Query 004147
Match_columns 771
No_of_seqs 189 out of 444
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 15:46:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t7a_A Inositol pyrophosphate 100.0 1E-122 3E-127 974.6 26.2 323 3-332 4-326 (330)
2 1i7n_A Synapsin II; synapse, p 100.0 2.5E-28 8.5E-33 258.5 14.8 203 71-313 88-302 (309)
3 2p0a_A Synapsin-3, synapsin II 99.9 7.9E-28 2.7E-32 258.1 14.4 205 72-316 106-322 (344)
4 1pk8_A RAT synapsin I; ATP bin 99.9 8.7E-27 3E-31 255.5 14.1 205 71-315 200-416 (422)
5 2q7d_A Inositol-tetrakisphosph 99.9 8.6E-26 2.9E-30 241.5 19.5 274 4-314 16-335 (346)
6 1z2n_X Inositol 1,3,4-trisphos 99.8 1E-20 3.4E-25 195.2 16.4 258 1-299 6-308 (324)
7 1uc8_A LYSX, lysine biosynthes 99.8 2E-20 7E-25 186.8 17.2 237 21-289 11-253 (280)
8 3ln6_A Glutathione biosynthesi 99.8 3.9E-19 1.3E-23 207.3 8.9 183 83-292 471-724 (750)
9 3ln7_A Glutathione biosynthesi 99.8 5E-19 1.7E-23 206.5 8.3 180 86-292 479-730 (757)
10 1gsa_A Glutathione synthetase; 99.7 4.1E-18 1.4E-22 172.7 9.2 196 53-288 76-284 (316)
11 3r5x_A D-alanine--D-alanine li 99.7 1.4E-17 4.7E-22 170.6 10.2 255 23-311 24-300 (307)
12 1iow_A DD-ligase, DDLB, D-ALA\ 99.7 3.5E-16 1.2E-20 158.9 17.1 232 24-289 24-274 (306)
13 4eg0_A D-alanine--D-alanine li 99.6 2.2E-15 7.4E-20 156.3 15.3 240 21-290 32-284 (317)
14 2fb9_A D-alanine:D-alanine lig 99.5 4.4E-14 1.5E-18 147.7 14.6 199 55-289 75-289 (322)
15 2pvp_A D-alanine-D-alanine lig 99.5 1.9E-13 6.4E-18 146.7 17.1 224 56-312 107-346 (367)
16 1e4e_A Vancomycin/teicoplanin 99.5 2.3E-13 8E-18 142.8 16.9 200 56-288 90-308 (343)
17 1ehi_A LMDDL2, D-alanine:D-lac 99.5 1.5E-13 5E-18 147.1 15.1 207 55-288 92-319 (377)
18 3df7_A Putative ATP-grAsp supe 99.5 6.5E-14 2.2E-18 146.2 11.9 172 55-288 68-247 (305)
19 3se7_A VANA; alpha-beta struct 99.5 3.2E-13 1.1E-17 142.4 17.1 199 57-289 91-309 (346)
20 2i87_A D-alanine-D-alanine lig 99.5 1.1E-13 3.8E-18 146.6 12.1 208 56-289 87-310 (364)
21 3k3p_A D-alanine--D-alanine li 99.4 9.2E-13 3.1E-17 142.5 12.1 227 57-312 120-374 (383)
22 3tqt_A D-alanine--D-alanine li 99.4 3.2E-12 1.1E-16 137.6 15.7 229 56-312 98-354 (372)
23 2z04_A Phosphoribosylaminoimid 99.4 4.6E-12 1.6E-16 133.2 16.5 192 56-289 57-254 (365)
24 3ax6_A Phosphoribosylaminoimid 99.4 4.3E-12 1.5E-16 134.4 15.0 187 57-289 63-261 (380)
25 3i12_A D-alanine-D-alanine lig 99.4 6.7E-12 2.3E-16 133.7 16.5 229 56-313 98-354 (364)
26 2pn1_A Carbamoylphosphate synt 99.4 1.6E-12 5.3E-17 134.3 10.9 190 57-288 73-270 (331)
27 3aw8_A PURK, phosphoribosylami 99.4 1.4E-12 4.8E-17 137.5 10.7 195 56-289 59-262 (369)
28 4fu0_A D-alanine--D-alanine li 99.4 1.4E-12 4.8E-17 138.4 10.5 190 72-289 114-316 (357)
29 3e5n_A D-alanine-D-alanine lig 99.4 8.2E-12 2.8E-16 134.8 16.6 213 72-313 134-373 (386)
30 1kjq_A GART 2, phosphoribosylg 99.3 1.2E-12 4.2E-17 138.3 9.3 197 56-288 74-281 (391)
31 2dwc_A PH0318, 433AA long hypo 99.3 2.6E-12 9E-17 138.5 11.5 194 56-289 82-295 (433)
32 2ip4_A PURD, phosphoribosylami 99.3 1.3E-12 4.5E-17 140.2 8.9 200 57-288 62-280 (417)
33 3lwb_A D-alanine--D-alanine li 99.3 8.6E-12 2.9E-16 133.9 14.3 204 57-289 110-334 (373)
34 4dim_A Phosphoribosylglycinami 99.3 5.3E-12 1.8E-16 134.2 9.4 196 57-289 72-279 (403)
35 1vkz_A Phosphoribosylamine--gl 99.3 4.5E-12 1.6E-16 136.6 8.9 204 56-288 70-288 (412)
36 3q2o_A Phosphoribosylaminoimid 99.3 3.6E-11 1.2E-15 128.3 15.4 192 56-290 75-279 (389)
37 2yrx_A Phosphoribosylglycinami 99.3 3.4E-12 1.2E-16 138.9 6.4 207 57-288 84-307 (451)
38 2yw2_A Phosphoribosylamine--gl 99.2 5.6E-12 1.9E-16 135.4 7.3 206 57-289 63-287 (424)
39 2xcl_A Phosphoribosylamine--gl 99.2 2.5E-12 8.5E-17 138.0 4.2 205 57-288 63-286 (422)
40 4ffl_A PYLC; amino acid, biosy 99.2 5.6E-11 1.9E-15 125.1 14.1 176 56-288 63-242 (363)
41 3lp8_A Phosphoribosylamine-gly 99.2 2.3E-11 8E-16 133.1 9.7 192 72-288 98-307 (442)
42 3k5i_A Phosphoribosyl-aminoimi 99.2 1.2E-10 4.3E-15 125.7 14.9 185 71-290 99-292 (403)
43 2qk4_A Trifunctional purine bi 99.2 7.4E-12 2.5E-16 136.1 5.3 206 57-289 89-314 (452)
44 3vot_A L-amino acid ligase, BL 99.2 1.6E-10 5.5E-15 124.3 15.5 179 85-288 101-289 (425)
45 3orq_A N5-carboxyaminoimidazol 99.2 1.8E-10 6.3E-15 123.0 15.4 187 57-290 74-275 (377)
46 4e4t_A Phosphoribosylaminoimid 99.2 2.8E-10 9.7E-15 123.9 16.3 190 56-289 96-303 (419)
47 2w70_A Biotin carboxylase; lig 99.2 3E-11 1E-15 130.8 8.1 196 57-289 75-292 (449)
48 3eth_A Phosphoribosylaminoimid 99.2 3.8E-10 1.3E-14 121.2 16.2 189 56-289 42-242 (355)
49 3mjf_A Phosphoribosylamine--gl 99.2 3.2E-11 1.1E-15 131.5 7.9 193 72-289 82-293 (431)
50 1ulz_A Pyruvate carboxylase N- 99.1 8.6E-11 3E-15 127.3 8.8 195 57-289 74-291 (451)
51 3ouz_A Biotin carboxylase; str 99.1 1.2E-10 4.1E-15 126.4 9.5 195 57-289 79-296 (446)
52 2vpq_A Acetyl-COA carboxylase; 99.1 9.7E-11 3.3E-15 126.9 8.3 198 56-289 73-292 (451)
53 2r85_A PURP protein PF1517; AT 99.1 1.5E-10 5.2E-15 118.9 9.0 175 74-288 78-286 (334)
54 2dzd_A Pyruvate carboxylase; b 99.0 2E-10 7E-15 124.9 8.0 197 57-290 80-297 (461)
55 3n6r_A Propionyl-COA carboxyla 99.0 1.5E-09 5.2E-14 125.6 13.0 197 57-290 75-293 (681)
56 3vmm_A Alanine-anticapsin liga 99.0 2.4E-09 8.1E-14 118.8 12.1 194 57-288 103-329 (474)
57 1a9x_A Carbamoyl phosphate syn 98.9 2.1E-09 7.3E-14 129.8 11.0 196 56-288 82-302 (1073)
58 3u9t_A MCC alpha, methylcroton 98.9 1.3E-09 4.5E-14 126.0 7.0 199 57-290 101-319 (675)
59 3glk_A Acetyl-COA carboxylase 98.9 1.7E-09 5.9E-14 122.0 6.9 194 73-289 140-364 (540)
60 2qf7_A Pyruvate carboxylase pr 98.9 9.5E-09 3.3E-13 125.3 13.3 196 57-289 94-312 (1165)
61 3jrx_A Acetyl-COA carboxylase 98.9 2.6E-09 8.8E-14 122.0 7.8 195 73-290 156-381 (587)
62 1w96_A ACC, acetyl-coenzyme A 98.8 1.6E-09 5.5E-14 121.7 6.0 206 57-288 131-370 (554)
63 1a9x_A Carbamoyl phosphate syn 98.8 6.7E-09 2.3E-13 125.5 11.7 196 57-288 635-844 (1073)
64 3hbl_A Pyruvate carboxylase; T 98.8 1.7E-08 6E-13 122.9 13.7 197 57-289 78-294 (1150)
65 3va7_A KLLA0E08119P; carboxyla 98.8 1.3E-08 4.4E-13 124.8 12.0 195 57-288 104-320 (1236)
66 2pbz_A Hypothetical protein; N 98.5 7.1E-07 2.4E-11 95.1 12.7 170 78-288 80-267 (320)
67 2r7k_A 5-formaminoimidazole-4- 98.0 2.4E-05 8.2E-10 84.4 10.8 178 79-288 107-313 (361)
68 2cqy_A Propionyl-COA carboxyla 97.5 3.4E-07 1.2E-11 79.5 -10.8 96 92-217 4-108 (108)
69 1dkq_A Phytase; histidine acid 97.4 0.00021 7.2E-09 77.6 7.4 54 489-546 44-108 (410)
70 1wr2_A Hypothetical protein PH 97.2 1.3E-05 4.5E-10 80.5 -4.5 101 94-219 19-130 (238)
71 1nd6_A Prostatic acid phosphat 95.6 0.023 7.8E-07 59.3 8.0 51 491-547 40-96 (354)
72 2io8_A Bifunctional glutathion 94.1 0.072 2.5E-06 61.6 7.5 113 77-229 479-601 (619)
73 3it3_A Acid phosphatase; HAP, 94.0 0.031 1.1E-06 59.4 3.8 52 494-548 48-102 (342)
74 1qwo_A Phytase; alpha barrel, 93.6 0.033 1.1E-06 60.7 3.4 60 489-557 101-175 (442)
75 2gfi_A Phytase; hydrolase; HET 93.5 0.069 2.4E-06 58.8 5.7 47 494-548 137-185 (458)
76 3k4q_A 3-phytase A; PHYA, 3-ph 93.2 0.065 2.2E-06 59.2 4.9 48 491-547 107-159 (444)
77 1qfx_A Protein (PH 2.5 acid ph 92.5 0.064 2.2E-06 59.2 3.6 47 492-546 121-172 (460)
78 2wnh_A 3-phytase; histidine ac 92.2 0.05 1.7E-06 59.2 2.2 53 491-547 58-117 (418)
79 2fp4_B Succinyl-COA ligase [GD 91.5 0.051 1.7E-06 59.5 1.2 43 97-152 5-48 (395)
80 2nu8_B SCS-beta, succinyl-COA 90.9 0.29 9.9E-06 53.3 6.5 46 96-154 4-50 (388)
81 3it3_A Acid phosphatase; HAP, 90.2 0.12 4.2E-06 54.8 2.8 55 353-418 5-59 (342)
82 3ntl_A Acid glucose-1-phosphat 89.9 0.17 5.7E-06 55.4 3.5 50 494-547 55-109 (398)
83 1nd6_A Prostatic acid phosphat 87.2 0.27 9.2E-06 51.2 2.8 20 355-374 2-21 (354)
84 3ufx_B Succinyl-COA synthetase 86.6 0.48 1.6E-05 51.8 4.4 43 98-153 6-48 (397)
85 3ntl_A Acid glucose-1-phosphat 84.4 0.45 1.5E-05 52.0 2.9 19 353-371 4-22 (398)
86 3tig_A TTL protein; ATP-grAsp, 84.2 0.26 8.9E-06 54.0 0.9 114 84-217 64-210 (380)
87 2wnh_A 3-phytase; histidine ac 82.2 0.74 2.5E-05 50.0 3.5 22 352-373 12-33 (418)
88 3n6x_A Putative glutathionylsp 80.4 0.76 2.6E-05 51.7 2.9 82 146-244 364-466 (474)
89 3eoz_A Putative phosphoglycera 72.0 2 6.7E-05 42.1 2.9 37 494-542 53-91 (214)
90 1ujc_A Phosphohistidine phosph 70.8 2.9 9.9E-05 39.1 3.6 37 494-542 31-67 (161)
91 3mxo_A Serine/threonine-protei 69.7 3.2 0.00011 39.9 3.8 37 494-542 41-77 (202)
92 3gp3_A 2,3-bisphosphoglycerate 67.7 3.6 0.00012 41.0 3.8 37 494-542 44-80 (257)
93 3kkk_A Phosphoglycerate mutase 67.2 3.8 0.00013 40.8 3.8 37 494-542 46-82 (258)
94 3e9c_A ZGC:56074; histidine ph 66.1 4.1 0.00014 41.1 3.8 35 494-542 39-73 (265)
95 2gfi_A Phytase; hydrolase; HET 65.5 3.2 0.00011 45.5 3.2 21 352-372 57-77 (458)
96 1qhf_A Protein (phosphoglycera 64.6 4.5 0.00015 39.9 3.7 37 494-542 35-71 (240)
97 2vob_A Trypanothione synthetas 64.5 7.2 0.00025 45.5 5.9 66 146-228 544-615 (652)
98 1qwo_A Phytase; alpha barrel, 64.4 2.9 9.9E-05 45.5 2.5 21 352-372 45-65 (442)
99 1h2e_A Phosphatase, YHFR; hydr 64.3 4.6 0.00016 39.2 3.7 35 494-542 36-70 (207)
100 3mbk_A Ubiquitin-associated an 64.1 4.7 0.00016 40.4 3.8 37 494-542 66-102 (264)
101 3r7a_A Phosphoglycerate mutase 62.6 4.8 0.00016 39.5 3.5 35 494-542 48-82 (237)
102 2hhj_A Bisphosphoglycerate mut 61.7 5.4 0.00019 40.2 3.8 37 494-542 38-74 (267)
103 3c7t_A Ecdysteroid-phosphate p 61.6 5.5 0.00019 39.9 3.8 37 494-542 68-104 (263)
104 1e58_A Phosphoglycerate mutase 61.4 5.6 0.00019 39.4 3.8 37 494-542 37-73 (249)
105 1qfx_A Protein (PH 2.5 acid ph 60.1 4.6 0.00016 44.4 3.2 21 352-372 50-70 (460)
106 3d8h_A Glycolytic phosphoglyce 59.7 6.2 0.00021 39.9 3.8 37 494-542 55-91 (267)
107 4eo9_A 2,3-bisphosphoglycerate 58.9 6.4 0.00022 39.7 3.7 37 494-542 62-98 (268)
108 3dcy_A Regulator protein; OMIM 58.4 6.2 0.00021 40.0 3.5 35 494-542 44-78 (275)
109 4emb_A 2,3-bisphosphoglycerate 58.3 6.6 0.00022 39.7 3.7 37 494-542 62-98 (274)
110 1yfk_A Phosphoglycerate mutase 58.3 5.3 0.00018 40.2 3.0 37 494-542 38-74 (262)
111 3d4i_A STS-2 protein; PGM, 2H- 57.8 4.9 0.00017 40.4 2.7 37 494-542 75-111 (273)
112 3f2i_A ALR0221 protein; alpha- 53.6 8.9 0.00031 36.8 3.6 36 494-541 33-68 (172)
113 1rii_A 2,3-bisphosphoglycerate 52.2 9.4 0.00032 38.8 3.7 37 494-542 39-75 (265)
114 2rfl_A Putative phosphohistidi 50.3 7.9 0.00027 36.5 2.6 37 494-542 41-77 (173)
115 3hjg_A Putative alpha-ribazole 41.5 12 0.00041 36.5 2.4 21 522-542 51-71 (213)
116 1fzt_A Phosphoglycerate mutase 41.4 12 0.00041 36.1 2.4 37 494-542 42-78 (211)
117 3fjy_A Probable MUTT1 protein; 41.3 18 0.00061 38.2 3.9 35 494-542 216-250 (364)
118 2kxe_A DNA polymerase II small 40.6 17 0.00057 31.0 2.8 40 62-111 28-68 (75)
119 2a6p_A Possible phosphoglycera 36.1 22 0.00076 34.4 3.4 32 494-537 45-76 (208)
120 2qni_A AGR_C_517P, uncharacter 36.0 13 0.00045 36.7 1.7 35 494-542 53-87 (219)
121 1v37_A Phosphoglycerate mutase 33.2 18 0.00062 34.2 2.1 15 523-537 47-61 (177)
122 3f3k_A Uncharacterized protein 26.1 23 0.0008 35.4 1.6 42 494-542 40-81 (265)
123 4hbz_A Putative phosphohistidi 23.1 29 0.00099 33.7 1.6 34 494-539 49-82 (186)
No 1
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=100.00 E-value=1e-122 Score=974.61 Aligned_cols=323 Identities=57% Similarity=1.048 Sum_probs=310.1
Q ss_pred CCCeeEEEEeecCCccCChhHHHHHHHHhhcCCeEEEEeCccccccCCCCCCCccceeeccccCCCChHHHHHHHHhcCC
Q 004147 3 VHKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLEKAESYATLRKP 82 (771)
Q Consensus 3 ~~~~~~iGvCam~~Ka~SkPm~~IL~rl~~~~~f~~iiF~d~~IL~~~ve~WP~cd~lIsf~s~GfpL~kai~y~~lr~p 82 (771)
..++++|||||||+||+|||||+||+||.++++||+|||+|++|||+|||+||+|||||||||+||||+|||+|+++|+|
T Consensus 4 ~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr~p 83 (330)
T 3t7a_A 4 TERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNP 83 (330)
T ss_dssp --CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHHCC
T ss_pred CCCceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHHhCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 004147 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (771)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 162 (771)
|+|||+.+|.++|||+++|++|+++|||+|+|++++++.+......+++.+|+|+++|++++||||+||++|||||||||
T Consensus 84 ~~INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv~Gsdhni~iy 163 (330)
T 3t7a_A 84 FVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIY 163 (330)
T ss_dssp EESBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEESBTTCCCCEEE
T ss_pred ceeCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEcccccccCcceee
Confidence 99999999999999999999999999999999999998544445689999999999999999999999999999999999
Q ss_pred eccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCC
Q 004147 163 YPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGK 242 (771)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gk 242 (771)
||+++||||+|||||+||+||+|+|++ .+|++++|||||||+++|+||||||||++|||||+|+||++||+||||+|||
T Consensus 164 yp~s~GgG~~RLfrki~n~sS~~~~~~-~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~sp~~~G~~r~N~~gG 242 (330)
T 3t7a_A 164 YPTSAGGGSQRLFRKIGSRSSVYSPES-NVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGK 242 (330)
T ss_dssp CCGGGTCCEEEEEEEETTEEEEEESCC-SCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEECTTSSCBCCBCTTSC
T ss_pred cccccCCchhhhhhhhCCcccccChhh-hhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeCCCCCCcEEEcCCCC
Confidence 999999999999999999999999987 6799999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeCCHHHHHHHHHHHHHhcCceeeEeEEeeCCCcEEEecCCccccccccccHHHHHHHHHHHHHHhhCCCCCCCC
Q 004147 243 EVRYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAKAPHLSSAI 322 (771)
Q Consensus 243 e~r~pv~Lt~eEk~iA~ka~~afgq~VcGfDLLRs~g~syVcDVNGwSFVK~n~kYYddca~iL~~~~l~~~~~~~~~~~ 322 (771)
|+|++|+||+||++||.|||+||||+||||||||++++|||||||||||||+|.+|||+||+|||.+|+++++|+.
T Consensus 243 ~~~~~v~Lt~eek~iA~kaa~a~G~~v~GVDlLrs~~~~~V~EVNg~~fvk~~~~yyd~~a~il~~~~~~~~~~~~---- 318 (330)
T 3t7a_A 243 EVRYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAKILGNIVMRELAPQF---- 318 (330)
T ss_dssp BCCEECCCCHHHHHHHHHHHHHTTBSEEEEEEEEETTEEEEEEEEESCCCSSCHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ceeeeecCCHHHHHHHHHHHHHhCCceEEEEEEEECCccEEEEeCCCccccCchhHHHHHHHHHHHHHHHHhCccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCC
Q 004147 323 PPILPWKVNE 332 (771)
Q Consensus 323 ~~~~~~~~~~ 332 (771)
++||+.+.
T Consensus 319 --~~~~~~~~ 326 (330)
T 3t7a_A 319 --HIPWSIPL 326 (330)
T ss_dssp --TCCCCC--
T ss_pred --CCcccCCC
Confidence 56776543
No 2
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.95 E-value=2.5e-28 Score=258.52 Aligned_cols=203 Identities=15% Similarity=0.159 Sum_probs=156.7
Q ss_pred HHHHHHHHhcCCcccCCchhhhHhhhH----HHHHHHHHhCCC---CCCCEEEEeccCCCccccccccccceeeecCeec
Q 004147 71 EKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF 143 (771)
Q Consensus 71 ~kai~y~~lr~p~~iNdl~~q~~l~DR----~~~~qiL~~~gI---P~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~ 143 (771)
..++++++.+|.+++|++.+...++|| ..++++|++.|+ |+|.+.+... + .+.++ .+
T Consensus 88 r~vl~~le~~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~~~--~----------~~~~~----~~ 151 (309)
T 1i7n_A 88 RHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPN--H----------REMLT----LP 151 (309)
T ss_dssp HHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESS--G----------GGGSS----CC
T ss_pred HHHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEeeCC--h----------hhhhh----cc
Confidence 366788999999999999999999999 788999999999 9555544421 1 22332 24
Q ss_pred cCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeE
Q 004147 144 WKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAH 222 (771)
Q Consensus 144 ~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-~~gsyIyEEFi~t~G~DIKVytVG~~~vh 222 (771)
++|+|+||.+|+ +|-|+. |.+ ++.+.-+- +..++ .+..++.||||+ .|.||||++||++++
T Consensus 152 g~PvVvK~~~Gs-----------~G~GV~-lv~---~~~~~~~~-~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~v~- 213 (309)
T 1i7n_A 152 TFPVVVKIGHAH-----------SGMGKV-KVE---NHYDFQDI-ASVVALTQTYATAEPFID-AKYDIRVQKIGNNYK- 213 (309)
T ss_dssp CSSEEEEESSCS-----------TTTTEE-EEC---SHHHHHHH-HHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEE-
T ss_pred CCCEEEEeCCCC-----------ceeCeE-EEC---CHHHHHHH-HHHHhccCCeEEEEeecC-CCceEEEEEECCEEE-
Confidence 589999999999 888874 444 33322110 11222 345567899999 699999999999987
Q ss_pred EEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh-cCceeeEeEEeeCCC-cEEEecCC--cccccccccc
Q 004147 223 AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGR-SYVCDVNG--WSFVKNSYKY 298 (771)
Q Consensus 223 Ae~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~af-gq~VcGfDLLRs~g~-syVcDVNG--wSFVK~n~kY 298 (771)
|+.|+|+ .|.|++|.+ ++...++.||++++++|.+|+++| |+.+||||||++.+| +||||||+ .++.++...
T Consensus 214 a~~Rr~~--~g~wrtN~~-~~~~e~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~~g~~~V~EVN~~~~P~~~~~~~- 289 (309)
T 1i7n_A 214 AYMRTSI--SGNWKTNTG-SAMLEQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQV- 289 (309)
T ss_dssp EEEEESS--CTTTSCSCC-CSSEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCSSCHH-
T ss_pred EEEEEcC--CCCCeecCC-cceeeecCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhh-
Confidence 7777787 899999996 567789999999999999999999 799999999999776 58999999 999886654
Q ss_pred HHHHHHHHHHHHHHh
Q 004147 299 YDDAACVLRKMFLEA 313 (771)
Q Consensus 299 Yddca~iL~~~~l~~ 313 (771)
+.+.-+..+++..
T Consensus 290 --~~~~~ia~~ii~~ 302 (309)
T 1i7n_A 290 --EDRQLITDLVISK 302 (309)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHH
Confidence 4444444444444
No 3
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.95 E-value=7.9e-28 Score=258.12 Aligned_cols=205 Identities=15% Similarity=0.171 Sum_probs=157.2
Q ss_pred HHHHHHHhcCCcccCCchhhhHhhhH----HHHHHHHHhCCC---CCCCEEEEeccCCCccccccccccceeeecCeecc
Q 004147 72 KAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFW 144 (771)
Q Consensus 72 kai~y~~lr~p~~iNdl~~q~~l~DR----~~~~qiL~~~gI---P~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~ 144 (771)
.++++++..|.++||++.++..++|| ..++++|.+.|+ |+|.+.+... + .+.++ .++
T Consensus 106 ~vl~~le~~GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~~--~----------~~~~~----~~g 169 (344)
T 2p0a_A 106 SLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPN--H----------KPMVT----APH 169 (344)
T ss_dssp HHHHHHHHTTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEESS--S----------TTCCC----CSS
T ss_pred HHHHHHHHCCceecCCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEecCc--h----------hhhhh----ccC
Confidence 56788999999999999999999999 889999999999 9555554421 1 23333 245
Q ss_pred CcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeEE
Q 004147 145 KPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAHA 223 (771)
Q Consensus 145 kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-~~gsyIyEEFi~t~G~DIKVytVG~~~vhA 223 (771)
+|+|+||++|+ +|-|+. |.+ |+.+.-+- +..++ .+..|+.||||+ .|+||||++||++++ |
T Consensus 170 ~PvVvK~~~Gs-----------~G~GV~-lve---~~~~~~~~-~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~vv-a 231 (344)
T 2p0a_A 170 FPVVVKLGHAH-----------AGMGKI-KVE---NQLDFQDI-TSVVAMAKTYATTEAFID-SKYDIRIQKIGSNYK-A 231 (344)
T ss_dssp SSEEEEESSCC-----------TTTTEE-EEC---SHHHHHHH-HHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEE-E
T ss_pred CCEEEEeCCCC-----------ceeCeE-EEC---CHHHHHHH-HHHHhccCCeEEEEeccC-CCccEEEEEECCEEE-E
Confidence 89999999999 888874 444 33322110 01222 344566899999 699999999999998 6
Q ss_pred EeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh-cCceeeEeEEeeCCC-cEEEecCC--ccccccccccH
Q 004147 224 EARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGR-SYVCDVNG--WSFVKNSYKYY 299 (771)
Q Consensus 224 e~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~af-gq~VcGfDLLRs~g~-syVcDVNG--wSFVK~n~kYY 299 (771)
+.|+|+ .|.|++|.+ ++...++.||++++++|.+++++| |+.|||||||++.++ .||||||+ -++.++..
T Consensus 232 ~~R~~~--~g~wrtN~~-~~~~e~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~~G~~~VlEVN~~~~P~~~~~~--- 305 (344)
T 2p0a_A 232 YMRTSI--SGNWKANTG-SAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHV--- 305 (344)
T ss_dssp EEEEES--SSCSSTTSS-SEEEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCGGGH---
T ss_pred EEEecC--CCCCeecCC-ceEEEeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEEcCCCCCcccchh---
Confidence 666676 899999996 577789999999999999999999 799999999999776 58999999 56665433
Q ss_pred HHHHHHHHHHHHHhhCC
Q 004147 300 DDAACVLRKMFLEAKAP 316 (771)
Q Consensus 300 ddca~iL~~~~l~~~~~ 316 (771)
.+++.-+-..+++.+..
T Consensus 306 ~~~~~~Ia~~ii~~i~~ 322 (344)
T 2p0a_A 306 EEDRQLMADLVVSKMSQ 322 (344)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 46665566666666533
No 4
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.94 E-value=8.7e-27 Score=255.50 Aligned_cols=205 Identities=17% Similarity=0.185 Sum_probs=156.7
Q ss_pred HHHHHHHHhcCCcccCCchhhhHhhhH----HHHHHHHHhCCC---CCCCEEEEeccCCCccccccccccceeeecCeec
Q 004147 71 EKAESYATLRKPFLVNELEPQHLLHDR----RKVYEQLEKYGI---PVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF 143 (771)
Q Consensus 71 ~kai~y~~lr~p~~iNdl~~q~~l~DR----~~~~qiL~~~gI---P~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~ 143 (771)
..++.+++..+.++||++.++..++|| ..++++|.+.|+ |+|.+.+... ..+.+. .+
T Consensus 200 r~vlr~lE~~GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~~~~------------~~~~i~----~~ 263 (422)
T 1pk8_A 200 RSLVIGLQYAGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPN------------HKEMLS----ST 263 (422)
T ss_dssp HHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESS------------GGGCCC----CS
T ss_pred HHHHHHHHHCCccccCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEecCc------------hhhhhh----cc
Confidence 366888999999999999999999999 788999999999 8444444421 122333 25
Q ss_pred cCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-cCcceEEeeccCCCCceeEEEEECCceeE
Q 004147 144 WKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-REGSYIYEEFMPTGGTDVKVYTVGPEYAH 222 (771)
Q Consensus 144 ~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-~~gsyIyEEFi~t~G~DIKVytVG~~~vh 222 (771)
++|+|+||++|+ +|-|+. |.+ ++...-+ -+..++ .+..|+.||||+ .|+||||+|||++++
T Consensus 264 g~PvVvKp~~GS-----------~G~GV~-lve---~~~~l~~-ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~vv- 325 (422)
T 1pk8_A 264 TYPVVVKMGHAH-----------SGMGKV-KVD---NQHDFQD-IASVVALTKTYATAEPFID-AKYDVRVQKIGQNYK- 325 (422)
T ss_dssp SSSEEEEESSCC-----------TTTTEE-EEC---SHHHHHH-HHHHHHHHTSCEEEEECCC-EEEEEEEEEETTEEE-
T ss_pred CCCEEEEeCCCC-----------ceeCeE-EeC---CHHHHHH-HHHHHhccCceEEEEeecC-CCceEEEEEECCEEE-
Confidence 689999999999 888874 444 3332211 011222 345566899999 699999999999998
Q ss_pred EEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHh-cCceeeEeEEeeCCC-cEEEecCC--cccccccccc
Q 004147 223 AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAF-RQAVCGFDLLRCEGR-SYVCDVNG--WSFVKNSYKY 298 (771)
Q Consensus 223 Ae~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~af-gq~VcGfDLLRs~g~-syVcDVNG--wSFVK~n~kY 298 (771)
|+.|+++ .|.|++|++ ++...++.||++++++|.+++++| |++|||||||++.++ .||||||+ -++.++..
T Consensus 326 a~~Rr~~--~g~WrtNvg-~g~~e~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~dG~~~VlEVN~s~~P~~~g~~-- 400 (422)
T 1pk8_A 326 AYMRTSV--SGNWKTNTG-SAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQ-- 400 (422)
T ss_dssp EEEEEES--SSCSSTTSS-CEEEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETTSCEEEEEEECTTCCCCTTCH--
T ss_pred EEEEEcC--CCCceeccC-ceeeeeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchh--
Confidence 6777775 899999996 577789999999999999999999 899999999999766 58999999 56665544
Q ss_pred HHHHHHHHHHHHHHhhC
Q 004147 299 YDDAACVLRKMFLEAKA 315 (771)
Q Consensus 299 Yddca~iL~~~~l~~~~ 315 (771)
.+++.-+-++++..+.
T Consensus 401 -~~~~~~IA~~ii~~i~ 416 (422)
T 1pk8_A 401 -DEDKQLIVELVVNKMT 416 (422)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHH
Confidence 3556555666665553
No 5
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.94 E-value=8.6e-26 Score=241.54 Aligned_cols=274 Identities=18% Similarity=0.259 Sum_probs=191.3
Q ss_pred CCeeEEEEeecCCccCChhHHHHHHHHhhcCCeEEEEeCccccccCCCCCCCccceeeccccCCCC------------hH
Q 004147 4 HKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYP------------LE 71 (771)
Q Consensus 4 ~~~~~iGvCam~~Ka~SkPm~~IL~rl~~~~~f~~iiF~d~~IL~~~ve~WP~cd~lIsf~s~Gfp------------L~ 71 (771)
.+..+||.|--.||.++--.+.+++-+.+.| ++++.+.-.. +......+|+.|......++ +.
T Consensus 16 ~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G-~~~~~iD~~~----~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~ 90 (346)
T 2q7d_A 16 LKGKRVGYWLSEKKIKKLNFQAFAELCRKRG-MEVVQLNLSR----PIEEQGPLDVIIHKLTDVILEADQNDSQSLELVH 90 (346)
T ss_dssp GTTCEEEEECCHHHHHHHTHHHHHHHHHTTT-CEEEECCTTS----CSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHH
T ss_pred cCceEEEEEECcccchhhhHHHHHHHHHhCC-cEEEEccccc----chhhcCCCCEEEeCCcccccccccCchhHHHHHH
Confidence 3567899999999988887788888887766 6777665432 33344678888876543211 22
Q ss_pred HHHHHHH-hcCCcccCCchhhhHhhhHHHHHHHHHhC-------CCCCCCEEEEeccCCCccccccccccceeeecCeec
Q 004147 72 KAESYAT-LRKPFLVNELEPQHLLHDRRKVYEQLEKY-------GIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRF 143 (771)
Q Consensus 72 kai~y~~-lr~p~~iNdl~~q~~l~DR~~~~qiL~~~-------gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~ 143 (771)
...+|.. ..+.++||+...+..++||..++++|++. |||+|+|+++.+..+. +..+.+...+ +
T Consensus 91 ~l~~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~-------~~~~~~~~~~--l 161 (346)
T 2q7d_A 91 RFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGD-------DTMRLLEKNG--L 161 (346)
T ss_dssp HHHHHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCT-------THHHHHHHTT--C
T ss_pred HHHHHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHH-------HHHHHHHhcC--C
Confidence 2333333 34789999999999999999999999997 9999999999753111 1112222122 5
Q ss_pred cCcEEEeecccc---CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCce
Q 004147 144 WKPFVEKPVHGD---DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEY 220 (771)
Q Consensus 144 ~kPfVeKpv~Ge---dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~ 220 (771)
+.|+|+||+.|+ -|++.+ +.+.+. +. . .+..+++||||+.+|.|+||||||+.+
T Consensus 162 g~P~VvKP~~g~Gs~s~~v~~----------------v~~~~~-l~----~--~~~~~lvQefI~~~G~dirv~VvG~~v 218 (346)
T 2q7d_A 162 TFPFICKTRVAHGTNSHEMAI----------------VFNQEG-LN----A--IQPPCVVQNFINHNAVLYKVFVVGESY 218 (346)
T ss_dssp CSSEEEECSBCSSTTCCEEEE----------------ECSGGG-TT----C----CCEEEEECCCCTTEEEEEEEETTEE
T ss_pred CCCEEEEecCCCcceeeeeEE----------------ecCHHH-HH----h--cCCCEEEEEeeCCCCeEEEEEEECCEE
Confidence 689999999763 222222 222211 11 1 245699999999899999999999999
Q ss_pred eEEEeeeCCCCC-C-------eeee-cCC-CCceee---------eeeC--CHHHHHHHHHHHHHhcCceeeEeEEeeC-
Q 004147 221 AHAEARKSPVVD-G-------VVMR-NPD-GKEVRY---------PVLL--TPNEKQMAREVCIAFRQAVCGFDLLRCE- 278 (771)
Q Consensus 221 vhAe~RKSP~~D-G-------~vrr-N~~-gke~r~---------pv~L--t~eEk~iA~ka~~afgq~VcGfDLLRs~- 278 (771)
++++.|..|.+. | .|.+ |.+ +|..++ ...+ +++.+++|.++++++|++++|||++++.
T Consensus 219 ~~~~r~sl~~~~~~~~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~ 298 (346)
T 2q7d_A 219 TVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQ 298 (346)
T ss_dssp EEEEEECCCCCC----CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTT
T ss_pred EEEEEecCCCcCcCccccccccccceeeccCCccccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecC
Confidence 988666554210 1 2332 323 343321 2333 4688999999999999999999999985
Q ss_pred -CCcEEEecCCccccccccccHHHHHHHHHHHHHHhh
Q 004147 279 -GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLEAK 314 (771)
Q Consensus 279 -g~syVcDVNGwSFVK~n~kYYddca~iL~~~~l~~~ 314 (771)
|++||+|||.|+=.++-.+|...+.++|.+.+.+.-
T Consensus 299 ~g~~~VlEVN~~PG~~g~~~~~~~i~~~l~~~~~~~~ 335 (346)
T 2q7d_A 299 TGQHAVIDINAFPGYEGVSEFFTDLLNHIATVLQGQS 335 (346)
T ss_dssp TCCEEEEEEEESCCCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCccccccchHHHHHHHHHHHHhhccC
Confidence 679999999999899888898888887777665443
No 6
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.85 E-value=1e-20 Score=195.23 Aligned_cols=258 Identities=17% Similarity=0.214 Sum_probs=165.6
Q ss_pred CCCCCeeEEEEeecCCccCChhHHHHHHHHhhcCCeEE--EEeCccccccCCCCCCC-ccceeeccccCCC-ChHHHHHH
Q 004147 1 MEVHKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEV--IHFGDKVILEDPIEKWP-ICDCLIAFYSSGY-PLEKAESY 76 (771)
Q Consensus 1 ~~~~~~~~iGvCam~~Ka~SkPm~~IL~rl~~~~~f~~--iiF~d~~IL~~~ve~WP-~cd~lIsf~s~Gf-pL~kai~y 76 (771)
|...+..+|||+.-+++. |- .+...+.+.| +++ +++.-.. |...+- .+|+.+.....-+ -+..+++.
