RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 004147
(771 letters)
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET:
ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A*
3t9d_A* 3t9e_A* 3t9f_A* 3t54_A* 3t99_A*
Length = 330
Score = 517 bits (1334), Expect = e-180
Identities = 185/328 (56%), Positives = 243/328 (74%), Gaps = 3/328 (0%)
Query: 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCLIAFY 64
++I +G+C M KK S PM +IL+R+ F V+ F ++VIL +P+E WP+CDCLI+F+
Sbjct: 6 RQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFH 65
Query: 65 SSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQ 124
S G+PL+KA +YA LR PF++N+L Q+L+ DRR+VY L+ GI +PRYA++NR+
Sbjct: 66 SKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGILLPRYAILNRDPNNP 125
Query: 125 ELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSE 184
+ IE ED VEV+G F KPFVEKPV +DH++ IYYP+SAGGG + LFRK+G+RSS
Sbjct: 126 KECNLIEGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSV 185
Query: 185 FHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244
+ P+ VR+ GSYIYEEFMPT GTDVKVYTVGP+YAHAEARKSP +DG V R+ +GKEV
Sbjct: 186 YSPES-NVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEV 244
Query: 245 RYPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSYKYYDDAAC 304
RYPV+L EK +A +VC+AF+Q VCGFDLLR G+SYVCDVNG+SFVKNS KYYDD A
Sbjct: 245 RYPVILNAREKLIAWKVCLAFKQTVCGFDLLRANGQSYVCDVNGFSFVKNSMKYYDDCAK 304
Query: 305 VLRKMFLEAKAPHLSSAIPPILPWKVNE 332
+L + + AP IP +P + +
Sbjct: 305 ILGNIVMRELAPQFH--IPWSIPLEAED 330
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 120 bits (301), Expect = 5e-30
Identities = 47/354 (13%), Positives = 94/354 (26%), Gaps = 86/354 (24%)
Query: 1 MEVHKKITIGVCVMEKKVFSAPMGQILDRLQAFGEFEVIHFGDKVILEDPIEKWPICDCL 60
M + +++ + + E K + + V L + +
Sbjct: 6 MTTKQTVSLFIWLPESKQKTLFISTKNHTQFELNNIIF-----DVTLSTELPDKEPNAII 60
Query: 61 IAF-YSSGYPLEKAESYATLRKPFLVNE-LEPQHLLHDRRKVYEQLEKYGIPVPRYALVN 118
+ G ++ Y L E ++ R ++ L K IP+P V
Sbjct: 61 TKRTHPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIKNNIPIPNSFSVK 120
Query: 119 REVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGD----DHSIMIYYPSSAGGGMKEL 174
+ E ++ PF+ KP + H + I G+ ++
Sbjct: 121 SKE---------EVIQLLQSKQLIL--PFIVKPENAQGTFNAHQMKIVLEQE---GIDDI 166
Query: 175 FRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGV 234
+ + ++ VKV+ +G P V
Sbjct: 167 --------------------HFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRC 206
Query: 235 VMRNPD-----------------------------------GKEVRYPVLLTPNEKQMAR 259
+++ D + + + +A
Sbjct: 207 GIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAY 266
Query: 260 EVCIAFRQAVCGFDLLRCE--GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFL 311
+V A +CG D ++ G V DVN + SY D + K+ L
Sbjct: 267 KVRCALGVQLCGIDFIKENEQGNPLVVDVNVFP----SYGGKVDFDWFVEKVAL 316
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 102 bits (256), Expect = 7e-24
Identities = 48/344 (13%), Positives = 99/344 (28%), Gaps = 67/344 (19%)
Query: 5 KKITIGVCVMEKKVFSAPMGQILDRLQAFG-EFEVIHFGD--------KVILEDPIEKWP 55
K +G + EKK+ + + G E ++ VI+ +
Sbjct: 17 KGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVIL 76
Query: 56 ICDCLIAFYSSGYPLEKAESYATLRKPFLV-NELEPQHLLHDRRKVYEQLEKYGIPVPRY 114
D S + + + Y +V + L L DR K YE + K +
Sbjct: 77 EAD--QNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDD 134
Query: 115 ALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDD---HSIMIYYPSSAGGGM 171
