPEIEA-IATDA-LVELEKEGFNVVPTARATRLTMNREGIRRLAAEELGLPTSPYRFADSL------------EEL 141 (395)
T ss_pred CCEEEEeeCc-CCHHH-HHHHHhcCCeeCCCHHHHHHHhCHHHHHHHHHHhCCCCCCCceEECCH------------HHH
Confidence 6777765543 34433 44455567666788999999999999999985 789999999888642 222
Q ss_pred eeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHHHhhhcCCCcccccccccccc-cCcceEEeeccCCCCceeEE
Q 004147 136 VEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKV 213 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-~~gsyIyEEFi~t~G~DIKV 213 (771)
.+.. ..+++|+|+||..|.+ .++++...... ..+.++.+.. .-| ..+.+|+||||+ .|..+-|
T Consensus 142 ~~~~-~~~g~P~VvKP~~g~~s~Gv~~v~~~~e---l~~~~~~~~~----------~~~~~~~~~lvEefi~-~~~E~sv 206 (395)
T PRK09288 142 RAAV-EEIGYPCVVKPVMSSSGKGQSVVRSPED---IEKAWEYAQE----------GGRGGAGRVIVEEFID-FDYEITL 206 (395)
T ss_pred HHHH-HhcCCCEEEEeCCCcCCCCeEEECCHHH---HHHHHHHHHh----------hccccCCCEEEEEecC-CCEEEEE
Confidence 2211 2356899999998861 22222221111 1112221100 001 236799999997 3667777
Q ss_pred EEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhcC-ceeeEeEEeeCCCcEEEe
Q 004147 214 YTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQ-AVCGFDLLRCEGRSYVCD 285 (771)
Q Consensus 214 ytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk----~iA~ka~~afgq-~VcGfDLLRs~g~syVcD 285 (771)
.++.. ..... .| . +.++.+-+-.+.-.|..|+++.. ++|.++++++|. .++.+|++.+++++||+|
T Consensus 207 ~~~~~~~~~~~~~----~~-~-~~~~~~~~~~~~~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~~~~viE 280 (395)
T PRK09288 207 LTVRAVDGGTHFC----AP-I-GHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGDEVYFSE 280 (395)
T ss_pred EEEEcCCCCEEEe----cC-c-ccEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCeEEEEE
Confidence 76642 22222 12 1 22222211122335777887654 589999999984 467799999888999999
Q ss_pred cCC
Q 004147 286 VNG 288 (771)
Q Consensus 286 VNG 288 (771)
+|.
T Consensus 281 inp 283 (395)
T PRK09288 281 VSP 283 (395)
T ss_pred ecC
Confidence 994
No 35
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.09 E-value=5.2e-10 Score=123.18 Aligned_cols=190 Identities=15% Similarity=0.182 Sum_probs=113.9
Q ss_pred HHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeec
Q 004147 74 ESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPV 152 (771)
Q Consensus 74 i~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv 152 (771)
.+.++..+ |+.-++.....+++||..+.+.|+++|||+|++..+... ++....- ..+++|+|+||.
T Consensus 79 ~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~~~~~~-~~~~~P~VvKP~ 145 (420)
T PRK00885 79 VDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYETFTDA------------EEALAYL-DEKGAPIVVKAD 145 (420)
T ss_pred HHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH------------HHHHHHH-HHcCCCEEEEeC
Confidence 44555666 445578888999999999999999999999999887532 1221111 134689999999
Q ss_pred ccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEE--EEECCceeE-EEeee-
Q 004147 153 HGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV--YTVGPEYAH-AEARK- 227 (771)
Q Consensus 153 ~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKV--ytVG~~~vh-Ae~RK- 227 (771)
.|. -.++++...... ....++.+-+. +.+. +..+.+|+||||+ |..+-| ++-|..+.. ...|.
T Consensus 146 ~~~gs~Gv~~v~~~~e---l~~~~~~~~~~-~~~~------~~~~~vlvEe~i~--G~E~sv~~~~~g~~~~~~~~~~~~ 213 (420)
T PRK00885 146 GLAAGKGVVVAMTLEE---AKAAVDDMLAG-NKFG------DAGARVVIEEFLD--GEEASFFAFVDGENVLPLPTAQDH 213 (420)
T ss_pred CCCCCCcEEEeCCHHH---HHHHHHHHhhc-cccc------CCCCeEEEEEccC--CcEEEEEEEECCCceEeceeeEee
Confidence 875 122222221110 11122211100 0000 1345799999997 455444 443443322 22222
Q ss_pred CCCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHhc---C---ceeeEeEEeeCCCcEEEecCC
Q 004147 228 SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAFR---Q---AVCGFDLLRCEGRSYVCDVNG 288 (771)
Q Consensus 228 SP~~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~~afg---q---~VcGfDLLRs~g~syVcDVNG 288 (771)
....+|.+.-|+.|-+.-.|.. |+++.. +|+.++.++++ . .++.+|++.+.+++||+|+|.
T Consensus 214 ~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g~~viEin~ 286 (420)
T PRK00885 214 KRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDGPKVIEFNA 286 (420)
T ss_pred eecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCCcEEEEEec
Confidence 1123666666666655556765 777543 36666767654 3 567789999989999999994
No 36
>PRK07206 hypothetical protein; Provisional
Probab=99.06 E-value=1.7e-09 Score=118.17 Aligned_cols=207 Identities=14% Similarity=0.162 Sum_probs=121.8
Q ss_pred cceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (771)
+|.+|+..-.+.++...+ .+..++...|+......++||....+.|+++|||+|++..+... . +..+++
T Consensus 71 ~d~vi~~~e~~~~~~a~l--~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~~~~~~--~-------e~~~~~ 139 (416)
T PRK07206 71 PEAIIAGAESGVELADRL--AEILTPQYSNDPALSSARRNKAEMINALAEAGLPAARQINTADW--E-------EAEAWL 139 (416)
T ss_pred CCEEEECCCccHHHHHHH--HHhcCCCcCCChhhHHHhhCHHHHHHHHHHcCCCcccEEecCCH--H-------HHHHHH
Confidence 588888655555553322 34455556899999999999999999999999999999988542 0 112222
Q ss_pred eecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 004147 137 EVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (771)
Q Consensus 137 ~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVyt 215 (771)
.-.| -++.|+|+||++|. -.++++...... .+..++.+-+..+.+. ..+..+|+||||+-.--.|-+++
T Consensus 140 ~~~g-~~~~P~VvKP~~g~gs~gv~~v~~~~e---l~~~~~~~~~~~~~~~------~~~~~~lvEe~i~G~E~sv~~~~ 209 (416)
T PRK07206 140 RENG-LIDRPVVIKPLESAGSDGVFICPAKGD---WKHAFNAILGKANKLG------LVNETVLVQEYLIGTEYVVNFVS 209 (416)
T ss_pred HhcC-CCCCCEEEeCCCCCCCCCEEEeCCHHH---HHHHHHHHHhccccCC------CCCCeEEEEEccccEEEEEEEEE
Confidence 2111 01349999999975 133333332221 2223332211111010 13467999999974334455566
Q ss_pred ECCceeE-EEee--eCCCCCCeeeecCCCCceeee--eeCCHHHHHHHHHHHHHhcC--ceeeEeEEeeCCCcEEEecC
Q 004147 216 VGPEYAH-AEAR--KSPVVDGVVMRNPDGKEVRYP--VLLTPNEKQMAREVCIAFRQ--AVCGFDLLRCEGRSYVCDVN 287 (771)
Q Consensus 216 VG~~~vh-Ae~R--KSP~~DG~vrrN~~gke~r~p--v~Lt~eEk~iA~ka~~afgq--~VcGfDLLRs~g~syVcDVN 287 (771)
.+++... +..+ +.+.-+|.+..+ ... ..| ....++-.++|.++++++|. .++.+|+..+.++++|+|||
T Consensus 210 ~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g~~liEin 285 (416)
T PRK07206 210 LDGNHLVTEIVRYHKTSLNSGSTVYD--YDE-FLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADGPRLIEIG 285 (416)
T ss_pred ECCEEEEEEeEEeeecccCCCCceec--ccc-cCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCCCEEEEEC
Confidence 6666433 2232 222212221111 000 011 11223445678999999998 57889999998999999999
No 37
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.04 E-value=2.4e-09 Score=116.74 Aligned_cols=206 Identities=19% Similarity=0.245 Sum_probs=125.0
Q ss_pred ccceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
.||++ +|-...+|. .++++++.. ..+.++.++..+++||...-+.|+++|||+|++..+... ++.
T Consensus 63 ~~dvi-t~e~e~i~~-~~l~~l~~~-~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~v~s~------------~~l 127 (372)
T PRK06019 63 QCDVI-TYEFENVPA-EALDALAAR-VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSA------------EDL 127 (372)
T ss_pred cCCEE-EeCcCCCCH-HHHHHHhcC-CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCceEeCCH------------HHH
Confidence 56763 555556665 556666555 567899999999999999999999999999999998642 122
Q ss_pred eeecCeeccCcEEEeeccc-c-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 004147 136 VEVHGNRFWKPFVEKPVHG-D-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~G-e-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKV 213 (771)
... ...++.|+|+||..| . -+++++...... ....+.. + ....+|+||||+- |..+-|
T Consensus 128 ~~~-~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~e---l~~a~~~--------------~-~~~~~ivEe~I~~-~~E~sv 187 (372)
T PRK06019 128 EAA-LADLGLPAVLKTRRGGYDGKGQWVIRSAED---LEAAWAL--------------L-GSVPCILEEFVPF-EREVSV 187 (372)
T ss_pred HHH-HHHcCCcEEEEeCCCCcCCCCeEEECCHHH---HHHHHHh--------------c-CCCCEEEEecCCC-CeEEEE
Confidence 111 123568999999984 3 233333222111 1111211 1 2457999999984 566777
Q ss_pred EEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeCCC-cEEEecC
Q 004147 214 YTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVN 287 (771)
Q Consensus 214 ytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~g~-syVcDVN 287 (771)
.+++.. .-+.+--|+.. .+.+|---.....|..+++ +-+++|.++++++|.. ++++|++.+.++ +||+|+|
T Consensus 188 ~~~~~~--~G~~~~~p~~e-~~~~~gi~~~~~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~dg~~~v~Ein 264 (372)
T PRK06019 188 IVARGR--DGEVVFYPLVE-NVHRNGILRTSIAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTGDGELLVNEIA 264 (372)
T ss_pred EEEECC--CCCEEEeCCcc-cEEeCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcCCCeEEEEEec
Confidence 666431 00111223211 1212100011123445554 5678899999999964 788999998555 9999999
Q ss_pred CccccccccccHHH
Q 004147 288 GWSFVKNSYKYYDD 301 (771)
Q Consensus 288 GwSFVK~n~kYYdd 301 (771)
--. -|+-.|..+
T Consensus 265 pR~--~~sg~~t~~ 276 (372)
T PRK06019 265 PRP--HNSGHWTIE 276 (372)
T ss_pred CCc--cCcccEEhh
Confidence 533 334444433
No 38
>PRK05586 biotin carboxylase; Validated
Probab=98.96 E-value=6.2e-09 Score=116.02 Aligned_cols=205 Identities=18% Similarity=0.238 Sum_probs=119.3
Q ss_pred CccceeeccccCCCCh--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCccccccc
Q 004147 55 PICDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFI 130 (771)
Q Consensus 55 P~cd~lIsf~s~GfpL--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~ 130 (771)
..||++++-| ||-. ...-..++..+ ||+..+.++..+++||....+.|+++|||+|++... -.+
T Consensus 73 ~~~d~i~p~~--~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~---------- 140 (447)
T PRK05586 73 TGAQAIHPGF--GFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIEN---------- 140 (447)
T ss_pred cCCCEEEcCc--cccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCC----------
Confidence 4577777644 3321 12222334455 468899999999999999999999999999987532 111
Q ss_pred cccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCc
Q 004147 131 EEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 209 (771)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~ 209 (771)
.++....- ..+++|+|+||++|. -+++++..... -....|+...+ +. .....++.+|.||||.. ++
T Consensus 141 -~~e~~~~~-~~igyPvvvKP~~gggg~Gv~~v~~~~---el~~a~~~~~~----~~---~~~~~~~~vivEe~i~g-~~ 207 (447)
T PRK05586 141 -EEEALEIA-KEIGYPVMVKASAGGGGRGIRIVRSEE---ELIKAFNTAKS----EA---KAAFGDDSMYIEKFIEN-PK 207 (447)
T ss_pred -HHHHHHHH-HHcCCCEEEEECCCCCCCeeEEECCHH---HHHHHHHHHHH----HH---HHhcCCCeEEEEecCCC-Ce
Confidence 12222211 236799999999986 12222221111 01122221110 00 00012467999999963 46
Q ss_pred eeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCH----HHHHHHHHHHHHhcCceee-EeEEee-CC
Q 004147 210 DVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTP----NEKQMAREVCIAFRQAVCG-FDLLRC-EG 279 (771)
Q Consensus 210 DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv-~Lt~----eEk~iA~ka~~afgq~VcG-fDLLRs-~g 279 (771)
.+-|.+++. ++++.-.|... ..++|..--+.. |. .|++ +-+++|.++++++|..-++ ||++.+ +|
T Consensus 208 ei~v~v~~d~~G~~~~~~~~~~~----~~~~~~~~~~~~-p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~~g 282 (447)
T PRK05586 208 HIEFQILGDNYGNVVHLGERDCS----LQRRNQKVLEEA-PSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDG 282 (447)
T ss_pred EEEEEEEECCCCCEEEEeceecc----eEecccceEEEc-CCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcCCC
Confidence 788877763 55555444221 122221111111 22 4666 3557899999999976555 999987 45
Q ss_pred CcEEEecCCc
Q 004147 280 RSYVCDVNGW 289 (771)
Q Consensus 280 ~syVcDVNGw 289 (771)
.+||+|||.-
T Consensus 283 ~~~~iEvNpR 292 (447)
T PRK05586 283 NFYFMEMNTR 292 (447)
T ss_pred CEEEEEEECC
Confidence 5899999943
No 39
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.96 E-value=5e-09 Score=118.18 Aligned_cols=204 Identities=16% Similarity=0.197 Sum_probs=119.8
Q ss_pred cceeeccccCCCCh--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEE-EeccCCCccccccccc
Q 004147 57 CDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL-VNREVPYQELDYFIEE 132 (771)
Q Consensus 57 cd~lIsf~s~GfpL--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~-~~r~~p~~~~~~~~e~ 132 (771)
+|++++.| ||-. ....+.++..+. |+-++.+...+++||....++|+++|||+|+... .... +.
T Consensus 74 iDaI~pg~--g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~----------~~ 141 (478)
T PRK08463 74 ADAIHPGY--GFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSE----------SM 141 (478)
T ss_pred CCEEEECC--CccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCC----------CH
Confidence 56777654 3311 123444556664 4458899999999999999999999999977443 2211 01
Q ss_pred cceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCcee
Q 004147 133 EDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (771)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DI 211 (771)
++.... -..+++|+|+||++|. ..++.+-..... ....|+... + +......++.++.||||.. ++.+
T Consensus 142 ~~~~~~-~~~igyPvvvKP~~ggGg~Gv~iv~~~~e---L~~a~~~~~---~----~a~~~~~~~~vlvEefI~~-~~~i 209 (478)
T PRK08463 142 EEIKIF-ARKIGYPVILKASGGGGGRGIRVVHKEED---LENAFESCK---R----EALAYFNNDEVFMEKYVVN-PRHI 209 (478)
T ss_pred HHHHHH-HHHhCCCEEEEeCCCCCCCceEEeCCHHH---HHHHHHHHH---H----HHHHhcCCCcEEEEecCCC-CeEE
Confidence 122221 1235699999999985 122222221110 111122110 0 0001124567999999975 6667
Q ss_pred EEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCHHHH----HHHHHHHHHhcCceee-EeEEee-CCCc
Q 004147 212 KVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPNEK----QMAREVCIAFRQAVCG-FDLLRC-EGRS 281 (771)
Q Consensus 212 KVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv-~Lt~eEk----~iA~ka~~afgq~VcG-fDLLRs-~g~s 281 (771)
-+-++|. +++|...|...+ .+++..--+.. |. .|+++.+ ++|.++++++|..-+| ||++.+ +|++
T Consensus 210 ev~v~~d~~g~v~~~~er~~s~----~~~~~~~ie~~-P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~~~~~ 284 (478)
T PRK08463 210 EFQILGDNYGNIIHLCERDCSI----QRRHQKVIEIA-PCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRF 284 (478)
T ss_pred EEEEEEcCCCCEEEEeccCCcc----ccccCceEEEC-CCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCE
Confidence 6666654 466666564321 22222111221 22 4777665 4899999999987666 999987 4789
Q ss_pred EEEecCCc
Q 004147 282 YVCDVNGW 289 (771)
Q Consensus 282 yVcDVNGw 289 (771)
||||||.=
T Consensus 285 y~iEiN~R 292 (478)
T PRK08463 285 YFMEMNTR 292 (478)
T ss_pred EEEEEECC
Confidence 99999953
No 40
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.95 E-value=4.1e-09 Score=126.89 Aligned_cols=202 Identities=14% Similarity=0.095 Sum_probs=127.4
Q ss_pred CCCCCccceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccc
Q 004147 51 IEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 130 (771)
Q Consensus 51 ve~WP~cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~ 130 (771)
+.+++.+|..+++.-.+. .-|-+-++..+.+ -|+.++..+++||....+.|+++|||+|++..++..
T Consensus 65 ~~~~~~i~~V~~~se~~v--~~aa~lae~lglp-g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~~v~~~---------- 131 (887)
T PRK02186 65 VSSLDGVAGIMSSSEYFI--EVASEVARRLGLP-AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALR---------- 131 (887)
T ss_pred HHhcCCCCEEEeCchhhH--HHHHHHHHHhCcC-CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEeCCH----------
Confidence 345666777777643333 3344444555544 378899999999999999999999999999988642
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc--cCcceEEeeccCCCC
Q 004147 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR--REGSYIYEEFMPTGG 208 (771)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r--~~gsyIyEEFi~t~G 208 (771)
++..... ..+++|+|+||++|. .|-|+. .+.|... +..-..... ..+.||.||||+-.-
T Consensus 132 --~e~~~~~-~~~~~PvVVKP~~g~-----------gS~GV~----~v~~~~e-l~~a~~~~~~~~~~~~lvEEfI~G~E 192 (887)
T PRK02186 132 --AVALDAL-DGLTYPVVVKPRMGS-----------GSVGVR----LCASVAE-AAAHCAALRRAGTRAALVQAYVEGDE 192 (887)
T ss_pred --HHHHHHH-HhCCCCEEEEeCCCC-----------CCCCeE----EECCHHH-HHHHHHHHHhcCCCcEEEeecccCCc
Confidence 1221111 235689999999986 222321 1211111 000000111 367899999998544
Q ss_pred ceeEEEEECCc-eeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhcC--ceeeEeEEeeCCCc
Q 004147 209 TDVKVYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQ--AVCGFDLLRCEGRS 281 (771)
Q Consensus 209 ~DIKVytVG~~-~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~~afgq--~VcGfDLLRs~g~s 281 (771)
-.|-+++.++. .+.+..++.......|.-+ +.-+|..++++ -.+++.++++++|. .++++|+..+.+++
T Consensus 193 ~sVe~i~~~g~~~i~~i~~k~~~~~~~~ve~----g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g~ 268 (887)
T PRK02186 193 YSVETLTVARGHQVLGITRKHLGPPPHFVEI----GHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDTV 268 (887)
T ss_pred EEEEEEEECCcEEEEEEEeeecCCCCCeEEe----ccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCCE
Confidence 56666766443 4555566542111112111 12356777754 45788999999998 56899999999999
Q ss_pred EEEecCC
Q 004147 282 YVCDVNG 288 (771)
Q Consensus 282 yVcDVNG 288 (771)
||+|||.
T Consensus 269 ~liEIn~ 275 (887)
T PRK02186 269 VIIEINP 275 (887)
T ss_pred EEEEECC
Confidence 9999994
No 41
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.93 E-value=1e-08 Score=125.71 Aligned_cols=195 Identities=19% Similarity=0.292 Sum_probs=125.5
Q ss_pred cceeeccccCCCChHHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
+|..|+.++.-.|+ .....++..+ |+.-|+..+..++.||....++|+++|||+|++..+... ++.
T Consensus 630 ~dgVi~~~g~~~~~-~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~------------ee~ 696 (1066)
T PRK05294 630 PKGVIVQFGGQTPL-KLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSV------------EEA 696 (1066)
T ss_pred CCEEEEEeCchhHH-HHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCH------------HHH
Confidence 46677666544444 3344555667 445688999999999999999999999999999998542 122
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc---ccccCcceEEeeccCCC-Ccee
Q 004147 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTG-GTDV 211 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~---~~r~~gsyIyEEFi~t~-G~DI 211 (771)
.... ..+++|+|+||..|. .|.|+. + +.|.. ++..-+. ....++.+|.||||+-. .-+|
T Consensus 697 ~~~~-~~igyPvvVKP~~~~-----------Gg~Gv~-i---v~~~e-eL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV 759 (1066)
T PRK05294 697 LEVA-EEIGYPVLVRPSYVL-----------GGRAME-I---VYDEE-ELERYMREAVKVSPDHPVLIDKFLEGAIEVDV 759 (1066)
T ss_pred HHHH-HhcCCCeEEEeCCCC-----------CCCcEE-E---ECCHH-HHHHHHHHHHhhCCCCcEEEEecCCCCEEEEE
Confidence 2211 235689999998875 222332 1 11111 1110000 11245679999999764 6688
Q ss_pred EEEEECCce-eEE-EeeeCCCCCCeeeecCCCCceee---eeeCCHH----HHHHHHHHHHHhcC-ceeeEeEEeeCCCc
Q 004147 212 KVYTVGPEY-AHA-EARKSPVVDGVVMRNPDGKEVRY---PVLLTPN----EKQMAREVCIAFRQ-AVCGFDLLRCEGRS 281 (771)
Q Consensus 212 KVytVG~~~-vhA-e~RKSP~~DG~vrrN~~gke~r~---pv~Lt~e----Ek~iA~ka~~afgq-~VcGfDLLRs~g~s 281 (771)
-++.-|..+ +.+ +.+..+ ...|.|+... +..|+++ -+++|.++++++|. .+++||++.+++++
T Consensus 760 ~~v~dg~~v~i~~i~e~i~~-------~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~~~~ 832 (1066)
T PRK05294 760 DAICDGEDVLIGGIMEHIEE-------AGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKDDEV 832 (1066)
T ss_pred EEEecCCeEEEeeeEEeeee-------ccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEECCeE
Confidence 887766532 222 232221 2345454433 3467754 46688899999997 46669999999999
Q ss_pred EEEecCC
Q 004147 282 YVCDVNG 288 (771)
Q Consensus 282 yVcDVNG 288 (771)
||+|||.
T Consensus 833 yViEiNp 839 (1066)
T PRK05294 833 YVIEVNP 839 (1066)
T ss_pred EEEEEec
Confidence 9999995
No 42
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.91 E-value=3.3e-09 Score=120.58 Aligned_cols=204 Identities=16% Similarity=0.214 Sum_probs=121.8
Q ss_pred cceeeccccCCCChH--HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCccccccccc
Q 004147 57 CDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIEE 132 (771)
Q Consensus 57 cd~lIsf~s~GfpL~--kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e~ 132 (771)
+|++++.| ||..+ ...+.++..+ +|+-++.++..+++||..+.++|+++|||+|+.... ..+ .
T Consensus 75 ~daI~pg~--gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~-----------~ 141 (499)
T PRK08654 75 ADAIHPGY--GFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIED-----------I 141 (499)
T ss_pred CCEEEECC--CccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCC-----------H
Confidence 46677654 34322 3345555666 466789999999999999999999999999877653 111 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 004147 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (771)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIK 212 (771)
++.... -..+++|+|+||.+|.. +..|+.-.+.- -....|+... ++ . ...+ .++.++.|+||.. ++.|-
T Consensus 142 ~e~~~~-a~~igyPvvIKp~~GgG-G~Gv~iv~~~~-eL~~a~~~~~---~~-a--~~~f-~~~~v~vE~~I~~-~r~ie 210 (499)
T PRK08654 142 EEAKEI-AEEIGYPVIIKASAGGG-GIGMRVVYSEE-ELEDAIESTQ---SI-A--QSAF-GDSTVFIEKYLEK-PRHIE 210 (499)
T ss_pred HHHHHH-HHHhCCCEEEEeCCCCC-CCeEEEeCCHH-HHHHHHHHHH---HH-H--HHhC-CCCeEEEEeCCCC-CcEEE
Confidence 222221 12456899999999861 11111111110 0111222110 00 0 0011 2567899999964 67788
Q ss_pred EEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCHH----HHHHHHHHHHHhcCceee-EeEEeeCCCcEE
Q 004147 213 VYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPN----EKQMAREVCIAFRQAVCG-FDLLRCEGRSYV 283 (771)
Q Consensus 213 VytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv-~Lt~e----Ek~iA~ka~~afgq~VcG-fDLLRs~g~syV 283 (771)
|-++|+ +++|.-.|...+ -|++..--|. .|. .|+++ -.++|.++++++|..=+| ||++..+|++||
T Consensus 211 Vqvl~d~~G~vv~l~~recsi----qrr~qk~ie~-~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~g~~yf 285 (499)
T PRK08654 211 IQILADKHGNVIHLGDRECSI----QRRHQKLIEE-APSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNFYF 285 (499)
T ss_pred EEEEEcCCCCEEEEeeecccc----ccCccceEEE-CCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCcEEE
Confidence 877764 466666664321 1222111111 121 36654 367899999999988666 999998889999
Q ss_pred EecCCc
Q 004147 284 CDVNGW 289 (771)
Q Consensus 284 cDVNGw 289 (771)
+|||.-
T Consensus 286 lEiNpR 291 (499)
T PRK08654 286 LEMNTR 291 (499)
T ss_pred EEEECC
Confidence 999953
No 43
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.91 E-value=2.5e-09 Score=103.98 Aligned_cols=149 Identities=25% Similarity=0.333 Sum_probs=72.6
Q ss_pred hhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHH
Q 004147 94 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKE 173 (771)
Q Consensus 94 l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~r 173 (771)
+.||+++++.|+++|||+|.++..... . . ..+|+|+||.+|. -|.|. +
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~~~~~~--~-------------~-----~~~~~viKp~~G~-----------Gg~~i-~ 48 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTLRDSEP--E-------------P-----IDGPWVIKPRDGA-----------GGEGI-R 48 (161)
T ss_dssp -TSHHHHHHHHTTT-S--------EES--S--------------------SSSEEEEESS-------------------B
T ss_pred CCCHHHHHHHHHccCCCCCCccccccc--c-------------c-----cCCcEEEEeCCCC-----------CCCCe-E
Confidence 469999999999999999955544321 0 0 1369999999997 22233 2
Q ss_pred HhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCc---eeEEEeeeCCCC-CCeeeecCCCCceeeeee
Q 004147 174 LFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPE---YAHAEARKSPVV-DGVVMRNPDGKEVRYPVL 249 (771)
Q Consensus 174 Lfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~---~vhAe~RKSP~~-DG~vrrN~~gke~r~pv~ 249 (771)
.++. . ++... . .....|+||||+ |+-.-+.++... .+-+..|+-=.. ++.++. .|+-......