T Consensus 6 ~~~~~~m~i~il~~~~~~-s~---~l~~al~~~G-~~v~~~~~d~~~----~~~~~~~~~d~v~~~~~~~~~~~~~~l~~ 76 (324)
T 1z2n_X 6 MTTKQTVSLFIWLPESKQ-KT---LFISTKNHTQ-FELNNIIFDVTL----STELPDKEPNAIITKRTHPVGKMADEMRK 76 (324)
T ss_dssp ----CEEEEEEECCHHHH-HH---HBSSCCSEEE-EEETTEEEEEEE----ESSCCSSCCSEEEECCSCSSSHHHHHHHH
T ss_pred cccCCcEEEEEEEchhhh-hh---hHHHHHHhcC-cEEEEEEecCCC----CccccCCCceEEEEeccchHHHHHHHHHH
Confidence 455667899998855543 21 3333333333 777 7665421 222221 4676664432211 12344444
Q ss_pred HHh--cCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc
Q 004147 77 ATL--RKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 154 (771)
Q Consensus 77 ~~l--r~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G 154 (771)
+.. .+..++|+.....++.||..++++|+++|||+|++.++.+. . +..+.+.-.| +++|+|+||..|
T Consensus 77 ~~~~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~~~~~~--~-------~~~~~~~~~~--~~~P~vvKP~~g 145 (324)
T 1z2n_X 77 YEKDHPKVLFLESSAIHDMMSSREEINALLIKNNIPIPNSFSVKSK--E-------EVIQLLQSKQ--LILPFIVKPENA 145 (324)
T ss_dssp HHHHCTTSEEETCHHHHHHHTBHHHHHHHHHHTTCCCSCEEEESSH--H-------HHHHHHHTTC--SCSSEEEEESBC
T ss_pred HHHhCCCCeEeCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEeCCH--H-------HHHHHHHHcC--CCCCEEEeeCCC
Confidence 433 66678999999999999999999999999999999998642 0 1111221111 458999999998
Q ss_pred cCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCC-C--
Q 004147 155 DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPV-V-- 231 (771)
Q Consensus 155 edHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~-~-- 231 (771)
. .|.|.. -...+.+.+ .+. . .+..+|+||||+..|.|++|+++|+++.+++ |+++. +
T Consensus 146 ~-----------g~~~s~-gv~~v~~~~-~l~----~--~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~-~~~~~~~~~ 205 (324)
T 1z2n_X 146 Q-----------GTFNAH-QMKIVLEQE-GID----D--IHFPCLCQHYINHNNKIVKVFCIGNTLKWQT-RTSLPNVHR 205 (324)
T ss_dssp S-----------SSSGGG-EEEEECSGG-GGT----T--CCSSEEEEECCCCTTCEEEEEEETTEEEEEE-ECCCCCCCC
T ss_pred C-----------CCccce-eeEEEeCHH-HHh----h--cCCCEEEEEccCCCCcEEEEEEECCEEEEEE-ecCcccccC
Confidence 5 120111 111122211 111 1 3567999999998899999999999999985 55541 1
Q ss_pred ---------------------------------CCeeeecCCCCceeeeeeCC-HHHHHHHHHHHHHhcCceeeEeEEee
Q 004147 232 ---------------------------------DGVVMRNPDGKEVRYPVLLT-PNEKQMAREVCIAFRQAVCGFDLLRC 277 (771)
Q Consensus 232 ---------------------------------DG~vrrN~~gke~r~pv~Lt-~eEk~iA~ka~~afgq~VcGfDLLRs 277 (771)
.+.|+.|.+. +...+..++ ++.+++|.++++++|..+||||++..
T Consensus 206 g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~vD~~~~ 284 (324)
T 1z2n_X 206 CGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILE-DPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKE 284 (324)
T ss_dssp SSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCS-CTTTTTSCCHHHHHHHHHHHHHHHTCSEEEEEEECG
T ss_pred CCccceeeccccchhhhccccccccccccccccccchhhcccc-CCccccCCCHHHHHHHHHHHHHHhCCcEEeeEEEEE
Confidence 1346667664 334577888 79999999999999999999999987
Q ss_pred -C-CCcEEEecCCccccccccccH
Q 004147 278 -E-GRSYVCDVNGWSFVKNSYKYY 299 (771)
Q Consensus 278 -~-g~syVcDVNGwSFVK~n~kYY 299 (771)
. |.+||+|||..+-...-..|.
T Consensus 285 ~~~g~~~vlEvN~~Pg~~~~~~~~ 308 (324)
T 1z2n_X 285 NEQGNPLVVDVNVFPSYGGKVDFD 308 (324)
T ss_dssp GGCSSCEEEEEEESCCTTSCBCHH
T ss_pred cCCCCEEEEEEcCCCCcCCCCCHH
Confidence 4 669999999554444445554
No 7
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.84 E-value=2e-20 Score=186.84 Aligned_cols=237 Identities=20% Similarity=0.207 Sum_probs=159.9
Q ss_pred hhHHHHHHHHhhcCCeEEEEeCcccc-cc--CCCCCCCccc-eeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhh
Q 004147 21 APMGQILDRLQAFGEFEVIHFGDKVI-LE--DPIEKWPICD-CLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHD 96 (771)
Q Consensus 21 kPm~~IL~rl~~~~~f~~iiF~d~~I-L~--~~ve~WP~cd-~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~D 96 (771)
...+.+...+.+.| ++++++...-. .. .....|+.+| +++..++ ++....+.++++..+..++|+.....+++|
T Consensus 11 ~~~~~~~~a~~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~~d 88 (280)
T 1uc8_A 11 PDERMLFERAEALG-LPYKKVYVPALPMVLGERPKELEGVTVALERCVS-QSRGLAAARYLTALGIPVVNRPEVIEACGD 88 (280)
T ss_dssp HHHHHHHHHHHHHT-CCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSS-HHHHHHHHHHHHHTTCCEESCHHHHHHHHB
T ss_pred HHHHHHHHHHHHcC-CcEEEEehhhceeeccCCCcccCCCCEEEECCcc-chhhHHHHHHHHHCCCceeCCHHHHHHhCC
Confidence 44566777777766 66666643211 11 0003477889 6666554 222235667777888777899999999999
Q ss_pred HHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhh
Q 004147 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFR 176 (771)
Q Consensus 97 R~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfr 176 (771)
|..++++|+++|||+|++..+... ++....- ..++.|+|+||..|. .|.|+. +.+
T Consensus 89 K~~~~~~l~~~gi~~p~~~~~~~~------------~~~~~~~-~~~~~p~vvKp~~g~-----------~~~gv~-~v~ 143 (280)
T 1uc8_A 89 KWATSVALAKAGLPQPKTALATDR------------EEALRLM-EAFGYPVVLKPVIGS-----------WGRLLA-XXX 143 (280)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSH------------HHHHHHH-HHHCSSEEEECSBCC-----------BCSHHH-HHH
T ss_pred HHHHHHHHHHcCcCCCCeEeeCCH------------HHHHHHH-HHhCCCEEEEECCCC-----------Ccccce-ecc
Confidence 999999999999999999988642 1111110 124579999999997 566775 444
Q ss_pred hcCCCcccccccccccc--cCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCHHH
Q 004147 177 KVGNRSSEFHPDVRRVR--REGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNE 254 (771)
Q Consensus 177 kign~sS~~~~~~~~~r--~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eE 254 (771)
....-...+.. ...+. .+..+|+||||+..|.|++|+++|++++++..|++ +.|+.|.+.++...|..|+++.
T Consensus 144 ~~~el~~~~~~-~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~----~~~~~~~~~g~~~~p~~l~~~~ 218 (280)
T 1uc8_A 144 XXXXXXXXXXX-KEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRS----AHWITNTARGGQAENCPLTEEV 218 (280)
T ss_dssp HHHC-------------CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC------------------CEECCCCHHH
T ss_pred cccccchhhhh-HhhhcccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEec----CCccccccCCccccCCCCCHHH
Confidence 33222222210 00022 26789999999988999999999999999988863 6799998877777899999999
Q ss_pred HHHHHHHHHHhcCceeeEeEEeeCCCcEEEecCCc
Q 004147 255 KQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGW 289 (771)
Q Consensus 255 k~iA~ka~~afgq~VcGfDLLRs~g~syVcDVNGw 289 (771)
+++|.++++++|..++|||++.+.+++||+|||..
T Consensus 219 ~~~~~~~~~~lg~g~~~vD~~~~~~g~~~iEiN~r 253 (280)
T 1uc8_A 219 ARLSVKAAEAVGGGVVAVDLFESERGLLVNEVNHT 253 (280)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEETT
T ss_pred HHHHHHHHHHhCCCeEEEEEEEeCCCeEEEEEeCC
Confidence 99999999999999999999999778999999953
No 8
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.76 E-value=3.9e-19 Score=207.27 Aligned_cols=183 Identities=19% Similarity=0.231 Sum_probs=139.5
Q ss_pred cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEE
Q 004147 83 FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIY 162 (771)
Q Consensus 83 ~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IY 162 (771)
...+...+...++||..+.++|+++|||+|++.++... ++....-...+++|+|+||..|.
T Consensus 471 tg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~~~~~~~------------~ea~~~~~~~~g~PvVVKP~~G~------- 531 (750)
T 3ln6_A 471 TSKDNYIVPLAMANKVVTKKILDEKHFPTPFGDEFTDR------------KEALNYFSQIQDKPIVVKPKSTN------- 531 (750)
T ss_dssp CTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCCCCEETT------------TTHHHHHHHSSSSCEEEEETTCC-------
T ss_pred eCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCEEEECCH------------HHHHHHHHHhcCCcEEEEeCCCC-------
Confidence 44556667778889999999999999999999988752 12222111234689999999998
Q ss_pred eccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCC---------
Q 004147 163 YPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVD--------- 232 (771)
Q Consensus 163 yp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~D--------- 232 (771)
.|.|+. ++..+.+....-. -+. ..+.+..+|+||||+ |+|++|++||+++++|+.|.+|.+-
T Consensus 532 ----~G~GV~-iv~~~~s~eel~~-a~~~~~~~~~~vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~e 603 (750)
T 3ln6_A 532 ----FGLGIS-IFKTSANLASYEK-AIDIAFTEDSAILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQ 603 (750)
T ss_dssp ----SSSSCE-EESSCCCHHHHHH-HHHHHHHHCSEEEEEECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHH
T ss_pred ----CCCCEE-EEeCCCCHHHHHH-HHHHHHhhCCcEEEEeccC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHH
Confidence 676764 4443333222211 010 112467899999998 8999999999999999999987531
Q ss_pred ---------------------------------------------Ce-----eeecCCCCceeeee--eCCHHHHHHHHH
Q 004147 233 ---------------------------------------------GV-----VMRNPDGKEVRYPV--LLTPNEKQMARE 260 (771)
Q Consensus 233 ---------------------------------------------G~-----vrrN~~gke~r~pv--~Lt~eEk~iA~k 260 (771)
|. +++|.+.|+....+ .++++.+++|.+
T Consensus 604 LI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~~~d~td~i~p~~~~~a~~ 683 (750)
T 3ln6_A 604 LVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSNISTGGDSIDVTNTMDPTYKQLAAE 683 (750)
T ss_dssp HHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCCTTTTCEEEECTTTSCHHHHHHHHH
T ss_pred HHHhhccCccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEEeecccccCCCceeeccccCCHHHHHHHHH
Confidence 22 67899999999998 799999999999
Q ss_pred HHHHhcCceeeEeEEeeC---------CCcEEEecCCcccc
Q 004147 261 VCIAFRQAVCGFDLLRCE---------GRSYVCDVNGWSFV 292 (771)
Q Consensus 261 a~~afgq~VcGfDLLRs~---------g~syVcDVNGwSFV 292 (771)
||+++|+.||||||+..+ ++.+|||||+-+-.
T Consensus 684 aa~~igl~~~GvDli~~di~~~~~~~~~~~~iiEvN~~pg~ 724 (750)
T 3ln6_A 684 MAEAMGAWVCGVDLIIPNATQAYSKDKKNATCIELNFNPLM 724 (750)
T ss_dssp HHHHHTCSSCEEEEEESCSSSCCCTTTTCCEEEEEESSCCC
T ss_pred HHHHhCCCeEEEEEEecCccccccccCCCeEEEEEcCCcch
Confidence 999999999999999874 35589999987644
No 9
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.76 E-value=5e-19 Score=206.51 Aligned_cols=180 Identities=21% Similarity=0.237 Sum_probs=135.3
Q ss_pred CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEecc
Q 004147 86 NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPS 165 (771)
Q Consensus 86 Ndl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~ 165 (771)
++..+..+++||..+.++|+++|||+|++.++... ++.+..-...+++|+|+||..|.
T Consensus 479 ~s~~aa~~~~DK~~tk~lL~~~GIPvP~~~~~~~~------------~ea~~~~~~~~g~PvVVKP~~g~---------- 536 (757)
T 3ln7_A 479 DSYISPLIMENKVVTKKVLQKAGFNVPQSVEFTSL------------EKAVASYALFENRAVVIKPKSTN---------- 536 (757)
T ss_dssp SBSHHHHHHHHSHHHHHHHHHHTCCCCCEEEESCH------------HHHHHGGGGSSSSCEEEEESSCS----------
T ss_pred CHHHHHHHhcCHHHHHHHHHHCCcCCCCEEEECCH------------HHHHHHHHHhcCCCEEEEeCCCC----------
Confidence 44455667789999999999999999999988642 12222111235689999999998
Q ss_pred CCCChHHHHhh-hcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCC------------
Q 004147 166 SAGGGMKELFR-KVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV------------ 231 (771)
Q Consensus 166 ~~GgG~~rLfr-kign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~------------ 231 (771)
.|.|+. ++. ++.+....-. -+. ..+.+..+|+||||+ |+|++|+++|+++++|+.|.+|.|
T Consensus 537 -~G~GV~-iv~~~v~~~eel~~-al~~a~~~~~~vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi 611 (757)
T 3ln7_A 537 -YGLGIT-IFQQGVQNREDFAK-ALEIAFREDKEVMVEDYLV--GTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELV 611 (757)
T ss_dssp -TTTTCE-ECSSCCCCHHHHHH-HHHHHHHHCSSEEEEECCC--SEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHH
T ss_pred -CCCCeE-EecCCCCCHHHHHH-HHHHHHhcCCcEEEEEcCC--CcEEEEEEECCEEEEEEEEecccccCCCcccHHHHH
Confidence 666764 331 1122222111 010 123467899999995 899999999999999999998632
Q ss_pred ------------------------------------------CCe-----eeecCCCCceeeee--eCCHHHHHHHHHHH
Q 004147 232 ------------------------------------------DGV-----VMRNPDGKEVRYPV--LLTPNEKQMAREVC 262 (771)
Q Consensus 232 ------------------------------------------DG~-----vrrN~~gke~r~pv--~Lt~eEk~iA~ka~ 262 (771)
.|. +++|.+.|+....+ .++++.+++|.+|+
T Consensus 612 ~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~aa 691 (757)
T 3ln7_A 612 AMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGIT 691 (757)
T ss_dssp HHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHHH
T ss_pred HhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEeecccccccCccceeccccCCHHHHHHHHHHH
Confidence 233 58899999999999 99999999999999
Q ss_pred HHhcCceeeEeEEeeC---------CCcEEEecCCcccc
Q 004147 263 IAFRQAVCGFDLLRCE---------GRSYVCDVNGWSFV 292 (771)
Q Consensus 263 ~afgq~VcGfDLLRs~---------g~syVcDVNGwSFV 292 (771)
+++|+.||||||+..+ ++..|||||+-+-.
T Consensus 692 ~~lGl~~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~ 730 (757)
T 3ln7_A 692 KAMGAAVCGVDLIIPDLKQPATPNLTSWGVIEANFNPMM 730 (757)
T ss_dssp HHHTCSEEEEEEEESCSSSCCCSSTTTCEEEEEESSCCH
T ss_pred HHhCCCEEEEEEEecCccccccccCCCeEEEEEcCCcch
Confidence 9999999999999882 36689999977644
No 10
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.73 E-value=4.1e-18 Score=172.69 Aligned_cols=196 Identities=14% Similarity=0.149 Sum_probs=144.7
Q ss_pred CCCccceeeccccCCCC-----hHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccc
Q 004147 53 KWPICDCLIAFYSSGYP-----LEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELD 127 (771)
Q Consensus 53 ~WP~cd~lIsf~s~Gfp-----L~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~ 127 (771)
.|..+|+++.....++. ....++.++..+..++|+..+..++.||..++++|+ |+|+|..++..
T Consensus 76 ~~~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~l~----~~P~t~~~~~~------- 144 (316)
T 1gsa_A 76 PLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSD----LTPETLVTRNK------- 144 (316)
T ss_dssp EGGGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEESCHHHHHHCCTTGGGGGGTT----TSCCEEEESCH-------
T ss_pred ccccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEecCHHHHHhhhhHHHHHhhhh----cCCCeEEeCCH-------
Confidence 34557888765433331 224566676788778899999999999999999987 99999988542
Q ss_pred ccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcC-CCcccccccccccc--cCcceEEeecc
Q 004147 128 YFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVG-NRSSEFHPDVRRVR--REGSYIYEEFM 204 (771)
Q Consensus 128 ~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkig-n~sS~~~~~~~~~r--~~gsyIyEEFi 204 (771)
++....- ..++ |+|+||..|. .|-|+.+ +. +. ..+..-+..+. ....+|+||||
T Consensus 145 -----~~~~~~~-~~~~-p~vvKP~~g~-----------~g~Gv~~----v~~~~-~~l~~~~~~~~~~~~~~~lvqe~i 201 (316)
T 1gsa_A 145 -----AQLKAFW-EKHS-DIILKPLDGM-----------GGASIFR----VKEGD-PNLGVIAETLTEHGTRYCMAQNYL 201 (316)
T ss_dssp -----HHHHHHH-HHHS-SEEEECSSCC-----------TTTTCEE----ECTTC-TTHHHHHHHHTTTTTSCEEEEECC
T ss_pred -----HHHHHHH-HHcC-CEEEEECCCC-----------CcccEEE----ecCCh-HHHHHHHHHHHhcCCceEEEeccc
Confidence 1211111 1235 9999999986 4445432 22 11 11110000111 24679999999
Q ss_pred CC-CCceeEEEEECCceeE-EEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHH---hcCceeeEeEEeeCC
Q 004147 205 PT-GGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIA---FRQAVCGFDLLRCEG 279 (771)
Q Consensus 205 ~t-~G~DIKVytVG~~~vh-Ae~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~a---fgq~VcGfDLLRs~g 279 (771)
+. .+.|++|+++|+++++ +..|+++ +|.|+.|.+.|+...|..|+++.+++|.+++++ +|..++|||++
T Consensus 202 ~~~~~~~~~v~~~~g~~~~~~~~r~~~--~~~~~~~~~~gg~~~~~~~~~~~~~~a~~~~~~l~~~g~~~~~vD~~---- 275 (316)
T 1gsa_A 202 PAIKDGDKRVLVVDGEPVPYCLARIPQ--GGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDII---- 275 (316)
T ss_dssp GGGGGCEEEEEEETTEECSEEEEEECC--SSCSCCCGGGTCEEEEEECCHHHHHHHHHHHHHHHHTTCCEEEEEEE----
T ss_pred CCCCCCCEEEEEECCEEeeeEEEEeCC--CCCceeEEccCCccccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEec----
Confidence 97 5899999999999998 9999875 788999999888888999999999999999987 59999999998
Q ss_pred CcEEEecCC
Q 004147 280 RSYVCDVNG 288 (771)
Q Consensus 280 ~syVcDVNG 288 (771)
++||+|||.
T Consensus 276 g~~~iEvN~ 284 (316)
T 1gsa_A 276 GDRLTEINV 284 (316)
T ss_dssp TTEEEEEEC
T ss_pred CCEEEEEcC
Confidence 369999996
No 11
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.71 E-value=1.4e-17 Score=170.60 Aligned_cols=255 Identities=14% Similarity=0.159 Sum_probs=166.2
Q ss_pred HHHHHHHHhhcCCeEEEEeCccccccCCCCCCCccceeeccccCCCChH-HHHHHHHhcCCccc-CCchhhhHhhhHHHH
Q 004147 23 MGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPLE-KAESYATLRKPFLV-NELEPQHLLHDRRKV 100 (771)
Q Consensus 23 m~~IL~rl~~~~~f~~iiF~d~~IL~~~ve~WP~cd~lIsf~s~GfpL~-kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~ 100 (771)
-+.|++-|.+.| ++++.+.-... ...++....+|+.+.....++.-+ .+...++..+..++ |+..+..+++||..+
T Consensus 24 ~~~v~~al~~~g-~~v~~i~~~~~-~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~ 101 (307)
T 3r5x_A 24 GNEMIANLDKNK-YEIVPITLNEK-MDLIEKAKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNIS 101 (307)
T ss_dssp HHHHHHHSCTTT-EEEEEEECSSG-GGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHCC-CEEEEEcccCc-hhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHH
Confidence 456777777766 78877654311 000222356787776543222111 23346667775555 679999999999999
Q ss_pred HHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCC
Q 004147 101 YEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGN 180 (771)
Q Consensus 101 ~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign 180 (771)
.++|+++|||+|++.++... ++....--..+++|+|+||..|. .|.|+. ++.+
T Consensus 102 ~~~l~~~Gip~p~~~~~~~~------------~~~~~~~~~~~~~P~vvKP~~~~-----------~s~Gv~----~v~~ 154 (307)
T 3r5x_A 102 KKILRYEGIETPDWIELTKM------------EDLNFDELDKLGFPLVVKPNSGG-----------SSVGVK----IVYD 154 (307)
T ss_dssp HHHHHHTTCCCCCEEEEESS------------SCCCHHHHHHHCSSEEEEECC---------------CCCE----EECS
T ss_pred HHHHHHCCCCCCCEEEEeCh------------hhhhHHHHHhcCCCEEEEeCCCC-----------CCCCEE----EeCC
Confidence 99999999999999999752 11110001235589999999986 233332 1222
Q ss_pred Cccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCC--eeeecC-CCCceeeeeeCCHHH--
Q 004147 181 RSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG--VVMRNP-DGKEVRYPVLLTPNE-- 254 (771)
Q Consensus 181 ~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG--~vrrN~-~gke~r~pv~Lt~eE-- 254 (771)
...... -+. ..+.+..+|+||||+ |++++|.++|+++.++..+.+. .+ .++++. ++|...+|+.|++++
T Consensus 155 ~~el~~-~~~~~~~~~~~~lvee~i~--G~e~~v~v~~g~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~p~~l~~~~~~ 229 (307)
T 3r5x_A 155 KDELIS-MLETVFEWDSEVVIEKYIK--GEEITCSIFDGKQLPIISIRHA--AEFFDYNAKYDDASTIEEVIELPAELKE 229 (307)
T ss_dssp HHHHHH-HHHHHHHHCSEEEEEECCC--SEEEEEEEETTEECCCEEEEEE--EEEETTEEEEEEEEEEEEECCCCHHHHH
T ss_pred HHHHHH-HHHHHHhcCCCEEEECCcC--CEEEEEEEECCEEeeEEEEEcC--CcccChhhcCCCCCCeEecCCCCHHHHH
Confidence 111110 000 112367899999998 8999999999988666444443 33 466666 666666799999976
Q ss_pred --HHHHHHHHHHhcCc-eeeEeEEeeCCCcEEEecCCc------ccc-----ccccccHHHHHHHHHHHHH
Q 004147 255 --KQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNGW------SFV-----KNSYKYYDDAACVLRKMFL 311 (771)
Q Consensus 255 --k~iA~ka~~afgq~-VcGfDLLRs~g~syVcDVNGw------SFV-----K~n~kYYddca~iL~~~~l 311 (771)
+++|.++++++|.. +++||++.++|++||+|||-. |.+ .....|-+-+++||..-+-
T Consensus 230 ~i~~~a~~~~~~lg~~G~~~vD~~~~~g~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~~~li~~ll~~a~~ 300 (307)
T 3r5x_A 230 RVNKASLACYKALKCSVYARVDMMVKDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSLR 300 (307)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEEEEETTEEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEECCeEEEEEEcCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 88999999999998 999999999888999999954 221 1234566666666665443
No 12
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.69 E-value=3.5e-16 Score=158.87 Aligned_cols=232 Identities=15% Similarity=0.155 Sum_probs=149.7
Q ss_pred HHHHHHHhhcCCeEEEEeCccccccCCCCC--CCccceeeccccCCCChH-HHHHHHHhcC-CcccCCchhhhHhhhHHH
Q 004147 24 GQILDRLQAFGEFEVIHFGDKVILEDPIEK--WPICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRK 99 (771)
Q Consensus 24 ~~IL~rl~~~~~f~~iiF~d~~IL~~~ve~--WP~cd~lIsf~s~GfpL~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~ 99 (771)
+.+...+.+.| ++++++.-. +.+... -..+|+.+.....++.-+ ...+.++..+ |++-|+..+..+++||..
T Consensus 24 ~~l~~al~~~G-~~v~~~~~~---~~~~~~~~~~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~ 99 (306)
T 1iow_A 24 AAVLAGLREGG-IDAYPVDPK---EVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLR 99 (306)
T ss_dssp HHHHHHHHHTT-CEEEEECTT---TSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHH
T ss_pred HHHHHHHHHCC-CeEEEEecC---chHHHHhhccCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHH
Confidence 56777777765 788777643 111110 125677665442222111 1233455566 455699999999999999
Q ss_pred HHHHHHhCCCCCCCEEEEeccCCCccccccccccc----eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHh
Q 004147 100 VYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED----FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELF 175 (771)
Q Consensus 100 ~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d----~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLf 175 (771)
+.++|+++|||+|++..+... . ..+ .+.---..++.|+|+||..|. .|.|+. +
T Consensus 100 ~~~~l~~~gi~~p~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~p~vvKP~~g~-----------~~~gv~-~- 156 (306)
T 1iow_A 100 SKLLWQGAGLPVAPWVALTRA--E--------FEKGLSDKQLAEISALGLPVIVKPSREG-----------SSVGMS-K- 156 (306)
T ss_dssp HHHHHHHTTCCBCCEEEEEHH--H--------HHHCCCTHHHHHHHTTCSSEEEEETTCC-----------TTTTCE-E-
T ss_pred HHHHHHHCCCCCCCeEEEchh--h--------hhccchhhhhhHHhccCCCEEEEeCCCC-----------CCCCEE-E-
Confidence 999999999999999988642 0 011 000001124579999999986 333442 1
Q ss_pred hhcCCCccccccccccc-ccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCC--eeeecCCCCcee--eeeeC
Q 004147 176 RKVGNRSSEFHPDVRRV-RREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG--VVMRNPDGKEVR--YPVLL 250 (771)
Q Consensus 176 rkign~sS~~~~~~~~~-r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG--~vrrN~~gke~r--~pv~L 250 (771)
+.+... +..-.... +.+..+|+||||+ |++++|.++|+++.++..+... ++ .++.|.+.|+.. .|..|
T Consensus 157 --v~~~~e-l~~~~~~~~~~~~~~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~p~~l 229 (306)
T 1iow_A 157 --VVAENA-LQDALRLAFQHDEEVLIEKWLS--GPEFTVAILGEEILPSIRIQPS--GTFYDYEAKFLSDETQYFCPAGL 229 (306)
T ss_dssp --ESSGGG-HHHHHHHHTTTCSEEEEEECCC--CCEEEEEEETTEECCCEEEECS--SSSSCHHHHHTCSCCEEESSCCC
T ss_pred --eCCHHH-HHHHHHHHHhhCCCEEEEeCcC--CEEEEEEEECCCccceEEEEeC--CCeEchhheecCCCeeEEcCCCC
Confidence 222221 11000011 2367899999998 8999999999987777665432 22 244566544443 35567
Q ss_pred CH----HHHHHHHHHHHHhcCc-eeeEeEEee-CCCcEEEecCCc
Q 004147 251 TP----NEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVNGW 289 (771)
Q Consensus 251 t~----eEk~iA~ka~~afgq~-VcGfDLLRs-~g~syVcDVNGw 289 (771)
++ +-+++|.++++++|.. ++|||++.+ +|++||+|||..
T Consensus 230 ~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~~iEiN~r 274 (306)
T 1iow_A 230 EASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTS 274 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTSCEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHHcCCceEEEEEEEEcCCCCEEEEEecCC
Confidence 75 4578999999999996 999999998 456999999954
No 13
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.63 E-value=2.2e-15 Score=156.35 Aligned_cols=240 Identities=14% Similarity=0.076 Sum_probs=148.7
Q ss_pred hhHHHHHHHHhhcCCeEEEEeCccccccCCCCCCCccceeeccccCCCCh-HHHHHHHHhcCCccc-CCchhhhHhhhHH
Q 004147 21 APMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFYSSGYPL-EKAESYATLRKPFLV-NELEPQHLLHDRR 98 (771)
Q Consensus 21 kPm~~IL~rl~~~~~f~~iiF~d~~IL~~~ve~WP~cd~lIsf~s~GfpL-~kai~y~~lr~p~~i-Ndl~~q~~l~DR~ 98 (771)
.--++|++-|.+.| ++++.++.....-..+ .+..+|+.+.-..-++-. ......++..+...+ |+..+..+++||.
T Consensus 32 ~s~~~v~~al~~~g-~~v~~i~~~~~~~~~l-~~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK~ 109 (317)
T 4eg0_A 32 TSGRLVLQGLRDAG-IDAHPFDPAERPLSAL-KDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKF 109 (317)
T ss_dssp HHHHHHHHHHHHTT-CEEEEECTTTSCTTHH-HHTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHCC-CEEEEEeCCCchHHHh-hhcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCHH
Confidence 34688888888866 7888887432100011 123467665433211111 134566677776555 7889999999999
Q ss_pred HHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhc
Q 004147 99 KVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKV 178 (771)
Q Consensus 99 ~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrki 178 (771)
.+.++|+++|||+|++.++... . +..+.++---..+++|+|+||..|. .|.|+. ++
T Consensus 110 ~~k~~l~~~Gip~p~~~~~~~~--~-------~~~~~~~~~~~~~g~PvvvKP~~~~-----------~s~Gv~----~v 165 (317)
T 4eg0_A 110 RTKLVWQQTGVPTPPFETVMRG--D-------DYAARATDIVAKLGLPLFVKPASEG-----------SSVAVL----KV 165 (317)
T ss_dssp HHHHHHHHTTCCCCCEEEEETT--S-------CHHHHHHHHHHHHCSCEEEEECC----------------CCE----EE
T ss_pred HHHHHHHHCCcCCCCEEEEECc--h-------hHHHHHHHHHHhcCCCEEEEeCCCC-----------CCCCEE----EE
Confidence 9999999999999999999753 1 0111110000235689999999986 233332 23
Q ss_pred CCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeCCCCCC--eeeecCCCCcee--eeeeCCH-
Q 004147 179 GNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDG--VVMRNPDGKEVR--YPVLLTP- 252 (771)
Q Consensus 179 gn~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKSP~~DG--~vrrN~~gke~r--~pv~Lt~- 252 (771)
.|...... -+. ..+.+..+|+||||+. |+++.|.++|+.+.++..+.+. .+ .++.+.+.++.. .|..|++
T Consensus 166 ~~~~el~~-a~~~~~~~~~~~lvEe~i~~-G~E~~v~vl~~~~~~~~~i~~~--~~~~~~~~k~~~g~~~~~~P~~l~~~ 241 (317)
T 4eg0_A 166 KTADALPA-ALSEAATHDKIVIVEKSIEG-GGEYTACIAGDLDLPLIKIVPA--GEFYDYHAKYVANDTQYLIPCGLPAE 241 (317)
T ss_dssp CSGGGHHH-HHHHHTTTCSEEEEEECCCS-SEEEEEEEETTCCCCCEEEEC-----------------CEEESSCSSCHH
T ss_pred CCHHHHHH-HHHHHHhCCCeEEEEcCCCC-CcEEEEEEECCcccceEEEeeC--CceechhhcccCCCeeEEcCCCCCHH
Confidence 32222111 000 1234678999999987 9999999999987777766543 22 233444444444 3556775
Q ss_pred ---HHHHHHHHHHHHhcCc-eeeEeEEee-CCCcEEEecCCcc
Q 004147 253 ---NEKQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVNGWS 290 (771)
Q Consensus 253 ---eEk~iA~ka~~afgq~-VcGfDLLRs-~g~syVcDVNGwS 290 (771)
+-+++|.++++++|.. +|+||++.+ +|++||+|||-.+
T Consensus 242 ~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~~p 284 (317)
T 4eg0_A 242 QETELKRIARRAFDVLGCTDWGRADFMLDAAGNAYFLEVNTAP 284 (317)
T ss_dssp HHHHHHHHHHHHHHTTTCCSEEEEEEEECTTCCEEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCC
Confidence 4578899999999997 999999988 5679999999543
No 14
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.54 E-value=4.4e-14 Score=147.72 Aligned_cols=199 Identities=16% Similarity=0.249 Sum_probs=134.7
Q ss_pred CccceeeccccCCCChH-HHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 004147 55 PICDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (771)
Q Consensus 55 P~cd~lIsf~s~GfpL~-kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 132 (771)
..+|+.+....-.+-.+ .....++..+. ++-++..+..+++||..+.++|+++|||+|++..+.+. +
T Consensus 75 ~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~----------~- 143 (322)
T 2fb9_A 75 ERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKG----------E- 143 (322)
T ss_dssp TTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEEETT----------S-
T ss_pred cCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEECc----------h-
Confidence 35788887653222221 34455667774 55577999999999999999999999999999998753 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCC-ce
Q 004147 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGG-TD 210 (771)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G-~D 210 (771)
++.+ .++.|+|+||..|. .|-|+. ++.|... +..-+. ..+.+..+|+||||+ | ++
T Consensus 144 ~~~~-----~~g~PvvvKP~~g~-----------~s~Gv~----~v~~~~e-l~~a~~~~~~~~~~vlvEe~I~--G~~E 200 (322)
T 2fb9_A 144 PPVV-----PFDPPFFVKPANTG-----------SSVGIS----RVERFQD-LEAALALAFRYDEKAVVEKALS--PVRE 200 (322)
T ss_dssp CCCC-----CSCSCEEEEETTCC-----------TTTTCE----EESSHHH-HHHHHHHHTTTCSEEEEEECCS--SCEE
T ss_pred hhhh-----ccCCCEEEEeCCCC-----------CCCCEE----EECCHHH-HHHHHHHHHhcCCeEEEEeCCC--CCee
Confidence 1111 45689999999986 333442 1322221 111010 123467899999996 7 99
Q ss_pred eEEEEECCc---eeEEEeeeCCCCCCe--eeecCCCCce--eeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeC
Q 004147 211 VKVYTVGPE---YAHAEARKSPVVDGV--VMRNPDGKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCE 278 (771)
Q Consensus 211 IKVytVG~~---~vhAe~RKSP~~DG~--vrrN~~gke~--r~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~ 278 (771)
+.|.++|+. +.++..+... .+. ++.+.+.+.. -.|..|++ +-+++|.++++++|. .+|+||++.++
T Consensus 201 ~~v~vl~~~~~~~~~~~ei~~~--~~~~~~~~k~~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 278 (322)
T 2fb9_A 201 LEVGVLGNVFGEASPVGEVRYE--APFYDYETKYTPGRAELLIPAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLAE 278 (322)
T ss_dssp EEEEEESSSSCEEEEEEEEEEE--CCEEETTTEEECCEEEEESSCCCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEET
T ss_pred EEEEEEeCCCceEeeeEEEeeC--CCccCHHHcccCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEEC
Confidence 999999985 5555544431 111 2233333333 34666776 778899999999999 89999999986
Q ss_pred CCcEEEecCCc
Q 004147 279 GRSYVCDVNGW 289 (771)
Q Consensus 279 g~syVcDVNGw 289 (771)
|++||+|||-.
T Consensus 279 g~~~vlEiN~r 289 (322)
T 2fb9_A 279 GELYLNELNTI 289 (322)
T ss_dssp TEEEEEEEESS
T ss_pred CcEEEEEEECC
Confidence 67999999953
No 15
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.51 E-value=1.9e-13 Score=146.68 Aligned_cols=224 Identities=14% Similarity=0.160 Sum_probs=143.7
Q ss_pred ccceeeccccCCCChH-HHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 004147 56 ICDCLIAFYSSGYPLE-KAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~-kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (771)
.+|+.+....-.+..+ .+...++..+. ++-|+..+..+++||..+.++|+++|||+|++..+.+. . ..
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~--~--------~~ 176 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVLLNEK--N--------RA 176 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEEECTT--T--------GG
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEEEEeCC--c--------hH
Confidence 4677776543223322 34556677775 45589999999999999999999999999999998653 0 11
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCC-ce-
Q 004147 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGG-TD- 210 (771)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G-~D- 210 (771)
+... -..++.|+|+||..|. .|-|+. ++.|... +..-+. ..+.+..+|+||||+ | ++
T Consensus 177 ~~~~--~~~lg~PvvVKP~~g~-----------ss~Gv~----~v~~~~e-l~~a~~~~~~~~~~vlVEe~I~--G~~E~ 236 (367)
T 2pvp_A 177 NALD--LMNFNFPFIVKPSNAG-----------SSLGVN----VVKEEKE-LIYALDSAFEYSKEVLIEPFIQ--GVKEY 236 (367)
T ss_dssp GHHH--HCCSCSCEEEEESSCC-----------TTTTCE----EESSTTS-HHHHHHHHTTTCSCEEEEECCT--TCEEE
T ss_pred HHHH--HhccCCCEEEEECCCC-----------CCCCEE----EECCHHH-HHHHHHHHHhcCCcEEEEeCCC--CCcee
Confidence 2222 1235689999999986 344442 2333322 111111 122467899999997 7 89
Q ss_pred --eEEEEECCceeEEEeeeCCCCCCe--eeecCCCCc--eeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeCC
Q 004147 211 --VKVYTVGPEYAHAEARKSPVVDGV--VMRNPDGKE--VRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCEG 279 (771)
Q Consensus 211 --IKVytVG~~~vhAe~RKSP~~DG~--vrrN~~gke--~r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~g 279 (771)
+.|.+ +++.+....+..|. .|. ++.+.+.++ ...|..|++ +-+++|.++++++|.. +|+||++.++|
T Consensus 237 svi~v~v-~g~~~~~~~ei~~~-~~~~d~~~ky~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~g 314 (367)
T 2pvp_A 237 NLAGCKI-KKDFCFSYIEEPNK-QEFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVIEN 314 (367)
T ss_dssp EEEEEEE-TTEEEEEEEEETTT-TEEECCCCSSCCSCCCSCCCCCCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEETT
T ss_pred eEEEEEE-CCEEEEEEEEEecC-CceEcccccccCCCeeEEecCCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEECC
Confidence 88887 77744443354441 222 334444333 345777885 4678999999999975 99999999878
Q ss_pred CcEEEecCCccccccccccHHHHHHHHHHHHHH
Q 004147 280 RSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLE 312 (771)
Q Consensus 280 ~syVcDVNGwSFVK~n~kYYddca~iL~~~~l~ 312 (771)
++||+|||--.=.- ....|-+-+.++..++..
T Consensus 315 ~~~vlEiN~rpg~t-~~s~~p~~~~l~~~li~~ 346 (367)
T 2pvp_A 315 EVYLNEINPIPGSL-ANYLFDDFKTTLENLAQS 346 (367)
T ss_dssp EEEEEEEESSCGGG-GGGGSSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCC-cccccCCHHHHHHHHHhC
Confidence 89999999532111 111222455666666554
No 16
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.51 E-value=2.3e-13 Score=142.80 Aligned_cols=200 Identities=15% Similarity=0.222 Sum_probs=130.6
Q ss_pred ccceeeccccCCCChH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 004147 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (771)
.+|+.+.-..-.+-.+ .....++..+ ||+-|+..+..+++||..+.++|+++|||+|++..+.+. .