+ + P+ EL ++ + N PF+ K H + I + G+
Sbjct: 135 RICSP--PFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQE---GL 189
Query: 172 KELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVV 231
+ + + + F+ KV+ VG Y +
Sbjct: 190 NAI--------------------QPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNF 229
Query: 232 DGVVMRN-------------------PDGKEVRYPVLLTPNE--KQMAREVCIAFRQAVC 270
+ ++ +E ++++R + A ++
Sbjct: 230 SAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLF 289
Query: 271 GFDLLRCE--GRSYVCDVNGWSFVKNSYKYYDDAACVLRKMFLE 312
G D++ G+ V D+N + Y+ + L
Sbjct: 290 GIDIIINNQTGQHAVIDINAFP----GYEGVSEFFTDLLNHIAT 329
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 68.2 bits (167), Expect = 1e-12
Identities = 49/270 (18%), Positives = 86/270 (31%), Gaps = 38/270 (14%)
Query: 25 QILDRLQAFG-EFEVIHFGD-KVILEDPIEKWPICDCLI----AFYSSGYPLEKAESYAT 78
+ +R +A G ++ ++ ++L + ++ + + +
Sbjct: 15 MLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTALGI 74
Query: 79 LRKPFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEV 138
+VN E D+ L K G+P P+ AL E +E
Sbjct: 75 ----PVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDRE---------EALRLMEA 121
Query: 139 HGNRFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSY 198
G P V KPV G S G + +V + +
Sbjct: 122 FG----YPVVLKPVIG-----------SWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLF 166
Query: 199 IYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMA 258
+E++ G D++V+ VG A R+S R G+ P LT +++
Sbjct: 167 YIQEYVEKPGRDIRVFVVGERAIAAIYRRSAHWITNTARG--GQAENCP--LTEEVARLS 222
Query: 259 REVCIAFRQAVCGFDLLRCEGRSYVCDVNG 288
+ A V DL E V +VN
Sbjct: 223 VKAAEAVGGGVVAVDLFESERGLLVNEVNH 252
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 3e-09
Identities = 92/520 (17%), Positives = 172/520 (33%), Gaps = 165/520 (31%)
Query: 302 AACVLRKMFLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTRQGSGLGTFGQSEELRCVIA 361
A L++ F P P +EP P E + + F L V +
Sbjct: 29 IASQLQEQFN-KILPE-----PTEGFAADDEPTTPAELVGK-------F-----LGYVSS 70
Query: 362 VMRHGDRTPKQKVKLKVT----EEKLLN------LMLKYNGGRPRAETKLKSAVQLQDLL 411
++ +V L + E L L K K K +++ +
Sbjct: 71 LVEPSKVGQFDQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL--IKNYI 127
Query: 412 DATRILVPRSRPGRESDSEAEDFEHSKK---RIICVAILHLGGQ--FEKFFN-------- 458
A RI+ R ++S+S F + +++ AI GGQ + +F
Sbjct: 128 TA-RIMAKRPFD-KKSNSAL--FRAVGEGNAQLV--AIF--GGQGNTDDYFEELRDLYQT 179
Query: 459 ----VQDVLLSIQCHLLLANLVSGQFIDFLIEQFYQDNGVNEIAYWWGSHSEGT------ 508
V D++ L + L+ +D E+ + G+N + W + T
Sbjct: 180 YHVLVGDLIKFSAETL--SELIRTT-LDA--EKVFTQ-GLNILE--WLENPSNTPDKDYL 231
Query: 509 ----------GLLRLHSTYRHDLKI--YSSDEGRVQMSAA-AFAKGLLDLEGQLTPILVS 555
G+++L + Y K+ ++ E R + A ++GL+ T + ++
Sbjct: 232 LSIPISCPLIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGLV------TAVAIA 284
Query: 556 LVSKDSSMLDGLDNASIEM--------EEAKARLNEIIKSGSKMIHSNGSSDCPWMADGV 607
S + A I + EA + + + D + +
Sbjct: 285 ETDSWESFFVSVRKA-ITVLFFIGVRCYEAYPNTS---------LPPSILEDS--LENNE 332
Query: 608 GLPPNASELLPKLVKLTKKVTEQVRQLAKDE-DEDLAETNPYDVIPPYDQAK-AL--GKT 663
G+P S P L + L +++ + + +TN + +P Q + +L G
Sbjct: 333 GVP---S---PMLS---------ISNLTQEQVQDYVNKTNSH--LPAGKQVEISLVNGAK 375
Query: 664 NIDVDRIAAGLPCGSEGFLLMYARWRKLE--------RDLYNERKERFD-----ITQIPD 710
N+ + +G P G L RK + R ++ERK +F + P
Sbjct: 376 NL----VVSGPPQSLYGLNLTL---RKAKAPSGLDQSRIPFSERKLKFSNRFLPVA-SP- 426