T Consensus 49 ~~~~---~-~~~~~----~-~~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~--~G~~~~~~~~ 115 (161)
T PF02655_consen 49 IVDS---E-DELEE----F-LNKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGNDDGRFRY--CGGIVPADTP 115 (161)
T ss_dssp --SS------TTE------------EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET----TEE--EEEEES----
T ss_pred EECC---c-hhhcc----c-cccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccccceeee--cccccccCCc
Confidence 3331 1 11111 1 111129999997 555555544432 344444543100 111211 1222222333
Q ss_pred CCHHHHHHHHHHHHHh-cC-ceeeEeEEeeCCCcEEEecC
Q 004147 250 LTPNEKQMAREVCIAF-RQ-AVCGFDLLRCEGRSYVCDVN 287 (771)
Q Consensus 250 Lt~eEk~iA~ka~~af-gq-~VcGfDLLRs~g~syVcDVN 287 (771)
..++-.++|.+++++| |+ ..+|||++.+.+++||+|||
T Consensus 116 ~~~~~~~~~~~i~~~l~gl~G~~giD~I~~~~~~~viEIN 155 (161)
T PF02655_consen 116 LKEEIIELARRIAEALPGLRGYVGIDFILDDGGPYVIEIN 155 (161)
T ss_dssp HHHHHHHHHHHHHTTSTT--EEEEEEEEESS-SEEEEEEE
T ss_pred hHHHHHHHHHHHHHHcCCCeeeEeEEEEEeCCcEEEEEEc
Confidence 4667788999999999 65 59999999999999999999
No 44
>PRK08462 biotin carboxylase; Validated
Probab=98.90 E-value=2.9e-09 Score=118.20 Aligned_cols=197 Identities=19% Similarity=0.279 Sum_probs=116.6
Q ss_pred cceeeccccCCCCh--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCccccccccc
Q 004147 57 CDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIEE 132 (771)
Q Consensus 57 cd~lIsf~s~GfpL--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e~ 132 (771)
+|++++-+ ||.- ....+.++..|. ++-++.++..+++||..+.+.|+++|||+|++... ..+ .
T Consensus 77 ~D~i~pg~--g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~-----------~ 143 (445)
T PRK08462 77 ADAIFPGY--GFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKS-----------Y 143 (445)
T ss_pred CCEEEECC--CccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCC-----------H
Confidence 67777665 3311 223356667774 67799999999999999999999999999986532 111 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccc---ccc---cccccccCcceEEeeccCC
Q 004147 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSE---FHP---DVRRVRREGSYIYEEFMPT 206 (771)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~---~~~---~~~~~r~~gsyIyEEFi~t 206 (771)
++.... -..+++|+|+||++|. .|-|+. + +.|.+.. |.. +......++.+|.||||..
T Consensus 144 ~~~~~~-~~~~g~PvvvKP~~g~-----------gs~Gv~-~---v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g 207 (445)
T PRK08462 144 EEAKKI-AKEIGYPVILKAAAGG-----------GGRGMR-V---VEDESDLENLYLAAESEALSAFGDGTMYMEKFINN 207 (445)
T ss_pred HHHHHH-HHHcCCCEEEEeCCCC-----------CCCCeE-E---ECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCC
Confidence 111111 1235689999999986 233332 1 1111111 000 0000113567999999964
Q ss_pred CCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCH----HHHHHHHHHHHHhcCce-eeEeEEee
Q 004147 207 GGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTP----NEKQMAREVCIAFRQAV-CGFDLLRC 277 (771)
Q Consensus 207 ~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv-~Lt~----eEk~iA~ka~~afgq~V-cGfDLLRs 277 (771)
++.+.|.++|. ++++.-.|.... .+++..--+. .|. .|++ +-+++|.++++++|..- +-||++.+
T Consensus 208 -~~e~~v~v~~~~~g~~~~~g~~~~~~----~~~~~~~~~~-~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~ 281 (445)
T PRK08462 208 -PRHIEVQILGDKHGNVIHVGERDCSL----QRRHQKLIEE-SPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLD 281 (445)
T ss_pred -CeEEEEEEEECCCCCEEEEEeccccc----eecccceEEE-cCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEe
Confidence 56677777753 344443222210 1111100001 122 4554 56778999999999853 33999987
Q ss_pred -CCCcEEEecCC
Q 004147 278 -EGRSYVCDVNG 288 (771)
Q Consensus 278 -~g~syVcDVNG 288 (771)
+|++||+|||.
T Consensus 282 ~~g~~~viEiNp 293 (445)
T PRK08462 282 SNLDFYFMEMNT 293 (445)
T ss_pred CCCCEEEEEEEC
Confidence 46899999994
No 45
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.90 E-value=1.1e-08 Score=115.07 Aligned_cols=202 Identities=18% Similarity=0.248 Sum_probs=119.9
Q ss_pred cceeeccccCCCCh--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCccccccccc
Q 004147 57 CDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIEE 132 (771)
Q Consensus 57 cd~lIsf~s~GfpL--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e~ 132 (771)
||++++-| ||-- ..+.+.++..+ ||+-++.+...+++||..+.++|+++|||+|++... ..+ .
T Consensus 74 ~D~I~pg~--g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~-----------~ 140 (472)
T PRK07178 74 CDALHPGY--GFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLAD-----------L 140 (472)
T ss_pred CCEEEeCC--CCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCC-----------H
Confidence 67777644 3311 12345555666 567789999999999999999999999999887542 111 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccc---cccccccCcceEEeeccCCCCc
Q 004147 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHP---DVRRVRREGSYIYEEFMPTGGT 209 (771)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~---~~~~~r~~gsyIyEEFi~t~G~ 209 (771)
++.... -..+++|+|+||++|. -|-|+. +.+....-...|+. +......+..++.|+||.. ++
T Consensus 141 ~e~~~~-~~~igyPvvvKp~~gg-----------Gg~Gv~-~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~-~~ 206 (472)
T PRK07178 141 DEALAE-AERIGYPVMLKATSGG-----------GGRGIR-RCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVN-PK 206 (472)
T ss_pred HHHHHH-HHHcCCcEEEEeCCCC-----------CCCCce-EeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC-Ce
Confidence 222221 1245799999999986 233332 22111000000000 0000012345889999954 66
Q ss_pred eeEEEEEC---CceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhcCce-eeEeEEee-CCC
Q 004147 210 DVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAV-CGFDLLRC-EGR 280 (771)
Q Consensus 210 DIKVytVG---~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk----~iA~ka~~afgq~V-cGfDLLRs-~g~ 280 (771)
.+-|-++| ++.+|...|... .-+++..-.|..-...|+++.+ ++|.++++++|..- +.||++.+ +|+
T Consensus 207 eiev~v~~d~~G~~v~~~er~~s----~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~g~ 282 (472)
T PRK07178 207 HIEVQILADSHGNVVHLFERDCS----IQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDADGE 282 (472)
T ss_pred EEEEEEEEECCCCEEEEEccccc----eEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCCCC
Confidence 67665554 356666555331 1223332223221226777654 59999999999754 45999995 678
Q ss_pred cEEEecCCc
Q 004147 281 SYVCDVNGW 289 (771)
Q Consensus 281 syVcDVNGw 289 (771)
+||+|||.-
T Consensus 283 ~y~iEiNpR 291 (472)
T PRK07178 283 VYFMEMNTR 291 (472)
T ss_pred EEEEEEeCC
Confidence 999999954
No 46
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.89 E-value=1.9e-08 Score=123.23 Aligned_cols=198 Identities=18% Similarity=0.272 Sum_probs=124.3
Q ss_pred cceeeccccCCCChHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
+|.+|+.++.-.++ .+...++..+. +.-|+.++...+.||.+..++|+++|||+|++..+... ++.
T Consensus 630 idgVI~~~gg~~~~-~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~------------ee~ 696 (1050)
T TIGR01369 630 PEGVIVQFGGQTPL-NLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSV------------EEA 696 (1050)
T ss_pred CCEEEEccCcHhHH-HHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCH------------HHH
Confidence 56666655433332 22223334554 45589999999999999999999999999999988642 122
Q ss_pred eeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCC-CCceeEE
Q 004147 136 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKV 213 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t-~G~DIKV 213 (771)
...- ..+++|+|+||..+. ..++.+.+.... ....++.+ .....++.+|.||||+. .--+|-+
T Consensus 697 ~~~~-~~igyPvIVKP~~~~Gg~gv~iv~~~ee---L~~~l~~a-----------~~~s~~~~vlVeefI~~G~E~~Vd~ 761 (1050)
T TIGR01369 697 VEFA-SEIGYPVLVRPSYVLGGRAMEIVYNEEE---LRRYLEEA-----------VEVSPEHPVLIDKYLEDAVEVDVDA 761 (1050)
T ss_pred HHHH-HhcCCCEEEEECCCCCCCCeEEECCHHH---HHHHHHHH-----------HHhCCCCCEEEeecCCCCeEEEEEE
Confidence 2211 235689999999874 122332222110 11111111 01124567999999974 4467778
Q ss_pred EEECCceeEEE-eeeCCCCCCeeeecCCCCcee--eee-eCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEEE
Q 004147 214 YTVGPEYAHAE-ARKSPVVDGVVMRNPDGKEVR--YPV-LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVC 284 (771)
Q Consensus 214 ytVG~~~vhAe-~RKSP~~DG~vrrN~~gke~r--~pv-~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~g~syVc 284 (771)
+..|++++.+. ... ..+.+.|.|... +|. .|++ +-+++|.++++++|. .++.||++...+++||+
T Consensus 762 l~d~g~v~i~~i~e~------~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~~~~yvI 835 (1050)
T TIGR01369 762 VSDGEEVLIPGIMEH------IEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKDGEVYVI 835 (1050)
T ss_pred EEeCCEEEEEEEEEe------ecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEECCeEEEE
Confidence 88887655432 111 112345555543 333 5676 456788999999984 45559999999999999
Q ss_pred ecCC
Q 004147 285 DVNG 288 (771)
Q Consensus 285 DVNG 288 (771)
|||.
T Consensus 836 EvNp 839 (1050)
T TIGR01369 836 EVNP 839 (1050)
T ss_pred EEeC
Confidence 9994
No 47
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.87 E-value=1.1e-08 Score=112.63 Aligned_cols=191 Identities=16% Similarity=0.217 Sum_probs=109.7
Q ss_pred HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCc-EEE
Q 004147 72 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKP-FVE 149 (771)
Q Consensus 72 kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kP-fVe 149 (771)
.+.+.++..+ |++-++..+..+++||....+.|+++|||+|++..+... ++....- ..+++| +|+
T Consensus 79 ~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~------------~~~~~~~-~~~g~P~~Vv 145 (423)
T TIGR00877 79 GLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDP------------EEALSYI-QEKGAPAIVV 145 (423)
T ss_pred HHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECCH------------HHHHHHH-HhcCCCeEEE
Confidence 4556777777 556688999999999999999999999999999888642 1222211 235689 999
Q ss_pred eecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE--CCceeE-EEe
Q 004147 150 KPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV--GPEYAH-AEA 225 (771)
Q Consensus 150 Kpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytV--G~~~vh-Ae~ 225 (771)
||..|. -.++.+...... ....++.+-+.+ +- ..+..+|+||||. |..+-|.++ |..+.. ..+
T Consensus 146 Kp~~~~gg~Gv~~v~~~~e---l~~~~~~~~~~~--~g------~~~~~~lvEe~i~--G~E~sv~~~~dg~~~~~~~~~ 212 (423)
T TIGR00877 146 KADGLAAGKGVIVAKTNEE---AIKAVEEILEQK--FG------DAGERVVIEEFLD--GEEVSLLAFVDGKTVIPMPPA 212 (423)
T ss_pred EECCCCCCCCEEEECCHHH---HHHHHHHHHHHh--cC------CCCCeEEEEECcc--CceEEEEEEEcCCeEEeceee
Confidence 999875 122222211110 111122111000 00 1245799999997 556555444 443332 122
Q ss_pred eeC-CCCCCeeeecCCCCceeeee-eCCHH-----HHHHHHHHHHHhc------CceeeEeEEeeCCCcEEEecCC
Q 004147 226 RKS-PVVDGVVMRNPDGKEVRYPV-LLTPN-----EKQMAREVCIAFR------QAVCGFDLLRCEGRSYVCDVNG 288 (771)
Q Consensus 226 RKS-P~~DG~vrrN~~gke~r~pv-~Lt~e-----Ek~iA~ka~~afg------q~VcGfDLLRs~g~syVcDVNG 288 (771)
|.- ...+|..--++.|-+.-.|. .++++ .++++.++..+++ ..++.+|++.+.+++||||||.
T Consensus 213 ~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~g~~viEin~ 288 (423)
T TIGR00877 213 QDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKEGPKVLEFNC 288 (423)
T ss_pred eeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECCCcEEEEEEc
Confidence 211 11222221122111222232 35543 2456666777774 3678899999988899999993
No 48
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.87 E-value=9.3e-09 Score=109.34 Aligned_cols=187 Identities=24% Similarity=0.286 Sum_probs=121.1
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEecc
Q 004147 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (771)
Q Consensus 86 Ndl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~ 165 (771)
|+-..-.++.||....+++.+.|||+|+.++.... .-.........++..+.-...-..+||+||..|+
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~---------- 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGR-DYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGS---------- 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccc-eEEecccccCHHHHHHHHHhccCCcEEEEeCCCC----------
Confidence 88888889999999999999999999996553221 0000000011122222111111269999999997
Q ss_pred CCCChHHHHhhhcCCCccccccccc---c-cccCc--ceEEeeccCC---------CC-ceeEEEEE----CCceeEEEe
Q 004147 166 SAGGGMKELFRKVGNRSSEFHPDVR---R-VRREG--SYIYEEFMPT---------GG-TDVKVYTV----GPEYAHAEA 225 (771)
Q Consensus 166 ~~GgG~~rLfrkign~sS~~~~~~~---~-~r~~g--syIyEEFi~t---------~G-~DIKVytV----G~~~vhAe~ 225 (771)
.|.|+-.+-+ .+. ..+..+.. . ....+ .||+||||.- .+ -+|||.|+ ++.++.|+.
T Consensus 85 -~G~Gi~~i~~-~~~--~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~l 160 (285)
T PF14397_consen 85 -GGKGILVIDR-RDG--SEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAML 160 (285)
T ss_pred -CccCEEEEEe-ecC--cccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEE
Confidence 5555532211 110 11111111 1 11222 8999999863 12 68999999 346789999
Q ss_pred eeCCCCCCeeeecCCCCceeeeeeCC----------------------------------HHHHHHHHHHHHHh-cCcee
Q 004147 226 RKSPVVDGVVMRNPDGKEVRYPVLLT----------------------------------PNEKQMAREVCIAF-RQAVC 270 (771)
Q Consensus 226 RKSP~~DG~vrrN~~gke~r~pv~Lt----------------------------------~eEk~iA~ka~~af-gq~Vc 270 (771)
|-+. .|...-|.|.|++.-+|.+. ++-.++|.++++.| ++.+.
T Consensus 161 Rlg~--~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~i 238 (285)
T PF14397_consen 161 RLGR--GGSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYI 238 (285)
T ss_pred EeCC--CCCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeE
Confidence 9984 77777788877655444321 35578889999887 57899
Q ss_pred eEeEEeeCCCcEEEecCCc
Q 004147 271 GFDLLRCEGRSYVCDVNGW 289 (771)
Q Consensus 271 GfDLLRs~g~syVcDVNGw 289 (771)
|.|+.-+.++|+++|.|..
T Consensus 239 GWDvait~~Gp~llE~N~~ 257 (285)
T PF14397_consen 239 GWDVAITEDGPVLLEGNAR 257 (285)
T ss_pred EEEEEEcCCCcEEEEeeCC
Confidence 9999999888999999965
No 49
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.87 E-value=1.2e-08 Score=112.94 Aligned_cols=188 Identities=13% Similarity=0.155 Sum_probs=108.9
Q ss_pred HHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCccccccccccceeeecCeeccCcEEEee
Q 004147 74 ESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (771)
Q Consensus 74 i~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKp 151 (771)
.+.++..+ |+.-++.++..+++||....+.|+++|||+|++... ..+ + ++..... ..+++|+|+||
T Consensus 92 ~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~-~----------~e~~~~~-~~~~~P~VvKP 159 (450)
T PRK06111 92 AERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLED-A----------EEAIAIA-RQIGYPVMLKA 159 (450)
T ss_pred HHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCC-H----------HHHHHHH-HHhCCCEEEEe
Confidence 44555666 445688999999999999999999999999987322 121 1 1221111 23568999999
Q ss_pred cccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEEC---CceeEEEeee
Q 004147 152 VHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARK 227 (771)
Q Consensus 152 v~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG---~~~vhAe~RK 227 (771)
.+|. -+++++...... ....++....... ....++.+|.||||.- ++.+-+-+++ ++.++.-.|.
T Consensus 160 ~~g~gs~Gv~iv~~~~e---l~~a~~~~~~~~~-------~~~~~~~~lvEe~i~g-~~e~~v~v~~~~~g~~~~~~~~~ 228 (450)
T PRK06111 160 SAGGGGIGMQLVETEQE---LTKAFESNKKRAA-------NFFGNGEMYIEKYIED-PRHIEIQLLADTHGNTVYLWERE 228 (450)
T ss_pred CCCCCCceEEEECCHHH---HHHHHHHHHHHHH-------HhcCCCcEEEEcccCC-CcEEEEEEEEcCCCCEEEEEeec
Confidence 9985 234443332221 2223332110000 0113457999999973 3455554443 3344443333
Q ss_pred CCCCCCeeeecCCCCceeeee-eCC----HHHHHHHHHHHHHhcC-ceeeEeEEeeCCC-cEEEecCCc
Q 004147 228 SPVVDGVVMRNPDGKEVRYPV-LLT----PNEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVCDVNGW 289 (771)
Q Consensus 228 SP~~DG~vrrN~~gke~r~pv-~Lt----~eEk~iA~ka~~afgq-~VcGfDLLRs~g~-syVcDVNGw 289 (771)
.+. .+.+..--+. .|. .++ .+-+++|.++++++|. .++.||++.+.++ +||+|||.-
T Consensus 229 ~~~----~~~~~~~~~~-~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~g~~~viEiN~R 292 (450)
T PRK06111 229 CSV----QRRHQKVIEE-APSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMNTR 292 (450)
T ss_pred ccc----cccccceEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCCCCEEEEEEECC
Confidence 221 0101000000 011 133 4566889999999998 5777999988666 999999954
No 50
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.84 E-value=6.4e-09 Score=115.37 Aligned_cols=203 Identities=15% Similarity=0.185 Sum_probs=114.8
Q ss_pred cceeeccccCCCCh--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 004147 57 CDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (771)
Q Consensus 57 cd~lIsf~s~GfpL--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e 131 (771)
||++++.+ ||-. ....+.++..+. ++.++.++..+++||....+.|+++|||+|++. .+..
T Consensus 75 id~I~p~~--~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~------------ 140 (451)
T PRK08591 75 ADAIHPGY--GFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDD------------ 140 (451)
T ss_pred CCEEEECC--CccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCC------------
Confidence 78888765 2211 123455666674 677999999999999999999999999999864 3321
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCcee
Q 004147 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (771)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DI 211 (771)
.++.... -..+++|+|+||++|.. ...|+.-.+.. -....++.....+ . ....+..+++||||+. ++.+
T Consensus 141 ~~~~~~~-~~~~g~PvvvKP~~g~g-s~Gv~iv~~~~-el~~~~~~~~~~~---~----~~~~~~~vlvEe~i~g-~~e~ 209 (451)
T PRK08591 141 EEEALAI-AKEIGYPVIIKATAGGG-GRGMRVVRTEA-ELEKAFSMARAEA---K----AAFGNPGVYMEKYLEN-PRHI 209 (451)
T ss_pred HHHHHHH-HHHcCCCEEEEECCCCC-CceEEEECCHH-HHHHHHHHHHHHH---H----HhcCCCCEEEEeCCCC-CcEE
Confidence 1122221 12356899999999861 12222222110 0111222110000 0 0012456899999964 4556
Q ss_pred EEEEEC---CceeEEEeeeCCCCCCeeeecCCCCceeeeeeCC----HHHHHHHHHHHHHhcCc-eeeEeEEee-CCCcE
Q 004147 212 KVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLT----PNEKQMAREVCIAFRQA-VCGFDLLRC-EGRSY 282 (771)
Q Consensus 212 KVytVG---~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt----~eEk~iA~ka~~afgq~-VcGfDLLRs-~g~sy 282 (771)
-|-+++ +++++.-.|.... .+++..-.+..-+..|+ .+-.++|.++++++|.. ++.||++.+ +|++|
T Consensus 210 ~v~v~~d~~g~~~~~~~~~~~~----~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~~g~~~ 285 (451)
T PRK08591 210 EIQVLADGHGNAIHLGERDCSL----QRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEKNGEFY 285 (451)
T ss_pred EEEEEEcCCCCEEEEecccccc----eecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcCCCCEE
Confidence 654444 3455443222110 01110000000011345 45567899999999975 344999988 77799
Q ss_pred EEecCC
Q 004147 283 VCDVNG 288 (771)
Q Consensus 283 VcDVNG 288 (771)
|+|||.
T Consensus 286 viEINp 291 (451)
T PRK08591 286 FIEMNT 291 (451)
T ss_pred EEEEEC
Confidence 999995
No 51
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.80 E-value=2.6e-08 Score=111.48 Aligned_cols=204 Identities=13% Similarity=0.102 Sum_probs=120.5
Q ss_pred cceeeccccCCCChHHH-HHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCCEE-EEeccCCCcccccccccc
Q 004147 57 CDCLIAFYSSGYPLEKA-ESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYA-LVNREVPYQELDYFIEEE 133 (771)
Q Consensus 57 cd~lIsf~s~GfpL~ka-i~y~~lr~p~~-iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~-~~~r~~p~~~~~~~~e~~ 133 (771)
+|..|+.. + -||..+ ...++..+..+ ..+.+...+.+||..+.+.|+++|||+|++. .+..+ +
T Consensus 66 id~Vi~~~-d-~~l~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~~~~~~~------------~ 131 (435)
T PRK06395 66 VDIVFVGP-D-PVLATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSE------------K 131 (435)
T ss_pred CCEEEECC-C-hHHHHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCcccceeCCh------------H
Confidence 56777652 3 355333 44445556554 4889999999999999999999999998654 44321 1
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccccc-ccCcceEEeeccCCCCceeE
Q 004147 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-RREGSYIYEEFMPTGGTDVK 212 (771)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~-r~~gsyIyEEFi~t~G~DIK 212 (771)
+..... ..++.|+|+||..+. .|-|+........+....++. ...+ ..++.+|+||||.-.=-.|=
T Consensus 132 e~~~~~-~~~~~PvVVKP~~~s-----------ggkGV~v~~~~~~~~~ea~~~-~~~~~~~~~~viIEEfl~G~E~Svd 198 (435)
T PRK06395 132 DAARDY-ITSMKDVAVKPIGLT-----------GGKGVKVTGEQLNSVDEAIRY-AIEILDRDGVVLIEKKMTGEEFSLQ 198 (435)
T ss_pred HHHHHH-HhhCCCEEEEeCCCC-----------CCCCeEEecCchhhHHHHHHH-HHHHhCCCCcEEEEeecCCceEEEE
Confidence 111111 123589999999987 555664222111111111110 0011 34567999999963334555
Q ss_pred EEEECCceeEE-Eeee-CCCCCCeeeecCCCCceee-----eeeCCHHHH----HHHHHHHHHhcC------ceeeEeEE
Q 004147 213 VYTVGPEYAHA-EARK-SPVVDGVVMRNPDGKEVRY-----PVLLTPNEK----QMAREVCIAFRQ------AVCGFDLL 275 (771)
Q Consensus 213 VytVG~~~vhA-e~RK-SP~~DG~vrrN~~gke~r~-----pv~Lt~eEk----~iA~ka~~afgq------~VcGfDLL 275 (771)
+|+-|..+..- ..+. -.+.||+.--|+.|=+.-. +-.|++++. +++.+++++++. .+..++++
T Consensus 199 ~~~dg~~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~ 278 (435)
T PRK06395 199 AFSDGKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFM 278 (435)
T ss_pred EEEcCCeEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEE
Confidence 67766664222 1110 0113666544544333111 112776554 677788899994 45578999
Q ss_pred eeCCCcEEEecC
Q 004147 276 RCEGRSYVCDVN 287 (771)
Q Consensus 276 Rs~g~syVcDVN 287 (771)
-+.++|||+|+|
T Consensus 279 lt~~gp~ViE~n 290 (435)
T PRK06395 279 DTPNGVKVIEIN 290 (435)
T ss_pred EeCCCcEEEEEe
Confidence 999999999999
No 52
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.80 E-value=6.7e-08 Score=111.87 Aligned_cols=199 Identities=15% Similarity=0.169 Sum_probs=123.2
Q ss_pred cceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (771)
||+ |+|-....+.+ ++++++..++.+.++.++..+++||...-+.|+++|||+|++..+... ++..
T Consensus 84 ~dv-It~e~e~v~~~-~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~------------~el~ 149 (577)
T PLN02948 84 CDV-LTVEIEHVDVD-TLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDL------------ESAE 149 (577)
T ss_pred CCE-EEEecCCCCHH-HHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCH------------HHHH
Confidence 554 35555666654 458888888777899999999999999999999999999999988542 1211
Q ss_pred eecCeeccCcEEEeecccc--CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 004147 137 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (771)
Q Consensus 137 ~v~g~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVy 214 (771)
. ....+++|+|+||.+|. -.++++-..... ....++.. ...+..+|.|+||+ ..+.+-|.
T Consensus 150 ~-~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~e---L~~a~~~~-------------~~~~~~vlvEefI~-~~~EisV~ 211 (577)
T PLN02948 150 K-AGDLFGYPLMLKSRRLAYDGRGNAVAKTEED---LSSAVAAL-------------GGFERGLYAEKWAP-FVKELAVM 211 (577)
T ss_pred H-HHHhcCCcEEEEeCCCCCCCCCeEEECCHHH---HHHHHHHh-------------hCCCCcEEEEecCC-CCeEEEEE
Confidence 1 11246789999999753 234433322211 11222211 11234689999994 24677777
Q ss_pred EECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeCCC-cEEEecCC
Q 004147 215 TVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGR-SYVCDVNG 288 (771)
Q Consensus 215 tVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~g~-syVcDVNG 288 (771)
+++..- -+...-|+++. ..+|........|..|++ +-+++|.++++++|.. ++.+|++.+.++ .||+|||.
T Consensus 212 v~r~~~--G~i~~~p~~E~-~~~~~~~~~~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~dG~v~v~EInp 288 (577)
T PLN02948 212 VARSRD--GSTRCYPVVET-IHKDNICHVVEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKDGQILLNEVAP 288 (577)
T ss_pred EEECCC--CCEEEecCccc-EEECCeeEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCCCcEEEEEEeC
Confidence 774210 01111343221 222211112235667776 4567789999999743 557898888554 79999995
Q ss_pred cc
Q 004147 289 WS 290 (771)
Q Consensus 289 wS 290 (771)
-.