T Consensus 90 ~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~--~---------- 157 (343)
T 1e4e_A 90 HVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKD--D---------- 157 (343)
T ss_dssp ECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEECTT--C----------
T ss_pred cCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEEEEech--h----------
Confidence 4677666542222111 2344555666 455688999999999999999999999999999998652 1
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 004147 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (771)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIK 212 (771)
+ +. . ..+++|+|+||..|. .|-|+. ++.+.... ..-+. ..+.+..+|+||||+ |+++.
T Consensus 158 ~-~~-~-~~~~~PvvvKP~~~~-----------~s~Gv~----~v~~~~el-~~a~~~~~~~~~~~lvEe~I~--G~E~~ 216 (343)
T 1e4e_A 158 R-PV-A-ATFTYPVFVKPARSG-----------SSFGVK----KVNSADEL-DYAIESARQYDSKILIEQAVS--GCEVG 216 (343)
T ss_dssp C-CC-G-GGSCSCEEEEESSCC-----------TTTTCE----EECSGGGH-HHHHHHHTTTCSSEEEEECCC--SEEEE
T ss_pred h-hh-h-hccCCCEEEEeCCCC-----------CCCCEE----EeCCHHHH-HHHHHHHHhcCCcEEEEeCcC--CeEEE
Confidence 1 11 0 346789999999985 333432 13222211 11011 123467899999997 89999
Q ss_pred EEEECCc----eeEEEeeeCCCCCCeeeecCC----CCcee--eeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEee
Q 004147 213 VYTVGPE----YAHAEARKSPVVDGVVMRNPD----GKEVR--YPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRC 277 (771)
Q Consensus 213 VytVG~~----~vhAe~RKSP~~DG~vrrN~~----gke~r--~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs 277 (771)
|.++|.. +.....+...----.++.+.+ .|+.. .|..|++ +-+++|.++++++|.. +++||++.+
T Consensus 217 v~vl~~~~~~~~~~~~ei~~~~~~~~~~~k~~~~~~~g~~~~~~p~~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~ 296 (343)
T 1e4e_A 217 CAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQ 296 (343)
T ss_dssp EEEEEETTCCEECCCEEEEESSSCCCGGGSSSGGGCCSSEEECSSCSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred EEEEeCCCCeEEeeeEEEeeCCCccCHhhcccccCCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEe
Confidence 9999865 233333332100012445555 44433 4555775 6788999999999995 999999997
Q ss_pred -CCCcEEEecCC
Q 004147 278 -EGRSYVCDVNG 288 (771)
Q Consensus 278 -~g~syVcDVNG 288 (771)
+|.+||+|||-
T Consensus 297 ~~g~~~viEiN~ 308 (343)
T 1e4e_A 297 DNGRIVLNEVNT 308 (343)
T ss_dssp TTCCEEEEEEES
T ss_pred CCCCEEEEEeeC
Confidence 56699999994
No 17
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.50 E-value=1.5e-13 Score=147.14 Aligned_cols=207 Identities=18% Similarity=0.193 Sum_probs=136.2
Q ss_pred CccceeeccccCCCChH-HHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccc
Q 004147 55 PICDCLIAFYSSGYPLE-KAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEE 132 (771)
Q Consensus 55 P~cd~lIsf~s~GfpL~-kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~ 132 (771)
..+|+.+.-+.-.+..+ .....++..+.+.+ |+..+..+++||..+.++|+++|||+|++..+.+. . +.
T Consensus 92 ~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~--~-------~~ 162 (377)
T 1ehi_A 92 GDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPE--S-------AN 162 (377)
T ss_dssp CCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEEEECTT--G-------GG
T ss_pred cCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEEEEecc--c-------cc
Confidence 35788877653323222 34456677775555 99999999999999999999999999999998653 0 00
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCC-ce
Q 004147 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGG-TD 210 (771)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G-~D 210 (771)
+..+.---..+++|+|+||..|. .|-|+. ++.|... +..-+. ....+..+|+||||+ | ++
T Consensus 163 ~~~~~~~~~~~g~PvvVKP~~~~-----------~s~Gv~----~v~~~~e-l~~a~~~~~~~~~~vlvEe~I~--G~~E 224 (377)
T 1ehi_A 163 NWSWDKIVAELGNIVFVKAANQG-----------SSVGIS----RVTNAEE-YTEALSDSFQYDYKVLIEEAVN--GARE 224 (377)
T ss_dssp GCCHHHHHHHHCSCEEEEESSCC-----------TTTTEE----EECSHHH-HHHHHHHHTTTCSCEEEEECCC--CSCE
T ss_pred hHHHHHHHHhcCCCEEEEeCCCC-----------CCcCEE----EeCCHHH-HHHHHHHHHhcCCcEEEEcCCC--CCce
Confidence 10111001235689999999985 333432 1322211 111000 123456899999996 7 99
Q ss_pred eEEEEECCc---eeEEEeeeCCC---CCCee--eecCCCC-ce--eeeeeCCHH----HHHHHHHHHHHhcCc-eeeEeE
Q 004147 211 VKVYTVGPE---YAHAEARKSPV---VDGVV--MRNPDGK-EV--RYPVLLTPN----EKQMAREVCIAFRQA-VCGFDL 274 (771)
Q Consensus 211 IKVytVG~~---~vhAe~RKSP~---~DG~v--rrN~~gk-e~--r~pv~Lt~e----Ek~iA~ka~~afgq~-VcGfDL 274 (771)
+.|.++|+. +.+...+.... ..|.+ +.+.+.+ +. ..|..|+++ -+++|.++++++|.. +|+||+
T Consensus 225 ~~v~vl~~~~~~~~~~~ei~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~ 304 (377)
T 1ehi_A 225 LEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDF 304 (377)
T ss_dssp EEEEEEESSSCEEEEEEEEECTTSSSSSCCCCHHHHTTCCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEEcCCCcEEEeeEEEEecCCCCcCceeCHHhcccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999874 66666555411 12222 3333333 33 347778865 477999999999997 999999
Q ss_pred Eee-CCCcEEEecCC
Q 004147 275 LRC-EGRSYVCDVNG 288 (771)
Q Consensus 275 LRs-~g~syVcDVNG 288 (771)
+.+ +|.+||+|||-
T Consensus 305 ~~~~~g~~~vlEiN~ 319 (377)
T 1ehi_A 305 LLDENNVPYLGEPNT 319 (377)
T ss_dssp EECTTCCEEEEEEES
T ss_pred EEeCCCCEEEEEEeC
Confidence 998 56799999994
No 18
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.50 E-value=6.5e-14 Score=146.21 Aligned_cols=172 Identities=17% Similarity=0.214 Sum_probs=123.0
Q ss_pred Cccceeecc-ccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 004147 55 PICDCLIAF-YSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (771)
Q Consensus 55 P~cd~lIsf-~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (771)
+.||+.+-- +.....+....+.++..++++.|+..+..+++||..+.++|++ |||+|++.+.
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~~~g~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~~---------------- 130 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAEKYCENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSLR---------------- 130 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHHTTSEESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEESS----------------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEecc----------------
Confidence 567763222 2222335567777777778999999999999999999999999 9999999741
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 004147 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (771)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKV 213 (771)
.++.|+|+||.+|. .|-|+. ++.+ .+..+|+||||+ |+++.|
T Consensus 131 --------~~~~P~vvKP~~g~-----------gs~Gv~----~v~~-------------~~~~~lvEe~I~--G~e~sv 172 (305)
T 3df7_A 131 --------PLDCKFIIKPRTAC-----------AGEGIG----FSDE-------------VPDGHIAQEFIE--GINLSV 172 (305)
T ss_dssp --------CCSSSEEEEESSCC---------------CB----CCSS-------------CCTTEEEEECCC--SEEEEE
T ss_pred --------cCCCCEEEEeCCCC-----------CCCCEE----EEec-------------CCCCEEEEeccC--CcEEEE
Confidence 13479999999986 333442 2322 456799999999 899999
Q ss_pred EEECCceeEEEeeeCCCCCCeeeecC-CCCceeeeeeCC----HHHHHHHHHHHHHh-c-CceeeEeEEeeCCCcEEEec
Q 004147 214 YTVGPEYAHAEARKSPVVDGVVMRNP-DGKEVRYPVLLT----PNEKQMAREVCIAF-R-QAVCGFDLLRCEGRSYVCDV 286 (771)
Q Consensus 214 ytVG~~~vhAe~RKSP~~DG~vrrN~-~gke~r~pv~Lt----~eEk~iA~ka~~af-g-q~VcGfDLLRs~g~syVcDV 286 (771)
.++++..+++..+... +..+. ..+. ..|..|+ ++-+++|.++++++ | ..++|||++.+ |++||+||
T Consensus 173 ~v~~g~~~~~~~~~~~-----~~~~~~~~g~-~~p~~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~-~~~~viEi 245 (305)
T 3df7_A 173 SLAVGEDVKCLSVNEQ-----IINNFRYAGA-VVPARISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS-DQPYVIEI 245 (305)
T ss_dssp EEEESSSEEEEEEEEE-----EEETTEEEEE-EESCCCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES-SSEEEEEE
T ss_pred EEEeCCeEEEEEEeeE-----eccCceeccc-cccCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC-CCEEEEEE
Confidence 9997555555443221 11111 1222 3466677 57788999999999 8 46999999996 88999999
Q ss_pred CC
Q 004147 287 NG 288 (771)
Q Consensus 287 NG 288 (771)
|-
T Consensus 246 Np 247 (305)
T 3df7_A 246 NA 247 (305)
T ss_dssp ES
T ss_pred cC
Confidence 93
No 19
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.50 E-value=3.2e-13 Score=142.35 Aligned_cols=199 Identities=17% Similarity=0.254 Sum_probs=130.3
Q ss_pred cceeeccccCCCCh-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 004147 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (771)
Q Consensus 57 cd~lIsf~s~GfpL-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (771)
+|+.+.-..-.+.- .....+++..+ ||+-++..+..+++||..+.++|+++|||+|++..+.+.. ..
T Consensus 91 ~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~-----------~~ 159 (346)
T 3se7_A 91 LDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFWTVTADE-----------KI 159 (346)
T ss_dssp CSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEEEEETTS-----------CC
T ss_pred CCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEEEEcCcH-----------HH
Confidence 57666554322222 24556777777 5566679999999999999999999999999999997631 11
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEE
Q 004147 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKV 213 (771)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIKV 213 (771)
.-..++.|+|+||..|. .|.|+. ++.+... +..-+. ..+.+..+|+||||+ |+++.|
T Consensus 160 ----~~~~lg~PvvvKP~~~~-----------~s~Gv~----~v~~~~e-l~~a~~~~~~~~~~vlvEe~I~--G~E~~v 217 (346)
T 3se7_A 160 ----PTDQLTYPVFVKPARSG-----------SSFGVS----KVAREED-LQGAVEAAREYDSKVLIEEAVI--GTEIGC 217 (346)
T ss_dssp ----CTTTCCSSEEEEESSCC-----------TTTTCE----EECSHHH-HHHHHHHHTTTCSEEEEEECCC--SEEEEE
T ss_pred ----HHHhcCCCEEEEeCCCC-----------CCcCEE----EECCHHH-HHHHHHHHHhCCCcEEEEeCcC--CEEEEE
Confidence 12235689999999985 333432 1222211 111011 123567899999998 899999
Q ss_pred EEECCc---eeEEEeeeCCCCCCee------eecCC--CCceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEee
Q 004147 214 YTVGPE---YAHAEARKSPVVDGVV------MRNPD--GKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRC 277 (771)
Q Consensus 214 ytVG~~---~vhAe~RKSP~~DG~v------rrN~~--gke~r~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs 277 (771)
.++|.. .+....+..+. ++.+ ....+ +.....|..|++ +-+++|.++++++|. .+++||++.+
T Consensus 218 ~vl~~~~~~~~~~~~e~~~~-~~~~d~~q~~~~ky~~~~~~~~~pa~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~ 296 (346)
T 3se7_A 218 AVMGNGPELITGEVDQITLS-HGFFKIHQESTPESGSDNSAVTVPADISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLT 296 (346)
T ss_dssp EEEEETTEEEECCCEEECCC---------------CGGGSCEESSCCCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEC
T ss_pred EEEecCCCeEEEeeEEEecC-CCCcCcccchhccccCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEe
Confidence 999874 33334444431 2211 22222 122345677887 667899999999999 6999999998
Q ss_pred C-CCcEEEecCCc
Q 004147 278 E-GRSYVCDVNGW 289 (771)
Q Consensus 278 ~-g~syVcDVNGw 289 (771)
. |.+||+|||..
T Consensus 297 ~~g~~~vlEiN~r 309 (346)
T 3se7_A 297 EDGKVVLNEVNTF 309 (346)
T ss_dssp TTSCEEEEEEESS
T ss_pred CCCCEEEEEEeCC
Confidence 5 55999999943
No 20
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.48 E-value=1.1e-13 Score=146.59 Aligned_cols=208 Identities=14% Similarity=0.181 Sum_probs=128.7
Q ss_pred ccceeeccccCCCChH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 004147 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (771)
.+|+.+......+..+ .....++..+ |++-++..+..+++||..+.++|+++|||+|++..+.+...... ..+
T Consensus 87 ~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~-----~~~ 161 (364)
T 2i87_A 87 PYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKY-----EHN 161 (364)
T ss_dssp BCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEEEEEHHHHHHH-----HHH
T ss_pred CCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEEEEechhhccc-----chh
Confidence 4687776542222221 2345556666 45556799999999999999999999999999999875300000 000
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 004147 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (771)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIK 212 (771)
+...+ -..+++|+|+||..|. .|-|+. ++.+... +..-+. ..+.+..+|+||||+ |+++.
T Consensus 162 ~~~~~-~~~~g~PvvvKP~~g~-----------~s~Gv~----~v~~~~e-l~~a~~~~~~~~~~~lvEe~I~--G~E~~ 222 (364)
T 2i87_A 162 ILKLV-NDKLNYPVFVKPANLG-----------SSVGIS----KCNNEAE-LKEGIKEAFQFDRKLVIEQGVN--AREIE 222 (364)
T ss_dssp HHHHH-HHHCCSSEEEEESSCS-----------SCTTCE----EESSHHH-HHHHHHHHHTTCSEEEEEECCC--CEEEE
T ss_pred HHHHH-HHhcCCCEEEEeCCCC-----------CCCCEE----EECCHHH-HHHHHHHHHhcCCeEEEEeCcc--CeEEE
Confidence 11111 1135689999999986 333442 1322221 111010 113467899999998 89999
Q ss_pred EEEECCc---eeEEEeeeCCCCCC--eeeecCCCCce--eeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEee-CC
Q 004147 213 VYTVGPE---YAHAEARKSPVVDG--VVMRNPDGKEV--RYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRC-EG 279 (771)
Q Consensus 213 VytVG~~---~vhAe~RKSP~~DG--~vrrN~~gke~--r~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs-~g 279 (771)
|.++|+. +++...+... .+ .++.+.+.|.. ..|..|++ +.+++|.++++++|. .+++||++.+ +|
T Consensus 223 v~vl~~~~~~~~~~~e~~~~--~~~~~~~~k~~~g~~~~~~pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g 300 (364)
T 2i87_A 223 VAVLGNDYPEATWPGEVVKD--VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTEDN 300 (364)
T ss_dssp EEEEESSSCEECCCEEECCS--CCC-----------CCEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTC
T ss_pred EEEEcCCCcEEeeeEEEecC--CCcCCHHHcccCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEecCC
Confidence 9999875 4444444321 12 23444444432 34666876 668899999999999 6999999997 56
Q ss_pred CcEEEecCCc
Q 004147 280 RSYVCDVNGW 289 (771)
Q Consensus 280 ~syVcDVNGw 289 (771)
.+||+|||..
T Consensus 301 ~~~viEiN~r 310 (364)
T 2i87_A 301 QIYINETNAM 310 (364)
T ss_dssp CEEEEEEESS
T ss_pred CEEEEEEeCC
Confidence 6999999953
No 21
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.39 E-value=9.2e-13 Score=142.45 Aligned_cols=227 Identities=12% Similarity=0.140 Sum_probs=136.6
Q ss_pred cceeeccccCCCCh-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCC-CCCCCEEEEeccCCCcccccccccc
Q 004147 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYG-IPVPRYALVNREVPYQELDYFIEEE 133 (771)
Q Consensus 57 cd~lIsf~s~GfpL-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~g-IP~P~t~~~~r~~p~~~~~~~~e~~ 133 (771)
+|+.+.-..-.+-- -....+++..+ ||+-|+..+..+++||..+.++|+++| ||+|++..+.+.. +.+
T Consensus 120 ~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~~~~~~~---------~~~ 190 (383)
T 3k3p_A 120 EAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYVALIEGE---------PLE 190 (383)
T ss_dssp TCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEEEEETTS---------CHH
T ss_pred CCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEEEEeCcc---------chh
Confidence 56555443222221 14566777777 567789999999999999999999999 9999999997631 000
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 004147 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (771)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIK 212 (771)
+.+.---..+++|+|+||..|. .|.|+. ++.|...... -+. ..+.+..+|+||||+ |+++.
T Consensus 191 ~~~~~~~~~lg~PvvVKP~~gg-----------ss~GV~----~v~~~~el~~-al~~a~~~~~~vlVEe~I~--G~E~~ 252 (383)
T 3k3p_A 191 SKLAEVEEKLIYPVFVKPANMG-----------SSVGIS----KAENRTDLKQ-AIALALKYDSRVLIEQGVD--AREIE 252 (383)
T ss_dssp HHHHHHHHHCCSSEEEEECC-----------------CE----EESSHHHHHH-HHHHHHHHCSEEEEEECCC--SEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-----------CCCCEE----EECCHHHHHH-HHHHHHhCCCeEEEEcCCC--CeEEE
Confidence 1111011245689999999985 233332 2332221111 011 123567899999998 99999
Q ss_pred EEEECCceeEE---EeeeCCCCCC--eeeecCCCC--ceeeeeeCCHHH----HHHHHHHHHHhcCc-eeeEeEEee-CC
Q 004147 213 VYTVGPEYAHA---EARKSPVVDG--VVMRNPDGK--EVRYPVLLTPNE----KQMAREVCIAFRQA-VCGFDLLRC-EG 279 (771)
Q Consensus 213 VytVG~~~vhA---e~RKSP~~DG--~vrrN~~gk--e~r~pv~Lt~eE----k~iA~ka~~afgq~-VcGfDLLRs-~g 279 (771)
|-++|+....+ ..+..+ .+ ++++..+.+ ....|..|+++. +++|.++++++|.. +++||++.+ +|
T Consensus 253 v~vl~d~~~~~~~~~ei~~~--~~~~d~~~ky~~g~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~~g 330 (383)
T 3k3p_A 253 VGILGNTDVKTTLPGEIVKD--VAFYDYEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTEDG 330 (383)
T ss_dssp EEEEESSSCEECCCEEEC-------------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTC
T ss_pred EEEEeCCCeeEEeeEEEecC--CCccchhhcccCCCeeEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEECCC
Confidence 99998754322 222221 12 123333222 233456677654 68999999999997 999999997 56
Q ss_pred CcEEEecCCc------ccc-----ccccccHHHHHHHHHHHHHH
Q 004147 280 RSYVCDVNGW------SFV-----KNSYKYYDDAACVLRKMFLE 312 (771)
Q Consensus 280 ~syVcDVNGw------SFV-----K~n~kYYddca~iL~~~~l~ 312 (771)
.+||+|||-. |.+ -....|-+-|.+||..-+.+
T Consensus 331 ~~~vlEINtrPG~t~~S~~p~~~~a~Gi~~~~li~~li~~a~~r 374 (383)
T 3k3p_A 331 KVYLNELNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLAKEM 374 (383)
T ss_dssp CEEEEEEESSCCCC--CHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 6999999943 222 11335666666776655543
No 22
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.39 E-value=3.2e-12 Score=137.60 Aligned_cols=229 Identities=13% Similarity=0.149 Sum_probs=138.2
Q ss_pred ccceeeccccCCCChH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 004147 56 ICDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (771)
.+|+.+.-..-.+.-+ ....++++.+ ||+-++..+..++.||..+.++|+++|||+|++..+.+.. +.+
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~---------~~~ 168 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRD---------ATE 168 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCCEEECTTS---------CCT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEEEEechh---------hhh
Confidence 4676655442222222 4567777888 5667889999999999999999999999999999997531 001
Q ss_pred ceeeecCeeccCc-EEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCcee
Q 004147 134 DFVEVHGNRFWKP-FVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDV 211 (771)
Q Consensus 134 d~i~v~g~~~~kP-fVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DI 211 (771)
..+.--...+++| +|+||..|. .|.|+. ++.|...... -+. ..+.+..+|+||||+ |+++
T Consensus 169 ~~~~~~~~~lg~P~vvVKP~~gg-----------ss~Gv~----~v~~~~eL~~-a~~~a~~~~~~vlVEe~I~--G~E~ 230 (372)
T 3tqt_A 169 GVYQRLLDRWGTSELFVKAVSLG-----------SSVATL----PVKTETEFTK-AVKEVFRYDDRLMVEPRIR--GREI 230 (372)
T ss_dssp THHHHHHHHC---CEEEEESSCC-----------SGGGEE----EECSHHHHHH-HHHHHTTTCSCEEEEECCC--SEEE
T ss_pred hHHHHHHHhcCCCeEEEEECCCC-----------CCCCEE----EECCHHHHHH-HHHHHHhcCCCEEEECCCC--CEEE
Confidence 1111111245689 999999875 233332 2333222111 011 223567899999998 8999
Q ss_pred EEEEECCceeEE--EeeeCCCCCC--eeeecCC-CC--ceeeeeeCCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC-
Q 004147 212 KVYTVGPEYAHA--EARKSPVVDG--VVMRNPD-GK--EVRYPVLLTP----NEKQMAREVCIAFRQA-VCGFDLLRCE- 278 (771)
Q Consensus 212 KVytVG~~~vhA--e~RKSP~~DG--~vrrN~~-gk--e~r~pv~Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~- 278 (771)
.|-++|+....+ ..+.-|. ++ .+++..+ |+ ....|..|++ +-+++|.++++++|.. +++||++.+.
T Consensus 231 ~v~vl~~~~~~~~~~~ei~~~-~~~~d~~~ky~~g~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~d 309 (372)
T 3tqt_A 231 ECAVLGNGAPKASLPGEIIPH-HDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTPN 309 (372)
T ss_dssp EEEEEESSSCEECCCEEEECC----------------CEEESCCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTT
T ss_pred EEEEEeCCCceEeeeEEEecC-CCccchhhcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeCC
Confidence 999999873221 1111110 22 2333333 22 2334667776 4568999999999997 9999999884
Q ss_pred CCcEEEecC---Cc---ccc-----ccccccHHHHHHHHHHHHHH
Q 004147 279 GRSYVCDVN---GW---SFV-----KNSYKYYDDAACVLRKMFLE 312 (771)
Q Consensus 279 g~syVcDVN---Gw---SFV-----K~n~kYYddca~iL~~~~l~ 312 (771)
|.+||+||| |+ |.+ ..-..|-+-|.+|+..-+-+
T Consensus 310 g~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~~r 354 (372)
T 3tqt_A 310 NKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELAIDR 354 (372)
T ss_dssp CCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 669999999 53 322 12235555566666655443
No 23
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.39 E-value=4.6e-12 Score=133.17 Aligned_cols=192 Identities=16% Similarity=0.171 Sum_probs=113.9
Q ss_pred ccceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
.+|++++.+... +. ..+++++. ++.|+..+..+++||..+.++|+++|||+|++..+. . . +..++
T Consensus 57 ~~d~v~~~~e~~-~~-~~~~~l~~---~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~-~--~-------~~~~~ 121 (365)
T 2z04_A 57 SCDIITYEFEHI-KD-EVLEKCES---KLIPNPQALYVKKSRIREKLFLKKHGFPVPEFLVIK-R--D-------EIIDA 121 (365)
T ss_dssp HCSEEEESSSCC-CH-HHHHHHTT---TBSSCTHHHHHHTCHHHHHHHHHTTTCCCCCEEEC------------------
T ss_pred cCCEEEECCCCC-cH-HHHHHHhh---hcCCCHHHHHHhhCHHHHHHHHHHcCCCCCCEEEEc-H--H-------HHHHH
Confidence 478888766443 33 35565543 899999999999999999999999999999999875 3 1 11222
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 004147 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVyt 215 (771)
+. .+++|+|+||..|. | .|.|+. +.+ +... +..-......+..+|+||||+. |+++.|.+
T Consensus 122 ~~----~~~~P~vvKp~~~~------~----~g~Gv~-~v~---~~~e-l~~~~~~~~~~~~~lvEe~i~~-g~e~sv~~ 181 (365)
T 2z04_A 122 LK----SFKLPVVIKAEKLG------Y----DGKGQY-RIK---KLED-ANQVVKNHDKEESFIIEEFVKF-EAEISCIG 181 (365)
T ss_dssp ----------CEEEECC---------------------------------------------CEEEECCCC-SEEEEEEE
T ss_pred HH----hcCCCEEEEEcCCC------c----CCCCeE-EEC---CHHH-HHHHHHHhccCCCEEEEccCCC-CEEEEEEE
Confidence 22 35589999999875 1 233443 332 2221 1111111213577999999985 89999999
Q ss_pred ECC---ceeEE-EeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCc-eeeEeEEeeC-CCcEEEecCCc
Q 004147 216 VGP---EYAHA-EARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCE-GRSYVCDVNGW 289 (771)
Q Consensus 216 VG~---~~vhA-e~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~afgq~-VcGfDLLRs~-g~syVcDVNGw 289 (771)
+++ ++++. ..++ +.++......-.|..|.++.+++|.++++++|.. ++++|++.+. |.+||+|||--
T Consensus 182 ~~d~~G~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~~~g~~~~iEiN~R 254 (365)
T 2z04_A 182 VRDREGKTYFYPQPFN-------KHEEGILIYNYVPYAKLKEAEEITKRLMELLDIVGVFTVEFFLLKDGRVLINEFAPR 254 (365)
T ss_dssp EECTTCCEEECCEEEE-------EEETTEEEEEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESS
T ss_pred EECCCCCEEEECCEEE-------EEeCCEeEEEECCHhHHHHHHHHHHHHHHHcCCEEEEEEEEEEeCCCcEEEEEeccC
Confidence 863 33321 1111 2222111123446667899999999999999995 9999999984 55999999964
No 24
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.37 E-value=4.3e-12 Score=134.36 Aligned_cols=187 Identities=21% Similarity=0.252 Sum_probs=125.0
Q ss_pred cceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (771)
||++++.+. .++..+.++++..+..+.|+..+..+++||..+.++|+++|||+|++..+... ++++
T Consensus 63 ~d~v~~~~e--~~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~~~~ 128 (380)
T 3ax6_A 63 SDVTTYDLE--HIDVQTLKKLYNEGYKIHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYKLVKDL------------ESDV 128 (380)
T ss_dssp CSEEEESCS--CSCHHHHHHHHHTTCEESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEEECSSH------------HHHH
T ss_pred CCEEEeccc--CCCHHHHHHHHHCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEeCCH------------HHHH
Confidence 677765443 34456677888888557799999999999999999999999999999887542 1222
Q ss_pred eecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE
Q 004147 137 EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV 216 (771)
Q Consensus 137 ~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytV 216 (771)
. .++.|+|+||..|. | .|.|+. .+.|... +.. .++ ..+|+||||+. |.++.|.++
T Consensus 129 ~----~~~~P~vvKp~~~~------y----~g~Gv~----~v~~~~e-l~~---~~~--~~~lvEe~i~~-g~e~sv~~~ 183 (380)
T 3ax6_A 129 R----EFGFPVVQKARKGG------Y----DGRGVF----IIKNEKD-LEN---AIK--GETYLEEFVEI-EKELAVMVA 183 (380)
T ss_dssp H----TTCSSEEEEESCCC---------------EE----EECSGGG-GGG---CCC--SSEEEEECCCE-EEEEEEEEE
T ss_pred H----hcCCCEEEEecCCC------C----CCCCeE----EECCHHH-HHH---Hhc--CCEEEEeccCC-CeeEEEEEE
Confidence 1 35689999999874 0 122332 2333222 111 222 78999999975 899999998
Q ss_pred CC---ceeE-EEeeeC--CCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeC-CCcEEE
Q 004147 217 GP---EYAH-AEARKS--PVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCE-GRSYVC 284 (771)
Q Consensus 217 G~---~~vh-Ae~RKS--P~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~-g~syVc 284 (771)
+. ++.. ...++- + ..|.. ...-.|..|++ +-+++|.++++++|. .++++|++.+. |++||+
T Consensus 184 ~~~~G~~~~~~~~~~~~~~-~~~~~------~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~g~~~vi 256 (380)
T 3ax6_A 184 RNEKGEIACYPVVEMYFDE-DANIC------DTVIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTKQGEILVN 256 (380)
T ss_dssp ECSSCCEEEEEEEEEC---------------CEEEESCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEEE
T ss_pred ECCCCCEEEECCeeeeecc-cCCee------EEEECCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcEEEE
Confidence 64 3322 111111 1 01111 12234666776 567889999999999 49999999985 569999
Q ss_pred ecCCc
Q 004147 285 DVNGW 289 (771)
Q Consensus 285 DVNGw 289 (771)
|||.-
T Consensus 257 EiN~R 261 (380)
T 3ax6_A 257 EIAPR 261 (380)
T ss_dssp EEESS
T ss_pred EecCC
Confidence 99964
No 25
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.37 E-value=6.7e-12 Score=133.73 Aligned_cols=229 Identities=14% Similarity=0.194 Sum_probs=142.7
Q ss_pred ccceeecc-ccCCCChHHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 004147 56 ICDCLIAF-YSSGYPLEKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (771)
Q Consensus 56 ~cd~lIsf-~s~GfpL~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (771)
.+|+.+.- |+..----....+++..+ ||+-++..+..+++||..+.++|+++|||+|++..+.+... ...
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~--------~~~ 169 (364)
T 3i12_A 98 TVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNR--------HAF 169 (364)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEETTTG--------GGC
T ss_pred CCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEcccc--------chh
Confidence 35665544 432211114566777877 56667789999999999999999999999999999976310 001
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCceeE
Q 004147 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVK 212 (771)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIK 212 (771)
+...+ -..+++|+|+||..|. .|.|+. ++.|.... ..-+. ..+.+..+|+||||+ |+++.
T Consensus 170 ~~~~~-~~~lg~PvvVKP~~gg-----------ss~Gv~----~v~~~~el-~~a~~~a~~~~~~vlVEe~I~--G~E~~ 230 (364)
T 3i12_A 170 SFAEV-ESRLGLPLFVKPANQG-----------SSVGVS----KVANEAQY-QQAVALAFEFDHKVVVEQGIK--GREIE 230 (364)
T ss_dssp CHHHH-HHHHCSSEEEEETTCC-----------TTTTCE----EESSHHHH-HHHHHHHHHHCSEEEEEECCC--SEEEE
T ss_pred hHHHH-HHhcCCCEEEEECCCC-----------CCcCeE----EeCCHHHH-HHHHHHHHhcCCcEEEEcCcC--CeEEE
Confidence 11111 1235689999999885 334442 13222211 11011 123467899999997 79999
Q ss_pred EEEECCce---eEEEeeeCCCCCCeeee--cC-CC--CceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEee-C
Q 004147 213 VYTVGPEY---AHAEARKSPVVDGVVMR--NP-DG--KEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRC-E 278 (771)
Q Consensus 213 VytVG~~~---vhAe~RKSP~~DG~vrr--N~-~g--ke~r~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs-~ 278 (771)
|.++|+.. ....... |. ++.+.. .. +| .....|..|++ +-+++|.++++++|. .+++||++.+ +
T Consensus 231 v~vl~~~~~~~~~~~ei~-~~-~~~~~~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~ 308 (364)
T 3i12_A 231 CAVLGNDNPQASTCGEIV-LN-SEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTAD 308 (364)
T ss_dssp EEEEESSSCEEEEEEEEE-CC-TTCC--TTTTSGGGGCEEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTT
T ss_pred EEEEeCCCceEeeeEEEe-cC-CCccCHHHcccCCCceEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEecC
Confidence 99998763 2222222 21 332222 11 22 23344667776 456789999999999 5999999988 5
Q ss_pred CCcEEEecCCc------ccc-----ccccccHHHHHHHHHHHHHHh
Q 004147 279 GRSYVCDVNGW------SFV-----KNSYKYYDDAACVLRKMFLEA 313 (771)
Q Consensus 279 g~syVcDVNGw------SFV-----K~n~kYYddca~iL~~~~l~~ 313 (771)
|.+||+|||-. |.+ -....|-+-|.+||..-+-+.
T Consensus 309 g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~li~~a~~~~ 354 (364)
T 3i12_A 309 NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELALERH 354 (364)
T ss_dssp CCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 66999999932 322 134466677777776655443
No 26
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.36 E-value=1.6e-12 Score=134.28 Aligned_cols=190 Identities=16% Similarity=0.198 Sum_probs=119.0
Q ss_pred cceeeccccCCCCh-HHHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 004147 57 CDCLIAFYSSGYPL-EKAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (771)
Q Consensus 57 cd~lIsf~s~GfpL-~kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (771)
+|++|+.+....++ ....+.++..+ |++.|+.....+++||..+.++|+++|||+|++... .+ +..+
T Consensus 73 ~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~-~~----------~~~~ 141 (331)
T 2pn1_A 73 VTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYAT-MA----------SFEE 141 (331)
T ss_dssp CCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEESS-HH----------HHHH
T ss_pred CCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEEec-HH----------Hhhh
Confidence 57777654333332 33445565555 477899999999999999999999999999998652 11 1111
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 004147 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (771)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVy 214 (771)
++ ....+++|+|+||..|. .|.|+. + +.|... +.. .++....+|+||||+ |+.+.|.
T Consensus 142 ~~--~~~~~~~P~vvKp~~g~-----------g~~gv~-~---v~~~~e-l~~---~~~~~~~~lvee~i~--G~e~~v~ 198 (331)
T 2pn1_A 142 AL--AAGEVQLPVFVKPRNGS-----------ASIEVR-R---VETVEE-VEQ---LFSKNTDLIVQELLV--GQELGVD 198 (331)
T ss_dssp HH--HTTSSCSCEEEEESBC------------------------------------------CEEEEECCC--SEEEEEE
T ss_pred hh--hcccCCCCEEEEeCCCC-----------CCCCeE-E---eCCHHH-HHH---HHHhCCCeEEEecCC--CcEEEEE
Confidence 22 11235689999999987 344553 3 322221 111 233456899999998 6777777
Q ss_pred EEC----CceeEEEeeeCCCCCCeeeecCCCCce-eeeeeCCHHHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEEEecCC
Q 004147 215 TVG----PEYAHAEARKSPVVDGVVMRNPDGKEV-RYPVLLTPNEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVCDVNG 288 (771)
Q Consensus 215 tVG----~~~vhAe~RKSP~~DG~vrrN~~gke~-r~pv~Lt~eEk~iA~ka~~afgq-~VcGfDLLRs~g~syVcDVNG 288 (771)
+++ ++++++..|.. +.. .+|.. ..+..+.++-.++|.++++++|. .+++||++..+|++||+|||-
T Consensus 199 ~~~d~~~G~~~~~~~~~~------~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~~g~~~~iEiN~ 270 (331)
T 2pn1_A 199 AYVDLISGKVTSIFIKEK------LTM--RAGETDKSRSVLRDDVFELVEHVLDGSGLVGPLDFDLFDVAGTLYLSEINP 270 (331)
T ss_dssp EEECTTTCCEEEEEEEEE------EEE--ETTEEEEEEEECCHHHHHHHHHHHTTTCCCEEEEEEEEEETTEEEEEEEES
T ss_pred EEEecCCCeEEEEEEEEE------EEe--cCCceeEeEEeccHHHHHHHHHHHHHhCCcceEEEEEEEcCCCEEEEEEeC
Confidence 665 56665554432 110 11222 22335789999999999999999 689999997788899999996
No 27
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.36 E-value=1.4e-12 Score=137.52 Aligned_cols=195 Identities=17% Similarity=0.135 Sum_probs=128.8
Q ss_pred ccceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
.||++++.+ ++++..++++++..+ ++.|+..+..+++||..+.++|+++|||+|++..+... ++.
T Consensus 59 ~~d~v~~~~--e~~~~~~~~~l~~~g-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~~ 123 (369)
T 3aw8_A 59 GLALVTYEF--ENVPVEAARRLEGRL-PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFHPVDGP------------EDL 123 (369)
T ss_dssp TCSEEEECC--TTCCHHHHHHHHHHS-CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEEEESSH------------HHH
T ss_pred CCCEEEECC--CCcCHHHHHHHHHcC-CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCceeeCCH------------HHH
Confidence 478777655 445567778888888 89999999999999999999999999999999988542 122
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 004147 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVyt 215 (771)
.... ..+++|+|+||..|. | .|.|+. + +.|... +..-...+ .+..+|+||||+. |+++.|.+
T Consensus 124 ~~~~-~~~g~P~vvKp~~~~------~----~g~Gv~-~---v~~~~e-l~~~~~~~-~~~~~lvEe~i~~-g~e~sv~~ 185 (369)
T 3aw8_A 124 EEGL-KRVGLPALLKTRRGG------Y----DGKGQA-L---VRTEEE-ALEALKAL-GGRGLILEGFVPF-DREVSLLA 185 (369)
T ss_dssp HHHH-TTTCSSEEEEECCC----------------EE-E---ECSHHH-HHHHHTTT-CSSSEEEEECCCC-SEEEEEEE
T ss_pred HHHH-HHcCCCEEEEEcCCC------C----CcceEE-E---ECCHHH-HHHHHHhc-CCCcEEEEEcCCC-CEEEEEEE
Confidence 2211 125689999999875 1 122332 1 222211 11000011 2567999999985 89999998
Q ss_pred ECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCH----HHHHHHHHHHHHhcCc-eeeEeEEeeCCCcEEEec
Q 004147 216 VGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTP----NEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDV 286 (771)
Q Consensus 216 VG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~-Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~g~syVcDV 286 (771)
+++ +++ +..+ ...+.++..+...-.|.. |++ +-+++|.++++++|.. ++++|++.+.|++||+||
T Consensus 186 ~~d~~G~~~-~~~~-----~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~~~~~viEi 259 (369)
T 3aw8_A 186 VRGRTGEVA-FYPL-----VENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQVGEELLFNEM 259 (369)
T ss_dssp EECTTSCEE-ECCC-----EEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTEEEEEEE
T ss_pred EECCCCCEE-EECC-----eeeeeeCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEECCcEEEEEE
Confidence 874 333 2211 112223222222233555 776 4577889999999996 999999998888999999
Q ss_pred CCc
Q 004147 287 NGW 289 (771)
Q Consensus 287 NGw 289 (771)
|--
T Consensus 260 N~R 262 (369)
T 3aw8_A 260 APR 262 (369)
T ss_dssp ESS
T ss_pred eCC
Confidence 953
No 28
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.36 E-value=1.4e-12 Score=138.42 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=124.7
Q ss_pred HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 004147 72 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (771)
Q Consensus 72 kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (771)
....++++.+ ||+=.+..+..++.||..+.++|+++|||+|++..+.+.. ....+.---..+++|+|+|
T Consensus 114 ~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~~~~~~~----------~~~~~~~~~~~lg~PvvVK 183 (357)
T 4fu0_A 114 TLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFN----------EEAAMKEIEANLTYPLFIK 183 (357)
T ss_dssp HHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEEEEEGGG----------HHHHHHHHHHHCCSSEEEE
T ss_pred HHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEEeecCCC----------hHHHHHHHHHhcCCCEEEE
Confidence 4456777888 6777999999999999999999999999999999987631 1111111112467899999
Q ss_pred eccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEE-----E
Q 004147 151 PVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHA-----E 224 (771)
Q Consensus 151 pv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhA-----e 224 (771)
|..|. .|.|+. ++.|.... ..... ..+.+..++.|+||+ |+.+-|.++|.....+ .