Query: 711 VYDSCKYDLLHNA----HLNLEGLDELFKVAQLLADGVIP 746
+ S LL A + +L + F + IP
Sbjct: 427 -FHS---HLLVPASDLINKDLVKNNVSFNAKDI----QIP 458
Score = 41.6 bits (97), Expect = 0.001
Identities = 62/429 (14%), Positives = 116/429 (27%), Gaps = 157/429 (36%)
Query: 75 SYATLRKPFLVNELEPQHLLHDRRKVYEQL-EKYG--IPVPRYALVNREVPYQELDY--- 128
S+ +L LV P + QL E++ +P P + P +
Sbjct: 12 SHGSLEHVLLV----PTASFF----IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 129 ---FIEEE-------DFVEVHGNRFWKPFVEKPVHGDD-HSIMIYYPSSAGGGM---KEL 174
++ F +V + F + G+D H++ + KEL
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTE-FENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 175 FR------KVGNRSSEFHPD---VRRVRREGSYIYEEFMPTGG---TDV------KVYTV 216
+ + R + + R V + + F GG TD +Y
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF---GGQGNTDDYFEELRDLYQT 179
Query: 217 GPEYAHAEARKSPVVDGVVMRNPDGKEVRYPVLL-----------TPNEKQMAR-EV-C- 262
+ S ++R E + L TP++ + + C
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 263 -IAFRQAVCGFDLLRCEG------RSYVCDVNG----------------W-SFVKNSYKY 298
I Q + G RSY+ G W SF + K
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 299 YDDAACVLRKMF---LEAK--APHLSSAIPPILPWKVNEPVQPTEGLTRQGSGLGTFGQS 353
+ +F + P+ S +PP + + + ++ EG+
Sbjct: 300 -------ITVLFFIGVRCYEAYPNTS--LPPSI---LEDSLENNEGVP------------ 335
Query: 354 EELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKLKSAVQLQDLLDA 413
+P ML + + Q+QD ++
Sbjct: 336 ---------------SP----------------MLSISN---------LTQEQVQDYVNK 355
Query: 414 TRILVPRSR 422
T +P +
Sbjct: 356 TNSHLPAGK 364
Score = 30.8 bits (69), Expect = 2.1
Identities = 46/301 (15%), Positives = 76/301 (25%), Gaps = 137/301 (45%)
Query: 236 MRNPDGKEVR--YPVLLTPNEKQMAREVCIAFRQAVCGFDLLRCEGRSYVCDVNGWS--- 290
M G ++ A++V + +A D ++ D G+S
Sbjct: 1631 M----GMDLYKTSKA---------AQDV---WNRA----D-------NHFKDTYGFSILD 1663
Query: 291 FVKN------------------------SYKYYDDAACVLRKMFLEAKAPHLSSAIPPIL 326
V N ++ D K+F E H +S
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN-EHSTSYT---- 1718
Query: 327 PWKVNEPVQPTEGLTRQGSGLGT-FGQSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLN 385
++ L+ T F Q A+ EK
Sbjct: 1719 -FR-----SEKGLLSA------TQFTQ-------PALT---------------LMEKAAF 1744
Query: 386 LMLKYNGGRPR----A-----E-TKLKS---AVQLQDLLDATRILVPRSRPGRESDSEAE 432
LK G P A E L S + ++ L++ +V R G
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE----VV-FYR-GMTMQVAVP 1798
Query: 433 DFEHSKKRIICVAILHLGGQFEKFFNVQDV-------------LLSIQCHLLLANL-VSG 478
E + +AI G+ F+ + + L+ I N V
Sbjct: 1799 RDELGRSNYGMIAI--NPGRVAASFSQEALQYVVERVGKRTGWLVEI------VNYNVEN 1850
Query: 479 Q 479
Q
Sbjct: 1851 Q 1851
Score = 30.0 bits (67), Expect = 4.2
Identities = 46/283 (16%), Positives = 80/283 (28%), Gaps = 120/283 (42%)
Query: 502 GSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDS 561
GS +G G+ DL Y + S A A+ + + D+
Sbjct: 1625 GSQEQGMGM---------DL--YKT-------SKA--AQDVWN-RA------------DN 1651
Query: 562 SMLDGLDNASIEMEEAKARLNEIIKSG--SKMIHSNGSSDCPWMADGVGLPPNASELL-- 617
D SI +I+ + + IH G G + N S ++
Sbjct: 1652 HFKDTY-GFSIL---------DIVINNPVNLTIHFGG-------EKGKRIRENYSAMIFE 1694
Query: 618 ------PKLVKLTKKVTEQVRQLA-KDEDEDLAETNPYDVIPPYDQAKALGKTNIDVDRI 670
K K+ K++ E + E L+ T + Q AL
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-------FTQP-AL---------- 1736
Query: 671 AAGLPCGSEGFLLMYARWRKLERDLYNERKERFDITQIPDV--------YDSCKYDLLHN 722
L+ A + L K + + Y + L