T Consensus 289 Rp 290 (577)
T PLN02948 289 RP 290 (577)
T ss_pred CC
Confidence 43
No 53
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.74 E-value=1.8e-07 Score=111.78 Aligned_cols=193 Identities=17% Similarity=0.217 Sum_probs=122.2
Q ss_pred HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 004147 72 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (771)
Q Consensus 72 kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (771)
....++++.+ ||+=.+..+..++.||..+-++|+++|||+|++..+.+..-. .+.+..+.-.-..+++|+|+|
T Consensus 543 ~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~------~~~~~~~~~~~~~lg~P~iVK 616 (809)
T PRK14573 543 TMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQPLTLAGWK------REPELCLAHIVEAFSFPMFVK 616 (809)
T ss_pred HHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhcc------cChHHHHHHHHHhcCCCEEEe
Confidence 5677888888 677789999999999999999999999999999888642000 000111110112467899999
Q ss_pred eccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCce---eEE--E
Q 004147 151 PVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEY---AHA--E 224 (771)
Q Consensus 151 pv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~---vhA--e 224 (771)
|.++- .+.|+. ++.|.+ ++..-+. .+..+..+|+|||+.. |+.+-|-++|+.- +.+ .
T Consensus 617 P~~~G-----------sS~Gv~----~v~~~~-el~~a~~~a~~~~~~vlVEe~i~~-grEi~v~vl~~~~~~~~~~~~~ 679 (809)
T PRK14573 617 TAHLG-----------SSIGVF----EVHNVE-ELRDKISEAFLYDTDVFVEESRLG-SREIEVSCLGDGSSAYVIAGPH 679 (809)
T ss_pred eCCCC-----------CCCCEE----EECCHH-HHHHHHHHHHhcCCcEEEEeccCC-CEEEEEEEEeCCCCceEeccce
Confidence 99974 223332 122221 1111111 1224566899999863 8999999998752 111 2
Q ss_pred eeeCCCCCCe--eeecC--CCC---ceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEee-CCCcEEEecCCc
Q 004147 225 ARKSPVVDGV--VMRNP--DGK---EVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVNGW 289 (771)
Q Consensus 225 ~RKSP~~DG~--vrrN~--~gk---e~r~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs-~g~syVcDVNGw 289 (771)
.+... .+- +..+- +|+ .+.+|..|++ +-+++|.++++++|. .+|.||++-+ +|.+||+|||--
T Consensus 680 e~~~~--~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~g~~yv~EiNt~ 755 (809)
T PRK14573 680 ERRGS--GGFIDYQEKYGLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFFLDEEGNFWLSEMNPI 755 (809)
T ss_pred EEccC--CCeeCchhcccCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCC
Confidence 22221 121 22222 233 2335667775 556788999999995 4778999987 567999999943
No 54
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.74 E-value=3e-08 Score=100.60 Aligned_cols=159 Identities=21% Similarity=0.309 Sum_probs=99.1
Q ss_pred HHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc-cCcceeEEeccCCCChHHHHhhhcCCC
Q 004147 103 QLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNR 181 (771)
Q Consensus 103 iL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~ 181 (771)
+|+++|||||+++++.+.. ...+.+.-.-..++.|+|+||..+ +-.+|.+ -.+. ..|...+..
T Consensus 1 l~~~~gI~tp~~~~~~~~~---------~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~--v~~~----~el~~ai~~- 64 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNE---------DDSDSIEKILEDLGFPLFVKPASEGSSIGISK--VHNE----EELEEAIEK- 64 (203)
T ss_dssp HHHHTT-BB-SEEEEETTS---------HHHHHHHHHHHHHSSSEEEEESSTSTTTTEEE--ESSH----HHHHHHHHH-
T ss_pred ChhhcCCCCCCEEEEeccc---------ccchhHHHHHhhcCCCEEEEECCCCccEEEEE--cCCH----HHHHHHHHH-
Confidence 5889999999999998741 011112212234679999999986 3233322 1111 112222210
Q ss_pred cccccccccccccCcceEEeeccCCCCceeEEEEEC---CceeEEEeeeCCCCCCeeeec------CCCCceeeeeeCCH
Q 004147 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRN------PDGKEVRYPVLLTP 252 (771)
Q Consensus 182 sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG---~~~vhAe~RKSP~~DG~vrrN------~~gke~r~pv~Lt~ 252 (771)
..+.+...|.|||| .|+++-|-++| ..+...++...+ ++.+.-+ ........|..|++
T Consensus 65 ---------~~~~~~~vlVEefI--~G~E~tv~vl~~~~~~~~~~~ei~~~--~~~~d~~~Ky~~~~~~~~~~~pa~l~~ 131 (203)
T PF07478_consen 65 ---------AFKYDDDVLVEEFI--SGREFTVGVLGNGEPRVLPPVEIVFP--SEFYDYEAKYQPADSETEYIIPADLSE 131 (203)
T ss_dssp ---------HTTTHSEEEEEE----SSEEEEEEEEESSSTEEEEEEEEEES--SSEEEHHHHHSGCCSCEEEESS-SS-H
T ss_pred ---------HhhhcceEEEEeee--cccceEEEEEecCCcccCceEEEEcC--CCceehhheeccCCCceEEEecCCCCH
Confidence 22356678999999 79999999999 666666766665 3333211 13334455666765
Q ss_pred ----HHHHHHHHHHHHhcC-ceeeEeEEee-CCCcEEEecCCcc
Q 004147 253 ----NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVNGWS 290 (771)
Q Consensus 253 ----eEk~iA~ka~~afgq-~VcGfDLLRs-~g~syVcDVNGwS 290 (771)
+-+++|.+|.+++|. .+|=||+.-+ +|.+||+|||..+
T Consensus 132 ~~~~~i~~~a~~a~~~lg~~~~~RiD~rv~~~g~~~~lEiNt~P 175 (203)
T PF07478_consen 132 ELQEKIKEIAKKAFKALGCRGYARIDFRVDEDGKPYFLEINTIP 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEEEEEETTTEEEEEEEESS-
T ss_pred HHHHHHHHHHHHHHHHHcCCCceeEEEEeccCCceEEEeccCcc
Confidence 456789999999997 8999999877 7779999999654
No 55
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.73 E-value=6.2e-08 Score=108.05 Aligned_cols=201 Identities=16% Similarity=0.195 Sum_probs=112.6
Q ss_pred ccceeeccc---cCCCChHHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccc
Q 004147 56 ICDCLIAFY---SSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYF 129 (771)
Q Consensus 56 ~cd~lIsf~---s~GfpL~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~ 129 (771)
.||++++-+ |.--. ..+.++..+ ||+.++.++..+++||....+.|+++|||+|++. ++..
T Consensus 74 ~id~I~pg~g~~se~~~---~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~---------- 140 (449)
T TIGR00514 74 GADAIHPGYGFLSENAN---FAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVED---------- 140 (449)
T ss_pred CCCEEEeCCCccccCHH---HHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCC----------
Confidence 367777654 22211 223445666 5677999999999999999999999999998875 2321
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCc
Q 004147 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGT 209 (771)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~ 209 (771)
.++.... -..+++|+|+||++|. ....++.-.+.- -....++.....+ .....++.+|+||||.. ++
T Consensus 141 --~~e~~~~-~~~ig~PvvvKP~~g~-gs~Gv~~v~~~~-el~~~~~~~~~~~-------~~~~~~~~vlvEe~i~g-~~ 207 (449)
T TIGR00514 141 --EEENVRI-AKRIGYPVIIKATAGG-GGRGMRVVREPD-ELVKSISMTRAEA-------KAAFGNDGVYIEKYIEN-PR 207 (449)
T ss_pred --HHHHHHH-HHHhCCCEEEEeCCCC-CCCccEEECCHH-HHHHHHHHHHHHH-------HHhCCCCCEEEEECCCC-Ce
Confidence 1122211 1235689999999986 111122111110 0111111100000 00013456999999953 55
Q ss_pred eeEEEEEC---CceeEEEeeeCCCCCCeeeecCCCCce--eeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEee-C
Q 004147 210 DVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEV--RYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC-E 278 (771)
Q Consensus 210 DIKVytVG---~~~vhAe~RKSP~~DG~vrrN~~gke~--r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs-~ 278 (771)
.+-|-+++ ++.++...|-. .+.+. +.+-. .-+..|++ +-+++|.++++++|.. ++.||++.+ +
T Consensus 208 e~~v~v~~d~~g~~~~~~~~~~-----~~~~~-~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~ 281 (449)
T TIGR00514 208 HVEIQVLADKYGNAIYLGERDC-----SIQRR-HQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKN 281 (449)
T ss_pred EEEEEEEEcCCCCEEEEecccc-----Cceec-ccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCC
Confidence 56665554 34444332211 01110 11111 11124555 4456789999999974 445999987 6
Q ss_pred CCcEEEecCC
Q 004147 279 GRSYVCDVNG 288 (771)
Q Consensus 279 g~syVcDVNG 288 (771)
|.+||+|||.
T Consensus 282 g~~~viEiNp 291 (449)
T TIGR00514 282 GEFYFMEMNT 291 (449)
T ss_pred CCEEEEEEEC
Confidence 7789999994
No 56
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.72 E-value=2.5e-08 Score=122.85 Aligned_cols=197 Identities=19% Similarity=0.221 Sum_probs=119.5
Q ss_pred cceeeccccCCCCh--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-eccCCCccccccccc
Q 004147 57 CDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-NREVPYQELDYFIEE 132 (771)
Q Consensus 57 cd~lIsf~s~GfpL--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~-~r~~p~~~~~~~~e~ 132 (771)
+|++++-| ||-- ....+.++..+ +|+-++.+...+++||..+.+++.++|||+|+.... ..+ .
T Consensus 75 iDaI~PGy--GflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~-----------~ 141 (1143)
T TIGR01235 75 VDAIHPGY--GFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPET-----------M 141 (1143)
T ss_pred CCEEEECC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCC-----------H
Confidence 56666544 2311 12234455656 567788999999999999999999999999986532 111 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccccc-------ccCcceEEeeccC
Q 004147 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-------RREGSYIYEEFMP 205 (771)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~-------r~~gsyIyEEFi~ 205 (771)
++.... ...+++|+|+||..|. -|.|++ . +.|.+ ++..-.... -.++.+++||||.
T Consensus 142 eea~~~-ae~iGyPvIVKP~~GG-----------GGrG~r-i---V~~~e-EL~~a~~~a~~ea~~~fg~~~vlIEefI~ 204 (1143)
T TIGR01235 142 EEVLDF-AAAIGYPVIIKASWGG-----------GGRGMR-V---VRSEA-DVADAFQRAKSEAKAAFGNDEVYVEKLIE 204 (1143)
T ss_pred HHHHHH-HHHcCCCEEEEECCCC-----------CCCccE-E---eCCHH-HHHHHHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 122211 1245699999999886 223332 2 22211 111000000 1246789999995
Q ss_pred CCCceeEEEEECCc---eeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEee
Q 004147 206 TGGTDVKVYTVGPE---YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC 277 (771)
Q Consensus 206 t~G~DIKVytVG~~---~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs 277 (771)
+++.|.|-++|+. ++|...|-..+ -||+..--|..-...|++ +-.++|.++++++|.. ++.||++..
T Consensus 205 -g~reIeVqVlgD~~G~vv~l~eRdcsv----qrr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd 279 (1143)
T TIGR01235 205 -RPRHIEVQLLGDKHGNVVHLFERDCSV----QRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVD 279 (1143)
T ss_pred -CCeEEEEEEEEeCCCCEEEEEeccccc----cccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEe
Confidence 4678888888654 67777674421 122211112221124555 4557899999999954 666999987
Q ss_pred -CCCcEEEecCC
Q 004147 278 -EGRSYVCDVNG 288 (771)
Q Consensus 278 -~g~syVcDVNG 288 (771)
+|++||+|||-
T Consensus 280 ~dg~~yfIEVNP 291 (1143)
T TIGR01235 280 NDGKFYFIEVNP 291 (1143)
T ss_pred CCCcEEEEEeec
Confidence 46799999993
No 57
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.71 E-value=1.3e-07 Score=105.94 Aligned_cols=185 Identities=18% Similarity=0.208 Sum_probs=111.4
Q ss_pred HHHHHHHhcCCc-ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 004147 72 KAESYATLRKPF-LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (771)
Q Consensus 72 kai~y~~lr~p~-~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (771)
...++++..+.. .-.+..+..+.+||..+-++|+++|||+|++..+... . +...++. .++.|+|+|
T Consensus 77 ~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~~~~~~--~-------e~~~~~~----~~g~PvVVK 143 (434)
T PLN02257 77 GLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDP--A-------AAKKYIK----EQGAPIVVK 143 (434)
T ss_pred HHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeEEeCCH--H-------HHHHHHH----HcCCCEEEE
Confidence 446666666544 4578888899999999999999999999998877431 0 1122221 356899999
Q ss_pred eccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc------cc-ccCcceEEeeccCCCCceeEEEEE--CCcee
Q 004147 151 PVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR------RV-RREGSYIYEEFMPTGGTDVKVYTV--GPEYA 221 (771)
Q Consensus 151 pv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~------~~-r~~gsyIyEEFi~t~G~DIKVytV--G~~~v 221 (771)
|..+. .|-|+. + +.|.+...+ -+. .+ ..+..+|.||||. |+.+-|.++ |..+.
T Consensus 144 p~~~~-----------~GkGV~-i---v~~~~el~~-a~~~~~~~~~fg~~~~~vlIEefi~--G~E~Sv~~~~dG~~~~ 205 (434)
T PLN02257 144 ADGLA-----------AGKGVV-V---AMTLEEAYE-AVDSMLVKGAFGSAGSEVVVEEFLD--GEEASFFALVDGENAI 205 (434)
T ss_pred cCCCC-----------CCCCEE-E---ECCHHHHHH-HHHHHHhhhhccCCCCeEEEEECCC--CCEEEEEEEECCCcEE
Confidence 99764 333432 1 111111000 000 11 1245699999997 556666443 32232
Q ss_pred EE-Eee-eCCCCCCeeeecCCCCceeeeee-CCHHHHH-HHHH-------HHHHhcCceee---EeEEee--CCCcEEEe
Q 004147 222 HA-EAR-KSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQ-MARE-------VCIAFRQAVCG---FDLLRC--EGRSYVCD 285 (771)
Q Consensus 222 hA-e~R-KSP~~DG~vrrN~~gke~r~pv~-Lt~eEk~-iA~k-------a~~afgq~VcG---fDLLRs--~g~syVcD 285 (771)
.. +.+ .....||+..-|+.|-+.-.|.. ++++..+ ++.. +.++.|..+.| +|++-+ +|+|||+|
T Consensus 206 pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~p~vLE 285 (434)
T PLN02257 206 PLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGLPKLLE 285 (434)
T ss_pred EEEeeeecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCCEEEEE
Confidence 21 111 23456888888887655444553 7774444 3333 33466776556 677765 46699999
Q ss_pred cC
Q 004147 286 VN 287 (771)
Q Consensus 286 VN 287 (771)
+|
T Consensus 286 ~N 287 (434)
T PLN02257 286 YN 287 (434)
T ss_pred EE
Confidence 99
No 58
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.71 E-value=1.7e-07 Score=115.37 Aligned_cols=195 Identities=13% Similarity=0.188 Sum_probs=119.0
Q ss_pred cceeeccccCCCChHHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
+|.+|+-++.-.++ ....-++..+ |+.-++.++...+.||.+..++|++.|||+|++..+... ++.
T Consensus 631 ~dgVI~~~g~~~~~-~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~~~~s~------------ee~ 697 (1068)
T PRK12815 631 IKGVIVQFGGQTAI-NLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDE------------EEA 697 (1068)
T ss_pred CCEEEEecCcHHHH-HHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeEEeCCH------------HHH
Confidence 45666544433222 2222233444 455688999999999999999999999999999988542 233
Q ss_pred eeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 004147 136 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVy 214 (771)
.... ..+++|+|+||..+. ..+++|.+... ...+.++.. ...++.+|+||||.-.--+|-++
T Consensus 698 ~~~~-~~igyPvVVKP~~~~Gg~gv~iv~~~e---eL~~~l~~~-------------~s~~~~vlIeefI~G~E~~Vd~i 760 (1068)
T PRK12815 698 FAFA-KRIGYPVLIRPSYVIGGQGMAVVYDEP---ALEAYLAEN-------------ASQLYPILIDQFIDGKEYEVDAI 760 (1068)
T ss_pred HHHH-HhcCCCEEEEeCCCCCCCCEEEECCHH---HHHHHHHHh-------------hcCCCCEEEEEeecCceEEEEEE
Confidence 2211 235699999999875 12233222211 011122211 12456799999994333445555
Q ss_pred EECCcee-EE-EeeeCCCCCCeeeecCCCCcee---eeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEEE
Q 004147 215 TVGPEYA-HA-EARKSPVVDGVVMRNPDGKEVR---YPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVC 284 (771)
Q Consensus 215 tVG~~~v-hA-e~RKSP~~DG~vrrN~~gke~r---~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~g~syVc 284 (771)
.=|.... .+ +.+..+ +..|.|... .|..|++ +-+++|.++++++|. .++.||++..++++||+
T Consensus 761 ~dg~~v~i~~i~e~~e~-------~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~~~~yvi 833 (1068)
T PRK12815 761 SDGEDVTIPGIIEHIEQ-------AGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLANDEIYVL 833 (1068)
T ss_pred EcCCceEEeeEEEEeec-------cCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEECCcEEEE
Confidence 4454432 22 222111 223545432 2456775 456788999999984 47779999999999999
Q ss_pred ecCC
Q 004147 285 DVNG 288 (771)
Q Consensus 285 DVNG 288 (771)
|||-
T Consensus 834 EiNp 837 (1068)
T PRK12815 834 EVNP 837 (1068)
T ss_pred EEeC
Confidence 9994
No 59
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.67 E-value=2e-07 Score=101.44 Aligned_cols=196 Identities=21% Similarity=0.255 Sum_probs=140.4
Q ss_pred cceeeccccCCCChHHHHHHHHhcCCccc--CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKPFLV--NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p~~i--Ndl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (771)
+|++++-+..-+ |.+-.+-|+..|.-++ =+.++..++.||...|+.++++|||+|.+..++.- +.|...-.
T Consensus 67 Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~~v~t~------~el~~a~~ 139 (329)
T PF15632_consen 67 IDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYWRVRTA------DELKAAYE 139 (329)
T ss_pred CeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEEEeCCH------HHHHHHHH
Confidence 567777666656 7777777777776544 46889999999999999999999999999998642 11211112
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccccc------------ccCcceEEee
Q 004147 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV------------RREGSYIYEE 202 (771)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~------------r~~gsyIyEE 202 (771)
.+... +.|+.+||..|. -|-|.++|-+....-...+.|+...+ ..--.+|+.|
T Consensus 140 ~l~~~----~~~~CvKP~~g~-----------gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMe 204 (329)
T PF15632_consen 140 ELRFP----GQPLCVKPAVGI-----------GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVME 204 (329)
T ss_pred hcCCC----CceEEEecccCC-----------CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEec
Confidence 22233 368999999998 44454433333333333444443322 1356799999
Q ss_pred ccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCc-eeeEeEEe-eCCC
Q 004147 203 FMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLR-CEGR 280 (771)
Q Consensus 203 Fi~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~afgq~-VcGfDLLR-s~g~ 280 (771)
|++-.=--|=|..-++++++|-.|+= . +.+..+.-.++--++|.++|++||++ +.+|.+-. .+|.
T Consensus 205 yL~G~EySVD~l~~~G~viaaV~R~K---~----------G~~q~l~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~~g~ 271 (329)
T PF15632_consen 205 YLPGPEYSVDCLADEGRVIAAVPRRK---L----------GRRQVLENDEELIELARRLAEAFGLDGLFNIQFRYDEDGN 271 (329)
T ss_pred CCCCCeEEEEEEecCCEEEEEEEEEe---c----------CceeEEEECHHHHHHHHHHHHHhCCCceEEEEEEEcCCCC
Confidence 99874444556666688888888865 1 25567788899999999999999997 56899998 6899
Q ss_pred cEEEecC
Q 004147 281 SYVCDVN 287 (771)
Q Consensus 281 syVcDVN 287 (771)
|+++|+|
T Consensus 272 p~LLEIN 278 (329)
T PF15632_consen 272 PKLLEIN 278 (329)
T ss_pred EEEEEeC
Confidence 9999999
No 60
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.62 E-value=2.8e-07 Score=103.79 Aligned_cols=204 Identities=17% Similarity=0.189 Sum_probs=116.5
Q ss_pred cceeeccccCCCChH--HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 004147 57 CDCLIAFYSSGYPLE--KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (771)
Q Consensus 57 cd~lIsf~s~GfpL~--kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e 131 (771)
+|++++.| ||--+ ...+.++..+ +|+-++.++..+++||..+.++|+++|||+|++. .+..
T Consensus 78 ~daI~pg~--g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~------------ 143 (467)
T PRK12833 78 ADAIHPGY--GFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVAS------------ 143 (467)
T ss_pred CCEEEECC--CccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCC------------
Confidence 56677654 33111 1233444555 5788899999999999999999999999998875 3321
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCcee
Q 004147 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDV 211 (771)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DI 211 (771)
.++.... ...+++|+|+||+.|. -+..++.-.+.- .....|+... ++-. ..+ .++.+++||||+. |+.|
T Consensus 144 ~~e~~~~-~~~igyPvvvKp~~gg-gg~Gv~~v~~~~-eL~~a~~~~~---~~~~---~~~-~~~~vlvEefi~~-~~ei 212 (467)
T PRK12833 144 LDAALEV-AARIGYPLMIKAAAGG-GGRGIRVAHDAA-QLAAELPLAQ---REAQ---AAF-GDGGVYLERFIAR-ARHI 212 (467)
T ss_pred HHHHHHH-HHHhCCCEEEEECCCC-CCCeEEEECCHH-HHHHHHHHHH---HHHH---Hhc-CCCcEEEEecCCC-CEEE
Confidence 1122221 1236789999999986 122222222110 0111121110 0000 011 3567899999976 6778
Q ss_pred EEEEECCc--eeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEee--CCCcE
Q 004147 212 KVYTVGPE--YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC--EGRSY 282 (771)
Q Consensus 212 KVytVG~~--~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs--~g~sy 282 (771)
-|-++|+. ++|.-.|..- +. |++..--+..-+..|++ +-+++|.++++++|.. ++.||++.. +|.+|
T Consensus 213 ~v~v~~dg~~~~~~~~~~~~-~~---r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~~~ 288 (467)
T PRK12833 213 EVQILGDGERVVHLFERECS-LQ---RRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFY 288 (467)
T ss_pred EEEEEeCCCcEEEEEEeecc-cc---cCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCCEE
Confidence 77777763 4555444321 00 11100000011123554 5567899999999986 345898876 36689
Q ss_pred EEecCCc
Q 004147 283 VCDVNGW 289 (771)
Q Consensus 283 VcDVNGw 289 (771)
|+|||.-
T Consensus 289 ~iEvNpR 295 (467)
T PRK12833 289 FIEMNTR 295 (467)
T ss_pred EEEEECC
Confidence 9999953
No 61
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.61 E-value=2e-07 Score=106.00 Aligned_cols=184 Identities=15% Similarity=0.135 Sum_probs=109.5
Q ss_pred HHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEe
Q 004147 73 AESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEK 150 (771)
Q Consensus 73 ai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeK 150 (771)
..+.++..| ||+.-+..+..++.||..+.++++++|||+|++.++..+. .++... +....++.|+|+|
T Consensus 118 iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~----------~eel~~~~~~~~IGyPvVVK 187 (493)
T PRK06524 118 TEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDS----------YDELSALAHGAGLGDDLVVQ 187 (493)
T ss_pred HHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCC----------HHHHHHHHHhccCCCcEEEE
Confidence 344445566 5678999999999999999999999999999998863220 111111 1112367899999
Q ss_pred ecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeE--EEEECC-ceeEEEee
Q 004147 151 PVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK--VYTVGP-EYAHAEAR 226 (771)
Q Consensus 151 pv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIK--VytVG~-~~vhAe~R 226 (771)
|..|. -+++++...... ...++. ..-.+..+++|+||. |.-+= |++-+. .+++...+
T Consensus 188 P~~GGSS~GV~~Vkn~eE---Le~a~~--------------~~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~ 248 (493)
T PRK06524 188 TPYGDSGSTTFFVRGQRD---WDKYAG--------------GIVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMT 248 (493)
T ss_pred ECCCCCCcCEEEeCCHHH---HHHHHH--------------HhcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEecccc
Confidence 99874 233332222111 111111 111224478899995 54432 243332 22221111
Q ss_pred eCCCCCCeeeecCCCCc---eeeeeeCCH----HHHHHHHHHHHHhc----CceeeEeEEee--CCCcEEEecC
Q 004147 227 KSPVVDGVVMRNPDGKE---VRYPVLLTP----NEKQMAREVCIAFR----QAVCGFDLLRC--EGRSYVCDVN 287 (771)
Q Consensus 227 KSP~~DG~vrrN~~gke---~r~pv~Lt~----eEk~iA~ka~~afg----q~VcGfDLLRs--~g~syVcDVN 287 (771)
. ++-..++. .-.++. .-.|..|++ +-+++|.+++++++ ..+++||++.. +|+.|++|||
T Consensus 249 e-~vg~~Ei~-~yr~G~~~~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEIN 320 (493)
T PRK06524 249 S-LVGYPELT-PYRGGWCGNDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVN 320 (493)
T ss_pred c-cccceEEE-EccCCeEEEEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEe
Confidence 1 10000111 012222 234778888 77889999999984 68899999998 4789999999
No 62
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.60 E-value=2e-07 Score=97.87 Aligned_cols=151 Identities=22% Similarity=0.243 Sum_probs=115.2
Q ss_pred HHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEee
Q 004147 72 KAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKP 151 (771)
Q Consensus 72 kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKp 151 (771)
.+-+|++.-|+ +..+.+.+-|||++|..|+.+ +++|.|...- +.| +-+|+||
T Consensus 94 i~E~~~~nLG~----S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e~~-~~~----------------------~k~ViKp 145 (307)
T COG1821 94 IYEEYVENLGC----SPRAIRVAADKRLTYKALRDA-VKQPPTREWA-EEP----------------------KKYVIKP 145 (307)
T ss_pred HHHHHhHhhCC----CHHHHhHhhhHHHHHHHHhhh-ccCCCccccc-cCC----------------------ceEEecc
Confidence 45667776664 678999999999999999999 9999998532 112 4699999
Q ss_pred ccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCC--------CCceeEEEEECCceeEE
Q 004147 152 VHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT--------GGTDVKVYTVGPEYAHA 223 (771)
Q Consensus 152 v~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t--------~G~DIKVytVG~~~vhA 223 (771)
.+|. +|.|. +|- .-. .++ .|-||||+- .|+++.+.+|..+++.-
T Consensus 146 ~dgC-----------gge~i--~~~-------~~~-------pd~-~i~qEfIeG~~lSVSL~~GEkv~pLsvNrQfi~~ 197 (307)
T COG1821 146 ADGC-----------GGEGI--LFG-------RDF-------PDI-EIAQEFIEGEHLSVSLSVGEKVLPLSVNRQFIIF 197 (307)
T ss_pred cccC-----------Cccee--ecc-------CCC-------cch-hhHHHhcCCcceEEEEecCCccccceechhhhhh
Confidence 9997 44443 221 111 222 788999873 57777777777665432
Q ss_pred EeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhc--CceeeEeEEeeCCCcEEEecCC
Q 004147 224 EARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR--QAVCGFDLLRCEGRSYVCDVNG 288 (771)
Q Consensus 224 e~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~afg--q~VcGfDLLRs~g~syVcDVNG 288 (771)
+..+.--.||..+++-+|+.+-.+.|+++.+-++ -...||||.-+ +.|||+|||-
T Consensus 198 ---------~~~~~~y~gg~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D~pYvIEINp 254 (307)
T COG1821 198 ---------AGSELVYNGGRTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-DEPYVIEINP 254 (307)
T ss_pred ---------ccceeeeccCcCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec-CCcEEEEecC
Confidence 3456667789999999999999999999999998 35789999999 9999999993
No 63
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=98.60 E-value=2.1e-07 Score=94.55 Aligned_cols=168 Identities=26% Similarity=0.334 Sum_probs=106.3
Q ss_pred CCchhhhHhhhHHHHHHHHHh-------CCCCC-CCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCc
Q 004147 86 NELEPQHLLHDRRKVYEQLEK-------YGIPV-PRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 157 (771)
Q Consensus 86 Ndl~~q~~l~DR~~~~qiL~~-------~gIP~-P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedH 157 (771)
|+|.+.+.+.||--++..|.+ ...|+ +.|.+-+. .+.+.- -..|+|+|--.+-
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh-------------~em~s~----~~fPvVvKvG~~h-- 61 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNH-------------REMLSA----PRFPVVVKVGHAH-- 61 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSG-------------GGGCS-----SSSSEEEEESS-S--
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCCh-------------hhhccC----CCCCEEEEEcccc--
Confidence 889999999998755544432 34443 33333322 233321 1369999987665
Q ss_pred ceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcce-EEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeee
Q 004147 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSY-IYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVM 236 (771)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsy-IyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vr 236 (771)
.|-|- + |+.|....-|-.. -+....+| -.|-||.. --||||--+|++| -|+.|+|. .|.|.