T Consensus 184 P~~gg-----------~s~Gv~----~v~~~~el-~~~~~~a~~~~~~vlvE~~i~--G~e~~v~vl~~~~~~~~~v~~~ 245 (357)
T 4fu0_A 184 PVRAG-----------SSFGIT----KVIEKQEL-DAAIELAFEHDTEVIVEETIN--GFEVGCAVLGIDELIVGRVDEI 245 (357)
T ss_dssp ETTCS-----------SSTTCE----EESSHHHH-HHHHHHHTTTCSEEEEEECCC--SEEEEEEEEESSSEEECCCEEE
T ss_pred ECCCC-----------CCCceE----EeccHHhH-HHHHHHHhccCCeEEEEEecC--CEEEEEEEEecCCceEEEEEEE
Confidence 99986 444543 23332221 11111 234567899999994 8999999888764322 1
Q ss_pred eeeCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHhcC-ceeeEeEEee-CCCcEEEecCCc
Q 004147 225 ARKSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAFRQ-AVCGFDLLRC-EGRSYVCDVNGW 289 (771)
Q Consensus 225 ~RKSP~~DG~vrrN~~gke~r~pv~Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs-~g~syVcDVNGw 289 (771)
.+.....|-.-..+...-+...|..|+++. +++|.++++++|. .+|+||++.+ +|.+||+|||-.
T Consensus 246 ~~~~~~~d~~~k~~~~~~~~~~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~dg~~~vlEvNt~ 316 (357)
T 4fu0_A 246 ELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTPSGEIVFNEVNTI 316 (357)
T ss_dssp EECHHHHTSCSBCSSCCEEEESSCSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESS
T ss_pred EcccccccccccccCCCceEecCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeCCCCEEEEEEeCC
Confidence 111110110000111122234467788754 5789999999998 4999999887 566999999943
No 29
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.36 E-value=8.2e-12 Score=134.81 Aligned_cols=213 Identities=15% Similarity=0.240 Sum_probs=137.2
Q ss_pred HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 004147 72 KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (771)
Q Consensus 72 kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (771)
.....+++.+ ||+-|+..+..+++||..+.++|+++|||+|++..+.+... ...+...+ -..+++|+|+|
T Consensus 134 ~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~--------~~~~~~~~-~~~lg~PvvVK 204 (386)
T 3e5n_A 134 SLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTA--------AHADVDTL-IAQLGLPLFVK 204 (386)
T ss_dssp HHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCCEEEEEHHHH--------TTCCHHHH-HHHHCSSEEEE
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEEEEeCccc--------chhhHHHH-HHhcCCCEEEE
Confidence 3556777777 67778999999999999999999999999999999976310 00011111 12356899999
Q ss_pred eccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEEEEECCceeEEE---ee
Q 004147 151 PVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAE---AR 226 (771)
Q Consensus 151 pv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe---~R 226 (771)
|..|. .|.|+. ++.|...... -+. ..+.+..+|+||||+ |+++.|-++|+....+. .+
T Consensus 205 P~~gg-----------ss~Gv~----~v~~~~el~~-a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~~~gei 266 (386)
T 3e5n_A 205 PANQG-----------SSVGVS----QVRTADAFAA-ALALALAYDHKVLVEAAVA--GREIECAVLGNAVPHASVCGEV 266 (386)
T ss_dssp ESBSC-----------SSTTCE----EECSGGGHHH-HHHHHTTTCSEEEEEECCC--SEEEEEEEECSSSCEEEEEEEE
T ss_pred ECCCC-----------cCCCEE----EECCHHHHHH-HHHHHHhCCCcEEEEcCCC--CeEEEEEEEeCCCceEEEeEEE
Confidence 99985 333442 2333322111 111 123567899999998 79999999998753332 33
Q ss_pred eCCCCCC--eeeecC-CC--CceeeeeeCCHH----HHHHHHHHHHHhcCc-eeeEeEEee-CCCcEEEecC---Cc---
Q 004147 227 KSPVVDG--VVMRNP-DG--KEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVN---GW--- 289 (771)
Q Consensus 227 KSP~~DG--~vrrN~-~g--ke~r~pv~Lt~e----Ek~iA~ka~~afgq~-VcGfDLLRs-~g~syVcDVN---Gw--- 289 (771)
..+ .+ .+.... ++ .....|..|+++ -+++|.++++++|.. +++||++.+ +|.+||+||| |+
T Consensus 267 ~~~--~~~~d~~~ky~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~ 344 (386)
T 3e5n_A 267 VVH--DAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEVNTLPGFTRI 344 (386)
T ss_dssp CC-------------------CEESSCSSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred EeC--CcccchhcccCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCcEEEEEeECCCCCCcc
Confidence 322 23 122222 22 334446777774 468999999999997 999999988 4569999999 43
Q ss_pred ccc-----ccccccHHHHHHHHHHHHHHh
Q 004147 290 SFV-----KNSYKYYDDAACVLRKMFLEA 313 (771)
Q Consensus 290 SFV-----K~n~kYYddca~iL~~~~l~~ 313 (771)
|.+ .....|-+-|.+|+..-+.+.
T Consensus 345 S~~p~~~~~~Gi~~~~li~~li~~a~~r~ 373 (386)
T 3e5n_A 345 SVYPKLWQASGLDYRGLITRLIELALERH 373 (386)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 222 123366666777776665543
No 30
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.35 E-value=1.2e-12 Score=138.27 Aligned_cols=197 Identities=17% Similarity=0.233 Sum_probs=128.2
Q ss_pred ccceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccc
Q 004147 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEED 134 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL-~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (771)
.||++++.+. +++..+.+.++..+.++.|+..+..+++||..+.++| +++|||+|++..+... ++
T Consensus 74 ~~d~v~~~~e--~~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~~~~~~------------~~ 139 (391)
T 1kjq_A 74 KPHYIVPEIE--AIATDMLIQLEEEGLNVVPCARATKLTMNREGIRRLAAEELQLPTSTYRFADSE------------SL 139 (391)
T ss_dssp CCSEEEECSS--CSCHHHHHHHHHTTCEESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEEEESSH------------HH
T ss_pred CCCEEEECCC--cCCHHHHHHHHhCCCCcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCeeeeCCH------------HH
Confidence 4788877653 4444566778788877899999999999999999999 8999999999987542 12
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-----cCcceEEeeccCCCCc
Q 004147 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-----REGSYIYEEFMPTGGT 209 (771)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-----~~gsyIyEEFi~t~G~ 209 (771)
.... -..+++|+|+||..|. .|.|+. + +.|.. ++..-..... .+..+|+||||+. |.
T Consensus 140 ~~~~-~~~~g~P~vvKp~~g~-----------gg~Gv~-~---v~~~~-el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~ 201 (391)
T 1kjq_A 140 FREA-VADIGYPCIVKPVMSS-----------SGKGQT-F---IRSAE-QLAQAWKYAQQGGRAGAGRVIVEGVVKF-DF 201 (391)
T ss_dssp HHHH-HHHHCSSEEEEESCC--------------CCCE-E---ECSGG-GHHHHHHHHHHHSGGGCCCEEEEECCCC-SE
T ss_pred HHHH-HHhcCCCEEEEeCCCC-----------CCCCeE-E---ECCHH-HHHHHHHHHHhhcccCCCCEEEEEecCC-Ce
Confidence 1111 1135689999999875 333432 1 22211 1111000111 2568999999986 88
Q ss_pred eeEEEEECCceeEEEeeeCCCCCCeeeecCCCCceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCCcEEE
Q 004147 210 DVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSYVC 284 (771)
Q Consensus 210 DIKVytVG~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~g~syVc 284 (771)
++.|.+++..--. .-.|.. +.++.+.+..+.-.|..|++ +-+++|.++++++|. .++++|++.+.+++||+
T Consensus 202 E~sv~~~~~~~g~---~~~~~~-~~~~~~~~~~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~~~~vi 277 (391)
T 1kjq_A 202 EITLLTVSAVDGV---HFCAPV-GHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGDEVIFS 277 (391)
T ss_dssp EEEEEEEEETTEE---EECCCE-EEEEETTEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEEeCCCe---EEccCc-ceEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCcEEEE
Confidence 9999888531110 011211 11222111112223667886 356789999999998 79999999997799999
Q ss_pred ecCC
Q 004147 285 DVNG 288 (771)
Q Consensus 285 DVNG 288 (771)
|||.
T Consensus 278 EiN~ 281 (391)
T 1kjq_A 278 EVSP 281 (391)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9995
No 31
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.34 E-value=2.6e-12 Score=138.47 Aligned_cols=194 Identities=15% Similarity=0.176 Sum_probs=126.6
Q ss_pred ccceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHH-HhCCCCCCCEEEEeccCCCccccccccccc
Q 004147 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYGIPVPRYALVNREVPYQELDYFIEEED 134 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL-~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (771)
.||++++.+. +++..+.+.++..+.++.|+..+..+++||..+.++| +++|||+|++..+... ++
T Consensus 82 ~~d~V~~~~e--~~~~~~~~~l~~~gi~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~~~~~~------------~~ 147 (433)
T 2dwc_A 82 KPDAIIPEIE--AINLDALFEFEKDGYFVVPNARATWIAMHRERLRETLVKEAKVPTSRYMYATTL------------DE 147 (433)
T ss_dssp CCSEEEECSS--CSCHHHHHHHHHTTCCBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEEEESSH------------HH
T ss_pred CCCEEEECcc--cCCHHHHHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCeeEeCCH------------HH
Confidence 4788877663 4445667778778877889999999999999999999 8999999999988542 12
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-----cCcceEEeeccCCCCc
Q 004147 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-----REGSYIYEEFMPTGGT 209 (771)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-----~~gsyIyEEFi~t~G~ 209 (771)
.... -..+++|+|+||..|. .|-|+. .+.|... +..-..... .++.+|+||||+. |.
T Consensus 148 ~~~~-~~~~g~P~vvKp~~g~-----------gg~Gv~----~v~~~~e-l~~~~~~~~~~~~~~~~~~lvEe~i~~-g~ 209 (433)
T 2dwc_A 148 LYEA-CEKIGYPCHTKAIMSS-----------SGKGSY----FVKGPED-IPKAWEEAKTKARGSAEKIIVEEHIDF-DV 209 (433)
T ss_dssp HHHH-HHHHCSSEEEEECCC-----------------E----EECSGGG-HHHHHHC---------CCEEEEECCCC-SE
T ss_pred HHHH-HHhcCCCEEEEECCCc-----------CCCCeE----EECCHHH-HHHHHHHHHhhcccCCCCEEEEccCCC-Ce
Confidence 1111 1135689999999875 233332 2222221 110000111 2567999999986 88
Q ss_pred eeEEEEEC-----CceeEEE----eeeCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhcC-ceeeEeEE
Q 004147 210 DVKVYTVG-----PEYAHAE----ARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQ-AVCGFDLL 275 (771)
Q Consensus 210 DIKVytVG-----~~~vhAe----~RKSP~~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~~afgq-~VcGfDLL 275 (771)
++.|.+++ ++.++.. ..+. .+|... +.-.|..|+++ -+++|.++++++|. .++++|++
T Consensus 210 E~sv~~~~~~~~~G~~~~~~~~~~~~~~--~~~~~~------~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~ 281 (433)
T 2dwc_A 210 EVTELAVRHFDENGEIVTTFPKPVGHYQ--IDGDYH------ASWQPAEISEKAEREVYRIAKRITDVLGGLGIFGVEMF 281 (433)
T ss_dssp EEEECCEEEECTTSCEEEEEECCEEEEE--SSSSEE------EEEESCCCCHHHHHHHHHHHHHHHHHHCSSEECEEEEE
T ss_pred eEEEEEEecccCCCCEeEEEecccceEE--EcCEEE------EEEcCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEE
Confidence 99988773 3422221 1111 133332 12236678874 47889999999998 79999999
Q ss_pred eeCCCcEEEecCCc
Q 004147 276 RCEGRSYVCDVNGW 289 (771)
Q Consensus 276 Rs~g~syVcDVNGw 289 (771)
.+.+++||+|||.-
T Consensus 282 ~~~~~~~viEiN~R 295 (433)
T 2dwc_A 282 VKGDKVWANEVSPR 295 (433)
T ss_dssp EETTEEEEEEEESS
T ss_pred EeCCcEEEEEEeCC
Confidence 99789999999953
No 32
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.34 E-value=1.3e-12 Score=140.15 Aligned_cols=200 Identities=16% Similarity=0.170 Sum_probs=125.2
Q ss_pred cceeeccccCCCChHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
+|++++....+. +..+.+.++..+. +.-|+..+..+++||..+.++|+++|||+|++..+... ++.
T Consensus 62 ~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~~~ 128 (417)
T 2ip4_A 62 IDLTLVGPEAPL-VEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYRVFREP------------LEA 128 (417)
T ss_dssp CCEEEECSSHHH-HTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEEEESSH------------HHH
T ss_pred CCEEEECCchHH-HHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCeeeeCCH------------HHH
Confidence 566665432211 2344556666674 45599999999999999999999999999999887542 122
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc---cCcceEEeeccCCCCceeE
Q 004147 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR---REGSYIYEEFMPTGGTDVK 212 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r---~~gsyIyEEFi~t~G~DIK 212 (771)
.... ..+++|+|+||..|. .|.|+. + +.|.+ ++..-+.... .+..+|+||||+ |.++.
T Consensus 129 ~~~~-~~~~~P~vvKp~~~~-----------gg~Gv~-~---v~~~~-el~~~~~~~~~~~~~~~~lvEe~i~--g~E~s 189 (417)
T 2ip4_A 129 LAYL-EEVGVPVVVKDSGLA-----------AGKGVT-V---AFDLH-QAKQAVANILNRAEGGEVVVEEYLE--GEEAT 189 (417)
T ss_dssp HHHH-HHHCSSEEEECTTSC-----------SSTTCE-E---ESCHH-HHHHHHHHHTTSSSCCCEEEEECCC--SCEEE
T ss_pred HHHH-HHcCCCEEEEECCCC-----------CCCCEE-E---eCCHH-HHHHHHHHHHhhccCCeEEEEECcc--CcEEE
Confidence 1111 125589999999986 333442 2 21111 1110000111 236799999998 88999
Q ss_pred EEEEC-CceeEEE--eee-CCCCCCeeeecCCCCceeeeeeCCHHHH-----HHHHHHHHHh-----c-CceeeEeEEee
Q 004147 213 VYTVG-PEYAHAE--ARK-SPVVDGVVMRNPDGKEVRYPVLLTPNEK-----QMAREVCIAF-----R-QAVCGFDLLRC 277 (771)
Q Consensus 213 VytVG-~~~vhAe--~RK-SP~~DG~vrrN~~gke~r~pv~Lt~eEk-----~iA~ka~~af-----g-q~VcGfDLLRs 277 (771)
|.+++ ++.+++. .|. .+..++...-|..+-+.-.|..|+++.. ++|.++++++ + ..+++||++.+
T Consensus 190 v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~ 269 (417)
T 2ip4_A 190 VLALTDGETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLT 269 (417)
T ss_dssp EEEEESSSCEEECCCBEECCEEETTTEEEECSCSEEEESCCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEC
T ss_pred EEEEEeCCEEEEcchheechhhccCCCCCcCCCCeeeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEe
Confidence 98883 3445543 232 2223444334444444456777888643 3477778876 4 35677999998
Q ss_pred CCCcEEEecCC
Q 004147 278 EGRSYVCDVNG 288 (771)
Q Consensus 278 ~g~syVcDVNG 288 (771)
.+++||+|||-
T Consensus 270 ~~g~~viEiN~ 280 (417)
T 2ip4_A 270 REGPKVLEFNA 280 (417)
T ss_dssp SSCEEEEEEES
T ss_pred CCCeEEEEEec
Confidence 77799999995
No 33
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.33 E-value=8.6e-12 Score=133.94 Aligned_cols=204 Identities=16% Similarity=0.197 Sum_probs=130.3
Q ss_pred cceeeccccCCCChH-HHHHHHHhcC-CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 004147 57 CDCLIAFYSSGYPLE-KAESYATLRK-PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (771)
Q Consensus 57 cd~lIsf~s~GfpL~-kai~y~~lr~-p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (771)
+|+.+.-..-.+--+ ....++++.+ ||+-++..+..++.||..+.++|+++|||+|++..+.+.. ...
T Consensus 110 ~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~~~~~~~----------~~~ 179 (373)
T 3lwb_A 110 VDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPR----------STL 179 (373)
T ss_dssp CSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCCEEEECTTC----------CCC
T ss_pred ccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEEECcc----------cch
Confidence 566655542111111 4556777777 5556678999999999999999999999999999997631 000
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-ccccCcceEEeeccCCCCceeEE
Q 004147 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-RVRREGSYIYEEFMPTGGTDVKV 213 (771)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-~~r~~gsyIyEEFi~t~G~DIKV 213 (771)
... .-..+++|+|+||..|. .|-|+. ++.|....-. -+. ..+.+..+|+||||+ |+++.|
T Consensus 180 ~~~-~~~~lg~PvvVKP~~gg-----------ss~GV~----~v~~~~eL~~-a~~~a~~~~~~vlVEe~I~--G~E~~v 240 (373)
T 3lwb_A 180 HRQ-ECERLGLPVFVKPARGG-----------SSIGVS----RVSSWDQLPA-AVARARRHDPKVIVEAAIS--GRELEC 240 (373)
T ss_dssp CHH-HHHHHCSCEEEEESBCS-----------TTTTCE----EECSGGGHHH-HHHHHHTTCSSEEEEECCE--EEEEEE
T ss_pred hHH-HHHhcCCCEEEEeCCCC-----------CCCCEE----EeCCHHHHHH-HHHHHHhcCCCEEEeCCCC--CeEEEE
Confidence 001 12346789999999986 333442 2333322111 111 123577899999998 899999
Q ss_pred EEECCcee-----EEEeeeCCCCCC------eeeecCCCC--ceeeeeeCCH----HHHHHHHHHHHHhcC-ceeeEeEE
Q 004147 214 YTVGPEYA-----HAEARKSPVVDG------VVMRNPDGK--EVRYPVLLTP----NEKQMAREVCIAFRQ-AVCGFDLL 275 (771)
Q Consensus 214 ytVG~~~v-----hAe~RKSP~~DG------~vrrN~~gk--e~r~pv~Lt~----eEk~iA~ka~~afgq-~VcGfDLL 275 (771)
-++|.... ....+...-..+ .+..+.+.+ +...|..|++ +-+++|.++++++|. .+++||+.
T Consensus 241 ~vl~~~~~~~~~~~~~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~ 320 (373)
T 3lwb_A 241 GVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDFF 320 (373)
T ss_dssp EEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred EEEECCCCceEEeeeeEEEccCCCCccccccchhhcccCCCceEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEE
Confidence 99987632 222222210011 122222322 2334677775 567899999999999 59999999
Q ss_pred eeCCCcEEEecCCc
Q 004147 276 RCEGRSYVCDVNGW 289 (771)
Q Consensus 276 Rs~g~syVcDVNGw 289 (771)
.+.++.||+|||-.
T Consensus 321 ~~~dg~~vlEIN~~ 334 (373)
T 3lwb_A 321 LTDDGPVINEINTM 334 (373)
T ss_dssp EETTEEEEEEEESS
T ss_pred EECCCCEEEEecCC
Confidence 98544499999944
No 34
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.28 E-value=5.3e-12 Score=134.23 Aligned_cols=196 Identities=12% Similarity=0.130 Sum_probs=125.2
Q ss_pred cceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (771)
+|.+++. +.-.++..+.+.++..+. ..|+.+...+++||..+.++|+++|||+|++..+... ++..
T Consensus 72 ~d~v~~~-~~~~~~~~~a~~~~~~gl-~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~~~~~~------------~~~~ 137 (403)
T 4dim_A 72 LDGAATC-CLDTGIVSLARICDKENL-VGLNEEAAIMCGDKYKMKEAFKKYNVNTARHFVVRNE------------NELK 137 (403)
T ss_dssp CSEEECC-SCSTTHHHHHHHHHHHTC-SSCCHHHHHHHHCHHHHHHHHHHHTCCCCCEECCCSH------------HHHH
T ss_pred CCEEEeC-CcchhHHHHHHHHHHcCc-CCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEEEeCCH------------HHHH
Confidence 5777764 223344444555566664 5799999999999999999999999999999877532 1221
Q ss_pred eecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccccc---ccCcceEEeeccCCCCceeEE
Q 004147 137 EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RREGSYIYEEFMPTGGTDVKV 213 (771)
Q Consensus 137 ~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~---r~~gsyIyEEFi~t~G~DIKV 213 (771)
.. -..+++|+|+||..|. .|.|+. .+.|... +..-.... ..++.+|+||||+-.--+|.+
T Consensus 138 ~~-~~~~g~P~vvKp~~g~-----------gg~Gv~----~v~~~~e-l~~~~~~~~~~~~~~~~lvEe~i~g~e~sv~~ 200 (403)
T 4dim_A 138 NA-LENLKLPVIVKATDLQ-----------GSKGIY----IAKKEEE-AIDGFNETMNLTKRDYCIVEEFIEGYEFGAQA 200 (403)
T ss_dssp HH-HHTSCSSEEEECSCC----------------CE----EESSHHH-HHHHHHHHHHHCSSSCCEEEECCCSEEEEEEE
T ss_pred HH-HhcCCCCEEEEECCCC-----------CCCCEE----EECCHHH-HHHHHHHHHhcCcCCcEEEEEccCCcEEEEEE
Confidence 11 1235689999999986 333332 2222211 11000011 135779999999854456677
Q ss_pred EEECCceeEEEeeeCCCCCCeeeecCC-CC--ceeeeeeCCHHH----HHHHHHHHHHhcCc--eeeEeEEeeCCCcEEE
Q 004147 214 YTVGPEYAHAEARKSPVVDGVVMRNPD-GK--EVRYPVLLTPNE----KQMAREVCIAFRQA--VCGFDLLRCEGRSYVC 284 (771)
Q Consensus 214 ytVG~~~vhAe~RKSP~~DG~vrrN~~-gk--e~r~pv~Lt~eE----k~iA~ka~~afgq~--VcGfDLLRs~g~syVc 284 (771)
++.++++...... +.+..+.+ +. +...|..|+++. .++|.++++++|.. +++||++.++|++||+
T Consensus 201 ~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~~~~~~i 274 (403)
T 4dim_A 201 FVYKNDVLFVMPH------GDETYMSHTAVPVGHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILKDNEVYII 274 (403)
T ss_dssp EEETTEEEEEEEE------EEEEEESSSEEEEEEEESCCSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEETTEEEEE
T ss_pred EEECCEEEEEEEe------cceeccCCCCcceeEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEECCcEEEE
Confidence 7777776543311 11111111 11 233567788765 67999999999986 7899999998999999
Q ss_pred ecCCc
Q 004147 285 DVNGW 289 (771)
Q Consensus 285 DVNGw 289 (771)
|||.-
T Consensus 275 EiN~R 279 (403)
T 4dim_A 275 ELTGR 279 (403)
T ss_dssp EEESS
T ss_pred EEcCC
Confidence 99954
No 35
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.28 E-value=4.5e-12 Score=136.58 Aligned_cols=204 Identities=17% Similarity=0.175 Sum_probs=120.8
Q ss_pred ccceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
.||++++..-.+ .+..+.+.+.. ++.|+.++..+++||..+.++|+++|||+|++..+... ++.
T Consensus 70 ~~d~V~~~~E~~-~~a~~~~~l~~---~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~e~ 133 (412)
T 1vkz_A 70 EEDIVIPGSEEF-LVEGVSNWRSN---VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETP------------EEL 133 (412)
T ss_dssp SSCEECCSSGGG-TCC-----CTT---BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSH------------HHH
T ss_pred CCCEEEECCcHH-HHHHHHHHhhh---hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEEEECCH------------HHH
Confidence 367777643222 22344454433 67799999999999999999999999999999877542 122
Q ss_pred eeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 004147 136 VEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVy 214 (771)
...- ..+++|+|+||..|. -.++++..... -....++.+-+.+.. +...+.+|+||||+ |+++.|.
T Consensus 134 ~~~~-~~~g~PvvvKp~~~~gg~Gv~~v~~~~---el~~a~~~~~~~~~~-------~g~~~~vlvEe~i~--G~E~sv~ 200 (412)
T 1vkz_A 134 REKI-KKFSPPYVIKADGLARGKGVLILDSKE---ETIEKGSKLIIGELI-------KGVKGPVVIDEFLA--GNELSAM 200 (412)
T ss_dssp HHHH-TTSCSSEEEEESSCCSSCCEEEESSHH---HHHHHHHHHHHTSSS-------TTCCSCEEEEECCC--SEEEEEE
T ss_pred HHHH-HhcCCCEEEEeCCCCCCCCEEEECCHH---HHHHHHHHHHhhccc-------cCCCCeEEEEECCc--CcEEEEE
Confidence 2211 125689999999985 12222221110 011111111000000 11224899999998 8999998
Q ss_pred EEC-CceeEEEe--e-eCCCCCCeeeecCCCCceeeeeeCCHHH----HHHHHHHHHHh-----cC-ceeeEeEEeeCCC
Q 004147 215 TVG-PEYAHAEA--R-KSPVVDGVVMRNPDGKEVRYPVLLTPNE----KQMAREVCIAF-----RQ-AVCGFDLLRCEGR 280 (771)
Q Consensus 215 tVG-~~~vhAe~--R-KSP~~DG~vrrN~~gke~r~pv~Lt~eE----k~iA~ka~~af-----gq-~VcGfDLLRs~g~ 280 (771)
+++ ++.+.+.. + ..+..++...-|+.+-+.-.|..|+++. +++|.++++++ +. .++++|++.+.++
T Consensus 201 ~~~dg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g 280 (412)
T 1vkz_A 201 AVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGD 280 (412)
T ss_dssp EEEETTEEEECCCCEECCEEETTTEEEECSCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTE
T ss_pred EEECCCEEEEeeeeEeeeeccCCCCCCCCCCceEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEECCC
Confidence 873 33333322 1 1111233333333333344577788754 67899999999 33 6777899998666
Q ss_pred cEEEecCC
Q 004147 281 SYVCDVNG 288 (771)
Q Consensus 281 syVcDVNG 288 (771)
+||+|||-
T Consensus 281 ~~viEiN~ 288 (412)
T 1vkz_A 281 PYILEYNV 288 (412)
T ss_dssp EEEEEEES
T ss_pred cEEEEEec
Confidence 99999995
No 36
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.27 E-value=3.6e-11 Score=128.30 Aligned_cols=192 Identities=17% Similarity=0.251 Sum_probs=126.8
Q ss_pred ccceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
.||++ ++-....+. .++++++..+. +.|+.++..+++||....++|+++|||+|++..+... ++.
T Consensus 75 ~~dvI-~~~~e~~~~-~~~~~l~~~g~-~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~------------~~~ 139 (389)
T 3q2o_A 75 ISDVV-TYEFENIDY-RCLQWLEKHAY-LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYRLVQNQ------------EQL 139 (389)
T ss_dssp TCSEE-EESCCCCCH-HHHHHHHHHSC-CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEEEESSH------------HHH
T ss_pred hCCEe-eeccccccH-HHHHHHHhhCc-cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCH------------HHH
Confidence 37765 444444555 45566666665 7799999999999999999999999999999988642 122
Q ss_pred eeecCeeccCcEEEeecccc-C-cceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 004147 136 VEVHGNRFWKPFVEKPVHGD-D-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~Ge-d-Hni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKV 213 (771)
... -..+++|+|+||..|. + .++++...... ....++. + .++.+|.||||+ .+.++.|
T Consensus 140 ~~~-~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~e---l~~~~~~--------------~-~~~~~lvEe~i~-g~~E~~v 199 (389)
T 3q2o_A 140 TEA-IAELSYPSVLKTTTGGYDGKGQVVLRSEAD---VDEARKL--------------A-NAAECILEKWVP-FEKEVSV 199 (389)
T ss_dssp HHH-HHHHCSSEEEEESSCCSSSCCEEEESSGGG---HHHHHHH--------------H-HHSCEEEEECCC-CSEEEEE
T ss_pred HHH-HHhcCCCEEEEeCCCCCCCCCeEEECCHHH---HHHHHHh--------------c-CCCCEEEEeccc-CceEEEE
Confidence 221 1235689999999983 2 44444332221 1112221 1 256799999998 3599999
Q ss_pred EEECC---ceeE-EEe-eeCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhcCc-eeeEeEEee-CCCcE
Q 004147 214 YTVGP---EYAH-AEA-RKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRC-EGRSY 282 (771)
Q Consensus 214 ytVG~---~~vh-Ae~-RKSP~~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~~afgq~-VcGfDLLRs-~g~sy 282 (771)
.++++ ++.. ... ...+ +|.+ .+.-.|..|+++ -+++|.++++++|.. +++||++.+ +|.+|
T Consensus 200 ~~~~~~~G~~~~~~~~e~~~~--~g~~------~~~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~dg~~~ 271 (389)
T 3q2o_A 200 IVIRSVSGETKVFPVAENIHV--NNIL------HESIVPARITEELSQKAIAYAKVLADELELVGTLAVEMFATADGEIY 271 (389)
T ss_dssp EEEECTTCCEEECCCEEEEEE--TTEE------EEEEESCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEE
T ss_pred EEEEcCCCCEEEecCeeeEEc--CCce------EEEECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCCEE
Confidence 99864 2111 111 1111 3332 123345567764 467899999999996 999999998 45699
Q ss_pred EEecCCcc
Q 004147 283 VCDVNGWS 290 (771)
Q Consensus 283 VcDVNGwS 290 (771)
|+|||--.
T Consensus 272 viEiNpR~ 279 (389)
T 3q2o_A 272 INELAPRP 279 (389)
T ss_dssp EEEEESSC
T ss_pred EEEeeCCC
Confidence 99999653
No 37
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.25 E-value=3.4e-12 Score=138.90 Aligned_cols=207 Identities=15% Similarity=0.088 Sum_probs=120.9
Q ss_pred cceeeccccCCCChHHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
||++++...... +..+.+.++..+..+ -++..+..+++||..+.++|+++|||+|++..+... ++.
T Consensus 84 ~d~vi~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~~ 150 (451)
T 2yrx_A 84 IDLTIVGPEAPL-ASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSY------------EEA 150 (451)
T ss_dssp CSEEEECSHHHH-HTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCH------------HHH
T ss_pred CCEEEECCchHH-HHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCH------------HHH
Confidence 566665322211 234556666777444 489999999999999999999999999999888542 122
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 004147 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVyt 215 (771)
.... ..+++|+|+||..|.. ...++.-.+.. -....++.+-.. +.|. ..+..+|+||||+ |.++.|.+
T Consensus 151 ~~~~-~~~~~PvVvKp~~~~g-g~Gv~~v~~~~-el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--G~E~sv~~ 218 (451)
T 2yrx_A 151 KAYI-EQKGAPIVIKADGLAA-GKGVTVAQTVE-EALAAAKAALVD-GQFG------TAGSQVVIEEYLE--GEEFSFMA 218 (451)
T ss_dssp HHHH-HHHCSSEEEEECC-----CCEEEESSHH-HHHHHHHHHHHH-SCCB------TTBCCEEEEECCC--SEEEEEEE
T ss_pred HHHH-HhcCCcEEEEeCCCCC-CCcEEEECCHH-HHHHHHHHHHhc-cccC------CCCCeEEEEECCc--CcEEEEEE
Confidence 1111 1245899999999861 11111111110 011111111000 0010 0246799999999 88888877
Q ss_pred E-CCceeEEE--eee-CCCCCCeeeecCCCCceeeeee-CCHHH-----HHHHHHHHHHh---cC---ceeeEeEEeeCC
Q 004147 216 V-GPEYAHAE--ARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNE-----KQMAREVCIAF---RQ---AVCGFDLLRCEG 279 (771)
Q Consensus 216 V-G~~~vhAe--~RK-SP~~DG~vrrN~~gke~r~pv~-Lt~eE-----k~iA~ka~~af---gq---~VcGfDLLRs~g 279 (771)
+ .++.+.+. .|. ....++...-|..+.+.-.|.. |+++. +++|.++++++ |. .+++||++.+.+
T Consensus 219 ~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~ 298 (451)
T 2yrx_A 219 FVNGEKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATAN 298 (451)
T ss_dssp EEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETT
T ss_pred EEcCCEEEEeeeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCC
Confidence 7 33444443 222 2223443333433444445665 88864 33567777776 44 467789999977
Q ss_pred CcEEEecCC
Q 004147 280 RSYVCDVNG 288 (771)
Q Consensus 280 ~syVcDVNG 288 (771)
++||+|||-
T Consensus 299 g~~viEiN~ 307 (451)
T 2yrx_A 299 GPKVIEFNA 307 (451)
T ss_dssp EEEEEEEES
T ss_pred CcEEEEEec
Confidence 799999994
No 38
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.25 E-value=5.6e-12 Score=135.35 Aligned_cols=206 Identities=17% Similarity=0.152 Sum_probs=122.9
Q ss_pred cceeeccccCCCCh-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 004147 57 CDCLIAFYSSGYPL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (771)
Q Consensus 57 cd~lIsf~s~GfpL-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (771)
+|+++... . .++ ..+.+.++..+. +.-|+.....+++||..+.++|+++|||+|++..+... ++
T Consensus 63 ~d~v~~~~-E-~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~ 128 (424)
T 2yw2_A 63 VDFTIVGP-E-APLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYEVFTDF------------EK 128 (424)
T ss_dssp CSEEEECS-H-HHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCH------------HH
T ss_pred CCEEEECC-c-hHHHHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeEEECCH------------HH
Confidence 45555432 1 232 344566666774 44599999999999999999999999999999887542 12
Q ss_pred eeeecCeeccCcEEEeecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 004147 135 FVEVHGNRFWKPFVEKPVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (771)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKV 213 (771)
....- ..+++|+|+||..|. -.++++..... -....++.+-+. +.|. ..+..+|+||||+ |.++.|
T Consensus 129 ~~~~~-~~~~~PvvvKp~~g~gg~Gv~~v~~~~---el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--g~E~sv 195 (424)
T 2yw2_A 129 AKEYV-EKVGAPIVVKADGLAAGKGAVVCETVE---KAIETLDRFLNK-KIFG------KSSERVVIEEFLE--GEEASY 195 (424)
T ss_dssp HHHHH-HHHCSSEEEEESSCCTTCSEEEESSHH---HHHHHHHHHHTS-CTTG------GGGSSEEEEECCC--SEEEEE
T ss_pred HHHHH-HHcCCcEEEEeCCCCCCCCEEEECCHH---HHHHHHHHHHhh-hhcc------CCCCeEEEEECCC--CcEEEE
Confidence 21111 135689999999885 12222221110 011122211110 0010 0246799999998 788888
Q ss_pred EEEC-CceeEE--EeeeC-CCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---cC---ceeeEeEEee
Q 004147 214 YTVG-PEYAHA--EARKS-PVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---RQ---AVCGFDLLRC 277 (771)
Q Consensus 214 ytVG-~~~vhA--e~RKS-P~~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~~af---gq---~VcGfDLLRs 277 (771)
.++. ++.+++ +.|.. ...++...-|+.+-+.-.|.. |+++.. ++|.++++++ |. .+++||++.+
T Consensus 196 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~ 275 (424)
T 2yw2_A 196 IVMINGDRYVPLPTSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMIT 275 (424)
T ss_dssp EEEEETTEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEE
T ss_pred EEEEcCCEEEeecceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEe
Confidence 7763 334443 33322 223443333433333445665 888653 5677888887 43 4667999999
Q ss_pred CCCcEEEecCCc
Q 004147 278 EGRSYVCDVNGW 289 (771)
Q Consensus 278 ~g~syVcDVNGw 289 (771)
.+++||+|||.-
T Consensus 276 ~~g~~viEiN~R 287 (424)
T 2yw2_A 276 KEGPKVLEFNVR 287 (424)
T ss_dssp TTEEEEEEEESS
T ss_pred CCCcEEEEEecC
Confidence 767999999964
No 39
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.24 E-value=2.5e-12 Score=138.00 Aligned_cols=205 Identities=15% Similarity=0.132 Sum_probs=121.4
Q ss_pred cceeeccccCCCC-hHHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 004147 57 CDCLIAFYSSGYP-LEKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (771)
Q Consensus 57 cd~lIsf~s~Gfp-L~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (771)
+|++++... .+ +..+.+.++..+..+ -|+..+..+++||..+.++|+++|||+|++..+... ++
T Consensus 63 ~d~v~~~~E--~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~ 128 (422)
T 2xcl_A 63 VGLTIVGPE--VPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYETFTSF------------DE 128 (422)
T ss_dssp EEEEEECSH--HHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEEEESCH------------HH
T ss_pred CCEEEECCc--HHHHHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeEEECCH------------HH
Confidence 455555322 22 234556666777444 499999999999999999999999999999887542 12
Q ss_pred eeeecCeeccCcEEEeeccccC-cceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEE
Q 004147 135 FVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKV 213 (771)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKV 213 (771)
....- ..++.|+|+||..|.. .++++. .+.. -....++.+-+. +.|. ..+..+|+||||+ |+++.|
T Consensus 129 ~~~~~-~~~~~P~vvKp~~~~~g~Gv~~v--~~~~-el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--g~E~sv 195 (422)
T 2xcl_A 129 AKAYV-QEKGAPIVIKADGLAAGKGVTVA--MTEE-EAIACLHDFLED-EKFG------DASASVVIEEYLS--GEEFSL 195 (422)
T ss_dssp HHHHH-HHHCSSEEEEESSCGGGTCEEEE--SSHH-HHHHHHHHHHTS-CTTG------GGGSSEEEEECCC--SEEEEE
T ss_pred HHHHH-HhcCCCEEEEeCCCCCCCcEEEE--CCHH-HHHHHHHHHHhh-hhcc------CCCCeEEEEECCc--CcEEEE
Confidence 21111 1245899999998851 222222 1110 011122211110 0010 0246799999998 889999
Q ss_pred EEEC-CceeEE--Eeee-CCCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHh---cC---ceeeEeEEee
Q 004147 214 YTVG-PEYAHA--EARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAF---RQ---AVCGFDLLRC 277 (771)
Q Consensus 214 ytVG-~~~vhA--e~RK-SP~~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~~af---gq---~VcGfDLLRs 277 (771)
.++. ++.+++ +.|. ....++...-|+.|-+.-.|.. |+++.. ++|.++++++ |. .+++||++.+
T Consensus 196 ~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~ 275 (422)
T 2xcl_A 196 MAFVKGEKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLT 275 (422)
T ss_dssp EEEEETTEEEECCCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEE
T ss_pred EEEEcCCEEEecceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEe
Confidence 8873 333343 2221 1122332222322323345665 887643 3677788776 44 4567899999
Q ss_pred CCCcEEEecCC
Q 004147 278 EGRSYVCDVNG 288 (771)
Q Consensus 278 ~g~syVcDVNG 288 (771)
.+++||+|||-
T Consensus 276 ~~g~~viEiN~ 286 (422)
T 2xcl_A 276 ENGSKVIEFNA 286 (422)
T ss_dssp TTEEEEEEEES
T ss_pred CCCcEEEEEec
Confidence 77799999995
No 40
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.23 E-value=5.6e-11 Score=125.06 Aligned_cols=176 Identities=14% Similarity=0.167 Sum_probs=122.9
Q ss_pred ccceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
.||+.+..+..-..+..+.+.++..+.++.++.++..+++||..+.++|+++|||+|.+.