Sbjct: 1737 ----------TLMEKAAFEDL--------KSKG-LIPADATFAGHSLGEYAA----LASL 1773
Query: 723 AH-LNLE-GLDELFKVAQLLADGVIPNEYG--------INPKQ 755
A +++E ++ +F + V +E G INP +
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR 1816
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 1e-08
Identities = 98/583 (16%), Positives = 178/583 (30%), Gaps = 174/583 (29%)
Query: 291 FVKNSYKY-YDDAACVLRKMF---LEAKAPHLSSAIPPILPWK-----VNEPVQPTEG-- 339
F ++Y Y D V F + K + IL + + G
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSK-DAVSGTL 65
Query: 340 ------LTRQGSGLGTFGQSEELRC----VIAVMRHGDRTPKQKVKLKVTE-EKLLN--- 385
L++Q + F E LR +++ ++ R P ++ + + ++L N
Sbjct: 66 RLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 386 LMLKYNGGRPRAETKLKSAVQLQDLLDATRILVPRSRPGRESDSEAEDFEH----SKKRI 441
+ KYN R + KL+ A L +L A +L+ S K
Sbjct: 125 VFAKYNVSRLQPYLKLRQA--LLELRPAKNVLI-----------------DGVLGSGKTW 165
Query: 442 ICVAILHLGGQFEKFFNVQDVLLSI-QCH---LLLANLVSGQFIDFLIEQFYQDNGVNEI 497
+ + + L + + + + L++ C+ +L L Q + + I+ + +
Sbjct: 166 VALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDHSS 221
Query: 498 AYWWGSHSEGTGLLRL--HSTYRHDLKIYSSDEGRVQMS--AAAFAKGLLDLEGQLTPIL 553
HS L RL Y + L + VQ + AF +L + IL
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVL--LN--VQNAKAWNAF-----NLSCK---IL 269
Query: 554 VSLVSKDSSMLDGLDNAS---IEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVG-L 609
+ ++ + D L A+ I ++ L K + ++ L
Sbjct: 270 L--TTRFKQVTDFLSAATTTHISLDHHSMTLTP---DEVKSLLLK------YLDCRPQDL 318
Query: 610 PPNASELLPKLV-----------------------KLTKKVTEQVRQLAKDED----EDL 642
P P+ + KLT + + L E + L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 643 AETNPYDV-IPPYDQAKALG-----KTNIDVDRIAAGLPCGSEGFLLMYARWRKLER--- 693
+ P IP L DV + L S L+ + K
Sbjct: 379 S-VFPPSAHIPT----ILLSLIWFDVIKSDVMVVVNKLHKYS---LV--EKQPKESTISI 428
Query: 694 -DLYNERKERFD---------ITQ--IPDVYDSCK--------YDLLHNA-HL---NLEG 729
+Y E K + + + IP +DS Y H HL
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 730 LDELFKVAQLLAD-GVIPNEYGINPKQKLKIGSKNSSLNGKGS 771
LF+ + D + +QK++ +++ N GS
Sbjct: 489 RMTLFR--MVFLDFRFL--------EQKIR--HDSTAWNASGS 519
Score = 33.3 bits (75), Expect = 0.39
Identities = 32/164 (19%), Positives = 59/164 (35%), Gaps = 42/164 (25%)
Query: 2 EVHKKITIGVCVMEKK----VFSAPMGQILDRLQAFGEFEVIHFGDKVILE--DPIEKWP 55
++HK ++EK+ S P + +++ E+ +H + I++ + + +
Sbjct: 410 KLHKY-----SLVEKQPKESTISIPSIYLELKVKLENEYA-LH---RSIVDHYNIPKTFD 460
Query: 56 ICDCLIA-----FYSS-GYPL---EKAESYATLRKPFL-VNELEPQHLLHDRRK------ 99
D + FYS G+ L E E R FL LE Q + HD
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKIRHDSTAWNASGS 519
Query: 100 ---VYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHG 140
+QL+ Y Y N + ++ + DF+
Sbjct: 520 ILNTLQQLKFYK----PYICDNDPKYERLVNAIL---DFLPKIE 556
Score = 30.6 bits (68), Expect = 2.3
Identities = 64/507 (12%), Positives = 129/507 (25%), Gaps = 156/507 (30%)
Query: 1 MEVHKKITI-GVCVME---KKVFSAPMGQILDRLQAFGEFEV--IHFGDKVILEDPIEK- 53
+ K + I G + K + + +F++ ++ + E +E
Sbjct: 147 LRPAKNVLIDG---VLGSGKTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEML 202
Query: 54 WPIC------DCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVY--EQLE 105
+ + +SS L A LR+ L ++ LL V +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKPYENCLL-VLLNVQNAKAWN 260
Query: 106 KYGIPVP-----RYALV-NREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSI 159
+ + R+ V + ++ K + K + +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSLLLKYLDCRPQDL 318
Query: 160 MIYYPSSAGGGM-------KELFRKVGNRSSEF-HPDVRRVRR--EGSY----------I 199
P E R + H + ++ E S +
Sbjct: 319 ----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 200 YEEF--MPTGGTDVKV-------------YTVGPEYAHAEARKSPVVDGVVMRNPDGKEV 244
++ P + + + + S +V + P +
Sbjct: 375 FDRLSVFPP---SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-----LVEKQPKESTI 426
Query: 245 RYPVLL------TPNEKQMAREV--CIAFRQAVCGFDLLRCEGRSYVCDVNGWSFVKNSY 296
P + NE + R + + DL+ Y Y
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF------------Y 474
Query: 297 KY--Y-------DDAACVLRKM-----FLEAKAPHLSSAIPPILPWKVNEPVQPTEGLTR 342
+ + + + R + FLE K H S+A
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA------------------WNA 516
Query: 343 QGSGLGTFGQSEELRCVIAVMRHGDRTPKQKVKLKVTEEKLLNLMLKYNGGRPRAETKL- 401
GS L T Q + + I D P E+L+N +L + P+ E L
Sbjct: 517 SGSILNTLQQLKFYKPYIC-----DNDP--------KYERLVNAILDF---LPKIEENLI 560
Query: 402 ----KSAVQ--LQD-----LLDATRIL 417
++ L +A + +
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQV 587
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Length = 458
Score = 38.7 bits (89), Expect = 0.007
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 512 RLHSTYRH------DLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLD 565
+ Y L +++S+ GRV ++ FA+G + + + +++S+D+ M
Sbjct: 143 AFRTKYGELFDTNDTLPVFTSNSGRVYQTSQYFARGFMGDDFSNDTVKTNIISEDADMGA 202
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 37.2 bits (86), Expect = 0.018
Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 44/153 (28%)
Query: 93 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPV 152
D+ K+ + K G+ + V ++ +EE P + KP
Sbjct: 136 NARDKNKMRDAFNKAGVKSIKNKRVTTL---EDFRAALEEIGT----------PLILKPT 182
Query: 153 HGDDHSIMIYYPSSAGGGM---------KELFRKVGNRSSEFHPDVRRVRREGSYIYEEF 203
+ ++ G+ ++ F +V + + + V E +I EEF
Sbjct: 183 YL-----------ASSIGVTLITDTETAEDEFNRVNDYLKSINVP-KAVTFEAPFIAEEF 230
Query: 204 MP-TGGTDVKVYTVGPEYAHAEARKSPVVDGVV 235
+ G + + ++G++
Sbjct: 231 LQGEYGDWYQTEGYSDYIS---------IEGIM 254
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.019
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 38/68 (55%)
Query: 506 EGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLD 565
E L +L ++ LK+Y+ D SA A A I
Sbjct: 18 EKQALKKLQAS----LKLYADD------SAPALA------------I------------- 42
Query: 566 GLDNASIE 573
A++E
Sbjct: 43 ---KATME 47
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 36.0 bits (83), Expect = 0.034
Identities = 31/210 (14%), Positives = 53/210 (25%), Gaps = 44/210 (20%)
Query: 82 PFLVNELEPQHLLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGN 141
+V+ L D+ +YE + GI R E E
Sbjct: 100 TVIVSPYAACELCFDKYTMYEYCLRQGIAHARTYATMASF---EEALAAGEVQL------ 150
Query: 142 RFWKPFVEKPVHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSYIYE 201
P KP +G SA + + E + + I +
Sbjct: 151 ----PVFVKPRNG-----------SASIEV-----RRVETVEEVE---QLFSKNTDLIVQ 187
Query: 202 EFMPTGGTDVKVYTVGPE---YAHAEARKSPVVDGVVMRNPDGKEVRYPVLLTPNEKQMA 258
E + V Y + K + G + + V + ++
Sbjct: 188 ELLVGQELGVDAYVDLISGKVTSIFIKEKLTMRAGETDK---SRSVLRDDVF-----ELV 239
Query: 259 REVCIAFR-QAVCGFDLLRCEGRSYVCDVN 287
V FDL G Y+ ++N
Sbjct: 240 EHVLDGSGLVGPLDFDLFDVAGTLYLSEIN 269
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella
tularensis subsp} PDB: 2glc_A 2glb_A 2gla_A 3it0_A*
3it1_A* 3it2_A 2p36_A*
Length = 342