T Consensus 62 ---------~G~GK--v--kv~n~~~~qDi~s-ll~~~~~Y~T~EPfId~-kyDirvqkIG~~y-kA~~R~si--s~nWK 123 (203)
T PF02750_consen 62 ---------AGMGK--V--KVDNQQDFQDIAS-LLAITKDYATTEPFIDA-KYDIRVQKIGNNY-KAYMRTSI--SGNWK 123 (203)
T ss_dssp ---------TTTTE--E--EE-SHHHHHHHHH-HHHHHTS-EEEEE---E-EEEEEEEEETTEE-EEEEEEES--SSTSS
T ss_pred ---------CceeE--E--EEccHHHHHHHHH-HHHhcCceEEeeccccc-eeEEEEEEEcCeE-EEEEEccc--ccccc
Confidence 45453 2 4655553322111 22333344 56778855 6899999999997 89999996 89999
Q ss_pred ecCCCCceeeeeeCCHHHHHHHHHHHHHh-cCceeeEeEEee-CCCcEEEecCCccc
Q 004147 237 RNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRC-EGRSYVCDVNGWSF 291 (771)
Q Consensus 237 rN~~gke~r~pv~Lt~eEk~iA~ka~~af-gq~VcGfDLLRs-~g~syVcDVNGwSF 291 (771)
+|+ |-..-+.|.+|+..|...-.+++.| |++|||+|.|-+ .|+-|++|||+-|+
T Consensus 124 ~N~-gsa~lEqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnds~m 179 (203)
T PF02750_consen 124 ANT-GSAMLEQIAMTERYKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVNDSSM 179 (203)
T ss_dssp TTS-SSEEEEEE---HHHHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-TT-
T ss_pred ccc-cchheeecCCChHHHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecCCcc
Confidence 997 4566679999999999999999999 999999999999 66788999998654
No 64
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.60 E-value=1.3e-07 Score=116.84 Aligned_cols=198 Identities=20% Similarity=0.232 Sum_probs=116.7
Q ss_pred cceeeccccCCCCh--HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEE-EeccCCCccccccccc
Q 004147 57 CDCLIAFYSSGYPL--EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYAL-VNREVPYQELDYFIEE 132 (771)
Q Consensus 57 cd~lIsf~s~GfpL--~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~-~~r~~p~~~~~~~~e~ 132 (771)
+|++++.| ||-- ....+.++..+ +|+-++.+...+++||..+.++|+++|||+|+... ...+ .
T Consensus 79 iDaI~Pgy--GflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s-----------~ 145 (1146)
T PRK12999 79 VDAIHPGY--GFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDD-----------I 145 (1146)
T ss_pred CCEEEeCC--CccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCC-----------H
Confidence 67777754 3321 12233344555 46778999999999999999999999999977654 2111 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccc---cccc---ccccccCcceEEeeccCC
Q 004147 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSE---FHPD---VRRVRREGSYIYEEFMPT 206 (771)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~---~~~~---~~~~r~~gsyIyEEFi~t 206 (771)
++.... ...+++|+|+||.+|. .|-|++ + +.+.... |.-- ......++.+++||||+.
T Consensus 146 eea~~~-a~~iGyPvVVKP~~Gg-----------GGrGv~-v---V~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g 209 (1146)
T PRK12999 146 EEALEF-AEEIGYPIMLKASAGG-----------GGRGMR-I---VRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN 209 (1146)
T ss_pred HHHHHH-HHHhCCCEEEEECCCC-----------CCCCeE-E---eCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 222221 1245689999999986 222332 1 2211110 1000 000012567999999973
Q ss_pred CCceeEEEEEC---CceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhcCceee-EeEEeeC
Q 004147 207 GGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQAVCG-FDLLRCE 278 (771)
Q Consensus 207 ~G~DIKVytVG---~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~~afgq~VcG-fDLLRs~ 278 (771)
++.|-|-++| ++++|--.|-..+ .||+..--|..-...|+++ -.++|.++++++|..-+| ||++.+.
T Consensus 210 -~~~ieVqvl~D~~G~vv~l~erdcsv----qrr~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~ 284 (1146)
T PRK12999 210 -PRHIEVQILGDKHGNVVHLYERDCSV----QRRHQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDA 284 (1146)
T ss_pred -CeEEEEEEEEECCCCEEEEEccccce----eecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC
Confidence 5667776665 3556654553321 2222111121111256654 455899999999986544 9999874
Q ss_pred -CCcEEEecCC
Q 004147 279 -GRSYVCDVNG 288 (771)
Q Consensus 279 -g~syVcDVNG 288 (771)
|++|++|||-
T Consensus 285 dg~~yfIEINp 295 (1146)
T PRK12999 285 DGNFYFIEVNP 295 (1146)
T ss_pred CCCEEEEEEEC
Confidence 5799999994
No 65
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=3.4e-07 Score=99.16 Aligned_cols=191 Identities=18% Similarity=0.226 Sum_probs=135.6
Q ss_pred HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 004147 72 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (771)
Q Consensus 72 kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (771)
....|++..+ ||+......=...-||..+-++++..|+|++.++...++.+ .+..++-.-..++.|+++|
T Consensus 78 ~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~---------~~~~~e~~~~~l~~p~~Vk 148 (317)
T COG1181 78 TIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEY---------SSVIVEEVEEGLGFPLFVK 148 (317)
T ss_pred hHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccc---------hhHHHHHhhcccCCCEEEE
Confidence 6678888888 99999999999999999999999999999999999987521 1112222223467999999
Q ss_pred eccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCce---eEEEeee
Q 004147 151 PVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEY---AHAEARK 227 (771)
Q Consensus 151 pv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~---vhAe~RK 227 (771)
|...- --+.+.-.++-|-|- +..+ ...+.+...+.|+|+. |+.|.|=+.|... +..--+.
T Consensus 149 p~~~g-SSvg~~~v~~~~d~~-----------~~~e---~a~~~d~~vl~e~~~~--~rei~v~vl~~~~~~~~l~~~eI 211 (317)
T COG1181 149 PAREG-SSVGRSPVNVEGDLQ-----------SALE---LAFKYDRDVLREQGIT--GREIEVGVLGNDYEEQALPLGEI 211 (317)
T ss_pred cCCcc-ceeeEEEeeeccchH-----------HHHH---HHHHhCCceeeccCCC--cceEEEEecCCcccceecCceEE
Confidence 98842 123444333333332 2111 1446788889999999 9999999999865 1111122
Q ss_pred CCCCCC-ee----eecCCCCceee--eeeCCH----HHHHHHHHHHHHhc-CceeeEeEEeeC--CCcEEEecCCcc
Q 004147 228 SPVVDG-VV----MRNPDGKEVRY--PVLLTP----NEKQMAREVCIAFR-QAVCGFDLLRCE--GRSYVCDVNGWS 290 (771)
Q Consensus 228 SP~~DG-~v----rrN~~gke~r~--pv~Lt~----eEk~iA~ka~~afg-q~VcGfDLLRs~--g~syVcDVNGwS 290 (771)
-| +| .| -.|+++++..+ |-.||+ +-+++|.+|.+|+| ..+||+|++-.. |..|++|||.-+
T Consensus 212 ~~--~~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~P 286 (317)
T COG1181 212 PP--KGEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNP 286 (317)
T ss_pred ec--CCCeEEeeeccccCCCCceeeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCC
Confidence 22 33 33 26788444333 223665 56889999999999 999999999997 789999999544
No 66
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.55 E-value=2.8e-07 Score=113.29 Aligned_cols=194 Identities=19% Similarity=0.226 Sum_probs=117.9
Q ss_pred cceeeccccCCCChHHHHH-----HHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccc
Q 004147 57 CDCLIAFYSSGYPLEKAES-----YATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 130 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~-----y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~ 130 (771)
+|++++.++...+|.-++. .++..+ ++.-.+.++..+++||....+.|+++|||+|++..+...
T Consensus 83 ~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~---------- 152 (1066)
T PRK05294 83 PDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSM---------- 152 (1066)
T ss_pred cCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCH----------
Confidence 5778876653333433331 345566 456689999999999999999999999999999988642
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-cc--ccCcceEEeeccCCC
Q 004147 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RV--RREGSYIYEEFMPTG 207 (771)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~--r~~gsyIyEEFi~t~ 207 (771)
++.... -..+++|+|+||..|. .|.|+. + +.|... +..-.. .+ ...+.+|+||||+-.
T Consensus 153 --~e~~~~-~~~ig~PvVVKP~~g~-----------gg~Gv~-i---v~~~ee-L~~a~~~~~~~s~~~~vlvEe~I~G~ 213 (1066)
T PRK05294 153 --EEALEV-AEEIGYPVIIRPSFTL-----------GGTGGG-I---AYNEEE-LEEIVERGLDLSPVTEVLIEESLLGW 213 (1066)
T ss_pred --HHHHHH-HHHcCCCeEEEcCCCC-----------CCCCeE-E---ECCHHH-HHHHHHHHHhhCCCCeEEEEEcccCc
Confidence 122211 1235689999999875 222332 1 222111 110000 01 134578999999631
Q ss_pred CceeEEEEECC---cee--EEEeeeCCCCCCeeeecCCCCcee--eee-eCCHHH----HHHHHHHHHHhcCc--eeeEe
Q 004147 208 GTDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPNE----KQMAREVCIAFRQA--VCGFD 273 (771)
Q Consensus 208 G~DIKVytVG~---~~v--hAe~RKSP~~DG~vrrN~~gke~r--~pv-~Lt~eE----k~iA~ka~~afgq~--VcGfD 273 (771)
..+=+-++.+ +.+ ..+.+..| .| .|.|++. .|. .|++++ +++|.++++++|.. +|.||
T Consensus 214 -~Eisv~v~rd~~g~~~~~~~~e~~dp--~g-----ih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~ve 285 (1066)
T PRK05294 214 -KEYEYEVMRDKNDNCIIVCSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQ 285 (1066)
T ss_pred -eEEEEEEEEcCCCCEEEEeeeeeccc--cc-----eecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEE
Confidence 3343333322 111 12333333 11 2444432 234 577644 58999999999997 99999
Q ss_pred EEee--CCCcEEEecC
Q 004147 274 LLRC--EGRSYVCDVN 287 (771)
Q Consensus 274 LLRs--~g~syVcDVN 287 (771)
+.-+ +|+.||+|||
T Consensus 286 f~~~~~~g~~~viEiN 301 (1066)
T PRK05294 286 FALNPKDGRYIVIEMN 301 (1066)
T ss_pred EEEECCCCcEEEEEee
Confidence 9987 3568999999
No 67
>PLN02735 carbamoyl-phosphate synthase
Probab=98.53 E-value=1.4e-06 Score=107.59 Aligned_cols=197 Identities=12% Similarity=0.138 Sum_probs=123.5
Q ss_pred ccceeeccccCCCChHHHH-----HHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 004147 56 ICDCLIAFYSSGYPLEKAE-----SYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~kai-----~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 129 (771)
.+|++++-++.-.++.-|+ ..++..+ |++-++..+..++.||...-++|+++|||+|++..+...
T Consensus 98 ~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~--------- 168 (1102)
T PLN02735 98 RPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTL--------- 168 (1102)
T ss_pred CCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCeeEeCCH---------
Confidence 5788887664334443333 2345666 678899999999999999999999999999999888542
Q ss_pred ccccceeeecCeecc-CcEEEeecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCC
Q 004147 130 IEEEDFVEVHGNRFW-KPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTG 207 (771)
Q Consensus 130 ~e~~d~i~v~g~~~~-kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~ 207 (771)
++.... -..++ +|+|+||..|. ..+++|-+.... ....++.. .....++.+|+||||.-
T Consensus 169 ---eea~~~-~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eE---L~~a~~~a-----------~~~s~~~~VLVEe~I~G- 229 (1102)
T PLN02735 169 ---DECFEI-AEDIGEFPLIIRPAFTLGGTGGGIAYNKEE---FETICKAG-----------LAASITSQVLVEKSLLG- 229 (1102)
T ss_pred ---HHHHHH-HHHhCCCCEEEEeCCCCCCCceEEECCHHH---HHHHHHHH-----------HhcCCCCeEEEEEecCC-
Confidence 111111 11344 89999999853 123333222111 11111110 01134667899999963
Q ss_pred CceeEEEEECC---ce--eEEEeeeCCCCCCeeeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhcC--ceeeEe
Q 004147 208 GTDVKVYTVGP---EY--AHAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQ--AVCGFD 273 (771)
Q Consensus 208 G~DIKVytVG~---~~--vhAe~RKSP~~DG~vrrN~~gke~r--~pv-~Lt~e----Ek~iA~ka~~afgq--~VcGfD 273 (771)
.+-+=|=++++ +. +..+.+..| .| .|.|... .|. .|+++ -+++|.+|++++|. .+|.||
T Consensus 230 ~kE~ev~Vl~D~~g~~i~v~~ie~~dp--~g-----vh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVq 302 (1102)
T PLN02735 230 WKEYELEVMRDLADNVVIICSIENIDP--MG-----VHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQ 302 (1102)
T ss_pred CeEEEEEEEEcCCCCEEEEeeEEEEcC--Cc-----cccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 24566666643 22 233444444 22 2434432 244 47764 44569999999997 699999
Q ss_pred EEee--CCCcEEEecC
Q 004147 274 LLRC--EGRSYVCDVN 287 (771)
Q Consensus 274 LLRs--~g~syVcDVN 287 (771)
+.-+ +|..||+|||
T Consensus 303 f~l~~~~g~~~ViEVN 318 (1102)
T PLN02735 303 FAVNPVDGEVMIIEMN 318 (1102)
T ss_pred EEEECCCCcEEEEEec
Confidence 9876 5678999999
No 68
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=98.53 E-value=1.2e-07 Score=96.62 Aligned_cols=50 Identities=42% Similarity=0.495 Sum_probs=41.7
Q ss_pred HHHHHHHhc--CCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhhhcccC
Q 004147 494 VNEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (771)
Q Consensus 494 Ae~LG~~fR--yp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (771)
+.+||+.|| |+ +++.+......++.|+||+..||+.||++|+.||+.-.+
T Consensus 27 ~~~~G~~lr~~y~----~~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~~~gl~~~~~ 78 (242)
T cd07061 27 AFELGRYFRQRYG----ELLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDG 78 (242)
T ss_pred HHHHHHHHHHHHH----HhcccccCCCCeeEEEECCCcHHHHHHHHHHHhcCCCcc
Confidence 678999999 85 344335567789999999999999999999999998665
No 69
>PLN02735 carbamoyl-phosphate synthase
Probab=98.52 E-value=6.9e-07 Score=110.28 Aligned_cols=171 Identities=12% Similarity=0.195 Sum_probs=109.1
Q ss_pred CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeE
Q 004147 82 PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMI 161 (771)
Q Consensus 82 p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~I 161 (771)
+++..+.++..++.||.+..++|+++|||+|++..+... ++...+ -..+++|+|+||..|.
T Consensus 688 ~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~------------eea~~~-a~~iGyPvvVKP~~g~------ 748 (1102)
T PLN02735 688 KIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSE------------ADALAI-AKRIGYPVVVRPSYVL------ 748 (1102)
T ss_pred EEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEeCCH------------HHHHHH-HHhcCCCeEEEeCCCC------
Confidence 467889999999999999999999999999999877531 222221 1246799999999874
Q ss_pred EeccCCCChHHHHhhhcCCCccccccccc---ccccCcceEEeeccCCCCceeEEEEECC---ceeE--EEeeeCCCCCC
Q 004147 162 YYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAH--AEARKSPVVDG 233 (771)
Q Consensus 162 Yyp~~~GgG~~rLfrkign~sS~~~~~~~---~~r~~gsyIyEEFi~t~G~DIKVytVG~---~~vh--Ae~RKSP~~DG 233 (771)
.|-|+. .+.|... +..-+. ....++.+|+|+||.. |+-+=|-++++ +++. .+.+.-
T Consensus 749 -----gG~G~~----iV~~~ee-L~~al~~a~~~~~~~~vlVEefI~~-g~Ei~V~vl~D~~G~vv~~~i~e~~~----- 812 (1102)
T PLN02735 749 -----GGRAME----IVYSDDK-LKTYLETAVEVDPERPVLVDKYLSD-ATEIDVDALADSEGNVVIGGIMEHIE----- 812 (1102)
T ss_pred -----CCCcEE----EECCHHH-HHHHHHHHHHhcCCCCEEEEEecCC-cEEEEEEEEECCCCCEEEecceEeee-----
Confidence 222322 1222111 110000 1123457999999953 67777776763 2221 122111
Q ss_pred eeeecCCCCceeeee---eCCHHH----HHHHHHHHHHhcC-ceeeEeEEee-CCCcEEEecCCc
Q 004147 234 VVMRNPDGKEVRYPV---LLTPNE----KQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVNGW 289 (771)
Q Consensus 234 ~vrrN~~gke~r~pv---~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs-~g~syVcDVNGw 289 (771)
+...|.|+....+ .|+++. +++|.++++++|. .++.+|++-+ +|++||+|||--
T Consensus 813 --~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~dg~~yviEiNpR 875 (1102)
T PLN02735 813 --QAGVHSGDSACSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPR 875 (1102)
T ss_pred --ccCccCCCccEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcCCCcEEEEEEeCC
Confidence 1223545443333 577544 5679999999985 5777999985 678999999943
No 70
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.52 E-value=1.7e-06 Score=96.80 Aligned_cols=189 Identities=15% Similarity=0.164 Sum_probs=106.2
Q ss_pred HHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecc
Q 004147 75 SYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVH 153 (771)
Q Consensus 75 ~y~~lr~p~~i-Ndl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~ 153 (771)
+.++..+..++ -+...-.+.+||..+-++|+++|||+|++..+... . +..+++. .++.|+|+||..
T Consensus 86 d~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~--~-------ea~~~~~----~~~~PvVVKp~~ 152 (426)
T PRK13789 86 DWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEY--S-------SSLSYLE----SEMLPIVIKADG 152 (426)
T ss_pred HHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCH--H-------HHHHHHH----hcCCCEEEEeCC
Confidence 44455554333 23345567889999999999999999998777431 0 1122222 246899999997
Q ss_pred cc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEEC--CceeE---EEeee
Q 004147 154 GD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVG--PEYAH---AEARK 227 (771)
Q Consensus 154 Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG--~~~vh---Ae~RK 227 (771)
+. -.++++...... ....++.+-+. +.|. ..+..+|.||||. |+-+=|.++. ..+.. +...|
T Consensus 153 ~~~gkGV~vv~~~ee---l~~a~~~~~~~-~~~g------~~~~~vlIEEfl~--G~E~Sv~~~~dg~~~~~lp~~~d~k 220 (426)
T PRK13789 153 LAAGKGVTVATEKKM---AKRALKEIFKD-KKFG------QSGNQVVIEEFME--GQEASIFAISDGDSYFLLPAAQDHK 220 (426)
T ss_pred CCCCCcEEEECCHHH---HHHHHHHHHhh-cccc------CCCCeEEEEECcC--CeEEEEEEEECCCEEEEccceEecc
Confidence 64 233333332211 11111111000 0000 1234789999997 4555554443 32221 11111
Q ss_pred CCCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---c---CceeeEeEEeeCCC-cEEEecCCc
Q 004147 228 SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---R---QAVCGFDLLRCEGR-SYVCDVNGW 289 (771)
Q Consensus 228 SP~~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~~af---g---q~VcGfDLLRs~g~-syVcDVNGw 289 (771)
...||+-.-|+.|=+.-.|.. ++++.. +|+.++.+++ | ..+..+|++-+.++ +||+|+|--
T Consensus 221 -~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g~~~vlE~n~R 294 (426)
T PRK13789 221 -RAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNCR 294 (426)
T ss_pred -cccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCCCEEEEEEecC
Confidence 123666666766666656765 466322 3445556555 4 45677898888655 999999954
No 71
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.37 E-value=1.5e-06 Score=106.93 Aligned_cols=196 Identities=17% Similarity=0.206 Sum_probs=118.7
Q ss_pred ccceeeccccCCCChHHH-----HHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 004147 56 ICDCLIAFYSSGYPLEKA-----ESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~ka-----i~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 129 (771)
.+|++++.++-..++.-| ...++..+. +.-.+.++..+++||....+.|+++|||+|++..+...
T Consensus 81 ~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~s~--------- 151 (1050)
T TIGR01369 81 RPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESEIAHSV--------- 151 (1050)
T ss_pred CCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCeeecCCH---------
Confidence 368888876533333222 224556664 55689999999999999999999999999999888542
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-cc--ccCcceEEeeccCC
Q 004147 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RV--RREGSYIYEEFMPT 206 (771)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~--r~~gsyIyEEFi~t 206 (771)
++.... ...+++|+|+||..|. .|.|+. .+.|... +..-.. .+ ...+.+|+||||+-
T Consensus 152 ---~e~~~~-~~~igyPvIVKP~~g~-----------gg~Gv~----iv~~~ee-L~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 152 ---EEALAA-AKEIGYPVIVRPAFTL-----------GGTGGG----IAYNREE-LKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred ---HHHHHH-HHHhCCCeEEECCCCC-----------CCCCeE----EECCHHH-HHHHHHHHHhcCCCCcEEEEEcccC
Confidence 222221 1245689999999875 233332 1222221 110000 11 12357899999963
Q ss_pred CCceeEEEEECC---cee--EEEeeeCCCCCCeeeecCCCCce--eeeee-CCHHH----HHHHHHHHHHhcCc-eeeEe
Q 004147 207 GGTDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEV--RYPVL-LTPNE----KQMAREVCIAFRQA-VCGFD 273 (771)
Q Consensus 207 ~G~DIKVytVG~---~~v--hAe~RKSP~~DG~vrrN~~gke~--r~pv~-Lt~eE----k~iA~ka~~afgq~-VcGfD 273 (771)
...+=+-++++ +.+ ..+.+.-| .| .|-|++ -.|.. |++++ +++|.++++++|.. +|.||
T Consensus 212 -~~Eiev~v~rd~~g~~~~~~~~e~~~p--~g-----vh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Ve 283 (1050)
T TIGR01369 212 -WKEIEYEVMRDSNDNCITVCNMENFDP--MG-----VHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQ 283 (1050)
T ss_pred -ceEEEEEEEEeCCCCEEEEeeceeccC--cc-----eecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEE
Confidence 13343333322 222 22334334 22 233332 23443 77654 46889999999984 78899
Q ss_pred EEee--CCCcEEEecCC
Q 004147 274 LLRC--EGRSYVCDVNG 288 (771)
Q Consensus 274 LLRs--~g~syVcDVNG 288 (771)
+..+ +|+.||+|||.
T Consensus 284 f~l~~~~g~~~viEiNP 300 (1050)
T TIGR01369 284 FALNPDSGRYYVIEVNP 300 (1050)
T ss_pred EEEECCCCcEEEEEeec
Confidence 9887 46789999993
No 72
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.33 E-value=4.4e-06 Score=104.10 Aligned_cols=189 Identities=18% Similarity=0.167 Sum_probs=109.7
Q ss_pred HHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCC-EEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 004147 73 AESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPR-YALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (771)
Q Consensus 73 ai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~-t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (771)
..+.++..+ +++-++.+...+++||....++|+++|||+|. +.++... ++.... -..+++|+|+|
T Consensus 90 ~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~------------dea~~~-a~~igyPvVVK 156 (1201)
T TIGR02712 90 FAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLSSL------------DEALEA-AKEIGYPVMLK 156 (1201)
T ss_pred HHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeecCCH------------HHHHHH-HHhcCCeEEEE
Confidence 355666777 46778999999999999999999999999865 5444321 122221 12356899999
Q ss_pred eccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECC---ceeEEEeee
Q 004147 151 PVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARK 227 (771)
Q Consensus 151 pv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~---~~vhAe~RK 227 (771)
|..|.. .+.++...+.- -....|+.+.+.+.. .+ .+..++.||||.. |+-+-|.++|+ .+++--.|.
T Consensus 157 P~~ggG-G~GV~iv~~~e-EL~~a~~~~~~~~~~------~f-~~~~vlVEefI~g-~~eveV~v~~Dg~g~vv~lg~rd 226 (1201)
T TIGR02712 157 STAGGG-GIGMQKCDSAA-ELAEAFETVKRLGES------FF-GDAGVFLERFVEN-ARHVEVQIFGDGKGKVVALGERD 226 (1201)
T ss_pred ECCCCC-CCCEEEECCHH-HHHHHHHHHHHHHHH------hc-CCCcEEEEecCCC-CEEEEEEEEECCCCeEEEeeEEE
Confidence 999861 22222222210 122223322110000 01 2345899999974 56677766653 344433332
Q ss_pred CCCCCCeee-ecCCCCceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC--CCcEEEecCCc
Q 004147 228 SPVVDGVVM-RNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE--GRSYVCDVNGW 289 (771)
Q Consensus 228 SP~~DG~vr-rN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~--g~syVcDVNGw 289 (771)
. .+. +|..--+..-...|++ +-.++|.++++++|.. ++.||++.+. +++||+|||.=
T Consensus 227 ~-----s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~~y~lEVNpR 291 (1201)
T TIGR02712 227 C-----SLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDEFYFLEVNTR 291 (1201)
T ss_pred e-----eeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCCEEEEEEECC
Confidence 1 111 1211111110112443 4566888999998865 6779999863 77999999963
No 73
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.29 E-value=3.4e-06 Score=88.82 Aligned_cols=192 Identities=19% Similarity=0.260 Sum_probs=120.7
Q ss_pred hcCCcccCCchhhhHhhhHHHHHHHHHhCC-CC--CCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc
Q 004147 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYG-IP--VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (771)
Q Consensus 79 lr~p~~iNdl~~q~~l~DR~~~~qiL~~~g-IP--~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge 155 (771)
.++....|. -+.||+.+|+.|.+.. +. +|.|...... + ....++.-. +-+.+||..|+
T Consensus 6 ~~~i~~~n~-----~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~--~-------~l~~~L~~y-----~~vylKP~~Gs 66 (262)
T PF14398_consen 6 QKGIPFFNP-----GFFDKWEVYKALSRDPELRPYLPETELLTSF--E-------DLREMLNKY-----KSVYLKPDNGS 66 (262)
T ss_pred cCCCEEeCC-----CCCCHHHHHHHHHcCCcchhhCCCceEcCCH--H-------HHHHHHHHC-----CEEEEEeCCCC
Confidence 345555665 2469999999999863 44 7888777541 0 122333322 35889999998
Q ss_pred CcceeEEeccCCCChHHHHhhhcCC-Cccccccccc-------ccccCcceEEeeccCC---CC--ceeEEEEEC--C--
Q 004147 156 DHSIMIYYPSSAGGGMKELFRKVGN-RSSEFHPDVR-------RVRREGSYIYEEFMPT---GG--TDVKVYTVG--P-- 218 (771)
Q Consensus 156 dHni~IYyp~~~GgG~~rLfrkign-~sS~~~~~~~-------~~r~~gsyIyEEFi~t---~G--~DIKVytVG--~-- 218 (771)
.+..|+.=...++|..--++.-+. ....|. +.. ..-....||+|+.|+- +| -|+||.+-= .