T Consensus 63 ~~D~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~-------------------- 122 (363)
T 4ffl_A 63 RVDAVLPVNENLACIEFLNSIKEKFSCPVLFDFEAYRISRDKKKSKDYFKSIGVPTPQDR-------------------- 122 (363)
T ss_dssp SSSEEEECCCCHHHHHHHHHHGGGCSSCBCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBS--------------------
T ss_pred CCCEEEECCCChhHHHHHHHHHHHCCCccCCCHHHHHHhhCHHHHHHHHHhcCCCCCCce--------------------
Confidence 378877766421122334445566677788999999999999999999999999998641
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEE
Q 004147 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYT 215 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVyt 215 (771)
.+++|+|+||..|. .|.|+. .+.|..... .....++.||||. |+.+-|.+
T Consensus 123 ------~ig~P~vvKp~~g~-----------g~~gv~----~v~~~~~~~-------~~~~~~~~ee~i~--g~e~sv~~ 172 (363)
T 4ffl_A 123 ------PSKPPYFVKPPCES-----------SSVGAR----IIYDDKDLE-------GLEPDTLVEEYVE--GEVVSLEV 172 (363)
T ss_dssp ------CSSSCEEEECSSCC-----------TTTTCE----EEC-------------CCCTTCEEEECCC--SEEEEEEE
T ss_pred ------ecCCCEEEEECCCC-----------CCcCeE----EeccHHHhh-------hhccchhhhhhcc--CcEEEEEE
Confidence 13489999999886 344543 233322211 2456789999996 67777766
Q ss_pred ECCcee---EEEeeeCCCCCCeeeecCCCCceeeeeeCCHHHHHHHHHHHHHhcCc-eeeEeEEeeCCCcEEEecCC
Q 004147 216 VGPEYA---HAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMAREVCIAFRQA-VCGFDLLRCEGRSYVCDVNG 288 (771)
Q Consensus 216 VG~~~v---hAe~RKSP~~DG~vrrN~~gke~r~pv~Lt~eEk~iA~ka~~afgq~-VcGfDLLRs~g~syVcDVNG 288 (771)
++..-. +...+. ...+..+...-.|..+.++-+++|.++++++|.. +++||++.+.+++||+|||-
T Consensus 173 ~~d~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~~~~~viEiN~ 242 (363)
T 4ffl_A 173 VGDGSHFAVVKETLV-------HIDETYDCHMVTPLPANPLFRQISHDLAANLPLKGIMDVEAIFGPKGLRVIEIDA 242 (363)
T ss_dssp EEESSCEEECCCEEE-------EECTTSCEEEEEECCCCHHHHHHHHHHHHTTTCEEEEEEEEEEETTEEEEEEEEC
T ss_pred EEECCeEEEEEEEEe-------ccCCcccceeecchhHHHHHHHHHHHHHHhCCccceeeeeeEEeCCeEEEEEEeC
Confidence 643321 111221 1223334445567888999999999999999975 99999999999999999996
No 41
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.20 E-value=2.3e-11 Score=133.15 Aligned_cols=192 Identities=15% Similarity=0.160 Sum_probs=122.6
Q ss_pred HHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 004147 72 KAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (771)
Q Consensus 72 kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (771)
.+.+.++..+..++ |+..+..+++||..+.++|+++|||+|++..+... . +..+++. .+++|+|+|
T Consensus 98 ~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~--~-------ea~~~~~----~~g~PvVvK 164 (442)
T 3lp8_A 98 GLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYGYFVDT--N-------SAYKFID----KHKLPLVVK 164 (442)
T ss_dssp THHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEEEESSH--H-------HHHHHHH----HSCSSEEEE
T ss_pred HHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEEEECCH--H-------HHHHHHH----HcCCcEEEe
Confidence 34566777776665 99999999999999999999999999999888542 0 1112222 245899999
Q ss_pred ecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE--CCceeE-EEee
Q 004147 151 PVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV--GPEYAH-AEAR 226 (771)
Q Consensus 151 pv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytV--G~~~vh-Ae~R 226 (771)
|..|. ..++++-.... -....++.+-+. ..|. ..+..+|+||||+ |+++-|.++ |..++. +..|
T Consensus 165 p~~~~gg~GV~iv~~~e---el~~a~~~~~~~-~~~g------~~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~~~ 232 (442)
T 3lp8_A 165 ADGLAQGKGTVICHTHE---EAYNAVDAMLVH-HKFG------EAGCAIIIEEFLE--GKEISFFTLVDGSNPVILGVAQ 232 (442)
T ss_dssp ESSCCTTTSEEEESSHH---HHHHHHHHHHTS-CTTG------GGGSSEEEEECCC--SEEEEEEEEEESSCEEEEEEEE
T ss_pred ECCCCCCCeEEEeCCHH---HHHHHHHHHHhh-cccC------CCCCeEEEEEeec--CcEEEEEEEECCCeEEEeEEeE
Confidence 99875 12222211111 011122211100 0010 1235799999999 888888777 434432 3322
Q ss_pred -eCCCCCCeeeecCCCCceeeeee-CCHHHHHH--------HHHHHHHhcCceee---EeEEeeCCCcEEEecCC
Q 004147 227 -KSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQM--------AREVCIAFRQAVCG---FDLLRCEGRSYVCDVNG 288 (771)
Q Consensus 227 -KSP~~DG~vrrN~~gke~r~pv~-Lt~eEk~i--------A~ka~~afgq~VcG---fDLLRs~g~syVcDVNG 288 (771)
..+..||+.--|+-|-+.-.|.. |+++..+- |.++.+++|..+.| +|++.+.+++||+|||-
T Consensus 233 ~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~~g~~viEiN~ 307 (442)
T 3lp8_A 233 DYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKNEPKLLEYNV 307 (442)
T ss_dssp ECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTEEEEEEEES
T ss_pred eeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCCeEEEEEec
Confidence 22334555556666666666776 88866543 45666888885555 99999988899999994
No 42
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.20 E-value=1.2e-10 Score=125.72 Aligned_cols=185 Identities=16% Similarity=0.223 Sum_probs=120.2
Q ss_pred HHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 004147 71 EKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (771)
Q Consensus 71 ~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (771)
..++++++. +..+.++..+..+++||....++|++.|||+|++..+..+.+ ++... -...+++|+|+|
T Consensus 99 ~~~l~~l~~-g~~v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~----------~~~~~-~~~~~g~P~VvK 166 (403)
T 3k5i_A 99 TYALEEVAS-EVKIEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTP----------AELAK-VGEQLGYPLMLK 166 (403)
T ss_dssp HHHHHHHTT-TSEESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEEEESSCCH----------HHHHH-HHHHHCSSEEEE
T ss_pred HHHHHHHHc-CCccCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEEEEcCCCH----------HHHHH-HHHHhCCCEEEE
Confidence 456677777 777999999999999999999999999999999999963211 12211 112356899999
Q ss_pred ecccc--CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEECCceeEEEeeeC
Q 004147 151 PVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS 228 (771)
Q Consensus 151 pv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytVG~~~vhAe~RKS 228 (771)
|..|. -.++++...... ....++ .+ .+..+|+||||+ .|.++.|.++++..- .+--
T Consensus 167 p~~gg~~g~Gv~~v~~~~e---l~~a~~--------------~~-~~~~~lvEe~i~-~~~E~sv~v~~~~~g---~~~~ 224 (403)
T 3k5i_A 167 SKTMAYDGRGNFRVNSQDD---IPEALE--------------AL-KDRPLYAEKWAY-FKMELAVIVVKTKDE---VLSY 224 (403)
T ss_dssp ESSSCCTTTTEEEECSTTS---HHHHHH--------------HT-TTSCEEEEECCC-EEEEEEEEEEECSSC---EEEC
T ss_pred eCCCCcCCCCEEEECCHHH---HHHHHH--------------hc-CCCcEEEecCCC-CCeEEEEEEEEcCCC---EEEe
Confidence 98763 233333222111 111222 11 256799999996 378999999876321 1223
Q ss_pred CCCCCeeeecCCCCceeeeee-CCHHH----HHHHHHHHHHhcCc-eeeEeEEee-CCCcEEEecCCcc
Q 004147 229 PVVDGVVMRNPDGKEVRYPVL-LTPNE----KQMAREVCIAFRQA-VCGFDLLRC-EGRSYVCDVNGWS 290 (771)
Q Consensus 229 P~~DG~vrrN~~gke~r~pv~-Lt~eE----k~iA~ka~~afgq~-VcGfDLLRs-~g~syVcDVNGwS 290 (771)
|+. ..+.++-.-.+.-.|.. |+++. +++|.++++++|.. +++||++.+ +|.+||+|||--.
T Consensus 225 p~~-~~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~dg~~~v~EiNpR~ 292 (403)
T 3k5i_A 225 PTV-ETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLEDDSIMLCEIASRI 292 (403)
T ss_dssp CCE-EEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEETTSCEEEEEEESSC
T ss_pred CCe-eeEEeCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCCCcEEEEEeecCC
Confidence 321 11222111112234566 77754 47899999999985 889999988 4569999999543
No 43
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.20 E-value=7.4e-12 Score=136.10 Aligned_cols=206 Identities=13% Similarity=0.127 Sum_probs=120.7
Q ss_pred cceeeccccCCCC-hHHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccc
Q 004147 57 CDCLIAFYSSGYP-LEKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEED 134 (771)
Q Consensus 57 cd~lIsf~s~Gfp-L~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d 134 (771)
+|+++.... .+ +..+.+.++..+..+ -|+.....+++||..+.++|+++|||+|++..+... ++
T Consensus 89 ~d~V~~~~E--~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~ 154 (452)
T 2qk4_A 89 IEFVVVGPE--APLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKP------------EE 154 (452)
T ss_dssp CCEEEECSS--HHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEEEESSH------------HH
T ss_pred CCEEEECCc--HHHHHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCH------------HH
Confidence 455654322 22 234456666667544 499999999999999999999999999999887542 12
Q ss_pred eeeecCeeccCc-EEEeeccccC-cceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeE
Q 004147 135 FVEVHGNRFWKP-FVEKPVHGDD-HSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVK 212 (771)
Q Consensus 135 ~i~v~g~~~~kP-fVeKpv~Ged-Hni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIK 212 (771)
....- ..+++| +|+||..|.. .++++ -.+.. -....++.+-+. +.|. ..+..+|+||||+ |+++.
T Consensus 155 ~~~~~-~~~g~P~vvvKp~~~~gg~Gv~~--v~~~~-el~~~~~~~~~~-~~~g------~~~~~~lvEe~i~--G~E~s 221 (452)
T 2qk4_A 155 ACSFI-LSADFPALVVKASGLAAGKGVIV--AKSKE-EACKAVQEIMQE-KAFG------AAGETIVIEELLD--GEEVS 221 (452)
T ss_dssp HHHHH-HHCSSCEEEEEESBC---CCEEE--CSSHH-HHHHHHHHHTTC--------------CCEEEEECCC--SEEEE
T ss_pred HHHHH-HhCCCCeEEEEeCCCCCCCCEEE--eCCHH-HHHHHHHHHHhh-hhcc------CCCCeEEEEECCC--CCeEE
Confidence 21111 134689 9999998851 12222 11110 011112211100 0010 0246799999999 89999
Q ss_pred EEEEC-Cc-eeE-EEeee-CCCCCCeeeecCCCCceeeeee-CCHHHH-----HHHHHHHHHhc------CceeeEeEEe
Q 004147 213 VYTVG-PE-YAH-AEARK-SPVVDGVVMRNPDGKEVRYPVL-LTPNEK-----QMAREVCIAFR------QAVCGFDLLR 276 (771)
Q Consensus 213 VytVG-~~-~vh-Ae~RK-SP~~DG~vrrN~~gke~r~pv~-Lt~eEk-----~iA~ka~~afg------q~VcGfDLLR 276 (771)
|.+++ ++ +++ ...|. -...++...-|+.+-+.-.|.. |+++.. ++|.+++++++ ..+++||++.
T Consensus 222 v~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~ 301 (452)
T 2qk4_A 222 CLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIML 301 (452)
T ss_dssp EEEEECSSCEEECCCBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEE
T ss_pred EEEEECCCEEEEcceeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEE
Confidence 98884 33 332 22221 1122333333332333335665 787543 57788888873 3578999999
Q ss_pred eCCCcEEEecCCc
Q 004147 277 CEGRSYVCDVNGW 289 (771)
Q Consensus 277 s~g~syVcDVNGw 289 (771)
+.+++||+|||.-
T Consensus 302 ~~~g~~viEiN~R 314 (452)
T 2qk4_A 302 TKNGPKVLEFNCR 314 (452)
T ss_dssp ETTEEEEEEEESS
T ss_pred eCCCcEEEEEecc
Confidence 8766999999953
No 44
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.19 E-value=1.6e-10 Score=124.29 Aligned_cols=179 Identities=17% Similarity=0.206 Sum_probs=110.0
Q ss_pred cCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc-CcceeEEe
Q 004147 85 VNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DHSIMIYY 163 (771)
Q Consensus 85 iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge-dHni~IYy 163 (771)
=|+.++..+++||..+.++|+++|||+|++..+... +|. ....+++|+|+||..|. -.++++-.
T Consensus 101 g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~------------~~~---~~~~~g~P~vvKp~~g~gs~Gv~~v~ 165 (425)
T 3vot_A 101 GLPFTTMENCRNKNKTRSILQQNGLNTPVFHEFHTL------------ADL---ENRKLSYPLVVKPVNGFSSQGVVRVD 165 (425)
T ss_dssp SCCHHHHHHHHCHHHHHHHHHHTTCCCCCEEEESSG------------GGG---TTCCCCSSEEEEESCC-----CEEEC
T ss_pred CCCHHHHHHhhCHHHHHHHHHHCCCCCCceeccCcH------------HHH---HHhhcCCcEEEEECCCCCCCCceEec
Confidence 368889999999999999999999999999988642 111 12356799999999985 11121111
Q ss_pred ccCCCChHHHHhhhcCCCcccccccccc-cccCcceEEeeccCCCCceeEEEEECCceeE-EEeeeCCCCCCeeeecCCC
Q 004147 164 PSSAGGGMKELFRKVGNRSSEFHPDVRR-VRREGSYIYEEFMPTGGTDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDG 241 (771)
Q Consensus 164 p~~~GgG~~rLfrkign~sS~~~~~~~~-~r~~gsyIyEEFi~t~G~DIKVytVG~~~vh-Ae~RKSP~~DG~vrrN~~g 241 (771)
.... ....++.+...+. ..... ...+..+|.||||+-.--.|-+++.++++.. +..++-.. .|. +...
T Consensus 166 ~~~e---l~~a~~~~~~~~~---~~~~~~~~~~~~~lvEe~i~G~e~sv~~~~~~g~~~~~~~~~~~~~-~~~---~~~~ 235 (425)
T 3vot_A 166 DRKE---LEEAVRKVEAVNQ---RDLNRFVHGKTGIVAEQFIDGPEFAIETLSIQGNVHVLSIGYKGNS-KGP---FFEE 235 (425)
T ss_dssp SHHH---HHHHHHHHHHHTT---SSHHHHHTTCCCEEEEECCCSCEEEEEEEEETTEEEEEEEEEEECC-CCS---BCCC
T ss_pred hHHH---HHHHHHHHHhhhh---hhhhhhccCCCcEEEEEEecCcEEEEEEEEeCCcEEEEeEEEEecc-CCC---cccc
Confidence 1110 1112222110000 00001 1246779999999743334555666666433 33333321 221 2223
Q ss_pred CceeeeeeCCHHH----HHHHHHHHHHhcC--ceeeEeEEeeC-CCcEEEecCC
Q 004147 242 KEVRYPVLLTPNE----KQMAREVCIAFRQ--AVCGFDLLRCE-GRSYVCDVNG 288 (771)
Q Consensus 242 ke~r~pv~Lt~eE----k~iA~ka~~afgq--~VcGfDLLRs~-g~syVcDVNG 288 (771)
.+...|..|+++. .++|.++++++|. .++++|++.+. |.+||+|||.
T Consensus 236 ~~~~~Pa~l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~dG~~~~iEiN~ 289 (425)
T 3vot_A 236 GVYIAPAQLKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDKDGTPYVIEVGA 289 (425)
T ss_dssp CEEEESCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECTTCCEEEEEEES
T ss_pred ceEeecccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEeCCcEEEEEEec
Confidence 4445678888764 4678999999996 49999999875 5599999995
No 45
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.19 E-value=1.8e-10 Score=123.03 Aligned_cols=187 Identities=14% Similarity=0.246 Sum_probs=122.4
Q ss_pred cceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (771)
||++ ++-....+.+ ++++++... .+.++.....+++||....++|+++|||+|++..+... ++..
T Consensus 74 ~dvi-~~~~E~~~~~-~l~~l~~~~-~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~------------~~~~ 138 (377)
T 3orq_A 74 CDVI-TYEFENISAQ-QLKLLCEKY-NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFISVKES------------TDID 138 (377)
T ss_dssp CSEE-EESSTTSCHH-HHHHHHHHS-CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEEEECSS------------THHH
T ss_pred CCcc-eecccccCHH-HHHHHhhhc-CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeEEECCH------------HHHH
Confidence 6764 3333555553 455555554 45699999999999999999999999999999988642 1221
Q ss_pred eecCeeccCcEEEeecccc--CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCC-ceeEE
Q 004147 137 EVHGNRFWKPFVEKPVHGD--DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGG-TDVKV 213 (771)
Q Consensus 137 ~v~g~~~~kPfVeKpv~Ge--dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G-~DIKV 213 (771)
.. ...+++|+|+||..|. .+++++...... ....++. . .++.+|+||||+ | ..+.|
T Consensus 139 ~~-~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~e---l~~a~~~--------------~-~~~~~ivEe~i~--g~~E~sv 197 (377)
T 3orq_A 139 KA-IETLGYPFIVKTRFGGYDGKGQVLINNEKD---LQEGFKL--------------I-ETSECVAEKYLN--IKKEVSL 197 (377)
T ss_dssp HH-HHHTCSSEEEEESSSCCTTTTEEEECSTTS---HHHHHHH--------------H-TTSCEEEEECCC--EEEEEEE
T ss_pred HH-HHHcCCCEEEEeCCCCCCCCCeEEECCHHH---HHHHHHh--------------c-CCCcEEEEccCC--CCEEEEE
Confidence 11 1235689999999873 223222221111 1111111 1 237899999998 5 78999
Q ss_pred EEE-CC--ceeEEEeeeCCCC-----CCeeeecCCCCceeeeeeCCH--HHHHHHHHHHHHhcCc-eeeEeEEee-CCCc
Q 004147 214 YTV-GP--EYAHAEARKSPVV-----DGVVMRNPDGKEVRYPVLLTP--NEKQMAREVCIAFRQA-VCGFDLLRC-EGRS 281 (771)
Q Consensus 214 ytV-G~--~~vhAe~RKSP~~-----DG~vrrN~~gke~r~pv~Lt~--eEk~iA~ka~~afgq~-VcGfDLLRs-~g~s 281 (771)
.++ +. ++.. -|+. +|.+. +.-.|..+++ +-+++|.++++++|.. +++||++.+ +|++
T Consensus 198 ~~~~~~~g~~~~-----~~~~e~~~~~g~~~------~~~~Pa~l~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~g~~ 266 (377)
T 3orq_A 198 TVTRGNNNQITF-----FPLQENEHRNQILF------KTIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSNNQL 266 (377)
T ss_dssp EEEECGGGCEEE-----CCCEEEEEETTEEE------EEEESCSSCCHHHHHHHHHHHHTTSCCCEEEEEEEEEETTCCE
T ss_pred EEEEeCCCCEEE-----ECCEeEEEECCEEE------EEECCCCCCHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCcE
Confidence 998 43 2221 1211 33321 2233445554 6778999999999997 999999998 6779
Q ss_pred EEEecCCcc
Q 004147 282 YVCDVNGWS 290 (771)
Q Consensus 282 yVcDVNGwS 290 (771)
||+|||--.
T Consensus 267 ~v~EinpR~ 275 (377)
T 3orq_A 267 YVNEIAPRP 275 (377)
T ss_dssp EEEEEESSC
T ss_pred EEEEeeCCc
Confidence 999999654
No 46
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.17 E-value=2.8e-10 Score=123.93 Aligned_cols=190 Identities=14% Similarity=0.179 Sum_probs=123.8
Q ss_pred ccceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
.||+++.- ....+ ..++++++.. .++.++..+..+++||....++|+++|||+|++..+... ++.
T Consensus 96 ~~D~V~~~-~e~~~-~~~~~~l~~~-~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~~v~~~------------~e~ 160 (419)
T 4e4t_A 96 LCEAVSTE-FENVP-AASLDFLART-TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESA------------AAL 160 (419)
T ss_dssp HCSEEEEC-CTTCC-HHHHHHHHTT-SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEEEECSH------------HHH
T ss_pred cCCEEEEc-cCcCC-HHHHHHHHcc-CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeEEECCH------------HHH
Confidence 47877732 23344 4566667666 689999999999999999999999999999999988642 122
Q ss_pred eeecCee----ccCcEEEeec-cccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCce
Q 004147 136 VEVHGNR----FWKPFVEKPV-HGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD 210 (771)
Q Consensus 136 i~v~g~~----~~kPfVeKpv-~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~D 210 (771)
.... .. + +|+|+||. .|. .|.|+. + +.|... +..-...+ .++.+|+||||+- +..
T Consensus 161 ~~~~-~~~~~~~-~P~VvKp~~~g~-----------~G~Gv~-~---v~~~~e-l~~a~~~~-~~~~~lvEe~i~~-~~E 220 (419)
T 4e4t_A 161 AALD-DAALDAV-LPGILKTARLGY-----------DGKGQV-R---VSTARE-ARDAHAAL-GGVPCVLEKRLPL-KYE 220 (419)
T ss_dssp HTSC-HHHHHTT-CSEEEEESSSCC-----------TTTTEE-E---ECSHHH-HHHHHHHT-TTCCEEEEECCCE-EEE
T ss_pred HHHH-Hhhcccc-CCEEEEecCCCC-----------CCCceE-E---ECCHHH-HHHHHHhc-CCCcEEEeecCCC-CeE
Confidence 2211 22 5 89999999 665 233432 1 211111 11000011 3577999999986 678
Q ss_pred eEEEEECC---ceeE---EEeeeCCCCCCeeeecCCCCceeeeee-CCH----HHHHHHHHHHHHhcCc-eeeEeEEeeC
Q 004147 211 VKVYTVGP---EYAH---AEARKSPVVDGVVMRNPDGKEVRYPVL-LTP----NEKQMAREVCIAFRQA-VCGFDLLRCE 278 (771)
Q Consensus 211 IKVytVG~---~~vh---Ae~RKSP~~DG~vrrN~~gke~r~pv~-Lt~----eEk~iA~ka~~afgq~-VcGfDLLRs~ 278 (771)
+-|.++++ +++. .+.+.. +|.+. +.-.|.. |++ +-+++|.++++++|.. +++||++.+.
T Consensus 221 isv~v~~~~~G~~~~~~~~e~~~~---~g~~~------~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~ 291 (419)
T 4e4t_A 221 VSALIARGADGRSAAFPLAQNVHH---NGILA------LTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLE 291 (419)
T ss_dssp EEEEEEECTTSCEEECCCEEEEEE---TTEEE------EEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET
T ss_pred EEEEEEEcCCCCEEEEeCeEEEee---CCeEE------EEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeC
Confidence 99988853 2221 111111 22221 1123555 775 4467899999999986 9999999985
Q ss_pred -CCcEEEecCCc
Q 004147 279 -GRSYVCDVNGW 289 (771)
Q Consensus 279 -g~syVcDVNGw 289 (771)
|.+||+|||--
T Consensus 292 dG~~~v~EiNpR 303 (419)
T 4e4t_A 292 DGSFVANEMAPR 303 (419)
T ss_dssp TCCEEEEEEESS
T ss_pred CCCEEEEEEeCC
Confidence 45999999954
No 47
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.17 E-value=3e-11 Score=130.83 Aligned_cols=196 Identities=17% Similarity=0.259 Sum_probs=124.9
Q ss_pred cceeeccccCCC-Ch-HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 004147 57 CDCLIAFYSSGY-PL-EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (771)
Q Consensus 57 cd~lIsf~s~Gf-pL-~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e 131 (771)
+|++++.+ || +- ..+.+.++..+. ++-|+.+...+++||..+.++|+++|||+|++. .+.. +
T Consensus 75 ~d~v~~~~--g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~--~--------- 141 (449)
T 2w70_A 75 AVAIHPGY--GFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGD--D--------- 141 (449)
T ss_dssp CCEEECCS--STTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCS--C---------
T ss_pred CCEEEECC--CCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccccCC--H---------
Confidence 67777654 22 21 134556666664 566899999999999999999999999999986 4432 1
Q ss_pred ccce-eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-------cCcceEEeec
Q 004147 132 EEDF-VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEF 203 (771)
Q Consensus 132 ~~d~-i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-------~~gsyIyEEF 203 (771)
++. ...- ..+++|+|+||..|. .|.|+. + +.|.. ++..-..... .++.+|+|||
T Consensus 142 -~~~~~~~~-~~~g~PvvvKp~~g~-----------gg~Gv~-~---v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~ 203 (449)
T 2w70_A 142 -MDKNRAIA-KRIGYPVIIKASGGG-----------GGRGMR-V---VRGDA-ELAQSISMTRAEAKAAFSNDMVYMEKY 203 (449)
T ss_dssp -HHHHHHHH-HHHCSSEEEEETTCC-----------TTTTCE-E---ECSHH-HHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred -HHHHHHHH-HHhCCcEEEEECCCC-----------CCCCEE-E---eCCHH-HHHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 122 1111 125689999999986 333442 1 22221 1110000110 2568999999
Q ss_pred cCCCCceeEEEEEC---CceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCHH----HHHHHHHHHHHhcCc-eeeEeE
Q 004147 204 MPTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPN----EKQMAREVCIAFRQA-VCGFDL 274 (771)
Q Consensus 204 i~t~G~DIKVytVG---~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~-Lt~e----Ek~iA~ka~~afgq~-VcGfDL 274 (771)
|+- ++++.|.+++ +++++...|..+ +.++...-....|.. |+++ -.++|.++++++|.. +++||+
T Consensus 204 i~g-~~e~~v~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~ 277 (449)
T 2w70_A 204 LEN-PRHVEIQVLADGQGNAIYLAERDCS-----MQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEF 277 (449)
T ss_dssp CSS-CEEEEEEEEECTTSCEEEEEEEEEE-----EEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred cCC-CeEEEEEEEEcCCCCEEEEeceecc-----cccCCcceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 974 4788888876 456776666432 111110001113443 6653 467899999999975 789999
Q ss_pred EeeCCCcEEEecCCc
Q 004147 275 LRCEGRSYVCDVNGW 289 (771)
Q Consensus 275 LRs~g~syVcDVNGw 289 (771)
+.+.|++||+|||.-
T Consensus 278 ~~~~~~~~viEiN~R 292 (449)
T 2w70_A 278 LFENGEFYFIEMNTR 292 (449)
T ss_dssp EEETTEEEEEEEECS
T ss_pred EEECCCEEEEEEECC
Confidence 999888999999964
No 48
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.16 E-value=3.8e-10 Score=121.16 Aligned_cols=189 Identities=12% Similarity=0.119 Sum_probs=126.6
Q ss_pred ccceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
.||+++.-|. .+|. .++++++..+ ++.++..+..+++||...-++|+++|||+|++..+... ++.
T Consensus 42 ~~d~it~e~e-~v~~-~~l~~l~~~~-~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~~v~~~------------~e~ 106 (355)
T 3eth_A 42 QQSVITAEIE-RWPE-TALTRQLARH-PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAER------------SEW 106 (355)
T ss_dssp TTSEEEESCS-CCCC-CHHHHHHHTC-TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEEEECCG------------GGH
T ss_pred cCCEEEECcC-CcCH-HHHHHHHhcC-CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEEEECCH------------HHH
Confidence 6887766553 4554 4677777776 89999999999999999999999999999999988642 122
Q ss_pred eeecCeeccCcEEEeeccc-cCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEE
Q 004147 136 VEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVY 214 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVy 214 (771)
... ...+++|+|+||..+ . .|.|+. +.+. .+.+ ++.. .. .+ .+|.||||+- |..|-|.
T Consensus 107 ~~~-~~~~G~P~VvKp~~~G~-----------~GkGv~-~v~~-~~~~-el~~---a~-~~-~vivEe~I~~-~~Eisv~ 165 (355)
T 3eth_A 107 PAV-FDRLGELAIVKRRTGGY-----------DGRGQW-RLRA-NETE-QLPA---EC-YG-ECIVEQGINF-SGEVSLV 165 (355)
T ss_dssp HHH-HHHHCSEEEEEESSSCC-----------TTTTEE-EEET-TCGG-GSCG---GG-TT-TEEEEECCCC-SEEEEEE
T ss_pred HHH-HHHcCCCEEEEecCCCC-----------CCCeEE-EEcC-CCHH-HHHH---Hh-hC-CEEEEEccCC-CcEEEEE
Confidence 221 124668999999985 6 344543 2221 0011 1111 11 11 6999999984 6788888
Q ss_pred EECC---ceeE---EEeeeCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhcCc-eeeEeEEeeCCCcEE
Q 004147 215 TVGP---EYAH---AEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFRQA-VCGFDLLRCEGRSYV 283 (771)
Q Consensus 215 tVG~---~~vh---Ae~RKSP~~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~~afgq~-VcGfDLLRs~g~syV 283 (771)
++++ ++++ .+.... +|.+. +.-.|..|+++ -+++|.++++++|.. +++||++.+.+++||
T Consensus 166 v~~~~~G~~~~~p~~e~~~~---~g~~~------~~~~pa~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~~~~~~v 236 (355)
T 3eth_A 166 GARGFDGSTVFYPLTHNLHQ---DGILR------TSVAFPQANAQQQARAEEMLSAIMQELGYVGVMAMECFVTPQGLLI 236 (355)
T ss_dssp EEECTTSCEEECCCEEEEEE---TTEEE------EEEECSSCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTEEEE
T ss_pred EEEcCCCCEEEECCEEEEee---CCeEE------EEECCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEECCcEEE
Confidence 8843 2221 111111 23321 12235567765 367889999999874 999999999889999
Q ss_pred EecCCc
Q 004147 284 CDVNGW 289 (771)
Q Consensus 284 cDVNGw 289 (771)
+|||--
T Consensus 237 ~EinpR 242 (355)
T 3eth_A 237 NELAPR 242 (355)
T ss_dssp EEEESS
T ss_pred EEeeCC
Confidence 999964
No 49
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.16 E-value=3.2e-11 Score=131.53 Aligned_cols=193 Identities=15% Similarity=0.112 Sum_probs=122.6
Q ss_pred HHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEe
Q 004147 72 KAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEK 150 (771)
Q Consensus 72 kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeK 150 (771)
.+.+.++..+..++ ++..+..+.+||..+.++|+++|||+|++..+... . +..++++ .++.|+|+|
T Consensus 82 ~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~~~~~~--~-------ea~~~~~----~~g~PvVvK 148 (431)
T 3mjf_A 82 GVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQNFTDV--E-------AALAYVR----QKGAPIVIK 148 (431)
T ss_dssp THHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEEEESCH--H-------HHHHHHH----HHCSSEEEE
T ss_pred HHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEeeCCH--H-------HHHHHHH----HcCCeEEEE
Confidence 34666777776555 99999999999999999999999999999888542 0 1112222 256899999
Q ss_pred ecccc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCceeEEEEE--CCceeEE-Ee-
Q 004147 151 PVHGD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTV--GPEYAHA-EA- 225 (771)
Q Consensus 151 pv~Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~DIKVytV--G~~~vhA-e~- 225 (771)
|..|. ..++++-..... ....++.+-.. ..|. ..+..+|+||||+ |+++.|.++ |..++.. +.
T Consensus 149 p~~~~gg~GV~iv~~~~e---l~~a~~~~~~~-~~~g------~~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~~~ 216 (431)
T 3mjf_A 149 ADGLAAGKGVIVAMTQEE---AETAVNDMLAG-NAFG------DAGHRIVVEEFLD--GEEASFIVMVDGENVLPMATSQ 216 (431)
T ss_dssp ESSSCTTCSEEEECSHHH---HHHHHHHHHTT-HHHH------CCCCCEEEEECCC--SEEEEEEEEEESSCEEECCCBE
T ss_pred ECCCCCCCcEEEeCCHHH---HHHHHHHHHhh-cccc------CCCCeEEEEEeeC--CcEEEEEEEEcCCEEEEEEeeE
Confidence 99875 122222111100 11111111000 0000 1245799999999 889888877 4344331 11
Q ss_pred eeCCCCCCeeeecCCCCceeeeee-CCHHHHHHHH--------HHHHHhcCceee---EeEEeeCCC-cEEEecCCc
Q 004147 226 RKSPVVDGVVMRNPDGKEVRYPVL-LTPNEKQMAR--------EVCIAFRQAVCG---FDLLRCEGR-SYVCDVNGW 289 (771)
Q Consensus 226 RKSP~~DG~vrrN~~gke~r~pv~-Lt~eEk~iA~--------ka~~afgq~VcG---fDLLRs~g~-syVcDVNGw 289 (771)
+..+..||+..-|+-|-+.-.|.. |+++..+-+. ++.+++|..+.| +|++.+.++ +||+|+|--
T Consensus 217 ~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~~g~~~viEiN~R 293 (431)
T 3mjf_A 217 DHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADGQPKVIEFNCR 293 (431)
T ss_dssp ECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECTTSCEEEEEECGG
T ss_pred eceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeCCCCeEEEEEecC
Confidence 222334666666776666677887 8987765544 445777876555 999999666 999999943
No 50
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.11 E-value=8.6e-11 Score=127.31 Aligned_cols=195 Identities=18% Similarity=0.305 Sum_probs=122.9
Q ss_pred cceeeccccCCC-C-hHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 004147 57 CDCLIAFYSSGY-P-LEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (771)
Q Consensus 57 cd~lIsf~s~Gf-p-L~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e 131 (771)
+|++++.+ || + -..+.+.++..+. ++-|+..+..+++||..+.++|+++|||+|++. .+...
T Consensus 74 ~d~v~~~~--g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----------- 140 (451)
T 1ulz_A 74 ADAIHPGY--GFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSL----------- 140 (451)
T ss_dssp CCEEECCS--STTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCCH-----------
T ss_pred CCEEEECC--CccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCH-----------
Confidence 56766654 22 1 1133556666775 456899999999999999999999999999986 44321
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-------cCcceEEeecc
Q 004147 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFM 204 (771)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-------~~gsyIyEEFi 204 (771)
++....- ..+++|+|+||..|. .|.|+. + +.|... +..-..... .++.+|+||||
T Consensus 141 -~~~~~~~-~~~g~PvvvKp~~g~-----------gg~Gv~-~---v~~~~e-l~~~~~~~~~~~~~~~~~~~~lvEe~i 202 (451)
T 1ulz_A 141 -EEAKALA-REIGYPVLLKATAGG-----------GGRGIR-I---CRNEEE-LVKNYEQASREAEKAFGRGDLLLEKFI 202 (451)
T ss_dssp -HHHHHHH-HHHCSSEEEEECSSS-----------SCCSCE-E---ESSHHH-HHHHHHHHHHHHHHTTSCCCEEEEECC
T ss_pred -HHHHHHH-HHcCCCEEEEECCCC-----------CCccEE-E---eCCHHH-HHHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 1222211 135689999999986 344442 1 222111 110000110 25689999999
Q ss_pred CCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCC-ceeeeee-CCHH----HHHHHHHHHHHhcCc-eeeEeE
Q 004147 205 PTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGK-EVRYPVL-LTPN----EKQMAREVCIAFRQA-VCGFDL 274 (771)
Q Consensus 205 ~t~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gk-e~r~pv~-Lt~e----Ek~iA~ka~~afgq~-VcGfDL 274 (771)
+- ++++.|.+++. ++++...|..+ +.++ +.+ ....|.. |+++ -+++|.++++++|.. +++||+
T Consensus 203 ~g-~~e~~v~v~~~~~G~~~~~~~~~~~-----~~~~-~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~ 275 (451)
T 1ulz_A 203 EN-PKHIEYQVLGDKHGNVIHLGERDCS-----IQRR-NQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEF 275 (451)
T ss_dssp CS-CEEEEEEEEECTTSCEEEEEEEEEE-----EEET-TEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cC-CeEEEEEEEEcCCCCEEEEeeeecc-----cccc-cccceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEE
Confidence 74 47888888863 56666655432 2222 111 1112443 6653 467899999999976 788999
Q ss_pred Eee-CCCcEEEecCCc
Q 004147 275 LRC-EGRSYVCDVNGW 289 (771)
Q Consensus 275 LRs-~g~syVcDVNGw 289 (771)
+.+ +|++||+|||.-
T Consensus 276 ~~~~~g~~~viEiN~R 291 (451)
T 1ulz_A 276 IADQEGNLYFIEMNTR 291 (451)
T ss_dssp EECTTCCEEEEEEECS
T ss_pred EEeCCCCEEEEEeeCC
Confidence 998 456999999964
No 51
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.11 E-value=1.2e-10 Score=126.38 Aligned_cols=195 Identities=18% Similarity=0.293 Sum_probs=123.9
Q ss_pred cceeeccccCCCCh--HHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 004147 57 CDCLIAFYSSGYPL--EKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (771)
Q Consensus 57 cd~lIsf~s~GfpL--~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e 131 (771)
||++++-| ||-. ....+.++..+..+ -|+.++..+++||..+.++|+++|||+|++. .+...