Score = 35.4 bits (81), Expect = 0.064
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 351 GQSEELRCVIAVMRHGDRTP 370
G S +L V + RHGDR P
Sbjct: 3 GYSSKLIFVSMITRHGDRAP 22
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi
hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP:
c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A*
2l3h_A 2l77_A 2l79_A
Length = 354
Score = 35.1 bits (80), Expect = 0.071
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 354 EELRCVIAVMRHGDRTP 370
+EL+ V V RHGDR+P
Sbjct: 1 KELKFVTLVFRHGDRSP 17
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase,
phytate binding site, hydrolase; HET: IHP; 1.88A
{Enterobacter cloacae} PDB: 1nt4_A*
Length = 398
Score = 34.9 bits (79), Expect = 0.11
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 508 TGLLRLHSTYRHD-LKIYSSDEGRVQMSAAAFAKGL----------LDLEGQLTPILVSL 556
G+++ D + Y++ R +A F G + G + P +
Sbjct: 69 QGMVKTGECPAADSVYAYANSLQRTVATAQFFITGAFPGCDVPVHHQEKMGTMDPTFNPV 128
Query: 557 VSKDSSMLDGLDNASIEMEEAKARLNEIIKSGSKMIHSNGSSDC 600
++ +S ++E E K +L E K +M + S C
Sbjct: 129 ITDNSPEFREKALKAMETERQKMQLTESYKLLEQMTNYADSPSC 172
Score = 33.7 bits (76), Expect = 0.24
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 355 ELRCVIAVMRHGDRTP 370
+L V+ + R R P
Sbjct: 6 QLEQVLIMSRANLRAP 21
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella
pneumoniae} PDB: 2wni_A 2wu0_A
Length = 418
Score = 34.1 bits (77), Expect = 0.15
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 349 TFGQSEELRCVIAVMRHGDRTP 370
+ +L V+ + RHG R P
Sbjct: 9 PPPRDWQLEKVVELSRHGIRPP 30
Score = 33.3 bits (75), Expect = 0.27
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 500 WWGSHSEGTGLLRLHSTYRHDLKIYSSDEGRVQMSAAAFAKGL 542
G H GLL+ + + +S R + +A A G
Sbjct: 70 EEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGA 112
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 34.2 bits (79), Expect = 0.17
Identities = 21/157 (13%), Positives = 39/157 (24%), Gaps = 54/157 (34%)
Query: 93 LLHDRRKVYEQLEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPV 152
+ D+ K+ E +KY + R+ +V EL +E P + K
Sbjct: 106 MCGDKYKMKEAFKKYNVNTARHFVVRN---ENELKNALENLKL----------PVIVKAT 152
Query: 153 HGDDHSIMIYYPSSAGGGMKELFRKVGNRS--SEFHPDVRRVRREGSYIYEEFMPTGGTD 210
G+ + + + + I EEF+
Sbjct: 153 D-----------LQGSKGI----YIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE----- 192
Query: 211 VKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYP 247
G E+ V +V +
Sbjct: 193 ------GYEFG---------AQAFV----YKNDVLFV 210
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP;
2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A*
1dkm_A 1dkn_A 1dko_A 1dkl_A
Length = 410
Score = 33.4 bits (75), Expect = 0.27
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 355 ELRCVIAVMRHGDRTP 370
+L V+ V R G R P
Sbjct: 7 KLESVVIVSRAGVRAP 22
Score = 31.5 bits (70), Expect = 1.1
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 500 WWGSHSEGTGLLRLHSTYRHD-LKIYSSDEGRVQMSAAAFAKGL 542
+ GLL + + I + + R + + AFA GL
Sbjct: 61 YQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGL 104
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.4 bits (73), Expect = 0.41
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 16/88 (18%)
Query: 68 YPLEKAESYATLR-----KPF--LVNELEPQHLLHDRRKV----YEQLEKYGIPVPRYAL 116
Y E E+ P +V+ LE +K YE E I +P
Sbjct: 124 YSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELP---- 179