T Consensus 67 -~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~ 144 (262)
T PF14398_consen 67 -KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFS-SLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGK 144 (262)
T ss_pred -CCccEEEEEEeCCEEEEEEccCCceeEEEeC-CHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCC
Confidence 555555554444433211111111 000111 111 1235669999999975 55 899999982 2
Q ss_pred -ceeEEEeeeCCCCCCeeeecCCCCceeeeee-----------CCHHHHHHHHHHH----HHhcC--ceeeEeEEee-CC
Q 004147 219 -EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-----------LTPNEKQMAREVC----IAFRQ--AVCGFDLLRC-EG 279 (771)
Q Consensus 219 -~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~-----------Lt~eEk~iA~ka~----~afgq--~VcGfDLLRs-~g 279 (771)
.+....+|.++ .|.+-+|.++|+...++. +..+-+++|..+| +.||. .-.|+||--. +|
T Consensus 145 W~vtg~~~Rva~--~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g 222 (262)
T PF14398_consen 145 WQVTGIVARVAK--PGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNG 222 (262)
T ss_pred EEEEEEEEEEcC--CCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCC
Confidence 56789999998 899999999888755541 2223334444444 55664 6789999888 67
Q ss_pred CcEEEecCCccccc
Q 004147 280 RSYVCDVNGWSFVK 293 (771)
Q Consensus 280 ~syVcDVNGwSFVK 293 (771)
+..++|||.-+-..
T Consensus 223 ~iWliEvN~kP~~~ 236 (262)
T PF14398_consen 223 KIWLIEVNSKPGKF 236 (262)
T ss_pred CEEEEEEeCCCCcc
Confidence 78899999875543
No 74
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.23 E-value=1.7e-05 Score=98.09 Aligned_cols=204 Identities=17% Similarity=0.192 Sum_probs=118.7
Q ss_pred ccceeeccccCCCChHHHHH-----HHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 004147 56 ICDCLIAFYSSGYPLEKAES-----YATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~kai~-----y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 129 (771)
.+|++|+.++....+.-|.+ .++..+. +.-.+.++..+++||....+.|+++|||+|++..+...
T Consensus 82 ~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~~v~s~--------- 152 (1068)
T PRK12815 82 KPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESEIVTSV--------- 152 (1068)
T ss_pred CcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCceeeCCH---------
Confidence 46778875542223333331 3455664 44578999999999999999999999999999988642
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-cc--ccCcceEEeeccCC
Q 004147 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RV--RREGSYIYEEFMPT 206 (771)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~--r~~gsyIyEEFi~t 206 (771)
++.... -..+++|+|+||..|. .|.|+. + +.|... +..-.. .+ ...+.+|+||||+-
T Consensus 153 ---ee~~~~-~~~igyPvVVKP~~g~-----------gG~Gv~-i---v~~~eE-L~~a~~~~~~~s~~~~vLVEe~I~G 212 (1068)
T PRK12815 153 ---EEALAF-AEKIGFPIIVRPAYTL-----------GGTGGG-I---AENLEE-LEQLFKQGLQASPIHQCLLEESIAG 212 (1068)
T ss_pred ---HHHHHH-HHHcCCCEEEEECcCC-----------CCCceE-E---ECCHHH-HHHHHHHHHhcCCCCeEEEEEccCC
Confidence 122111 1235689999999875 222321 1 222111 110000 01 12357999999963
Q ss_pred CCceeEEEEECC---cee--EEEeeeCCCCCCeeeecCCCCcee--eee-eCCHH----HHHHHHHHHHHhcC-ceeeEe
Q 004147 207 GGTDVKVYTVGP---EYA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTPN----EKQMAREVCIAFRQ-AVCGFD 273 (771)
Q Consensus 207 ~G~DIKVytVG~---~~v--hAe~RKSP~~DG~vrrN~~gke~r--~pv-~Lt~e----Ek~iA~ka~~afgq-~VcGfD 273 (771)
...+=|-++.+ +.+ .++.+..| .| .|.|... .|. .|+++ -+++|.++++++|. .+|.||
T Consensus 213 -~~E~sv~v~rD~~g~~~~~~~~e~~~p--~g-----i~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~ve 284 (1068)
T PRK12815 213 -WKEIEYEVMRDRNGNCITVCNMENIDP--VG-----IHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQ 284 (1068)
T ss_pred -CeEEEEEEEEcCCCCEEEEEeceeccc--cc-----ccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEE
Confidence 13344444432 221 22223233 22 2223221 233 47765 36788999999998 478899
Q ss_pred EEee-C-CCcEEEecCCcccccccccc
Q 004147 274 LLRC-E-GRSYVCDVNGWSFVKNSYKY 298 (771)
Q Consensus 274 LLRs-~-g~syVcDVNGwSFVK~n~kY 298 (771)
+.-+ . |++||+||| +=+-++..+
T Consensus 285 f~l~~~~g~~~ViEIN--PR~~~s~~l 309 (1068)
T PRK12815 285 FALDPKSKQYYLIEVN--PRVSRSSAL 309 (1068)
T ss_pred EEEECCCCcEEEEEEe--cCcccchhh
Confidence 8876 3 569999999 333344444
No 75
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.17 E-value=1.3e-05 Score=91.59 Aligned_cols=200 Identities=16% Similarity=0.127 Sum_probs=111.1
Q ss_pred cceeeccccCCCCh-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCC-EEEEeccCCCcccccccccc
Q 004147 57 CDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPR-YALVNREVPYQELDYFIEEE 133 (771)
Q Consensus 57 cd~lIsf~s~GfpL-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~-t~~~~r~~p~~~~~~~~e~~ 133 (771)
+|+.|..... |+ ......++..+. +.-++..+-.+.+||..+-+.|+++|||+|. +..+ .+ +. +..
T Consensus 70 id~Vi~g~E~--~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~-~~-~~-------ea~ 138 (486)
T PRK05784 70 PDLVVIGPEE--PLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRYKVF-YD-VE-------EAA 138 (486)
T ss_pred CCEEEECCch--HHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccceEe-CC-HH-------HHH
Confidence 4555553333 33 223344555664 3458889999999999999999999999974 5444 33 10 112
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcc----cccc-------cc----ccc-ccCcc
Q 004147 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSS----EFHP-------DV----RRV-RREGS 197 (771)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS----~~~~-------~~----~~~-r~~gs 197 (771)
++++ .+ .|+|+||..+. .|-|+. + +.+... .+.. +. ..+ ..+..
T Consensus 139 ~~~~----~~-~PvVVKP~~~a-----------ggkGV~-i---v~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~ 198 (486)
T PRK05784 139 KFIE----YG-GSVAIKPARQA-----------GGKGVK-V---IADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPK 198 (486)
T ss_pred HHHh----hc-CCEEEeeCCCC-----------CCCCEE-E---ECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCe
Confidence 2222 12 49999999886 444553 2 222210 0000 00 011 13567
Q ss_pred eEEeeccCCCCceeEEEEECCceeE-EEeeeCC-CCCCeeeecCCCCceeee----ee-CCHHH----HHHHHHHHHHhc
Q 004147 198 YIYEEFMPTGGTDVKVYTVGPEYAH-AEARKSP-VVDGVVMRNPDGKEVRYP----VL-LTPNE----KQMAREVCIAFR 266 (771)
Q Consensus 198 yIyEEFi~t~G~DIKVytVG~~~vh-Ae~RKSP-~~DG~vrrN~~gke~r~p----v~-Lt~eE----k~iA~ka~~afg 266 (771)
+|.||||.-.=-.|=+++-|..+.. ...+.-| ..||+.--|+.|=+.=.| +. +++++ .+++.++..+++
T Consensus 199 VlIEEfL~G~E~SV~al~dG~~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~ 278 (486)
T PRK05784 199 ILVEEKVDGVEYTLQVLTDGETVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIY 278 (486)
T ss_pred EEEEEccCCeEEEEEEEECCCeEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999832123334443443321 1122111 236666666666444333 32 34432 345777777776
Q ss_pred Cc-------eeeEeEEee-CCCcEEEecC
Q 004147 267 QA-------VCGFDLLRC-EGRSYVCDVN 287 (771)
Q Consensus 267 q~-------VcGfDLLRs-~g~syVcDVN 287 (771)
.. ++-++++-+ .++|+|+|+|
T Consensus 279 ~~~g~~~~G~l~~elmlt~~~GP~vIE~n 307 (486)
T PRK05784 279 KETGERYVGVISGQMMLTELWGPTVIEYY 307 (486)
T ss_pred HhcCCCcEEEEEEEEEEecCCCcEEEEEe
Confidence 43 345688888 8999999999
No 76
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.82 E-value=0.00056 Score=75.73 Aligned_cols=175 Identities=18% Similarity=0.192 Sum_probs=99.7
Q ss_pred ccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEe
Q 004147 84 LVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163 (771)
Q Consensus 84 ~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYy 163 (771)
+.-+..+....+||....+.|+++|||+|++ +. + | ++ +..|+|+||..|.+ +-.++.
T Consensus 111 ~~gn~~~l~~e~dK~~~k~~L~~aGIp~p~~--~~-~-~----------~~--------i~~PvIVKp~~g~g-gkGv~i 167 (358)
T PRK13278 111 MFGNREILRWEADRDKERKLLEEAGIRIPRK--YE-S-P----------ED--------IDRPVIVKLPGAKG-GRGYFI 167 (358)
T ss_pred cCCCHHHHHHhcCHHHHHHHHHHcCCCCCCE--eC-C-H----------HH--------cCCCEEEEeCCCCC-CCCeEE
Confidence 3335567788889999999999999999996 21 1 1 11 23699999988763 344444
Q ss_pred ccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE---CCceeEEEeeeCCC-CCCeeee--
Q 004147 164 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV---GPEYAHAEARKSPV-VDGVVMR-- 237 (771)
Q Consensus 164 p~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytV---G~~~vhAe~RKSP~-~DG~vrr-- 237 (771)
..+... ....++.+-++. . +.....+|.||||.-.--.+=+|+. |.-...++.|+=-. .||.+|-
T Consensus 168 ~~s~~E-l~~~~~~l~~~~-~-------~~~~~~~iIEEfI~G~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p~ 238 (358)
T PRK13278 168 AKSPEE-FKEKIDKLIERG-L-------ITEVEEAIIQEYVVGVPYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRIPA 238 (358)
T ss_pred eCCHHH-HHHHHHHHHhcc-c-------cCCCCeEEEEecCCCcEEEEEEEEeccCCeEEEEeeceeeeecccceeeccc
Confidence 444311 122333221110 1 1135779999999732122334543 55455666555433 4666661
Q ss_pred c---CCCCceeee------eeCC----HHHHHHHHHHHHH----h-cCcee--eEeEEeeC-CCcEEEecCCcc
Q 004147 238 N---PDGKEVRYP------VLLT----PNEKQMAREVCIA----F-RQAVC--GFDLLRCE-GRSYVCDVNGWS 290 (771)
Q Consensus 238 N---~~gke~r~p------v~Lt----~eEk~iA~ka~~a----f-gq~Vc--GfDLLRs~-g~syVcDVNGwS 290 (771)
+ ..+.+-.++ +.+. ++-.+++.+++++ + +..+| .+|...+. +..||+|||+--
T Consensus 239 ~~~~~~~~~p~~v~~Gn~P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 239 KDQLELGIDPTYVVVGNIPVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred hhhhhcccCCceeEecceeccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 1 112222222 2222 4555667777776 5 54444 56677764 456999998754
No 77
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=97.54 E-value=0.00034 Score=76.35 Aligned_cols=147 Identities=26% Similarity=0.430 Sum_probs=101.0
Q ss_pred CCch-hhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEec
Q 004147 86 NELE-PQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYP 164 (771)
Q Consensus 86 Ndl~-~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp 164 (771)
|+-. ....+-+|.+.|..|...|.|.|.+.-+. -+. -| .||.|+||++|.
T Consensus 110 n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~~e----------------~~~-~g---ekt~IlKPv~Ga--------- 160 (389)
T COG2232 110 NEPEVKVVEASNKLKFYRKLEVLGMPEPSEKKIE----------------PLE-EG---EKTLILKPVSGA--------- 160 (389)
T ss_pred CCcHHHHHHHHHHHhhhhhhhhcCCCCChhhhhh----------------hhh-hc---ceeeEEeeccCC---------
Confidence 5555 66777789999999999999988764331 111 12 279999999995
Q ss_pred cCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCC---------CCceeEEEEECCceeEEEeeeCCCCCCee
Q 004147 165 SSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---------GGTDVKVYTVGPEYAHAEARKSPVVDGVV 235 (771)
Q Consensus 165 ~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t---------~G~DIKVytVG~~~vhAe~RKSP~~DG~v 235 (771)
| |. ++.+. ++.+. . -.-+|.||||+- +|.|....+|..+++. | +
T Consensus 161 ---G-G~---~el~~-----~~Ee~---~-~~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~QiI~----------~-~ 213 (389)
T COG2232 161 ---G-GL---VELVK-----FDEED---P-PPGFIFQEFIEGRPVSVSFISNGSDALTLAVNDQIID----------G-L 213 (389)
T ss_pred ---C-ce---eeecc-----ccccc---C-CcceehhhhcCCceeEEEEEecCcceEEEEEeeeeec----------c-c
Confidence 3 32 33321 22111 0 167899999972 4666666666655544 1 1
Q ss_pred eecCC-----CCceeeeeeCCHHHHHHHHHHHHHhcCc-eeeEeEEeeCCCcEEEecCC
Q 004147 236 MRNPD-----GKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNG 288 (771)
Q Consensus 236 rrN~~-----gke~r~pv~Lt~eEk~iA~ka~~afgq~-VcGfDLLRs~g~syVcDVNG 288 (771)
+.+-. |-=..+|+....|-+++|..+..-||+. --|||++-...+|||+|||=
T Consensus 214 ~~~~~~f~Y~GNlTP~~~~~~ee~e~la~elV~~lgL~GsnGVDfvl~d~gpyViEVNP 272 (389)
T COG2232 214 RGEYSQFVYKGNLTPFPYEEVEEAERLAEELVEELGLVGSNGVDFVLNDKGPYVIEVNP 272 (389)
T ss_pred ccccccceeccCcCCCcchhhHHHHHHHHHHHHHhccccccccceEeecCCcEEEEecC
Confidence 11211 4445677777777789999999999974 67999999989999999994
No 78
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.50 E-value=0.00048 Score=76.37 Aligned_cols=153 Identities=17% Similarity=0.160 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHH
Q 004147 95 HDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKEL 174 (771)
Q Consensus 95 ~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rL 174 (771)
+||+..|..|.++|||+|+++-. |. + +..|+|+||..|. |.-.+ =
T Consensus 125 ~dKk~~yk~L~~aGI~~Pk~~~~----p~-------------e-----Id~PVIVKp~~as------------G~~sr-G 169 (366)
T PRK13277 125 TGEKNYYWLLEKAGIPYPKLFKD----PE-------------E-----IDRPVIVKLPEAK------------RRLER-G 169 (366)
T ss_pred cCHHHHHHHHHHcCCCCceeecC----cc-------------c-----cCccEEEEECCCC------------Ccccc-C
Confidence 47889999999999999999873 21 2 2369999999997 10011 1
Q ss_pred hhhcCCCcccccccccc------c--ccCcceEEeeccCC--CCceeEEEEE--CC--ceeEEEeeeCCCCCCeeee---
Q 004147 175 FRKVGNRSSEFHPDVRR------V--RREGSYIYEEFMPT--GGTDVKVYTV--GP--EYAHAEARKSPVVDGVVMR--- 237 (771)
Q Consensus 175 frkign~sS~~~~~~~~------~--r~~gsyIyEEFi~t--~G~DIKVytV--G~--~~vhAe~RKSP~~DG~vrr--- 237 (771)
|.++.|.+. |...... + .....+++||||.- -+-| +|.. -+ +++..-.|---.+||.+|-
T Consensus 170 ~f~a~s~eE-l~~~a~~l~~~g~I~~~~~~~~iIQEyI~G~ey~~d--~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~ 246 (366)
T PRK13277 170 FFTASSYED-FYEKSEELIKAGVIDREDLKNARIEEYVIGAHFNFN--YFYSPIRDRLELLGIDRRIQSNLDGFVRLPAP 246 (366)
T ss_pred eEeeCCHHH-HHHHHHhhhhcCcccccccccceeEeccCCCEEEEE--EEEeccCCcEEEEEEeeccccccccccccChh
Confidence 112222211 1111111 1 12246789999964 4444 4543 34 4555555533336776662
Q ss_pred ----------cCCCCceeeeeeCC----HHHHHHHHHHHHHhcC-----ce--eeEeEEeeC-CCcEEEecC
Q 004147 238 ----------NPDGKEVRYPVLLT----PNEKQMAREVCIAFRQ-----AV--CGFDLLRCE-GRSYVCDVN 287 (771)
Q Consensus 238 ----------N~~gke~r~pv~Lt----~eEk~iA~ka~~afgq-----~V--cGfDLLRs~-g~syVcDVN 287 (771)
+.--|+ .|+.++ ++-.+++.+++++++. .+ ..+|...+. +..||.|||
T Consensus 247 ~ql~~~~~p~~vv~G~--~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~EIn 316 (366)
T PRK13277 247 QQLKLNEEPRYIEVGH--EPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVA 316 (366)
T ss_pred hhhhcccCCceEEEcC--ccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEEEc
Confidence 122222 233333 5567788888899873 22 245666654 678999999
No 79
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.46 E-value=0.00019 Score=81.45 Aligned_cols=196 Identities=17% Similarity=0.208 Sum_probs=126.1
Q ss_pred cceeeccccCCCCh--HHHHHHHHhcCCcccC--CchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 004147 57 CDCLIAFYSSGYPL--EKAESYATLRKPFLVN--ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (771)
Q Consensus 57 cd~lIsf~s~GfpL--~kai~y~~lr~p~~iN--dl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 132 (771)
+|+.++.|+ |-- ++..+-|...+ ++.. +.+....+.||...-++++++|||+|+.... +. ...
T Consensus 75 adai~pGyg--flsen~~fae~~~~~g-l~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~----~~------~~~ 141 (449)
T COG0439 75 ADAIHPGYG--FLSENAAFAEACAEAG-LTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDG----AV------ADN 141 (449)
T ss_pred CceEcccch--hhhCCHHHHHHHHHcC-CeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCC----Cc------CCH
Confidence 566666664 322 35566666777 4444 3456678999999999999999999998722 10 011
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccccc-------ccCcceEEeeccC
Q 004147 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-------RREGSYIYEEFMP 205 (771)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~-------r~~gsyIyEEFi~ 205 (771)
++.+.. -+.+++|+|+||..|- -|-|+ |+.+ |.+..... .... -.++.++.|||+.
T Consensus 142 ee~~~~-a~~iGyPVivKa~~Gg-----------Gg~G~-r~v~---~~~el~~a-~~~~~~ea~~~fg~~~v~iEk~i~ 204 (449)
T COG0439 142 EEALAI-AEEIGYPVIVKAAAGG-----------GGRGM-RVVR---NEEELEAA-FEAARGEAEAAFGNPRVYLEKFIE 204 (449)
T ss_pred HHHHHH-HHHcCCCEEEEECCCC-----------CcccE-EEEC---CHHHHHHH-HHHHHHHHHHhcCCCcEEeeeecc
Confidence 333332 2345699999999986 33354 3544 33333331 1111 1467799999998
Q ss_pred CCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHH----HHHHHHHHhcCceee-EeEEee
Q 004147 206 TGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC 277 (771)
Q Consensus 206 t~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~----iA~ka~~afgq~VcG-fDLLRs 277 (771)
. -+-|=|-+.|+ .++|.-.|-.. .=||+-.=.|..-...++++.+. .|.+++++.|-.-|| |..|-.
T Consensus 205 ~-~rhievqv~gD~~g~~i~l~eRdcs----iqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~ 279 (449)
T COG0439 205 G-PRHIEVQVLGDGHGNVIHLGERDCS----IQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYD 279 (449)
T ss_pred C-CceEEEEEEEcCcccEEEEEeccCC----CcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEe
Confidence 7 34455556665 45788888632 24566665666645556665554 467788887777776 888888
Q ss_pred -CCCcEEEecC
Q 004147 278 -EGRSYVCDVN 287 (771)
Q Consensus 278 -~g~syVcDVN 287 (771)
+|++|++|+|
T Consensus 280 ~~~~~yfiEmN 290 (449)
T COG0439 280 SNGEFYFIEMN 290 (449)
T ss_pred CCCCEEEEEEe
Confidence 5999999999
No 80
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=97.44 E-value=4.4e-05 Score=78.40 Aligned_cols=165 Identities=21% Similarity=0.316 Sum_probs=94.3
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHh
Q 004147 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (771)
Q Consensus 96 DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (771)
||..+.+++++.|||+|+....--+ ..++.+.+ -+.+++|+++||..|- -|-|+ +++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~----------~~eea~~~-a~~iGyPVliKas~gg-----------GG~gm-~iv 57 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPIS----------SVEEALEF-AEEIGYPVLIKASAGG-----------GGRGM-RIV 57 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBS----------SHHHHHHH-HHHH-SSEEEEETTSS-----------TTTSE-EEE
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCC----------CHHHHHHH-HHhcCCceEEeecccc-----------ccccc-ccc
Confidence 7999999999999999988766211 12344432 2346799999999875 22233 233
Q ss_pred hhcCCCcccccccccccc---cCcceEEeeccCC-CCceeEEEEECC-ceeEEEeeeCCCCCCeeeecCCCC--ceeeee
Q 004147 176 RKVGNRSSEFHPDVRRVR---REGSYIYEEFMPT-GGTDVKVYTVGP-EYAHAEARKSPVVDGVVMRNPDGK--EVRYPV 248 (771)
Q Consensus 176 rkign~sS~~~~~~~~~r---~~gsyIyEEFi~t-~G~DIKVytVG~-~~vhAe~RKSP~~DG~vrrN~~gk--e~r~pv 248 (771)
.....-.+.+........ .++.+++|+|+.. .--+|-|..=|. +++|.-.|..- ..+ -+|+ ++.=+.
T Consensus 58 ~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~-----~~~-hs~dsi~~~P~~ 131 (211)
T PF02786_consen 58 HNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECS-----EQR-HSQDSIEEAPAQ 131 (211)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEE-----EEE-TTEEEEEEES-S
T ss_pred cchhhhhhhhhhccccCccccccceEEEeeehhhhhhhhhhhhhccccceeeeeeeccc-----ccc-ccccceeEeecc
Confidence 322111111111000000 3788999999986 434444333222 45666666552 223 2233 334345
Q ss_pred eCCHHHH----HHHHHHHHHhcC-ceeeEeEEee--CCCcEEEecCCc
Q 004147 249 LLTPNEK----QMAREVCIAFRQ-AVCGFDLLRC--EGRSYVCDVNGW 289 (771)
Q Consensus 249 ~Lt~eEk----~iA~ka~~afgq-~VcGfDLLRs--~g~syVcDVNGw 289 (771)
.||+++. ++|.++|+++|. .+|-|-++-. ++..||+|||=.
T Consensus 132 ~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 132 TLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp SS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred ccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 7888665 478999999986 4788899998 688999999954
No 81
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.00064 Score=73.97 Aligned_cols=221 Identities=20% Similarity=0.284 Sum_probs=139.4
Q ss_pred EeecCCccCChhHH-------------HHHHHHhhcCCeEEEEeCccccccCCCCCCCccceeeccccCCCChHHHHHHH
Q 004147 11 VCVMEKKVFSAPMG-------------QILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYA 77 (771)
Q Consensus 11 vCam~~Ka~SkPm~-------------~IL~rl~~~~~f~~iiF~d~~IL~~~ve~WP~cd~lIsf~s~GfpL~kai~y~ 77 (771)
|.|.|+=+....|| +-|..+++...+|.||-.=+-| ..|.|+-+=..||
T Consensus 38 ViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI---------~td~L~elE~~G~--------- 99 (394)
T COG0027 38 VIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAI---------ATDALVELEEEGY--------- 99 (394)
T ss_pred EEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhh---------hHHHHHHHHhCCc---------
Confidence 67788888777776 5678888888899888655444 3456666666664
Q ss_pred HhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccC
Q 004147 78 TLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD 156 (771)
Q Consensus 78 ~lr~p~~iNdl~~q~~l~DR~~~~qiL-~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ged 156 (771)
.+|-...+-++..||-..-++. ++.|+||-+|-|++.. +++.. .-+.+++|.|+||+-++
T Consensus 100 -----~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~------------~e~~~-a~~~iGfPcvvKPvMSS- 160 (394)
T COG0027 100 -----TVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSL------------EELRA-AVEKIGFPCVVKPVMSS- 160 (394)
T ss_pred -----eEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccH------------HHHHH-HHHHcCCCeeccccccc-
Confidence 2333333334444533222222 2349999999999653 23332 22346699999999988
Q ss_pred cceeEEeccCCCChHHHHhhhcCCCcccccccccccc-cCcceEEeeccCCCC--ceeEEEEECCc--eeEEEeeeCCCC
Q 004147 157 HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGG--TDVKVYTVGPE--YAHAEARKSPVV 231 (771)
Q Consensus 157 Hni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-~~gsyIyEEFi~t~G--~DIKVytVG~~--~vhAe~RKSP~~ 231 (771)
.|-|. -+.++..+-.+.++-....-| ..+..|+|+||+-+- |=+-|=.+++. ||+-.--+-+
T Consensus 161 ----------SGkGq-svv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc~PIGHrq~-- 227 (394)
T COG0027 161 ----------SGKGQ-SVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKFDFEITLLTVRAVDGTGSFCAPIGHRQE-- 227 (394)
T ss_pred ----------CCCCc-eeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecceEEEEEEEEEEecCCCCcCCCcccccC--
Confidence 78775 477776655554442111124 467799999998622 33333334443 4533222221
Q ss_pred CCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhc-CceeeEeEEeeCCCcEEEecC
Q 004147 232 DGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFR-QAVCGFDLLRCEGRSYVCDVN 287 (771)
Q Consensus 232 DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~~afg-q~VcGfDLLRs~g~syVcDVN 287 (771)
||+. -|.-.|-.+|+. -+.||.+|+.|+| ..+-||.|.-+.+.-|.-||-
T Consensus 228 dgdY------~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~gDeV~FsEVS 282 (394)
T COG0027 228 DGDY------RESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVKGDEVIFSEVS 282 (394)
T ss_pred CCCh------hcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEeCCEEEEeecC
Confidence 4444 567788899974 4668888888886 568999998887777776663
No 82
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=96.83 E-value=0.0042 Score=62.36 Aligned_cols=151 Identities=23% Similarity=0.337 Sum_probs=77.3
Q ss_pred HHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcc
Q 004147 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSS 183 (771)
Q Consensus 104 L~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS 183 (771)
|++.|||+|++..+... +-+.--...++.|+|.|+..+- ..|-|.. +.+.. +
T Consensus 1 l~~~gip~~~~~~i~~~-------------~~l~~a~~~iG~P~vlK~~~~G----------YDGkGq~-~i~~~----~ 52 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSL-------------EDLEEAAESIGFPAVLKTRRGG----------YDGKGQF-VIRSE----E 52 (172)
T ss_dssp HHHTT--B-EEEEESSH-------------HHHHHHHHHHTSSEEEEESSSS----------CTTTTEE-EESSG----G
T ss_pred CcccCCCCCCeEEECCH-------------HHHHHHHHHcCCCEEEEccCcC----------cCCCccE-EECCH----H
Confidence 78999999999999753 1222123346789999976653 1344432 22211 1
Q ss_pred cccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHH
Q 004147 184 EFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAR 259 (771)
Q Consensus 184 ~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ 259 (771)
....-...+ ..+.+|.|+||+- ...|=|.++-+. .-+.+-=|++ ..+.+|-.-...-.|..+++ +-++||.