T Consensus 79 ~d~i~p~~--g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~----------- 145 (446)
T 3ouz_A 79 ADAIFPGY--GFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA----------- 145 (446)
T ss_dssp CSEEECCS--STTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCSH-----------
T ss_pred cCEEEECC--cccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcccCCCCH-----------
Confidence 66776654 3322 34556666777544 4999999999999999999999999999986 34221
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-------cCcceEEeecc
Q 004147 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFM 204 (771)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-------~~gsyIyEEFi 204 (771)
++.... -..+++|+|+||..|. .|.|+. + +.|... +..-....+ .++.+|+||||
T Consensus 146 -~e~~~~-~~~~g~PvvvKp~~g~-----------gg~Gv~-~---v~~~~e-l~~~~~~~~~~~~~~~~~~~~lvEe~i 207 (446)
T 3ouz_A 146 -EAAKKL-AKEIGYPVILKAAAGG-----------GGRGMR-V---VENEKD-LEKAYWSAESEAMTAFGDGTMYMEKYI 207 (446)
T ss_dssp -HHHHHH-HHHHCSSEEEEETTCC-----------TTCSEE-E---ECSGGG-HHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred -HHHHHH-HHHhCCCEEEEECCCC-----------CCCCEE-E---ECCHHH-HHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 122221 1235689999999986 344443 2 222221 110000111 26789999999
Q ss_pred CCCCceeEEEEECC---ceeEEEeeeCCCCCCeeee-cCCCCceeeee-eCCHH----HHHHHHHHHHHhcC-ceeeEeE
Q 004147 205 PTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMR-NPDGKEVRYPV-LLTPN----EKQMAREVCIAFRQ-AVCGFDL 274 (771)
Q Consensus 205 ~t~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrr-N~~gke~r~pv-~Lt~e----Ek~iA~ka~~afgq-~VcGfDL 274 (771)
+- .+++.|.++++ .+++.-.|... +.+ +....+ ..|. .|+++ -.++|.++++++|. .+++||+
T Consensus 208 ~g-~~e~~v~v~~d~~g~~~~~~~~~~~-----~~~~~~~~~~-~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~ 280 (446)
T 3ouz_A 208 QN-PRHIEVQVIGDSFGNVIHVGERDCS-----MQRRHQKLIE-ESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEF 280 (446)
T ss_dssp SS-CEEEEEEEEECTTSCEEEEEEEEEE-----EEETTEEEEE-EESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CC-CcEEEEEEEEcCCCCEEEEeeceee-----eeecCceEEE-ECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEE
Confidence 85 37888888864 45665555321 222 111111 1243 46654 44689999999997 5678999
Q ss_pred EeeC-CCcEEEecCCc
Q 004147 275 LRCE-GRSYVCDVNGW 289 (771)
Q Consensus 275 LRs~-g~syVcDVNGw 289 (771)
+.+. |++||+|||--
T Consensus 281 ~~~~~g~~~~iEiNpR 296 (446)
T 3ouz_A 281 LVDKNLDFYFIEMNTR 296 (446)
T ss_dssp EECTTCCEEEEEEESS
T ss_pred EEeCCCCEEEEEeECC
Confidence 9986 58999999964
No 52
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.10 E-value=9.7e-11 Score=126.94 Aligned_cols=198 Identities=15% Similarity=0.210 Sum_probs=122.9
Q ss_pred ccceeeccccCCCC-hHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 004147 56 ICDCLIAFYSSGYP-LEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (771)
Q Consensus 56 ~cd~lIsf~s~Gfp-L~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e 131 (771)
.||++++.|.. ++ ...+.+.++..+. ++-++..+..+++||..+.++|+++|||+|++. .+...
T Consensus 73 ~~d~v~~~~g~-~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~----------- 140 (451)
T 2vpq_A 73 GCDGVHPGYGF-LAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDV----------- 140 (451)
T ss_dssp TCSEEECCSST-TTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSCH-----------
T ss_pred CCCEEEECCCc-cccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccCcCCH-----------
Confidence 46777776521 11 1234566666775 456789999999999999999999999999865 44321
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-------cCcceEEeecc
Q 004147 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFM 204 (771)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-------~~gsyIyEEFi 204 (771)
++.... -..+++|+|+||..|. .|.|+. + +.|.+ ++..-..... .++.+|+||||
T Consensus 141 -~~~~~~-~~~~g~PvvvKp~~g~-----------gg~Gv~-~---v~~~~-el~~~~~~~~~~~~~~~~~~~~lvEe~i 202 (451)
T 2vpq_A 141 -SEAKKI-AKKIGYPVIIKATAGG-----------GGKGIR-V---ARDEK-ELETGFRMTEQEAQTAFGNGGLYMEKFI 202 (451)
T ss_dssp -HHHHHH-HHHHCSSEEEEETTCC-----------TTCSEE-E---ESSHH-HHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred -HHHHHH-HHhcCCcEEEEECCCC-----------CCCCEE-E---eCCHH-HHHHHHHHHHHHHHhhcCCCcEEEEEec
Confidence 122221 1135689999999986 333442 1 22211 1110000110 25789999999
Q ss_pred CCCCceeEEEEEC---CceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCHH----HHHHHHHHHHHhcCc-eeeEeEE
Q 004147 205 PTGGTDVKVYTVG---PEYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPN----EKQMAREVCIAFRQA-VCGFDLL 275 (771)
Q Consensus 205 ~t~G~DIKVytVG---~~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~-Lt~e----Ek~iA~ka~~afgq~-VcGfDLL 275 (771)
+- ++++.|.+++ +++++...|..+ +.++...-....|.. |+++ -+++|.++++++|.. +++||++
T Consensus 203 ~g-~~e~~v~v~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~ 276 (451)
T 2vpq_A 203 EN-FRHIEIQIVGDSYGNVIHLGERDCT-----IQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFI 276 (451)
T ss_dssp CS-EEEEEEEEEECTTSCEEEEEEEEEE-----EEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CC-CeEEEEEEEEcCCCCEEEEeccccc-----hhccccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Confidence 74 3788887775 346665555332 222211111123554 7764 467899999999976 6779999
Q ss_pred ee-C-CCcEEEecCCc
Q 004147 276 RC-E-GRSYVCDVNGW 289 (771)
Q Consensus 276 Rs-~-g~syVcDVNGw 289 (771)
.+ . |++||+|||.-
T Consensus 277 ~~~~~g~~~viEiN~R 292 (451)
T 2vpq_A 277 YDLNDNKFYFMEMNTR 292 (451)
T ss_dssp EETTTTEEEEEEEECS
T ss_pred EECCCCCEEEEEeeCC
Confidence 98 4 55999999964
No 53
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.09 E-value=1.5e-10 Score=118.86 Aligned_cols=175 Identities=15% Similarity=0.123 Sum_probs=102.0
Q ss_pred HHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecc
Q 004147 74 ESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVH 153 (771)
Q Consensus 74 i~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~ 153 (771)
++.++..+..++|+..+..+++||....++|+++|||+|++ +. + + ++ +.+|+|+||..
T Consensus 78 ~~~le~~g~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~-~-~----------~~--------l~~P~vvKP~~ 135 (334)
T 2r85_A 78 IELVENMKVPYFGNKRVLRWESDRNLERKWLKKAGIRVPEV--YE-D-P----------DD--------IEKPVIVKPHG 135 (334)
T ss_dssp HHHHHTCCSCBBSCTTHHHHHHSHHHHHHHHHHTTCCCCCB--CS-C-G----------GG--------CCSCEEEEECC
T ss_pred HHHHHHcCCCccCCHHHHHHHHhHHHHHHHHHHcCCCCCCc--cC-C-h----------HH--------cCCCEEEEeCC
Confidence 34446677667899999999999999999999999999999 32 2 1 11 23799999999
Q ss_pred cc-CcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCC-CCce----------eEEEEECCcee
Q 004147 154 GD-DHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTD----------VKVYTVGPEYA 221 (771)
Q Consensus 154 Ge-dHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t-~G~D----------IKVytVG~~~v 221 (771)
|. -.+|++.. +.. -....++.+-+.. .+.....+|+||||+- .-+. +.++++++++.
T Consensus 136 g~~s~Gv~~v~--~~~-el~~~~~~~~~~~--------~~~~~~~~lvee~i~G~e~~~~~~~~~~~~~v~~~~~~g~~~ 204 (334)
T 2r85_A 136 AKGGKGYFLAK--DPE-DFWRKAEKFLGIK--------RKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYE 204 (334)
T ss_dssp ----TTCEEES--SHH-HHHHHHHHHHCCC--------SGGGCCSEEEEECCCCEEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred CCCCCCEEEEC--CHH-HHHHHHHHHHhhc--------ccCCCCcEEEEeccCCceeEEEEeecCcCceeeeeeeccEEE
Confidence 86 12222211 110 0111111110000 0012367999999985 2111 33333333322
Q ss_pred EEEeeeCCCCCCeee--------ecCCCCceee---eeeCC----HHHHHHHHHHHHHhc------CceeeEeEEee-CC
Q 004147 222 HAEARKSPVVDGVVM--------RNPDGKEVRY---PVLLT----PNEKQMAREVCIAFR------QAVCGFDLLRC-EG 279 (771)
Q Consensus 222 hAe~RKSP~~DG~vr--------rN~~gke~r~---pv~Lt----~eEk~iA~ka~~afg------q~VcGfDLLRs-~g 279 (771)
.. .+|.++ .|......-. |..|+ ++-+++|.++++++| ..+++||++.+ +|
T Consensus 205 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~~g 277 (334)
T 2r85_A 205 SN-------VDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDL 277 (334)
T ss_dssp EE-------GGGGGGSCHHHHTTSCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECTTS
T ss_pred ec-------cCcccccccccccccccCCceeeeCCCCcccCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECCCC
Confidence 10 011111 0100001111 66666 677889999999996 66899999988 56
Q ss_pred CcEEEecCC
Q 004147 280 RSYVCDVNG 288 (771)
Q Consensus 280 ~syVcDVNG 288 (771)
++||+|||.
T Consensus 278 ~~~viEiN~ 286 (334)
T 2r85_A 278 EFVVFEISA 286 (334)
T ss_dssp CEEEEEEEC
T ss_pred CEEEEEEeC
Confidence 799999994
No 54
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.04 E-value=2e-10 Score=124.94 Aligned_cols=197 Identities=20% Similarity=0.236 Sum_probs=124.7
Q ss_pred cceeeccccCCCCh--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 004147 57 CDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (771)
Q Consensus 57 cd~lIsf~s~GfpL--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e 131 (771)
+|++++-+ ||-. ....+.++..+. ++-|+..+..+++||..+.++|+++|||+|++. .+...
T Consensus 80 id~v~~~~--g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~----------- 146 (461)
T 2dzd_A 80 VDAIHPGY--GFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGL----------- 146 (461)
T ss_dssp CCEEECCS--SSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCSSCCSSH-----------
T ss_pred CCEEEECC--CccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCcCCH-----------
Confidence 67777654 3321 123455666664 567999999999999999999999999999986 34221
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-------cCcceEEeecc
Q 004147 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFM 204 (771)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-------~~gsyIyEEFi 204 (771)
++....- ..+++|+|+||..|. .|.|+. + +.|... +..-..... .++.+|+||||
T Consensus 147 -~~~~~~~-~~~g~PvvvKp~~g~-----------gg~Gv~-~---v~~~~e-l~~~~~~~~~~~~~~~~~~~~lvEe~i 208 (461)
T 2dzd_A 147 -EDVVAFA-EAHGYPIIIKAALGG-----------GGRGMR-I---VRSKSE-VKEAFERAKSEAKAAFGSDEVYVEKLI 208 (461)
T ss_dssp -HHHHHHH-HHHCSCEEEEESTTC-----------SSSSEE-E---ECCGGG-HHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred -HHHHHHH-HhcCCcEEEEeCCCC-----------CCCCEE-E---eCCHHH-HHHHHHHHHHHHHhhcCCCcEEEEECC
Confidence 1222211 135689999999986 344442 2 222211 110000110 24679999999
Q ss_pred CCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCH----HHHHHHHHHHHHhcCcee-eEeEE
Q 004147 205 PTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTP----NEKQMAREVCIAFRQAVC-GFDLL 275 (771)
Q Consensus 205 ~t~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv-~Lt~----eEk~iA~ka~~afgq~Vc-GfDLL 275 (771)
+- ++++.|-+++. .+++...|..+. .+++..-.+. .|. .|++ +-.++|.++++++|..-+ ++|++
T Consensus 209 ~g-~~e~~v~v~~~~~G~~~~~~~~~~~~----~~~~~~~~~~-~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~ 282 (461)
T 2dzd_A 209 EN-PKHIEVQILGDYEGNIVHLYERDCSV----QRRHQKVVEV-APSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFL 282 (461)
T ss_dssp CS-CEEEEEEEEECTTCCEEEEEEEEEEE----EETTEEEEEE-ESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CC-CeEEEEEEEEcCCCCEEEEEeccccc----cccccceEEE-CCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEE
Confidence 74 47888887763 467766664321 2222111111 233 4665 356799999999999764 49999
Q ss_pred eeCCCcEEEecCCcc
Q 004147 276 RCEGRSYVCDVNGWS 290 (771)
Q Consensus 276 Rs~g~syVcDVNGwS 290 (771)
.+.|++||+|||--.
T Consensus 283 ~~~~~~~viEiN~R~ 297 (461)
T 2dzd_A 283 VSGDEFYFIEVNPRI 297 (461)
T ss_dssp EETTEEEEEEEESSC
T ss_pred EeCCCEEEEEEECCC
Confidence 998889999999743
No 55
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.99 E-value=1.5e-09 Score=125.60 Aligned_cols=197 Identities=14% Similarity=0.169 Sum_probs=99.5
Q ss_pred cceeeccccCCCC--hHHHHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 004147 57 CDCLIAFYSSGYP--LEKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (771)
Q Consensus 57 cd~lIsf~s~Gfp--L~kai~y~~lr~p~~i-Ndl~~q~~l~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e 131 (771)
||++++-| ||- -....+.++..+..++ ++.++..++.||..+.++|+++|||+|++. .+.. +
T Consensus 75 ~daI~pg~--gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~~~~~s--~--------- 141 (681)
T 3n6r_A 75 AQAVHPGY--GFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIED--A--------- 141 (681)
T ss_dssp CSCCBCCS--SSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC-------------------
T ss_pred cCEEEECC--CccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccccCcCC--H---------
Confidence 56666544 221 1244566667775554 999999999999999999999999999975 2321 1
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-------cCcceEEeecc
Q 004147 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFM 204 (771)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-------~~gsyIyEEFi 204 (771)
++.... -..+++|+|+||..|. .|.|++ +.+....-...+. ..+ .++.+++||||
T Consensus 142 -~e~~~~-a~~igyPvVvKp~~gg-----------ggkGv~-iv~~~~el~~a~~----~~~~ea~~~fg~~~vlvEe~I 203 (681)
T 3n6r_A 142 -DEAVKI-SNQIGYPVMIKASAGG-----------GGKGMR-IAWNDQEAREGFQ----SSKNEAANSFGDDRIFIEKFV 203 (681)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -HHHHHH-HHhcCCcEEEEECCCC-----------CCCCEE-EECCHHHHHHHHH----HHHHHHHHhCCCCcEEEEecc
Confidence 222221 2346789999999987 444553 4433221111121 111 25689999999
Q ss_pred CCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCHHHH----HHHHHHHHHhcCc-eeeEeEE
Q 004147 205 PTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNEK----QMAREVCIAFRQA-VCGFDLL 275 (771)
Q Consensus 205 ~t~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~-Lt~eEk----~iA~ka~~afgq~-VcGfDLL 275 (771)
+. ++++-|-++++ ++++...|...+ .+++....+. .|.. |+++.. ++|.++++++|.. ++.||++
T Consensus 204 ~g-~rei~V~v~~d~~G~vv~l~~rd~s~----qr~~~k~~e~-~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~ 277 (681)
T 3n6r_A 204 TQ-PRHIEIQVLCDSHGNGIYLGERECSI----QRRNQKVVEE-APSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFI 277 (681)
T ss_dssp CS-CEEEEEEEECCSSSCCEEEEEEECCC----EETTEECEEE-ESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred CC-CcEEEEEEEEeCCCCEEEEeeeecce----eccCccEEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEE
Confidence 85 38899988874 667877776421 3333322232 2444 787655 7899999999985 7779999
Q ss_pred eeC-CCcEEEecCCcc
Q 004147 276 RCE-GRSYVCDVNGWS 290 (771)
Q Consensus 276 Rs~-g~syVcDVNGwS 290 (771)
.+. |.+|++|||--.
T Consensus 278 ~d~dg~~~~lEiNpR~ 293 (681)
T 3n6r_A 278 VDGQKNFYFLEMNTRL 293 (681)
T ss_dssp ECTTSCCCCCEEECSC
T ss_pred EeCCCCEEEEeccccc
Confidence 985 559999999643
No 56
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.95 E-value=2.4e-09 Score=118.76 Aligned_cols=194 Identities=15% Similarity=0.159 Sum_probs=120.2
Q ss_pred cceeeccccCCCChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccccee
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFV 136 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i 136 (771)
+|+++++ +.. .+..+.+.++..+.. -++..+..++.||..+.++|+++|||+|++..+... ++..
T Consensus 103 id~Vip~-sE~-~l~~~a~~~e~~Gi~-g~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~------------ee~~ 167 (474)
T 3vmm_A 103 ADAITTN-NEL-FIAPMAKACERLGLR-GAGVQAAENARDKNKMRDAFNKAGVKSIKNKRVTTL------------EDFR 167 (474)
T ss_dssp CSEEEES-CGG-GHHHHHHHHHHTTCC-CSCHHHHHHTTCHHHHHHHHHHTTSCCCCEEEECSH------------HHHH
T ss_pred CCEEEEC-Ccc-cHHHHHHHHHHcCCC-CCCHHHHHHhhCHHHHHHHHHHcCCCCCCeEEECCH------------HHHH
Confidence 4555552 222 233455566666665 899999999999999999999999999999888542 1222
Q ss_pred eecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc-------------ccccCcceEEeec
Q 004147 137 EVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR-------------RVRREGSYIYEEF 203 (771)
Q Consensus 137 ~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~-------------~~r~~gsyIyEEF 203 (771)
.. -..+++|+|+||..|. .|.|+. .+.|.... ..-.. .+..+..+|.|||
T Consensus 168 ~~-~~~lg~PvVVKP~~g~-----------gg~Gv~----iv~~~eel-~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~ 230 (474)
T 3vmm_A 168 AA-LEEIGTPLILKPTYLA-----------SSIGVT----LITDTETA-EDEFNRVNDYLKSINVPKAVTFEAPFIAEEF 230 (474)
T ss_dssp HH-HHHSCSSEEEEESSCC-----------TTTTCE----EECCTTSH-HHHHHHHHHHHTTSCCCTTCCCSCSEEEEEC
T ss_pred HH-HHHcCCCEEEEECCCC-----------cCceEE----EECCHHHH-HHHHHHHHHHHhhccccccccCCCeEEEEeC
Confidence 21 1235689999999985 333332 12222111 10000 0123578999999
Q ss_pred cCCCC------------ceeEEEEECCceeE-EEeeeCCCCCCeeeecCCCCceeeeeeCCHH----HHHHHHHHHHHhc
Q 004147 204 MPTGG------------TDVKVYTVGPEYAH-AEARKSPVVDGVVMRNPDGKEVRYPVLLTPN----EKQMAREVCIAFR 266 (771)
Q Consensus 204 i~t~G------------~DIKVytVG~~~vh-Ae~RKSP~~DG~vrrN~~gke~r~pv~Lt~e----Ek~iA~ka~~afg 266 (771)
|+-.- -.|.+++.+++... +..++-+. .+ + . .-....|..|+++ -.++|.++++++|
T Consensus 231 I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v~i~~~~~~-~~-~---~-~~~~~~Pa~l~~~~~~~l~~~a~~~~~alG 304 (474)
T 3vmm_A 231 LQGEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDKTPQ-IG-F---T-ETSHITPSILDEEAKKKIVEAAKKANEGLG 304 (474)
T ss_dssp CCBCHHHHCSSSSSCSEEEEEEEEETTEEEEEEEEEECCC-BT-T---B-CCEEEESCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCceeeeeecccccceeEEEEEEECCeEEEEEEEeeccC-CC-c---c-ceEEEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 98421 24666666666422 22222321 11 1 1 1122346667774 5678899999999
Q ss_pred Cceee--EeEEeeC-CCcEEEecCC
Q 004147 267 QAVCG--FDLLRCE-GRSYVCDVNG 288 (771)
Q Consensus 267 q~VcG--fDLLRs~-g~syVcDVNG 288 (771)
..-+| ||++.+. |.+||+|||-
T Consensus 305 ~~g~~~~vef~~~~dg~~~~iEvNp 329 (474)
T 3vmm_A 305 LQNCATHTEIKLMKNREPGLIESAA 329 (474)
T ss_dssp CCSEEEEEEEEEEGGGEEEEEEEES
T ss_pred CCCccEEEEEEEcCCCCEEEEEEeC
Confidence 98777 8999874 5599999993
No 57
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.92 E-value=2.1e-09 Score=129.77 Aligned_cols=196 Identities=16% Similarity=0.143 Sum_probs=126.7
Q ss_pred ccceeeccccCCCChHHHHH-----HHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccc
Q 004147 56 ICDCLIAFYSSGYPLEKAES-----YATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYF 129 (771)
Q Consensus 56 ~cd~lIsf~s~GfpL~kai~-----y~~lr~p~~i-Ndl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~ 129 (771)
.+|++++.+.....+.-+++ .++..+..++ |+.++...+.||....++|+++|||+|++..+...
T Consensus 82 ~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~~v~~~--------- 152 (1073)
T 1a9x_A 82 RPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTM--------- 152 (1073)
T ss_dssp CCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEEEESSH---------
T ss_pred CCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCCEEEECCH---------
Confidence 46887776643223332221 4556675555 99999999999999999999999999999988642
Q ss_pred ccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccc-c--ccCcceEEeeccCC
Q 004147 130 IEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRR-V--RREGSYIYEEFMPT 206 (771)
Q Consensus 130 ~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~-~--r~~gsyIyEEFi~t 206 (771)
++.... -..+++|+|+||..|. .|.|+. + +.|.. ++..-... . ...+.+|+||||+-
T Consensus 153 ---~ea~~~-~~~ig~PvVvKp~~~~-----------Gg~Gv~-i---v~~~e-el~~~~~~~~~~~~~~~vlvEe~I~G 212 (1073)
T 1a9x_A 153 ---EEALAV-AADVGFPCIIRPSFTM-----------GGSGGG-I---AYNRE-EFEEICARGLDLSPTKELLIDESLIG 212 (1073)
T ss_dssp ---HHHHHH-HHHHCSSEEEEETTCC-----------TTTTCE-E---ESSHH-HHHHHHHHHHHHCTTSCEEEEECCTT
T ss_pred ---HHHHHH-HHHcCCCEEEEECCCC-----------CCCceE-E---eCCHH-HHHHHHHHHHhhCCCCcEEEEEccCC
Confidence 122221 1235689999999875 233332 1 22211 11100000 1 13568999999983
Q ss_pred CCceeEEEEECCc---ee--EEEeeeCCCCCCeeeecCCCCcee--eee-eCCH----HHHHHHHHHHHHhcCc--eeeE
Q 004147 207 GGTDVKVYTVGPE---YA--HAEARKSPVVDGVVMRNPDGKEVR--YPV-LLTP----NEKQMAREVCIAFRQA--VCGF 272 (771)
Q Consensus 207 ~G~DIKVytVG~~---~v--hAe~RKSP~~DG~vrrN~~gke~r--~pv-~Lt~----eEk~iA~ka~~afgq~--VcGf 272 (771)
.+.+.|-++++. ++ -.+.|..| .| .|.|... .|. .||+ +-+++|.++++++|.. +|+|
T Consensus 213 -~~E~~v~v~~d~~g~~v~~~~~e~~dp--~~-----v~~g~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~v 284 (1073)
T 1a9x_A 213 -WKEYEMEVVRDKNDNCIIVCSIENFDA--MG-----IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNV 284 (1073)
T ss_dssp -SEEEEEEEEECTTCCEEEEEEEEESSC--TT-----SCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred -CeEEEEEEEEeCCCCEEEEEEEecccC--Cc-----cccCcEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccCceEE
Confidence 268888888753 22 23345445 22 2323322 244 4887 4467899999999997 9999
Q ss_pred eEEee--CCCcEEEecCC
Q 004147 273 DLLRC--EGRSYVCDVNG 288 (771)
Q Consensus 273 DLLRs--~g~syVcDVNG 288 (771)
|++.. +|++||+|||-
T Consensus 285 df~~~~~~g~~~viEiNp 302 (1073)
T 1a9x_A 285 QFAVNPKNGRLIVIEMNP 302 (1073)
T ss_dssp EEEECTTTCCEEEEEEES
T ss_pred EEEEECCCCCEEEEEecC
Confidence 99998 47899999993
No 58
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.88 E-value=1.3e-09 Score=126.01 Aligned_cols=199 Identities=16% Similarity=0.189 Sum_probs=122.9
Q ss_pred cceeeccccCCCCh--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCcccccccccc
Q 004147 57 CDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEE 133 (771)
Q Consensus 57 cd~lIsf~s~GfpL--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~ 133 (771)
+|++++-| ||-. ....+.++..+. |+-++.+...+++||..+.++|+++|||+|++....-. ..+
T Consensus 101 ~daI~pg~--gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GVpvpp~~~~~~~----------s~~ 168 (675)
T 3u9t_A 101 AQAIHPGY--GFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQ----------DLE 168 (675)
T ss_dssp CSEEECCS--STTTTCHHHHHHHHTTTCEESSCCHHHHHHHTSHHHHHHHHHHTTCCBCCCCCSCCC----------CTT
T ss_pred cCEEEeCC--cccccCHHHHHHHHHcCCceeCCCHHHHHHhchHHHHHHHHHHcCcCcCCccccCCC----------CHH
Confidence 56666544 3311 244556666764 45589999999999999999999999999997652111 012
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-------cCcceEEeeccCC
Q 004147 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFMPT 206 (771)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-------~~gsyIyEEFi~t 206 (771)
+.... -..+++|+|+||..|. .|.|++ + +.|.... ..-....+ .++.+++||||+.
T Consensus 169 e~~~~-a~~igyPvvvKp~~G~-----------Gg~Gv~-i---v~~~~el-~~a~~~~~~ea~~~fg~~~vlvEeyI~g 231 (675)
T 3u9t_A 169 TFRRE-AGRIGYPVLLKAAAGG-----------GGKGMK-V---VEREAEL-AEALSSAQREAKAAFGDARMLVEKYLLK 231 (675)
T ss_dssp HHHHH-HHHSCSSBCCBCCC-----------------CC-C---BCCTTTH-HHHHSCCCC--------CCCBCCBCCSS
T ss_pred HHHHH-HHhCCCcEEEEECCCC-----------CCccEE-E---ECCHHHH-HHHHHHHHHHHHHhcCCCcEEEEeecCC
Confidence 22221 1235689999999986 333442 2 3333221 11111111 1568999999985
Q ss_pred CCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCHHH----HHHHHHHHHHhcC-ceeeEeEEee
Q 004147 207 GGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPNE----KQMAREVCIAFRQ-AVCGFDLLRC 277 (771)
Q Consensus 207 ~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~-Lt~eE----k~iA~ka~~afgq-~VcGfDLLRs 277 (771)
.+.+-|-++++ ++++...|...+ .+++..-.+. .|.. |+++. .++|.++++++|. .+++||++.+
T Consensus 232 -~reiev~v~~d~~G~vv~l~~rd~s~----qr~~qk~ie~-~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~ 305 (675)
T 3u9t_A 232 -PRHVEIQVFADRHGHCLYLNERDCSI----QRRHQKVVEE-APAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLD 305 (675)
T ss_dssp -CBCEEEEEEECSSSCEEEEEEEECCC----BSSSSBCEEE-ESCSSCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBC
T ss_pred -CcEEEEEEEEcCCCCEEEEeccccce----eeccceEEEE-CCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEc
Confidence 26777777753 678887776542 2232221121 2443 67644 5689999999999 6899999988
Q ss_pred C-CCcEEEecCCcc
Q 004147 278 E-GRSYVCDVNGWS 290 (771)
Q Consensus 278 ~-g~syVcDVNGwS 290 (771)
. |.+|++|||--.
T Consensus 306 ~dG~~~~iEiNpR~ 319 (675)
T 3u9t_A 306 ERGQFFFMEMNTRL 319 (675)
T ss_dssp TTSCBCBCEEESSC
T ss_pred CCCCEEEEeccccc
Confidence 4 459999999654
No 59
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=98.86 E-value=1.7e-09 Score=122.05 Aligned_cols=194 Identities=13% Similarity=0.077 Sum_probs=113.6
Q ss_pred HHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE----eccC--CC-----ccc-c----c-cccccc
Q 004147 73 AESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYALV----NREV--PY-----QEL-D----Y-FIEEED 134 (771)
Q Consensus 73 ai~y~~lr~p~~i-Ndl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~----~r~~--p~-----~~~-~----~-~~e~~d 134 (771)
..+.++..+...+ ++..+..++.||..+.++|+++|||+|++... ...+ +. .-+ . . +...++
T Consensus 140 ~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e 219 (540)
T 3glk_A 140 LPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDE 219 (540)
T ss_dssp HHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHH
T ss_pred HHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccccccccccccccccccccccccccccCcCCHHH
Confidence 3455667776555 99999999999999999999999999997650 0000 00 000 0 0 011122
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccccc---ccCcceEEeeccCCCCcee
Q 004147 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RREGSYIYEEFMPTGGTDV 211 (771)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~---r~~gsyIyEEFi~t~G~DI 211 (771)
.... -..+++|+|+||..|. .|-|+ +.+.|....-. -.... ..++.+++||||+- ++.+
T Consensus 220 a~~~-a~~igyPvVVKp~~gg-----------GG~Gv----~iv~~~~eL~~-a~~~~~~~~~~~~vlVEe~I~g-~rei 281 (540)
T 3glk_A 220 GLEA-AERIGFPLMIKASEGG-----------GGKGI----RKAESAEDFPI-LFRQVQSEIPGSPIFLMKLAQH-ARHL 281 (540)
T ss_dssp HHHH-HHHHCSSEEEEETTCC---------------E----EEECSTTTHHH-HHHHHHHHSTTCCEEEEECCSS-EEEE
T ss_pred HHHH-HHhcCCcEEEEECCCC-----------CCCCE----EEECCHHHHHH-HHHHHHhhccCCCEEEEEecCC-CcEE
Confidence 2221 1246789999999886 23233 22333222111 01111 12678999999953 4889
Q ss_pred EEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCH----HHHHHHHHHHHHhcC-ceeeEeEEee-CCCc
Q 004147 212 KVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTP----NEKQMAREVCIAFRQ-AVCGFDLLRC-EGRS 281 (771)
Q Consensus 212 KVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~-Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs-~g~s 281 (771)
-|-++++ ++++.-.|..- ..+++..--+. .|.. |++ +-.++|.++++++|. .+++||++.+ +|.+
T Consensus 282 ~V~vl~d~~G~vv~l~~rd~s----~qr~~~k~ie~-~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~VEf~~d~dg~~ 356 (540)
T 3glk_A 282 EVQILADQYGNAVSLFGRDCS----IQRRHQKIVEE-APATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSF 356 (540)
T ss_dssp EEEEEECTTSCEEEEEEEEEE----EC---CCSEEE-ESCTTSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCE
T ss_pred EEEEEEcCCCCEEEEeceeee----eeecccceEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcCCCCE
Confidence 9988875 56776666431 12222111111 2443 455 345789999999998 5888999987 5669
Q ss_pred EEEecCCc
Q 004147 282 YVCDVNGW 289 (771)
Q Consensus 282 yVcDVNGw 289 (771)
|++|||--
T Consensus 357 ~~lEiNpR 364 (540)
T 3glk_A 357 HFLELNPR 364 (540)
T ss_dssp EEEEEECS
T ss_pred EEEEEECC
Confidence 99999964
No 60
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.85 E-value=9.5e-09 Score=125.30 Aligned_cols=196 Identities=17% Similarity=0.220 Sum_probs=96.5
Q ss_pred cceeeccccCCCCh--HHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccc
Q 004147 57 CDCLIAFYSSGYPL--EKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIE 131 (771)
Q Consensus 57 cd~lIsf~s~GfpL--~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e 131 (771)
+|++++-| ||.. ....+.++..+. |+-++.++..++.||..+.++|+++|||+|++. .+.. +
T Consensus 94 iD~V~pg~--g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~~~v~s--~--------- 160 (1165)
T 2qf7_A 94 ADAIHPGY--GLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDD--M--------- 160 (1165)
T ss_dssp CSEEECCS--STTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC---------------------
T ss_pred CCEEEECC--CchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeCcCCCC--H---------
Confidence 56666544 3321 134556666774 567999999999999999999999999999987 3432 1
Q ss_pred ccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-------cCcceEEeecc
Q 004147 132 EEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFM 204 (771)
Q Consensus 132 ~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-------~~gsyIyEEFi 204 (771)
++.... -..+++|+|+||..|. .|-|+. +.+....-...+. ..+ .+..+++||||
T Consensus 161 -eea~~~-a~~igyPvVVKp~~g~-----------GG~Gv~-iv~s~eEL~~a~~----~~~~~a~~~fg~~~vlVEefI 222 (1165)
T 2qf7_A 161 -AEVAKM-AAAIGYPVMLKASWGG-----------GGRGMR-VIRSEADLAKEVT----EAKREAMAAFGKDEVYLEKLV 222 (1165)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred -HHHHHH-HHhcCCCEEEEeCCCC-----------CCCCEE-EECCHHHHHHHHH----HHHHHHHhhcCCCcEEEEEec
Confidence 222221 1236689999999986 344543 3332211111111 111 24679999999
Q ss_pred CCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCHHH----HHHHHHHHHHhcCc-eeeEeEE
Q 004147 205 PTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPNE----KQMAREVCIAFRQA-VCGFDLL 275 (771)
Q Consensus 205 ~t~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv-~Lt~eE----k~iA~ka~~afgq~-VcGfDLL 275 (771)
+. |+.+.|.++++ .+++...|.. .+.|+...-....|. .|+++. .++|.++++++|.. +++||++
T Consensus 223 ~g-g~EisV~vl~D~~G~vv~l~~r~~-----s~~r~~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~ 296 (1165)
T 2qf7_A 223 ER-ARHVESQILGDTHGNVVHLFERDC-----SVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYL 296 (1165)
T ss_dssp SS-EEEEEEEEEECTTSCEEEEEEEEE-----EEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred cC-CcEEEEEEEEcCCCcEEEEEeecc-----cceecccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEE
Confidence 74 78899988875 3677656633 233321111112243 477643 57999999999986 6789999
Q ss_pred ee-C-CCcEEEecCCc
Q 004147 276 RC-E-GRSYVCDVNGW 289 (771)
Q Consensus 276 Rs-~-g~syVcDVNGw 289 (771)
.+ . |++||+|||--
T Consensus 297 vd~~dg~~~~iEiNpR 312 (1165)
T 2qf7_A 297 MDADTGKFYFIEVNPR 312 (1165)
T ss_dssp EETTTTEEEEEEEECS
T ss_pred EECCCCCEEEEEEEcC
Confidence 98 5 56999999954
No 61
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=98.85 E-value=2.6e-09 Score=122.02 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=119.7
Q ss_pred HHHHHHhcCCccc-CCchhhhHhhhHHHHHHHHHhCCCCCCCEEE--E--ec-------cCC-Ccccc----c-cccccc
Q 004147 73 AESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRYAL--V--NR-------EVP-YQELD----Y-FIEEED 134 (771)
Q Consensus 73 ai~y~~lr~p~~i-Ndl~~q~~l~DR~~~~qiL~~~gIP~P~t~~--~--~r-------~~p-~~~~~----~-~~e~~d 134 (771)
..+.++..+...+ ++..+..++.||..+.++|+++|||+|++.. + .. +.. ...+. . +...++
T Consensus 156 ~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~ee 235 (587)
T 3jrx_A 156 LPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDE 235 (587)
T ss_dssp HHHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHH
T ss_pred HHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCeecccccccccccccccccccccchhhccccccCCHHH
Confidence 3456667776655 9999999999999999999999999999764 0 00 000 00000 0 111122
Q ss_pred eeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccccc---ccCcceEEeeccCCCCcee
Q 004147 135 FVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RREGSYIYEEFMPTGGTDV 211 (771)
Q Consensus 135 ~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~---r~~gsyIyEEFi~t~G~DI 211 (771)
.... -..+++|+|+||..|. .|-|++ + +.|... +..-.... ..++.+++||||+- ++.+
T Consensus 236 a~~~-a~~iGyPvVVKp~~Gg-----------GGkGv~-i---V~s~eE-L~~a~~~a~~~~~~~~vlVEeyI~g-~rei 297 (587)
T 3jrx_A 236 GLEA-AERIGFPLMIKASEGG-----------GGKGIR-K---AESAED-FPILFRQVQSEIPGSPIFLMKLAQH-ARHL 297 (587)
T ss_dssp HHHH-HHHHCSSEEEEETTCC-----------SSSSEE-E---ECSTTT-HHHHHHHHHHHSTTCCEEEEECCCS-CEEE
T ss_pred HHHH-HHhcCCeEEEEeCCCC-----------CCCCeE-E---eCCHHH-HHHHHHHHHhhccCCCEEEEEecCC-CcEE
Confidence 2221 1346799999999986 333442 2 332222 11101111 13678999999964 4889
Q ss_pred EEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeeee-CCHH----HHHHHHHHHHHhcC-ceeeEeEEee-CCCc
Q 004147 212 KVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPVL-LTPN----EKQMAREVCIAFRQ-AVCGFDLLRC-EGRS 281 (771)
Q Consensus 212 KVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv~-Lt~e----Ek~iA~ka~~afgq-~VcGfDLLRs-~g~s 281 (771)
-|-++++ ++++.-.|..- ..+++..--+. .|.. |+++ -.++|.++++++|. .+++||++.+ +|.+
T Consensus 298 ~V~vl~D~~G~vv~l~~rd~s----iqrr~qk~ie~-aPa~~l~~~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~dG~~ 372 (587)
T 3jrx_A 298 EVQILADQYGNAVSLFGRDCS----IQRRHQKIVEE-APATIAPLAIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSF 372 (587)
T ss_dssp EEEEEECSSSCEEEEEEEEEE----EESSSCEEEEE-ESCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECSSSCE
T ss_pred EEEEEEcCCCCEEEEeeeecc----ccccccceeEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCE
Confidence 9988885 46666566431 12222111111 2443 4553 45789999999998 5888999987 5669
Q ss_pred EEEecCCcc
Q 004147 282 YVCDVNGWS 290 (771)
Q Consensus 282 yVcDVNGwS 290 (771)
|++|||--.