Query: 117 VNREVPYQELDYFIEEEDFVEVHGNRFW 144
E+ + E + D V+ +
Sbjct: 180 -PNEILFSENNDMDNNNDGVDELNKKCT 206
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 33.0 bits (75), Expect = 0.45
Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 29/134 (21%)
Query: 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163
L+K G VP+ + + + E+ V KP
Sbjct: 497 LQKAGFNVPQSVEFTSLE--KAVASYALFENR----------AVVIKPKST--------- 535
Query: 164 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSY-IYEEFMPTGGTDVKVYTVGPEYAH 222
+ G G+ + V NR +F + RE + E+++ GT+ + + +G E
Sbjct: 536 --NYGLGITIFQQGVQNR-EDFAKALEIAFREDKEVMVEDYLV--GTEYRFFVLGDETLA 590
Query: 223 AEARKSPVV--DGV 234
R V D V
Sbjct: 591 VLLRVPANVVGDSV 604
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase;
HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP:
c.60.1.2
Length = 460
Score = 32.5 bits (73), Expect = 0.55
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 512 RLHSTYRH------DLKIYSSDEGRVQMSAAAFAKGLLDLEGQLTPILVSLVSKDSSMLD 565
+ Y H + +SS GRV +A F +G L + + D
Sbjct: 132 DYKARYGHLWNGETVVPFFSSGYGRVIETARKFGEGFFGYNYSTNAALNIISESEVMGAD 191
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 31.7 bits (72), Expect = 1.00
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 182 SSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDG 241
+ + +RR R + +G V+ Y + + A +++ N D
Sbjct: 2 AKNHYDILRRHIRSEDLLETPEFGSGSRIVEEYWIQEPFTKA----------IIVENEDE 51
Query: 242 KEVRYPVL---LTPNEKQMAREV 261
Y L ++ E ++ +
Sbjct: 52 FRNVYYALEPTVSSEEAEVISAL 74
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 31.0 bits (70), Expect = 1.7
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 34/140 (24%)
Query: 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYY 163
L++ P P +E F ++ KP V KP + + I
Sbjct: 492 LDEKHFPTPFGDEFTDR---KEA-----LNYFSQIQD----KPIVVKPKST-NFGLGI-- 536
Query: 164 PSSAGGGMKELFRKVGNRSSEFHPDVRRVRREGSY-IYEEFMPTGGTDVKVYTVGPEYAH 222
+F+ N + + + E S + EE++ GT+ + + + +
Sbjct: 537 ---------SIFKTSANL-ASYEKAIDIAFTEDSAILVEEYIE--GTEYRFFVLEGDCIA 584
Query: 223 AEARKSPVVDGVVMRNPDGK 242
R + V G DG
Sbjct: 585 VLLRVAANVVG------DGI 598
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate
phosphohydrolase, 37288-11-2, MYO-inositol hexakis
sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger}
PDB: 3k4p_A* 1ihp_A
Length = 444
Score = 30.7 bits (68), Expect = 1.9
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 518 RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQ 548
I SS RV S F +G + +
Sbjct: 130 NIVPFIRSSGSSRVIASGKKFIEGFQSTKLK 160
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 30.4 bits (68), Expect = 2.9
Identities = 16/84 (19%), Positives = 31/84 (36%)
Query: 571 SIEMEEAKARLNEIIKSGSKMIHSNGSSDCPWMADGVGLPPNASELLPKLVKLTKKVTEQ 630
S E + + + M+ +S A + L SE++P L +
Sbjct: 159 SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDS 218
Query: 631 VRQLAKDEDEDLAETNPYDVIPPY 654
VR LA + ++A+ P + +
Sbjct: 219 VRLLAVEACVNIAQLLPQEDLEAL 242
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 29.8 bits (68), Expect = 3.4
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 154
+ G+PV + + R ++ D + P + KP
Sbjct: 104 WQGAGLPVAPWVALTRA------EFEKGLSDKQLAEISALGLPVIVKPSRE 148
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 29.5 bits (67), Expect = 4.3
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 694 DLYNERKERFDITQIPDVYDSCKYDLLHNAHLNLEGLDELFKVAQLLADGV 744