T Consensus 53 dl~~a~~~~-~~~~~ilE~~v~f-~~EiSvivaR~~--~G~~~~yp~~-en~~~~~il~~s~~Pa~i~~~~~~~a~~ia~ 127 (172)
T PF02222_consen 53 DLEKAWQEL-GGGPCILEEFVPF-DREISVIVARDQ--DGEIRFYPPV-ENVHRDGILHESIAPARISDEVEEEAKEIAR 127 (172)
T ss_dssp GHHHHHHHT-TTSCEEEEE---E-SEEEEEEEEEET--TSEEEEEEEE-EEEEETTEEEEEEESCSS-HHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCcEEEEeccCC-cEEEEEEEEEcC--CCCEEEEcCc-eEEEECCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 111000012 6788999999984 344444443211 1112222211 01122222234455666775 5567888
Q ss_pred HHHHHhcC-ceeeEeEEeeCCC--cEEEecC
Q 004147 260 EVCIAFRQ-AVCGFDLLRCEGR--SYVCDVN 287 (771)
Q Consensus 260 ka~~afgq-~VcGfDLLRs~g~--syVcDVN 287 (771)
+|+.+++. .|-+|.+.-+.++ -||-|+-
T Consensus 128 ~i~~~l~~vGv~~VE~Fv~~~g~~v~vNEia 158 (172)
T PF02222_consen 128 KIAEALDYVGVLAVEFFVTKDGDEVLVNEIA 158 (172)
T ss_dssp HHHHHHTSSEEEEEEEEEETTSTEEEEEEEE
T ss_pred HHHHHcCcEEEEEEEEEEecCCCEEEEEecc
Confidence 88888864 5778888888554 5788774
No 83
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.0033 Score=69.24 Aligned_cols=198 Identities=20% Similarity=0.252 Sum_probs=133.4
Q ss_pred HhcCCcccCCchhhhHhhhHHHHHHHHHhC-------CCCC-CCEEEEeccCCCccccccccccceeeecCeeccCcEEE
Q 004147 78 TLRKPFLVNELEPQHLLHDRRKVYEQLEKY-------GIPV-PRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVE 149 (771)
Q Consensus 78 ~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~-------gIP~-P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVe 149 (771)
..-+.+.||++.+.+-+-||--+...|.+. .+|+ |.|.+-++ ...+..- .+|+|+
T Consensus 182 qyagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnH-------------K~m~s~~----tyPvVV 244 (488)
T KOG3895|consen 182 QYAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNH-------------KEMLSQP----TYPVVV 244 (488)
T ss_pred HhcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCCc-------------hhhccCC----CCcEEE
Confidence 345688999999999999988777666652 2443 22222221 1222211 279999
Q ss_pred eeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEEEeeeC
Q 004147 150 KPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS 228 (771)
Q Consensus 150 Kpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKS 228 (771)
|--.|- +|-|-. ||.|....-|-+. .+. .+.---.|-||.. --||||=-+|.+|-+=|.| |
T Consensus 245 kvghah-----------sGmGKi----KV~Nh~dfqDi~s-vval~~Tyat~epFiDa-KYDiriQKIG~nYKaymRt-s 306 (488)
T KOG3895|consen 245 KVGHAH-----------SGMGKI----KVENHEDFQDIAS-VVALTKTYATAEPFIDA-KYDIRIQKIGHNYKAYMRT-S 306 (488)
T ss_pred Eecccc-----------ccccee----eecchhhhHhHHH-HHHHHhhhhhccccccc-cceeehhhhhhhHHHHhhh-h
Confidence 998886 666643 4555554443211 122 2222346778876 4699999999999776655 5
Q ss_pred CCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhc-CceeeEeEEee-CCCcEEEecCCccccccccccH----HHH
Q 004147 229 PVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFR-QAVCGFDLLRC-EGRSYVCDVNGWSFVKNSYKYY----DDA 302 (771)
Q Consensus 229 P~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~afg-q~VcGfDLLRs-~g~syVcDVNGwSFVK~n~kYY----ddc 302 (771)
+.|.|.+|+ |-.+-+.|-.++..|...--++..|| +.||.||.|-+ .|+-||+|||+-| .-|+ ++=
T Consensus 307 --IsgnWKtNt-GSamLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d~s-----mpliGeh~eeD 378 (488)
T KOG3895|consen 307 --ISGNWKTNT-GSAMLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSS-----MPLIGEHQEED 378 (488)
T ss_pred --hccCcccCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecccc-----ccccccchhHH
Confidence 499999997 56667788889999988888888886 79999999999 6779999999854 3333 222
Q ss_pred HHHHHHHHHHhhCCCC
Q 004147 303 ACVLRKMFLEAKAPHL 318 (771)
Q Consensus 303 a~iL~~~~l~~~~~~~ 318 (771)
.+.+..++...+++..
T Consensus 379 rql~~~Lvvskmaq~l 394 (488)
T KOG3895|consen 379 RQLISELVVSKMAQLL 394 (488)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 3455555555555544
No 84
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=96.48 E-value=0.013 Score=65.78 Aligned_cols=193 Identities=20% Similarity=0.237 Sum_probs=110.8
Q ss_pred cceeeccccCCCChHHHHHHHHh-----cC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccc
Q 004147 57 CDCLIAFYSSGYPLEKAESYATL-----RK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFI 130 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~l-----r~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~ 130 (771)
.|.++..++-..+|.-+++--+. .+ +.+.++.++..+..||.+..+.+.++|+|+| +.+++.- .
T Consensus 71 ~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~---------~ 140 (400)
T COG0458 71 PDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSV---------E 140 (400)
T ss_pred cceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-ccccccH---------H
Confidence 49999999988888666664332 13 4688999999999999999999999999999 3333221 1
Q ss_pred cccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccc--cCcceEEeeccCC-
Q 004147 131 EEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVR--REGSYIYEEFMPT- 206 (771)
Q Consensus 131 e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r--~~gsyIyEEFi~t- 206 (771)
+.++.+. .++.|+|+||..|. -|.|+. .++. + .++..-.. .++ .-...+.||+|.-
T Consensus 141 e~~~~~~----~ig~PvIVrP~~~l-----------GG~G~~-i~~n---~-eel~~~~~~~l~~s~~~~vl~eesi~G~ 200 (400)
T COG0458 141 EADEIAD----EIGYPVIVKPSFGL-----------GGSGGG-IAYN---E-EELEEIIEEGLRASPVEEVLIEESIIGW 200 (400)
T ss_pred HHhhhHh----hcCCCEEEecCcCC-----------CCCcee-EEeC---H-HHHHHHHHhccccCccccceeeeeecCc
Confidence 2223333 34589999999986 332443 3321 1 11110000 111 2234567777764
Q ss_pred ---------CCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceee---eeeCCHHHHH----HHHHHHHHhcCc-e
Q 004147 207 ---------GGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRY---PVLLTPNEKQ----MAREVCIAFRQA-V 269 (771)
Q Consensus 207 ---------~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~---pv~Lt~eEk~----iA~ka~~afgq~-V 269 (771)
++.|-.++ +-.|.+-=| .| .|-+...+ .-.||..|-+ .|.++.+++|.. =
T Consensus 201 ke~e~ev~rd~~~n~iv------vc~men~dp--~g-----vhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~ 267 (400)
T COG0458 201 KEFEYEVVRDGKDNCIV------VCNMENLDP--MG-----VHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGG 267 (400)
T ss_pred eEEEEEEEEeCCCCEEE------EEeCCcccc--cc-----ccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCC
Confidence 22222222 223344333 22 22232222 1245655544 455888888876 2
Q ss_pred eeEeEEeeC--CCcEEEecC-Ccccc
Q 004147 270 CGFDLLRCE--GRSYVCDVN-GWSFV 292 (771)
Q Consensus 270 cGfDLLRs~--g~syVcDVN-GwSFV 292 (771)
|-|+.--.. +..||+||| .+|=.
T Consensus 268 ~niQ~av~~~~~~~~viEvNpRvSrs 293 (400)
T COG0458 268 CNIQFAVDPGGGELYVIEINPRVSRS 293 (400)
T ss_pred CceeEEEcCCCceEEEEEecCCcCcc
Confidence 445554443 357999999 66644
No 85
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.093 Score=58.69 Aligned_cols=204 Identities=19% Similarity=0.237 Sum_probs=118.7
Q ss_pred eccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecC
Q 004147 61 IAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHG 140 (771)
Q Consensus 61 Isf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g 140 (771)
|+|=....|. .|++++... ..+-=+.+...+.+||+.-=+.|++.|||+|.+..+.+. +|... -.
T Consensus 66 iT~EfE~V~~-~aL~~l~~~-~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~------------~el~~-~~ 130 (375)
T COG0026 66 ITYEFENVPA-EALEKLAAS-VKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSA------------EELDA-AA 130 (375)
T ss_pred EEEeeccCCH-HHHHHHHhh-cCcCCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCH------------HHHHH-HH
Confidence 3444444554 566666655 445556788889999999999999999999999999753 12221 22
Q ss_pred eeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCce
Q 004147 141 NRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEY 220 (771)
Q Consensus 141 ~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~ 220 (771)
..|+.|+|+|.--|- -.|-|.. .++......+... ..-..+..|.|||++=. .-|-|.++ +-
T Consensus 131 ~~~g~p~VlKtr~gG----------YDGkGQ~-~i~~~~~~~~~~~----~~~~~~~~vlE~fV~F~-~EiSvi~a--R~ 192 (375)
T COG0026 131 ADLGFPAVLKTRRGG----------YDGKGQW-RIRSDADLELRAA----GLAEGGVPVLEEFVPFE-REISVIVA--RS 192 (375)
T ss_pred HHcCCceEEEecccc----------ccCCCeE-EeeCcccchhhHh----hhhccCceeEEeecccc-eEEEEEEE--Ec
Confidence 345689999999873 1355543 3332221111111 11133444999999863 33444444 21
Q ss_pred eEEEeeeCCCCCCeeeecCCCCcee-e---eeeCC----HHHHHHHHHHHHHhcC-ceeeEeEEeeCCC-cEEEecCCcc
Q 004147 221 AHAEARKSPVVDGVVMRNPDGKEVR-Y---PVLLT----PNEKQMAREVCIAFRQ-AVCGFDLLRCEGR-SYVCDVNGWS 290 (771)
Q Consensus 221 vhAe~RKSP~~DG~vrrN~~gke~r-~---pv~Lt----~eEk~iA~ka~~afgq-~VcGfDLLRs~g~-syVcDVNGwS 290 (771)
.-.+.+-=|+. -|.|..++= + |..++ .+-++||.+++..++. .|-||.+.-..+| -+|-|.- +
T Consensus 193 ~~G~~~~yP~~-----eN~h~~gIl~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~dg~llvNEiA--P 265 (375)
T COG0026 193 NDGEVAFYPVA-----ENVHRNGILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPDGELLVNEIA--P 265 (375)
T ss_pred CCCCEEEeccc-----ceeeecCEEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECCCcEEEeecc--C
Confidence 22223333322 366655542 2 22344 4567788888888864 5777888888774 4454432 4
Q ss_pred ccccccccHHHHHH
Q 004147 291 FVKNSYKYYDDAAC 304 (771)
Q Consensus 291 FVK~n~kYYddca~ 304 (771)
=|-||-+|=-+.+.
T Consensus 266 RvHNSGH~T~~gc~ 279 (375)
T COG0026 266 RVHNSGHWTIDGCE 279 (375)
T ss_pred CCCCccccchhhcc
Confidence 44555555544443
No 86
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=95.84 E-value=0.39 Score=50.66 Aligned_cols=178 Identities=20% Similarity=0.232 Sum_probs=100.6
Q ss_pred hhHhhhHHHHHHHHHhCC--CCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCC
Q 004147 91 QHLLHDRRKVYEQLEKYG--IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAG 168 (771)
Q Consensus 91 q~~l~DR~~~~qiL~~~g--IP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~G 168 (771)
-..+-||..|-..+++.+ ..+|.++-+-.+ + + +++-..+..+||+||..|+. .+.|+.-++..
T Consensus 15 ~~~~~DK~~VR~yv~~~~g~~~l~pll~v~~~-~-----------~--~i~~~~Lp~~fViK~nhgsg-~~~i~~dk~~~ 79 (239)
T PF14305_consen 15 FTKLADKYAVREYVEEKIGEEYLPPLLGVYDN-P-----------D--DIDFDSLPDKFVIKPNHGSG-SNIIVRDKSKL 79 (239)
T ss_pred ceecchHHHHHHHHHHhCCCceECceeecCCC-h-----------h--hhhhhcCCCCEEEEEecCCC-cEEEEeCCccc
Confidence 346779999999999885 455555555432 1 1 23333466899999999985 44444544332
Q ss_pred C--hHHHHhhhcCC-Ccccccccccccc-cCcceEEeeccCC-CC---ceeEEEEECCc--eeEEEeeeCCC-----CCC
Q 004147 169 G--GMKELFRKVGN-RSSEFHPDVRRVR-REGSYIYEEFMPT-GG---TDVKVYTVGPE--YAHAEARKSPV-----VDG 233 (771)
Q Consensus 169 g--G~~rLfrkign-~sS~~~~~~~~~r-~~gsyIyEEFi~t-~G---~DIKVytVG~~--~vhAe~RKSP~-----~DG 233 (771)
- -.++.+++--+ .-.....+- ..+ -.--.|.||++.. .| .|.|+|+.+++ ++.......+. .|.
T Consensus 80 d~~~~~~~~~~wl~~~~~~~~~E~-~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~~~~~~~yd~ 158 (239)
T PF14305_consen 80 DIEEAKKKLNRWLKKDYYYQSREW-HYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFGNHKRNFYDR 158 (239)
T ss_pred CHHHHHHHHHHHhhhccccccccc-cCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCCCeEEEEECc
Confidence 1 01111111111 111111111 111 2345899999998 66 79999999985 55554442210 111
Q ss_pred eeee-----cC-CCCceeeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEecC
Q 004147 234 VVMR-----NP-DGKEVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVN 287 (771)
Q Consensus 234 ~vrr-----N~-~gke~r~pv~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syVcDVN 287 (771)
+|.+ +. .+..+..|-.| ++..++|.++|+-|. +|=||+..++|+.|.-|.=
T Consensus 159 dw~~l~~~~~~~~~~~~~kP~~l-~emi~iA~~Ls~~f~--fvRVDlY~~~~~iyFGElT 215 (239)
T PF14305_consen 159 DWNRLPFRSDYPPDEDIPKPKNL-EEMIEIAEKLSKGFP--FVRVDLYNVDGKIYFGELT 215 (239)
T ss_pred ccCCCccccCCCCCCCCCCChhH-HHHHHHHHHHccCCC--EEEEEEEEeCCcEEEEeee
Confidence 1111 00 12222223333 355667777777655 7899999999999999974
No 87
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=95.55 E-value=0.08 Score=54.52 Aligned_cols=164 Identities=20% Similarity=0.255 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcE-EEeeccc-cCcceeEEeccCC-CChHH
Q 004147 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPF-VEKPVHG-DDHSIMIYYPSSA-GGGMK 172 (771)
Q Consensus 96 DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPf-VeKpv~G-edHni~IYyp~~~-GgG~~ 172 (771)
+|..+=++++++||||+++.....- .+...+|+-. ..|. |+|+-.- ...++.|.-.... -...+
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~---------~~A~~~l~~~----~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~ 68 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDY---------EEALEYLEEQ----GYPYVVIKADGLAAGKGVVIADDREEALEALR 68 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSH---------HHHHHHHHHH----SSSEEEEEESSSCTTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCH---------HHHHHHHHhc----CCCceEEccCCCCCCCEEEEeCCHHHHHHHHH
Confidence 5778889999999999987777531 1234455423 3577 9998432 2244444422211 11122
Q ss_pred HHhhhcCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEEE-----eeeCCCCCCeeeecCCCCceee
Q 004147 173 ELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHAE-----ARKSPVVDGVVMRNPDGKEVRY 246 (771)
Q Consensus 173 rLfrkign~sS~~~~~~~~~r-~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe-----~RKSP~~DG~vrrN~~gke~r~ 246 (771)
++|.. . .+. .+...|.|||+.-.=--+=++|=|..++.-- .|-- ||+-=-|+-|=+.=.
T Consensus 69 ~~~~~-----~-------~fg~~~~~vvIEE~l~G~E~S~~a~~dG~~~~~lp~aqD~Kr~~---dgd~GpnTGGMGa~s 133 (194)
T PF01071_consen 69 EIFVD-----R-------KFGDAGSKVVIEEFLEGEEVSLFALTDGKNFVPLPPAQDHKRLF---DGDTGPNTGGMGAYS 133 (194)
T ss_dssp HHHTS-----S-------TTCCCGSSEEEEE---SEEEEEEEEEESSEEEEEEEBEEEEEEE---TTTEEEEESESEEEE
T ss_pred Hhccc-----c-------ccCCCCCcEEEEeccCCeEEEEEEEEcCCeEEECcchhcccccc---CCCCCCCCCCcccee
Confidence 22220 0 111 4567899999974334455677777765322 2444 888888998877666
Q ss_pred eeeC-CHHHH-----HHHHHHHHHh---cCceee---EeEEeeCCCcEEEecC
Q 004147 247 PVLL-TPNEK-----QMAREVCIAF---RQAVCG---FDLLRCEGRSYVCDVN 287 (771)
Q Consensus 247 pv~L-t~eEk-----~iA~ka~~af---gq~VcG---fDLLRs~g~syVcDVN 287 (771)
|+.. |+++. .|...+.+++ |..++| +.++-+.++|+|+|-|
T Consensus 134 p~p~~~~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~Gp~vlEfN 186 (194)
T PF01071_consen 134 PVPFITDELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTEDGPKVLEFN 186 (194)
T ss_dssp STTTS-HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETTEEEEEEEE
T ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCCCcEEEEEe
Confidence 7755 55432 2334444444 555666 4777788999999998
No 88
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=93.68 E-value=0.16 Score=55.57 Aligned_cols=159 Identities=23% Similarity=0.371 Sum_probs=92.8
Q ss_pred HhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc-CcceeEEeccCCCChH
Q 004147 93 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGM 171 (771)
Q Consensus 93 ~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~ 171 (771)
-+-.|=.-|.+-.+.|+|.|+|+.++.. +...+-.+..|+|.||-.|- .|-+ |-
T Consensus 111 wlceKPllY~ra~elgl~~P~Ty~v~S~---------------~d~~~~el~FPvILKP~mgg~~~~~----------ar 165 (415)
T COG3919 111 WLCEKPLLYNRAEELGLPYPKTYLVNSE---------------IDTLVDELTFPVILKPGMGGSVHFE----------AR 165 (415)
T ss_pred HHhhCcHHHHHHHHhCCCCcceEEecch---------------hhhhhhheeeeEEecCCCCCcceee----------hh
Confidence 3445667889999999999999999853 11223345689999996652 2211 11
Q ss_pred HHHhhhcCCCccccccccc-ccc--cCcceEEeeccCCCCceeEEEEE----CCc---eeEEEeeeCCCCCCeeeecCCC
Q 004147 172 KELFRKVGNRSSEFHPDVR-RVR--REGSYIYEEFMPTGGTDVKVYTV----GPE---YAHAEARKSPVVDGVVMRNPDG 241 (771)
Q Consensus 172 ~rLfrkign~sS~~~~~~~-~~r--~~gsyIyEEFi~t~G~DIKVytV----G~~---~vhAe~RKSP~~DG~vrrN~~g 241 (771)
.+.|+ +.++. ++..-.+ +.. --.+.|+||||+-.|+.-++|.- |-. +.+--+|+=|+ | |
T Consensus 166 aKa~~-a~d~e-e~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rqyPv-d--f------ 234 (415)
T COG3919 166 AKAFT-AADNE-EMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQYPV-D--F------ 234 (415)
T ss_pred hheee-ccCHH-HHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhcCCc-c--c------
Confidence 22333 11110 0000000 001 23457999999999998888641 322 33334566774 3 2
Q ss_pred CceeeeeeCCH--HHHHHHHHHHHHhc-CceeeEeEEee-CCCcE-EEecC
Q 004147 242 KEVRYPVLLTP--NEKQMAREVCIAFR-QAVCGFDLLRC-EGRSY-VCDVN 287 (771)
Q Consensus 242 ke~r~pv~Lt~--eEk~iA~ka~~afg-q~VcGfDLLRs-~g~sy-VcDVN 287 (771)
|-..+.|++-+ +--+-|+++-...+ -.+.-||+=+. .+||| ++|||
T Consensus 235 gytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs~KlldvN 285 (415)
T COG3919 235 GYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKLLDVN 285 (415)
T ss_pred ccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeEEeec
Confidence 22335556555 33344555554444 34677899887 78999 99999
No 89
>KOG3672 consensus Histidine acid phosphatase [General function prediction only]
Probab=92.33 E-value=0.086 Score=59.15 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=41.7
Q ss_pred HHHHHhc--CCCCCCchhhh--hhcccccceEeecCCchhHhhHHHHHhhhhcccCCCCcceeeeEecCCccc
Q 004147 496 EIAYWWG--SHSEGTGLLRL--HSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSML 564 (771)
Q Consensus 496 ~LG~~fR--yp~~~~gLlrL--hst~rhDlKIysSdEgRVq~TAaaFakg~L~legeltPIlv~~V~kd~~lL 564 (771)
.+|..|| |- .-+|.+ |.---.|+-++|+--+|.-.||-||-=+||--. ...|| .||-...++
T Consensus 179 ~~G~~~r~~Y~---k~~lk~~pN~~sv~~lyv~TT~y~RT~QSaLA~lf~~lp~~-~w~~i---~iR~s~s~~ 244 (487)
T KOG3672|consen 179 RLGKYFRHRYE---KTKLKADPNQRSVADLYVVTTKYNRTVQSALAFLFLYLPRT-FWAPI---QIRASNSSY 244 (487)
T ss_pred hhhHHHHHHHh---hccccCCccccccceeEEEeccccHHHHHHHHHHHHhcchh-hhhee---eeecCcccc
Confidence 5788898 63 122332 333445777999999999999999988888754 46666 456444443
No 90
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=91.02 E-value=0.48 Score=53.97 Aligned_cols=211 Identities=18% Similarity=0.269 Sum_probs=122.1
Q ss_pred HHHHHHhhcCCeEEEEeCccccccCCCCCCCccceeeccccCCCCh---HHHHHHHHhcCCcccCCchhhhHhhhHHHHH
Q 004147 25 QILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL---EKAESYATLRKPFLVNELEPQHLLHDRRKVY 101 (771)
Q Consensus 25 ~IL~rl~~~~~f~~iiF~d~~IL~~~ve~WP~cd~lIsf~s~GfpL---~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~ 101 (771)
+=|.++.....+|++|-|-+.-|-..| +|. |-..|+|. .|+-+..+ ++|..+=
T Consensus 53 ~~lv~fA~~~~idl~vVGPE~pL~~Gv-----vD~---l~~~Gi~vFGPsk~AA~lE----------------~SK~faK 108 (428)
T COG0151 53 EALVAFAKEKNVDLVVVGPEAPLVAGV-----VDA---LRAAGIPVFGPTKAAAQLE----------------GSKAFAK 108 (428)
T ss_pred HHHHHHHHHcCCCEEEECCcHHHhhhh-----HHH---HHHCCCceeCcCHHHHHHH----------------hhHHHHH
Confidence 335555566778888888877665532 222 33556554 44444333 6799999
Q ss_pred HHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCC
Q 004147 102 EQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNR 181 (771)
Q Consensus 102 qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~ 181 (771)
.+++++|||++.+-..+. +. +..+||.-- +.|+|+||.-=. .|.|+. +......+
T Consensus 109 ~fm~k~~IPta~y~~f~~--~e-------~a~ayi~~~----g~piVVKadGLa-----------aGKGV~-V~~~~eeA 163 (428)
T COG0151 109 DFMKKYGIPTAEYEVFTD--PE-------EAKAYIDEK----GAPIVVKADGLA-----------AGKGVI-VAMTLEEA 163 (428)
T ss_pred HHHHHcCCCcccccccCC--HH-------HHHHHHHHc----CCCEEEeccccc-----------CCCCeE-EcCCHHHH
Confidence 999999999998887763 21 345666533 379999993323 455664 32221111
Q ss_pred cccccccc--cccc-cCcceEEeeccCCCCceeEEEEECCceeE---E--EeeeCCCCCCeeeecCCCCceeeeee-CCH
Q 004147 182 SSEFHPDV--RRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAH---A--EARKSPVVDGVVMRNPDGKEVRYPVL-LTP 252 (771)
Q Consensus 182 sS~~~~~~--~~~r-~~gsyIyEEFi~t~G~DIKVytVG~~~vh---A--e~RKSP~~DG~vrrN~~gke~r~pv~-Lt~ 252 (771)
....+.-+ ..+- .....+.|||+.-.=--+=|+|=|..++- | -.| +.||+-=-|+-|=+.=.|.. +|+
T Consensus 164 ~~a~~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~~DG~~v~p~p~aQDhKr---a~dgD~GPNTGGMGaysp~P~~t~ 240 (428)
T COG0151 164 EAAVDEMLEGNAFGSAGARVVIEEFLDGEEFSLQAFVDGKTVIPMPTAQDHKR---AYDGDTGPNTGGMGAYSPAPFITD 240 (428)
T ss_pred HHHHHHHHhhccccCCCCcEEEEecccceEEEEEEEEcCCeEEECcccccccc---ccCCCCCCCCCCCCCCCCCCCCCH
Confidence 11000000 0111 22458999999754445556666655431 1 123 24888878888766555443 455
Q ss_pred HHHH-----HHHHHHHHh---cCceeeE---eEEeeCCCcEEEecC
Q 004147 253 NEKQ-----MAREVCIAF---RQAVCGF---DLLRCEGRSYVCDVN 287 (771)
Q Consensus 253 eEk~-----iA~ka~~af---gq~VcGf---DLLRs~g~syVcDVN 287 (771)
+.-+ |...+.+++ |-.++|| =|+-+.++|+|+|.|
T Consensus 241 e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN 286 (428)
T COG0151 241 EVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFN 286 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCCcEEEEEe
Confidence 5333 333444555 4457776 234567789999999
No 91
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=89.34 E-value=0.59 Score=56.78 Aligned_cols=181 Identities=20% Similarity=0.262 Sum_probs=117.5
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 004147 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (771)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 162 (771)
|+==..+....+-||-.+-..-.++|||+ +-..++|. ++-+-++--.+..++|+++|..-|-
T Consensus 108 FIGP~~e~ld~~GdKv~Ar~~A~~agvPv----ipgt~~~~-------~~~ee~~~fa~~~gyPvmiKA~~GG------- 169 (1149)
T COG1038 108 FIGPKPEVLDMLGDKVKARNAAIKAGVPV----IPGTDGPI-------ETIEEALEFAEEYGYPVMIKAAAGG------- 169 (1149)
T ss_pred EeCCCHHHHHHhccHHHHHHHHHHcCCCc----cCCCCCCc-------ccHHHHHHHHHhcCCcEEEEEccCC-------
Confidence 44456788899999999888888999995 22233332 2222222123446699999998775
Q ss_pred eccCCCChHHHHhhhcCCCccccccccc----ccccCcceEEeeccCCCCceeEEEEECC---ceeEEEeeeCCCCCCee
Q 004147 163 YPSSAGGGMKELFRKVGNRSSEFHPDVR----RVRREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVV 235 (771)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~~~~~----~~r~~gsyIyEEFi~t~G~DIKVytVG~---~~vhAe~RKSP~~DG~v 235 (771)
||-++|..|+...-...|..... ++ -++...+|.|+.. -+-|-|=+.|+ +++|--.|-+-+ =
T Consensus 170 -----GGRGMR~vr~~~~l~~~~~~AksEAkaAF-G~~eVyvEk~ve~-pkHIEVQiLgD~~GnvvHLfERDCSv----Q 238 (1149)
T COG1038 170 -----GGRGMRVVRSEADLAEAFERAKSEAKAAF-GNDEVYVEKLVEN-PKHIEVQILGDTHGNVVHLFERDCSV----Q 238 (1149)
T ss_pred -----CccceeeecCHHHHHHHHHHHHHHHHHhc-CCCcEEhhhhhcC-cceeEEEEeecCCCCEEEEeecccch----h
Confidence 33222444432211111111000 12 3455556777765 67788888875 689999998753 5
Q ss_pred eecCCCCceeeeeeCCHHHH----HHHHHHHHHhcCceee-EeEEee-CCCcEEEecCCcccc
Q 004147 236 MRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFV 292 (771)
Q Consensus 236 rrN~~gke~r~pv~Lt~eEk----~iA~ka~~afgq~VcG-fDLLRs-~g~syVcDVNGwSFV 292 (771)
|||--==|++-.+-|+++.+ +-|.|+|+..|-.=+| |..|-. .|+.|.+|||=---|
T Consensus 239 RRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvNPRiQV 301 (1149)
T COG1038 239 RRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVNPRIQV 301 (1149)
T ss_pred hccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCCCcEEEEEecCceee
Confidence 67776678888888998765 4689999999987777 666776 458999999965555
No 92
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=89.25 E-value=0.4 Score=44.59 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLL 543 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L 543 (771)
|+.+|+.|+- .+..-..||||+-.||+.||++|+.++.