T Consensus 373 yflEINpRl 381 (587)
T 3jrx_A 373 HFLELNPRL 381 (587)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999999643
No 62
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.85 E-value=1.6e-09 Score=121.73 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=120.6
Q ss_pred cceeeccccCCCChH--HHHHHHHhcC---CcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEE-----ecc------
Q 004147 57 CDCLIAFYSSGYPLE--KAESYATLRK---PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALV-----NRE------ 120 (771)
Q Consensus 57 cd~lIsf~s~GfpL~--kai~y~~lr~---p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~-----~r~------ 120 (771)
+|++++.| ||.-+ .....++..+ +++-++..+..+++||..+.++|+++|||+|++..+ ..+
T Consensus 131 id~Vi~g~--G~~sE~~~~~~~l~~~g~~i~~~gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~ 208 (554)
T 1w96_A 131 VDAVWAGW--GHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLV 208 (554)
T ss_dssp CSEEECCS--STTTTCTHHHHHHHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCE
T ss_pred CCEEEECC--CccccCHHHHHHHHHcCCeEEEeCCCHHHHHHHhCHHHHHHHHHHCCCCcCCcccccccccccccccccc
Confidence 67777764 33110 1122344444 577788899999999999999999999999997653 000
Q ss_pred -CCCc-ccc-ccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccccc---cc
Q 004147 121 -VPYQ-ELD-YFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRV---RR 194 (771)
Q Consensus 121 -~p~~-~~~-~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~---r~ 194 (771)
-|.. ... ..-..++.... -..+++|+|+||..|. .|-|+. + +.|.. ++..-.... ..
T Consensus 209 ~ip~~~~~~~~~~~~~e~~~~-~~~~g~PvVvKp~~g~-----------gg~Gv~-~---v~~~~-el~~a~~~~~~~~~ 271 (554)
T 1w96_A 209 SVDDDIYQKGCCTSPEDGLQK-AKRIGFPVMIKASEGG-----------GGKGIR-Q---VEREE-DFIALYHQAANEIP 271 (554)
T ss_dssp ECCHHHHGGGSCSSHHHHHHH-HHHHCSSEEEEETTCC-----------TTTTEE-E---ECSHH-HHHHHHHHHHHHST
T ss_pred ccccccccccCCCCHHHHHHH-HHHcCCCEEEEECCCC-----------CCceEE-E---ECCHH-HHHHHHHHHHhhcc
Confidence 0000 000 00011222221 1235689999999986 333432 1 22221 111000011 13
Q ss_pred CcceEEeeccCCCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCce-eeeee-CCH----HHHHHHHHHHHHh
Q 004147 195 EGSYIYEEFMPTGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEV-RYPVL-LTP----NEKQMAREVCIAF 265 (771)
Q Consensus 195 ~gsyIyEEFi~t~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~-r~pv~-Lt~----eEk~iA~ka~~af 265 (771)
++.+|+||||+. |+.+-|.++++ ++++...|... +.+. +.+-+ -.|.. +++ +-.++|.++++++
T Consensus 272 ~~~vlvEe~i~g-~~e~sv~vl~d~~G~vv~l~~~~~~-----~~~~-~~k~~~~~P~~~l~~~~~~~i~~~a~~~~~al 344 (554)
T 1w96_A 272 GSPIFIMKLAGR-ARHLEVQLLADQYGTNISLFGRDCS-----VQRR-HQKIIEEAPVTIAKAETFHEMEKAAVRLGKLV 344 (554)
T ss_dssp TCCEEEEECCCS-CEEEEEEEEECTTSCEEEEEEEEEE-----EEET-TEEEEEEESCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeeeeee-----eEee-ccceeeeCCCcCCCHHHHHHHHHHHHHHHHHc
Confidence 578999999984 57888888764 45554444322 1111 11110 12333 554 4577899999999
Q ss_pred cC-ceeeEeEEee--CCCcEEEecCC
Q 004147 266 RQ-AVCGFDLLRC--EGRSYVCDVNG 288 (771)
Q Consensus 266 gq-~VcGfDLLRs--~g~syVcDVNG 288 (771)
|. .+++||++.+ +|++||+|||-
T Consensus 345 g~~G~~~ve~~~~~~dg~~~~iEiN~ 370 (554)
T 1w96_A 345 GYVSAGTVEYLYSHDDGKFYFLELNP 370 (554)
T ss_dssp TCCEEEEEEEEECTTTCCEEEEEEEC
T ss_pred CCcceEEEEEEEECCCCCEEEEEeeC
Confidence 98 7999999996 46799999996
No 63
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.85 E-value=6.7e-09 Score=125.48 Aligned_cols=196 Identities=15% Similarity=0.169 Sum_probs=114.4
Q ss_pred cceeeccccCCCChHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccce
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDF 135 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~ 135 (771)
+|..|..+..-.|+ ...+.++..+. ++-|+..+..++.||....++|++.|||+|++..+... ++.
T Consensus 635 ~d~Vi~~~g~~~~~-~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~~~~s~------------eea 701 (1073)
T 1a9x_A 635 PKGVIVQYGGQTPL-KLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAI------------EMA 701 (1073)
T ss_dssp CSEEECSSSTHHHH-TTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEEECCSH------------HHH
T ss_pred cceEEeecCCchHH-HHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCceEECCH------------HHH
Confidence 45555543211222 23445556674 44599999999999999999999999999999988542 222
Q ss_pred eeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCccccccccc---ccccCcceEEeeccCCC-Ccee
Q 004147 136 VEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVR---RVRREGSYIYEEFMPTG-GTDV 211 (771)
Q Consensus 136 i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~---~~r~~gsyIyEEFi~t~-G~DI 211 (771)
...- ..+++|+|+||..|. .|-|+. .+.|... ...-.. ....+..+++||||+-. --+|
T Consensus 702 ~~~~-~~ig~PvvVKP~~~~-----------gG~Gv~----iv~~~~e-l~~~~~~a~~~~~~~~vlvEefI~g~~E~~V 764 (1073)
T 1a9x_A 702 VEKA-KEIGYPLVVRASYVL-----------GGRAME----IVYDEAD-LRRYFQTAVSVSNDAPVLLDHFLDDAVEVDV 764 (1073)
T ss_dssp HHHH-HHHCSSEEEEC------------------CEE----EECSHHH-HHHHHHHCC--------EEEBCCTTCEEEEE
T ss_pred HHHH-HHcCCCEEEEECCCC-----------CCCCeE----EECCHHH-HHHHHHHHHhhCCCCcEEEEEccCCCcEEEE
Confidence 2211 235689999999875 222332 1222111 110000 11135679999999753 3444
Q ss_pred EEEEECCc-eeEEEeeeCCCCCCeeeecCCCCceeeee---eCCH----HHHHHHHHHHHHhcC-ceeeEeEEeeCCCcE
Q 004147 212 KVYTVGPE-YAHAEARKSPVVDGVVMRNPDGKEVRYPV---LLTP----NEKQMAREVCIAFRQ-AVCGFDLLRCEGRSY 282 (771)
Q Consensus 212 KVytVG~~-~vhAe~RKSP~~DG~vrrN~~gke~r~pv---~Lt~----eEk~iA~ka~~afgq-~VcGfDLLRs~g~sy 282 (771)
-++.-|.. ++.+..+.- .+.+.|-|+....+ .|++ +-+++|.++++++|. .++++|++..+|++|
T Consensus 765 ~~l~d~~~v~~~~i~e~~------~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~~~~~~ 838 (1073)
T 1a9x_A 765 DAICDGEMVLIGGIMEHI------EQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVY 838 (1073)
T ss_dssp EEEECSSCEEEEEEEEES------SCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCEE
T ss_pred EEEEECCeEEEEeeEEEE------eccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCeEE
Confidence 44544443 344443321 12344544443332 5665 567799999999999 899999999888999
Q ss_pred EEecCC
Q 004147 283 VCDVNG 288 (771)
Q Consensus 283 VcDVNG 288 (771)
|+|||-
T Consensus 839 viEvNp 844 (1073)
T 1a9x_A 839 LIEVNP 844 (1073)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999994
No 64
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.81 E-value=1.7e-08 Score=122.89 Aligned_cols=197 Identities=20% Similarity=0.197 Sum_probs=119.5
Q ss_pred cceeeccccCCCChHHHHHHHHhcCC-cccCCchhhhHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCcccccccccc
Q 004147 57 CDCLIAFYSSGYPLEKAESYATLRKP-FLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEEE 133 (771)
Q Consensus 57 cd~lIsf~s~GfpL~kai~y~~lr~p-~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e~~ 133 (771)
+|++++-|+.---.....+.++..+. |+-++.++..+++||..+.++|+++|||+|++. .+... +
T Consensus 78 ~DaI~pg~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~~~v~s~------------e 145 (1150)
T 3hbl_A 78 VDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSY------------E 145 (1150)
T ss_dssp CSEEECTTTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCBCSS------------S
T ss_pred CCEEEECCCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccccCCCCH------------H
Confidence 66666543210001234556667774 455999999999999999999999999999987 33321 1
Q ss_pred ceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-------cCcceEEeeccCC
Q 004147 134 DFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFMPT 206 (771)
Q Consensus 134 d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-------~~gsyIyEEFi~t 206 (771)
+.... -..+++|+|+||..|. .|-|+ +.+.|....-. -....+ .++.+++||||+-
T Consensus 146 ea~~~-a~~iGyPvVVKP~~Gg-----------Gg~Gv----~vv~s~eeL~~-a~~~a~~~a~~~fg~~~vlVEeyI~G 208 (1150)
T 3hbl_A 146 LAKEF-AEEAGFPLMIKATSGG-----------GGKGM----RIVREESELED-AFHRAKSEAEKSFGNSEVYIERYIDN 208 (1150)
T ss_dssp TTTTT-GGGTCSSEEEECCC----------------------CEECCSSSCTH-HHHSSSSSCC------CBEEECCCSS
T ss_pred HHHHH-HHHcCCCEEEEeCCCC-----------CCCCE----EEECCHHHHHH-HHHHHHHHHHhhcCCCcEEEEEccCC
Confidence 22111 1235689999999886 33343 22433322111 111111 1578999999974
Q ss_pred CCceeEEEEECC---ceeEEEeeeCCCCCCeeeec-CCCCceeeee-eCCHH----HHHHHHHHHHHhcCc-eeeEeEEe
Q 004147 207 GGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRN-PDGKEVRYPV-LLTPN----EKQMAREVCIAFRQA-VCGFDLLR 276 (771)
Q Consensus 207 ~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrrN-~~gke~r~pv-~Lt~e----Ek~iA~ka~~afgq~-VcGfDLLR 276 (771)
.+.+-|-++|+ .++|...|... +.++ ....+. .|. .|+++ -.++|.++++++|.. ++.||++.
T Consensus 209 -~reieV~vl~d~~G~vv~l~er~~s-----~qr~~~k~~e~-~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflv 281 (1150)
T 3hbl_A 209 -PKHIEVQVIGDEHGNIVHLFERDCS-----VQRRHQKVVEV-APSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV 281 (1150)
T ss_dssp -CEEEEEEEEECSSSCEEEEEEEEEE-----EESSSCEEEEE-SSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred -CcEEEEEEEEeCCCCEEEEEeeccc-----eeccCceeEEe-cCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEE
Confidence 36777777764 56777666442 2222 111122 233 46664 457899999999964 56699999
Q ss_pred eCCCcEEEecCCc
Q 004147 277 CEGRSYVCDVNGW 289 (771)
Q Consensus 277 s~g~syVcDVNGw 289 (771)
+.+++|++|||--
T Consensus 282 d~d~~y~iEINpR 294 (1150)
T 3hbl_A 282 SGDEFFFIEVNPR 294 (1150)
T ss_dssp ETTEEEEEEEECS
T ss_pred ECCeEEEEEEeCC
Confidence 8789999999954
No 65
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.80 E-value=1.3e-08 Score=124.78 Aligned_cols=195 Identities=16% Similarity=0.220 Sum_probs=93.4
Q ss_pred cceeeccccCCCCh--HHHHHHHHhcCCcc-cCCchhhhHhhhHHHHHHHHHhCCCCCCCEE-EEeccCCCccccccccc
Q 004147 57 CDCLIAFYSSGYPL--EKAESYATLRKPFL-VNELEPQHLLHDRRKVYEQLEKYGIPVPRYA-LVNREVPYQELDYFIEE 132 (771)
Q Consensus 57 cd~lIsf~s~GfpL--~kai~y~~lr~p~~-iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~-~~~r~~p~~~~~~~~e~ 132 (771)
||+++.-| ||-. ....+.++..+..+ -++.++..++.||..+.++|+++|||+|+.. .+.. .
T Consensus 104 iDaI~pg~--g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~~~v~s------------~ 169 (1236)
T 3va7_A 104 AQAIIPGY--GFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGLIKD------------A 169 (1236)
T ss_dssp CSEEECCS--SGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC--------------------
T ss_pred CCEEEECC--ccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCeeEecCC------------H
Confidence 78888755 4422 23445666666544 5999999999999999999999999998853 3322 1
Q ss_pred cceeeecCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccc-------cCcceEEeeccC
Q 004147 133 EDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVR-------REGSYIYEEFMP 205 (771)
Q Consensus 133 ~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r-------~~gsyIyEEFi~ 205 (771)
++.... -..+++|+|+||..|. .|-|+. +.+....-...++ ..+ .++.+|+||||+
T Consensus 170 eea~~~-a~~iGyPvVVKP~~Gg-----------GGkGV~-iv~s~eEL~~a~~----~~~~~a~~~~~~~~vlVEeyI~ 232 (1236)
T 3va7_A 170 KEAKEV-AKKLEYPVMVKSTAGG-----------GGIGLQ-KVDSEDDIERVFE----TVQHQGKSYFGDAGVFMERFVN 232 (1236)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH-HHHcCCCEEEEeCCCC-----------CCCCEE-EECCHHHHHHHHH----HHHHHHHhccCCCcEEEeeccC
Confidence 222221 1246689999999886 444553 3333222112222 111 356799999997
Q ss_pred CCCceeEEEEECC---ceeEEEeeeCCCCCCeeeecCCCCceeeee-eCCHH----HHHHHHHHHHHhcCc-eeeEeEEe
Q 004147 206 TGGTDVKVYTVGP---EYAHAEARKSPVVDGVVMRNPDGKEVRYPV-LLTPN----EKQMAREVCIAFRQA-VCGFDLLR 276 (771)
Q Consensus 206 t~G~DIKVytVG~---~~vhAe~RKSP~~DG~vrrN~~gke~r~pv-~Lt~e----Ek~iA~ka~~afgq~-VcGfDLLR 276 (771)
- ++.+-|.++++ .+++.-.|..- ..+++..-.+. .|. .|+++ -.++|.++++++|.. +++||++.
T Consensus 233 G-~rEisV~vl~Dg~g~vv~l~~rd~s----~qr~~~k~~e~-~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfiv 306 (1236)
T 3va7_A 233 N-ARHVEIQMMGDGFGKAIAIGERDCS----LQRRNQKVIEE-TPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIY 306 (1236)
T ss_dssp C-CEEEEEEEEEESSSCEEEEEEEEEE----EEETTEEEEEE-ESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred C-CeEEEEEEEecCCceEEEEeeeeee----eeecCcceEEE-cCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEE
Confidence 5 58888888865 45665555321 11222111121 244 36664 457889999999985 89999999
Q ss_pred eC--CCcEEEecCC
Q 004147 277 CE--GRSYVCDVNG 288 (771)
Q Consensus 277 s~--g~syVcDVNG 288 (771)
+. +++||+|||-
T Consensus 307 d~d~g~~y~iEINp 320 (1236)
T 3va7_A 307 DEQRDEFYFLEVNA 320 (1236)
T ss_dssp ETTTTEEEEEEEEC
T ss_pred ECCCCcEEEEEEEC
Confidence 84 6899999995
No 66
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=98.48 E-value=7.1e-07 Score=95.05 Aligned_cols=170 Identities=15% Similarity=0.086 Sum_probs=90.7
Q ss_pred HhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccccCc
Q 004147 78 TLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDH 157 (771)
Q Consensus 78 ~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedH 157 (771)
+..+..+.-+..+.....||..-.+.|+++|||+|++. . +. +. .++.|+|+||..|.
T Consensus 80 e~~~~p~~p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~--~---~e----------e~------~i~~PviVKp~~g~-- 136 (320)
T 2pbz_A 80 EKAKARFFGNRRFLKWETTFELQDKALEGAGIPRVEVV--E---PE----------DA------KPDELYFVRIEGPR-- 136 (320)
T ss_dssp HTCCSCCBSCSSGGGGGSCHHHHHHHHHHHTCCBCCBC--C---SC----------CC------CSSCCEEEECC-----
T ss_pred HHcCCCcCCCHHHHHHHHhHHHHHHHHHHCCcCCCCee--C---Hh----------Hc------CcCCcEEEEECCCC--
Confidence 34555566677778888898888899999999999987 1 21 21 25689999999997
Q ss_pred ceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCC-CCceeEEEEE--CCceeEEEeeeCCCCCCe
Q 004147 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYTV--GPEYAHAEARKSPVVDGV 234 (771)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t-~G~DIKVytV--G~~~vhAe~RKSP~~DG~ 234 (771)
.|-|.. + +.| .++....... .+.+|.||||+. .......|-+ |.-.+-...++--+.||.
T Consensus 137 ---------ggkG~~-~---v~~--eel~~~~~~~--~~~~IiEEfI~g~~~~~~~f~~~~~g~~e~~~~~~r~e~~~g~ 199 (320)
T 2pbz_A 137 ---------GGSGHF-I---VEG--SELEERLSTL--EEPYRVERFIPGVYLYVHFFYSPILERLELLGVDERVLIADGN 199 (320)
T ss_dssp ----------------------C--EECSCCCC------CCEEEECCCSCEEEEEEEEETTTTEEEEEEEEEEEETTCSS
T ss_pred ---------CCCCEE-E---ECh--HHHHHHHHhc--CCCEEEEeeeceEecceeEEeccccCceeEEEecceEEEECCe
Confidence 344443 2 333 3333211011 267999999984 2211111111 100001111111113555
Q ss_pred eee-cCCCCcee---eeeeCC----HHHHHHHHHHHHHhc-------CceeeEeEEeeCCCcEEEecCC
Q 004147 235 VMR-NPDGKEVR---YPVLLT----PNEKQMAREVCIAFR-------QAVCGFDLLRCEGRSYVCDVNG 288 (771)
Q Consensus 235 vrr-N~~gke~r---~pv~Lt----~eEk~iA~ka~~afg-------q~VcGfDLLRs~g~syVcDVNG 288 (771)
.+- +..---+- .|..++ ++-.++|.+++.+++ ..+.++| +..+++.||+|||.
T Consensus 200 ~~~p~~~~~~~~~G~~P~~~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE-~~~dg~~~v~EIap 267 (320)
T 2pbz_A 200 ARWPVKPLPYTIVGNRAIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH-FAYDGSFKAIGIAS 267 (320)
T ss_dssp SSSCCSCCCCCEEEEEECEECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE-EECSSSCEEEEEES
T ss_pred eecccCCCceeeecCCCCccCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE-EcCCCcEEEEEecC
Confidence 533 11000000 155544 567789999999983 4566889 55567899999984
No 67
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=97.97 E-value=2.4e-05 Score=84.42 Aligned_cols=178 Identities=15% Similarity=0.120 Sum_probs=92.5
Q ss_pred hcCCcccCCchhhhHhhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecccc-Cc
Q 004147 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD-DH 157 (771)
Q Consensus 79 lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~Ge-dH 157 (771)
..+..+.-+-.+..+..||....+.|+++|||+|++ +. + + ++. ..|+|+||..+. .+
T Consensus 107 ~~g~~v~g~~~a~~~e~~k~~~k~~l~~~GIptp~~--~~-~-~----------~e~--------~~PvVVK~~~~a~Gk 164 (361)
T 2r7k_A 107 SFLVPMFGNRRILRWESERSLEGKLLREAGLRVPKK--YE-S-P----------EDI--------DGTVIVKFPGARGGR 164 (361)
T ss_dssp TCCSCBBSCGGGGGTTTCHHHHHHHHHHTTCCCCCE--ES-S-G----------GGC--------CSCEEEECSCCCC--
T ss_pred HcCCCcCCCHHHHHHhhhHHHHHHHHHHcCcCCCCE--eC-C-H----------HHc--------CCCEEEeeCCCCCCC
Confidence 455445556666667788888889999999999986 22 2 1 121 269999999875 23
Q ss_pred ceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCC-CCceeEEEEE-CCc-eeEEEeee--CCCCC
Q 004147 158 SIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT-GGTDVKVYTV-GPE-YAHAEARK--SPVVD 232 (771)
Q Consensus 158 ni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t-~G~DIKVytV-G~~-~vhAe~RK--SP~~D 232 (771)
+++|--.... ....++.+-.. ..+. -.++..+|.||||.. .......|-+ +++ .+-.+.++ +. .|
T Consensus 165 Gv~v~~s~ee---~~~a~~~~~~~-~~~~-----~~~~~~viIEEfl~G~e~s~~~f~~~~~~~~e~~~id~r~~~~-~d 234 (361)
T 2r7k_A 165 GYFIASSTEE---FYKKAEDLKKR-GILT-----DEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESN-ID 234 (361)
T ss_dssp -EEEESSHHH---HHHHHHHHHHT-TSCC-----HHHHHHCEEEECCCSEEEEEEEEEETTTTEEEEEEEEEEEEEE-HH
T ss_pred CEEEECCHHH---HHHHHHHHHhc-cccc-----cCCCCeEEEEeccceEEeeEEEEecccCCeeEEEEecceEEee-cc
Confidence 3332221111 11111111000 0000 011246899999984 2111112221 110 11111211 11 12
Q ss_pred Ceee----ec-CCCCceee------eeeCC----HHHHHHHHHHHHHhc-------CceeeEeEEeeC-CCcEEEecCC
Q 004147 233 GVVM----RN-PDGKEVRY------PVLLT----PNEKQMAREVCIAFR-------QAVCGFDLLRCE-GRSYVCDVNG 288 (771)
Q Consensus 233 G~vr----rN-~~gke~r~------pv~Lt----~eEk~iA~ka~~afg-------q~VcGfDLLRs~-g~syVcDVNG 288 (771)
|..+ .. ..+.+-.+ |..++ ++-.++|.+++.++| ..+.++++.-+. |+.||+|||.
T Consensus 235 gi~~~~~~~~~~~~~~p~~v~~G~~Pa~l~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~dg~i~V~EIap 313 (361)
T 2r7k_A 235 GLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVVFEMSA 313 (361)
T ss_dssp HHTTSCHHHHHTCCCCCCEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCEEEEEEES
T ss_pred cceecchhhhhcccCCCceEEecCcCCcCCHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcCCCCEEEEEEcC
Confidence 2221 00 01111112 66555 567789999999984 567789998774 5689999994
No 68
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=3.4e-07 Score=79.55 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=56.8
Q ss_pred hHhhhHHHHHHHHHhCCCCCCCEE--EEeccCCCccccccccccceeeecCeeccCcEEEeeccccCcceeEEeccCCCC
Q 004147 92 HLLHDRRKVYEQLEKYGIPVPRYA--LVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGG 169 (771)
Q Consensus 92 ~~l~DR~~~~qiL~~~gIP~P~t~--~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~GedHni~IYyp~~~Gg 169 (771)
.+++||..+.++|+++|||+|++. .+... ++.... ...+++|+|+||.+|. .|.
T Consensus 4 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~------------~~~~~~-~~~~~~P~vvKp~~~~-----------~~~ 59 (108)
T 2cqy_A 4 GSSGDKIESKLLAKKAEVNTIPGFDGVVKDA------------EEAVRI-AREIGYPVMIKASAGG-----------GGK 59 (108)
T ss_dssp CCCCCCCCSTTCCCSSCCCCCSCCCSCBSSH------------HHHHHH-HHHHCSSEEEEETTSC-----------CTT
T ss_pred hhhcCHHHHHHHHHHcCCCCCCCcccccCCH------------HHHHHH-HHhcCCCEEEEECCCC-----------CCc
Confidence 457789999999999999999987 44321 122221 1235689999999985 222
Q ss_pred hHHHHhhhcCCCccccccccccc------c-cCcceEEeeccCCCCceeEEEEEC
Q 004147 170 GMKELFRKVGNRSSEFHPDVRRV------R-REGSYIYEEFMPTGGTDVKVYTVG 217 (771)
Q Consensus 170 G~~rLfrkign~sS~~~~~~~~~------r-~~gsyIyEEFi~t~G~DIKVytVG 217 (771)
|+. + +.|... +..-.... . .+..+|+||||+- ..++.|-+||
T Consensus 60 gv~-~---v~~~~e-l~~~~~~~~~~~~~~~~~~~~lvee~i~g-~~E~~v~v~g 108 (108)
T 2cqy_A 60 GMR-I---AWDDEE-TRDGFRLSSQEAASSFGDDRLLIEKFIDN-PRHISGPSSG 108 (108)
T ss_dssp TCE-E---ESSHHH-HHHHHHHHHHHHHHHTSSCCEEEEECCSS-SSCCCSCCCC
T ss_pred cEE-E---eCCHHH-HHHHHHHHHHHHHhhcCCCcEEEeeccCC-CcEEEEEecC
Confidence 322 1 221111 11000011 0 1467999999974 3577777766
No 69
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP; 2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A* 1dkm_A 1dkn_A 1dko_A 1dkl_A
Probab=97.39 E-value=0.00021 Score=77.56 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=43.3
Q ss_pred cc---cch---HHHHHHHhc--CCCCCCchhhhhhcc---cccceEeecCCchhHhhHHHHHhhhhccc
Q 004147 489 YQ---DNG---VNEIAYWWG--SHSEGTGLLRLHSTY---RHDLKIYSSDEGRVQMSAAAFAKGLLDLE 546 (771)
Q Consensus 489 WG---~~g---Ae~LG~~fR--yp~~~~gLlrLhst~---rhDlKIysSdEgRVq~TAaaFakg~L~le 546 (771)
|| ..| .-+||+.+| |. ..|| |...| .+++.|+||+--|+.+||++|+.||.--.
T Consensus 44 ~g~LT~~G~~~~~~lG~~lr~ry~--~~~l--l~~~~~p~~~~v~v~st~~~RT~~SA~~~l~GlfP~~ 108 (410)
T 1dkq_A 44 LGWLTPRGGELIAYLGHYQRQRLV--ADGL--LAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDC 108 (410)
T ss_dssp TTCBCHHHHHHHHHHHHHHHHHHH--HTTS--SCSSSCCCTTTEEEEECSSHHHHHHHHHHHHHHSTTC
T ss_pred CCccchHHHHHHHHHHHHHHHHHH--hcCC--CccccCCCcceEEEEeCCcHHHHHHHHHHHhhcCCCC
Confidence 66 556 789999999 73 1355 56676 47899999999999999999999997543
No 70
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=97.19 E-value=1.3e-05 Score=80.53 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeeccc-cCcceeEEeccCCCChHH
Q 004147 94 LHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG-DDHSIMIYYPSSAGGGMK 172 (771)
Q Consensus 94 l~DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~G-edHni~IYyp~~~GgG~~ 172 (771)
..||..+.++|+++|||+|++.++... ++.... ...+++|+|+||.++ --| .+.|||+.
T Consensus 19 ~l~k~~~k~ll~~~GIp~p~~~~~~~~------------~ea~~~-a~~lg~PvvvKp~~~~~~~-------r~~~gGv~ 78 (238)
T 1wr2_A 19 AMVEYEAKQVLKAYGLPVPEEKLAKTL------------DEALEY-AKEIGYPVVLKLMSPQILH-------KSDAKVVM 78 (238)
T ss_dssp EECHHHHHHHHHTTTCCCCCCEEESSH------------HHHHHH-HHHHCSSEEEEEECTTCCC-------HHHHTCEE
T ss_pred CCCHHHHHHHHHHcCcCCCCeEEeCCH------------HHHHHH-HHHhCCCEEEEEccCCCCc-------CCccCCEE
Confidence 358999999999999999999988542 122221 123668999999997 211 11344553
Q ss_pred HHhhhcCCCccccccccccc-c---------cCcceEEeeccCCCCceeEEEEECCc
Q 004147 173 ELFRKVGNRSSEFHPDVRRV-R---------REGSYIYEEFMPTGGTDVKVYTVGPE 219 (771)
Q Consensus 173 rLfrkign~sS~~~~~~~~~-r---------~~gsyIyEEFi~t~G~DIKVytVG~~ 219 (771)
+ .+.|....-. -.... . ....+++|||++ .|+.+-|-++++.
T Consensus 79 -~--~v~~~~el~~-a~~~~~~~~~~~~~~~~~~~vlVEe~i~-~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 79 -L--NIKNEEELKK-KWEEIHENAKKYRPDAEILGVLVAPMLK-PGREVIIGVTEDP 130 (238)
T ss_dssp -E--EECSHHHHHH-HHHHHHHHHHHHCTTCCCCEEEEEECCC-CCEEEEEEEEEET
T ss_pred -E--eCCCHHHHHH-HHHHHHHhhhhhCCCCccceEEEEECCC-CCeEEEEEEEeCC
Confidence 2 1222111100 00000 0 135799999998 4677776666554
No 71
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A
Probab=95.60 E-value=0.023 Score=59.28 Aligned_cols=51 Identities=27% Similarity=0.343 Sum_probs=40.8
Q ss_pred cch---HHHHHHHhc--CCCCCCchhhhhhcc-cccceEeecCCchhHhhHHHHHhhhhcccC
Q 004147 491 DNG---VNEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (771)
Q Consensus 491 ~~g---Ae~LG~~fR--yp~~~~gLlrLhst~-rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (771)
..| ..+||+.|| |+ +|| ...| ..++.|+||+-.|+.+||++|+.||....|
T Consensus 40 ~~G~~q~~~lG~~lr~rY~----~ll--~~~~~~~~v~vrst~~~Rt~~SA~~fl~Gl~p~~~ 96 (354)
T 1nd6_A 40 QLGMEQHYELGEYIRKRYR----KFL--NESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEG 96 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTT----TTT--CSSCCGGGEEEEEESCHHHHHHHHHHHHHHSCCCG
T ss_pred HHHHHHHHHHHHHHHHHHH----HHh--ccccCcCeEEEEECCchHHHHHHHHHHHhcCCCCC
Confidence 455 788999999 96 443 3444 457899999999999999999999996543
No 72
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=94.12 E-value=0.072 Score=61.59 Aligned_cols=113 Identities=14% Similarity=0.148 Sum_probs=72.3
Q ss_pred HHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCC-CC---CEEEEeccCCCccccccccccceeeecCeeccCcEEEeec
Q 004147 77 ATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIP-VP---RYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPV 152 (771)
Q Consensus 77 ~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP-~P---~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv 152 (771)
+...+..+||.+.++- +.+|...--+.+.. | +| .|.+. ++.+ +. ...+|.||+
T Consensus 479 l~~~~v~iieP~~~~l-lsNKailalLw~l~--p~hp~LLpT~f~-------------~~~~-l~------~~~yV~KPi 535 (619)
T 2io8_A 479 LLRPEVLVFEPLWTVI-PGNKAILPILWSLF--PHHRYLLDTDFT-------------VNDE-LV------KTGYAVKPI 535 (619)
T ss_dssp HTCTTCEEESCGGGGT-TTSTTHHHHHHHHS--TTCTTCCCEESS-------------CCHH-HH------HHCEEEEET
T ss_pred HHhCCCEEECHHHHHH-hhhHHHHHHHHHhC--CCCCCCCCeeec-------------CCcc-cc------cCCEEEccC
Confidence 4466788999999865 77877554444433 3 44 33321 1111 11 135999999
Q ss_pred cc-cCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCCCCce-----eEEEEECCceeEEEee
Q 004147 153 HG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTD-----VKVYTVGPEYAHAEAR 226 (771)
Q Consensus 153 ~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t~G~D-----IKVytVG~~~vhAe~R 226 (771)
.| +..||.|+-+ .| . +........ .+..||||||++-...| |-+|+||++++.+..|
T Consensus 536 ~gReG~nV~i~~~--~~--~------------~~~~~~~~y-~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R 598 (619)
T 2io8_A 536 AGRCGSNIDLVSH--HE--E------------VLDKTSGKF-AEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLR 598 (619)
T ss_dssp TCCTTTTCEEECT--TS--C------------EEEECCCTT-TTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCEEEEeC--CC--h------------hHhhccccc-cCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEe
Confidence 99 6666666533 11 1 001000011 34679999999987789 9999999999999999
Q ss_pred eCC
Q 004147 227 KSP 229 (771)
Q Consensus 227 KSP 229 (771)
.++
T Consensus 599 ~~~ 601 (619)
T 2io8_A 599 GDE 601 (619)
T ss_dssp EES
T ss_pred cCC
Confidence 973
No 73
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A*
Probab=93.97 E-value=0.031 Score=59.40 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=41.7
Q ss_pred HHHHHHHhc--CCCCCCchhhhhhcc-cccceEeecCCchhHhhHHHHHhhhhcccCC
Q 004147 494 VNEIAYWWG--SHSEGTGLLRLHSTY-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548 (771)
Q Consensus 494 Ae~LG~~fR--yp~~~~gLlrLhst~-rhDlKIysSdEgRVq~TAaaFakg~L~lege 548 (771)
..+||+.|| |-.. .||| ..+| .+++.++||+..|+++||++|+.||..-.+.
T Consensus 48 ~~~lG~~lr~~Yv~~-~~~l--~~~~~~~~v~~rst~~~Rt~~Sa~~~l~Gl~p~~~~ 102 (342)
T 3it3_A 48 EYNLGLQLRKRYIDK-FGLL--PEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTG 102 (342)
T ss_dssp HHHHHHHHHHHHTTT-SCSS--CSSCCTTSEEEEECSSHHHHHHHHHHHHHHSCTTSS
T ss_pred HHHHHHHHHHHHhhc-cccc--cccccCceEEEEECCChHHHHHHHHHHHHhCCCCCC
Confidence 678999999 8322 2553 4445 6899999999999999999999999987663
No 74
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle, glycoprotein phosphohistidine, hydrolase; HET: NEP NAG; 1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB: 1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Probab=93.63 E-value=0.033 Score=60.70 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=45.8
Q ss_pred cc---cch---HHHHHHHhc--CCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhhhcccC-------CCCcce
Q 004147 489 YQ---DNG---VNEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG-------QLTPIL 553 (771)
Q Consensus 489 WG---~~g---Ae~LG~~fR--yp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~leg-------eltPIl 553 (771)
|| ..| ..+||+.|| |+ +|+ .. +.+.|.||+-.||.+||++|+.||....+ .+.|+.
T Consensus 101 ~G~LT~~G~~q~~~lG~~lr~rY~----~ll--~~---~~v~vrST~~~Rti~Sa~~fl~Gl~p~~~~~~~~~~~~~p~~ 171 (442)
T 1qwo_A 101 ADDLTPFGEQQLVNSGIKFYQRYK----ALA--RS---VVPFIRASGSDRVIASGEKFIEGFQQAKLADPGATNRAAPAI 171 (442)
T ss_dssp SSSBCHHHHHHHHHHHHHHHHHTH----HHH--TT---CCCEEEEESCHHHHHHHHHHHHHHHHHHHTCTTCCCCCCCCE
T ss_pred cccchHHHHHHHHHHHHHHHHHHH----HHh--cc---CceEEEeCCccHHHHHHHHHHHHhcCCcccccccccccCccc
Confidence 66 667 789999999 95 554 22 46889999999999999999999987542 245766
Q ss_pred eeeE
Q 004147 554 VSLV 557 (771)
Q Consensus 554 v~~V 557 (771)
+..+
T Consensus 172 ~~~i 175 (442)
T 1qwo_A 172 SVII 175 (442)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 4334
No 75
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Probab=93.50 E-value=0.069 Score=58.78 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=39.4
Q ss_pred HHHHHHHhc--CCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhhhcccCC
Q 004147 494 VNEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548 (771)
Q Consensus 494 Ae~LG~~fR--yp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~lege 548 (771)
..+||+.|| |+ +|+ .. ...+.|+||+-.||.+||++|+.||......
T Consensus 137 ~~~lG~~lr~rY~----~ll--~~--~~~v~vrST~~~Rti~SA~~fl~Glfp~~~~ 185 (458)
T 2gfi_A 137 AMKHGIAFRTKYG----ELF--DT--NDTLPVFTSNSGRVYQTSQYFARGFMGDDFS 185 (458)
T ss_dssp HHHHHHHHHHHHG----GGC--CT--TSCEEEEEESBHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHhH----Hhc--Cc--CCceEEEecCCchHHHHHHHHHHhccCCCcc
Confidence 789999999 95 453 22 4678999999999999999999999987654
No 76
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate phosphohydrolase, 37288-11-2, MYO-inositol hexakis sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger} SCOP: c.60.1.2 PDB: 3k4p_A* 1ihp_A
Probab=93.23 E-value=0.065 Score=59.19 Aligned_cols=48 Identities=23% Similarity=0.134 Sum_probs=38.6
Q ss_pred cch---HHHHHHHhc--CCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhhhcccC
Q 004147 491 DNG---VNEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (771)
Q Consensus 491 ~~g---Ae~LG~~fR--yp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (771)
..| +.+||+.|| |+ .|+. . .++.++||+-.||.+||++|+.||+..++
T Consensus 107 ~~G~~~~~~lG~~~r~rY~----~l~~--~---~~~~~rst~~~Rt~~Sa~~f~~Gl~~~~~ 159 (444)
T 3k4q_A 107 PFGEQELVNSGIKFYQRYE----SLTR--N---IVPFIRSSGSSRVIASGKKFIEGFQSTKL 159 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTH----HHHT--T---CCCEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH----Hhcc--C---CceEEEeCCccHHHHHHHHHHHhcCCCcc
Confidence 456 788999999 86 3432 1 35779999999999999999999998653
No 77
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase; HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP: c.60.1.2
Probab=92.52 E-value=0.064 Score=59.20 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=39.4
Q ss_pred ch---HHHHHHHhc--CCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhhhccc
Q 004147 492 NG---VNEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLE 546 (771)
Q Consensus 492 ~g---Ae~LG~~fR--yp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~L~le 546 (771)
.| ..+||+.|| |+ +|| .. ...+.|+||+-.||.+||++|+.||...+
T Consensus 121 ~G~~q~~~lG~~lr~rY~----~ll--~~--~~~v~vrST~~~Rti~SA~~fl~Glf~~~ 172 (460)
T 1qfx_A 121 AGLLDAYNHGNDYKARYG----HLW--NG--ETVVPFFSSGYGRVIETARKFGEGFFGYN 172 (460)
T ss_dssp CHHHHHHHHHHHHHHHHG----GGC--CS--SSCEEEEEESBHHHHHHHHHHHHHHHGGG
T ss_pred CcHHHHHHHHHHHHHHhH----HHh--CC--CCceEEEECCCcHHHHHHHHHHHHhcCCc
Confidence 67 789999999 85 453 22 56789999999999999999999998754
No 78
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A
Probab=92.19 E-value=0.05 Score=59.15 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=41.1
Q ss_pred cch---HHHHHHHhc--CCCCCCchhhhhh-ccc-ccceEeecCCchhHhhHHHHHhhhhcccC
Q 004147 491 DNG---VNEIAYWWG--SHSEGTGLLRLHS-TYR-HDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (771)
Q Consensus 491 ~~g---Ae~LG~~fR--yp~~~~gLlrLhs-t~r-hDlKIysSdEgRVq~TAaaFakg~L~leg 547 (771)
..| ..+||+.|| |+. .||+ .. .|- .++.++||+-.|+++||++|+.||.-..+
T Consensus 58 ~~G~~q~~~lG~~lr~rY~~--~~ll--~~~~~~~~~v~~rst~~~Rt~~Sa~~fl~Gl~p~~~ 117 (418)
T 2wnh_A 58 GHGYAAVVNKGREEGQHYRQ--LGLL--QAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCG 117 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TTSS--CSSSCCTTTEEEEECSSHHHHHHHHHHHHHHSTTCC
T ss_pred hhHHHHHHHHHHHHHHHHHh--cCCc--ccCCCCCCeEEEEECCCHHHHHHHHHHHHHcCCCCC
Confidence 556 788999998 863 2453 33 244 57999999999999999999999986543
No 79
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=91.47 E-value=0.051 Score=59.48 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccC-cEEEeec
Q 004147 97 RRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWK-PFVEKPV 152 (771)
Q Consensus 97 R~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~k-PfVeKpv 152 (771)
...+-++|+++|||+|+..++... ++.... -..++. |+|+||.