DL ++ I + Y + YD+ + + + L ++ D
Sbjct: 128 DLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADI---IPHFQDKT 175
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 29.4 bits (65), Expect = 4.7
Identities = 25/212 (11%), Positives = 57/212 (26%), Gaps = 9/212 (4%)
Query: 49 DPIEKWPICDCLIAFYSSGYPLEKAESYATLRKPFLVNELEPQHLLHDRRKVYEQLEKYG 108
D ++ + +I + G EK R + +L + + L+K
Sbjct: 106 DFLDALIVSMDVIQHETIGKKFEK-------RHIEIFTDLSSRFSKSQLDIIIHSLKKCD 158
Query: 109 IPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHGDDHSIMIYYPSSAG 168
I + + + D + K E+ G + M+
Sbjct: 159 ISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGE 218
Query: 169 GGMKELFRKVGNRSSEFHPDVRRVRREGSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKS 228
G+ E++ + + Y + +
Sbjct: 219 DGLDEIYSFSESLRKLCVFKKIERHSIHWPCRLTIGSNLSIRIAAYKSILQERVKKTWT- 277
Query: 229 PVVDGVVMRNPDGKEVRYPVLLTPNEKQMARE 260
VVD ++ D ++ L +E ++ +E
Sbjct: 278 -VVDAKTLKKEDIQKETVYCLNDDDETEVLKE 308
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger,
toprim, walker B ATP binding motif; 2.50A {Deinococcus
radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Length = 228
Score = 28.7 bits (65), Expect = 5.5
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 657 AKALGKTNIDVDRIAAGLPCGSEGFLLMYA 686
+ L + RIA G+P G L Y
Sbjct: 155 QRLLEPLGAAISRIAYGVPVGGS---LEYT 181
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle,
glycoprotein phosphohistidine, hydrolase; HET: NEP NAG;
1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB:
1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Length = 442
Score = 29.1 bits (64), Expect = 6.1
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 518 RHDLKIYSSDEGRVQMSAAAFAKGLLDLEGQL 549
I +S RV S F +G +
Sbjct: 129 SVVPFIRASGSDRVIASGEKFIEGFQQAKLAD 160
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 28.6 bits (65), Expect = 6.7
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 12/51 (23%)
Query: 104 LEKYGIPVPRYALVNREVPYQELDYFIEEEDFVEVHGNRFWKPFVEKPVHG 154
L GI P + + + ED ++ P V KP G
Sbjct: 105 LRYEGIETPDWIELTK------------MEDLNFDELDKLGFPLVVKPNSG 143
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 28.1 bits (63), Expect = 7.5
Identities = 5/30 (16%), Positives = 17/30 (56%)
Query: 442 ICVAILHLGGQFEKFFNVQDVLLSIQCHLL 471
+ LH+ + + + ++ +L+S++ +L
Sbjct: 108 VIKNNLHILKNWNRNYTIETILISLRQEML 137
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 28.0 bits (63), Expect = 7.7
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 442 ICVAILHLGGQFEKFFNVQDVLLSIQCHLLLAN 474
+C++IL + ++ +LL IQ LL
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQ--ELLNE 125
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 27.6 bits (62), Expect = 8.7
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 442 ICVAILHLGGQFEKFFNVQDVLLSIQCHLLLAN 474
IC++IL+ + ++ ++L +Q LL +
Sbjct: 92 ICLSILNEDQDWRPAITLKQIVLGVQ--DLLDS 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.411
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,264,911
Number of extensions: 786276
Number of successful extensions: 1973
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1956
Number of HSP's successfully gapped: 55
Length of query: 771
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 670
Effective length of database: 3,881,772
Effective search space: 2600787240
Effective search space used: 2600787240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)