T Consensus 34 a~~l~~~l~~------------~~~~~~~v~sSp~~R~~~Ta~~~~~~~~ 71 (153)
T cd07040 34 ARELGKALRE------------RYIKFDRIYSSPLKRAIQTAEIILEGLF 71 (153)
T ss_pred HHHHHHHHHH------------hCCCCCEEEECChHHHHHHHHHHHHHhc
Confidence 8999999981 0123346999999999999999999985
No 93
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=89.09 E-value=0.16 Score=61.06 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHHhcccccccccCCCchhhhhHHHHHhh-hccC
Q 004147 727 LEGLDELFKVAQLLADGVIPNEYGINPKQKLKIGSKNSS-LNGK 769 (771)
Q Consensus 727 l~~l~eLY~~ak~Lad~V~PqEYGI~~~eKl~IG~~i~~-LL~K 769 (771)
.....+||..||.++|++.|++|||++.+|+.+|..|+. |..+
T Consensus 797 ~~~r~~lY~~sk~~v~sl~~~ryG~~~~~~ln~~~~t~~~L~~~ 840 (1018)
T KOG1057|consen 797 RHVRTRLYFTSKSHVHSLLLRRYGISDVEKLNDGLLTSIRLYEQ 840 (1018)
T ss_pred HHHHHHHhhhhHhhhhhhhhhhcCCchhhhhcccchhceeechh
Confidence 346889999999999999999999999999999999998 7643
No 94
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=88.06 E-value=0.5 Score=53.61 Aligned_cols=55 Identities=31% Similarity=0.457 Sum_probs=42.0
Q ss_pred cch---HHHHHHHhc--CCCCCCchhhhhhcc-cccceEeecCCchhHhhHHHHHhhhhcccCC
Q 004147 491 DNG---VNEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548 (771)
Q Consensus 491 ~~g---Ae~LG~~fR--yp~~~~gLlrLhst~-rhDlKIysSdEgRVq~TAaaFakg~L~lege 548 (771)
..| +-+||+.+| |=-.+ ++ |-..| +.++.|+|||=-|+.+||++..+||+.-++.
T Consensus 73 ~~G~~Q~~~LG~~LR~rYvr~~-~f--L~~~y~~~ev~iRStd~nRtl~SAqs~laGlfp~~~~ 133 (411)
T KOG3720|consen 73 DRGMEQMFELGRFLRKRYVRYG-NF--LSPKYNPKEVYIRSTDVNRTLMSAQSVLAGLFPPEGR 133 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-cc--CCcccCcceEEEecCCccHHHHHHHHHHHhhCCCCCC
Confidence 556 889999999 32111 23 22222 7799999999999999999999999999755
No 95
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=85.79 E-value=6.8 Score=37.90 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=52.6
Q ss_pred cccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHH--HhcCce
Q 004147 192 VRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCI--AFRQAV 269 (771)
Q Consensus 192 ~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~--afgq~V 269 (771)
...+...+..|-++ -..--|+|++.++++.+ .+-. |.. .....++.-+-|.++.. .-.-..
T Consensus 32 ~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~-s~Y~----~~~-----------~~~~~~~~~~~~~~~~~~~~~~p~~ 94 (130)
T PF14243_consen 32 LDPDTPVLVSEVVE-IESEWRCFIVDGEVVTG-SPYR----GDW-----------DLEPDPDVVAFAIQALAAAWTLPPA 94 (130)
T ss_pred CCCCceEEEeceEe-eeeeEEEEEECCEEEEE-eecC----CCc-----------ccCCCHHHHHHHHHHHHhcccCCCe
Confidence 34566677777776 46778999999886554 3331 111 11113444444444444 455788
Q ss_pred eeEeEEee-CCCcEEEecC-Ccc
Q 004147 270 CGFDLLRC-EGRSYVCDVN-GWS 290 (771)
Q Consensus 270 cGfDLLRs-~g~syVcDVN-GwS 290 (771)
|.+|+=++ +|+.+|+|+| ||+
T Consensus 95 ~vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 95 YVLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred EEEEEEEeCCCCEEEEEecCccc
Confidence 99999999 7789999999 554
No 96
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=82.39 E-value=2.3 Score=49.74 Aligned_cols=187 Identities=16% Similarity=0.170 Sum_probs=116.3
Q ss_pred HHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeec
Q 004147 74 ESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPV 152 (771)
Q Consensus 74 i~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv 152 (771)
.+-|+..+. |+==+..+++.+-||..+-+|.+++|||+=+-+ ++ ...+++-..-....|++|+.+|++
T Consensus 88 ae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~----~g-------~~qs~e~~~~~a~eIgyPvMiKa~ 156 (670)
T KOG0238|consen 88 AELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGY----HG-------EDQSDEEAKKVAREIGYPVMIKAT 156 (670)
T ss_pred HHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCc----cc-------ccccHHHHHHHHHhcCCcEEEEec
Confidence 344555553 344466788889999999999999999953211 11 111222222233468899999998
Q ss_pred cccCcceeEEeccCCCChHHHHhhhcCCCccccccccccc-------ccCcceEEeeccCCCCceeEEEEECC---ceeE
Q 004147 153 HGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV-------RREGSYIYEEFMPTGGTDVKVYTVGP---EYAH 222 (771)
Q Consensus 153 ~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~-------r~~gsyIyEEFi~t~G~DIKVytVG~---~~vh 222 (771)
.|- -|.|+ |+..+- .+|...+... =-+...+.|.||.. -+-|-|=+.|+ +++|
T Consensus 157 ~GG-----------GGkGM-ria~~~----~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~n-pRHiEvQv~gD~hGnav~ 219 (670)
T KOG0238|consen 157 AGG-----------GGKGM-RIAWSE----EEFEEGLESAKQEAAKSFGDDGMLLEKFIDN-PRHIEVQVFGDKHGNAVH 219 (670)
T ss_pred cCC-----------CCcce-EeecCh----HHHHHHHHHHHHHHHhhcCcchhhHHHhccC-CceEEEEEEecCCCcEEE
Confidence 875 23344 343321 1222111111 14555688999987 56666666665 5677
Q ss_pred EEeeeCCCCCCeeeecCCCCceeeeeeCCHHHH----HHHHHHHHHhcCceee-EeEEe-eCCCcEEEecCCcccc
Q 004147 223 AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLLR-CEGRSYVCDVNGWSFV 292 (771)
Q Consensus 223 Ae~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk----~iA~ka~~afgq~VcG-fDLLR-s~g~syVcDVNGwSFV 292 (771)
--.|-+-+ =|||--==|.+-.-.|+++-+ +-|.++|+|.|--=+| |..|- +.+..|.+|+|--=-|
T Consensus 220 l~ERdCSv----QRRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~~~FyFmEmNTRLQV 291 (670)
T KOG0238|consen 220 LGERDCSV----QRRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSKDNFYFMEMNTRLQV 291 (670)
T ss_pred ecccccch----hhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCCCcEEEEEeeceeee
Confidence 77787643 467765555554555666543 6789999999987777 45444 4677889999976555
No 97
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=79.53 E-value=1.1 Score=47.46 Aligned_cols=55 Identities=24% Similarity=0.564 Sum_probs=27.8
Q ss_pred cEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCC----CC--ceeEEEEECC
Q 004147 146 PFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT----GG--TDVKVYTVGP 218 (771)
Q Consensus 146 PfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t----~G--~DIKVytVG~ 218 (771)
-+|.||..|+ +|-|.. |++... .... ......+.||.|+||+. +| -|||+||+=.
T Consensus 67 ~wI~KP~~~~-----------rG~GI~-l~~~~~----~i~~--~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvt 127 (292)
T PF03133_consen 67 LWIVKPSNGS-----------RGRGIK-LFNNLE----QILR--FSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVT 127 (292)
T ss_dssp -EEEEES------------------EE-EES-HH----HHHC--CHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-
T ss_pred EEEEeccccC-----------CCCCce-ecCCHH----HHHH--HhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEe
Confidence 5899998887 676764 666432 1110 01237889999999975 67 7999998733
No 98
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=78.44 E-value=1.6 Score=50.13 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHHHHHHhc--CCCCCCchhhhhhcc-cccceEeecCCchhHhhHHHHHhhhhcccC
Q 004147 494 VNEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (771)
Q Consensus 494 Ae~LG~~fR--yp~~~~gLlrLhst~-rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (771)
--+||+.+| |-. .|||-=+..| ..++.|+|++-.|.++||++|..||.--.|
T Consensus 81 ~~~lG~~lR~rY~~--~~lL~~~~c~~~~~v~v~a~~~~RTi~SAqafl~GlyP~c~ 135 (436)
T PRK10172 81 VTLLGHYQRQRLVA--DGLLAAKGCPQPGQVAAIADVDQRTRKTGEAFLAGLAPDCA 135 (436)
T ss_pred HHHHHHHHHHHHHh--cCCCCcccCCCcceEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 357999999 632 3554222222 456899988888999999999999998776
No 99
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=77.27 E-value=1.8 Score=49.74 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=33.8
Q ss_pred HHHHHHHhc---CCCCCCchhhhhhcccccc----eEeec-CCchhHhhHHHHHhhhhcccC
Q 004147 494 VNEIAYWWG---SHSEGTGLLRLHSTYRHDL----KIYSS-DEGRVQMSAAAFAKGLLDLEG 547 (771)
Q Consensus 494 Ae~LG~~fR---yp~~~~gLlrLhst~rhDl----KIysS-dEgRVq~TAaaFakg~L~leg 547 (771)
...-++.|- ||+ ||+ ..| ++-+. -+|.. ..|.|....++|-+++++.-|
T Consensus 119 Ti~SAqafl~GlyP~--c~i-~vh--~~~~~~~~DplF~pv~~~~~~~d~~~~~~a~~~~~~ 175 (436)
T PRK10172 119 TRKTGEAFLAGLAPD--CAI-TVH--TQADTSKPDPLFNPLKTGVCQLDNANVTDAILSRAG 175 (436)
T ss_pred HHHHHHHHHHhcCCC--CCC-cce--ecCCCCCCCCccChhhcCCCccCHHHHHHHHHHHhC
Confidence 566787774 995 564 334 33343 37766 677889999999999988644
No 100
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=77.21 E-value=2.3 Score=41.35 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=29.4
Q ss_pred cch---HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 491 DNG---VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 491 ~~g---Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
..| |+.+|+.|+ + ..-| .||||.-.|++.||+++++.+
T Consensus 26 ~~G~~qa~~l~~~l~------~-------~~~~-~i~sSpl~Ra~qTA~~i~~~~ 66 (177)
T TIGR03162 26 EKGAEQAAALREKLA------D-------VPFD-AVYSSPLSRCRELAEILAERR 66 (177)
T ss_pred hhHHHHHHHHHHHhc------C-------CCCC-EEEECchHHHHHHHHHHHhhc
Confidence 455 999999987 1 1112 499999999999999998753
No 101
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=74.46 E-value=1.1 Score=47.11 Aligned_cols=47 Identities=36% Similarity=0.456 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc
Q 004147 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (771)
Q Consensus 96 DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge 155 (771)
+-..++++|+..|||+|++.++... ++.... -..+++|+|.|-++-.
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~~~~~------------~ea~~~-a~~ig~PvvlKi~sp~ 57 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRLVTSA------------EEAVAA-AEEIGFPVVLKIVSPD 57 (222)
T ss_dssp -HHHHHHHHHTTT------EEESSH------------HHHHHH-HHHH-SSEEEEEE-TT
T ss_pred CHHHHHHHHHHcCcCCCCeeEeCCH------------HHHHHH-HHHhCCCEEEEEecCC
Confidence 4568999999999999999999652 233331 1235689999999864
No 102
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=74.07 E-value=5.6 Score=47.99 Aligned_cols=178 Identities=21% Similarity=0.265 Sum_probs=112.4
Q ss_pred CchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccC
Q 004147 87 ELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSS 166 (771)
Q Consensus 87 dl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~ 166 (771)
+.+-..-+-||-.+-++--++|||+= -..++|- ....|..+++. ..+.|+|+|..-|-
T Consensus 138 speVi~~mGDKv~AR~~Ai~agVpvV----PGTpgPi---tt~~EA~eF~k----~yG~PvI~KAAyGG----------- 195 (1176)
T KOG0369|consen 138 SPEVIDSMGDKVAARAIAIEAGVPVV----PGTPGPI---TTVEEALEFVK----EYGLPVIIKAAYGG----------- 195 (1176)
T ss_pred CHHHHHHhhhHHHHHHHHHHcCCCcc----CCCCCCc---ccHHHHHHHHH----hcCCcEEEeecccC-----------
Confidence 34455677889888888889999952 1223442 12223334443 23489999998886
Q ss_pred CCChHHHHhhhcCCCccccccccc-cc--ccCcceEEeeccCCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCC
Q 004147 167 AGGGMKELFRKVGNRSSEFHPDVR-RV--RREGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPD 240 (771)
Q Consensus 167 ~GgG~~rLfrkign~sS~~~~~~~-~~--r~~gsyIyEEFi~t~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~ 240 (771)
||-+.|..|+...-...|.-..+ +. =.+|+..+|.|++. -+-|-|-..|+ +++|--.|-+-| -||--.
T Consensus 196 -GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSv----QRRHQK 269 (1176)
T KOG0369|consen 196 -GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSV----QRRHQK 269 (1176)
T ss_pred -CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccch----hhhhcc
Confidence 44333566654433322321111 11 16899999999987 56677777775 679999997753 233332
Q ss_pred CCceeeeeeCCHHHHH----HHHHHHHHhcCceee-EeEEee-CCCcEEEecCCcccc
Q 004147 241 GKEVRYPVLLTPNEKQ----MAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFV 292 (771)
Q Consensus 241 gke~r~pv~Lt~eEk~----iA~ka~~afgq~VcG-fDLLRs-~g~syVcDVNGwSFV 292 (771)
==|++-.-.|.++-++ -|.|+|+..|-.=+| +..|-. .|+-|.+|||--=-|
T Consensus 270 VVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN~RlQV 327 (1176)
T KOG0369|consen 270 VVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVNPRLQV 327 (1176)
T ss_pred eeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccCCCEEEEEecCceee
Confidence 3355544456665543 478999999988887 566666 678999999976555
No 103
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=71.57 E-value=6.3 Score=46.81 Aligned_cols=181 Identities=15% Similarity=0.200 Sum_probs=114.2
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 004147 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (771)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 162 (771)
|+==+..++..+-||..+-.+..+.|+|+=.-+ .+| +++.+.+.--..++++|+.+|..-|-
T Consensus 102 fIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~----~g~-------~qd~~~~~~~A~eiGyPVlIKAsaGG------- 163 (645)
T COG4770 102 FIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGY----HGP-------IQDAAELVAIAEEIGYPVLIKASAGG------- 163 (645)
T ss_pred EECCCHHHHHHhccHHHHHHHHHHcCCCccCCC----CCc-------ccCHHHHHHHHHhcCCcEEEEeccCC-------
Confidence 444466788899999999999999999953221 122 23444444455678899999997765
Q ss_pred eccCCCChHHHHhhhcCCCccccccccc----ccccCcceEEeeccCCCCceeEEEEEC---CceeEEEeeeCCCCCCee
Q 004147 163 YPSSAGGGMKELFRKVGNRSSEFHPDVR----RVRREGSYIYEEFMPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVV 235 (771)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~~~~~----~~r~~gsyIyEEFi~t~G~DIKVytVG---~~~vhAe~RKSP~~DG~v 235 (771)
-|.|+ |+.++...-...|+.--. ++ -++..+.|.|+.. -+-|-|=|.| ++++|.=+|-+-. =
T Consensus 164 ----GGKGM-Rvv~~~~e~~e~l~sarrEA~asF-Gddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCSl----Q 232 (645)
T COG4770 164 ----GGKGM-RVVETPEEFAEALESARREAKASF-GDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCSL----Q 232 (645)
T ss_pred ----CCCce-EeecCHHHHHHHHHHHHHHHHhhc-CCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccch----h
Confidence 23344 354443322222221000 11 5677889999987 4555555565 4678888887742 4
Q ss_pred eecCCCCceeeeeeCCHHHH----HHHHHHHHHhcCceee-EeEEee-CCCcEEEecCCcccc
Q 004147 236 MRNPDGKEVRYPVLLTPNEK----QMAREVCIAFRQAVCG-FDLLRC-EGRSYVCDVNGWSFV 292 (771)
Q Consensus 236 rrN~~gke~r~pv~Lt~eEk----~iA~ka~~afgq~VcG-fDLLRs-~g~syVcDVNGwSFV 292 (771)
|||--==|-+-.=-||++.+ +-|.++|++.|--=+| |..|-. ++..|.+|+|--=-|
T Consensus 233 RRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQV 295 (645)
T COG4770 233 RRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQV 295 (645)
T ss_pred hhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCCCcEEEEEeecceec
Confidence 56554334443334777665 4589999999977666 555555 455788898865544
No 104
>KOG3720 consensus Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]
Probab=70.89 E-value=2.7 Score=47.78 Aligned_cols=17 Identities=53% Similarity=0.933 Sum_probs=16.1
Q ss_pred cceEEEEEEEEcCCCCc
Q 004147 354 EELRCVIAVMRHGDRTP 370 (771)
Q Consensus 354 ~eLr~vv~ViRHgDRTP 370 (771)
-+|.=|.+|.|||||||
T Consensus 32 ~~Lefv~~i~RHGdRaP 48 (411)
T KOG3720|consen 32 GELEFVQVIFRHGDRAP 48 (411)
T ss_pred CceEEEEEEeecCCCCc
Confidence 48999999999999999
No 105
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=68.72 E-value=5.2 Score=37.72 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.|+.. + +. --.||||.-.|++.||+++++++
T Consensus 34 a~~~~~~l~~~----~-------~~-~~~i~~Sp~~Ra~qTa~~l~~~~ 70 (153)
T cd07067 34 ARALGKRLKEL----G-------IK-FDRIYSSPLKRAIQTAEIILEEL 70 (153)
T ss_pred HHHHHHHHHhc----C-------CC-CCEEEECcHHHHHHHHHHHHHhc
Confidence 88999888721 0 12 22599999999999999999887
No 106
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=64.37 E-value=3.7 Score=45.88 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeecc-CcEEEeec
Q 004147 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW-KPFVEKPV 152 (771)
Q Consensus 98 ~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~-kPfVeKpv 152 (771)
..+.++|++.|||+|++.++... ++.... -..++ +|+|+||.
T Consensus 6 ~~aK~ll~~~GIpvp~~~~~~~~------------~ea~~~-~~~ig~~PvVvK~~ 48 (386)
T TIGR01016 6 YQAKQIFAKYGIPVPRGYVATSV------------EEAEEI-AAKLGAGPVVVKAQ 48 (386)
T ss_pred HHHHHHHHHcCCCCCCceeeCCH------------HHHHHH-HHHhCCCcEEEEec
Confidence 46789999999999999988531 122221 11345 79999997
No 107
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=64.13 E-value=6.9 Score=39.43 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.|+ + +.=| .||||+-.|++-||+++++.+
T Consensus 35 a~~l~~~l~------~-------~~~~-~i~sSpl~Ra~qTA~~i~~~~ 69 (204)
T TIGR03848 35 AAALAERLA------D-------LPIA-AIVSSPLERCRETAEPIAEAR 69 (204)
T ss_pred HHHHHHHHh------c-------CCCC-EEEeCcHHHHHHHHHHHHHhc
Confidence 889999887 1 1112 499999999999999998764
No 108
>PRK13463 phosphatase PhoE; Provisional
Probab=64.13 E-value=7.2 Score=39.53 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAK 540 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFak 540 (771)
|+.+|+.|+ ++ .+ | .||||+-.|++-||++++.
T Consensus 37 a~~~~~~l~------~~-----~~--~-~i~sSpl~Ra~qTA~~i~~ 69 (203)
T PRK13463 37 AKQLGERMK------DL-----SI--H-AIYSSPSERTLHTAELIKG 69 (203)
T ss_pred HHHHHHHhc------CC-----CC--C-EEEECCcHHHHHHHHHHHh
Confidence 888998887 11 11 2 5999999999999999975
No 109
>PRK03482 phosphoglycerate mutase; Provisional
Probab=61.89 E-value=8.6 Score=39.07 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKG 541 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg 541 (771)
|+.+|+.|.- .+ + | .||||.-.|++-||+++++.
T Consensus 36 A~~~~~~l~~----~~-------~--~-~I~sSpl~Ra~qTA~~i~~~ 69 (215)
T PRK03482 36 AMQVAERAKE----LG-------I--T-HIISSDLGRTRRTAEIIAQA 69 (215)
T ss_pred HHHHHHHHhc----CC-------C--C-EEEECCcHHHHHHHHHHHHh
Confidence 8889988861 11 1 2 69999999999999999864
No 110
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=61.13 E-value=26 Score=40.19 Aligned_cols=65 Identities=25% Similarity=0.400 Sum_probs=46.1
Q ss_pred cEEEeeccc-cCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCC---CCc--eeEEEEECCc
Q 004147 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GGT--DVKVYTVGPE 219 (771)
Q Consensus 146 PfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t---~G~--DIKVytVG~~ 219 (771)
.+|.||+-| |.-||-|+-+ |+. +.+.-| .| .+..+|||+|.+- +|. =|=+++||++
T Consensus 309 ~yV~KPi~gREG~nV~i~~~----g~~--~~~~~g----~y--------~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~ 370 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEY----GGE--SEDTDG----NY--------AEEPRVVQQLIEWGRFDGCYPMIGVWMVGSE 370 (397)
T ss_pred CEEeccCCCcCCCCEEEEEC----CeE--EeccCC----CC--------CCCCeEEEEccCCcccCCcEEEEEEEEECCE
Confidence 499999999 8777777743 222 221111 11 3567899999974 554 3778999999
Q ss_pred eeEEEeeeC
Q 004147 220 YAHAEARKS 228 (771)
Q Consensus 220 ~vhAe~RKS 228 (771)
+|.---|.+
T Consensus 371 ~aGlgiRe~ 379 (397)
T PHA02117 371 AAGLCIRED 379 (397)
T ss_pred eeEEEEecC
Confidence 999999987
No 111
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=59.89 E-value=9 Score=40.05 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++- .| +.=| .||||+-.|++-||+++++++
T Consensus 23 A~~l~~~L~~----~~-------~~~d-~iysSpl~Ra~qTA~~i~~~~ 59 (236)
T PTZ00123 23 AREAGKLLKE----KG-------FRFD-VVYTSVLKRAIKTAWIVLEEL 59 (236)
T ss_pred HHHHHHHHHh----cC-------CCCC-EEEECChHHHHHHHHHHHHhc
Confidence 8899988861 01 1112 599999999999999999765
No 112
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=59.33 E-value=9.2 Score=38.44 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKG 541 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg 541 (771)
|+.+|+.|+ ++ .-| +||||.-.|++-||++++++
T Consensus 35 a~~~~~~l~------~~-------~~~-~i~sSpl~Ra~qTA~~i~~~ 68 (199)
T PRK15004 35 AQNLHTLLR------DV-------PFD-LVLCSELERAQHTARLVLSD 68 (199)
T ss_pred HHHHHHHHh------CC-------CCC-EEEECchHHHHHHHHHHHhc
Confidence 888888887 11 112 49999999999999999875
No 113
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=55.98 E-value=12 Score=40.94 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCCCCchhh-hhhcccccceEeecCCchhHhhHHHHHhhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLR-LHSTYRHDLKIYSSDEGRVQMSAAAFAKGLL 543 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlr-Lhst~rhDlKIysSdEgRVq~TAaaFakg~L 543 (771)
|+.||+.|+ ++.. .|.++.-| .||||+=.|++.||++++.++.