T Consensus 5 E~~aK~lL~~~GIpvp~~~~~~s~------------~ea~~~-a~~lg~~PvVvK~~ 48 (395)
T 2fp4_B 5 EYQSKKLMSDNGVKVQRFFVADTA------------NEALEA-AKRLNAKEIVLKAQ 48 (395)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSH------------HHHHHH-HHHHTCSSEEEEEC
T ss_pred HHHHHHHHHHCCcCCCCeEEECCH------------HHHHHH-HHHcCCCcEEEEEe
Confidence 456778999999999999988542 222221 123567 8999995
No 80
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=90.94 E-value=0.29 Score=53.33 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCc-EEEeeccc
Q 004147 96 DRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKP-FVEKPVHG 154 (771)
Q Consensus 96 DR~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kP-fVeKpv~G 154 (771)
+...+-++|+++|||+|+..++... ++.... -..+++| +|+||..+
T Consensus 4 ~E~~aK~lL~~~GIpvp~~~~~~s~------------eea~~a-a~~lG~P~vVvK~~~~ 50 (388)
T 2nu8_B 4 HEYQAKQLFARYGLPAPVGYACTTP------------REAEEA-ASKIGAGPWVVKCQVH 50 (388)
T ss_dssp CHHHHHHHHHHTTCCCCCEEEESSH------------HHHHHH-HHHHCSSCEEEEECCS
T ss_pred CHHHHHHHHHHCCcCCCCeeEECCH------------HHHHHH-HHHhCCCeEEEEEecC
Confidence 4567889999999999999988642 122221 1245689 99999874
No 81
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella tularensis subsp} PDB: 4e3w_A 2glc_A 2glb_A 2gla_A 3it0_A* 3it1_A* 3it2_A 2p36_A*
Probab=90.22 E-value=0.12 Score=54.78 Aligned_cols=55 Identities=24% Similarity=0.213 Sum_probs=32.6
Q ss_pred ccceEEEEEEEEcCCCCcCceeeEEechHHHHHHHHhhcCCCCccceeeccHHhHHHHHHHHHhhc
Q 004147 353 SEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDATRILV 418 (771)
Q Consensus 353 ~~eLr~vv~ViRHgDRTPKQK~K~~~~~~~f~~l~~~~~~~~~~~e~klk~~~~L~~~ld~~~~~l 418 (771)
+.+|+-|+.+.|||||||..-.. ..+ .. +.. +-+++.-+...|+..+=...|.-.
T Consensus 5 ~~~L~~v~v~~RHG~R~p~~~~p----~~~----~~-w~~--~~g~LT~~G~~q~~~lG~~lr~~Y 59 (342)
T 3it3_A 5 SSKLIFVSMITRHGDRAPFANIE----NAN----YS-WGT--ELSELTPIGMNQEYNLGLQLRKRY 59 (342)
T ss_dssp -CEEEEEEEEEECCCBCCSSCCT----TCC----CC-CSS--CTTCBCHHHHHHHHHHHHHHHHHH
T ss_pred ccEeeEEEEEEeCCCCCCcccCC----CCc----cc-CCC--ChHhhhHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999985321 110 00 211 134566666666665555555443
No 82
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A*
Probab=89.95 E-value=0.17 Score=55.42 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=39.4
Q ss_pred HHHHHHHhc--CCCCCCchhhhhhc--c-cccceEeecCCchhHhhHHHHHhhhhcccC
Q 004147 494 VNEIAYWWG--SHSEGTGLLRLHST--Y-RHDLKIYSSDEGRVQMSAAAFAKGLLDLEG 547 (771)
Q Consensus 494 Ae~LG~~fR--yp~~~~gLlrLhst--~-rhDlKIysSdEgRVq~TAaaFakg~L~leg 547 (771)
.-+||+.|| |. ..||+ ... | ..++.++||+--|+++||++|+.||.--.|
T Consensus 55 ~~~lG~~lr~rY~--~~~ll--~~~~~~~~~~v~vrst~~~Rt~~SA~~fl~Gl~P~~~ 109 (398)
T 3ntl_A 55 EVYMGHYMREWLA--QQGMV--KTGECPAADSVYAYANSLQRTVATAQFFITGAFPGCD 109 (398)
T ss_dssp HHHHHHHHHHHHH--HTTSS--CTTSCCCTTSEEEEECSSHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHh--hcCCC--ccccCCCcCeEEEEECCchHHHHHHHHHHHHhCCCCC
Confidence 678999999 82 12553 332 3 378999999999999999999999997654
No 83
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP: c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A* 2l3h_A 2l77_A 2l79_A
Probab=87.19 E-value=0.27 Score=51.17 Aligned_cols=20 Identities=50% Similarity=0.848 Sum_probs=17.9
Q ss_pred ceEEEEEEEEcCCCCcCcee
Q 004147 355 ELRCVIAVMRHGDRTPKQKV 374 (771)
Q Consensus 355 eLr~vv~ViRHgDRTPKQK~ 374 (771)
+|+-|+.|.|||||||...+
T Consensus 2 ~L~~v~vl~RHG~R~P~~~~ 21 (354)
T 1nd6_A 2 ELKFVTLVFRHGDRSPIDTF 21 (354)
T ss_dssp EEEEEEEEEECCCBCCSCCC
T ss_pred eeEEEEEEecCCCCCCcccc
Confidence 78999999999999998753
No 84
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=86.55 E-value=0.48 Score=51.81 Aligned_cols=43 Identities=28% Similarity=0.392 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCCCCCEEEEeccCCCccccccccccceeeecCeeccCcEEEeecc
Q 004147 98 RKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVH 153 (771)
Q Consensus 98 ~~~~qiL~~~gIP~P~t~~~~r~~p~~~~~~~~e~~d~i~v~g~~~~kPfVeKpv~ 153 (771)
..+.++|++.|||+|++.++... ++.... -..+++|+|+||.+
T Consensus 6 ~~aK~lL~~~GIpvp~~~~~~s~------------eea~~a-a~~lG~PvVvKa~~ 48 (397)
T 3ufx_B 6 YQAKEILARYGVPVPPGKVAYTP------------EEAKRI-AEEFGKRVVIKAQV 48 (397)
T ss_dssp HHHHHHHHHTTCCCCCEEEESSH------------HHHHHH-HHHHTSCEEEEECC
T ss_pred HHHHHHHHHCCCCCCCeEEECCH------------HHHHHH-HHHcCCCEEEEEcc
Confidence 46788999999999999998652 222221 12456899999988
No 85
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase, phytate binding site, hydrolase; HET: IHP; 1.88A {Enterobacter cloacae} PDB: 1nt4_A*
Probab=84.44 E-value=0.45 Score=52.03 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=17.4
Q ss_pred ccceEEEEEEEEcCCCCcC
Q 004147 353 SEELRCVIAVMRHGDRTPK 371 (771)
Q Consensus 353 ~~eLr~vv~ViRHgDRTPK 371 (771)
..+|+-|+.|.|||||||-
T Consensus 4 ~~~L~~V~vl~RHG~R~P~ 22 (398)
T 3ntl_A 4 GYQLEQVLIMSRANLRAPL 22 (398)
T ss_dssp TEEEEEEEEEEECCSBCCC
T ss_pred CCEEEEEEEEecCCCCCCC
Confidence 4799999999999999993
No 86
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=84.20 E-value=0.26 Score=53.95 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=59.9
Q ss_pred ccCCchhhhHhhhHHHHHHHHHh------CCCCCCCEEEE-ecc--CCC---cc----c---cccccccceee-e-----
Q 004147 84 LVNELEPQHLLHDRRKVYEQLEK------YGIPVPRYALV-NRE--VPY---QE----L---DYFIEEEDFVE-V----- 138 (771)
Q Consensus 84 ~iNdl~~q~~l~DR~~~~qiL~~------~gIP~P~t~~~-~r~--~p~---~~----~---~~~~e~~d~i~-v----- 138 (771)
.||-++-...+--|-.-.+.|++ .-==.|+|..+ ..+ .|. .. . ...-|.++++. +
T Consensus 64 ~vNhfPg~~~l~rKd~L~~nl~~~~~~~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~ 143 (380)
T 3tig_A 64 LVNYYRGADKLCRKASLVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKE 143 (380)
T ss_dssp EESCCTTTHHHHSHHHHHHHHHHCHHHHTTCTTSCCEEECCC------------------------CCHHHHHHHHHHHH
T ss_pred EEeecCCcccccccHHHHHHHHHhhhcccccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhh
Confidence 67888777666666655555544 34457888887 322 110 00 0 00012222322 1
Q ss_pred cCeeccCcEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCC------CC--ce
Q 004147 139 HGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT------GG--TD 210 (771)
Q Consensus 139 ~g~~~~kPfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t------~G--~D 210 (771)
+| -+.++|+||..|+ +|-|.. |++....-...++ .....||.|+||.. +| -|
T Consensus 144 ~~--~~~~wI~KP~~~s-----------rG~GI~-l~~~~~~i~~~~~------~~~~~~VvQkYI~~PlLi~~~grKFD 203 (380)
T 3tig_A 144 NE--EGNVWIAKSSSGA-----------KGEGIL-ISSDATELLDFID------NQGQVHVIQKYLESPLLLEPGHRKFD 203 (380)
T ss_dssp TT--CCCCEEEEESCC---------------CCB-CCSCSHHHHHHHH------HHTSCEEEEECCSSBCCBTTTTBCEE
T ss_pred cC--CCCeEEEeCCccC-----------CCCCEE-EeCCHHHHHHHHh------ccCCcEEEEecccCceeecCCCceeE
Confidence 12 2479999999998 787864 6664321000011 13568999999975 45 59
Q ss_pred eEEEEEC
Q 004147 211 VKVYTVG 217 (771)
Q Consensus 211 IKVytVG 217 (771)
||+||+-
T Consensus 204 lR~Yvlv 210 (380)
T 3tig_A 204 IRSWVLV 210 (380)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999883
No 87
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella pneumoniae} PDB: 2wni_A 2wu0_A
Probab=82.18 E-value=0.74 Score=49.97 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.4
Q ss_pred CccceEEEEEEEEcCCCCcCce
Q 004147 352 QSEELRCVIAVMRHGDRTPKQK 373 (771)
Q Consensus 352 ~~~eLr~vv~ViRHgDRTPKQK 373 (771)
...+|+.|+.+.|||||||..+
T Consensus 12 ~~~~l~~v~~~~RHG~R~P~~~ 33 (418)
T 2wnh_A 12 RDWQLEKVVELSRHGIRPPTAG 33 (418)
T ss_dssp CCEEEEEEEEEEECCCCCCCHH
T ss_pred CCCEEEEEEEEEeCCCCCCCCC
Confidence 3579999999999999999764
No 88
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=80.42 E-value=0.76 Score=51.65 Aligned_cols=82 Identities=23% Similarity=0.355 Sum_probs=47.6
Q ss_pred cEEEeeccccCcceeEEeccCCCChHHHHhhhcCCCcccccccc--ccc-ccCcceEEeeccCC-------CC------c
Q 004147 146 PFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDV--RRV-RREGSYIYEEFMPT-------GG------T 209 (771)
Q Consensus 146 PfVeKpv~GedHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~--~~~-r~~gsyIyEEFi~t-------~G------~ 209 (771)
-+|+||+.|. .|.|+- +|...|.-+-+. ..+ .....||.||+++- +| .
T Consensus 364 ~lViKp~~g~-----------gg~gv~-----iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~ 427 (474)
T 3n6x_A 364 ELVVKEVQGS-----------GGYGML-----VGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHV 427 (474)
T ss_dssp GEEEEECCCE----------------E-----EGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEE
T ss_pred heEEEecCCC-----------CCCceE-----ECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeE
Confidence 5999999986 233332 343322111100 012 24567999999972 23 5
Q ss_pred eeEEEEECCc----eeEEEeeeCCCCCCeeeecCC-CCce
Q 004147 210 DVKVYTVGPE----YAHAEARKSPVVDGVVMRNPD-GKEV 244 (771)
Q Consensus 210 DIKVytVG~~----~vhAe~RKSP~~DG~vrrN~~-gke~ 244 (771)
|+|+|++.++ +..+-+|-|+. .|..--|.. ||+.
T Consensus 428 dlR~F~~~g~~~~v~pGgltRva~~-~~~~vvn~s~Gggs 466 (474)
T 3n6x_A 428 DLRPFVLSGKTVSLVPGALCRVALR-EGSLVVNSSQGGGT 466 (474)
T ss_dssp EEECEEEESSSEEECSCCEEEEECS-TTCCCCSTTSSEEE
T ss_pred EEEEEEEcCCceEEecceEEEEecC-CCCceEECCCCCcc
Confidence 9999999555 67889999975 344334444 5543
No 89
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural genomics, isomerase, structural GE consortium, SGC; 2.40A {Plasmodium falciparum}
Probab=71.99 E-value=2 Score=42.13 Aligned_cols=37 Identities=19% Similarity=0.059 Sum_probs=28.3
Q ss_pred HHHHHHHhc--CCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWG--SHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fR--yp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.|+ +++ . .=-.||||+-.|++.||++++.++
T Consensus 53 A~~l~~~L~~~~~~-----------~-~~~~i~sSpl~Ra~qTA~~i~~~~ 91 (214)
T 3eoz_A 53 ADITGKKLKDILNN-----------K-KVSVIYHSDMIRAKETANIISKYF 91 (214)
T ss_dssp HHHHHHHHHHHHTT-----------C-CEEEEEECSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccc-----------C-CCCEEEECCcHHHHHHHHHHHHHC
Confidence 889999888 211 0 112499999999999999998875
No 90
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=70.77 E-value=2.9 Score=39.12 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.|+-. | +.-| .||||+-.|++.||++++.++
T Consensus 31 A~~l~~~l~~~----~-------~~~~-~i~sSpl~Ra~qTA~~i~~~~ 67 (161)
T 1ujc_A 31 SRLMANWLKGQ----K-------VEIE-RVLVSPFLRAEQTLEEVGDCL 67 (161)
T ss_dssp HHHHHHHHHHT----T-------CCCC-EEEECSSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhc----C-------CCCC-EEEeCchHHHHHHHHHHHHhc
Confidence 89999998810 1 1112 599999999999999999864
No 91
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=69.73 E-value=3.2 Score=39.91 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++.- | +.= -.||||+-.|++.||++++.++
T Consensus 41 A~~l~~~l~~~----~-------~~~-~~i~sSpl~Ra~qTA~~i~~~~ 77 (202)
T 3mxo_A 41 AELTGLRLASL----G-------LKF-NKIVHSSMTRAIETTDIISRHL 77 (202)
T ss_dssp HHHHHHHHHTT----C-------CCC-SEEEEESSHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhc----C-------CCC-CEEEECChHHHHHHHHHHHHhC
Confidence 89999998821 1 011 1599999999999999999876
No 92
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=67.74 E-value=3.6 Score=41.00 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++-. | ..=| .||||+-.|++.||+++++++
T Consensus 44 A~~l~~~L~~~----~-------~~~d-~i~sSpl~Ra~qTA~~i~~~~ 80 (257)
T 3gp3_A 44 ARQAGQLLKEA----G-------YTFD-IAYTSVLKRAIRTLWHVQDQM 80 (257)
T ss_dssp HHHHHHHHHHT----T-------CCCS-EEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----C-------CCCC-EEEeCChHHHHHHHHHHHHhc
Confidence 89999998821 1 1112 599999999999999999886
No 93
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=67.17 E-value=3.8 Score=40.80 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++-. | ..-| .||||+-.|++.||+++++++
T Consensus 46 A~~l~~~L~~~----~-------~~~d-~i~sSpl~Ra~qTA~~i~~~~ 82 (258)
T 3kkk_A 46 AIAAGKYLKEK----N-------FKFD-VVYTSVLKRAICTAWNVLKTA 82 (258)
T ss_dssp HHHHHHHHHHT----T-------CCCS-EEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----C-------CCCC-EEEECchHHHHHHHHHHHHhc
Confidence 88899888710 1 1112 599999999999999999987
No 94
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=66.11 E-value=4.1 Score=41.11 Aligned_cols=35 Identities=9% Similarity=0.104 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++- +.=| .||||+-.||+.||++++.++
T Consensus 39 A~~l~~~l~~-------------~~~~-~i~sSpl~Ra~qTA~~i~~~~ 73 (265)
T 3e9c_A 39 AAAAGRYLKD-------------LHFT-NVFVSNLQRAIQTAEIILGNN 73 (265)
T ss_dssp HHHHHHHTTT-------------CCCS-EEEECSSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhc-------------CCCC-EEEECCcHHHHHHHHHHHHhc
Confidence 8999998871 1111 599999999999999999886
No 95
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Probab=65.45 E-value=3.2 Score=45.54 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.6
Q ss_pred CccceEEEEEEEEcCCCCcCc
Q 004147 352 QSEELRCVIAVMRHGDRTPKQ 372 (771)
Q Consensus 352 ~~~eLr~vv~ViRHgDRTPKQ 372 (771)
...+|+-|..|.|||+|||-.
T Consensus 57 ~~~~l~~V~~l~RHG~R~P~~ 77 (458)
T 2gfi_A 57 DQCTLEQVQLFSRHGERYPST 77 (458)
T ss_dssp TTEEEEEEEEEEECCSBCCCH
T ss_pred CCceEEEEeeeeccccCCCCc
Confidence 457999999999999999954
No 96
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=64.64 E-value=4.5 Score=39.90 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++-- | ..=| .||||+-.|++.||+++++++
T Consensus 35 A~~l~~~L~~~----~-------~~~d-~i~sSpl~Ra~qTA~~i~~~~ 71 (240)
T 1qhf_A 35 AARAGELLKEK----K-------VYPD-VLYTSKLSRAIQTANIALEKA 71 (240)
T ss_dssp HHHHHHHHHHT----T-------CCCS-EEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc----C-------CCcC-EEEECCcHHHHHHHHHHHHhc
Confidence 88899988710 1 1112 499999999999999999875
No 97
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=64.45 E-value=7.2 Score=45.48 Aligned_cols=66 Identities=14% Similarity=0.312 Sum_probs=33.2
Q ss_pred cEEEeeccc-cCcceeEEeccCCCChHHHHhhhcCCCcccccccccccccCcceEEeeccCC---CC--ceeEEEEECCc
Q 004147 146 PFVEKPVHG-DDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPT---GG--TDVKVYTVGPE 219 (771)
Q Consensus 146 PfVeKpv~G-edHni~IYyp~~~GgG~~rLfrkign~sS~~~~~~~~~r~~gsyIyEEFi~t---~G--~DIKVytVG~~ 219 (771)
.+|.||+.| +..||.|+-+ ++ . .... ....-.+..||||||++- .| .=|=+|+||++
T Consensus 544 ~yV~KPi~gReG~nV~I~~~----~~-~-~~~~-----------~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~ 606 (652)
T 2vob_A 544 GYAKKPIVGRVGSNVIITSG----DG-V-VHAE-----------SGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDA 606 (652)
T ss_dssp CEEEEECC--------------------------------------------CEEEEECCC--CBTTBCCEEEEEEETTE
T ss_pred CeEeccCCCCCCCCEEEEcC----Cc-h-hhhh-----------cccccCCCCeEEEecccCCccCCcceEEEEEEECCE
Confidence 599999999 7666666521 11 1 1110 001114577999999975 22 45778999999
Q ss_pred eeEEEeeeC
Q 004147 220 YAHAEARKS 228 (771)
Q Consensus 220 ~vhAe~RKS 228 (771)
++..-.|.+
T Consensus 607 ~aGi~iR~~ 615 (652)
T 2vob_A 607 FSGTGIRED 615 (652)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEEecC
Confidence 999999986
No 98
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle, glycoprotein phosphohistidine, hydrolase; HET: NEP NAG; 1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB: 1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Probab=64.42 E-value=2.9 Score=45.46 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.3
Q ss_pred CccceEEEEEEEEcCCCCcCc
Q 004147 352 QSEELRCVIAVMRHGDRTPKQ 372 (771)
Q Consensus 352 ~~~eLr~vv~ViRHgDRTPKQ 372 (771)
...+|+=|..|.|||+|||--
T Consensus 45 ~g~~l~~V~vl~RHG~R~P~~ 65 (442)
T 1qwo_A 45 KDCRITLVQVLSRHGARYPTS 65 (442)
T ss_dssp TTEEEEEEEEEEECCCBCCCH
T ss_pred CCCeeEEEEEEecCcCcCCCc
Confidence 357999999999999999953
No 99
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=64.34 E-value=4.6 Score=39.15 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.++- ..=| .||||+-.|++.||++++.++
T Consensus 36 A~~~~~~l~~-------------~~~~-~i~sSpl~Ra~qTA~~i~~~~ 70 (207)
T 1h2e_A 36 AMRLGKRLEA-------------VELA-AIYTSTSGRALETAEIVRGGR 70 (207)
T ss_dssp HHHHHHHTTT-------------SCCS-EEEECSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcC-------------CCCC-EEEECccHHHHHHHHHHHhcC
Confidence 8889998871 1112 599999999999999998753
No 100
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=64.06 E-value=4.7 Score=40.42 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++-. | ..=| .||||+-.|++.||++++.++
T Consensus 66 A~~l~~~L~~~----~-------~~~d-~v~sSpl~Ra~qTA~~i~~~~ 102 (264)
T 3mbk_A 66 ARLVGEALLES----N-------TVID-HVYCSPSLRCVQTAHNILKGL 102 (264)
T ss_dssp HHHHHHHHHHT----T-------CCCC-EEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----C-------CCcC-EEEECcHHHHHHHHHHHHHHh
Confidence 89999998710 1 1111 499999999999999999986
No 101
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=62.64 E-value=4.8 Score=39.52 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++ ++ . =-.||||+-.|++.||++++.++
T Consensus 48 A~~l~~~l~------~~-------~-~~~i~sSpl~Ra~qTA~~i~~~~ 82 (237)
T 3r7a_A 48 ATNLGTGLK------DI-------H-FMNAYSSDSGRAIETANLVLKYS 82 (237)
T ss_dssp HHHHHHHTT------TS-------C-EEEEEECSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc------CC-------C-CCEEEECCcHHHHHHHHHHHHhc
Confidence 888998887 11 0 11599999999999999999876
No 102
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=61.67 E-value=5.4 Score=40.23 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++-- | +.=| .||||+-.|++.||+++++++
T Consensus 38 A~~l~~~L~~~----~-------~~~d-~i~sSpl~Ra~qTA~~i~~~~ 74 (267)
T 2hhj_A 38 ARNCGKQLKAL----N-------FEFD-LVFTSVLNRSIHTAWLILEEL 74 (267)
T ss_dssp HHHHHHHHHHT----T-------CCCS-EEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----C-------CCcC-EEEECCcHHHHHHHHHHHHhc
Confidence 88999988710 1 1112 499999999999999999876
No 103
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=61.60 E-value=5.5 Score=39.87 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++-. | ..=| .||||+-.|++.||++++.++
T Consensus 68 A~~l~~~L~~~----~-------~~~d-~i~sSpl~Ra~qTA~~i~~~~ 104 (263)
T 3c7t_A 68 AQLVGEGMRMA----G-------VSIK-HVYASPALRCVETAQGFLDGL 104 (263)
T ss_dssp HHHHHHHHHHT----T-------CCCC-EEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC----C-------CCCC-EEEECCcHHHHHHHHHHHHHc
Confidence 88999988710 1 1112 599999999999999999875
No 104
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=61.44 E-value=5.6 Score=39.40 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.|+-- | +.=| .||||+-.|++.||++++.++
T Consensus 37 A~~l~~~l~~~----~-------~~~d-~i~sSpl~Ra~qTA~~i~~~~ 73 (249)
T 1e58_A 37 AKAAGKLLKEE----G-------YSFD-FAYTSVLKRAIHTLWNVLDEL 73 (249)
T ss_dssp HHHHHHHHHHT----T-------CCCS-EEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----C-------CCCc-EEEECCcHHHHHHHHHHHHhc
Confidence 88999988710 1 1112 599999999999999999876
No 105
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase; HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP: c.60.1.2
Probab=60.14 E-value=4.6 Score=44.44 Aligned_cols=21 Identities=48% Similarity=0.650 Sum_probs=18.5
Q ss_pred CccceEEEEEEEEcCCCCcCc
Q 004147 352 QSEELRCVIAVMRHGDRTPKQ 372 (771)
Q Consensus 352 ~~~eLr~vv~ViRHgDRTPKQ 372 (771)
...+|+=|..|.|||+|+|-.
T Consensus 50 ~g~~l~~V~vl~RHG~R~P~~ 70 (460)
T 1qfx_A 50 TSCEVDQVIMVKRHGERYPSP 70 (460)
T ss_dssp TTEEEEEEEEEEECCSBCCCH
T ss_pred CCCeEEEEEEEeccCcCCCCc
Confidence 457999999999999999954
No 106
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=59.74 E-value=6.2 Score=39.91 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++-- | +.=| .||||+-.|++.||++++.++
T Consensus 55 A~~l~~~L~~~----~-------~~~d-~i~sSpl~Ra~qTA~~i~~~~ 91 (267)
T 3d8h_A 55 AIEAGRMLLEK----G-------FKFD-VVYTSVLKRAIMTTWTVLKEL 91 (267)
T ss_dssp HHHHHHHHHHT----T-------CCCS-EEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----C-------CCCC-EEEECChHHHHHHHHHHHHhc
Confidence 88999988710 1 1112 499999999999999999876
No 107
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=58.86 E-value=6.4 Score=39.75 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++-. ...=| .||||+-.|++.||+++++++
T Consensus 62 A~~l~~~L~~~-----------~~~~~-~i~sSpl~Ra~qTA~~i~~~~ 98 (268)
T 4eo9_A 62 AVRSGELLAEH-----------NLLPD-VLYTSLLRRAITTAHLALDTA 98 (268)
T ss_dssp HHHHHHHHHHT-----------TCCCS-EEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc-----------CCCCC-EEEECCcHHHHHHHHHHHHhc
Confidence 88888888710 01112 599999999999999999876
No 108
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced glycolysis and apoptosis regulator, CAsp target, structural genomics medical relevance; HET: MSE; 1.75A {Homo sapiens}
Probab=58.40 E-value=6.2 Score=40.01 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++- + .--.||||.-.|++.||++++.++
T Consensus 44 A~~l~~~l~~-------------~-~~~~v~sSpl~Ra~qTA~~i~~~~ 78 (275)
T 3dcy_A 44 AAAAGIFLNN-------------V-KFTHAFSSDLMRTKQTMHGILERS 78 (275)
T ss_dssp HHHHHHHTTT-------------C-CCSEEEECSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcc-------------C-CCCEEEECChHHHHHHHHHHHHhc
Confidence 8889988871 1 112599999999999999999876
No 109
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=58.34 E-value=6.6 Score=39.71 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++-- | ..=| .||||+-.|++-||+++++++
T Consensus 62 A~~l~~~L~~~----~-------~~~d-~v~sSpl~Ra~qTA~~i~~~~ 98 (274)
T 4emb_A 62 AVEAGLLLKQE----G-------YSFD-IAFSSLLSRANDTLNIILREL 98 (274)
T ss_dssp HHHHHHHHHHT----T-------CCCS-EEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc----C-------CCCC-EEEECChHHHHHHHHHHHHhc
Confidence 88899988710 0 1112 499999999999999999886
No 110
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET: CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Probab=58.33 E-value=5.3 Score=40.22 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++- .| +.=| .||||+-.|++.||+++++++
T Consensus 38 A~~l~~~L~~----~~-------~~~d-~i~sSpl~Ra~qTA~~i~~~~ 74 (262)
T 1yfk_A 38 AKRGGQALRD----AG-------YEFD-ICFTSVQKRAIRTLWTVLDAI 74 (262)
T ss_dssp HHHHHHHHHH----HT-------CCCS-EEEECSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh----CC-------CCCC-EEEECCcHHHHHHHHHHHHhc
Confidence 8899998871 01 1112 599999999999999999876
No 111
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=57.83 E-value=4.9 Score=40.39 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++-. | ..=| .||||+=.|++.||+++++++
T Consensus 75 A~~l~~~L~~~----~-------~~~d-~i~sSpl~Ra~qTA~~i~~~~ 111 (273)
T 3d4i_A 75 ARLAGEALLDS----G-------VRVT-AVFASPALRCVQTAKHILEEL 111 (273)
T ss_dssp HHHHHHHHHHH----T-------CCEE-EEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----C-------CCCC-EEEECchHHHHHHHHHHHHHc
Confidence 88999988710 1 1111 499999999999999999875
No 112
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=53.57 E-value=8.9 Score=36.78 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKG 541 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg 541 (771)
|+.+|+.++-- | +.-| .||||+-.|++.||++++..
T Consensus 33 A~~~~~~L~~~----~-------~~~~-~i~sSp~~Ra~qTa~~l~~~ 68 (172)
T 3f2i_A 33 TEKVAYRLVKL----G-------RQFD-LIVTSPLIRARQTAEILLAS 68 (172)
T ss_dssp HHHHHHHHHHT----T-------CCCS-EEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc----C-------CCCC-EEEECChHHHHHHHHHHHhc
Confidence 89999998810 1 1112 59999999999999999987
No 113
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=52.23 E-value=9.4 Score=38.84 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.++-- | +.=| .||||+-.|++.||++++.++
T Consensus 39 A~~l~~~L~~~----~-------~~~d-~i~sSpl~Ra~qTA~~i~~~~ 75 (265)
T 1rii_A 39 AVRSGELIAEH----D-------LLPD-VLYTSLLRRAITTAHLALDSA 75 (265)
T ss_dssp HHHHHHHHHHT----T-------CCCS-EEEECSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc----C-------CCCC-EEEECCcHHHHHHHHHHHHHc
Confidence 88899988710 1 1112 499999999999999998875
No 114
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=50.26 E-value=7.9 Score=36.54 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.|+- . .+.-| .||||+-.|++.||++++..+
T Consensus 41 a~~l~~~l~~------~-----~~~~~-~i~sSpl~Ra~qTA~~i~~~~ 77 (173)
T 2rfl_A 41 AEIIADLAAD------R-----RYRPD-LILSSTAARCRQTTQAWQRAF 77 (173)
T ss_dssp HHHHHHHHHH------H-----TCCCS-EEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh------C-----CCCCC-EEEECCHHHHHHHHHHHHHhc
Confidence 8888888871 0 01112 599999999999999999875
No 115
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=41.47 E-value=12 Score=36.45 Aligned_cols=21 Identities=29% Similarity=0.140 Sum_probs=19.0
Q ss_pred eEeecCCchhHhhHHHHHhhh
Q 004147 522 KIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 522 KIysSdEgRVq~TAaaFakg~ 542 (771)
.||||+-.|++.||++++.++
T Consensus 51 ~i~sSpl~Ra~qTA~~i~~~~ 71 (213)
T 3hjg_A 51 GIISSPLSRCHDLAQILAEQQ 71 (213)
T ss_dssp CEEECSSHHHHHHHHHHHHHH
T ss_pred EEEECChHHHHHHHHHHHhcc
Confidence 399999999999999999764
No 116
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=41.41 E-value=12 Score=36.10 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++- .| ..=| .||||+-.|++.||+++++++
T Consensus 42 A~~l~~~L~~----~~-------~~~~-~i~sSpl~Ra~qTA~~i~~~~ 78 (211)
T 1fzt_A 42 AKLGGERLKS----RG-------YKFD-IAFTSALQRAQKTCQIILEEV 78 (211)
T ss_dssp HHHHHHHHHH----HT-------CCCS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----cC-------CCCC-EEEECCcHHHHHHHHHHHHhc
Confidence 8888888871 01 1112 599999999999999999876
No 117
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=41.29 E-value=18 Score=38.17 Aligned_cols=35 Identities=9% Similarity=-0.065 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.++ ++ .=| .||||+=.|++.||++++..+
T Consensus 216 a~~~~~~l~------~~-------~~d-~i~sSp~~Ra~~Ta~~~~~~~ 250 (364)
T 3fjy_A 216 AFALNRELA------CF-------NPT-RLATSPWLRCQETLQVLSWQT 250 (364)
T ss_dssp HHHHHHHHG------GG-------CEE-EEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc------cC-------CCC-EEEEcChHHHHHHHHHHHHhc
Confidence 889999988 11 112 499999999999999998874
No 118
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=40.65 E-value=17 Score=31.03 Aligned_cols=40 Identities=25% Similarity=0.480 Sum_probs=32.5
Q ss_pred ccccCC-CChHHHHHHHHhcCCcccCCchhhhHhhhHHHHHHHHHhCCCCC
Q 004147 62 AFYSSG-YPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPV 111 (771)
Q Consensus 62 sf~s~G-fpL~kai~y~~lr~p~~iNdl~~q~~l~DR~~~~qiL~~~gIP~ 111 (771)
..|.+| |.|...|.+++.|+.|+| |-..+...|+..|+.+
T Consensus 28 ~~ykkg~FsL~ELiKFAksrgtFvI----------d~~lA~EFL~~kG~~~ 68 (75)
T 2kxe_A 28 GHFNEGKFSLIELIKFAKSRETFII----------DDEIANEFLKSIGAEV 68 (75)
T ss_dssp HHHHTTSSCHHHHHHHHHHHTCSEE----------CHHHHHHHHHHHTCCC
T ss_pred HHhhcccccHHHHHHHHHhcCcEEe----------chHHHHHHHHhcCcee
Confidence 456774 999999999999999999 6667777888777543
No 119
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=36.06 E-value=22 Score=34.41 Aligned_cols=32 Identities=16% Similarity=0.092 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHH
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAA 537 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaa 537 (771)
|+.+|+.++- . .+.-| .||||+-.|++.||++
T Consensus 45 A~~l~~~l~~------~-----~~~~~-~i~sSpl~Ra~qTA~~ 76 (208)
T 2a6p_A 45 AELAGQLLGE------L-----ELDDP-IVICSPRRRTLDTAKL 76 (208)
T ss_dssp HHHHHHHHHT------T-----CCSSC-EEEECSSHHHHHHHHH
T ss_pred HHHHHHHHhc------C-----CCCCC-EEEECCcHHHHHHHHH
Confidence 8899998881 1 12223 5999999999999998
No 120
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=36.03 E-value=13 Score=36.68 Aligned_cols=35 Identities=20% Similarity=0.043 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.||+.++ ++ .=| .||||+-.|++.||+++++.+
T Consensus 53 A~~l~~~L~------~~-------~~d-~i~sSpl~Ra~qTA~~i~~~~ 87 (219)
T 2qni_A 53 AREASRLPW------AK-------ALR-RIVSSAETKAIETAHMLAETS 87 (219)
T ss_dssp HHHHHTSHH------HH-------TCC-EEEECSSHHHHHHHHHHTTTT
T ss_pred HHHHHHHHh------cC-------CCC-EEEECCcHHHHHHHHHHHHhc
Confidence 778887776 11 112 599999999999999998754
No 121
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.40A {Thermus thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A 2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A 2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A 2enw_A ...
Probab=33.19 E-value=18 Score=34.20 Aligned_cols=15 Identities=33% Similarity=0.302 Sum_probs=14.8
Q ss_pred EeecCCchhHhhHHH
Q 004147 523 IYSSDEGRVQMSAAA 537 (771)
Q Consensus 523 IysSdEgRVq~TAaa 537 (771)
||||+-.|++.||++
T Consensus 47 i~sSpl~Ra~qTA~~ 61 (177)
T 1v37_A 47 AFSSDLLRARRTAEL 61 (177)
T ss_dssp EEECSSHHHHHHHHH
T ss_pred EEECCcHHHHHHHHH
Confidence 999999999999998
No 122
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote structure initiative; 1.75A {Saccharomyces cerevisiae} PDB: 3lg2_A 3oi7_A* 3ll4_A*
Probab=26.06 E-value=23 Score=35.44 Aligned_cols=42 Identities=14% Similarity=0.011 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHHhhh
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFakg~ 542 (771)
|+.+|+.++-.+ .++ .-.+--+||||.-.|++.||++++.++
T Consensus 40 A~~l~~~L~~~~---~~~----~~~~~~~i~sSpl~Ra~qTA~~i~~~~ 81 (265)
T 3f3k_A 40 MLRTGESVFRNN---QFL----NPDNITYIFTSPRLRARQTVDLVLKPL 81 (265)
T ss_dssp HHHHHHHHHTC----CCS----CGGGEEEEEECSSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhcc---ccc----CCCCCCEEEECCHHHHHHHHHHHHHhc
Confidence 889999887211 010 001112599999999999999998765
No 123
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=23.05 E-value=29 Score=33.66 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCCCchhhhhhcccccceEeecCCchhHhhHHHHH
Q 004147 494 VNEIAYWWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFA 539 (771)
Q Consensus 494 Ae~LG~~fRyp~~~~gLlrLhst~rhDlKIysSdEgRVq~TAaaFa 539 (771)
|+.+|+.++- . .+.-| .||||.=.|++.||++++
T Consensus 49 a~~~~~~l~~------~-----~~~~d-~i~~Spa~Ra~qTa~~~~ 82 (186)
T 4hbz_A 49 ATAAGQWLRG------H-----LPAVD-VVVCSTAARTRQTLAATG 82 (186)
T ss_dssp HHHHHHHHHH------H-----SCCCC-EEEEESSHHHHHHHHHHT
T ss_pred HHHhhhHhhh------c-----ccCCC-ccccCcchhHHHHHHhhc
Confidence 8899998881 0 12223 499999999999999764
Done!