T Consensus 134 A~~lg~~L~------~~~~~~~~~~~~d-~IysSPL~RA~qTAeiIa~~~~ 177 (299)
T PTZ00122 134 ARITGKYLK------EQFGEILVDKKVK-AIYHSDMTRAKETAEIISEAFP 177 (299)
T ss_pred HHHHHHHHH------HhhccccccCCCC-EEEEcCcHHHHHHHHHHHHhCC
Confidence 889998887 1110 01112223 5999999999999999987753
No 114
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=54.78 E-value=15 Score=42.72 Aligned_cols=193 Identities=21% Similarity=0.260 Sum_probs=97.6
Q ss_pred eeEEEEeecCCccCChhHHHHHHHHhhcCCeEEEE------eCccccccCCCCCCCcccee---------eccccCCCCh
Q 004147 6 KITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIH------FGDKVILEDPIEKWPICDCL---------IAFYSSGYPL 70 (771)
Q Consensus 6 ~~~iGvCam~~Ka~SkPm~~IL~rl~~~~~f~~ii------F~d~~IL~~~ve~WP~cd~l---------Isf~s~GfpL 70 (771)
+.+|.|+=-.-...+.=-..+..++.+.|.--+|. |.|..+.. .+=.+|++ |..+..-=||
T Consensus 185 ~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d~~~L~y~~g~L~~----~~~~ID~VyRR~Vt~e~l~~~d~~~~l 260 (445)
T PF14403_consen 185 KPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICDPRDLEYRDGRLYA----GGRPIDAVYRRFVTSELLERYDEVQPL 260 (445)
T ss_pred CCcEEEEecccCCccchHHHHHHHHHHcCCceEecChHHceecCCEEEE----CCEeeehhhHhhhhHHhhhccccchHH
Confidence 34566554444333333345566666666433333 22333222 34445553 2233333345
Q ss_pred HHHHHHHHhcCCcccCCchhh--------hHhhhHHHHH------HHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 004147 71 EKAESYATLRKPFLVNELEPQ--------HLLHDRRKVY------EQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (771)
Q Consensus 71 ~kai~y~~lr~p~~iNdl~~q--------~~l~DR~~~~------qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (771)
-.|++ -+...++|++.+| .+|||-+... +-+=+.. +|-|..+... .... --+.-|.+
T Consensus 261 i~Ay~---~~av~~vgsfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~H--vP~T~~l~~~-~~~~---~g~~~dL~ 331 (445)
T PF14403_consen 261 IQAYR---DGAVCMVGSFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRH--VPWTRLLTAG-RTTY---QGEDVDLV 331 (445)
T ss_pred HHHHh---cCCeEEecchhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHh--CCceEEEcCc-cccc---cccchhHH
Confidence 44444 7788899999887 3455543222 1122223 4667776541 0000 00111222
Q ss_pred e--ecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc--ccc--cCcceEEeeccCC----
Q 004147 137 E--VHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR--RVR--REGSYIYEEFMPT---- 206 (771)
Q Consensus 137 ~--v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~--~~r--~~gsyIyEEFi~t---- 206 (771)
+ +.. ..-+|+||.++- .|.|+- +| -+++++-. .++ .++.||+|||+..
T Consensus 332 ~~~~a~---r~~lVLKP~D~Y-----------gg~GV~-----~G---~e~~~eeW~~~l~~a~~~~yilQe~v~~~~~~ 389 (445)
T PF14403_consen 332 EFAIAN---RDRLVLKPNDEY-----------GGKGVY-----IG---WETSPEEWEAALEEAAREPYILQEYVRPPREP 389 (445)
T ss_pred HHHHhc---hhcEEecccccc-----------CCCCeE-----EC---CcCCHHHHHHHHHHHhcCCcEEEEEecCCccc
Confidence 1 111 146999999985 333432 33 23333322 222 4569999999854
Q ss_pred -----CCc--------eeEEEEECCceeEEEeeeCCCCCCee
Q 004147 207 -----GGT--------DVKVYTVGPEYAHAEARKSPVVDGVV 235 (771)
Q Consensus 207 -----~G~--------DIKVytVG~~~vhAe~RKSP~~DG~v 235 (771)
+|+ ++=.|+-|++++.+-+|-|+ .+..
T Consensus 390 ~~~~~dg~~~~~~~~~~~g~fly~~~~~G~~tR~g~--~~vi 429 (445)
T PF14403_consen 390 MPAFEDGEVVFEEYPYDSGPFLYGGKFAGCYTRLGT--GNVI 429 (445)
T ss_pred cccccCCceeEeeeeeeccceeECCEEEEEEEEecc--CCce
Confidence 121 23347888999999999995 5544
No 115
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=54.26 E-value=9.6 Score=35.49 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.|.- .-..--.||||.-.||+-||+++++++
T Consensus 34 A~~~~~~l~~------------~~~~~~~i~~Sp~~R~~qTA~~~~~~~ 70 (158)
T PF00300_consen 34 ARQLGEYLAE------------RDIQIDVIYSSPLRRCIQTAEIIAEGL 70 (158)
T ss_dssp HHHHHHHHHH------------TTSSCSEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhhcccccc------------cccCceEEecCCcchhhhhhchhhccc
Confidence 8888888761 011112399999999999999999954
No 116
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=53.89 E-value=14 Score=39.22 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.|+- . .+.=| .||||+=.|++.||++++..+
T Consensus 35 A~~la~~L~~----~-------~~~~d-~IysSpl~Ra~qTA~~i~~~~ 71 (247)
T PRK14115 35 AKAAGKLLKE----E-------GYTFD-VAYTSVLKRAIRTLWIVLDEL 71 (247)
T ss_pred HHHHHHHHHh----c-------CCCCC-EEEEcCCHHHHHHHHHHHHHc
Confidence 8999988871 0 11123 599999999999999998643
No 117
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=53.59 E-value=7 Score=43.70 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeec-cCcEEEeec
Q 004147 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF-WKPFVEKPV 152 (771)
Q Consensus 97 R~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~-~kPfVeKpv 152 (771)
-..+.++|+++|||+|++.++... ++....- ..+ ++|+|+||.
T Consensus 5 e~~ak~lL~~~gIpvp~~~~~~~~------------~ea~~~a-~~i~g~PvVvK~~ 48 (388)
T PRK00696 5 EYQAKELFAKYGVPVPRGIVATTP------------EEAVEAA-EELGGGVWVVKAQ 48 (388)
T ss_pred HHHHHHHHHHcCCCCCCCeeeCCH------------HHHHHHH-HHcCCCcEEEEEe
Confidence 456789999999999999988642 2333221 123 589999996
No 118
>PRK01112 phosphoglyceromutase; Provisional
Probab=51.02 E-value=16 Score=38.24 Aligned_cols=35 Identities=17% Similarity=-0.026 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.|+ + .+=| .||||+=.|++.||++++..+
T Consensus 36 a~~l~~~L~------~-------~~~d-~iysSpl~Ra~qTA~~i~~~~ 70 (228)
T PRK01112 36 AIAAGEKIK------D-------LPID-CIFTSTLVRSLMTALLAMTNH 70 (228)
T ss_pred HHHHHHHhh------c-------CCCC-EEEEcCcHHHHHHHHHHHHhh
Confidence 899999888 1 1112 599999999999999998643
No 119
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=50.89 E-value=16 Score=38.18 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAK 540 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFak 540 (771)
|+.+|+.|+- . ... | .||||+-.|++.||++|+.
T Consensus 88 A~~lg~~L~~-----~------~~~-d-~I~sSpa~Ra~qTAe~ia~ 121 (201)
T PRK15416 88 ARELGKAFSA-----D------IPD-Y-DLYSSNTVRTIQSATWFSA 121 (201)
T ss_pred HHHHHHHHhC-----C------CCC-C-EEEECCCHHHHHHHHHHhc
Confidence 8899998871 1 112 4 6999999999999999976
No 120
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=49.27 E-value=14 Score=42.32 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=38.2
Q ss_pred HHHHHHhc-CCCCCCchhhhhhc-ccccceEeecCCchhHhhHHHHHhhhhcccC
Q 004147 495 NEIAYWWG-SHSEGTGLLRLHST-YRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (771)
Q Consensus 495 e~LG~~fR-yp~~~~gLlrLhst-~rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (771)
..||+.+| |. ...|||--+-- --.++.+||++--|.+.||++|+.||.--.+
T Consensus 80 ~~~G~~~r~~~-~~~~ll~~~~cp~~~~v~~~a~~~~RT~~Sa~afl~Gl~P~c~ 133 (413)
T PRK10173 80 VYMGHYMREWL-AQQGLVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCD 133 (413)
T ss_pred HHHHHHHHHHH-HHcCCCCCCCCCCcCeEEEEeCCchHHHHHHHHHHHhcCCCCC
Confidence 57999999 22 23466532110 1247999999999999999999999998765
No 121
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=48.76 E-value=48 Score=40.18 Aligned_cols=66 Identities=26% Similarity=0.379 Sum_probs=46.1
Q ss_pred cEEEeeccc-cCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCC---CC--ceeEEEEECCc
Q 004147 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVGPE 219 (771)
Q Consensus 146 PfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t---~G--~DIKVytVG~~ 219 (771)
.+|.||+-| |.-||-|+-+. |.. +-+.-| .| .+..+|||+|.+- +| .=|=+++||++
T Consensus 529 ~yV~KPi~GREG~nV~i~~~~----g~~-~~~~~g----~y--------~~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~ 591 (619)
T PRK10507 529 GYAVKPIAGRCGSNIDLVSHQ----EEV-LDKTSG----KF--------AEQKNIYQQLWCLPKVDGKYIQVCTFTVGGN 591 (619)
T ss_pred CeEeccCCCcCCCCEEEEeCC----CcE-eeccCC----CC--------CCCCeEEEEeccCcccCCCEEEEEEEEECCE
Confidence 599999999 87788887442 211 111111 12 3466899999975 22 44778999999
Q ss_pred eeEEEeeeC
Q 004147 220 YAHAEARKS 228 (771)
Q Consensus 220 ~vhAe~RKS 228 (771)
+++.--|.+
T Consensus 592 ~aG~giRed 600 (619)
T PRK10507 592 YGGTCLRGD 600 (619)
T ss_pred EEEEEEecC
Confidence 999999987
No 122
>PRK13462 acid phosphatase; Provisional
Probab=48.50 E-value=15 Score=37.48 Aligned_cols=33 Identities=18% Similarity=0.049 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHH
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAF 538 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaF 538 (771)
|+.+|+.++ ++ .+.++ .||||+-.|++.||+++
T Consensus 40 A~~l~~~l~------~~-----~~~~~-~i~sSpl~Ra~qTA~~i 72 (203)
T PRK13462 40 AELAGQALG------EL-----ELDDP-LVISSPRRRALDTAKLA 72 (203)
T ss_pred HHHHHHHHH------hC-----CCCCC-EEEECchHHHHHHHHHh
Confidence 888888776 11 12222 59999999999999986
No 123
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=45.34 E-value=25 Score=30.25 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.3
Q ss_pred eeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCc
Q 004147 235 VMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA 268 (771)
Q Consensus 235 vrrN~~gke~r~pv~Lt~eEk~iA~ka~~afgq~ 268 (771)
|+.+...-+..+|-.||++|+.+.-.+|.-+|+.
T Consensus 11 Fkdd~~~~eL~Fp~~ls~~eRriih~la~~lGL~ 44 (60)
T cd02639 11 FKDDRMRDELAFPSSLSPAERRIVHLLASRLGLN 44 (60)
T ss_pred EecCCCceEEEcCCCCCHHHHHHHHHHHHHcCCc
Confidence 5555668899999999999999999999999986
No 124
>PRK01295 phosphoglyceromutase; Provisional
Probab=45.19 E-value=23 Score=36.28 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.|+- .++ .+ | .||||+=.|++-||++++..+
T Consensus 37 A~~~~~~L~~----~~~-----~~--d-~i~sSpl~Ra~qTA~~i~~~~ 73 (206)
T PRK01295 37 AKAAGRKLKA----AGL-----KF--D-IAFTSALSRAQHTCQLILEEL 73 (206)
T ss_pred HHHHHHHHHh----CCC-----CC--C-EEEeCCcHHHHHHHHHHHHHc
Confidence 8888888871 010 11 2 599999999999999998754
No 125
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=42.61 E-value=24 Score=36.64 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.|+- . .+.-| .||||+=.|++.||++++..+
T Consensus 35 a~~~~~~l~~------~-----~~~~d-~i~sSpl~Ra~~TA~~i~~~~ 71 (227)
T PRK14118 35 AKAAGKKLKE------A-----GYEFD-IAFTSVLTRAIKTCNIVLEES 71 (227)
T ss_pred HHHHHHHHHh------c-----CCCCC-EEEEeChHHHHHHHHHHHHhc
Confidence 8889988871 0 11223 599999999999999998753
No 126
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=42.32 E-value=10 Score=39.40 Aligned_cols=42 Identities=38% Similarity=0.579 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCCCCEEEEeccCCCccccccccccceee-ecCeeccCcEEEeecc
Q 004147 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVE-VHGNRFWKPFVEKPVH 153 (771)
Q Consensus 99 ~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~-v~g~~~~kPfVeKpv~ 153 (771)
.+-++|+++|||+|+..++... . |..+... +++ +++|+|+.-
T Consensus 6 qaK~ll~~~gi~vp~g~~a~s~--e-------ea~~~~~~l~~----~~~VvKaQv 48 (202)
T PF08442_consen 6 QAKELLRKYGIPVPRGVVATSP--E-------EAREAAKELGG----KPLVVKAQV 48 (202)
T ss_dssp HHHHHHHCTT----SEEEESSH--H-------HHHHHHHHHTT----SSEEEEE-S
T ss_pred HHHHHHHHcCCCCCCeeecCCH--H-------HHHHHHHHhCC----CcEEEEEeE
Confidence 4568999999999999999763 1 2223332 343 589999964
No 127
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=40.76 E-value=23 Score=42.67 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=28.0
Q ss_pred HHHHHHHhc-CCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhh
Q 004147 494 VNEIAYWWG-SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKG 541 (771)
Q Consensus 494 Ae~LG~~fR-yp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg 541 (771)
|+.||+.|+ .+ . -++..||||+-.||+.||++|++.
T Consensus 452 A~~l~~~l~~~~-----------~-~~~~~V~sSpl~Ra~~TA~~i~~~ 488 (664)
T PTZ00322 452 SRALFEYFQKEI-----------S-TTSFTVMSSCAKRCTETVHYFAEE 488 (664)
T ss_pred HHHHHHHHHhcc-----------C-CCCcEEEcCCcHHHHHHHHHHHhc
Confidence 888888887 11 0 124579999999999999999864
No 128
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=38.71 E-value=29 Score=38.55 Aligned_cols=36 Identities=31% Similarity=0.235 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.|+- + + .+ | .||||.-.|++.||++++.++
T Consensus 206 A~~l~~~l~~------~---~-~~--d-~i~sSpl~Ra~qTA~~i~~~~ 241 (372)
T PRK07238 206 AAAAARYLAA------R---G-GI--D-AVVSSPLQRARDTAAAAAKAL 241 (372)
T ss_pred HHHHHHHHhc------c---C-CC--C-EEEECChHHHHHHHHHHHHhc
Confidence 8888888872 1 0 11 2 599999999999999998764
No 129
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=37.26 E-value=36 Score=33.62 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.|+- .+ +.=| .||||.=.|++.||++++..+
T Consensus 31 a~~~~~~l~~----~~-------~~~d-~i~sSp~~Ra~qTa~~l~~~~ 67 (159)
T PRK10848 31 SRLMANWLKG----QK-------VDIE-RVLVSPYLRAEQTLEVVGECL 67 (159)
T ss_pred HHHHHHHHHh----CC-------CCCC-EEEECCHHHHHHHHHHHHHHh
Confidence 7888887761 01 1112 499999999999999998775
No 130
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=36.71 E-value=27 Score=40.05 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=35.2
Q ss_pred CccceEEEEEEEEcCCCCcCceeeEEechHHHHHHHHhhcC------CCCccceeeccHHhHHHHHHHHHhhc
Q 004147 352 QSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNG------GRPRAETKLKSAVQLQDLLDATRILV 418 (771)
Q Consensus 352 ~~~eLr~vv~ViRHgDRTPKQK~K~~~~~~~f~~l~~~~~~------~~~~~e~klk~~~~L~~~ld~~~~~l 418 (771)
..|.|.=||.|.|||.|.|-+--- +.+..+.. ....+++.-+...++..+=+..|+.+
T Consensus 27 ~~~~L~~vvilsRHg~R~P~~~~~---------~~l~~~t~~~Wp~w~~~~G~LT~~G~~~~~~~G~~~r~~~ 90 (413)
T PRK10173 27 EGYQLQQVLMMSRHNLRAPLANNG---------SVLEQSTPNAWPEWDVPGGQLTTKGGVLEVYMGHYMREWL 90 (413)
T ss_pred ccCeEEEEEEEeecccCCCCCCcc---------hhhhhcCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999975321 12333221 11345666666666555545455444
No 131
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=36.50 E-value=19 Score=40.89 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCCCCCEEEEec
Q 004147 99 KVYEQLEKYGIPVPRYALVNR 119 (771)
Q Consensus 99 ~~~qiL~~~gIP~P~t~~~~r 119 (771)
.+.++|++.|||+|++.++..
T Consensus 7 eak~lL~~yGIpvp~~~~~~~ 27 (392)
T PRK14046 7 QAKELLASFGVAVPRGALAYS 27 (392)
T ss_pred HHHHHHHHcCCCCCCceEECC
Confidence 567899999999999999864
No 132
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=36.24 E-value=23 Score=35.46 Aligned_cols=39 Identities=26% Similarity=0.107 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhhhc
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLD 544 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~ 544 (771)
|+.||+.++= . .. ..-.||||+-.|++.||++.|+.+-.
T Consensus 37 A~~l~~~l~~------~-----~~-~~~~i~sS~l~Ra~~TA~~~a~~~~~ 75 (208)
T COG0406 37 AEALAERLAA------R-----DI-GFDAIYSSPLKRAQQTAEPLAEELGL 75 (208)
T ss_pred HHHHHHHHhh------c-----CC-CCCEEEECchHHHHHHHHHHHHhcCC
Confidence 8888888871 0 00 12248999999999999999987643
No 133
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=35.75 E-value=25 Score=33.49 Aligned_cols=38 Identities=29% Similarity=0.175 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.|+-. + ...--.||||.-.|++-||+++++.+
T Consensus 34 a~~~a~~l~~~----~-------~~~~~~i~sSpl~Ra~qTa~~i~~~~ 71 (155)
T smart00855 34 AEALGELLASL----G-------RLRFDVIYSSPLLRARETAEALAIAL 71 (155)
T ss_pred HHHHHHHHHhc----c-------CCCCCEEEeCchHHHHHHHHHHHHhc
Confidence 88899888721 0 01112499999999999999988755
No 134
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=33.26 E-value=20 Score=41.27 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCCCCCEEEEec
Q 004147 97 RRKVYEQLEKYGIPVPRYALVNR 119 (771)
Q Consensus 97 R~~~~qiL~~~gIP~P~t~~~~r 119 (771)
=..+.++|++.|||+|+..++..
T Consensus 32 EyqaK~LL~~~GIpvp~~~va~t 54 (422)
T PLN00124 32 EYQGAELMSKYGVNVPKGAAASS 54 (422)
T ss_pred HHHHHHHHHHcCCCCCCceeeCC
Confidence 34678999999999999998865
No 135
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=32.45 E-value=31 Score=33.72 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.|.- .| +.-| .||||.=.|++-||+++++.+
T Consensus 31 a~~~~~~l~~----~~-------~~~d-~i~sSp~~Ra~qTa~~l~~~~ 67 (152)
T TIGR00249 31 SRLVAQWLKG----QG-------VEIE-RILVSPFVRAEQTAEIVGDCL 67 (152)
T ss_pred HHHHHHHHHh----CC-------CCCC-EEEECCcHHHHHHHHHHHHHc
Confidence 7777777761 01 1123 599999999999999999886
No 136
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=31.57 E-value=15 Score=40.63 Aligned_cols=83 Identities=18% Similarity=0.146 Sum_probs=47.6
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccC--cceEEeeccCCCCc
Q 004147 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRRE--GSYIYEEFMPTGGT 209 (771)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~--gsyIyEEFi~t~G~ 209 (771)
.++.|+=--+.++.|+|.||+.|+ +|.|-+-..+.+-+....-.+.-..++.+ .+.+.|+|. .|.
T Consensus 75 EDg~iqg~le~~giPyvg~gv~~S-----------a~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l 141 (317)
T COG1181 75 EDGTIQGLLELLGIPYVGKGVLAS-----------AGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGL 141 (317)
T ss_pred CCchHHHHHHHhCCCEecCchhhh-----------hhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--ccc
Confidence 344554222345689999999999 88776533332221112222111122222 334444443 478
Q ss_pred eeEEEEECCceeEEEeee
Q 004147 210 DVKVYTVGPEYAHAEARK 227 (771)
Q Consensus 210 DIKVytVG~~~vhAe~RK 227 (771)
|-++||.+.+...+--|.
T Consensus 142 ~~p~~Vkp~~~gSSvg~~ 159 (317)
T COG1181 142 GFPLFVKPAREGSSVGRS 159 (317)
T ss_pred CCCEEEEcCCccceeeEE
Confidence 899999999998888773
No 137
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=29.07 E-value=67 Score=32.71 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLL 543 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L 543 (771)
|+-+|+.++- .| + +.=+|++|.-.|+|-||++++..|-
T Consensus 34 a~~~a~~L~~----~~-------~-~~D~VL~Spa~Ra~QTae~v~~~~~ 71 (163)
T COG2062 34 AELVAAWLAG----QG-------V-EPDLVLVSPAVRARQTAEIVAEHLG 71 (163)
T ss_pred HHHHHHHHHh----cC-------C-CCCEEEeChhHHHHHHHHHHHHhhC
Confidence 8888888882 11 1 3334999999999999999999998
No 138
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=27.18 E-value=69 Score=34.11 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=20.0
Q ss_pred ceeeEeEEee-CCCcEEEecCCcccccccccc
Q 004147 268 AVCGFDLLRC-EGRSYVCDVNGWSFVKNSYKY 298 (771)
Q Consensus 268 ~VcGfDLLRs-~g~syVcDVNGwSFVK~n~kY 298 (771)
.+-|||+|-. +.+|+++|||.-+=...+..+
T Consensus 237 el~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~ 268 (292)
T PF03133_consen 237 ELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPV 268 (292)
T ss_dssp EEEEEEEEEBTTS-EEEEEEESS------TTT
T ss_pred ceeeeEEEecCCCeEEEeeCCCCCCcccCCHh
Confidence 4789999988 778999999988544444443
No 139
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.06 E-value=16 Score=43.23 Aligned_cols=72 Identities=19% Similarity=0.433 Sum_probs=0.0
Q ss_pred CCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc
Q 004147 111 VPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR 190 (771)
Q Consensus 111 ~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~ 190 (771)
+|+++++ |....+.-++.+-+..+. +|+||-..- .|.|.+ .-+|.+
T Consensus 283 mPrtyil--------P~d~e~lrk~w~~nasr~---wIVkppasa-----------Rg~gIr-v~~kw~----------- 328 (662)
T KOG2156|consen 283 MPRTYIL--------PADREELRKYWEKNASRL---WIVKPPASA-----------RGIGIR-VINKWS----------- 328 (662)
T ss_pred cceeeec--------cccHHHHHHHHhhCcccc---EEecCcccc-----------cCcceE-eccchh-----------
Q ss_pred ccccCcceEEeeccCC----CC--ceeEEEEE
Q 004147 191 RVRREGSYIYEEFMPT----GG--TDVKVYTV 216 (771)
Q Consensus 191 ~~r~~gsyIyEEFi~t----~G--~DIKVytV 216 (771)
.+..+...++|+||.. +| .|+|+|++
T Consensus 329 q~pk~rpLvvQ~yieRP~ling~KFDlrlYv~ 360 (662)
T KOG2156|consen 329 QFPKDRPLVVQKYIERPLLINGSKFDLRLYVV 360 (662)
T ss_pred hCCCcccHHHHHHhhcceeecCcceeEEEEEE
No 140
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=24.48 E-value=48 Score=34.48 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKG 541 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg 541 (771)
|+.+|+.+.. .+ ..=| .||||+=.|++.||++++.+
T Consensus 36 A~~l~~~L~~----~~-------~~~d-~i~sSpL~Ra~qTA~~i~~~ 71 (228)
T PRK14116 36 AKKAGRLIKE----AG-------LEFD-QAYTSVLTRAIKTLHYALEE 71 (228)
T ss_pred HHHHHHHHHh----cC-------CCCC-EEEECChHHHHHHHHHHHHh
Confidence 8888888761 01 1113 49999999999999998764
No 141
>KOG1382 consensus Multiple inositol polyphosphate phosphatase [General function prediction only]
Probab=23.74 E-value=69 Score=37.56 Aligned_cols=50 Identities=24% Similarity=0.189 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccc-cceEeecCCchhHhhHHHHHhhhhcccCCCCc
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRH-DLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTP 551 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rh-DlKIysSdEgRVq~TAaaFakg~L~legeltP 551 (771)
|.++||+|= .+. |.-|-- -.-|++|.--||..||++||-||..-.+-.-|
T Consensus 141 a~R~~r~f~------~~y--~~~~n~~~y~i~tt~~~R~~dSA~~F~~GLfg~~~~~~t 191 (467)
T KOG1382|consen 141 AKRLARRFP------ALY--YELENPTVYNINTTASQRVVDSAQAFAYGLFGEDHFNIT 191 (467)
T ss_pred HHHHHHHHH------HHH--HhhcCCceEEeeccchHHHHHHHHHHHhhhccccccCCC
Confidence 778888775 111 111111 12488999999999999999999987776555
No 142
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=23.66 E-value=53 Score=34.08 Aligned_cols=36 Identities=8% Similarity=-0.083 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKG 541 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg 541 (771)
|+.||+.|+-. + ..-| .||||+=.|++.||+++++.
T Consensus 36 A~~l~~~L~~~----~-------~~~d-~i~sSpL~Ra~~TA~~i~~~ 71 (228)
T PRK14119 36 ATRAGEKVREN----N-------IAID-VAFTSLLTRALDTTHYILTE 71 (228)
T ss_pred HHHHHHHHHhc----C-------CCCC-EEEeCccHHHHHHHHHHHHh
Confidence 88888877610 0 1112 49999999999999999865
No 143
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=20.87 E-value=92 Score=35.25 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc
Q 004147 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD 155 (771)
Q Consensus 96 DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge 155 (771)
||..-|.+|.++||++|+.+-. |. ++++ |+|+|+-.+-
T Consensus 124 ~~~~~~~lLekAgi~~P~~~~~----Pe-------------eIdr-----~VIVK~pgAk 161 (361)
T COG1759 124 DRKLEYKLLEKAGLRIPKKYKS----PE-------------EIDR-----PVIVKLPGAK 161 (361)
T ss_pred chhhHHHHHHHcCCCCCcccCC----hH-------------HcCC-----ceEEecCCcc
Confidence 6888999999999999987543 32 3454 9999998776
Done!